Citrus Sinensis ID: 043293

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MEKVASTVHVNTKVLFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDAQVVEQLAANSGGNNSTAVT
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccEEEcccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHHHcccccHccccccccccHHHHHHHHHHccccHHHEEEEccccccccccEEcHHHHHcccHHccccccccHcHHHcccccccccHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MEKVASTVHVNTKVLFTVFIVTSagfvrsdfnkgrkgcgdqladfsaclpfvggkakspsptccssitkegsktrKCLCLLVkdrneprhgfkmNATLALslpsvrhapatvsdcpallnlppnstdAQVVEQLAAnsggnnstavt
Flexible Loop (DISEMBL)
mekvastvhvntkvlFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVggkakspsptccssitkegsktrkCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDAQVVEQLaansggnnstavt
Low Complexity Region (SEG)
MEKVASTVHVNTKVLFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDAQVVEQLAANSGGNNSTAVT
Disordered region (IsUnstruct)
******TVHVNTKVLFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGK*******CCSSI*****KTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHA*ATVSDCPAL*****************************
Disordered Region (DISOPRED)
************KVLFTVFIVTSAGF***************LADFSACLPFVG*****P***CCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSD*********************************
Disordered Region (DISEMBL)
MEKVASTVHVNTKVLFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGG******************KTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDAQVVEQLAAN**********
Disordered Region (DISPRO)
***VASTVHVNTKVLFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTD***V****************
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKVASTVHVNTKVLFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDAQVVEQLAANSGGNNSTAVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q9C7F7	193	Uncharacterized GPI-ancho	no	no	0.632	0.481	0.298	8e-06

>sp|Q9C7F7|UGPI5_ARATH Uncharacterized GPI-anchored protein At1g27950 OS=Arabidopsis thaliana GN=At1g27950 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 38  CGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFK---M 94
           C       + CL F  GKA  PS  CC ++     +  KCLC +++         K   +
Sbjct: 35  CNQDFQKVTLCLDFATGKATIPSKKCCDAVEDIKERDPKCLCFVIQQAKTGGQALKDLGV 94

Query: 95  NATLALSLP-SVRHAPATVSDCPALLNLPPNSTDAQV 130
                + LP S +   A++++CP LL + P+S DA V
Sbjct: 95  QEDKLIQLPTSCQLHNASITNCPKLLGISPSSPDAAV 131

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
224091567	122	predicted protein [Populus trichocarpa]	0.809	0.975	0.613	1e-35
147790626	595	hypothetical protein VITISV_016657 [Viti	0.911	0.225	0.507	1e-31
225450281	188	PREDICTED: uncharacterized GPI-anchored	0.911	0.712	0.507	1e-30
224120938	197	predicted protein [Populus trichocarpa]	0.938	0.700	0.463	3e-30
225435694	188	PREDICTED: non-specific lipid-transfer p	0.884	0.691	0.473	4e-30
297746435	171	unnamed protein product [Vitis vinifera]	0.802	0.690	0.508	1e-29
351724279	182	uncharacterized protein LOC100305590 pre	0.836	0.675	0.471	4e-29
255542275	133	lipid binding protein, putative [Ricinus	0.782	0.864	0.521	3e-28
449489104	186	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.768	0.607	0.530	9e-28
449436236	197	PREDICTED: uncharacterized GPI-anchored	0.891	0.664	0.463	2e-27

>gi|224091567|ref|XP_002309285.1| predicted protein [Populus trichocarpa] gi|222855261|gb|EEE92808.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/119 (61%), Positives = 88/119 (73%)

Query: 17  TVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRK 76
           ++ ++    FV SD    ++ C +QLA  SACLPFVGG  K P+PTCCS + +E SKT K
Sbjct: 4   SIVVLMMFNFVFSDLAADKRECNEQLASLSACLPFVGGDTKVPTPTCCSGLRQEISKTEK 63

Query: 77  CLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDAQVVEQLA 135
           CLC+LVKDRNEP  GFK+NATLALSLPS+ HAPA VS CP +L+L PNSTDAQV E  A
Sbjct: 64  CLCILVKDRNEPDLGFKINATLALSLPSICHAPANVSACPEMLHLAPNSTDAQVFEDFA 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790626|emb|CAN59826.1| hypothetical protein VITISV_016657 [Vitis vinifera]

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/136 (50%), Positives = 90/136 (66%), Gaps = 2/136 (1%)

Query: 9   HVNTKVLFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSIT 68
           H    +L  V +V +   V SD  K ++ C +QL   + CLP+VGG AK+P+P CCS + 
Sbjct: 4   HCTFMILVIVSMVITC--VTSDSAKDKQECTEQLVGMATCLPYVGGDAKAPTPDCCSGLK 61

Query: 69  KEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDA 128
           +   K +KCLC+++KDRN+P  G  +NATLAL LPSV HAPA VS CPALL+L PNS DA
Sbjct: 62  QVLQKNKKCLCVIIKDRNDPDLGLNLNATLALGLPSVCHAPANVSQCPALLHLAPNSPDA 121

Query: 129 QVVEQLAANSGGNNST 144
           QV  Q A +S G  S+
Sbjct: 122 QVFYQFANSSNGTASS 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450281|ref|XP_002270671.1| PREDICTED: uncharacterized GPI-anchored protein At1g27950 [Vitis vinifera] gi|297741205|emb|CBI32156.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/136 (50%), Positives = 90/136 (66%), Gaps = 2/136 (1%)

Query: 9   HVNTKVLFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSIT 68
           H    +L  V +V +   V SD  K ++ C +QL   + CLP+VGG AK+P+P CCS + 
Sbjct: 4   HCTFMILVIVSMVITC--VTSDSAKDKQECTEQLVGMATCLPYVGGDAKAPTPDCCSGLK 61

Query: 69  KEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDA 128
           +   K +KCLC+++KDRN+P  G  +NATLAL LPSV HAPA VS CPALL+L PNS DA
Sbjct: 62  QVLQKNKKCLCVIIKDRNDPDLGLNLNATLALGLPSVCHAPANVSQCPALLHLAPNSPDA 121

Query: 129 QVVEQLAANSGGNNST 144
           QV  Q A +S G  S+
Sbjct: 122 QVFYQFANSSNGTASS 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120938|ref|XP_002330863.1| predicted protein [Populus trichocarpa] gi|222872685|gb|EEF09816.1| predicted protein [Populus trichocarpa]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/138 (46%), Positives = 88/138 (63%)

Query: 1   MEKVASTVHVNTKVLFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPS 60
           M+  +    +   +   V +        +  +K  + C +QL   + CLP+VGG AK+P+
Sbjct: 1   MDSHSHYTTIRLTMFGIVLMSVMVSLAMAGKDKDSEECAEQLVGLATCLPYVGGDAKAPT 60

Query: 61  PTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLN 120
           P CC+ + +     +KCLC+++KDRN+P  G K+NATLALSLPSV HAPA VS CPALLN
Sbjct: 61  PDCCNGLKQVLKDNKKCLCVIIKDRNDPELGLKINATLALSLPSVCHAPANVSQCPALLN 120

Query: 121 LPPNSTDAQVVEQLAANS 138
           LPPNS DAQ+  QLA +S
Sbjct: 121 LPPNSPDAQIFYQLANSS 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435694|ref|XP_002283442.1| PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Vitis vinifera]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/133 (47%), Positives = 89/133 (66%), Gaps = 3/133 (2%)

Query: 14  VLFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSK 73
           +L  + ++ SA    +DF K R+ C DQL   + CLP+VGG+ KSP+  CC+ + +   K
Sbjct: 13  MLVIMMLLMSA---SADFAKDREECADQLVGLATCLPYVGGEGKSPTLDCCTGLKQVLQK 69

Query: 74  TRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDAQVVEQ 133
            RKCLC+L+KDRN+P  G K+NATLA+ LPS  HAPA +S CPALL LP  S DA++ E+
Sbjct: 70  ARKCLCILIKDRNDPNLGLKINATLAMGLPSACHAPANISACPALLQLPAGSPDAKIFEE 129

Query: 134 LAANSGGNNSTAV 146
              ++  + ST+V
Sbjct: 130 YGNSTAASKSTSV 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746435|emb|CBI16491.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 82/118 (69%)

Query: 29  SDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEP 88
           +DF K R+ C DQL   + CLP+VGG+ KSP+  CC+ + +   K RKCLC+L+KDRN+P
Sbjct: 8   ADFAKDREECADQLVGLATCLPYVGGEGKSPTLDCCTGLKQVLQKARKCLCILIKDRNDP 67

Query: 89  RHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDAQVVEQLAANSGGNNSTAV 146
             G K+NATLA+ LPS  HAPA +S CPALL LP  S DA++ E+   ++  + ST+V
Sbjct: 68  NLGLKINATLAMGLPSACHAPANISACPALLQLPAGSPDAKIFEEYGNSTAASKSTSV 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724279|ref|NP_001237564.1| uncharacterized protein LOC100305590 precursor [Glycine max] gi|255626001|gb|ACU13345.1| unknown [Glycine max]

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/123 (47%), Positives = 89/123 (72%)

Query: 25  GFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKD 84
           GF +SD +K R+GC D+L D ++C+P+VGG+AK+P+  CC+ +     +++KCLC+L+KD
Sbjct: 18  GFAKSDLSKDREGCADKLIDLASCVPYVGGEAKTPTIDCCTGLKAVLDRSKKCLCILIKD 77

Query: 85  RNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDAQVVEQLAANSGGNNST 144
           R++P  G K+NATLA+ LPS  H+PA ++ C  LL+L PNS DA+V E    ++  N+ST
Sbjct: 78  RDDPNLGIKINATLAIQLPSACHSPANITQCVDLLHLAPNSPDAKVFEGFQKSAKTNSST 137

Query: 145 AVT 147
            V+
Sbjct: 138 PVS 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542275|ref|XP_002512201.1| lipid binding protein, putative [Ricinus communis] gi|223548745|gb|EEF50235.1| lipid binding protein, putative [Ricinus communis]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 80/115 (69%)

Query: 24  AGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVK 83
           AGF  +D +K ++ C +QL   + CLP+VGG AKSP+P CC+ + +     +KCLC+++K
Sbjct: 2   AGFAMADADKDKEECAEQLVGLATCLPYVGGNAKSPTPDCCTGLKEVLKNNKKCLCVVIK 61

Query: 84  DRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDAQVVEQLAANS 138
           DRN+P  G K+N TLAL LP+V HA A VS CPALL+L PNS DAQV  Q   +S
Sbjct: 62  DRNDPDLGLKINVTLALGLPTVCHATANVSQCPALLHLAPNSPDAQVFYQFTKSS 116

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489104|ref|XP_004158216.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized GPI-anchored protein At1g27950-like [Cucumis sativus]

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 78/113 (69%)

Query: 26  FVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDR 85
           FV  D  K R+ C  QLA  + CLP+V G AK+P+P CCS + +     +KCLC++V+DR
Sbjct: 17  FVGGDDKKDREECTPQLAGMATCLPYVSGDAKAPTPDCCSGLKEVLKNDKKCLCVIVRDR 76

Query: 86  NEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDAQVVEQLAANS 138
           N+P  G ++N TLALSLP + HA A VS+CPALLN+P NS+DAQV  QL   S
Sbjct: 77  NDPDLGLQINVTLALSLPDICHATANVSNCPALLNMPSNSSDAQVFYQLEGKS 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436236|ref|XP_004135899.1| PREDICTED: uncharacterized GPI-anchored protein At1g27950-like [Cucumis sativus]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/138 (46%), Positives = 90/138 (65%), Gaps = 7/138 (5%)

Query: 13  KVLFTVFIV----TSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSIT 68
           K L+ + ++    +   FV  D  K R+ C  QLA  + CLP+V G AK+P+P CCS + 
Sbjct: 10  KWLWLIMLLLRSPSWVRFVGGDDKKDREECTPQLAGMATCLPYVSGDAKAPTPDCCSGLK 69

Query: 69  KEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDA 128
           +     +KCLC++V+DRN+P  G ++N TLALSLP + HA A VS+CPALLN+P NS+DA
Sbjct: 70  EVLQNDKKCLCVIVRDRNDPDLGLQINVTLALSLPDICHATANVSNCPALLNMPSNSSDA 129

Query: 129 QVVEQLAANSGGNNSTAV 146
           QV  QL     G +S+A+
Sbjct: 130 QVFYQLGK---GKSSSAL 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2050492	204	AT2G44300 [Arabidopsis thalian	0.802	0.578	0.487	5.7e-27
TAIR|locus:2035711	227	AT1G55260 [Arabidopsis thalian	0.959	0.621	0.416	9.4e-27
TAIR|locus:2050482	205	AT2G44290 [Arabidopsis thalian	0.809	0.580	0.467	1.2e-26
TAIR|locus:2076406	177	AT3G58550 [Arabidopsis thalian	0.761	0.632	0.5	3.2e-26
TAIR|locus:2031551	193	AT1G73890 [Arabidopsis thalian	0.877	0.668	0.310	3.9e-12
TAIR|locus:1006230669	171	AT1G03103 "AT1G03103" [Arabido	0.734	0.631	0.315	1.2e-10
TAIR|locus:2010479	193	LTPG1 "AT1G27950" [Arabidopsis	0.829	0.632	0.286	5.9e-09
TAIR|locus:2184817	158	AT5G09370 [Arabidopsis thalian	0.666	0.620	0.342	4.8e-07
TAIR|locus:2077001	170	AT3G22600 [Arabidopsis thalian	0.863	0.747	0.246	6.1e-07
TAIR|locus:2101044	193	LTPG2 "glycosylphosphatidylino	0.646	0.492	0.308	1.9e-05

TAIR|locus:2050492 AT2G44300 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 59/121 (48%), Positives = 83/121 (68%)

Query:    15 LFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKT 74
             L  V +V +A     D  K ++ C +QL   + CLP+V G+AKSP+P CCS + +  +  
Sbjct:    15 LIVVAMVVAAA---DDKTKDKEECTEQLVGMATCLPYVQGQAKSPTPDCCSGLKQVLNSN 71

Query:    75 RKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDAQVVEQL 134
             +KCLC++++DRN+P  G ++N +LAL+LPSV HA A V+ CPALL+L PNS DAQV  QL
Sbjct:    72 KKCLCVIIQDRNDPDLGLQINVSLALALPSVCHAAADVTKCPALLHLDPNSPDAQVFYQL 131

Query:   135 A 135
             A
Sbjct:   132 A 132

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2035711 AT1G55260 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 60/144 (41%), Positives = 91/144 (63%)

Query:     7 TVHVNTKVLFTVFIVTSA--GFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCC 64
             T+  +T+ LF   ++TS   GF  SD  + R+ C +QL + S C+P+VGG AK+P+  CC
Sbjct:    43 TMEKSTRTLFITIVITSMLLGFGNSDLAQDREECTNQLIELSTCIPYVGGDAKAPTKDCC 102

Query:    65 SSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPA-TVSDCPALLNLPP 123
             +   +   K+ KC+C+LV+D+++P+ G K+NATLA  LPS  H  A  ++DC ++L+LP 
Sbjct:   103 AGFGQVIRKSEKCVCILVRDKDDPQLGIKINATLAAHLPSACHITAPNITDCISILHLPR 162

Query:   124 NSTDAQVVEQLAANSGGNNSTAVT 147
             NST A+  E L       NST+ T
Sbjct:   163 NSTLAKEFENLGRIEDNYNSTSPT 186

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2050482 AT2G44290 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 57/122 (46%), Positives = 83/122 (68%)

Query:    14 VLFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSK 73
             ++    +V +AG   +D  K ++ C  QL   + CLP+V GKAKSP+P CCS + +  + 
Sbjct:    15 LIMVAMVVDAAG---ADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPDCCSGLKQVINS 71

Query:    74 TRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDAQVVEQ 133
               KCLC+++++RN+P  G ++N +LAL+LPSV HA A ++ CPALL+L PNS DAQV  Q
Sbjct:    72 DMKCLCMIIQERNDPDLGLQVNVSLALALPSVCHATADITKCPALLHLDPNSPDAQVFYQ 131

Query:   134 LA 135
             LA
Sbjct:   132 LA 133

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2076406 AT3G58550 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 57/114 (50%), Positives = 79/114 (69%)

Query:    27 VRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSK--TRKCLCLLVKD 84
             VRS+ ++  KGC D ++D  +CLPFV  KAK+P  TCCS++  +  K  TRKCLC LVKD
Sbjct:    27 VRSELSQDIKGCQDAMSDLYSCLPFVTNKAKAPDSTCCSTLKVKIDKGQTRKCLCTLVKD 86

Query:    85 RNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNSTDAQVVEQLAANS 138
             R++P  GFK++A  A+SLPS  H PA +S CP LL+L P+S  +Q+ +Q   +S
Sbjct:    87 RDDPGLGFKVDANRAMSLPSACHVPANISQCPDLLHLLPDSPASQIFKQFTESS 140

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2031551 AT1G73890 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 41/132 (31%), Positives = 68/132 (51%)

Query:    11 NTKVLFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKE 70
             ++ +L T+ I  SA F+R    +    C  +L   + C PFV G A+ P+  CC S+ + 
Sbjct:     3 SSTLLITLLISLSAFFLRMVLAQVPATCASRLLSLAPCGPFVQGFAQLPAQPCCDSLNQI 62

Query:    71 GSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPNS-TDAQ 129
              S+   CLCL + + +     F +N TLAL LP + + PA  S C +  + P  + +D+ 
Sbjct:    63 YSQEATCLCLFLNNTSTLSPAFPINQTLALQLPPLCNIPANSSTCSS--SFPGEAPSDSS 120

Query:   130 VVEQLAANSGGN 141
              V    ++S G+
Sbjct:   121 SVAPPPSSSTGS 132

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:1006230669 AT1G03103 "AT1G03103" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 35/111 (31%), Positives = 54/111 (48%)

Query:    14 VLFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSK 73
             ++  +  +  A F+       + GC D L   S CL ++ G + SPS +CC   +     
Sbjct:     1 MILAILALVIATFLYGGATTVQAGCRDTLTSLSPCLYYLNGGSSSPSWSCCRQFSTVVQS 60

Query:    74 TRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCPALLNLPPN 124
             + +CLC +V       +GFK N TLAL+LP+  +   T S  P+L N   N
Sbjct:    61 SPECLCSVVNSNESSFYGFKFNRTLALNLPTACNVQ-TPS--PSLCNTGGN 108

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2010479 LTPG1 "AT1G27950" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 37/129 (28%), Positives = 57/129 (44%)

Query:     8 VHVNTKVLFTVFIVTSAGFVRSDFNKGRKG--CGDQLADFSACLPFVGGKAKSPSPTCCS 65
             +H++  VL T+ IV S          G     C       + CL F  GKA  PS  CC 
Sbjct:     4 LHLHL-VLVTMTIVASIAAAAPAAPGGALADECNQDFQKVTLCLDFATGKATIPSKKCCD 62

Query:    66 SITKEGSKTRKCLCLLVKDRNEPRHGFK---MNATLALSLP-SVRHAPATVSDCPALLNL 121
             ++     +  KCLC +++         K   +     + LP S +   A++++CP LL +
Sbjct:    63 AVEDIKERDPKCLCFVIQQAKTGGQALKDLGVQEDKLIQLPTSCQLHNASITNCPKLLGI 122

Query:   122 PPNSTDAQV 130
              P+S DA V
Sbjct:   123 SPSSPDAAV 131

GO:0003674 "molecular_function" evidence=ND

GO:0006869 "lipid transport" evidence=IEA;IMP

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2184817 AT5G09370 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 37/108 (34%), Positives = 53/108 (49%)

Query:    27 VRSDFNKGRKGCGDQLADFSACLPFV--GGKAKSPSPTCCSSITKEGSKTRK-CLCLLVK 83
             V S +  G   C   +     CLPF+  GG A +P+ +CCSS+ K    T+  CLC  +K
Sbjct:    17 VSSPYVHGASDCDTLVITLFPCLPFISIGGTADTPTASCCSSL-KNILDTKPICLCEGLK 75

Query:    84 DRNEPRHGFKMNATLALSLPSV--RHAPATVSDCPALLNLPPNSTDAQ 129
                 P  G K+N T + +LP     +AP  VS C +L    P + + Q
Sbjct:    76 --KAPL-GIKLNVTKSATLPVACKLNAPP-VSACDSLPPASPPTANGQ 119

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2077001 AT3G22600 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 32/130 (24%), Positives = 56/130 (43%)

Query:    18 VFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKC 77
             VF+      + S     +  C + L   S CL ++ G + SP+  CC+ +++    +  C
Sbjct:     8 VFLTVFMAVMSSTMVSAQSSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRVVQSSPDC 67

Query:    78 LCLLVKDRNEPRHGFKMNATLALSLPSVRHAPAT-VSDCPALLNLPPNSTDAQVVEQLAA 136
             LC ++      + G  +N T AL LP   +     VS C        +++D+   E   +
Sbjct:    68 LCQVLNGGGS-QLGINVNQTQALGLPRACNVQTPPVSRCNTGGGGGGSTSDSPA-ESPNS 125

Query:   137 NSGGNNSTAV 146
             +  GN S  V
Sbjct:   126 SGPGNGSKTV 135

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2101044 LTPG2 "glycosylphosphatidylinositol-anchored lipid protein transfer 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 33/107 (30%), Positives = 48/107 (44%)

Query:    11 NTKVLFTVFIVTS-AGFVRSDFN----KGRKGCGDQLADF---SACLPFV----GGKAKS 58
             N  V+  V IV S  G V +  +     G  G  D +A+    + CL +V    GG A  
Sbjct:     3 NVVVIAVVLIVASLTGHVSAQMDMSPSSGPSGAPDCMANLMNMTGCLSYVTVGEGGGAAK 62

Query:    59 PSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSV 105
             P  TCC ++      + +CLC L+      + G K++   AL LP V
Sbjct:    63 PDKTCCPALAGLVESSPQCLCYLLSGDMAAQLGIKIDKAKALKLPGV 109

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VI.2248.1 hypothetical protein (122 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	4e-09
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	4e-05
cd01960	89	cd01960, nsLTP1, nsLTP1: Non-specific lipid-transf	5e-04
pfam14368	95	pfam14368, LTP_2, Probable lipid transfer	9e-04
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	0.001

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 49.7 bits (119), Expect = 4e-09
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 45  FSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPS 104
            + CL ++ G A +P   CCS +        KCLC  +        G K NAT AL+LP+
Sbjct: 1   LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLK-NATRALALPA 59

Query: 105 V 105
            
Sbjct: 60  A 60

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 39.1 bits (91), Expect = 4e-05
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 38  CGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNAT 97
           CG  L   + C  ++ G  + PS  CCS + +  +   +C C  ++       G  +N  
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQVPSQQCCSQLRQLQA---QCRCTAIRAIVLGIEG--INPQ 55

Query: 98  LALSLPSV 105
            A SLPS+
Sbjct: 56  AAASLPSM 63

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|238926 cd01960, nsLTP1, nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 38  CGDQLADFSACLPFVGGKAKSPSPTCCSSIT--KEGSKT---RKCLCLLVKDRNEPRHGF 92
           CG   +  + CL ++ G   +PSP CCS +      +KT   R+  C  +K         
Sbjct: 3   CGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKS--AAAGIS 60

Query: 93  KMNATLALSLPS 104
            +N   A  LP 
Sbjct: 61  GLNPGRAAGLPG 72

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans. Length = 89

>gnl|CDD|222713 pfam14368, LTP_2, Probable lipid transfer

 Score = 36.3 bits (84), Expect = 9e-04
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 43  ADFSACLPFV-GGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALS 101
                CL +       +PSP CC+++         CLC LV   +    GF +N T A++
Sbjct: 24  DSLLPCLGYCYVNGTAAPSPACCAALKAAVKADVPCLCDLVT--SPLAAGFGINLTRAVA 81

Query: 102 LPSVRHAPATVSDC 115
           LP      +  S C
Sbjct: 82  LPKACGLTSPPSKC 95

The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways. Length = 95

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 38  CGDQLADFSACLPFVGGKAKS--PSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGF-KM 94
           CG  L   + CL ++ G ++   PS  CCS +   G  + +C CL ++           +
Sbjct: 1   CGQVLLQLAPCLSYLVGGSRGAPPSQQCCSQL--RGLNSAQCRCLALRAAVLGILEIPGL 58

Query: 95  NATLALSLPSVRHAPATVSDC 115
           NA  A SLPS    P   +DC
Sbjct: 59  NAQNAASLPSACGVPPPYTDC 79

Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.6
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.56
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.56
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.53
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.47
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	99.15
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.7
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	95.67
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	94.42

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.60  E-value=6.6e-16  Score=106.60  Aligned_cols=77  Identities=29%  Similarity=0.626  Sum_probs=60.9

Q ss_pred             CchhhhcCccCchhhhcCCCCCCCHHhHHHHHhhcCC-----CCccccccccccCCCCCCCC-CCHHHHhhccCCCCCCC
Q 043293           37 GCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSK-----TRKCLCLLVKDRNEPRHGFK-MNATLALSLPSVRHAPA  110 (147)
Q Consensus        37 ~C~~~~~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~-----~~~ClC~~l~~~~~~~~g~~-in~~~A~~LP~~Cgv~~  110 (147)
                      +|..++..|.||++|++|.+..|++.||++++++++.     +..|+|+.+++...   ++. ||.++|++||++||++.
T Consensus         2 ~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~---~~~~i~~~~a~~LP~~C~v~~   78 (89)
T cd01960           2 SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAA---GISGLNPGRAAGLPGKCGVSI   78 (89)
T ss_pred             CHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhccccccc---ccCCCCHHHHHhChHhcccCC
Confidence            6999999999999999987778999999999998754     23455555776432   333 99999999999999975


Q ss_pred             --CCC---CCC
Q 043293          111 --TVS---DCP  116 (147)
Q Consensus       111 --~is---~C~  116 (147)
                        +++   ||+
T Consensus        79 ~~~i~~~~dC~   89 (89)
T cd01960          79 PYPISPSTDCS   89 (89)
T ss_pred             CCCCCCCCCCC
Confidence              443   664

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.56  E-value=2.8e-15  Score=96.82  Aligned_cols=63  Identities=32%  Similarity=0.618  Sum_probs=53.3

Q ss_pred             ccCchhhhcCCCCCCCHHhHHHHHhhcCCCCccccccccccCCCCCCCCCCHHHHhhccCCCCC
Q 043293           45 FSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHA  108 (147)
Q Consensus        45 L~pCl~yltg~~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv  108 (147)
                      |.||++|++|++..|++.||++++++++.++.|+|+++++......+ .+|.++++.||++||+
T Consensus         1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~-~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLG-LKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccccccC-cccHHHHHhchHhcCC
Confidence            67999999987788999999999999988899999999885433223 1379999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.56  E-value=3.2e-16  Score=108.26  Aligned_cols=77  Identities=32%  Similarity=0.671  Sum_probs=48.7

Q ss_pred             cCCCCchhhhcCccCc---hhhhcCCCCCCCHHhHHHHHhhcCCCCccccccccccCCCCCCCCCCHHHHhhccCCCCCC
Q 043293           33 KGRKGCGDQLADFSAC---LPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAP  109 (147)
Q Consensus        33 ~~~~~C~~~~~~L~pC---l~yltg~~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv~  109 (147)
                      ....+|.+   +|.+|   +.|+++ +..|++.||++++++.+.+..|||+++++..  ..+++||.++++.||++||++
T Consensus        17 ~~~~~c~~---~l~~c~~~~~~~~~-~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~--~~~~~in~~~a~~Lp~~Cg~~   90 (96)
T PF14368_consen   17 ACCCSCAN---SLLPCCPCLCYVTG-GPAPSAACCSALKSVVQADPPCLCQLLNSPG--APGFGINVTRALALPAACGVP   90 (96)
T ss_dssp             -BTTB-HC---CCCHH--HHHHHCC------HHHHHHHCC----HCCHHHCCCC-CC--HCHHCCTCHHHHHHHHHCTSS
T ss_pred             CCcchhHH---HHhccccchhccCC-CCCCCHHHHHHHHHhccCCCCCHHHhcCccc--cccCCcCHHHHHHHHHHcCCC
Confidence            35567755   46665   788885 6789999999999998888999999998742  134459999999999999999


Q ss_pred             CCCCCC
Q 043293          110 ATVSDC  115 (147)
Q Consensus       110 ~~is~C  115 (147)
                      .+.++|
T Consensus        91 ~~~~~C   96 (96)
T PF14368_consen   91 VPPSKC   96 (96)
T ss_dssp             -S----
T ss_pred             CCCCCC
Confidence            865666

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.53  E-value=5.1e-15  Score=98.99  Aligned_cols=71  Identities=27%  Similarity=0.584  Sum_probs=56.3

Q ss_pred             chhhhcCccCchhhhcCCC--CCCCHHhHHHHHhhcCCCCccccccccccCCCCCCCCCCHHHHhhccCCCCCCCCCCCC
Q 043293           38 CGDQLADFSACLPFVGGKA--KSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDC  115 (147)
Q Consensus        38 C~~~~~~L~pCl~yltg~~--~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv~~~is~C  115 (147)
                      |+..+..|.||++|+++++  ..|++.||++++++   +..|+|.+++.   ..+. .||.++|++||++||++++.++|
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~---~~~~-~i~~~~a~~Lp~~Cgv~~p~~~C   73 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTS---LVLQ-IIDPDKAVYLPAKCGLPLPPSSC   73 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCC---Cccc-ccCHHHHHHHHHHcCCCCCCCCC
Confidence            5566678999999999755  46999999999985   45699987764   2233 39999999999999999844666

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.47  E-value=2.3e-14  Score=94.44  Aligned_cols=61  Identities=28%  Similarity=0.606  Sum_probs=52.7

Q ss_pred             cCccCchhhhcCCCCCCCHHhHHHHHhhcCCCCccccccccccCCCCCCCCCCHHHHhhccCCCCCCCC
Q 043293           43 ADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPAT  111 (147)
Q Consensus        43 ~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv~~~  111 (147)
                      .+|.+|++|+++ +..||++||+.+|+    +..|||+|+++   +.++.+||.++|++||++||+++|
T Consensus         4 ~~L~~C~~ai~~-~~~Ps~~CC~~Lk~----~~~CLC~y~~~---p~l~~~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILG-GSPPSAACCAKLKE----QQSCLCQYAKN---PSLKQYVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhC-CCCCCHHHHHHHhc----CCCCeeeeecC---ccHHhhcCcHHHHHHHHHcCCCCC
Confidence            589999999997 46899999999997    34899999887   445556999999999999999874

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=99.15  E-value=5e-11  Score=78.18  Aligned_cols=76  Identities=32%  Similarity=0.626  Sum_probs=58.4

Q ss_pred             chhhhcCccCchhhhcCC--CCCCCHHhHHHHHhhcCCCCccccccccccCCCCCC-CCCCHHHHhhccCCCCCCCCCCC
Q 043293           38 CGDQLADFSACLPFVGGK--AKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHG-FKMNATLALSLPSVRHAPATVSD  114 (147)
Q Consensus        38 C~~~~~~L~pCl~yltg~--~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g-~~in~~~A~~LP~~Cgv~~~is~  114 (147)
                      |...+..+.+|++|+++.  ...|+..||++++.+.  +..|+|.+++.......+ ..+|..++..||+.||+..+.+.
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~~~   78 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPYTD   78 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCCCC
Confidence            666777888999999976  4678999999999985  678999988764222110 02599999999999999875444


Q ss_pred             C
Q 043293          115 C  115 (147)
Q Consensus       115 C  115 (147)
                      |
T Consensus        79 C   79 (79)
T smart00499       79 C   79 (79)
T ss_pred             C
Confidence            4

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.70  E-value=2.1e-10  Score=78.51  Aligned_cols=70  Identities=26%  Similarity=0.609  Sum_probs=54.2

Q ss_pred             cCccCchhhhcCCCCCCCHHhHHHHHhhcCCCCccccccccccCCCCC--------CCCCCHHHHhhccCCCCCCCCCCC
Q 043293           43 ADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRH--------GFKMNATLALSLPSVRHAPATVSD  114 (147)
Q Consensus        43 ~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~--------g~~in~~~A~~LP~~Cgv~~~is~  114 (147)
                      ..|.+|..|+++....|+..||++|+++   +..|+|..|+.......        ...++..+|..||+.||+..+..+
T Consensus        13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~~~   89 (90)
T PF00234_consen   13 VRLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPYTD   89 (90)
T ss_dssp             SHHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSSS-
T ss_pred             ccccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            4589999999986668999999999998   67999998876322210        024889999999999999875434


Q ss_pred             C
Q 043293          115 C  115 (147)
Q Consensus       115 C  115 (147)
                      |
T Consensus        90 C   90 (90)
T PF00234_consen   90 C   90 (90)
T ss_dssp             G
T ss_pred             C
Confidence            4

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=95.67  E-value=0.0036  Score=43.20  Aligned_cols=75  Identities=24%  Similarity=0.471  Sum_probs=49.0

Q ss_pred             chhhhcCccCchhhhc----CCCCCCCHHhHHHHHhhcCCC-CccccccccccCCCCCC-CCCCHHHHh-hccCCCCCCC
Q 043293           38 CGDQLADFSACLPFVG----GKAKSPSPTCCSSITKEGSKT-RKCLCLLVKDRNEPRHG-FKMNATLAL-SLPSVRHAPA  110 (147)
Q Consensus        38 C~~~~~~L~pCl~ylt----g~~~~Ps~~CC~~l~~l~~~~-~~ClC~~l~~~~~~~~g-~~in~~~A~-~LP~~Cgv~~  110 (147)
                      |.....+|.-|.+.+.    ..+..+..+||.-++.+.+.+ ..|||..+|..   .+| +++|....+ .|-..||-..
T Consensus         2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~---vlg~i~~~ipv~l~~lln~CGk~~   78 (85)
T PF14547_consen    2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKAN---VLGLINVNIPVALNLLLNACGKTV   78 (85)
T ss_pred             CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhh---cccccccccccHHHHHHHHhCCcC
Confidence            4444457778888872    113346789999999998764 67999888763   355 444444343 5677798876


Q ss_pred             CC-CCC
Q 043293          111 TV-SDC  115 (147)
Q Consensus       111 ~i-s~C  115 (147)
                      |. .+|
T Consensus        79 p~gf~C   84 (85)
T PF14547_consen   79 PSGFTC   84 (85)
T ss_pred             cCCCcC
Confidence            43 355

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=94.42  E-value=0.026  Score=38.93  Aligned_cols=72  Identities=22%  Similarity=0.401  Sum_probs=47.8

Q ss_pred             CchhhhcCccCchhhhcCC----CCCCCHHhHHHHHhhcCCC-CccccccccccCCCCCCCCCCHHHHhh-ccCCCCCCC
Q 043293           37 GCGDQLADFSACLPFVGGK----AKSPSPTCCSSITKEGSKT-RKCLCLLVKDRNEPRHGFKMNATLALS-LPSVRHAPA  110 (147)
Q Consensus        37 ~C~~~~~~L~pCl~yltg~----~~~Ps~~CC~~l~~l~~~~-~~ClC~~l~~~~~~~~g~~in~~~A~~-LP~~Cgv~~  110 (147)
                      .|-....+|--|..-+..-    +..|..+||.-++.+.+.+ ..|+|..+|.   ..+|+++|....+. |-..||-..
T Consensus         3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaika---n~lgi~~~~pv~l~llln~CGk~~   79 (85)
T cd01958           3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKA---NILGISINIPVALSLLLNSCGRNV   79 (85)
T ss_pred             CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeec---cccCcccccChhHHHHHHHHcCcC
Confidence            3554445677777766421    3457789999999997764 6799988886   34676555555553 345688765


Q ss_pred             C
Q 043293          111 T  111 (147)
Q Consensus       111 ~  111 (147)
                      |
T Consensus        80 P   80 (85)
T cd01958          80 P   80 (85)
T ss_pred             C
Confidence            4

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	9e-08
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	6e-04
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	7e-04
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	8e-04

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 46.4 bits (110), Expect = 9e-08
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 38  CGDQLADFSACLPFVGGKAKSPSPTCCSSITK-----EGSKTRKCLCLLVKDRNEPRHGF 92
           CG   +  + C+ +  G+   PS  CCS +         +  R+  C  +K+      G 
Sbjct: 4   CGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGL 63

Query: 93  KMNATLALSLPS 104
             NA  A S+PS
Sbjct: 64  --NAGNAASIPS 73

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 8/72 (11%)

Query: 38  CGDQLADFSACLPFVGGKAKSPSPTCCSSITK--EGSKT---RKCLCLLVKDRNEPRHGF 92
           CG   +    CL +V G    PS  CC  +      +++   R+  C  +K      H  
Sbjct: 3   CGHVDSLVRPCLSYVQGGP-GPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNL 61

Query: 93  KMNATLALSLPS 104
             N   A S+P 
Sbjct: 62  --NEDNARSIPP 71

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score = 35.6 bits (82), Expect = 7e-04
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 6/71 (8%)

Query: 38  CGDQLADFSACLPFVGGKAKSPSPTCCSSITKEG----SKTRKCLCLLVKDRNEPRHGFK 93
           CG    + + C+ F+      P   C            +  R+ +C  +K       G  
Sbjct: 3   CGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGI- 61

Query: 94  MNATLALSLPS 104
            N   A +LP 
Sbjct: 62  -NPNNAEALPG 71

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana} Length = 77

 Score = 35.4 bits (81), Expect = 8e-04
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 38  CGDQLADFSACLPFV-GGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNA 96
           CG    + + C P V      SPS  CC+++         CLC           G  ++ 
Sbjct: 5   CGMSQDELNECKPAVSKENPTSPSQPCCTALQHAD---FACLCGYKNSPWLGSFG--VDP 59

Query: 97  TLALSLPS 104
            LA +LP 
Sbjct: 60  ELASALPK 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.69
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.68
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.66
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.66
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.66
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.65
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.58
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.54
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.54
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	93.59
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	92.38
1s6d_A	103	Albumin 8; all helix, folded LEAF, right-handed su	85.16
1pnb_B	75	Napin BNIB; napin IA and IB, albumin SEED protein,	82.54

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.69  E-value=9.9e-19  Score=121.40  Aligned_cols=81  Identities=27%  Similarity=0.568  Sum_probs=66.4

Q ss_pred             CCCchhhhcCccCchhhhcCCCCCCCHHhHHHHHhhcCC-----CCccccccccccCCCCCCCCCCHHHHhhccCCCCCC
Q 043293           35 RKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSK-----TRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAP  109 (147)
Q Consensus        35 ~~~C~~~~~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~-----~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv~  109 (147)
                      +.+|++++..|.||++|++| +..|++.||++++++++.     ++.|+|+.+++.+....+  ||.++|.+||++||++
T Consensus         1 AisC~~v~~~L~pCl~Yv~g-~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~--in~~~a~~LP~~CgV~   77 (93)
T 2ljo_A            1 AISCGAVTSDLSPCLTYLTG-GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITK--LNTNNAAALPGKCGVN   77 (93)
T ss_dssp             CCSSHHHHHHHHHHHHHHTT-SSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTT--CCHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHhHHHHHcC-CCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCC--cCHHHHHhhhHhcCCC
Confidence            36899999999999999998 457999999999999764     346777779886544334  9999999999999996


Q ss_pred             C--CCC---CCCCC
Q 043293          110 A--TVS---DCPAL  118 (147)
Q Consensus       110 ~--~is---~C~~~  118 (147)
                      .  +|+   ||+++
T Consensus        78 ~p~~Is~~~dC~~v   91 (93)
T 2ljo_A           78 IPYKISTTTNCNTV   91 (93)
T ss_dssp             CSSCCSTTCCGGGC
T ss_pred             CCCCCCCCCCCCCC
Confidence            4  555   99885

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.68  E-value=1.9e-18  Score=119.71  Aligned_cols=79  Identities=28%  Similarity=0.622  Sum_probs=64.2

Q ss_pred             CCchhhhcCccCchhhhcCCCCCCCHHhHHHHHhhcC-------CCCccccccccccCCCCCCCCCCHHHHhhccCCCCC
Q 043293           36 KGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGS-------KTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHA  108 (147)
Q Consensus        36 ~~C~~~~~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~-------~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv  108 (147)
                      .+|+.++..|.||++|++|++..|++.||++++++++       .+..|+|  ++... ..++ .||.++|++||++||+
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC--~~~~~-~~~~-~in~~~A~~LP~~C~v   77 (93)
T 1afh_A            2 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVS-GLNAGNAASIPSKCGV   77 (93)
T ss_dssp             CSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHH--HHHHH-TTST-TCCHHHHHHHHHHHHC
T ss_pred             CChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEe--ecccc-cccc-CcCHHHHHHHHHHcCC
Confidence            5799999999999999998777899999999999963       2368999  44432 2243 4999999999999999


Q ss_pred             CC--CCC---CCCCC
Q 043293          109 PA--TVS---DCPAL  118 (147)
Q Consensus       109 ~~--~is---~C~~~  118 (147)
                      +.  +|+   ||+++
T Consensus        78 ~~p~~is~~~dC~~v   92 (93)
T 1afh_A           78 SIPYTISTSTDCSRV   92 (93)
T ss_dssp             CCSSCCSTTCCSSSC
T ss_pred             CCCCCCCCCCCCccC
Confidence            74  555   99885

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.66  E-value=3.5e-18  Score=117.83  Aligned_cols=78  Identities=27%  Similarity=0.529  Sum_probs=63.2

Q ss_pred             CCchhhhcCccCchhhhcCCCCCCCHHhHHHHHhhcCC-------CCccccccccccCCCCCCCCCCHHHHhhccCCCCC
Q 043293           36 KGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSK-------TRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHA  108 (147)
Q Consensus        36 ~~C~~~~~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~-------~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv  108 (147)
                      .+|+.++..|.||++|++|++. |+++||++++++++.       +..|+|  +++.+.. ++ .||.++|++||++||+
T Consensus         1 i~C~~v~~~L~pCl~y~~~~~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClC--lk~~~~~-~~-~in~~~A~~LP~~C~v   75 (90)
T 1bwo_A            1 IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNC--LKGIARG-IH-NLNEDNARSIPPKCGV   75 (90)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCSC-CCHHHHHHHHHHHHHCCSHHHHHHHHHH--HHHHHTT-CT-TCCHHHHHTHHHHHTC
T ss_pred             CCHHHHHHhhcccHHHHcCCCC-CCHHHhHHHHHHHhhccCCCCCCccCcC--ccCchhc-cC-CcCHHHHHHHHHHcCC
Confidence            3699999999999999998665 999999999998742       478999  6654322 33 5999999999999999


Q ss_pred             CC--CCC---CCCCC
Q 043293          109 PA--TVS---DCPAL  118 (147)
Q Consensus       109 ~~--~is---~C~~~  118 (147)
                      ++  +|+   ||+++
T Consensus        76 ~~p~~is~~~dC~~v   90 (90)
T 1bwo_A           76 NLPYTISLNIDCSRV   90 (90)
T ss_dssp             CCSSCCCTTCCGGGC
T ss_pred             CCCCCCCCCCCCCCC
Confidence            74  555   88763

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.66  E-value=3.1e-18  Score=118.49  Aligned_cols=78  Identities=24%  Similarity=0.590  Sum_probs=63.2

Q ss_pred             CCchhhhcCccCchhhhcCCCCCCCHHhHHHHHhhc-------CCCCccccccccccCCCCCCCCCCHHHHhhccCCCCC
Q 043293           36 KGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEG-------SKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHA  108 (147)
Q Consensus        36 ~~C~~~~~~L~pCl~yltg~~~~Ps~~CC~~l~~l~-------~~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv  108 (147)
                      .+|+.++..|.||++|++|++ .|++.||+++++++       +.++.|+|.+...   +.++ .||.++|++||++||+
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~---~~~~-~in~~~A~~LP~~Cgv   76 (92)
T 2alg_A            2 ITCGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLS---ASVP-GVNPNNAAALPGKCGV   76 (92)
T ss_dssp             CCHHHHHHHHGGGHHHHHHCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH---HHST-TCCHHHHHHHHHHTTC
T ss_pred             CChHHHHHhccCcHHHHcCCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcc---cccC-ccChHHHHHHHHHcCC
Confidence            579999999999999999754 58999999999987       3457899964322   3343 5999999999999999


Q ss_pred             CC--CCC---CCCCC
Q 043293          109 PA--TVS---DCPAL  118 (147)
Q Consensus       109 ~~--~is---~C~~~  118 (147)
                      ++  +|+   ||+++
T Consensus        77 ~~p~~is~~~dC~~v   91 (92)
T 2alg_A           77 SIPYKISASTNCATV   91 (92)
T ss_dssp             CCSSCSSTTSCGGGC
T ss_pred             CCCCCCCCCCCCccC
Confidence            75  555   99874

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.66  E-value=4.4e-18  Score=117.58  Aligned_cols=77  Identities=22%  Similarity=0.499  Sum_probs=63.5

Q ss_pred             CCchhhhcCccCchhhhcCCCCCCCHHhHHHHHhhcCC-------CCccccccccccCCCCCCCCCCHHHHhhccCCCCC
Q 043293           36 KGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSK-------TRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHA  108 (147)
Q Consensus        36 ~~C~~~~~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~-------~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv  108 (147)
                      .+|+.++..|.||++|++|++. |+ .||++++++++.       ++.|+|  +++.+ ..++ .||.++|++||++||+
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClC--lk~~~-~~~~-~in~~~A~~LP~~C~v   75 (91)
T 1t12_A            2 ITCGQVTSNLAPCLAYLRNTGP-LG-RCCGGVKALVNSARTTEDRQIACTC--LKSAA-GAIS-GINLGKAAGLPSTCGV   75 (91)
T ss_dssp             CCHHHHHHHTHHHHHHHTTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHH--HHHHH-HHCT-TCCHHHHHHHHHHTTC
T ss_pred             CChHHHHHhccCcHHHHcCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCC--ccccc-cccC-CcChhHHHHHHHHcCC
Confidence            5799999999999999998766 88 999999999764       579999  56532 2243 5999999999999999


Q ss_pred             CC--CCC---CCCCC
Q 043293          109 PA--TVS---DCPAL  118 (147)
Q Consensus       109 ~~--~is---~C~~~  118 (147)
                      +.  +|+   ||+++
T Consensus        76 ~~p~~is~~~dC~~v   90 (91)
T 1t12_A           76 NIPYKISPSTDCSKV   90 (91)
T ss_dssp             CCSSCSSSSSCCTTC
T ss_pred             CCCCCCCCCCCCccC
Confidence            74  555   99885

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.65  E-value=1.1e-17  Score=115.42  Aligned_cols=78  Identities=21%  Similarity=0.490  Sum_probs=63.4

Q ss_pred             CCchhhhcCccCchhhhcCCCCCCCHHhHHHHHhhcCC-------CCccccccccccCCCCCCCCCCHHHHhhccCCCCC
Q 043293           36 KGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSK-------TRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHA  108 (147)
Q Consensus        36 ~~C~~~~~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~-------~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv  108 (147)
                      .+|+.++..|.||++|++|++. |++.||++++++++.       +..|+|  +++.+ ..++ .||.++|++||++||+
T Consensus         1 i~C~~v~~~L~pCl~yv~~~~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC--~k~~~-~~~~-~in~~~A~~LP~~Cgv   75 (91)
T 1siy_A            1 MTCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSC--LKAAA-GAVR-GINPNNAEALPGKCGV   75 (91)
T ss_dssp             CCTTTTHHHHHHHHHHHTSCSC-CCHHHHHHHHHHHTTTCSSHHHHHHHHH--HHHHT-TCCS-SCCHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhccCcHHHHhCCCC-CcHHHHHHHHHHHhhhccCCCCCcCCcc--cCCcc-cccC-CcCHHHHHHHHHHcCC
Confidence            3699999999999999998655 999999999998753       468999  56643 2242 5999999999999999


Q ss_pred             CC--CCC---CCCCC
Q 043293          109 PA--TVS---DCPAL  118 (147)
Q Consensus       109 ~~--~is---~C~~~  118 (147)
                      ++  +|+   ||+++
T Consensus        76 ~~p~~is~~~dC~~v   90 (91)
T 1siy_A           76 NIPYKISTSTNCNSI   90 (91)
T ss_dssp             CCSSCSCTTSCSSTT
T ss_pred             CCCCCCCCCCCCccC
Confidence            74  555   99885

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.58  E-value=6.5e-17  Score=108.25  Aligned_cols=73  Identities=25%  Similarity=0.464  Sum_probs=59.6

Q ss_pred             CCCchhhhcCccCchhhhcC-CCCCCCHHhHHHHHhhcCCCCccccccccccCCCCCCCCCCHHHHhhccCCCCCCCCC
Q 043293           35 RKGCGDQLADFSACLPFVGG-KAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATV  112 (147)
Q Consensus        35 ~~~C~~~~~~L~pCl~yltg-~~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv~~~i  112 (147)
                      ..+|+.++..|.||++|+++ ....|+++||+++|+   .+..|||.++++.....+|  ||.++|+.||++||+++|.
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~---~~~~ClC~~~~~~~~~~~g--in~~~A~~LP~~Cgv~~p~   75 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQH---ADFACLCGYKNSPWLGSFG--VDPELASALPKQCGLANAP   75 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTT---CCHHHHHTTTTCHHHHHHT--BCHHHHHHHHHHTTCSCCC
T ss_pred             cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHh---cCcCCcCcccCCcchhhcC--cCHHHHHHHHHHcCCCCCC
Confidence            35799999999999999997 347899999999997   3579999887752112234  9999999999999998753

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.54  E-value=6.8e-16  Score=101.49  Aligned_cols=67  Identities=28%  Similarity=0.619  Sum_probs=55.4

Q ss_pred             CchhhhcCccCchhhhcCCCCCCCHHhHHHHHhhcCCCCccccccccccCCCCCCCCCCHHHHhhccCCCCCCCCCCCC
Q 043293           37 GCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDC  115 (147)
Q Consensus        37 ~C~~~~~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv~~~is~C  115 (147)
                      .|+.  ..|.||++|++++ ..|+++||++||+.    ..|+|+|+++.   .++.+||.++|++||++||+++|  +|
T Consensus         2 ~C~~--~~L~pC~~~v~~~-~~Ps~~CC~~lk~~----~~ClC~~~k~~---~~~~~in~~~A~~Lp~~Cgv~~P--~C   68 (69)
T 1l6h_A            2 GCNA--GQLTVCTGAIAGG-ARPTAACCSSLRAQ----QGCFCQFAKDP---RYGRYVNSPNARKAVSSCGIALP--TC   68 (69)
T ss_dssp             CSTT--TTHHHHHHHHTTC-CSTTHHHHHHHHHH----HHHHHHHTTCS---SHHHHTTTTTGGGCCCCCSSCSC--CC
T ss_pred             CCCh--hhcccCHHHHcCC-CCCCHHHHHhhCCC----CCCCCccccCc---ccccccCHHHHHHHHHHcCCCCC--CC
Confidence            4655  5899999999984 57999999999984    68999999873   34445999999999999999875  55

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.54  E-value=4.9e-16  Score=101.63  Aligned_cols=61  Identities=18%  Similarity=0.402  Sum_probs=52.3

Q ss_pred             cCccCchhhhcCCCCCCCHHhHHHHHhhcCCCCccccccccccCCCCCCCCCCHHHHhhccCCCCCCCC
Q 043293           43 ADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPAT  111 (147)
Q Consensus        43 ~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv~~~  111 (147)
                      ..|.||++|++++ ..|+++||++||+.    ..|+|+|+++.   .++.+||.++|++||++||+++|
T Consensus         5 ~~L~pC~~~v~~~-~~Ps~~CC~~lk~~----~~ClC~~~k~~---~~~~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAILSG-AKPSGECCGNLRAQ----QGCFCQYAKDP---TYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHTTC-CCCCHHHHHHHHHH----SSHHHHGGGCS---TTHHHHTCHHHHHHHHHHTSCCS
T ss_pred             hhcccCHHHHcCC-CCCCHHHHHhhCCC----CCCCCccccCc---ccccccCHHHHHHHHHHcCCCCC
Confidence            5799999999984 57999999999984    68999999873   34435999999999999999876

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=93.59  E-value=0.014  Score=38.85  Aligned_cols=70  Identities=27%  Similarity=0.601  Sum_probs=50.2

Q ss_pred             CCchhhhcCccCchhhhcCCCCCCCHHhHHHHHhhcCCC-CccccccccccCCCCCCCCCCHHHHhh-ccCCCCCCCC-C
Q 043293           36 KGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKT-RKCLCLLVKDRNEPRHGFKMNATLALS-LPSVRHAPAT-V  112 (147)
Q Consensus        36 ~~C~~~~~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~~-~~ClC~~l~~~~~~~~g~~in~~~A~~-LP~~Cgv~~~-i  112 (147)
                      ..|-    +|--|.+-+.| ...|...||.-++.+.+.+ ..|||..+|-     +|+ +|...++. |-..||-..| -
T Consensus         6 ~~CP----kLgvCanvL~g-~~~~~~~CC~Ll~GL~dleAAvCLCtaik~-----Lgi-lnlpv~L~llln~Cgk~~P~g   74 (80)
T 1hyp_A            6 PSCP----DLSICLNILGG-SLGTVDDCCALIGGLGDIEAIVCLCIQLRA-----LGI-LNLNRNLQLILNSCGRSYPSN   74 (80)
T ss_dssp             CCSC----CCGGGGGGGGT-CCTTHHHHHHHHHTSCHHHHHHHHHHHHHH-----HTC-SCHHHHHHHHHHHTTCSSCCC
T ss_pred             CCCC----chhHHHHHhCc-CCCCCCccchhhhCcchhhhhhhhhhhccc-----cce-eecChhHHHHHHHhCCcCcCC
Confidence            3565    68889988865 2236788999999987653 6799988872     565 67766665 4568999874 3


Q ss_pred             CCCC
Q 043293          113 SDCP  116 (147)
Q Consensus       113 s~C~  116 (147)
                      .+|.
T Consensus        75 F~C~   78 (80)
T 1hyp_A           75 ATCP   78 (80)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            4775

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=92.38  E-value=0.0044  Score=52.56  Aligned_cols=54  Identities=19%  Similarity=0.434  Sum_probs=36.8

Q ss_pred             HHhHHHHHhhcCCCCccccccccccCCCCC----C----CCCCHHHHhhccCCCCCCCCCCCCCC
Q 043293           61 PTCCSSITKEGSKTRKCLCLLVKDRNEPRH----G----FKMNATLALSLPSVRHAPATVSDCPA  117 (147)
Q Consensus        61 ~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~----g----~~in~~~A~~LP~~Cgv~~~is~C~~  117 (147)
                      .+||+.|+.+.+ ++.|.|..|+.......    |    ..+ ..+|..||..||+.. ...|+.
T Consensus       429 ~~cc~~l~~~~~-~~~c~c~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~p~~c~~~~-~~~c~~  490 (500)
T 3ob4_A          429 ERCCNELNEFEN-NQRCMCEALQQIMENQSDRLQGRQQEQQF-KRELRNLPQQCGLRA-PQRCDL  490 (500)
T ss_dssp             HHHHHHHGGGTT-CHHHHHHHHHHHHHHHHTTCCSSHHHHHH-HHHHHTHHHHTTCCC-CSCCCC
T ss_pred             HHHHHHHHhCCc-ccccccHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhCchhcCCCC-CccCCc
Confidence            689999998731 27999998876322110    1    012 355999999999983 357885

>1s6d_A Albumin 8; all helix, folded LEAF, right-handed superhelix, disulphide rich, plant protein; NMR {Helianthus annuus} SCOP: a.52.1.3

Probab=85.16  E-value=0.19  Score=34.61  Aligned_cols=73  Identities=18%  Similarity=0.322  Sum_probs=49.9

Q ss_pred             CCCCchhhh--cC-ccCchhhhcCC---C---------CCCCHHhHHHHHhhcCCCCccccccccccCCCCC-CCC--CC
Q 043293           34 GRKGCGDQL--AD-FSACLPFVGGK---A---------KSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRH-GFK--MN   95 (147)
Q Consensus        34 ~~~~C~~~~--~~-L~pCl~yltg~---~---------~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~-g~~--in   95 (147)
                      ....|...+  .. |.+|..|+...   .         ...-..||.-++.+   +..|.|..|+......+ |-.  -.
T Consensus         7 ~~q~C~qq~q~~q~L~~Cq~yv~qq~~~~~~~~~~~~~e~~~qqCC~qL~~~---~~~CrC~al~~~~Q~q~~g~q~~~~   83 (103)
T 1s6d_A            7 TESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQV   83 (103)
T ss_dssp             CSSSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHS---CGGGSSHHHHHHTTSTTCSSTHHHH
T ss_pred             CCcccHHHHHhChhHHHHHHHHHHHhhccCCcccccccHHHHHHHHHHHHhc---CcccCcHHHHHHHHHHhcchhHHHH
Confidence            355687765  35 89999999731   0         12357899999996   58999999976442223 211  12


Q ss_pred             HHHHhhccCCCCCC
Q 043293           96 ATLALSLPSVRHAP  109 (147)
Q Consensus        96 ~~~A~~LP~~Cgv~  109 (147)
                      ..+|..||..||+.
T Consensus        84 ~q~A~~LP~~C~i~   97 (103)
T 1s6d_A           84 MSMAHNLPIECNLM   97 (103)
T ss_dssp             HHHHHHHHHHTTSS
T ss_pred             HHHHHhcHHhcCCC
Confidence            34678899999996

>1pnb_B Napin BNIB; napin IA and IB, albumin SEED protein, SEED storage protein; NMR {Brassica napus} SCOP: a.52.1.3

Probab=82.54  E-value=0.23  Score=32.25  Aligned_cols=55  Identities=27%  Similarity=0.638  Sum_probs=36.6

Q ss_pred             CCCHHhHHHHHhhcCCCCccccccccccCC-----CCCC-CC--CCHHHHhhccCCCCCCCCCCCCC
Q 043293           58 SPSPTCCSSITKEGSKTRKCLCLLVKDRNE-----PRHG-FK--MNATLALSLPSVRHAPATVSDCP  116 (147)
Q Consensus        58 ~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~-----~~~g-~~--in~~~A~~LP~~Cgv~~~is~C~  116 (147)
                      ..-..||+.|+.+   ++.|.|..|+....     ..++ -.  -...+|..||..||+.. +..|+
T Consensus         9 ~~~qqCC~qL~~~---~~~CrC~aL~~~~~~~~~qgq~~~~q~~~~~q~a~~LP~~Cnl~~-~~~C~   71 (75)
T 1pnb_B            9 WLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ-IGTCP   71 (75)
T ss_dssp             SCTHHHHHHHHTS---CGGGSHHHHHHHHHHHHSGGGCSSCCHHHHHHHCCSCSCSSCCTT-TCCCC
T ss_pred             HHHHHHHHHHHhC---CcccccHHHHHHHHHHHHHcccchHHHHHHHHHHHhhHHhcCCCC-CCCCC
Confidence            4557899999986   58999998876421     1121 11  12456788999999963 35665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	2e-09
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	3e-08

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 49.1 bits (117), Expect = 2e-09
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 38  CGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKT-----RKCLCLLVKDRNEPRHGF 92
           CG   +  + C+ +  G+   PS  CCS +    +       R+  C  +K+        
Sbjct: 4   CGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAG--VS 61

Query: 93  KMNATLALSLPS 104
            +NA  A S+PS
Sbjct: 62  GLNAGNAASIPS 73

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 46.4 bits (110), Expect = 3e-08
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 38  CGDQLADFSACLPFVGGKAKSPSPTCCSSITK-----EGSKTRKCLCLLVKDRNEPRHGF 92
           CG   +    CL +V G    PS  CC+ +       + S  R+ +C  +K     R   
Sbjct: 3   CGQVDSKMKPCLTYVQGGP-GPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIA--RGIH 59

Query: 93  KMNATLALSLPSV--RHAPATVS---DC 115
            +N   A S+PS    + P T+S   DC
Sbjct: 60  NLNLNNAASIPSKCNVNVPYTISPDIDC 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.7
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.66
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	99.31
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	99.3
g1pnb.1	106	Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}	93.47
d1s6da_	103	Methionine-rich 2S protein (albumin 8) {Common sun	90.46
d1psya_	125	2S albumin RicC3 {Castor bean (Ricinus communis) [	84.39
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	83.71

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.70  E-value=3.4e-19  Score=121.99  Aligned_cols=82  Identities=27%  Similarity=0.547  Sum_probs=67.1

Q ss_pred             CCCchhhhcCccCchhhhcCCCCCCCHHhHHHHHhhcCC-----CCccccccccccCCCCCCCCCCHHHHhhccCCCCCC
Q 043293           35 RKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSK-----TRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAP  109 (147)
Q Consensus        35 ~~~C~~~~~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~-----~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv~  109 (147)
                      +.+|++++..|.||++|++|++..|++.||++++++++.     ++.|+|+.+++.+...  ..||.+|+.+||++||++
T Consensus         1 Ai~C~~v~~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~--~~in~~ra~~LP~~C~v~   78 (93)
T d1fk5a_           1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV--SGLNAGNAASIPSKCGVS   78 (93)
T ss_dssp             CCCHHHHHHHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTC--TTCCHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhccccc--CCcCHHHHHhhhHhcCCC
Confidence            468999999999999999998888999999999999753     3557777788754332  349999999999999996


Q ss_pred             C--CCC---CCCCC
Q 043293          110 A--TVS---DCPAL  118 (147)
Q Consensus       110 ~--~is---~C~~~  118 (147)
                      .  +|+   ||+++
T Consensus        79 l~~pis~~~dCs~i   92 (93)
T d1fk5a_          79 IPYTISTSTDCSRV   92 (93)
T ss_dssp             CSSCCSTTCCGGGC
T ss_pred             CCCCCCCCCCCCcC
Confidence            4  554   99875

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.66  E-value=1.9e-18  Score=117.82  Aligned_cols=80  Identities=29%  Similarity=0.584  Sum_probs=65.3

Q ss_pred             CCchhhhcCccCchhhhcCCCCCCCHHhHHHHHhhcCC-----CCccccccccccCCCCCCCCCCHHHHhhccCCCCCCC
Q 043293           36 KGCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSK-----TRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPA  110 (147)
Q Consensus        36 ~~C~~~~~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~-----~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv~~  110 (147)
                      .+|++++..|.||++|++|+ ..|++.||++++++++.     ++.|+|+.+++.+....  .||.+||.+||++||++.
T Consensus         1 i~C~~v~~~l~pCl~Yl~g~-~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~--~in~~ra~~LP~~C~v~~   77 (91)
T d1mida_           1 LNCGQVDSKMKPCLTYVQGG-PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH--NLNLNNAASIPSKCNVNV   77 (91)
T ss_dssp             CCHHHHHHHHGGGHHHHTTC-SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCT--TCCHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHhhHHHHcCC-CCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCC--CcCHHHHHhchHhcCCCC
Confidence            37999999999999999984 57999999999999753     34688887987543322  499999999999999964


Q ss_pred             --CCC---CCCCC
Q 043293          111 --TVS---DCPAL  118 (147)
Q Consensus       111 --~is---~C~~~  118 (147)
                        +|+   ||+++
T Consensus        78 p~pis~~~dC~~i   90 (91)
T d1mida_          78 PYTISPDIDCSRI   90 (91)
T ss_dssp             CSCCCTTCCGGGC
T ss_pred             CCCCCCCCCCCCC
Confidence              565   99874

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.31  E-value=1e-13  Score=89.14  Aligned_cols=65  Identities=29%  Similarity=0.622  Sum_probs=56.9

Q ss_pred             CchhhhcCccCchhhhcCCCCCCCHHhHHHHHhhcCCCCccccccccccCCCCCCCCCCHHHHhhccCCCCCCCC
Q 043293           37 GCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPAT  111 (147)
Q Consensus        37 ~C~~~~~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv~~~  111 (147)
                      .|+.  .+|.||++.+++ +..||.+||+.+|+    |..|||+|+++   +.++.+||..+|.++-+.||+++|
T Consensus         2 ~C~p--~~L~~C~~ai~~-g~~PS~~CC~kLke----Q~~ClC~Y~k~---P~~~~yv~spnarkv~~aCgvp~P   66 (69)
T d1l6ha_           2 GCNA--GQLTVCTGAIAG-GARPTAACCSSLRA----QQGCFCQFAKD---PRYGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             CSTT--TTHHHHHHHHTT-CCSTTHHHHHHHHH----HHHHHHHHTTC---SSHHHHTTTTTGGGCCCCCSSCSC
T ss_pred             CCCh--hhccccHHHHhC-CCCCcHHHHHHHHh----cCCccceeccC---ccHHHHcCCHHHHHHHHhcCCCCC
Confidence            4766  479999999998 56799999999998    46899999998   667667999999999999999986

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=99.30  E-value=1.2e-13  Score=88.46  Aligned_cols=64  Identities=20%  Similarity=0.480  Sum_probs=56.2

Q ss_pred             chhhhcCccCchhhhcCCCCCCCHHhHHHHHhhcCCCCccccccccccCCCCCCCCCCHHHHhhccCCCCCCCC
Q 043293           38 CGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPAT  111 (147)
Q Consensus        38 C~~~~~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv~~~  111 (147)
                      |+.  .+|.||++.+++ +..||.+||+.+|+    |..|||+|+++   +.+..+||..+|.++-+.||+++|
T Consensus         2 C~p--~~L~~C~~Ai~~-g~~PS~~CC~kLke----Q~~ClC~Y~kd---P~~~~yv~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           2 CQA--SQLAVCASAILS-GAKPSGECCGNLRA----QQGCFCQYAKD---PTYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             CCG--GGGGGGHHHHHH-CCCCCHHHHHHHHH----HGGGHHHHTTC---TTTHHHHTSHHHHHHHHHTTCCCC
T ss_pred             CCh--hhccccHHHHhc-CCCCcHHHHHHHHh----cCCccceecCC---ccHHHHcCCHHHHHHHHhcCCCCC
Confidence            555  479999999997 56899999999998    46899999998   667667999999999999999986

>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: Methionine-rich 2S protein (albumin 8)
species: Common sunflower (Helianthus annuus) [TaxId: 4232]

Probab=90.46  E-value=0.028  Score=37.42  Aligned_cols=73  Identities=16%  Similarity=0.304  Sum_probs=49.3

Q ss_pred             CCCCchhhh---cCccCchhhhcCC-----CC-------CCCHHhHHHHHhhcCCCCccccccccccCCCCCCC---CCC
Q 043293           34 GRKGCGDQL---ADFSACLPFVGGK-----AK-------SPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGF---KMN   95 (147)
Q Consensus        34 ~~~~C~~~~---~~L~pCl~yltg~-----~~-------~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g~---~in   95 (147)
                      ....|..-+   ..|..|..||...     ..       .-=..||+.|+.+   ++.|.|..|+.......+.   .-=
T Consensus         7 ~~q~C~~q~q~qq~L~~Cq~Yl~q~~~~~~~~~~~~~~e~~~~~CC~qL~q~---~~~CrC~~L~~avq~q~~q~~~~~~   83 (103)
T d1s6da_           7 TESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQV   83 (103)
T ss_dssp             CSSSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHS---CGGGSSHHHHHHTTSTTCSSTHHHH
T ss_pred             ccccCHHHHHHhHhHHHHHHHHHHHHhccCCCCCccCchHHHHHHHHHHHcC---CCCCcCHHHHHHHHHHHhHHHHHHH
Confidence            456788544   3699999999621     11       1226799999996   6899999887654333321   111


Q ss_pred             HHHHhhccCCCCCC
Q 043293           96 ATLALSLPSVRHAP  109 (147)
Q Consensus        96 ~~~A~~LP~~Cgv~  109 (147)
                      ...|..||..||+.
T Consensus        84 ~q~Ak~LPs~C~i~   97 (103)
T d1s6da_          84 MSMAHNLPIECNLM   97 (103)
T ss_dssp             HHHHHHHHHHTTSS
T ss_pred             HHHHHhChHhcCCC
Confidence            35688999999996

>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: 2S albumin RicC3
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=84.39  E-value=0.037  Score=37.91  Aligned_cols=74  Identities=20%  Similarity=0.407  Sum_probs=48.5

Q ss_pred             CCCCchhhh--cCccCchhhhcCC-----CCCC-----C-----------HHhHHHHHhhcCCCCccccccccccCCC--
Q 043293           34 GRKGCGDQL--ADFSACLPFVGGK-----AKSP-----S-----------PTCCSSITKEGSKTRKCLCLLVKDRNEP--   88 (147)
Q Consensus        34 ~~~~C~~~~--~~L~pCl~yltg~-----~~~P-----s-----------~~CC~~l~~l~~~~~~ClC~~l~~~~~~--   88 (147)
                      ....|...+  ..|..|..||.-.     +..+     .           ..||+.|+.+   .+.|.|..|+..+..  
T Consensus        14 ~~q~Crqe~q~q~L~sCq~Yl~qq~~~~~~~~~~~~~~~~~~~~~e~~~l~qCC~qL~q~---~~~CrC~~l~~~v~~~~   90 (125)
T d1psya_          14 SSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQI   90 (125)
T ss_dssp             SSSSHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTC---CSSHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHhhhHHHHHHHHHHHHhccCCCCcccccccccccccccHHHHHHHHHHHhC---CcCCcCHHHHHHHHHHH
Confidence            456787653  3799999999732     1011     0           3699999986   689999988753221  


Q ss_pred             ----CCCCCCC--HHHHhhccCCCCCCC
Q 043293           89 ----RHGFKMN--ATLALSLPSVRHAPA  110 (147)
Q Consensus        89 ----~~g~~in--~~~A~~LP~~Cgv~~  110 (147)
                          ..+..+.  ..+|..||..||+..
T Consensus        91 qq~~~~~~~~~~~~q~Ak~LPs~C~i~~  118 (125)
T d1psya_          91 QQGQLHGEESERVAQRAGEIVSSCGVRC  118 (125)
T ss_dssp             HHTTCCTTCSHHHHHHHHHHHHHHTCST
T ss_pred             HHHHHHHHHHHHHHHHHHhChhhcCCcc
Confidence                1121111  467889999999964

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=83.71  E-value=0.12  Score=32.34  Aligned_cols=67  Identities=27%  Similarity=0.571  Sum_probs=44.2

Q ss_pred             CccCchhhhcCCCCCCCHHhHHHHHhhcCCC-CccccccccccCCCCCCCCCCHHHHhh-ccCCCCCCCC-CCCCCC
Q 043293           44 DFSACLPFVGGKAKSPSPTCCSSITKEGSKT-RKCLCLLVKDRNEPRHGFKMNATLALS-LPSVRHAPAT-VSDCPA  117 (147)
Q Consensus        44 ~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~~-~~ClC~~l~~~~~~~~g~~in~~~A~~-LP~~Cgv~~~-is~C~~  117 (147)
                      +|.-|.+-+.+. ..+...||.-++.+.+.+ ..|+|-.||..     ++ +|...++. |-..||-..| -.+|+.
T Consensus         5 Klg~C~nvLg~~-~~~~~~CC~Ll~GL~dleAAvCLCtaika~-----~l-lnvpv~l~llln~Cgk~~P~gF~CP~   74 (75)
T d1hypa_           5 DLSICLNILGGS-LGTVDDCCALIGGLGDIEAIVCLCIQLRAL-----GI-LNLNRNLQLILNSCGRSYPSNATCPR   74 (75)
T ss_dssp             CCGGGGGGGGTC-CTTHHHHHHHHHTSCHHHHHHHHHHHHHHH-----TC-SCHHHHHHHHHHHTTCSSCCCCCCSC
T ss_pred             chhhHHHHhcCc-cCCCCCcchHHhhHHHHHHHHHHHHHHHHh-----hh-ccccchHHHHHHHcCCcCcCCCcCCC
Confidence            466677777653 345688999999987654 67999888852     22 44444443 4557998764 347764