Citrus Sinensis ID: 043295

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
Protein Sequence
MIVANEESHRSCYVFANGAGTSGFTAYVGFYEISQKGEKVFVSGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE
Secondary Structure (PSIPRED)
cccccccccccHHHHHccccccHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHccccEEEcccccccHHHHHHHHcccccEEEEcccccHHHHHHHHHHccccEEEEEccccccccccccccccHHHHHHHHHEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEHHHHcccHHHHHHHccccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHcccccHHEEEEHEEccccccEEEEEccHHHHHHHHHHEcccEEEEEcccHHHHHHHHHHccccHHHcccccccHHHHHHHHcccccEEEEEcccHHHHHHHHHHHcccccEEEEHHEEccccccccccccHHHHHHHHHHEcEEEEccHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHcHHHHHHHHccccccEEEEEEccc
Coil and Loop (DISEMBL)
mivaneeshrscyvfangagtsgfTAYVGFYEISQKGEKVFVSGAYGHLVGQYAKLGGcyvvgsagtnEKVAILKEKlgfddafnykeeTDLKATLkryfpdgidvyfDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIqgflstdhfdlhqDFISMTCDAlragkiqpledisngvdsipsaftgffrgdniGKKFVRIAGE
Flexible Loop (DISEMBL)
mivaneeshrSCYVFANGAGTSGFTAYVGFYEISQKGEKVFVSGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAftgffrgdniGKKFVRIAGE
Low Complexity Region (SEG)
MIVANEESHRSCYVFANGAGTSGFTAYVGFYEISQKGEKVFVSGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE
Disordered region (IsUnstruct)
**********SCYVFANGAGTSGFTAYVGFYEISQKGEKVFVSGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI***
Disordered Region (DISOPRED)
*I*****SHRSCYVFANGAGTSGFTAYVGFYEISQKGEKVFVSGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG*
Disordered Region (DISEMBL)
********HRSCYVFANGAGTSGFTAYVGFYEISQKGEKVFVSGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE
Disordered Region (DISPRO)
****NEESHRSCYVFANGAGTSGFTAYVGFYEISQKGEKVFVSGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIVANEESHRSCYVFANGAGTSGFTAYVGFYEISQKGEKVFVSGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	223	2.2.26 [Sep-21-2011]
Q39172	345	NADP-dependent alkenal do	no	no	0.914	0.591	0.531	6e-60
Q39173	343	NADP-dependent alkenal do	no	no	0.914	0.594	0.535	2e-59
Q6WAU0	342	(+)-pulegone reductase OS	N/A	no	0.914	0.596	0.502	1e-57
Q91YR9	329	Prostaglandin reductase 1	yes	no	0.883	0.598	0.416	5e-37
P97584	329	Prostaglandin reductase 1	yes	no	0.869	0.589	0.424	6e-37
O34812	339	Putative NADP-dependent o	yes	no	0.892	0.587	0.399	1e-36
Q3SZJ4	329	Prostaglandin reductase 1	yes	no	0.892	0.604	0.429	1e-35
Q29073	329	Prostaglandin reductase 1	yes	no	0.892	0.604	0.434	2e-35
Q9EQZ5	329	Prostaglandin reductase 1	yes	no	0.887	0.601	0.422	3e-35
Q14914	329	Prostaglandin reductase 1	yes	no	0.892	0.604	0.429	8e-35

>sp|Q39172|P1_ARATH NADP-dependent alkenal double bond reductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1

 Score =  230 bits (586), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 111/209 (53%), Positives = 150/209 (71%), Gaps = 5/209 (2%)

Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY GFYE+   ++GE V+VS   GA G LVGQ AK+ GCYVVGSAG+ EKV +L
Sbjct: 137 GMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLL 196

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K K GFDDAFNYKEE+DL A LKR FP+GID+YF+NVGG+ML+A + NMN+ GR+A CG+
Sbjct: 197 KTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGM 256

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           IS+    ++  V N+ +I+YKRI+IQGF+ +D +D +  F+      +R GKI  +ED++
Sbjct: 257 ISQYNLENQEGVHNLSNIIYKRIRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVA 316

Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
           +G++  P A  G F G N+GK+ V +A E
Sbjct: 317 DGLEKAPEALVGLFHGKNVGKQVVVVARE 345

Catalyzes the reduction of the 7-8 double bond of phenylpropanal substrates, such as p-coumaryl aldehyde and coniferyl aldehyde (in vitro). Has activity towards toxic substrates, such as 4-hydroxy-(2E)-nonenal (in vitro). May play a distinct role in plant antioxidant defense and is possibly involved in NAD(P)/NAD(P)H homeostasis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 7EC: 4

>sp|Q39173|P2_ARATH NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2

 Score =  229 bits (583), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/209 (53%), Positives = 149/209 (71%), Gaps = 5/209 (2%)

Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY GFYE+   +KGE V+VS   GA G LVGQ+AK+ GCYVVGSAG+ EKV +L
Sbjct: 135 GMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLL 194

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K K GFDDAFNYKEE+DL A LKR FP GID+YF+NVGG+ML+A + NMN  GR+A CG+
Sbjct: 195 KTKFGFDDAFNYKEESDLSAALKRCFPKGIDMYFENVGGKMLDAVLLNMNPHGRIAVCGM 254

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           IS+    ++  V N+ +I+YKRI+IQGF+  D +D +  F+ +    ++ GKI  +ED++
Sbjct: 255 ISQYNLENQEGVHNLSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITYVEDVA 314

Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
           +G++  P A  G F G N+GK+ V IA E
Sbjct: 315 DGLEKAPEALVGLFHGKNVGKQVVVIARE 343

Catalyzes the reduction of the 7-8 double bond of phenylpropanal substrates, such as p-coumaryl aldehyde and coniferyl aldehyde (in vitro). Has activity towards toxic substrates, such as 4-hydroxy-(2E)-nonenal (in vitro) (By similarity). May play a distinct role in plant antioxidant defense and is possibly involved in NAD(P)/NAD(P)h homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q6WAU0|PULR_MENPI (+)-pulegone reductase OS=Mentha piperita PE=1 SV=1

 Score =  223 bits (567), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/209 (50%), Positives = 148/209 (70%), Gaps = 5/209 (2%)

Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY GF+EI   +KGE VFV+   G+ G LVGQ+AK+ GCYVVGSAG+ EKV +L
Sbjct: 134 GMPGMTAYAGFFEICSPKKGETVFVTAAAGSVGQLVGQFAKMFGCYVVGSAGSKEKVDLL 193

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K K GFDDAFNYKEE+D    LKR+FP+GID+YFDNVGG+MLEA + NM + GR+A CG+
Sbjct: 194 KNKFGFDDAFNYKEESDYDTALKRHFPEGIDIYFDNVGGKMLEAVINNMRVHGRIAVCGM 253

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           +S+ +      V N++ ++ K+I++QGF+  D++ L+  F+ M    ++ GK+  +EDIS
Sbjct: 254 VSQYSLKQPEGVHNLLKLIPKQIRMQGFVVVDYYHLYPKFLEMVLPRIKEGKVTYVEDIS 313

Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
            G++S PSA  G + G N+G + V ++ E
Sbjct: 314 EGLESAPSALLGVYVGRNVGNQVVAVSRE 342

Monoterpene synthase that catalyzes the specific reduction of the 4,8-double bond of (+)-pulegone to produce both (-)-menthone and (+)-isomenthone in a 70:30 ratio. Unable to utilize either (-)-isopiperitenone or (+)-cis-isopulegone, or to catalyze the reverse reaction with (-)-menthone or (+)-isomenthone. Has an absolute requirement for NADPH.

Mentha piperita (taxid: 34256)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q91YR9|PTGR1_MOUSE Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2

 Score =  154 bits (389), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 126/209 (60%), Gaps = 12/209 (5%)

Query: 20  GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY G  +I   + GE V VS   GA G +VGQ AKL GC VVG+AG++EKVA L
Sbjct: 123 GMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYL 182

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K KLGFD AFNYK    L+  L+   PDG D YFDNVGGE   A +  M  FGR+A CG 
Sbjct: 183 K-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNAVILQMKTFGRIAICGA 241

Query: 135 ISE---CADASKRAVPNMIDIVYKRIKIQGFL-STDHFDLHQDFISMTCDALRAGKIQPL 190
           IS+        +   P +  ++Y++++++GF+ +    ++ Q  ++   + +  GK+Q  
Sbjct: 242 ISQYNRTGPCPQGPAPEV--VIYQQLRMEGFIVNRWQGEVRQKALTELMNWVSEGKVQCH 299

Query: 191 EDISNGVDSIPSAFTGFFRGDNIGKKFVR 219
           E ++ G + +P+AF G  +G+N+GK  V+
Sbjct: 300 EYVTEGFEKMPAAFMGMLKGENLGKTIVK 328

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|P97584|PTGR1_RAT Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3

 Score =  154 bits (388), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 90/212 (42%), Positives = 124/212 (58%), Gaps = 18/212 (8%)

Query: 20  GTSGFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY G  +I   + GE V V   +GA G +VGQ AKL GC VVG+AG++EKVA L
Sbjct: 123 GMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYL 182

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K KLGFD AFNYK    L+  L+   PDG D YFDNVGGE     +  M  FGR+A CG 
Sbjct: 183 K-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNTVILQMKTFGRIAICGA 241

Query: 135 ISE------CADASKRAVPNMIDIVYKRIKIQGFLSTD-HFDLHQDFISMTCDALRAGKI 187
           IS+      C       V     I+Y++++++GF+ T    ++ Q  ++   + +  GKI
Sbjct: 242 ISQYNRTGPCPPGPSPEV-----IIYQQLRMEGFIVTRWQGEVRQKALTDLMNWVSEGKI 296

Query: 188 QPLEDISNGVDSIPSAFTGFFRGDNIGKKFVR 219
           +  E I+ G + +P+AF G  +GDN+GK  V+
Sbjct: 297 RYHEYITEGFEKMPAAFMGMLKGDNLGKTIVK 328

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|O34812|YFMJ_BACSU Putative NADP-dependent oxidoreductase YfmJ OS=Bacillus subtilis (strain 168) GN=yfmJ PE=2 SV=1

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 126/213 (59%), Gaps = 14/213 (6%)

Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVSGAYGHL---VGQYAKLGGCYVVGSAGTNEKVAIL 74
           G +G TAY G  +I   ++GE V VSGA G +   VGQ AK+ G  VVG AG++EK+  L
Sbjct: 127 GMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYL 186

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K++L FD+A NYK   D++  L+   PDG+DVYFDNVGG + +A +  +N F R+  CG 
Sbjct: 187 KQELQFDEAINYKTADDIQKALQNACPDGVDVYFDNVGGPISDAVMNLLNEFARIPVCGA 246

Query: 135 I------SECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQ 188
           I      SE  D   R    +I     +  +QGF+ +D+ D   +      + L+AGK+ 
Sbjct: 247 ISSYNAESEADDMGPRVQSKLIKT---KSLMQGFIVSDYSDRFSEGAKQLAEWLKAGKLH 303

Query: 189 PLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA 221
             E I+ G ++IP AF G F+G+N GK+ ++++
Sbjct: 304 YEETITEGFENIPDAFLGLFKGENKGKQLIKVS 336

Putative quinone oxidoreductase that may contribute to the degradation of aromatic compounds.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q3SZJ4|PTGR1_BOVIN Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1

 Score =  149 bits (376), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 120/207 (57%), Gaps = 8/207 (3%)

Query: 20  GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY G  +I   + GE V VS   GA G +VGQ AKL GC VVG+AG++EKVA L
Sbjct: 123 GMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWL 182

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K K GFD A NYK    L+  LK   P+G D YFDNVGGE    A+  M  FGR+A CG 
Sbjct: 183 K-KHGFDVALNYKTVKSLEEALKEAAPEGYDCYFDNVGGEFSNVAITQMKKFGRIAICGA 241

Query: 135 ISECADASKRAV-PNMIDIVYKRIKIQGFLSTD-HFDLHQDFISMTCDALRAGKIQPLED 192
           IS     S  +  P+   I++K + +QGF+      ++ Q  +      +  GKIQ  E 
Sbjct: 242 ISVYNRTSPLSPGPSPEIIIFKELHLQGFVVYRWQGEVRQKALRDLLKWVSEGKIQYHEH 301

Query: 193 ISNGVDSIPSAFTGFFRGDNIGKKFVR 219
           ++ G +++P+AF G  +G+N+GK  V+
Sbjct: 302 VTEGFENMPAAFIGLLKGENLGKAIVK 328

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q29073|PTGR1_PIG Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/207 (43%), Positives = 119/207 (57%), Gaps = 8/207 (3%)

Query: 20  GTSGFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY G  +I   + GE V V   +GA G +VGQ AKL GC VVG+AG++EKVA L
Sbjct: 123 GMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACL 182

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K K GFD AFNYK    L+ TLK+  P+G D YFDNVGGE   A  + M  FGR+A CG 
Sbjct: 183 K-KYGFDVAFNYKTIESLEETLKKASPEGYDCYFDNVGGEFSNAVTSQMKKFGRIAICGA 241

Query: 135 ISECADASKRAVPNMIDIV-YKRIKIQGFLSTD-HFDLHQDFISMTCDALRAGKIQPLED 192
           IS              ++V Y  +  QGF+ T    ++ Q  +      +  GKIQ  E 
Sbjct: 242 ISTYNRTGPPPPGPPPEVVIYNELCFQGFIVTRWQGEVRQKALRDLLKWVSEGKIQYHEH 301

Query: 193 ISNGVDSIPSAFTGFFRGDNIGKKFVR 219
           I+ G +++P+AF G  +G+N+GK  V+
Sbjct: 302 ITEGFENMPAAFMGMLKGENLGKAIVK 328

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q9EQZ5|PTGR1_CAVPO Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1

 Score =  148 bits (373), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 121/206 (58%), Gaps = 8/206 (3%)

Query: 20  GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY G  E+   + GE V VS   GA G +VGQ AKL GC VVG+AG++EK+A L
Sbjct: 123 GMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL 182

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K+ +GFD AFNYK    L+  LK+  PDG D YFDNVGGE L   ++ M  FG++A CG 
Sbjct: 183 KQ-IGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGA 241

Query: 135 ISECADASKRAV-PNMIDIVYKRIKIQGFLSTD-HFDLHQDFISMTCDALRAGKIQPLED 192
           IS      +    P+   I+YK+++I+GF+      D+ +  +      +  GKIQ  E 
Sbjct: 242 ISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEH 301

Query: 193 ISNGVDSIPSAFTGFFRGDNIGKKFV 218
           ++ G +++P+AF     G N+GK  V
Sbjct: 302 VTKGFENMPAAFIEMLNGANLGKAVV 327

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Cavia porcellus (taxid: 10141)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

>sp|Q14914|PTGR1_HUMAN Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2

 Score =  147 bits (370), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 116/207 (56%), Gaps = 8/207 (3%)

Query: 20  GTSGFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY G  EI   + GE V V   +GA G +VGQ AKL GC VVG+ G++EKVA L
Sbjct: 123 GMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYL 182

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
            +KLGFD  FNYK    L+ TLK+  PDG D YFDNVGGE     +  M  FGR+A CG 
Sbjct: 183 -QKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGA 241

Query: 135 ISECADASKRAVPNMIDIV-YKRIKIQGFLSTD-HFDLHQDFISMTCDALRAGKIQPLED 192
           IS              +IV Y+ ++++ F+      D  Q  +      +  GKIQ  E 
Sbjct: 242 ISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEY 301

Query: 193 ISNGVDSIPSAFTGFFRGDNIGKKFVR 219
           I  G +++P+AF G  +GDN+GK  V+
Sbjct: 302 IIEGFENMPAAFMGMLKGDNLGKTIVK 328

Functions as 15-oxo-prostaglandin 13-reductase and acts on 15-oxo-PGE1, 15-oxo-PGE2 and 15-oxo-PGE2-alpha. Has no activity towards PGE1, PGE2 and PGE2-alpha (By similarity). Catalyzes the conversion of leukotriene B4 into its biologically less active metabolite, 12-oxo-leukotriene B4. This is an initial and key step of metabolic inactivation of leukotriene B4.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
255567007	346	alcohol dehydrogenase, putative [Ricinus	0.914	0.589	0.693	8e-79
224087152	347	predicted protein [Populus trichocarpa]	0.932	0.599	0.680	1e-77
225445486	346	PREDICTED: NADP-dependent alkenal double	0.914	0.589	0.703	2e-77
147810325	805	hypothetical protein VITISV_026273 [Viti	0.887	0.245	0.709	1e-75
356517014	346	PREDICTED: NADP-dependent alkenal double	0.914	0.589	0.679	2e-75
225445965	347	PREDICTED: NADP-dependent alkenal double	0.914	0.587	0.665	2e-72
359485040	347	PREDICTED: LOW QUALITY PROTEIN: NADP-dep	0.914	0.587	0.665	5e-72
449520491	345	PREDICTED: NADP-dependent alkenal double	0.901	0.582	0.647	1e-70
388508546	346	unknown [Medicago truncatula]	0.914	0.589	0.650	1e-70
51090889	342	putative allyl alcohol dehydrogenase [Or	0.905	0.590	0.628	2e-70

>gi|255567007|ref|XP_002524486.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223536274|gb|EEF37926.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  298 bits (764), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 145/209 (69%), Positives = 171/209 (81%), Gaps = 5/209 (2%)

Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G SG TAY G +E+   +KGEKVFVS   G+ G+LVGQYAKL GCYVVG AG+ EK+A+L
Sbjct: 138 GFSGLTAYAGLFEVCKPKKGEKVFVSAASGSVGNLVGQYAKLFGCYVVGCAGSKEKIAML 197

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           KEKLGFDDAFNYKEETDLKATLKRYFPDGID+YFDNVG EM EAA+ANM +FGRVA CGV
Sbjct: 198 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDIYFDNVGAEMQEAAIANMKIFGRVAVCGV 257

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           ISE  D+ ++A P MID+VY+RIKIQGFL+ D  +++ DFIS TCD LRAGK+  LEDIS
Sbjct: 258 ISEYTDSGRKAAPEMIDVVYRRIKIQGFLAADFMNVYADFISTTCDYLRAGKMHVLEDIS 317

Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
            GV+SIP++  G FRG NIGKK V++A E
Sbjct: 318 TGVESIPTSLIGLFRGHNIGKKMVQLAAE 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087152|ref|XP_002308086.1| predicted protein [Populus trichocarpa] gi|222854062|gb|EEE91609.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 145/213 (68%), Positives = 171/213 (80%), Gaps = 5/213 (2%)

Query: 16  ANGAGTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK 70
           A   G SG TAY G +EI   +KG+KVFVS   G+ G+LVGQYAKL GCYVVG AG+ +K
Sbjct: 135 AGSLGLSGLTAYAGLFEICKPKKGDKVFVSAACGSVGNLVGQYAKLSGCYVVGCAGSRDK 194

Query: 71  VAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVA 130
           VA+LKEKLGFDDAFNYKEETDL + L RYFPDGID+YFDNVG +MLEAAVANMN FGRVA
Sbjct: 195 VALLKEKLGFDDAFNYKEETDLNSALTRYFPDGIDIYFDNVGADMLEAAVANMNPFGRVA 254

Query: 131 ACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPL 190
           ACG I+E ++ +KRA PNMID++YKRIKIQGFL+ DH  LH DF+S T + ++ GKI+  
Sbjct: 255 ACGTIAEYSETAKRAAPNMIDVIYKRIKIQGFLAMDHKSLHSDFLSTTTEYIQNGKIKVQ 314

Query: 191 EDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
           EDIS GV+SIP AF G FRGDN+GKK V+IA E
Sbjct: 315 EDISIGVESIPLAFIGLFRGDNVGKKIVKIADE 347

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445486|ref|XP_002285167.1| PREDICTED: NADP-dependent alkenal double bond reductase P1 [Vitis vinifera] gi|297738946|emb|CBI28191.3| unnamed protein product [Vitis vinifera]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 147/209 (70%), Positives = 172/209 (82%), Gaps = 5/209 (2%)

Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G SG TA+ GF+++   +KGEKVFVS   G+ G+LVGQYAKL GCYVVG AG+ +KV +L
Sbjct: 138 GFSGLTAHGGFFQVCKPKKGEKVFVSAASGSVGNLVGQYAKLFGCYVVGCAGSKQKVNLL 197

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           KEKLGFDDAFNYKEETDLK+TLKRYFPDGID+YFDNVG EMLEAAVANMN+FGRVA CGV
Sbjct: 198 KEKLGFDDAFNYKEETDLKSTLKRYFPDGIDIYFDNVGAEMLEAAVANMNIFGRVAVCGV 257

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           IS+  D+ KRA P+M+DIVYKRI +QGFL+ D  + + DFIS T D L  GKIQ +EDIS
Sbjct: 258 ISQYTDSGKRAAPDMLDIVYKRITMQGFLAADLMNGYTDFISTTQDYLNDGKIQVIEDIS 317

Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
            GV+SIPSAF G FRGDN+GKK V+IA E
Sbjct: 318 QGVESIPSAFVGLFRGDNVGKKIVKIADE 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 144/203 (70%), Positives = 166/203 (81%), Gaps = 5/203 (2%)

Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G SG TA+ GF+++   +KGEKVFVS   G+ G+LVGQYAKL GCYVVG AG  +KV +L
Sbjct: 140 GFSGLTAHGGFFQVCKPKKGEKVFVSAASGSVGNLVGQYAKLFGCYVVGCAGNKQKVNLL 199

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           KEKLGFDDAFNYKEETDLK+TLKRYFPDGID+YFDNVG EMLEAAVANMN+FGRVA CGV
Sbjct: 200 KEKLGFDDAFNYKEETDLKSTLKRYFPDGIDIYFDNVGAEMLEAAVANMNIFGRVAVCGV 259

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           IS+  D+ KRA P+M+DIVYKRI IQGFL+ D  + + DFIS T D L  GKIQ +EDIS
Sbjct: 260 ISQYTDSGKRAAPDMLDIVYKRITIQGFLAADLMNGYTDFISTTQDYLNDGKIQVIEDIS 319

Query: 195 NGVDSIPSAFTGFFRGDNIGKKF 217
            GV+SIPSAF G FRGDN+GKK 
Sbjct: 320 QGVESIPSAFVGLFRGDNVGKKI 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517014|ref|XP_003527185.1| PREDICTED: NADP-dependent alkenal double bond reductase P1-like [Glycine max]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 142/209 (67%), Positives = 169/209 (80%), Gaps = 5/209 (2%)

Query: 20  GTSGFTAYVGFYEISQ--KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G +G +AY GF+E+ +  KGEKVFVS   GA G+LVGQYAKL GCYVVG AG+ +KVA+L
Sbjct: 138 GFNGLSAYAGFFELCKPLKGEKVFVSTASGAVGNLVGQYAKLLGCYVVGCAGSQKKVALL 197

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           KEKLGFDDAFNYKEETDL +TLKRYFPDGIDVYFDNVGGEMLEAAVANM  FGRVA CGV
Sbjct: 198 KEKLGFDDAFNYKEETDLNSTLKRYFPDGIDVYFDNVGGEMLEAAVANMKAFGRVAICGV 257

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           ISE   A KRA PNM+D+VYKRI I+GFL+ D  ++ +DF + T D +R GK++ +ED+S
Sbjct: 258 ISEYTSAGKRASPNMLDVVYKRINIRGFLAADFLNVFEDFSTKTSDYIRTGKLKVIEDLS 317

Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
            GV+SIPSAF G F+GDNIGKK + +  E
Sbjct: 318 LGVESIPSAFVGLFKGDNIGKKIISLTEE 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445965|ref|XP_002265626.1| PREDICTED: NADP-dependent alkenal double bond reductase P2 [Vitis vinifera] gi|297735440|emb|CBI17880.3| unnamed protein product [Vitis vinifera]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 163/209 (77%), Gaps = 5/209 (2%)

Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G SG TAY GF+E+   +KGEKVFVS   G+ G+LVGQYAKL GC+VVG AGT +KV +L
Sbjct: 139 GLSGLTAYGGFFEVCKPKKGEKVFVSAACGSVGNLVGQYAKLFGCHVVGCAGTKQKVELL 198

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K KLGFDDAFNYKEE DLK+TLKRYFPDGID+YFDNVGG+MLEA+VANMN FGR+A CG+
Sbjct: 199 KGKLGFDDAFNYKEEADLKSTLKRYFPDGIDIYFDNVGGKMLEASVANMNPFGRIAVCGI 258

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           ISE     +R  P+MIDIVYKR+K+QGFL  D+     DFIS   + L   KI  LEDIS
Sbjct: 259 ISEYTGIGERVAPDMIDIVYKRLKVQGFLVIDYLKGMDDFISTMSNHLSTDKIHVLEDIS 318

Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
            GV+SIPSAF G FRGDN+GKK V++A E
Sbjct: 319 QGVESIPSAFVGLFRGDNVGKKVVKVADE 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485040|ref|XP_003633205.1| PREDICTED: LOW QUALITY PROTEIN: NADP-dependent alkenal double bond reductase P2-like [Vitis vinifera]

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 163/209 (77%), Gaps = 5/209 (2%)

Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G SG TAY GF E+   +KGEKVFVS   G+ G+LVGQYAKL GC+VVG AGT +KV +L
Sbjct: 139 GLSGLTAYAGFVEVCKPKKGEKVFVSAACGSVGNLVGQYAKLFGCHVVGCAGTKQKVELL 198

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K KLGFDDAFNYKEETDLK+TLKRYFPDG+D+YFDNVGG+MLEA+VANMN FGR+A CG+
Sbjct: 199 KGKLGFDDAFNYKEETDLKSTLKRYFPDGMDIYFDNVGGKMLEASVANMNPFGRIAVCGI 258

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           ISE     +RA P+MIDIVYKR+KIQGFL  D+     DFIS   + L  GKI  LEDIS
Sbjct: 259 ISEYTGIGERAAPDMIDIVYKRLKIQGFLVIDYLKGMDDFISTMSNHLSTGKIHVLEDIS 318

Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
            GV+SI SAF G F+GDN+GK  V++A E
Sbjct: 319 QGVESISSAFVGLFQGDNVGKXVVKVADE 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520491|ref|XP_004167267.1| PREDICTED: NADP-dependent alkenal double bond reductase P1-like [Cucumis sativus]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 134/207 (64%), Positives = 166/207 (80%), Gaps = 6/207 (2%)

Query: 20  GTSGFTAYVGFYEISQ--KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G SG +AY G +E+++  +GE+VFVS   G+ G LVGQ AKL GCYVVG AG+++KV +L
Sbjct: 139 GFSGLSAYAGLFEVAKIKEGERVFVSAASGSVGSLVGQLAKLHGCYVVGCAGSDQKVTLL 198

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           KEKLGFDDAFNYK+E DL  TL++YFPDGIDVYFDNVGGEMLEAA+ANM  FGRVA CGV
Sbjct: 199 KEKLGFDDAFNYKQEKDLTTTLEKYFPDGIDVYFDNVGGEMLEAAIANMKPFGRVAVCGV 258

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           ISE  + SK+AVPNM+D+VYKRI +QGFL+ D  D+  +F+S     L +G+I+PLEDIS
Sbjct: 259 ISEYTN-SKKAVPNMVDLVYKRINVQGFLAGDFLDVFPNFVSKVSQYLHSGEIEPLEDIS 317

Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIA 221
            GV++IPSAF G F+GDNIGKK V+ A
Sbjct: 318 VGVENIPSAFIGLFKGDNIGKKIVKFA 344

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508546|gb|AFK42339.1| unknown [Medicago truncatula]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 136/209 (65%), Positives = 165/209 (78%), Gaps = 5/209 (2%)

Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G SG +AY GF+EI   +KGE VFVS   G+ G++VGQYAKL GCYVVG AG+ +KV +L
Sbjct: 138 GFSGLSAYGGFFEICKPRKGETVFVSAASGSVGNIVGQYAKLLGCYVVGCAGSQKKVTLL 197

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           KE+LGFDDAFNYKEETDL +T KRYFPDGID+YFDNVGGEMLEAAVANM  FGRV+ CGV
Sbjct: 198 KEELGFDDAFNYKEETDLNSTFKRYFPDGIDIYFDNVGGEMLEAAVANMKAFGRVSVCGV 257

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           ISE  D  KRA P+M+D+VYKRI I+GFL+ D+ ++  DF + T D LR G+++ +ED S
Sbjct: 258 ISEYTDIGKRASPHMMDVVYKRITIRGFLAADYMNVFGDFSAKTLDYLRNGQLRVIEDRS 317

Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
            GV+SIPSAF G F GDN+GKK V +A E
Sbjct: 318 LGVESIPSAFVGLFNGDNVGKKVVVLADE 346

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51090889|dbj|BAD35462.1| putative allyl alcohol dehydrogenase [Oryza sativa Japonica Group] gi|125555974|gb|EAZ01580.1| hypothetical protein OsI_23614 [Oryza sativa Indica Group] gi|215769175|dbj|BAH01404.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 130/207 (62%), Positives = 160/207 (77%), Gaps = 5/207 (2%)

Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           GTSG TAY G YE+   + GEKVFVS   G+ G LVGQ+AKL GCYVVG AGTN KV +L
Sbjct: 136 GTSGMTAYAGLYEVGRPEAGEKVFVSAASGSVGSLVGQFAKLAGCYVVGCAGTNAKVDLL 195

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K KLGFDDAFNYK+E D+K+ LKRYFPDGID+YFDNVGGE LEAA+ANMN +GRVA CGV
Sbjct: 196 KNKLGFDDAFNYKDEPDMKSALKRYFPDGIDIYFDNVGGETLEAALANMNTYGRVALCGV 255

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           ISE  DA  RAVP++++++YKRI I+GF + D      +F  +  D +R GK+Q +EDIS
Sbjct: 256 ISEYTDAGHRAVPDLLEVIYKRITIRGFFAWDFLTRFAEFTGVISDWIRQGKVQVIEDIS 315

Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIA 221
           +G++S+PSAF   F GDNIGKK V++A
Sbjct: 316 DGLESVPSAFAALFSGDNIGKKMVKLA 342

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	223
TAIR|locus:2097795	350	AT3G03080 [Arabidopsis thalian	0.914	0.582	0.545	8.4e-58
TAIR|locus:2148131	345	AER "alkenal reductase" [Arabi	0.914	0.591	0.531	1.6e-56
TAIR|locus:2148166	343	AT5G16990 [Arabidopsis thalian	0.914	0.594	0.535	2.5e-56
TAIR|locus:2153759	353	AT5G37980 [Arabidopsis thalian	0.914	0.577	0.545	3.3e-56
TAIR|locus:2028736	351	AT1G26320 [Arabidopsis thalian	0.914	0.581	0.555	6.8e-56
TAIR|locus:2034109	350	AT1G65560 [Arabidopsis thalian	0.914	0.582	0.533	1.1e-55
TAIR|locus:2154041	353	AT5G38000 [Arabidopsis thalian	0.905	0.572	0.541	1.4e-55
TAIR|locus:2153799	353	AT5G37940 [Arabidopsis thalian	0.914	0.577	0.535	7.8e-55
TAIR|locus:2148186	345	AT5G17000 [Arabidopsis thalian	0.914	0.591	0.526	1.6e-54
UNIPROTKB|Q6WAU0	342	Q6WAU0 "(+)-pulegone reductase	0.914	0.596	0.502	2.6e-54

TAIR|locus:2097795 AT3G03080 [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 114/209 (54%), Positives = 149/209 (71%)

Query:    20 GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
             G  G TAY GFYEI   +KGE VFVS   GA G LVGQ+AK+ GCYVVGSAG+NEKV +L
Sbjct:   142 GMPGMTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKIMGCYVVGSAGSNEKVDLL 201

Query:    75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
             K K GFDDAFNYK E DL A LKR FP+GID+YF+NVGG+ML+A + NM L GR+A CG+
Sbjct:   202 KNKFGFDDAFNYKAEPDLNAALKRCFPEGIDIYFENVGGKMLDAVLLNMKLHGRIAVCGM 261

Query:   135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
             IS+     +  V N+ +++YKRI+I+GF+ +D+FD H  F+      +R GKI  +ED+ 
Sbjct:   262 ISQYNLEDQEGVHNLANVIYKRIRIKGFVVSDYFDKHLKFLDFVLPYIREGKITYVEDVV 321

Query:   195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
              G+++ PSA  G F G N+GK+ + +A E
Sbjct:   322 EGLENGPSALLGLFHGKNVGKQLIAVARE 350

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2148131 AER "alkenal reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 111/209 (53%), Positives = 150/209 (71%)

Query:    20 GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
             G  G TAY GFYE+   ++GE V+VS   GA G LVGQ AK+ GCYVVGSAG+ EKV +L
Sbjct:   137 GMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLL 196

Query:    75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
             K K GFDDAFNYKEE+DL A LKR FP+GID+YF+NVGG+ML+A + NMN+ GR+A CG+
Sbjct:   197 KTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGM 256

Query:   135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
             IS+    ++  V N+ +I+YKRI+IQGF+ +D +D +  F+      +R GKI  +ED++
Sbjct:   257 ISQYNLENQEGVHNLSNIIYKRIRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVA 316

Query:   195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
             +G++  P A  G F G N+GK+ V +A E
Sbjct:   317 DGLEKAPEALVGLFHGKNVGKQVVVVARE 345

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IGI;IEP;IMP

GO:0032440 "2-alkenal reductase [NAD(P)

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2148166 AT5G16990 [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 112/209 (53%), Positives = 149/209 (71%)

Query:    20 GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
             G  G TAY GFYE+   +KGE V+VS   GA G LVGQ+AK+ GCYVVGSAG+ EKV +L
Sbjct:   135 GMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLL 194

Query:    75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
             K K GFDDAFNYKEE+DL A LKR FP GID+YF+NVGG+ML+A + NMN  GR+A CG+
Sbjct:   195 KTKFGFDDAFNYKEESDLSAALKRCFPKGIDMYFENVGGKMLDAVLLNMNPHGRIAVCGM 254

Query:   135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
             IS+    ++  V N+ +I+YKRI+IQGF+  D +D +  F+ +    ++ GKI  +ED++
Sbjct:   255 ISQYNLENQEGVHNLSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITYVEDVA 314

Query:   195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
             +G++  P A  G F G N+GK+ V IA E
Sbjct:   315 DGLEKAPEALVGLFHGKNVGKQVVVIARE 343

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IGI;IEP

TAIR|locus:2153759 AT5G37980 [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 114/209 (54%), Positives = 146/209 (69%)

Query:    20 GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
             G  G TAYVGFYEI   +KGE VFVS   GA G LVGQ+AK+ GCYVVGSA + EKV +L
Sbjct:   145 GIPGLTAYVGFYEICSPKKGETVFVSAASGAVGQLVGQFAKMAGCYVVGSASSKEKVDLL 204

Query:    75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
             K K G+D+AFNYKEE DL A LKR FP+GID+YF+NVGG+ML+A + NM   GR+AACG+
Sbjct:   205 KTKFGYDEAFNYKEEHDLSAALKRCFPEGIDIYFENVGGKMLDAVLENMRTHGRIAACGM 264

Query:   135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
             IS+        V N+  IVYKRI++QGF + + FD +  F+      +R GKI  +EDI+
Sbjct:   265 ISQYNLKEPEGVHNLASIVYKRIRVQGFAAVEFFDKYSKFLDFILPYVREGKITYVEDIA 324

Query:   195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
              G+++ PSA  G F G N+GK+ V +A E
Sbjct:   325 QGLENGPSALIGLFHGKNVGKQLVAVARE 353

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2028736 AT1G26320 [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 116/209 (55%), Positives = 143/209 (68%)

Query:    20 GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
             G  G TAY GFYE+   +KGE VFVS   GA G LVGQ+AKL GCYVVGSAG+ EKV +L
Sbjct:   143 GMPGMTAYAGFYEVCSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVYLL 202

Query:    75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
             K K GFDDAFNYKEE D  A LKRYFP+GID+YF+NVGG+ML+A + NM L GRVA CG+
Sbjct:   203 KTKFGFDDAFNYKEEKDFSAALKRYFPEGIDIYFENVGGKMLDAVLINMKLHGRVAVCGM 262

Query:   135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
             IS+        V N+  I+YKRI++QGF   D +D +  F+      +R GKI  +EDI+
Sbjct:   263 ISQYNLVDPEGVHNLPTILYKRIQLQGFGVCDFYDKYPKFLDFVLPYIREGKITYVEDIA 322

Query:   195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
              G +S PSA  G F G N+GK+   +A E
Sbjct:   323 EGFESGPSALLGLFEGKNVGKQLFVVARE 351

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2034109 AT1G65560 [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 112/210 (53%), Positives = 147/210 (70%)

Query:    20 GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
             G +GFTAY GF EI   +KG+ VFVS   GA G LVGQ AKL GCYVVGSAG+ +KV IL
Sbjct:   141 GMAGFTAYAGFNEICCPKKGDSVFVSAACGAVGQLVGQLAKLHGCYVVGSAGSKQKVEIL 200

Query:    75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
             K +LG+D+AFNYKEE DL   LKRYFP+GID+YFDNVGG ML+AA+ NM + GR+A CG+
Sbjct:   201 KNELGYDEAFNYKEEADLDTALKRYFPEGIDIYFDNVGGSMLDAALLNMKVRGRIALCGM 260

Query:   135 IS-ECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDI 193
             +S +    S + + N+   +YKR++++GFL +D+  +   F+       + GKI  +EDI
Sbjct:   261 VSLQSLSTSSQGIKNLYSAIYKRLRLEGFLQSDYLHIFPQFLENVKRYYKEGKIVYVEDI 320

Query:   194 SNGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
             S G+D  P+A  G F G NIGK+ VR+A E
Sbjct:   321 SEGLDLAPAALVGLFSGKNIGKQVVRVAKE 350

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2154041 AT5G38000 [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 112/207 (54%), Positives = 144/207 (69%)

Query:    20 GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
             G  G TAY+GFYEI   +KGE VFVS   GA G LVGQ+AK+ GCYVVGSA + EKV +L
Sbjct:   145 GIPGLTAYIGFYEICSPKKGETVFVSAASGAVGQLVGQFAKMAGCYVVGSASSEEKVDLL 204

Query:    75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
             K K G+DDAFNYKEE DL A LKR FP+GID+YF+NVGG+MLEA + NM   GR+AACG+
Sbjct:   205 KTKFGYDDAFNYKEEKDLSAALKRCFPEGIDIYFENVGGKMLEAVLENMRTHGRIAACGM 264

Query:   135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
             IS+        + N   IV+KRI++QGF + + FD +  F+      +R GK+  +EDIS
Sbjct:   265 ISQYNLKKPEVLHNTATIVHKRIRVQGFAAVEFFDRYSKFLDFILPHVREGKLTYVEDIS 324

Query:   195 NGVDSIPSAFTGFFRGDNIGKKFVRIA 221
              G+++ PSA  G F G N+GK+ V +A
Sbjct:   325 QGLENGPSALIGLFHGKNVGKQLVEVA 351

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2153799 AT5G37940 [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 112/209 (53%), Positives = 144/209 (68%)

Query:    20 GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
             G  G TAYVGFYEI   +KGE VFVS   GA G LVGQ+AK+ GCYVVGSA + EKV +L
Sbjct:   145 GIPGLTAYVGFYEICSPKKGETVFVSAASGAVGQLVGQFAKMAGCYVVGSASSKEKVDLL 204

Query:    75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
             K K G+DDAFNYKEE DL A LKR FP+GID+YF+NVGG+ML+A + NM   GR+AACG+
Sbjct:   205 KTKFGYDDAFNYKEEKDLSAALKRCFPEGIDIYFENVGGKMLDAVLQNMRTHGRIAACGM 264

Query:   135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
             IS+        + N   IV+KRI++Q F + + FD +  F+      +R GKI  +EDI+
Sbjct:   265 ISQYNLKEPEGLHNTATIVHKRIRVQDFAAVEFFDRYSKFLDFILPHVREGKITYVEDIA 324

Query:   195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
              G+++ PSA  G F G N+GK+ V +A E
Sbjct:   325 QGLENGPSALIGLFHGKNVGKQLVEVARE 353

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

TAIR|locus:2148186 AT5G17000 [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 110/209 (52%), Positives = 146/209 (69%)

Query:    20 GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
             G  G TAY GFYE+   ++GE V+VS   GA G LVGQ+AK+ GCYVVGSAG+ EKV +L
Sbjct:   137 GMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSTEKVDLL 196

Query:    75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
             K K GFDDAFNYKEE DL A LKR FP GID+YF+NVGG+ML+A + NMN  GR+A CG+
Sbjct:   197 KTKFGFDDAFNYKEEPDLSAALKRCFPTGIDIYFENVGGKMLDAVLLNMNPHGRIAVCGM 256

Query:   135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
             IS+    ++  V N+ +I+YKRI+IQGF   D ++ +  F+      ++ GKI  +ED++
Sbjct:   257 ISQYNLENQEGVHNLSNIIYKRIRIQGFAVFDFYEKYSKFLDFVLPHIKEGKITYVEDVA 316

Query:   195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
             +G++  P A  G F G N+GK+ V IA E
Sbjct:   317 DGLEKGPEALVGLFHGKNVGKQVVVIARE 345

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0006979 "response to oxidative stress" evidence=IEP

UNIPROTKB|Q6WAU0 Q6WAU0 "(+)-pulegone reductase" [Mentha x piperita (taxid:34256)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 105/209 (50%), Positives = 148/209 (70%)

Query:    20 GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
             G  G TAY GF+EI   +KGE VFV+   G+ G LVGQ+AK+ GCYVVGSAG+ EKV +L
Sbjct:   134 GMPGMTAYAGFFEICSPKKGETVFVTAAAGSVGQLVGQFAKMFGCYVVGSAGSKEKVDLL 193

Query:    75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
             K K GFDDAFNYKEE+D    LKR+FP+GID+YFDNVGG+MLEA + NM + GR+A CG+
Sbjct:   194 KNKFGFDDAFNYKEESDYDTALKRHFPEGIDIYFDNVGGKMLEAVINNMRVHGRIAVCGM 253

Query:   135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
             +S+ +      V N++ ++ K+I++QGF+  D++ L+  F+ M    ++ GK+  +EDIS
Sbjct:   254 VSQYSLKQPEGVHNLLKLIPKQIRMQGFVVVDYYHLYPKFLEMVLPRIKEGKVTYVEDIS 313

Query:   195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
              G++S PSA  G + G N+G + V ++ E
Sbjct:   314 EGLESAPSALLGVYVGRNVGNQVVAVSRE 342

GO:0042214 "terpene metabolic process" evidence=IDA

GO:0052579 "(+)-pulegone reductase, (+)-isomenthone as substrate, activity" evidence=IDA

GO:0052580 "(+)-pulegone reductase, (-)-menthone as substrate, activity" evidence=IDA

GO:0070402 "NADPH binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.1.81	LOW CONFIDENCE prediction!
3rd Layer	1.3.1	LOW CONFIDENCE prediction!
3rd Layer	1.3.1.74	LOW CONFIDENCE prediction!
3rd Layer	1.3.1.48	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00060573 hypothetical protein (347 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	223
cd08295	338	cd08295, double_bond_reductase_like, Arabidopsis a	1e-108
PLN03154	348	PLN03154, PLN03154, putative allyl alcohol dehydro	5e-84
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	3e-82
cd08294	329	cd08294, leukotriene_B4_DH_like, 13-PGR is a bifun	8e-66
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	2e-65
TIGR02825	325	TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehy	2e-46
cd08293	345	cd08293, PTGR2, Prostaglandin reductase	1e-38
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	1e-34
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	2e-18
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	9e-18
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	2e-16
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	1e-14
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	4e-14
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	2e-13
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	2e-13
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	3e-13
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	2e-12
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	9e-12
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	1e-10
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	1e-10
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	2e-10
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	7e-10
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	3e-09
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	1e-08
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	4e-08
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	6e-08
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	9e-08
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	1e-07
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	8e-07
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	2e-06
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	3e-06
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	7e-06
smart00829	287	smart00829, PKS_ER, Enoylreductase	1e-05
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	2e-05
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	8e-05
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	2e-04
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	3e-04
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	4e-04
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	8e-04
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	8e-04
pfam13602	129	pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenas	0.001
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	0.001
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	0.001
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	0.001
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	0.002
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	0.003

>gnl|CDD|176255 cd08295, double_bond_reductase_like, Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

 Score =  314 bits (807), Expect = e-108
 Identities = 119/206 (57%), Positives = 153/206 (74%), Gaps = 5/206 (2%)

Query: 20  GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY GFYE+   +KGE VFVS   GA G LVGQ AKL GCYVVGSAG++EKV +L
Sbjct: 133 GMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLL 192

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K KLGFDDAFNYKEE DL A LKRYFP+GID+YFDNVGG+ML+A + NMNL GR+AACG+
Sbjct: 193 KNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGM 252

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           IS+        V N+++I+YKR+KIQGFL  D+   + +F+      ++ GK++ +EDI+
Sbjct: 253 ISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYVEDIA 312

Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRI 220
           +G++S P AF G F G NIGK+ V++
Sbjct: 313 DGLESAPEAFVGLFTGSNIGKQVVKV 338

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in inflamatory cells, and in other cells by bifunctional LTB4 12-HD/PGR. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 338

>gnl|CDD|215606 PLN03154, PLN03154, putative allyl alcohol dehydrogenase; Provisional

 Score =  252 bits (646), Expect = 5e-84
 Identities = 112/209 (53%), Positives = 154/209 (73%), Gaps = 5/209 (2%)

Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G +GFTAY GFYE+   +KG+ VFVS   GA G LVGQ AKL GCYVVGSAG+++KV +L
Sbjct: 140 GMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLL 199

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K KLGFD+AFNYKEE DL A LKRYFP+GID+YFDNVGG+ML+AA+ NM + GR+A CG+
Sbjct: 200 KNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVGGDMLDAALLNMKIHGRIAVCGM 259

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           +S  + ++ + + N+ +++ KRI++QGFL +D+  L   F+       + GKI  +ED+S
Sbjct: 260 VSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYIEDMS 319

Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
            G++S P+A  G F G N+GK+ +R+A E
Sbjct: 320 EGLESAPAALVGLFSGKNVGKQVIRVAKE 348

Length = 348

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score =  247 bits (634), Expect = 3e-82
 Identities = 93/201 (46%), Positives = 122/201 (60%), Gaps = 6/201 (2%)

Query: 20  GTSGFTAYVGFYEISQ--KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G +G TAY G  EI +   GE V VS   GA G +VGQ AKL G  VVG AG++EK   L
Sbjct: 127 GMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWL 186

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
            E+LGFD A NYK   DL   LK   PDGIDVYFDNVGGE+L+AA+  +N  GR+A CG 
Sbjct: 187 VEELGFDAAINYKTP-DLAEALKEAAPDGIDVYFDNVGGEILDAALTLLNKGGRIALCGA 245

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           IS+          N+ +I+ KR+ +QGF+ +D+ D   + ++     L  GK++  ED+ 
Sbjct: 246 ISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYREDVV 305

Query: 195 NGVDSIPSAFTGFFRGDNIGK 215
            G+++ P AF G F G N GK
Sbjct: 306 EGLENAPEAFLGLFTGKNTGK 326

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176254 cd08294, leukotriene_B4_DH_like, 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

 Score =  205 bits (525), Expect = 8e-66
 Identities = 88/207 (42%), Positives = 122/207 (58%), Gaps = 8/207 (3%)

Query: 20  GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY G  EI   + GE V V+   GA G LVGQ AK+ GC V+G AG+++KVA L
Sbjct: 125 GMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWL 184

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           KE LGFD  FNYK    L+  LK   PDGID YFDNVGGE     +++MN FGRVA CG 
Sbjct: 185 KE-LGFDAVFNYKTV-SLEEALKEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGS 242

Query: 135 ISEC-ADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDI 193
           IS       K+       I++K++K++GF+     D   + +      ++ GK++  E +
Sbjct: 243 ISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYREHV 302

Query: 194 SNGVDSIPSAFTGFFRGDNIGKKFVRI 220
           + G +++P AF G  +G+N GK  V++
Sbjct: 303 TEGFENMPQAFIGMLKGENTGKAIVKV 329

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score =  205 bits (523), Expect = 2e-65
 Identities = 89/210 (42%), Positives = 118/210 (56%), Gaps = 8/210 (3%)

Query: 20  GTSGFTAYVGFYEISQ--KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY G  +I Q   GE V VS   GA G +VGQ AKL GC VVG AG  EK   L
Sbjct: 132 GMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFL 191

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
            E+LGFD   +YK E D    LK   P GIDVYF+NVGGE+L+A +  +NLF R+  CG 
Sbjct: 192 TEELGFDAGIDYKAE-DFAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGA 250

Query: 135 ISEC-ADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQ-DFISMTCDALRAGKIQPLED 192
           IS+  A         +  ++ KR+++QGF+    +D    + +      ++ GKIQ  E 
Sbjct: 251 ISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRET 310

Query: 193 ISNGVDSIPSAFTGFFRGDNIGKKFVRIAG 222
           I +G+++ P AF G   G N GK  V++A 
Sbjct: 311 IVDGLENAPEAFIGLLSGKNFGKLVVKVAD 340

Length = 340

>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

 Score =  156 bits (395), Expect = 2e-46
 Identities = 89/207 (42%), Positives = 120/207 (57%), Gaps = 8/207 (3%)

Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY G  EI   + GE V V+   GA G +VGQ AKL GC VVG+AG++EKVA L
Sbjct: 120 GMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL 179

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K KLGFD AFNYK    L+ TLK+  PDG D YFDNVGGE     +  M  FGR+A CG 
Sbjct: 180 K-KLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGA 238

Query: 135 ISECADASKRAV-PNMIDIVYKRIKIQGFLSTD-HFDLHQDFISMTCDALRAGKIQPLED 192
           IS           P    ++Y+ ++++GF+      ++ Q  +      +  GKIQ  E 
Sbjct: 239 ISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYKEY 298

Query: 193 ISNGVDSIPSAFTGFFRGDNIGKKFVR 219
           +  G +++P+AF G  +G+N+GK  V+
Sbjct: 299 VIEGFENMPAAFMGMLKGENLGKTIVK 325

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Length = 325

>gnl|CDD|176253 cd08293, PTGR2, Prostaglandin reductase

 Score =  136 bits (344), Expect = 1e-38
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 27/226 (11%)

Query: 14  VFANGAGTSGFTAYVGFYEISQKGE------KVFV----SGAYGHLVGQYAKLGGC-YVV 62
            F    G  G TA +G   I +KG       +  V    +GA G L GQ  +L GC  VV
Sbjct: 128 YFLGAVGLPGLTALIG---IQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVV 184

Query: 63  GSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVAN 122
           G  G++EK  +LK +LGFD A NYK + ++   L+   P+G+DVYFDNVGGE+ +  ++ 
Sbjct: 185 GICGSDEKCQLLKSELGFDAAINYKTD-NVAERLRELCPEGVDVYFDNVGGEISDTVISQ 243

Query: 123 MNLFGRVAACGVISECADASKRAVPN-------MIDIVYKR-IKIQGFLSTDHFDLHQDF 174
           MN    +  CG IS+      + VP           I+ +R I  + FL  ++ D  ++ 
Sbjct: 244 MNENSHIILCGQISQ----YNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEA 299

Query: 175 ISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI 220
           I+     ++ GK++  E +  G+++   AF     G NIGK+ V++
Sbjct: 300 IAQLSQWVKEGKLKVKETVYEGLENAGEAFQSMMNGGNIGKQIVKV 345

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 345

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score =  125 bits (315), Expect = 1e-34
 Identities = 67/210 (31%), Positives = 100/210 (47%), Gaps = 13/210 (6%)

Query: 21  TSGFTAYVGFYEISQ--KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK 75
            SG TA +   E+ +   GE V V+   G  G    Q AKL GC+V+G+  ++EK   LK
Sbjct: 122 VSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLK 181

Query: 76  EKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVI 135
             LG D   NYK E DL   LK+ +P G+DV +++VGGEM +  V N+ L GR+   G I
Sbjct: 182 S-LGCDRPINYKTE-DLGEVLKKEYPKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFI 239

Query: 136 SECADASKRAVPNMIDIVYKRIK----IQGFLSTDHFDLHQDFISMTCDALRAGKIQPLE 191
           S     +  +      +  K +     ++GF    +  L    +       + GK+    
Sbjct: 240 SGYQSGTGPSPVKGATLPPKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEV 299

Query: 192 DIS--NGVDSIPSAFTGFFRGDNIGKKFVR 219
           D +   G++S+  A    + G NIGK  V 
Sbjct: 300 DPTRFRGLESVADAVDYLYSGKNIGKVVVE 329

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 14/209 (6%)

Query: 20  GTSGFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
             +G TA++  ++ +  + GE V V   +G  G    Q AK  G  VV    ++EK+ +L
Sbjct: 124 PLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELL 183

Query: 75  KEKLGFDDAFNYKEETDLKATLKR-YFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACG 133
           K +LG D   NY+EE D    ++      G+DV  D VGG+   A++A +   GR+ + G
Sbjct: 184 K-ELGADHVINYREE-DFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIG 241

Query: 134 VISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTC-DALRAGKIQPLED 192
            +S           N++ ++ KR+ ++G                   D L +GK++P+ D
Sbjct: 242 ALSGGPPVP----LNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPVID 297

Query: 193 ISNGVDSIPSAFTGFF-RGDNIGKKFVRI 220
               +   P+A           GK  +++
Sbjct: 298 RVYPLAEAPAAAAHLLLERRTTGKVVLKV 326

Length = 326

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 78.9 bits (195), Expect = 9e-18
 Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 12/157 (7%)

Query: 19  AGTSGFTAYVGFYEIS--QKGEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
                 TAY         + G+ V V GA   G L  Q AK  G  V+ +  ++EK+ + 
Sbjct: 115 LPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELA 174

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEM-LEAAVANMNLFGRVAACG 133
           KE LG D   +YKEE DL+  L+     G DV  D VGG   L  A+  +   GR+   G
Sbjct: 175 KE-LGADHVIDYKEE-DLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVG 232

Query: 134 VISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDL 170
             S         + ++  +++K + I G       D 
Sbjct: 233 GTSGGP-----PLDDLRRLLFKELTIIGSTGGTREDF 264

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 72.3 bits (178), Expect = 2e-16
 Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 10/131 (7%)

Query: 47  GHLVGQYAK-LGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPD-GI 104
           G    Q AK LG   V+    + EK+ + KE LG D   NY++E D    ++      G+
Sbjct: 3   GLAAVQLAKALGAARVIAVDRSEEKLELAKE-LGADHVINYRDE-DFVERVRELTGGRGV 60

Query: 105 DVYFDNVG-GEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFL 163
           DV  D VG    LE A+  +   GRV   G+              + D++ K + I G L
Sbjct: 61  DVVIDCVGAPATLEQALELLRPGGRVVVVGLPG-----GAPVPFPLRDLLLKELTILGSL 115

Query: 164 STDHFDLHQDF 174
                +  +  
Sbjct: 116 GGGREEFEEAL 126

Length = 131

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 70.9 bits (175), Expect = 1e-14
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 15/145 (10%)

Query: 24  FTAYVGFYEIS--QKGEKVFVS-GAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKE 76
           FTA+   +++   + GE V +  GA G  VG    Q AK  G  V+ +AG+ EK+   + 
Sbjct: 125 FTAWQNLFQLGGLKAGETVLIHGGASG--VGTAAIQLAKALGARVIATAGSEEKLEACRA 182

Query: 77  KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
            LG D A NY+ E   +   +     G+DV  D VGG+ L   +  +   GR+   G++ 
Sbjct: 183 -LGADVAINYRTEDFAEEVKEATGGRGVDVILDMVGGDYLARNLRALAPDGRLVLIGLL- 240

Query: 137 ECADASKRAVPNMIDIVYKRIKIQG 161
                  +A  ++  ++ KR+ + G
Sbjct: 241 ----GGAKAELDLAPLLRKRLTLTG 261

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 69.6 bits (171), Expect = 4e-14
 Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 24/189 (12%)

Query: 35  QKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEET 90
           + GE V V GA G  VG    Q AKL G  V+ +AG+ +K+   KE LG D   +Y++E 
Sbjct: 165 RPGETVLVHGA-GSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE-LGADYVIDYRKED 222

Query: 91  DLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMI 150
            ++   +     G+DV  ++VG    E ++ ++   GR+  CG     A     A  ++ 
Sbjct: 223 FVREVRELTGKRGVDVVVEHVGAATWEKSLKSLARGGRLVTCG-----ATTGYEAPIDLR 277

Query: 151 DIVYKRIKIQG-FLSTDHFDLHQDFISMTCDALR---AGKIQPLEDISNGVDSIPSAFTG 206
            + ++++ I G  + T   +L +        ALR    GK++P+ D    ++    A   
Sbjct: 278 HVFWRQLSILGSTMGTKA-ELDE--------ALRLVFRGKLKPVIDSVFPLEEAAEAHRR 328

Query: 207 FFRGDNIGK 215
               +  GK
Sbjct: 329 LESREQFGK 337

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 67.5 bits (166), Expect = 2e-13
 Identities = 60/219 (27%), Positives = 95/219 (43%), Gaps = 31/219 (14%)

Query: 15  FANGAG--TSGFTAYVGFYEIS--QKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAG 66
           F   A    +  TAY      +  Q GE V V GA G  VG    Q AK  G  V+ +A 
Sbjct: 114 FEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGG-VGLAAVQLAKALGARVIAAAS 172

Query: 67  TNEKVAILKEKLGFDDAFNYKEETDLKATLK-RYFPDGIDVYFDNVGGEMLEAAVANMNL 125
           + EK+A+ +  LG D   +Y++  DL+  +K      G+DV +D VGG++ EA++ ++  
Sbjct: 173 SEEKLALARA-LGADHVIDYRDP-DLRERVKALTGGRGVDVVYDPVGGDVFEASLRSLAW 230

Query: 126 FGRV----AACGVISECADASKRAVP-NMIDIVYKRIKIQGF----LSTDHFDLHQDFIS 176
            GR+     A G I          +P N++ +  K I + G      +    +L +  ++
Sbjct: 231 GGRLLVIGFASGEIP--------QIPANLLLL--KNISVVGVYWGAYARREPELLRANLA 280

Query: 177 MTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGK 215
              D L  GKI+P       ++    A          GK
Sbjct: 281 ELFDLLAEGKIRPHVSAVFPLEQAAEALRALADRKATGK 319

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 32/210 (15%)

Query: 24  FTAYVGFYEIS--QKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKEK 77
           FT +   ++    + GE V + G     +G    Q AK  G  V  +AG++EK A   E 
Sbjct: 125 FTVWSNLFQRGGLKAGETVLIHGGASG-IGTTAIQLAKAFGARVFTTAGSDEKCAA-CEA 182

Query: 78  LGFDDAFNYKEETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
           LG D A NY+EE D    +K      G+DV  D VGG  L   +  + L GR+   G   
Sbjct: 183 LGADIAINYREE-DFVEVVKAETGGKGVDVILDIVGGSYLNRNIKALALDGRIVQIGFQ- 240

Query: 137 ECADASKRAVPNMIDIVYKRIKIQGFLST-----DHF------DLHQDFISMTCDALRAG 185
                 ++A  ++  ++ KR+ I G  ST              +L +    +    L +G
Sbjct: 241 ----GGRKAELDLGPLLAKRLTITG--STLRARPVAEKAAIAAELREHVWPL----LASG 290

Query: 186 KIQPLEDISNGVDSIPSAFTGFFRGDNIGK 215
           +++P+ D    ++    A      GD+IGK
Sbjct: 291 RVRPVIDKVFPLEDAAQAHALMESGDHIGK 320

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 66.8 bits (164), Expect = 3e-13
 Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 14/156 (8%)

Query: 15  FANGA--GTSGFTAYVGFYEI--SQKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGT 67
           F  GA  G    TAY   +    ++ GE V V   SGA GH   Q A+  G  V+ +A +
Sbjct: 119 FEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS 178

Query: 68  NEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFG 127
            E   ++++  G D  FNY+ E      L      G+DV  + +    L   +  +   G
Sbjct: 179 AEGAELVRQ-AGADAVFNYRAEDLADRILAATAGQGVDVIIEVLANVNLAKDLDVLAPGG 237

Query: 128 RVAACGVISECADASKRAVPNMIDIVYKRIKIQGFL 163
           R+   G     +   +  +P    ++ K   I+G L
Sbjct: 238 RIVVYG-----SGGLRGTIPIN-PLMAKEASIRGVL 267

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 16  ANGAGTSGFTAYVGF--YEISQKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEK 70
           A     +G TA          + G++V +   SG  G    Q AK  G +V G   T   
Sbjct: 121 AAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RN 179

Query: 71  VAILKEKLGFDDAFNYKEE--TDLKATLKRYFPDGIDVYFDNVGGEMLE 117
             +++  LG D+  +Y  E    L A  ++Y     DV FD VG     
Sbjct: 180 AELVRS-LGADEVIDYTTEDFVALTAGGEKY-----DVIFDAVGNSPFS 222

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 63.0 bits (154), Expect = 9e-12
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 21  TSGFTAYVGFYEI--SQKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK 75
            +G TA+   +E+   + G+ V +   +G  G    Q AK  G  V+ +A        L+
Sbjct: 127 LAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASA-ANADFLR 185

Query: 76  EKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVA 121
             LG D+  +Y +    +A      P G+D   D VGGE L  ++A
Sbjct: 186 S-LGADEVIDYTKGDFERAAA----PGGVDAVLDTVGGETLARSLA 226

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 8/115 (6%)

Query: 23  GFTAYVGFYE--ISQKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK 77
           G TA+ G  +    Q G+ V +   +G  GH+  Q AK  G  V  +A + EK A     
Sbjct: 129 GITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFA-RS 186

Query: 78  LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAAC 132
           LG D    Y+E    +   +     G DV FD VGGE L+A+   + L+GRV + 
Sbjct: 187 LGADPIIYYRETVV-EYVAEHTGGRGFDVVFDTVGGETLDASFEAVALYGRVVSI 240

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 23/186 (12%)

Query: 35  QKGEKVFVSGAYG----HLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFN-YKEE 89
           +KG+ V V+GA G    H + Q AK  G  V+    + EK+ ILKE LG D   +  K  
Sbjct: 161 KKGDTVLVTGAGGGVGIHAI-QLAKALGARVIAVTRSPEKLKILKE-LGADYVIDGSKFS 218

Query: 90  TDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNM 149
            D+K         G DV  + VG   +E ++ ++N  GR+   G           A    
Sbjct: 219 EDVKKLG------GADVVIELVGSPTIEESLRSLNKGGRLVLIG-----NVTPDPAPLRP 267

Query: 150 IDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFR 209
             ++ K I+I G +S    D+           ++ GKI+P+ D    ++ I  A      
Sbjct: 268 GLLILKEIRIIGSISATKADV-----EEALKLVKEGKIKPVIDRVVSLEDINEALEDLKS 322

Query: 210 GDNIGK 215
           G  +G+
Sbjct: 323 GKVVGR 328

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 51/216 (23%), Positives = 76/216 (35%), Gaps = 45/216 (20%)

Query: 25  TAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG 79
           TAY    +++  QKGE V +   +G  G    Q A+  G  V  + G+ EK   L+E  G
Sbjct: 95  TAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELGG 154

Query: 80  FDDAFNYKEETDLKATLKRYF-PDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISEC 138
             D      +      + R     G+DV  +++ GE+L A+   +  FGR          
Sbjct: 155 PVDHIFSSRDLSFADGILRATGGRGVDVVLNSLSGELLRASWRCLAPFGR---------- 204

Query: 139 ADASKRAVPNMIDIVYKRIKIQGFLSTDHF---------DLHQDFISM----------TC 179
                      ++I  + I     L    F         DL Q                 
Sbjct: 205 ----------FVEIGKRDILSNSKLGMRPFLRNVSFSSVDLDQLARERPELLRELLREVL 254

Query: 180 DALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGK 215
           + L AG ++PL        S   AF     G +IGK
Sbjct: 255 ELLEAGVLKPLPPTVVPSASEIDAFRLMQSGKHIGK 290

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 57.6 bits (140), Expect = 7e-10
 Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 21/127 (16%)

Query: 20  GTSGFTAYVGFYEISQKGEK-----VFVSGAYGHLVGQYA-----KLGGCY-VVGSAGTN 68
           GT+GFTA +  + +   G+      V V+GA G  VG  A     KLG  Y VV   G  
Sbjct: 125 GTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGG-VGSIAVAILAKLG--YTVVALTGKE 181

Query: 69  EKVAILKEKLGFDDAFNYKE--ETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLF 126
           E+   LK  LG  +  + ++  +   K  LK  +   ID     VGG++L   +      
Sbjct: 182 EQADYLKS-LGASEVLDREDLLDESKKPLLKARWAGAID----TVGGDVLANLLKQTKYG 236

Query: 127 GRVAACG 133
           G VA+CG
Sbjct: 237 GVVASCG 243

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.2 bits (134), Expect = 3e-09
 Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 32/211 (15%)

Query: 23  GFTAYVGFYEIS--QKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKE 76
           G TA+   + +   + G+ V V G  G  V     Q+AK  G  V+ ++ ++EK+   K 
Sbjct: 145 GLTAWNALFGLGPLKPGDTVLVQGTGG--VSLFALQFAKAAGARVIATSSSDEKLERAK- 201

Query: 77  KLGFDDAFNYKEETD-----LKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAA 131
            LG D   NY+   D     LK T  R    G+D   +  G   L  ++  +   G ++ 
Sbjct: 202 ALGADHVINYRTTPDWGEEVLKLTGGR----GVDHVVEVGGPGTLAQSIKAVAPGGVISL 257

Query: 132 CGVISECADASKRAVPNMIDIVYKRIKIQGFL--STDHFDLHQDFISMTCDALRAGKIQP 189
            G +S        A   ++ ++ K   ++G    S         F +M   A+ A +I+P
Sbjct: 258 IGFLS-----GFEAPVLLLPLLTKGATLRGIAVGSR------AQFEAM-NRAIEAHRIRP 305

Query: 190 LEDISNGVDSIPSAFTGFFRGDNIGKKFVRI 220
           + D     +    A+     G + GK  +R+
Sbjct: 306 VIDRVFPFEEAKEAYRYLESGSHFGKVVIRV 336

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 53.6 bits (130), Expect = 1e-08
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 35  QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETD 91
           + G+ V V   +G  G L+ Q+AK  G  V+G+  + EK  + +   G D   NY++E D
Sbjct: 135 KPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA-AGADHVINYRDE-D 192

Query: 92  LKATLKRYFPD-GIDVYFDNVGGEMLEA 118
               ++      G+DV +D VG +  E 
Sbjct: 193 FVERVREITGGRGVDVVYDGVGKDTFEG 220

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 47/202 (23%), Positives = 74/202 (36%), Gaps = 16/202 (7%)

Query: 23  GFTAYVGFYEISQKGEKVFVSGA--YGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLG 79
            +  +       + G  V V GA   G L    AKL G   V+    + E++ + KE  G
Sbjct: 156 AYHGHA-ERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG 214

Query: 80  FDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-GEMLEAAVANMNLFGRVAACGVISEC 138
            D   N  E+      L+     G DV  + VG    L+ A+  +   G V   GV    
Sbjct: 215 ADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGG- 273

Query: 139 ADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISN--G 196
               +        +V K + ++G L     +  +       D L +GKI P + I++   
Sbjct: 274 ----EDIPLPAGLVVSKELTLRGSLRPSGREDFER----ALDLLASGKIDPEKLITHRLP 325

Query: 197 VDSIPSAFTGFFRGDNIGKKFV 218
           +D    A+  F        K V
Sbjct: 326 LDDAAEAYELFADRKEEAIKVV 347

Length = 350

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 13/117 (11%)

Query: 22  SGFTAYVGFYEI--SQKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTN--EKVAI 73
           +G TAY   ++    + G  + ++G  G  VG    Q AK  G  V+ +      E V  
Sbjct: 125 AGLTAYQALFKKLRIEAGRTILITGGAGG-VGSFAVQLAKRAGLRVITTCSKRNFEYVK- 182

Query: 74  LKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVA 130
               LG D   +Y +E   +   +     G+D   D VGGE   A    +   G + 
Sbjct: 183 ---SLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTVGGETAAALAPTLAFNGHLV 236

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 51.0 bits (123), Expect = 9e-08
 Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 21/185 (11%)

Query: 35  QKGEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL 92
           + G+ V V GA   GH+  QYAK  G  V+    + EK+ + K KLG D   N  +   L
Sbjct: 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK-KLGADHVINSSDSDAL 223

Query: 93  KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDI 152
           +A +K       D   D VG   LE ++  +   G +   G+                 +
Sbjct: 224 EA-VKEIA----DAIIDTVGPATLEPSLKALRRGGTLVLVGLPGGGPIPL----LPAFLL 274

Query: 153 VYKRIKIQGFLSTDHFDLHQ--DFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRG 210
           + K I I G L     DL +  DF +        GKI+P    +  +D I  A+    +G
Sbjct: 275 ILKEISIVGSLVGTRADLEEALDFAA-------EGKIKPEILETIPLDEINEAYERMEKG 327

Query: 211 DNIGK 215
              G+
Sbjct: 328 KVRGR 332

Length = 339

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 49/237 (20%), Positives = 82/237 (34%), Gaps = 53/237 (22%)

Query: 15  FANGAG--TSGFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAK-LGGCYVVGSAG 66
           F   A    +  TAY   +E+   + G+ V V   +G  G   GQ  K +    VVG+A 
Sbjct: 113 FEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVTVVGTAS 172

Query: 67  TNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLF 126
            + K   LKE  G     +Y+ + D    +K+  P+G+D+  D +GGE    +   +   
Sbjct: 173 AS-KHEALKE-NGVTHVIDYRTQ-DYVEEVKKISPEGVDIVLDALGGEDTRKSYDLLKPM 229

Query: 127 GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCD------ 180
           GR+    V+   A+       +   +  K      + +    D     + +  +      
Sbjct: 230 GRL----VVYGAANLVTGEKRSWFKLAKK------WWNRPKVDP----MKLISENKSVLG 275

Query: 181 ----------------------ALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGK 215
                                     GKI+P  D     + +  A        NIGK
Sbjct: 276 FNLGWLFEERELLTEVMDKLLKLYEEGKIKPKIDSVFPFEEVGEAMRRLQSRKNIGK 332

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 34/128 (26%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 16  ANGAGTSGFTAYVGFYEIS--QKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNE 69
           A        TAY    E++  + G+ V ++ A    VG    Q A   G  V+ +  T+E
Sbjct: 122 AAALWMQYLTAYGALVELAGLRPGDSVLITAA-SSSVGLAAIQIANAAGATVIATTRTSE 180

Query: 70  KVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRV 129
           K   L   LG        EE  +   L+     G+DV FD VGG         +   G +
Sbjct: 181 KRDALLA-LGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGGPQFAKLADALAPGGTL 239

Query: 130 AACGVISE 137
              G +S 
Sbjct: 240 VVYGALSG 247

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 11/183 (6%)

Query: 35  QKGEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL 92
             G+ V V GA   G L  Q+ K+ G   V +   +++   +  +LG DD  N KEE D+
Sbjct: 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEE-DV 216

Query: 93  KATLKRYFPDGIDVYFDNVG-GEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMID 151
           +   +     G D+  +  G    +E A+A     G+V   G+       S+ A      
Sbjct: 217 EKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLSEEA---FEK 273

Query: 152 IVYKRIKIQG-FLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS--NGVDSIPSAFTGFF 208
           I+ K + IQG + S        ++     D L +GKI+    I+    ++  P+AF    
Sbjct: 274 ILRKELTIQGSWNSYSAPFPGDEW-RTALDLLASGKIKVEPLITHRLPLEDGPAAFERLA 332

Query: 209 RGD 211
             +
Sbjct: 333 DRE 335

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 46/209 (22%), Positives = 75/209 (35%), Gaps = 55/209 (26%)

Query: 35  QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETD 91
            KGE + +   +G  G +  Q A+L G  +  +A +++K+  LK +LG     NY EE D
Sbjct: 119 AKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLK-QLGVPHVINYVEE-D 176

Query: 92  LKATLKRYFP-DGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMI 150
            +  + R     G+DV  + + GE ++  +  +   GR                      
Sbjct: 177 FEEEIMRLTGGRGVDVVINTLSGEAIQKGLNCLAPGGR---------------------- 214

Query: 151 DIVYKRIKIQGFLSTDHFDL-----HQDFISMTCDAL-------------------RAGK 186
              Y  I +    S    DL     +Q F S+    L                     G+
Sbjct: 215 ---YVEIAMTALKSAPSVDLSVLSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGE 271

Query: 187 IQPLEDISNGVDSIPSAFTGFFRGDNIGK 215
           ++P        D I  A+      +NIGK
Sbjct: 272 LRPTVSRIFPFDDIGEAYRYLSDRENIGK 300

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 45.6 bits (109), Expect = 7e-06
 Identities = 43/126 (34%), Positives = 58/126 (46%), Gaps = 20/126 (15%)

Query: 20  GTSGFTAYVGFYEISQKG-----EKVFVSGAYGHLVGQYA-----KLGGCY-VVGSAGTN 68
           GT+GFTA +    + + G       V V+GA G  VG  A     KLG  Y VV S G  
Sbjct: 124 GTAGFTAALSVMALERNGLTPEDGPVLVTGATGG-VGSLAVAILSKLG--YEVVASTGKA 180

Query: 69  EKVAILKEKLGFDDAFNYKEETD-LKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFG 127
           E+   LKE LG  +  + ++ +   K   K  +   +D     VGG  L   +A +   G
Sbjct: 181 EEEDYLKE-LGASEVIDREDLSPPGKPLEKERWAGAVD----TVGGHTLANVLAQLKYGG 235

Query: 128 RVAACG 133
            VAACG
Sbjct: 236 AVAACG 241

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 20/117 (17%)

Query: 25  TAYVGFYEIS--QKGEKVFV-SGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKEK 77
           TAY    +++  + GE V + + A G  VG    Q A+  G  V  +AG+ EK   L+  
Sbjct: 90  TAYYALVDLARLRPGESVLIHAAAGG--VGQAAIQLARHLGAEVFATAGSPEKRDFLRA- 146

Query: 78  LGFDDA--FNYK----EETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGR 128
           LG  D   F+ +     +  L+AT  R    G+DV  +++ GE L+A++  +   GR
Sbjct: 147 LGIPDDHIFSSRDLSFADEILRATGGR----GVDVVLNSLSGEFLDASLRCLAPGGR 199

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 14  VFANGAGTSGFTAYVGFYEISQKGEKVFVSGA---YGHLVGQYAKLGGCYVVGSAGTNEK 70
           V  +G    G    +    +   G+ V V+ A    G L+ Q AK  G  VVG+AG   K
Sbjct: 124 VVHDGRTALGL---LDLATL-TPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAK 179

Query: 71  VAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVA 121
            A+++  LG D A +Y          +     G+ V  D VGG +  AA+A
Sbjct: 180 TALVRA-LGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVGGAIGRAALA 229

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 44/185 (23%), Positives = 66/185 (35%), Gaps = 23/185 (12%)

Query: 37  GEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL 92
           G +V V+GA G  VG    Q A L G +VV   G+  +   L+E    +      E +  
Sbjct: 133 GRRVLVTGASGG-VGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGA 191

Query: 93  KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDI 152
                      +D+  D+VGG  L  A+  +   G V + G  S      + AV N    
Sbjct: 192 P----------VDLVVDSVGGPQLARALELLAPGGTVVSVGSSS-----GEPAVFNPAAF 236

Query: 153 VYK--RIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRG 210
           V      ++  F   D   L  D ++     + AG++ P          I  A       
Sbjct: 237 VGGGGGRRLYTFFLYDGEPLAAD-LARLLGLVAAGRLDPRIGWRGSWTEIDEAAEALLAR 295

Query: 211 DNIGK 215
              GK
Sbjct: 296 RFRGK 300

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 33/196 (16%)

Query: 35  QKGEKVFVSGAYG----HLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD------AF 84
           +KGE V V+GA G    H + Q AK  G  V+    +  K  I+ +   + D       F
Sbjct: 161 KKGETVLVTGAGGGVGIHAI-QVAKALGAKVIAVTSSESKAKIVSK---YADYVIVGSKF 216

Query: 85  NYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKR 144
           +  EE      +K+    G D+  + VG   LE ++ ++N+ G++   G +      S R
Sbjct: 217 S--EE------VKKI--GGADIVIETVGTPTLEESLRSLNMGGKIIQIGNVDPSPTYSLR 266

Query: 145 AVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAF 204
               +  I+ K I+I G +S    D+ +         +  GKI+P+      +  I  A 
Sbjct: 267 ----LGYIILKDIEIIGHISATKRDVEE-----ALKLVAEGKIKPVIGAEVSLSEIDKAL 317

Query: 205 TGFFRGDNIGKKFVRI 220
                   IGK  V+ 
Sbjct: 318 EELKDKSRIGKILVKP 333

Length = 334

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 19/183 (10%)

Query: 37  GEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL 92
           GE V V+GA G  VG    Q AK  G  V+  AG   K   ++  LG  D    ++   L
Sbjct: 178 GETVLVTGASG-GVGSALVQLAKRRGAIVIAVAGAA-KEEAVRA-LG-ADTVILRDAPLL 233

Query: 93  KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDI 152
               K    + +DV  D VGG +    +  +   GR    G I     A      ++  +
Sbjct: 234 ADA-KALGGEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAI-----AGPVVELDLRTL 287

Query: 153 VYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDN 212
             K + + G  ST      + F  +    +  G+I+P+   +  +  I  A   F    +
Sbjct: 288 YLKDLTLFG--STLGTR--EVFRRLV-RYIEEGEIRPVVAKTFPLSEIREAQAEFLEKRH 342

Query: 213 IGK 215
           +GK
Sbjct: 343 VGK 345

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 21/128 (16%)

Query: 20  GTSGFTAYVGFYEISQKG-----EKVFVSGAYGHLVGQYA-----KLGGCY-VVGSAGTN 68
           GT+GFTA +  + + + G       V V+GA G  VG  A     KLG  Y VV S G  
Sbjct: 125 GTAGFTAALSIHRLEENGLTPEQGPVLVTGATGG-VGSLAVSILAKLG--YEVVASTGKA 181

Query: 69  EKVAILKEKLGFDDAFNYKEETD--LKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLF 126
           +    LK KLG  +    +E  +  +K   K+ +   +D     VGG+ L   ++ +   
Sbjct: 182 DAADYLK-KLGAKEVIPREELQEESIKPLEKQRWAGAVD----PVGGKTLAYLLSTLQYG 236

Query: 127 GRVAACGV 134
           G VA  G+
Sbjct: 237 GSVAVSGL 244

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 39.4 bits (93), Expect = 8e-04
 Identities = 44/175 (25%), Positives = 66/175 (37%), Gaps = 31/175 (17%)

Query: 35  QKGEKVFVSGA--YGHLVGQYAKLGGC---YVVGSAGTNEKVAILKEKLGFDDAFNYKEE 89
           + G+   V GA   G L     K  G     V   +    ++A   E+LG     +  E 
Sbjct: 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELA---EELGATIVLDPTEV 227

Query: 90  TDLKATLKRYFPD-GIDVYFDNVGGEM-LEAAVANMNLFGRVAACGVISECADASKRAVP 147
            D+ A +++     G+DV FD  G +  L+ A+        +   G     A   K    
Sbjct: 228 -DVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDA------LRPRGTAVNVAIWEKPISF 280

Query: 148 NMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQ---------PLEDI 193
           N  D+V K   + G +     D  ++ I    D L +GKI          PLEDI
Sbjct: 281 NPNDLVLKEKTLTGSICYTRED-FEEVI----DLLASGKIDAEPLITSRIPLEDI 330

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 20/204 (9%)

Query: 25  TAYVGFYEIS--QKGEKVFV-SGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKEK 77
           TA+    +    +KG+ V + +GA G  VG    Q A+  G   + +  + EKV   K K
Sbjct: 127 TAWQLLKKHGDVKKGQSVLIHAGASG--VGTAAAQLAEKYGAATIITTSSEEKVDFCK-K 183

Query: 78  LGFDDAFNYKEETDLKATLKRYF-PDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
           L       Y +E      +K+     G+++  D VGG  L      + + G+    G + 
Sbjct: 184 LAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGFMG 243

Query: 137 ECADASKRAVPNMIDIVYKRIKIQGFL---STDHF--DLHQDFISMTCDALRAGKIQPLE 191
                +K    N++ ++ KR  I        +D +  DL   F       +  G+I+P+ 
Sbjct: 244 ----GAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKPIV 299

Query: 192 DISNGVDSIPSAFTGFFRGDNIGK 215
           D +  ++ +  A T   +  NIGK
Sbjct: 300 DRTYPLEEVAEAHTFLEQNKNIGK 323

Length = 334

>gnl|CDD|222256 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query: 78  LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGR-VAACGVIS 136
           LG D+  +Y  E   +AT      +G+DV  D VGGE L  A+  +   GR V+  G   
Sbjct: 1   LGADEVIDYTTEDFEEAT----AGEGVDVVLDTVGGETLLRALLALKPGGRLVSIGGPDL 56

Query: 137 ECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLED 192
             + A+K           + ++          +   D   +  + + AGK++P+ D
Sbjct: 57  LLSVAAKAG--------GRGVRGVFLFPVSPGEAGADLAELA-ELVEAGKLRPVID 103

Length = 129

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 42/143 (29%), Positives = 57/143 (39%), Gaps = 15/143 (10%)

Query: 23  GFTAYVGF-YEISQKGEKVFVSG--AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG 79
           G T Y        + GE+V V G    GHL  QYA+  G   V    + +K   L  KLG
Sbjct: 148 GITVYSALRDAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDK-RELARKLG 206

Query: 80  FDDAFNYKEETDLKATLKRYFPDGIDVYFDNV-GGEMLEAAVANMNLFGRVAACGVISEC 138
            D+  +   E D +A        G DV    V  G   EAA+  +   GR+   G     
Sbjct: 207 ADEVVDSGAELDEQAAA-----GGADVILVTVVSGAAAEAALGGLRRGGRIVLVG----- 256

Query: 139 ADASKRAVPNMIDIVYKRIKIQG 161
              S    P++  ++ KR  I G
Sbjct: 257 LPESPPFSPDIFPLIMKRQSIAG 279

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 40/175 (22%), Positives = 64/175 (36%), Gaps = 29/175 (16%)

Query: 34  SQKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKEKLG--FDDAFNYK 87
              G++V + GA G  VG    + A L G  V G+A      A L+E      D      
Sbjct: 137 VLTGQRVLIHGASG-GVGQALLELALLAGAEVYGTASE-RNHAALRELGATPID------ 188

Query: 88  EETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVP 147
                        P G+DV FD VGGE  E + A +   G +   G  +      +R++ 
Sbjct: 189 -YRTKDWLPAMLTPGGVDVVFDGVGGESYEESYAALAPGGTLVCYG-GNSSLLQGRRSLA 246

Query: 148 NMIDIVYKRIKIQGF---LSTDHFDLHQDFISMT----------CDALRAGKIQP 189
            +  ++ +  K++          + + +D                D L  GKI+P
Sbjct: 247 ALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRP 301

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 16/103 (15%)

Query: 22  SGFTAYVGFYEI------SQKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNEKV 71
           +G TA+     +      +  G++V + G  G  VG    Q  K  G +V  +   +   
Sbjct: 142 AGLTAWSALVNVGGLNPKNAAGKRVLILGGSGG-VGTFAIQLLKAWGAHVTTTC--STDA 198

Query: 72  AILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGE 114
             L + LG DD  +Y  E   +   +R      DV  D VGG+
Sbjct: 199 IPLVKSLGADDVIDYNNEDFEEELTER---GKFDVILDTVGGD 238

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)

Query: 22  SGFTAYVGFYEIS-QKGEKVFVSGA---YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK 77
           +G T Y    +   + G+ V +SGA    GHL  QYAK  G  V+     +EK+ + KE 
Sbjct: 150 AGVTVYKALKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE- 208

Query: 78  LGFDDAFNYKEETDLKATLK 97
           LG D   ++K+  D++A  +
Sbjct: 209 LGADAFVDFKKSDDVEAVKE 228

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 21/184 (11%)

Query: 37  GEKVFV--SGAYGHLVGQYAKL-GGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLK 93
           G+ V V  +G  G L+ Q  KL G   V  +    EK+ + K KLG  +  +     +  
Sbjct: 160 GDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK-KLGATETVD--PSREDP 216

Query: 94  ATLKRYFPDGIDVYFDNVG-GEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDI 152
              K   P G DV  +  G  + LE A+      G V   GV    A  ++ ++ +  +I
Sbjct: 217 EAQKEDNPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGV---YAPDARVSI-SPFEI 272

Query: 153 VYKRIKIQG-FLSTDHFDLHQDFISMTCDALRAGKIQPLEDISN--GVDSIPSAFTGFFR 209
             K + I G F++   F             L +GKI     +S+   ++ +P A  G   
Sbjct: 273 FQKELTIIGSFINPYTFPR-------AIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS 325

Query: 210 GDNI 213
           G  +
Sbjct: 326 GGAL 329

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	223
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
COG2130	340	Putative NADP-dependent oxidoreductases [General f	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.97
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.97
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.97
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.96
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.96
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	99.96
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.95
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.95
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.95
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.95
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.95
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.95
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.95
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.95
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.94
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.94
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	99.94
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.94
PLN02827	378	Alcohol dehydrogenase-like	99.94
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.94
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.94
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.93
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	99.93
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.93
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.93
PLN02740	381	Alcohol dehydrogenase-like	99.93
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.93
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.93
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.92
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.92
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.92
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.92
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.92
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.91
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.91
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.91
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.91
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.91
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.91
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.91
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.91
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.91
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.9
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.9
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.9
PTZ00354	334	alcohol dehydrogenase; Provisional	99.9
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.9
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.9
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.9
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.9
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.9
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.9
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.9
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.89
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.89
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.89
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.89
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.89
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.89
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.89
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.89
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.89
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.89
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.89
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.89
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.89
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.89
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.89
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.89
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.88
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.88
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.88
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.88
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.88
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.87
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.87
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.87
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.87
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.87
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.87
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.87
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.87
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.87
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.87
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.87
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.87
PRK10083	339	putative oxidoreductase; Provisional	99.87
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.87
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.87
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.86
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.86
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.86
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.86
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.86
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.86
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.85
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.85
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.85
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.85
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.85
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.85
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.85
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.85
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.84
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.84
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.83
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.83
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.83
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.83
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.82
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.82
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.82
PLN02702	364	L-idonate 5-dehydrogenase	99.82
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.81
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.81
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.8
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.8
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.79
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.78
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.78
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.77
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.73
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.72
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.47
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.44
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.59
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.46
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.32
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.27
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.24
PLN02494	477	adenosylhomocysteinase	98.22
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.22
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.92
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.82
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.75
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.71
PRK08324	681	short chain dehydrogenase; Validated	97.62
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.6
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.6
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.6
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.57
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.57
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.5
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.39
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.37
PRK12742	237	oxidoreductase; Provisional	97.35
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.35
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.35
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.32
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.31
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.28
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.27
PRK05693	274	short chain dehydrogenase; Provisional	97.23
PRK08265	261	short chain dehydrogenase; Provisional	97.22
PRK05993	277	short chain dehydrogenase; Provisional	97.19
PRK06182	273	short chain dehydrogenase; Validated	97.14
PRK05872	296	short chain dehydrogenase; Provisional	97.14
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.13
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.08
TIGR00438	188	rrmJ cell division protein FtsJ.	97.0
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.99
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	96.99
PRK06139	330	short chain dehydrogenase; Provisional	96.96
PRK04148	134	hypothetical protein; Provisional	96.96
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	96.94
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.94
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.93
PRK07060	245	short chain dehydrogenase; Provisional	96.93
PRK06057	255	short chain dehydrogenase; Provisional	96.93
PRK07109	334	short chain dehydrogenase; Provisional	96.93
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	96.93
COG4122	219	Predicted O-methyltransferase [General function pr	96.9
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	96.9
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.82
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.79
PRK12829	264	short chain dehydrogenase; Provisional	96.77
PRK07576	264	short chain dehydrogenase; Provisional	96.77
PLN02476	278	O-methyltransferase	96.76
PRK12939	250	short chain dehydrogenase; Provisional	96.74
PRK08017	256	oxidoreductase; Provisional	96.74
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.74
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	96.72
PRK07825	273	short chain dehydrogenase; Provisional	96.71
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	96.7
PRK07062	265	short chain dehydrogenase; Provisional	96.69
PLN02780	320	ketoreductase/ oxidoreductase	96.69
PRK06500	249	short chain dehydrogenase; Provisional	96.69
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.65
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.65
PRK07806	248	short chain dehydrogenase; Provisional	96.65
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.63
PRK00811	283	spermidine synthase; Provisional	96.62
PRK07831	262	short chain dehydrogenase; Provisional	96.62
PRK07063	260	short chain dehydrogenase; Provisional	96.62
PRK08177	225	short chain dehydrogenase; Provisional	96.62
PRK06949	258	short chain dehydrogenase; Provisional	96.62
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	96.61
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.61
PRK08339	263	short chain dehydrogenase; Provisional	96.61
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	96.6
PRK07814	263	short chain dehydrogenase; Provisional	96.59
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.59
PRK06180	277	short chain dehydrogenase; Provisional	96.56
PLN02366	308	spermidine synthase	96.55
PLN03209	576	translocon at the inner envelope of chloroplast su	96.55
PRK06196	315	oxidoreductase; Provisional	96.55
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.55
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.54
PRK11207	197	tellurite resistance protein TehB; Provisional	96.53
PRK05867	253	short chain dehydrogenase; Provisional	96.52
PRK05866	293	short chain dehydrogenase; Provisional	96.51
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.5
PRK06841	255	short chain dehydrogenase; Provisional	96.48
PRK07890	258	short chain dehydrogenase; Provisional	96.47
PRK07832	272	short chain dehydrogenase; Provisional	96.46
PRK09291	257	short chain dehydrogenase; Provisional	96.45
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.44
PRK07478	254	short chain dehydrogenase; Provisional	96.41
PRK12828	239	short chain dehydrogenase; Provisional	96.41
PRK06484	520	short chain dehydrogenase; Validated	96.41
PRK04457	262	spermidine synthase; Provisional	96.41
PRK07326	237	short chain dehydrogenase; Provisional	96.41
PRK09186	256	flagellin modification protein A; Provisional	96.39
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.38
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	96.37
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.36
PRK05884	223	short chain dehydrogenase; Provisional	96.34
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.34
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.33
PRK05854	313	short chain dehydrogenase; Provisional	96.32
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.32
PRK06484	520	short chain dehydrogenase; Validated	96.29
PRK06953	222	short chain dehydrogenase; Provisional	96.29
PRK05717	255	oxidoreductase; Validated	96.29
PRK08618	325	ornithine cyclodeaminase; Validated	96.28
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.27
PRK06125	259	short chain dehydrogenase; Provisional	96.27
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.25
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.25
PRK07677	252	short chain dehydrogenase; Provisional	96.23
PLN02253	280	xanthoxin dehydrogenase	96.19
PRK00536	262	speE spermidine synthase; Provisional	96.19
PRK05876	275	short chain dehydrogenase; Provisional	96.19
PRK08703	239	short chain dehydrogenase; Provisional	96.18
PRK09242	257	tropinone reductase; Provisional	96.17
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.15
PRK07024	257	short chain dehydrogenase; Provisional	96.14
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.13
PRK08267	260	short chain dehydrogenase; Provisional	96.12
PRK06194	287	hypothetical protein; Provisional	96.12
PLN02244	340	tocopherol O-methyltransferase	96.12
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.11
PRK07774	250	short chain dehydrogenase; Provisional	96.09
PRK07067	257	sorbitol dehydrogenase; Provisional	96.07
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.07
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.07
PRK08643	256	acetoin reductase; Validated	96.05
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.05
PRK06482	276	short chain dehydrogenase; Provisional	96.05
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	96.04
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.04
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.04
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.02
PRK06138	252	short chain dehydrogenase; Provisional	96.02
PRK08263	275	short chain dehydrogenase; Provisional	96.01
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.01
PRK07904	253	short chain dehydrogenase; Provisional	95.99
PRK10538	248	malonic semialdehyde reductase; Provisional	95.99
PRK06128	300	oxidoreductase; Provisional	95.99
PRK08862	227	short chain dehydrogenase; Provisional	95.98
PRK07402	196	precorrin-6B methylase; Provisional	95.96
PRK08589	272	short chain dehydrogenase; Validated	95.96
PRK06483	236	dihydromonapterin reductase; Provisional	95.95
PRK06181	263	short chain dehydrogenase; Provisional	95.95
PRK09072	263	short chain dehydrogenase; Provisional	95.95
PRK13256	226	thiopurine S-methyltransferase; Reviewed	95.94
PRK07035	252	short chain dehydrogenase; Provisional	95.94
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.93
PRK06197	306	short chain dehydrogenase; Provisional	95.93
PRK06198	260	short chain dehydrogenase; Provisional	95.92
PRK06914	280	short chain dehydrogenase; Provisional	95.9
PRK05875	276	short chain dehydrogenase; Provisional	95.9
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.89
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.88
PRK06172	253	short chain dehydrogenase; Provisional	95.88
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	95.87
PRK08251	248	short chain dehydrogenase; Provisional	95.87
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.87
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	95.87
PRK01581	374	speE spermidine synthase; Validated	95.87
PRK07074	257	short chain dehydrogenase; Provisional	95.85
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.84
PRK06179	270	short chain dehydrogenase; Provisional	95.83
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	95.81
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.78
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.78
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.77
PRK07454	241	short chain dehydrogenase; Provisional	95.77
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.73
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.72
PRK06720	169	hypothetical protein; Provisional	95.69
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	95.67
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.65
KOG0725	270	consensus Reductases with broad range of substrate	95.62
PLN03075	296	nicotianamine synthase; Provisional	95.59
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	95.59
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	95.58
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.57
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.56
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	95.56
PRK08628	258	short chain dehydrogenase; Provisional	95.56
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	95.56
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	95.55
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	95.53
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	95.52
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.51
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	95.5
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	95.5
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	95.49
PRK08317	241	hypothetical protein; Provisional	95.48
PRK14903	431	16S rRNA methyltransferase B; Provisional	95.48
PRK06114	254	short chain dehydrogenase; Provisional	95.47
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	95.43
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.37
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.37
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	95.36
PRK08226	263	short chain dehydrogenase; Provisional	95.36
PRK07985	294	oxidoreductase; Provisional	95.35
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	95.34
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	95.28
PRK07856	252	short chain dehydrogenase; Provisional	95.27
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	95.25
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.24
PRK12937	245	short chain dehydrogenase; Provisional	95.23
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.22
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.21
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.2
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.19
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	95.19
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	95.19
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.18
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	95.15
PRK07791	286	short chain dehydrogenase; Provisional	95.15
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.15
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.13
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.13
PRK07775	274	short chain dehydrogenase; Provisional	95.12
PRK07577	234	short chain dehydrogenase; Provisional	95.11
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	95.1
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.1
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	95.1
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.09
PRK12367	245	short chain dehydrogenase; Provisional	95.08
PRK07574	385	formate dehydrogenase; Provisional	95.08
PRK13243	333	glyoxylate reductase; Reviewed	95.05
PRK06398	258	aldose dehydrogenase; Validated	95.05
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	95.01
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.01
PRK06940	275	short chain dehydrogenase; Provisional	95.0
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	95.0
PLN03139	386	formate dehydrogenase; Provisional	94.99
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	94.97
PLN02823	336	spermine synthase	94.97
PRK10901	427	16S rRNA methyltransferase B; Provisional	94.97
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	94.95
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	94.94
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	94.94
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.93
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	94.91
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	94.91
PRK14904	445	16S rRNA methyltransferase B; Provisional	94.9
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.89
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	94.88
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.87
KOG1252	362	consensus Cystathionine beta-synthase and related	94.87
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	94.87
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	94.85
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	94.84
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.84
PRK08264	238	short chain dehydrogenase; Validated	94.82
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	94.82
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	94.82
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	94.78
PRK14967	223	putative methyltransferase; Provisional	94.77
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	94.77
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	94.77
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	94.77
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.76
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	94.74
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.74
PRK05650	270	short chain dehydrogenase; Provisional	94.73
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	94.71
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	94.7
PRK14968	188	putative methyltransferase; Provisional	94.67
PRK06101	240	short chain dehydrogenase; Provisional	94.67
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	94.67
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	94.65
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.64
PRK06141	314	ornithine cyclodeaminase; Validated	94.64
PRK10258	251	biotin biosynthesis protein BioC; Provisional	94.63
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	94.62
CHL00194	317	ycf39 Ycf39; Provisional	94.59
PRK07340	304	ornithine cyclodeaminase; Validated	94.57
PRK14902	444	16S rRNA methyltransferase B; Provisional	94.56
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	94.56
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.55
PRK08303	305	short chain dehydrogenase; Provisional	94.54
PRK12743	256	oxidoreductase; Provisional	94.52
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	94.52
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.52
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	94.51
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.47
PLN00203	519	glutamyl-tRNA reductase	94.47
PRK14901	434	16S rRNA methyltransferase B; Provisional	94.46
PRK09135	249	pteridine reductase; Provisional	94.44
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	94.43
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.43
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	94.42
PLN02928	347	oxidoreductase family protein	94.41
PRK12335	287	tellurite resistance protein TehB; Provisional	94.41
PRK06523	260	short chain dehydrogenase; Provisional	94.39
PRK12938	246	acetyacetyl-CoA reductase; Provisional	94.35
PRK07069	251	short chain dehydrogenase; Validated	94.34
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	94.33
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	94.33
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	94.32
PRK08278	273	short chain dehydrogenase; Provisional	94.3
PRK13403	335	ketol-acid reductoisomerase; Provisional	94.29
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	94.28
PRK09134	258	short chain dehydrogenase; Provisional	94.26
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.24
TIGR02415	254	23BDH acetoin reductases. One member of this famil	94.21
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	94.18
PRK05855	582	short chain dehydrogenase; Validated	94.15
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.12
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	94.12
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	94.09
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	94.09
PRK07201	657	short chain dehydrogenase; Provisional	94.08
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	94.06
PRK08219	227	short chain dehydrogenase; Provisional	94.02
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	94.01
PRK07417	279	arogenate dehydrogenase; Reviewed	93.99
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	93.97
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.96
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	93.93
PRK07102	243	short chain dehydrogenase; Provisional	93.89
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.88
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	93.83
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	93.79
PLN00015	308	protochlorophyllide reductase	93.78
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	93.76
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.74
PLN02233	261	ubiquinone biosynthesis methyltransferase	93.71
PLN02336	475	phosphoethanolamine N-methyltransferase	93.71
PRK08936	261	glucose-1-dehydrogenase; Provisional	93.7
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	93.7
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	93.67
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.67
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	93.66
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	93.63
PRK03612	521	spermidine synthase; Provisional	93.63
PRK05599	246	hypothetical protein; Provisional	93.6
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	93.58
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	93.53
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.52
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	93.47
PRK06701	290	short chain dehydrogenase; Provisional	93.47
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.46
PLN02490	340	MPBQ/MSBQ methyltransferase	93.46
PRK04266	226	fibrillarin; Provisional	93.45
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	93.45
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.45
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.45
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	93.4
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.4
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.38
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	93.38
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.35
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	93.29
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.29
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	93.27
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.27
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	93.24
PRK03659	601	glutathione-regulated potassium-efflux system prot	93.23
PRK10669	558	putative cation:proton antiport protein; Provision	93.19
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	93.15
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	93.14
PLN02896	353	cinnamyl-alcohol dehydrogenase	93.13
COG2521	287	Predicted archaeal methyltransferase [General func	93.12
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	93.05
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	93.04
PRK12746	254	short chain dehydrogenase; Provisional	93.04
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	93.03
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	93.02

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=6.4e-34  Score=205.99  Aligned_cols=204  Identities=20%  Similarity=0.272  Sum_probs=176.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +..+|++...++|||.-+++..  ++|++||+|   |+||++++|++|..|++++++..+.+|++.++ +.|+++.++++
T Consensus       121 ~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~ak-enG~~h~I~y~  199 (336)
T KOG1197|consen  121 LKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAK-ENGAEHPIDYS  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHH-hcCCcceeecc
Confidence            4588999999999999999988  999999999   99999999999999999999999999999999 99999999999


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      .+ ++.+++.+++++ |+|+++|.+|.+++..++++|++.|.+|.+|..++..     .++++..+-.+++.+.......
T Consensus       200 ~e-D~v~~V~kiTngKGVd~vyDsvG~dt~~~sl~~Lk~~G~mVSfG~asgl~-----~p~~l~~ls~k~l~lvrpsl~g  273 (336)
T KOG1197|consen  200 TE-DYVDEVKKITNGKGVDAVYDSVGKDTFAKSLAALKPMGKMVSFGNASGLI-----DPIPLNQLSPKALQLVRPSLLG  273 (336)
T ss_pred             ch-hHHHHHHhccCCCCceeeeccccchhhHHHHHHhccCceEEEeccccCCC-----CCeehhhcChhhhhhccHhhhc
Confidence            98 999999999988 9999999999999999999999999999999877642     2334444444555443333222


Q ss_pred             c---cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecCC
Q 043295          167 H---FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE  223 (223)
Q Consensus       167 ~---~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~~  223 (223)
                      +   +........+++.++.+|.+++.+.++|||+++.+|+..++++...||+++.+.+|
T Consensus       274 Yi~g~~el~~~v~rl~alvnsg~lk~~I~~~ypls~vadA~~diesrktvGkvlLlp~~~  333 (336)
T KOG1197|consen  274 YIDGEVELVSYVARLFALVNSGHLKIHIDHVYPLSKVADAHADIESRKTVGKVLLLPGPE  333 (336)
T ss_pred             ccCCHHHHHHHHHHHHHHhhcCccceeeeeecchHHHHHHHHHHHhhhccceEEEeCCcc
Confidence            2   33344466778888899999999999999999999999999999999999998765

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=100.00  E-value=7.4e-33  Score=205.48  Aligned_cols=215  Identities=41%  Similarity=0.691  Sum_probs=192.5

Q ss_pred             CCcchhhhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC
Q 043295            7 ESHRSCYVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD   81 (223)
Q Consensus         7 ~~~~~~~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~   81 (223)
                      ++..+++.....+.+++.|||.+|.+++  ++|++|+|-   |+||..+.|+||..|++|++++.+++|..++++++|.|
T Consensus       119 ~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD  198 (340)
T COG2130         119 PSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFD  198 (340)
T ss_pred             CCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCc
Confidence            4455667788999999999999999999  899999999   99999999999999999999999999999999669999


Q ss_pred             eeeecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccC-CCCchHHHHhhcceEE
Q 043295           82 DAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKR-AVPNMIDIVYKRIKIQ  160 (223)
Q Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~  160 (223)
                      .++||+.+ ++.+.+.+..++|+|+.||++|++.++..+..|+..+|++.||..+.++....+ .+.....++.+.+++.
T Consensus       199 ~~idyk~~-d~~~~L~~a~P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~  277 (340)
T COG2130         199 AGIDYKAE-DFAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQ  277 (340)
T ss_pred             eeeecCcc-cHHHHHHHHCCCCeEEEEEcCCchHHHHHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeE
Confidence            99999998 999999999999999999999999999999999999999999998888764322 3334456666799999


Q ss_pred             eeec-cCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          161 GFLS-TDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       161 g~~~-~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                      |+.. ..+.....+..+++..++.+|+|+-..+.+-+||++++||.-|.+++.+||+|+++.+
T Consensus       278 Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~eti~dGlEnaP~Af~gLl~G~N~GK~vvKv~~  340 (340)
T COG2130         278 GFIVASDYDQRFPEALRELGGWVKEGKIQYRETIVDGLENAPEAFIGLLSGKNFGKLVVKVAD  340 (340)
T ss_pred             EEEechhhhhhhHHHHHHHHHHHHcCceeeEeeehhhhhccHHHHHHHhcCCccceEEEEecC
Confidence            9998 4455666799999999999999998887666999999999999999999999999863

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=3.8e-32  Score=212.90  Aligned_cols=207  Identities=27%  Similarity=0.441  Sum_probs=176.4

Q ss_pred             CCcchhhhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC
Q 043295            7 ESHRSCYVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD   81 (223)
Q Consensus         7 ~~~~~~~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~   81 (223)
                      +.+++ +++||++++.++|||++|....  ++|++|||+   |+||.+++|+||.+|+++++++.++++.++++ ++|++
T Consensus       112 P~~ls-~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~-~lGAd  189 (326)
T COG0604         112 PDGLS-FEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK-ELGAD  189 (326)
T ss_pred             CCCCC-HHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHH-hcCCC
Confidence            34555 5699999999999999999966  889999999   99999999999999987777777888888888 99999


Q ss_pred             eeeecCCcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEE
Q 043295           82 DAFNYKEETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQ  160 (223)
Q Consensus        82 ~~~~~~~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (223)
                      ++++|.+. ++.+++++.+++ ++|+|+|++|++.+..++.+|+++|+++.+|..++ .   ....++...++.+.....
T Consensus       190 ~vi~y~~~-~~~~~v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~~g-~---~~~~~~~~~~~~~~~~~~  264 (326)
T COG0604         190 HVINYREE-DFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGALSG-G---PPVPLNLLPLLGKRLTLR  264 (326)
T ss_pred             EEEcCCcc-cHHHHHHHHcCCCCceEEEECCCHHHHHHHHHHhccCCEEEEEecCCC-C---CccccCHHHHhhccEEEE
Confidence            99999998 899999999999 99999999999999999999999999999998774 1   233455777888888888


Q ss_pred             eeeccCc-cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHc-CCCcCcEEEEe
Q 043295          161 GFLSTDH-FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFR-GDNIGKKFVRI  220 (223)
Q Consensus       161 g~~~~~~-~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~-~~~~gk~v~~~  220 (223)
                      |+..... +....+.+.++.+++.+|.++|.+..+|||++..++...... ++..||+|+++
T Consensus       265 g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~e~~~a~a~~~~~~~~~GKvvl~~  326 (326)
T COG0604         265 GVTLGSRDPEALAEALAELFDLLASGKLKPVIDRVYPLAEAPAAAAHLLLERRTTGKVVLKV  326 (326)
T ss_pred             EecceecchHHHHHHHHHHHHHHHcCCCcceeccEechhhhHHHHHHHHcccCCcceEEEeC
Confidence            8777642 345567888999999999999999999999995444443333 58899999974

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-31  Score=213.00  Aligned_cols=215  Identities=52%  Similarity=0.940  Sum_probs=177.6

Q ss_pred             cchhhhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee
Q 043295            9 HRSCYVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA   83 (223)
Q Consensus         9 ~~~~~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~   83 (223)
                      ..+...++|++++++.|||+++....  ++|++|||+   |++|++++|+|+..|++|+++++++++.+.+++++|++.+
T Consensus       129 ~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~v  208 (348)
T PLN03154        129 DIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEA  208 (348)
T ss_pred             CCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEE
Confidence            34433368899999999999997765  899999999   8899999999999999999999999999988646999999


Q ss_pred             eecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeee
Q 043295           84 FNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFL  163 (223)
Q Consensus        84 ~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  163 (223)
                      +|+.+.+++.+.+++.+++++|++|||+|+..+..++++++++|+++.+|..............+...++.+++++.|+.
T Consensus       209 i~~~~~~~~~~~i~~~~~~gvD~v~d~vG~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~  288 (348)
T PLN03154        209 FNYKEEPDLDAALKRYFPEGIDIYFDNVGGDMLDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFL  288 (348)
T ss_pred             EECCCcccHHHHHHHHCCCCcEEEEECCCHHHHHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEE
Confidence            99875226778888877668999999999989999999999999999999765321100001224566778899999987


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecCC
Q 043295          164 STDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE  223 (223)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~~  223 (223)
                      ...+.....+.++++++++++|++++.+..+++|+++.+||+.+.+++..||+|+++.+|
T Consensus       289 ~~~~~~~~~~~~~~~~~l~~~G~l~~~~~~~~~L~~~~~A~~~l~~g~~~GKvVl~~~~~  348 (348)
T PLN03154        289 QSDYLHLFPQFLENVSRYYKQGKIVYIEDMSEGLESAPAALVGLFSGKNVGKQVIRVAKE  348 (348)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCccCceecccCHHHHHHHHHHHHcCCCCceEEEEecCC
Confidence            655433345678889999999999998888899999999999999999999999999765

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.5e-32  Score=211.00  Aligned_cols=194  Identities=25%  Similarity=0.334  Sum_probs=176.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++.||++.|++.|.|++|++.. +||++|+|.  |++|++++|+|+.+|++|++++++++|.+.++ ++|++++++.++.
T Consensus       142 ~~~aApllCaGiT~y~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~-~lGAd~~i~~~~~  220 (339)
T COG1064         142 LAEAAPLLCAGITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK-KLGADHVINSSDS  220 (339)
T ss_pred             hhhhhhhhcCeeeEeeehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH-HhCCcEEEEcCCc
Confidence            5689999999999999999988 999999999  99999999999999999999999999999999 9999999998755


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccc
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFD  169 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  169 (223)
                       +..+.+++.    +|+++|+++...+..+++.|+++|+++.+|.+..    ......+...++.+++++.|+....   
T Consensus       221 -~~~~~~~~~----~d~ii~tv~~~~~~~~l~~l~~~G~~v~vG~~~~----~~~~~~~~~~li~~~~~i~GS~~g~---  288 (339)
T COG1064         221 -DALEAVKEI----ADAIIDTVGPATLEPSLKALRRGGTLVLVGLPGG----GPIPLLPAFLLILKEISIVGSLVGT---  288 (339)
T ss_pred             -hhhHHhHhh----CcEEEECCChhhHHHHHHHHhcCCEEEEECCCCC----cccCCCCHHHhhhcCeEEEEEecCC---
Confidence             777777664    9999999997789999999999999999999851    1233567788899999999999998   


Q ss_pred             hHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          170 LHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       170 ~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                        +..+++++++..+|.++|.+...++++++++|+++|.+++..|++|+++.
T Consensus       289 --~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~~  338 (339)
T COG1064         289 --RADLEEALDFAAEGKIKPEILETIPLDEINEAYERMEKGKVRGRAVIDMS  338 (339)
T ss_pred             --HHHHHHHHHHHHhCCceeeEEeeECHHHHHHHHHHHHcCCeeeEEEecCC
Confidence              78899999999999999999778999999999999999999999999864

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.97  E-value=2.3e-29  Score=186.34  Aligned_cols=219  Identities=53%  Similarity=0.933  Sum_probs=198.0

Q ss_pred             cCCCcchhhhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhC
Q 043295            5 NEESHRSCYVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG   79 (223)
Q Consensus         5 ~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g   79 (223)
                      +.+...+++.-...+.++++|||-++++++  ++|++|+|-   |.+|+++.|+|+.+|++|++.+.|++|.+.+++++|
T Consensus       120 ~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G  199 (343)
T KOG1196|consen  120 QHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKTKFG  199 (343)
T ss_pred             CCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChhhhhhhHhccC
Confidence            334567778888999999999999999999  889999999   999999999999999999999999999999998899


Q ss_pred             CCeeeecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceE
Q 043295           80 FDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKI  159 (223)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (223)
                      .+..+||.++.+..+.+++..+.|+|+-||.+|+..++..+..|+..|+++.+|..+.++.+.+..--+....+.+++++
T Consensus       200 ~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~i  279 (343)
T KOG1196|consen  200 FDDAFNYKEESDLSAALKRCFPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRI  279 (343)
T ss_pred             CccceeccCccCHHHHHHHhCCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEe
Confidence            99999999876888889998888999999999999999999999999999999998888776655555667888999999


Q ss_pred             EeeeccCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecCC
Q 043295          160 QGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE  223 (223)
Q Consensus       160 ~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~~  223 (223)
                      .|+...++.+.+.+.++.+..++++|+|+-.-+..-.|+..++||.-|.+|+..||.++.+..|
T Consensus       280 qgflv~d~~d~~~k~ld~l~~~ikegKI~y~edi~~Glen~P~A~vglf~GkNvGKqiv~va~E  343 (343)
T KOG1196|consen  280 QGFLVSDYLDKYPKFLDFLLPYIKEGKITYVEDIADGLENGPSALVGLFHGKNVGKQLVKVARE  343 (343)
T ss_pred             eeEEeechhhhhHHHHHHHHHHHhcCceEEehhHHHHHhccHHHHHHHhccCcccceEEEeecC
Confidence            9999888877788999999999999999877665558999999999999999999999998754

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.97  E-value=2.2e-28  Score=194.25  Aligned_cols=205  Identities=58%  Similarity=1.016  Sum_probs=169.6

Q ss_pred             hhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh-hCCCeeeecCC
Q 043295           15 FANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK-LGFDDAFNYKE   88 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~-~g~~~~~~~~~   88 (223)
                      +++++++++.|||+++.+..  ++|++|+|+   |++|.+++|+|+..|++|+++++++++.+.++ + +|+++++++.+
T Consensus       128 ~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~-~~lGa~~vi~~~~  206 (338)
T cd08295         128 YLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLK-NKLGFDDAFNYKE  206 (338)
T ss_pred             HHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HhcCCceeEEcCC
Confidence            68999999999999997765  999999999   89999999999999999999999999999999 6 99999999764


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCcc
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  168 (223)
                      ..++.+.+++.+++++|++||++|+..+..++++++++|+++.+|..............+...+..+++++.++......
T Consensus       207 ~~~~~~~i~~~~~~gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  286 (338)
T cd08295         207 EPDLDAALKRYFPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYL  286 (338)
T ss_pred             cccHHHHHHHhCCCCcEEEEECCCHHHHHHHHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhH
Confidence            22677888887766999999999998899999999999999999865432110000112345666778888887665543


Q ss_pred             chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          169 DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ....+.++++++++.+|.+++.+...++++++.+|++.+.+++..||+|+++
T Consensus       287 ~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~GkvVl~~  338 (338)
T cd08295         287 HRYPEFLEEMSGYIKEGKLKYVEDIADGLESAPEAFVGLFTGSNIGKQVVKV  338 (338)
T ss_pred             HHHHHHHHHHHHHHHCCCeEceeecccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence            3345678889999999999988777799999999999999999999999874

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.97  E-value=4.4e-28  Score=191.51  Aligned_cols=206  Identities=44%  Similarity=0.750  Sum_probs=166.3

Q ss_pred             hhhh-hccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeec
Q 043295           13 YVFA-NGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNY   86 (223)
Q Consensus        13 ~~~a-a~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~   86 (223)
                      ++++ +++++++.|||+++.+..  ++|++|||+   |++|.+++|+|+..|++|+++++++++.+.++ ++|++.++++
T Consensus       112 ~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~-~lGa~~vi~~  190 (325)
T TIGR02825       112 LSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK-KLGFDVAFNY  190 (325)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEec
Confidence            3455 689999999999987766  899999999   89999999999999999999999999999998 8999999998


Q ss_pred             CCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEccccccccc-ccCCCCchHHHHhhcceEEeeecc
Q 043295           87 KEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADA-SKRAVPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        87 ~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~  165 (223)
                      ++.+.+.+.++..+++++|++|||+|++.+..++++++++|+++.+|........ ..........++.+++++.++...
T Consensus       191 ~~~~~~~~~~~~~~~~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  270 (325)
T TIGR02825       191 KTVKSLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVN  270 (325)
T ss_pred             cccccHHHHHHHhCCCCeEEEEECCCHHHHHHHHHHhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEeh
Confidence            7632566666666655899999999998889999999999999999865432100 001111234456677888887654


Q ss_pred             Cc-cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          166 DH-FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       166 ~~-~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      .+ .....+.++++++++++|.+++.+..+++++++.+|++.+.+++..||+|++
T Consensus       271 ~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gkvVv~  325 (325)
T TIGR02825       271 RWQGEVRQKALKELLKWVLEGKIQYKEYVIEGFENMPAAFMGMLKGENLGKTIVK  325 (325)
T ss_pred             hhhhhhhHHHHHHHHHHHHCCCcccceeccccHHHHHHHHHHHhcCCCCCeEEeC
Confidence            33 2233567888999999999998877788999999999999999999999974

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.96  E-value=8.6e-28  Score=190.13  Aligned_cols=203  Identities=43%  Similarity=0.760  Sum_probs=168.5

Q ss_pred             hhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           16 ANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        16 aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      +++++++++|||+++....  ++|++|||+   |++|.+++|+|+..|++|+++++++++.+.++ ++|++.++++++. 
T Consensus       121 ~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~-~~Ga~~vi~~~~~-  198 (329)
T cd08294         121 LGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLK-ELGFDAVFNYKTV-  198 (329)
T ss_pred             HHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEeCCCc-
Confidence            4578899999999997666  899999999   89999999999999999999999999999999 8999999999877 


Q ss_pred             cHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccC-CCCchHHHHhhcceEEeeeccCccc
Q 043295           91 DLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKR-AVPNMIDIVYKRIKIQGFLSTDHFD  169 (223)
Q Consensus        91 ~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~  169 (223)
                      ++.+.+++.+++++|++||++|++.+..++++++++|+++.+|........... .......+..+++++.++....+..
T Consensus       199 ~~~~~v~~~~~~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  278 (329)
T cd08294         199 SLEEALKEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQD  278 (329)
T ss_pred             cHHHHHHHHCCCCcEEEEECCCHHHHHHHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHH
Confidence            888888888767899999999998899999999999999999864332110000 1223445677888888876544323


Q ss_pred             hHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          170 LHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       170 ~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ...+.++++++++++|.+++....+++++++.+|++.+.+++..||+|+++
T Consensus       279 ~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~  329 (329)
T cd08294         279 RWPEALKQLLKWIKEGKLKYREHVTEGFENMPQAFIGMLKGENTGKAIVKV  329 (329)
T ss_pred             HHHHHHHHHHHHHHCCCCcCCcccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            345678889999999999987667789999999999999999999999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.96  E-value=7.6e-28  Score=188.90  Aligned_cols=203  Identities=25%  Similarity=0.379  Sum_probs=161.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh--------hCCCEEEEE---CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--------QKGEKVFVS---GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGF   80 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--------~~g~~vlI~---g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~   80 (223)
                      ++++|++|.++.|||+++....        ++|++|||+   |+||++++|+|+.+|+ +|++++ ++++.++++ ++|+
T Consensus       126 ~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~-s~e~~~l~k-~lGA  203 (347)
T KOG1198|consen  126 FEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTAC-SKEKLELVK-KLGA  203 (347)
T ss_pred             hhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEc-ccchHHHHH-HcCC
Confidence            5699999999999999998754        788999999   8999999999999995 555555 888999999 9999


Q ss_pred             CeeeecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEE
Q 043295           81 DDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQ  160 (223)
Q Consensus        81 ~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (223)
                      ++++||++. ++.+.+.+.++++||+||||+|+.+......++..+|+...++..++...+.... ..+. . .+.+++.
T Consensus       204 d~vvdy~~~-~~~e~~kk~~~~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~-~~~~-~-~~~~~~~  279 (347)
T KOG1198|consen  204 DEVVDYKDE-NVVELIKKYTGKGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVGDELANYKLD-DLWQ-S-ANGIKLY  279 (347)
T ss_pred             cEeecCCCH-HHHHHHHhhcCCCccEEEECCCCCccccchhhhccCCceEEEEeccccccccccc-cchh-h-hhhhhhe
Confidence            999999998 9999999998449999999999988888999999888766666555432211111 1111 1 2221111


Q ss_pred             e--eeccCc----cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          161 G--FLSTDH----FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       161 g--~~~~~~----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      .  .....+    .....+.++.+.+++++|+++|.+.+.||++++.+||+.+.++...||+|+.+.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~gkikp~i~~~~p~~~~~ea~~~~~~~~~~GK~vl~~~  346 (347)
T KOG1198|consen  280 SLGLKGVNYRWLYFVPSAEYLKALVELIEKGKIKPVIDSVYPFSQAKEAFEKLEKSHATGKVVLEKD  346 (347)
T ss_pred             eeeeeccceeeeeecCCHHHHHHHHHHHHcCcccCCcceeeeHHHHHHHHHHHhhcCCcceEEEEec
Confidence            1  111111    344578899999999999999999999999999999999999999999999875

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=3.2e-27  Score=176.84  Aligned_cols=201  Identities=19%  Similarity=0.216  Sum_probs=173.3

Q ss_pred             CcchhhhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee
Q 043295            8 SHRSCYVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF   84 (223)
Q Consensus         8 ~~~~~~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~   84 (223)
                      .+.++ +.||++.|++.|+|.+|.+.. .||+++-|.  |++|.+++|+||++|.+|++++++.++.+.+-+.||++..+
T Consensus       153 ~~~pl-~~aAPlLCaGITvYspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv  231 (360)
T KOG0023|consen  153 ENLPL-ASAAPLLCAGITVYSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFV  231 (360)
T ss_pred             CCCCh-hhccchhhcceEEeehhHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeE
Confidence            34443 399999999999999999999 999999999  88999999999999999999999985444444389999888


Q ss_pred             ecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           85 NYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        85 ~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      +..++.++.+.+...+++++|-+.+. ..-.+..++.+++.+|++|.+|.+..      ...++..++..+..++.|+..
T Consensus       232 ~~~~d~d~~~~~~~~~dg~~~~v~~~-a~~~~~~~~~~lk~~Gt~V~vg~p~~------~~~~~~~~lil~~~~I~GS~v  304 (360)
T KOG0023|consen  232 DSTEDPDIMKAIMKTTDGGIDTVSNL-AEHALEPLLGLLKVNGTLVLVGLPEK------PLKLDTFPLILGRKSIKGSIV  304 (360)
T ss_pred             EecCCHHHHHHHHHhhcCcceeeeec-cccchHHHHHHhhcCCEEEEEeCcCC------cccccchhhhcccEEEEeecc
Confidence            88843389999999888777777766 33468889999999999999998764      346677888999999999999


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                      ..     +...+++++++.++.+++++. ..+++++++||++|.++...+|.|++++.
T Consensus       305 G~-----~ket~E~Ldf~a~~~ik~~IE-~v~~~~v~~a~erm~kgdV~yRfVvD~s~  356 (360)
T KOG0023|consen  305 GS-----RKETQEALDFVARGLIKSPIE-LVKLSEVNEAYERMEKGDVRYRFVVDVSK  356 (360)
T ss_pred             cc-----HHHHHHHHHHHHcCCCcCceE-EEehhHHHHHHHHHHhcCeeEEEEEEccc
Confidence            98     788999999999999999884 57999999999999999999999999864

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.95  E-value=1.9e-26  Score=183.19  Aligned_cols=192  Identities=21%  Similarity=0.247  Sum_probs=163.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++++++++++.|||+++.... ++|++|+|+  |++|++++|+|+..|++ |+++++++++++.++ ++|++.++++++
T Consensus       139 ~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~-~~ga~~~i~~~~  217 (339)
T cd08239         139 FADGALLLCGIGTAYHALRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAK-ALGADFVINSGQ  217 (339)
T ss_pred             HHHhhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEEcCCc
Confidence            4578889999999999997766 889999999  99999999999999998 999999999999998 999999999887


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCc-hHHHHhhcceEEeeecc
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPN-MIDIVYKRIKIQGFLST  165 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~  165 (223)
                      . + .+.+++.+++ ++|++|||+|+. .+..++++++++|+++.+|.....       ..+ ...++.+++++.|+...
T Consensus       218 ~-~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-------~~~~~~~~~~~~~~i~g~~~~  288 (339)
T cd08239         218 D-D-VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGEL-------TIEVSNDLIRKQRTLIGSWYF  288 (339)
T ss_pred             c-h-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCCc-------ccCcHHHHHhCCCEEEEEecC
Confidence            6 5 7778887777 999999999985 457889999999999999975431       122 24567789999998765


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          166 DHFDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      .     .+.++++++++.+|.+++  .++++++++++.+||+.+.++. .||+|++|
T Consensus       289 ~-----~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~-~gKvvi~~  339 (339)
T cd08239         289 S-----VPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGE-SGKVVFVF  339 (339)
T ss_pred             C-----HHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCC-ceEEEEeC
Confidence            5     467888999999999875  5778899999999999998875 69999975

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.95  E-value=1.7e-26  Score=185.53  Aligned_cols=198  Identities=18%  Similarity=0.199  Sum_probs=167.8

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++++.+++++.|||+++....  +++++|+|+  |++|++++|+|+..|+ +|++++.++++++.++ ++|++.++++.
T Consensus       166 ~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~-~~Ga~~~i~~~  244 (371)
T cd08281         166 LEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR-ELGATATVNAG  244 (371)
T ss_pred             hHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH-HcCCceEeCCC
Confidence            4578888889999999986655  899999999  9999999999999999 6999999999999998 99999999988


Q ss_pred             CcccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      +. ++.+.+++.+++++|++|||+|+ ..+..++++++++|+++.+|.....    ....++...++.+++++.|+....
T Consensus       245 ~~-~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~~~i~g~~~~~  319 (371)
T cd08281         245 DP-NAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPE----ARLSVPALSLVAEERTLKGSYMGS  319 (371)
T ss_pred             ch-hHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCC----ceeeecHHHHhhcCCEEEEEecCC
Confidence            76 78888888877789999999996 6889999999999999999975421    122456667888999999987654


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          167 HFDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                      +.  .++.+.++++++.+|.+++  .++.+|+|+++.+||+.+.+++..+|+|+
T Consensus       320 ~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi~  371 (371)
T cd08281         320 CV--PRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVIL  371 (371)
T ss_pred             CC--hHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence            31  1356788899999999975  46788999999999999999998888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.95  E-value=3.8e-26  Score=181.68  Aligned_cols=190  Identities=18%  Similarity=0.189  Sum_probs=158.6

Q ss_pred             hhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           15 FANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      +.+++..++.|||+++.+.. .++++|+|+  |++|++++|+|+..|+ +|+++++++++++.++ ++|++.++|+++. 
T Consensus       147 ~~aa~~~~~~~a~~al~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~~-  224 (343)
T PRK09880        147 KVMAFAEPLAVAIHAAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR-EMGADKLVNPQND-  224 (343)
T ss_pred             HHHHhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH-HcCCcEEecCCcc-
Confidence            34567788899999998877 789999999  9999999999999999 6999999999999999 8999999998775 


Q ss_pred             cHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccc
Q 043295           91 DLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFD  169 (223)
Q Consensus        91 ~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  169 (223)
                      ++.+.. +. .+++|++|||+|+ ..+..++.+++++|+++.+|....      ...+++..++.+++++.|+...    
T Consensus       225 ~~~~~~-~~-~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~k~~~i~g~~~~----  292 (343)
T PRK09880        225 DLDHYK-AE-KGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGA------PPEFPMMTLIVKEISLKGSFRF----  292 (343)
T ss_pred             cHHHHh-cc-CCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC------CCccCHHHHHhCCcEEEEEeec----
Confidence            554322 22 2369999999997 578899999999999999996432      2245667778899999887643    


Q ss_pred             hHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          170 LHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       170 ~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                        .+.++++++++++|.+++  .++++|+|+++++|++.+.++...||+++.+
T Consensus       293 --~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  343 (343)
T PRK09880        293 --TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF  343 (343)
T ss_pred             --cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence              245788999999999986  4678899999999999999888789999864

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.95  E-value=9e-26  Score=179.75  Aligned_cols=204  Identities=35%  Similarity=0.615  Sum_probs=158.9

Q ss_pred             hhccccchhhHHHHHHHHh--hCC--CEEEEE---CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           16 ANGAGTSGFTAYVGFYEIS--QKG--EKVFVS---GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        16 aa~l~~~~~ta~~~l~~~~--~~g--~~vlI~---g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++++.++.|||+++.+..  +++  ++|||+   |++|++++|+|+..|+ +|+++++++++.+.+++++|++.++++.
T Consensus       130 ~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~  209 (345)
T cd08293         130 LGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYK  209 (345)
T ss_pred             hhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECC
Confidence            5678889999999997765  655  999999   8999999999999999 8999999999999998349999999988


Q ss_pred             CcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccC-CCCc--hHHH-HhhcceEEeee
Q 043295           88 EETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKR-AVPN--MIDI-VYKRIKIQGFL  163 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~g~~  163 (223)
                      +. ++.+.+++.+++++|++|||+|+..+..++++++++|+++.+|........... ....  ...+ ..++++..++.
T Consensus       210 ~~-~~~~~i~~~~~~gvd~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (345)
T cd08293         210 TD-NVAERLRELCPEGVDVYFDNVGGEISDTVISQMNENSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFL  288 (345)
T ss_pred             CC-CHHHHHHHHCCCCceEEEECCCcHHHHHHHHHhccCCEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEE
Confidence            76 888889888766899999999998889999999999999999854321100000 0111  1111 22344444443


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          164 STDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      .........+.++++++++++|.+++....+++++++.+|++.+.+++..||+|+++
T Consensus       289 ~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~  345 (345)
T cd08293         289 VLNYKDKFEEAIAQLSQWVKEGKLKVKETVYEGLENAGEAFQSMMNGGNIGKQIVKV  345 (345)
T ss_pred             eeccHhHHHHHHHHHHHHHHCCCccceeEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence            222233345678889999999999987666679999999999999998899999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.95  E-value=4.4e-26  Score=180.07  Aligned_cols=200  Identities=20%  Similarity=0.279  Sum_probs=164.7

Q ss_pred             hhhhhccccchhhHHHHHHHHhhCCCEEEEE----CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEISQKGEKVFVS----GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~~~g~~vlI~----g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++++++++.++|||..+.....+++.++|+    |++|++++|+|+..|++|+++++++++.+.++ ++|+++++++.+
T Consensus       119 ~~~aa~~~~~~~ta~~~~~~~~~~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~i~~~~  197 (324)
T cd08291         119 FEQGASSFVNPLTALGMLETAREEGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLK-KIGAEYVLNSSD  197 (324)
T ss_pred             HHHHhhhcccHHHHHHHHHhhccCCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEECCC
Confidence            4477888889999986553332455555554    89999999999999999999999999999999 899999999887


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      . ++.+.+++.+++ ++|++|||+|+......+.+++++|+++.+|......    ...++...++.+++++.++....+
T Consensus       198 ~-~~~~~v~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  272 (324)
T cd08291         198 P-DFLEDLKELIAKLNATIFFDAVGGGLTGQILLAMPYGSTLYVYGYLSGKL----DEPIDPVDLIFKNKSIEGFWLTTW  272 (324)
T ss_pred             c-cHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHhhCCCCEEEEEEecCCCC----cccCCHHHHhhcCcEEEEEEHHHh
Confidence            6 888999988887 9999999999988888999999999999998754321    112445667788999999887654


Q ss_pred             -cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          168 -FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       168 -~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                       .....+.++++++++. |.+++.++.+|+|+++.+||+.+.+++..||++++
T Consensus       273 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~~  324 (324)
T cd08291         273 LQKLGPEVVKKLKKLVK-TELKTTFASRYPLALTLEAIAFYSKNMSTGKKLLI  324 (324)
T ss_pred             hcccCHHHHHHHHHHHh-CccccceeeEEcHHHHHHHHHHHHhCCCCCeEEeC
Confidence             2223567888888888 99999999999999999999999999999999974

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.95  E-value=1.6e-26  Score=174.97  Aligned_cols=198  Identities=22%  Similarity=0.209  Sum_probs=171.2

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++.++.+.|...|.+-+..+..  ++|++|.|.  |++|++++|-|+..|+ ++++++.+++|+++++ +||+++++|..
T Consensus       160 ~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~-~fGAT~~vn~~  238 (366)
T COG1062         160 LEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK-KFGATHFVNPK  238 (366)
T ss_pred             ccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH-hcCCceeecch
Confidence            4588889999999999888877  999999999  9999999999999999 9999999999999999 99999999988


Q ss_pred             CcccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      +..+..+.+.+++++|+|++|||+|+ ..++.++.++.++|+.+.+|.....    ...+.+...+... .+|+|+....
T Consensus       239 ~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~----~~i~~~~~~lv~g-r~~~Gs~~G~  313 (366)
T COG1062         239 EVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAG----QEISTRPFQLVTG-RVWKGSAFGG  313 (366)
T ss_pred             hhhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCC----ceeecChHHeecc-ceEEEEeecC
Confidence            75358999999999999999999997 7899999999999999999987653    2334555666555 8899988876


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      ..  -+.++..+++++.+|+++..  ++..++|++++|||+.|++++.+ |-|+.
T Consensus       314 ~~--p~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~I-R~Vi~  365 (366)
T COG1062         314 AR--PRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSI-RSVIR  365 (366)
T ss_pred             Cc--cccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCcee-eEEec
Confidence            41  25678999999999999755  77789999999999999999987 55543

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.95  E-value=1.3e-25  Score=179.61  Aligned_cols=198  Identities=20%  Similarity=0.242  Sum_probs=165.3

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++++.+++++.|||+++.+..  +++++|||+  |++|++++|+|+..|+ +|+++++++++++.++ ++|++.++++.
T Consensus       151 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~-~~Ga~~~i~~~  229 (358)
T TIGR03451       151 PAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR-EFGATHTVNSS  229 (358)
T ss_pred             hhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcCCceEEcCC
Confidence            4578888889999999887665  899999999  9999999999999999 5999999999999998 99999999988


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeecc
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  165 (223)
                      +. ++.+.+++.+++ ++|++|||+|+ +.+..++.+++++|+++.+|.+...    ....+++..++.++.++.++...
T Consensus       230 ~~-~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~~~i~~~~~~  304 (358)
T TIGR03451       230 GT-DPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPD----MTLELPLLDVFGRGGALKSSWYG  304 (358)
T ss_pred             Cc-CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCC----ceeeccHHHHhhcCCEEEEeecC
Confidence            76 788889888887 89999999996 6789999999999999999975431    11234556777888999887643


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          166 DHFDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      ...  ..+.++++++++.+|.+++  .++.+||++++.+|++.+.+++.. |+++.
T Consensus       305 ~~~--~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~~  357 (358)
T TIGR03451       305 DCL--PERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVL-RSVVE  357 (358)
T ss_pred             CCC--cHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcc-eeEEe
Confidence            211  1456888999999999976  478889999999999999988765 77764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.95  E-value=1.7e-26  Score=195.80  Aligned_cols=205  Identities=20%  Similarity=0.325  Sum_probs=175.8

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhC---CCeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG---FDDAF   84 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g---~~~~~   84 (223)
                      .++|++.|+.+.|||++|...+  ++|++||||   |+||++|+.+|...|++|+.|+.|.+|++++.+.|.   ...+-
T Consensus      1527 leeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~VFTTVGSaEKRefL~~rFPqLqe~~~~ 1606 (2376)
T KOG1202|consen 1527 LEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCTVFTTVGSAEKREFLLKRFPQLQETNFA 1606 (2376)
T ss_pred             hhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCEEEEecCcHHHHHHHHHhchhhhhhccc
Confidence            4589999999999999999888  999999999   999999999999999999999999999999985443   35667


Q ss_pred             ecCCcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeee
Q 043295           85 NYKEETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFL  163 (223)
Q Consensus        85 ~~~~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  163 (223)
                      |+++. +|..-+++-|+| |+|+|+++...+.++.+++||+-+|++..+|...-++     .+......|.++.++.|..
T Consensus      1607 NSRdt-sFEq~vl~~T~GrGVdlVLNSLaeEkLQASiRCLa~~GRFLEIGKfDLSq-----NspLGMavfLkNvsfHGiL 1680 (2376)
T KOG1202|consen 1607 NSRDT-SFEQHVLWHTKGRGVDLVLNSLAEEKLQASIRCLALHGRFLEIGKFDLSQ-----NSPLGMAVFLKNVSFHGIL 1680 (2376)
T ss_pred             ccccc-cHHHHHHHHhcCCCeeeehhhhhHHHHHHHHHHHHhcCeeeeecceeccc-----CCcchhhhhhcccceeeee
Confidence            88887 999999999999 9999999999999999999999999999999765421     1334467788999999999


Q ss_pred             ccCccchHHHHHHHHHHH----HHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecCC
Q 043295          164 STDHFDLHQDFISMTCDA----LRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE  223 (223)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~----~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~~  223 (223)
                      +..+++--.+.+.++..+    +.+|.++|..+.+|+-.++++||+.|.+|+++||+|+++..|
T Consensus      1681 LDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHIGKVvikvr~e 1744 (2376)
T KOG1202|consen 1681 LDSVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHIGKVVIKVRAE 1744 (2376)
T ss_pred             hhhhhcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHhccCccceEEEEEccc
Confidence            887744334445555444    556788999999999999999999999999999999998543

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.94  E-value=3.3e-25  Score=176.72  Aligned_cols=196  Identities=20%  Similarity=0.209  Sum_probs=162.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++++++++.++.|+|+++.+.. +++++|+|+  |++|++++|+|+..|++|+++++++++++.++ ++|++.++++.+.
T Consensus       142 ~~~~a~~~~~~~ta~~a~~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~-~~Ga~~~i~~~~~  220 (349)
T TIGR03201       142 LEHVSVVADAVTTPYQAAVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK-GFGADLTLNPKDK  220 (349)
T ss_pred             HHHhhhhcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HhCCceEecCccc
Confidence            4478888999999999998755 899999999  99999999999999999999999999999998 8999999887653


Q ss_pred             --ccHHHHHHHhCCC-Ccc----EEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEe
Q 043295           90 --TDLKATLKRYFPD-GID----VYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQG  161 (223)
Q Consensus        90 --~~~~~~i~~~~~~-~~d----~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g  161 (223)
                        .++.+.+++.+++ |+|    ++|||+|+. .+..++++++++|+++.+|.....      ..+++..++.++.++.|
T Consensus       221 ~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~------~~~~~~~~~~~~~~~~g  294 (349)
T TIGR03201       221 SAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAK------TEYRLSNLMAFHARALG  294 (349)
T ss_pred             cHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCC------cccCHHHHhhcccEEEE
Confidence              1467778888877 786    899999974 577889999999999999976431      23455666677788888


Q ss_pred             eeccCccchHHHHHHHHHHHHHcCCCCcc-ceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          162 FLSTDHFDLHQDFISMTCDALRAGKIQPL-EDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~-~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      +....     ...++.+++++++|.+++. +..+++|+++.+||+.+.+++..||+++++
T Consensus       295 ~~~~~-----~~~~~~~~~~i~~g~i~~~~~i~~~~l~~~~~A~~~~~~~~~~~k~~~~~  349 (349)
T TIGR03201       295 NWGCP-----PDRYPAALDLVLDGKIQLGPFVERRPLDQIEHVFAAAHHHKLKRRAILTP  349 (349)
T ss_pred             EecCC-----HHHHHHHHHHHHcCCCCcccceEEecHHHHHHHHHHHHcCCccceEEecC
Confidence            76543     4568889999999999753 334689999999999999999889998853

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.94  E-value=3.3e-25  Score=177.82  Aligned_cols=191  Identities=18%  Similarity=0.168  Sum_probs=159.2

Q ss_pred             hhhhhccccchhhHHHHHHHHh---hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHH-HHHHHHhhCCCeeeec
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS---QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEK-VAILKEKLGFDDAFNY   86 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~---~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~-~~~~~~~~g~~~~~~~   86 (223)
                      +++++++++++.|+|+++....   ++|++|+|.  |++|++++|+|+..|++|++++.++++ .+.++ ++|+++++++
T Consensus       152 ~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~-~lGa~~~i~~  230 (375)
T PLN02178        152 SDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID-RLGADSFLVT  230 (375)
T ss_pred             HHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH-hCCCcEEEcC
Confidence            4578889999999999997765   589999999  999999999999999999999877554 67777 8999999886


Q ss_pred             CCcccHHHHHHHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeecc
Q 043295           87 KEETDLKATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        87 ~~~~~~~~~i~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  165 (223)
                      .+.    +.+++.++ ++|++|||+|+. .+..++++++++|+++.+|.+..      ...++...++.++.++.|+...
T Consensus       231 ~~~----~~v~~~~~-~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~------~~~~~~~~~~~~~~~i~g~~~~  299 (375)
T PLN02178        231 TDS----QKMKEAVG-TMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEK------PLDLPIFPLVLGRKMVGGSQIG  299 (375)
T ss_pred             cCH----HHHHHhhC-CCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCC------CCccCHHHHHhCCeEEEEeCcc
Confidence            542    34555443 699999999975 68899999999999999987532      1245667777889999988765


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          166 DHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      .     .+.+.++++++.+|++++.+ .+|||+++++||+.+.+++..||+|+++.
T Consensus       300 ~-----~~~~~~~~~l~~~g~i~~~i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~~  349 (375)
T PLN02178        300 G-----MKETQEMLEFCAKHKIVSDI-ELIKMSDINSAMDRLAKSDVRYRFVIDVA  349 (375)
T ss_pred             C-----HHHHHHHHHHHHhCCCcccE-EEEeHHHHHHHHHHHHcCCCceEEEEEec
Confidence            5     45688899999999999887 56999999999999999988899999873

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=1.6e-25  Score=167.26  Aligned_cols=198  Identities=18%  Similarity=0.194  Sum_probs=170.4

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      .+.++-+.+...|+|-|..+.+  ++|+++.|+  |+||++++|-||..|+ ++++++-+++|++.++ ++|+++.+|..
T Consensus       167 l~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak-~fGaTe~iNp~  245 (375)
T KOG0022|consen  167 LEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK-EFGATEFINPK  245 (375)
T ss_pred             hhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH-hcCcceecChh
Confidence            3488899999999999988888  999999999  9999999999999999 9999999999999999 99999999887


Q ss_pred             Cc-ccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           88 EE-TDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        88 ~~-~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      +. ....+.+++.|++|+|+-|||+|+ +.+.+++.+++.+ |+-+.+|.....    ...+.+++.++ ++.++.|+..
T Consensus       246 d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~----~~i~~~p~~l~-~GR~~~Gs~F  320 (375)
T KOG0022|consen  246 DLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAG----QEISTRPFQLV-TGRTWKGSAF  320 (375)
T ss_pred             hccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCC----cccccchhhhc-cccEEEEEec
Confidence            42 248899999999999999999998 6899999999998 999999987653    33444555444 5888899888


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      ..+..  ++.+..+.+.+.++.++..  +++++||+++++||+.|.+++.. |.|+.
T Consensus       321 GG~K~--~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~Gksi-R~vl~  374 (375)
T KOG0022|consen  321 GGFKS--KSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSI-RCVLW  374 (375)
T ss_pred             ccccc--hhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceE-EEEEe
Confidence            87643  6778889999999977654  88889999999999999999877 66664

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.94  E-value=4.5e-25  Score=176.39  Aligned_cols=191  Identities=17%  Similarity=0.156  Sum_probs=156.8

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHH-HHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVA-ILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~-~~~~~~g~~~~~~~~   87 (223)
                      ++++|++++++.|+|+++....  ++|++|+|.  |++|++++|+|+..|++|++++.++++.. .++ ++|++.++++.
T Consensus       158 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~-~~Ga~~vi~~~  236 (360)
T PLN02586        158 LDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAIN-RLGADSFLVST  236 (360)
T ss_pred             HHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHH-hCCCcEEEcCC
Confidence            4578899999999999997766  789999999  99999999999999999998887766544 455 89999998866


Q ss_pred             CcccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      +.    +.+++.++ ++|++||++|+ ..+..++++++++|+++.+|....      ...+++..++.++..+.|+....
T Consensus       237 ~~----~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~------~~~~~~~~~~~~~~~i~g~~~~~  305 (360)
T PLN02586        237 DP----EKMKAAIG-TMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEK------PLELPIFPLVLGRKLVGGSDIGG  305 (360)
T ss_pred             CH----HHHHhhcC-CCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCC------CCccCHHHHHhCCeEEEEcCcCC
Confidence            43    24444444 69999999997 478899999999999999986532      22455666677788877776554


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                           ...++++++++.+|.+++.+ .+|+|+++.+||+.+.+++..||+|+++.
T Consensus       306 -----~~~~~~~~~li~~g~i~~~~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~~  354 (360)
T PLN02586        306 -----IKETQEMLDFCAKHNITADI-ELIRMDEINTAMERLAKSDVRYRFVIDVA  354 (360)
T ss_pred             -----HHHHHHHHHHHHhCCCCCcE-EEEeHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence                 45688899999999999876 47999999999999999988899999873

>PLN02827 Alcohol dehydrogenase-like

Probab=99.94  E-value=1.3e-24  Score=174.73  Aligned_cols=199  Identities=19%  Similarity=0.183  Sum_probs=163.1

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++++.+++++.|+|+++.+..  ++|++|||+  |++|++++|+|+..|+ .|++++.++++.+.++ ++|++.+++++
T Consensus       168 ~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~-~lGa~~~i~~~  246 (378)
T PLN02827        168 LHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK-TFGVTDFINPN  246 (378)
T ss_pred             HHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-HcCCcEEEccc
Confidence            3477888888899998876654  899999999  9999999999999999 5888888999999998 99999999887


Q ss_pred             Cc-ccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCch-HHHHhhcceEEeee
Q 043295           88 EE-TDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNM-IDIVYKRIKIQGFL  163 (223)
Q Consensus        88 ~~-~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~  163 (223)
                      +. +++.+.+++.+++++|++|||+|+ ..+..+++.++++ |+++.+|.+...      ..+.. ..++.+++++.|+.
T Consensus       247 ~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~------~~~~~~~~~~~~~~~i~g~~  320 (378)
T PLN02827        247 DLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAK------PEVSAHYGLFLSGRTLKGSL  320 (378)
T ss_pred             ccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCC------ccccccHHHHhcCceEEeee
Confidence            52 256777887776689999999997 4789999999998 999999976431      12222 35677899999987


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          164 STDHFDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      ...+.  ....+.++++++.+|.+++  .++.+|+|+++.+|++.+.+++. +|+||.+.
T Consensus       321 ~~~~~--~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~vi~~~  377 (378)
T PLN02827        321 FGGWK--PKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKC-LRCVIHMP  377 (378)
T ss_pred             cCCCc--hhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCc-eEEEEEec
Confidence            65431  1345788999999999998  68889999999999999998876 69999874

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.94  E-value=1.1e-24  Score=173.72  Aligned_cols=200  Identities=19%  Similarity=0.181  Sum_probs=157.2

Q ss_pred             hhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           14 VFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++++.+ .+..++|+++.... +++++|+|+  |++|++++|+|+..|++ |+++++++++++.++ ++|++.++++++.
T Consensus       138 ~~aa~~-~~~~~~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~Ga~~~i~~~~~  215 (347)
T PRK10309        138 EDGAFI-EPITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK-SLGAMQTFNSREM  215 (347)
T ss_pred             HHhhhh-hHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-HcCCceEecCccc
Confidence            355544 35666888865444 899999999  99999999999999996 788999999999998 8999999988765


Q ss_pred             ccHHHHHHHhCCC-Ccc-EEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           90 TDLKATLKRYFPD-GID-VYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        90 ~~~~~~i~~~~~~-~~d-~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                       + .+.+.+.+++ ++| ++|||+|+ ..+..++++++++|+++.+|......   .....++..++.+++++.|+....
T Consensus       216 -~-~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~---~~~~~~~~~~~~~~~~i~g~~~~~  290 (347)
T PRK10309        216 -S-APQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDL---HLTSATFGKILRKELTVIGSWMNY  290 (347)
T ss_pred             -C-HHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCc---ccChhhhhHHhhcCcEEEEEeccc
Confidence             4 5667777766 898 99999997 57899999999999999999764310   111112335677889999976542


Q ss_pred             ccchHHHHHHHHHHHHHcCCCC--ccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          167 HFDLHQDFISMTCDALRAGKIQ--PLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~--~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ......+.++++++++.+|.++  +.++.+++|+++.+|++.+.+++..||+|+++
T Consensus       291 ~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  346 (347)
T PRK10309        291 SSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI  346 (347)
T ss_pred             cCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence            1111235678899999999985  56888899999999999999988889999976

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.94  E-value=2.2e-24  Score=172.33  Aligned_cols=193  Identities=21%  Similarity=0.173  Sum_probs=160.1

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++++++++++.|||+++....  ++|++++|+  |++|++++|+|+..|++|++++.++++.+.+.+++|++.++++.+
T Consensus       155 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~  234 (357)
T PLN02514        155 PEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSD  234 (357)
T ss_pred             HHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCC
Confidence            4578899999999999998776  789999999  999999999999999999999888877766654799988776543


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      .    +.+.+.++ ++|++|||+|+ ..+..++++++++|+++.+|....      ...++...++.++.++.|+.... 
T Consensus       235 ~----~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i~g~~~~~-  302 (357)
T PLN02514        235 A----AEMQEAAD-SLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINT------PLQFVTPMLMLGRKVITGSFIGS-  302 (357)
T ss_pred             h----HHHHHhcC-CCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCC------CCcccHHHHhhCCcEEEEEecCC-
Confidence            2    23444443 69999999996 578899999999999999997642      12455667778899999987765 


Q ss_pred             cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          168 FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                          ...++++++++.+|.+++.+ .+|+|+++.+||+.+.+++..||+|+.++.
T Consensus       303 ----~~~~~~~~~~~~~g~l~~~i-~~~~l~~~~~A~~~~~~~~~~gk~v~~~~~  352 (357)
T PLN02514        303 ----MKETEEMLEFCKEKGLTSMI-EVVKMDYVNTAFERLEKNDVRYRFVVDVAG  352 (357)
T ss_pred             ----HHHHHHHHHHHHhCCCcCcE-EEEcHHHHHHHHHHHHcCCCceeEEEEccc
Confidence                45688899999999998776 479999999999999999988999998853

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.93  E-value=1.4e-24  Score=171.66  Aligned_cols=184  Identities=15%  Similarity=0.098  Sum_probs=153.4

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      +++++++++++.|||+++.... ++|++|+|+  |++|++++|+|+..|++|+++++++++++.++ ++|+++++++.+.
T Consensus       141 ~~~aa~l~~~~~ta~~~~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~-~~Ga~~vi~~~~~  219 (329)
T TIGR02822       141 DVELAPLLCAGIIGYRALLRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLAL-ALGAASAGGAYDT  219 (329)
T ss_pred             HHHhHHHhccchHHHHHHHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-HhCCceecccccc
Confidence            4478889999999999997655 899999999  99999999999999999999999999999999 9999999875432


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCcc
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  168 (223)
                       .         .+++|+++++.+. +.+..++++++++|+++.+|.....     ...+++..++.+++++.|+....  
T Consensus       220 -~---------~~~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~--  282 (329)
T TIGR02822       220 -P---------PEPLDAAILFAPAGGLVPPALEALDRGGVLAVAGIHLTD-----TPPLNYQRHLFYERQIRSVTSNT--  282 (329)
T ss_pred             -C---------cccceEEEECCCcHHHHHHHHHhhCCCcEEEEEeccCcc-----CCCCCHHHHhhCCcEEEEeecCC--
Confidence             1         1258888887764 6889999999999999999975321     12345566777888888876544  


Q ss_pred             chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          169 DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                         +..+.++++++.+|.+++ ++++|+|+++++||+.+.+++..||+|+
T Consensus       283 ---~~~~~~~~~l~~~g~i~~-i~~~~~l~~~~~A~~~~~~~~~~Gkvvl  328 (329)
T TIGR02822       283 ---RADAREFLELAAQHGVRV-TTHTYPLSEADRALRDLKAGRFDGAAVL  328 (329)
T ss_pred             ---HHHHHHHHHHHHhCCCee-EEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence               456788899999999985 5688999999999999999999999987

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.93  E-value=2.1e-24  Score=162.19  Aligned_cols=196  Identities=21%  Similarity=0.214  Sum_probs=167.5

Q ss_pred             hhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCc-
Q 043295           15 FANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEE-   89 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~-   89 (223)
                      +..++..++.++|||.++.. ++|++|||+  |++|+.+...||.+|+ +|+.++..+.|++.++ ++|++.+.+.... 
T Consensus       147 eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak-~~Ga~~~~~~~~~~  225 (354)
T KOG0024|consen  147 EEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAK-KFGATVTDPSSHKS  225 (354)
T ss_pred             hhcccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHH-HhCCeEEeeccccc
Confidence            56778999999999999988 999999999  9999999999999999 9999999999999999 8999888765552 


Q ss_pred             --ccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeecc
Q 043295           90 --TDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        90 --~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  165 (223)
                        ..+.+.+.+..++ .+|+.|||+|. ..++.++..++.+|+++.+|....      ...++......+++++.|+..+
T Consensus       226 ~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~------~~~fpi~~v~~kE~~~~g~fry  299 (354)
T KOG0024|consen  226 SPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAE------EIQFPIIDVALKEVDLRGSFRY  299 (354)
T ss_pred             cHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCC------ccccChhhhhhheeeeeeeeee
Confidence              1455666666665 79999999997 579999999999999999887553      4467788889999999998876


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCC-cCcEEEEecC
Q 043295          166 DHFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDN-IGKKFVRIAG  222 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~-~gk~v~~~~~  222 (223)
                      .     ...+..+++++++|++...  ++..|+++++.+||+.+..++. .-|+++..++
T Consensus       300 ~-----~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~~  354 (354)
T KOG0024|consen  300 C-----NGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGPE  354 (354)
T ss_pred             c-----cccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCCC
Confidence            5     5579999999999988754  7888999999999999998884 3488887653

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.93  E-value=3.6e-24  Score=170.96  Aligned_cols=191  Identities=20%  Similarity=0.241  Sum_probs=162.1

Q ss_pred             hhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           14 VFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++++. ..++.|||+++.... +++++|+|+  |++|.+++|+|+..|+ +|+++.+++++.+.++ ++|++.++++++.
T Consensus       150 ~~aa~-~~~~~ta~~~l~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~-~~ga~~~i~~~~~  227 (351)
T cd08233         150 EEAAL-VEPLAVAWHAVRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAE-ELGATIVLDPTEV  227 (351)
T ss_pred             HHhhh-ccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEECCCcc
Confidence            35544 468899999995444 889999999  9999999999999999 8999999999999998 8999999998887


Q ss_pred             ccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           90 TDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        90 ~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                       ++.+.+++.+++ ++|++|||+|+ ..+..++++++++|+++.+|....      ...+++..++.+++++.|+.... 
T Consensus       228 -~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~i~g~~~~~-  299 (351)
T cd08233         228 -DVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEK------PISFNPNDLVLKEKTLTGSICYT-  299 (351)
T ss_pred             -CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCC------CCccCHHHHHhhCcEEEEEeccC-
Confidence             888899888887 79999999985 688999999999999999997542      22456677788999999886554 


Q ss_pred             cchHHHHHHHHHHHHHcCCCCc--cceeeeccCCH-HHHHHHhHcCCCc-CcEEE
Q 043295          168 FDLHQDFISMTCDALRAGKIQP--LEDISNGVDSI-PSAFTGFFRGDNI-GKKFV  218 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~-~~a~~~~~~~~~~-gk~v~  218 (223)
                          .+.++++++++++|.+++  .++.+++++++ ++|++.+.+++.. ||+||
T Consensus       300 ----~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~  350 (351)
T cd08233         300 ----REDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILV  350 (351)
T ss_pred             ----cchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEe
Confidence                466889999999999964  46778999996 7999999999864 89987

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.93  E-value=3.9e-24  Score=168.87  Aligned_cols=200  Identities=18%  Similarity=0.238  Sum_probs=169.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++++.++..+.|||+++.... ++|++|+|+   |.+|++++|+|+..|+++++++.++++.+.++ ++|++.++++++
T Consensus       115 ~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~  193 (324)
T cd08292         115 DEVAAQLIAMPLSALMLLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELR-ALGIGPVVSTEQ  193 (324)
T ss_pred             HHHhhhccccHHHHHHHHHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHH-hcCCCEEEcCCC
Confidence            4578888889999999986644 899999999   78999999999999999999999999999998 789999998887


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      . ++.+.+.+.+++ ++|++|||+|+.....++++++++|+++.+|....     ....+++...+.++.++.++....+
T Consensus       194 ~-~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  267 (324)
T cd08292         194 P-GWQDKVREAAGGAPISVALDSVGGKLAGELLSLLGEGGTLVSFGSMSG-----EPMQISSGDLIFKQATVRGFWGGRW  267 (324)
T ss_pred             c-hHHHHHHHHhCCCCCcEEEECCCChhHHHHHHhhcCCcEEEEEecCCC-----CCCcCCHHHHhhCCCEEEEEEcHHh
Confidence            6 788889988887 99999999999888899999999999999986532     1223455556778999998876543


Q ss_pred             -----cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          168 -----FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       168 -----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                           +....+.+..+++++.+|.+++.+..+++++++.+|++.+.++...||+|++
T Consensus       268 ~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  324 (324)
T cd08292         268 SQEMSVEYRKRMIAELLTLALKGQLLLPVEAVFDLGDAAKAAAASMRPGRAGKVLLR  324 (324)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHCCCccCccccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence                 2234567888999999999997777789999999999999988888999874

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PLN02740 Alcohol dehydrogenase-like

Probab=99.93  E-value=5.7e-24  Score=171.39  Aligned_cols=199  Identities=18%  Similarity=0.196  Sum_probs=160.4

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++++.+++++.|||+++.+..  ++|++|+|+  |++|++++|+|+..|+ +|+++++++++++.++ ++|++.++++.
T Consensus       173 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~-~~Ga~~~i~~~  251 (381)
T PLN02740        173 LKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGK-EMGITDFINPK  251 (381)
T ss_pred             HHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH-HcCCcEEEecc
Confidence            4478888889999999886655  899999999  9999999999999999 6999999999999998 99999999877


Q ss_pred             Cc-ccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           88 EE-TDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        88 ~~-~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      +. .++.+.+++.+++++|++||++|+ +.+..++.+++++ |+++.+|.....    ....+....+ .++.++.|+..
T Consensus       252 ~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~----~~~~~~~~~~-~~~~~i~g~~~  326 (381)
T PLN02740        252 DSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTP----KMLPLHPMEL-FDGRSITGSVF  326 (381)
T ss_pred             cccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCC----ceecccHHHH-hcCCeEEEEec
Confidence            53 147778888776689999999997 6788999999996 999999976431    1112232323 36788888876


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ..+..  ...+.++++++.+|.+++  .++.+|+|+++++|++.+.+++. .|++|..
T Consensus       327 ~~~~~--~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~-~k~~~~~  381 (381)
T PLN02740        327 GDFKG--KSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKA-LRCLLHL  381 (381)
T ss_pred             CCCCc--HHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCc-eeEEEeC
Confidence            54321  345788999999999875  47788999999999999988865 4998863

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.93  E-value=9.7e-24  Score=169.39  Aligned_cols=198  Identities=22%  Similarity=0.239  Sum_probs=157.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++++.+++++.|||+++.+..  ++|++|||+  |++|++++|+|+..|+ +|+++++++++++.++ ++|+++++++.
T Consensus       161 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~-~lGa~~~i~~~  239 (368)
T cd08300         161 LDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK-KFGATDCVNPK  239 (368)
T ss_pred             hhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HcCCCEEEccc
Confidence            4578888889999999986655  899999999  9999999999999999 7999999999999998 99999999887


Q ss_pred             Ccc-cHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           88 EET-DLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        88 ~~~-~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      +.+ ++.+.+++.+++++|++|||+|+ ..+..++++++++ |+++.+|.....    .....+...+. ++..+.|+..
T Consensus       240 ~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~----~~~~~~~~~~~-~~~~~~g~~~  314 (368)
T cd08300         240 DHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAG----QEISTRPFQLV-TGRVWKGTAF  314 (368)
T ss_pred             ccchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCC----CccccCHHHHh-hcCeEEEEEe
Confidence            631 47788888877799999999997 5888999999886 999999976321    11122222232 3456666654


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      ..+.  ..+.+.++++++.+|.+++.  ++++++|+++.+||+.+.+++. .|++++
T Consensus       315 ~~~~--~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~~~~  368 (368)
T cd08300         315 GGWK--SRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKS-IRTVVK  368 (368)
T ss_pred             cccC--cHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCC-ceeeeC
Confidence            4321  24567889999999999864  7789999999999999988765 488874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.93  E-value=1.1e-23  Score=169.04  Aligned_cols=199  Identities=17%  Similarity=0.183  Sum_probs=156.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|.+++++.|||+++.+..  ++|++|||+  |++|++++|+|+..|+ +|++++.++++++.++ ++|++.++++.
T Consensus       160 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~-~~Ga~~~i~~~  238 (368)
T TIGR02818       160 LEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAK-KLGATDCVNPN  238 (368)
T ss_pred             HHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCCeEEccc
Confidence            4578889999999999986655  899999999  9999999999999999 7999999999999998 99999999876


Q ss_pred             Cc-ccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           88 EE-TDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        88 ~~-~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      +. .++.+.+++.+++++|++|||+|+ ..+..++++++++ |+++.+|.....    ....++...+. ++..+.|+..
T Consensus       239 ~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~----~~~~~~~~~~~-~~~~~~g~~~  313 (368)
T TIGR02818       239 DYDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAG----QEISTRPFQLV-TGRVWRGSAF  313 (368)
T ss_pred             ccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCC----CcccccHHHHh-ccceEEEeec
Confidence            42 146677888777789999999996 5788999999886 999999975421    11122333333 3445666654


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ...  ..+..+.++++++.+|.+++  .++++|+|+++.+|++.+.+++. .|+++.+
T Consensus       314 ~~~--~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~-~k~~v~~  368 (368)
T TIGR02818       314 GGV--KGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS-IRTVIHY  368 (368)
T ss_pred             cCC--CcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCc-eeEEeeC
Confidence            321  11346788999999999864  47889999999999999988764 5998864

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.92  E-value=1.7e-23  Score=168.10  Aligned_cols=197  Identities=16%  Similarity=0.182  Sum_probs=159.8

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++++.+++++.|||+++.+..  ++|++|+|+  |++|++++|+|+..|+ +|+++++++++.+.++ ++|++.++++.
T Consensus       162 ~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~-~~Ga~~~i~~~  240 (369)
T cd08301         162 LDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAK-KFGVTEFVNPK  240 (369)
T ss_pred             HHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcCCceEEccc
Confidence            4578888889999999887655  899999999  9999999999999999 8999999999999998 89999998876


Q ss_pred             Cc-ccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           88 EE-TDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        88 ~~-~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      +. +++.+.+++.+++++|++|||+|+ ..+..++.+++++ |+++.+|.....    ....++...++ +++++.|+..
T Consensus       241 ~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~----~~~~~~~~~~~-~~~~i~g~~~  315 (369)
T cd08301         241 DHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKD----AVFSTHPMNLL-NGRTLKGTLF  315 (369)
T ss_pred             ccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCC----cccccCHHHHh-cCCeEEEEec
Confidence            52 156777887777689999999996 4688899999996 999999976531    11233333343 6889998876


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                      ..+.  .+..++++++++.+|.+++.  ++.+|||+++.+||+.+.+++.. |+++
T Consensus       316 ~~~~--~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~  368 (369)
T cd08301         316 GGYK--PKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECL-RCIL  368 (369)
T ss_pred             CCCC--hHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCce-eEEe
Confidence            5431  23467889999999988653  67889999999999999988865 8876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.92  E-value=2e-23  Score=167.30  Aligned_cols=196  Identities=19%  Similarity=0.196  Sum_probs=158.1

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++.++.+++++.|||+++....  +++++|||+  |++|++++|+|+..|+ +|+++++++++.+.++ ++|++.+++++
T Consensus       152 ~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~  230 (361)
T cd08231         152 DEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR-EFGADATIDID  230 (361)
T ss_pred             HHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcCCCeEEcCc
Confidence            3467777799999999998877  599999999  9999999999999999 9999999999999998 89999888876


Q ss_pred             CcccH---HHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEee
Q 043295           88 EETDL---KATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGF  162 (223)
Q Consensus        88 ~~~~~---~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  162 (223)
                      +. ++   ...+++.+++ ++|++|||+|+ ..+..++++++++|+++.+|.....    ....++...++.++.++.++
T Consensus       231 ~~-~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~  305 (361)
T cd08231         231 EL-PDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPA----GTVPLDPERIVRKNLTIIGV  305 (361)
T ss_pred             cc-ccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCC----CccccCHHHHhhcccEEEEc
Confidence            54 32   3567788877 99999999986 6788999999999999999865421    12234445668889998888


Q ss_pred             eccCccchHHHHHHHHHHHHHcC----CCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          163 LSTDHFDLHQDFISMTCDALRAG----KIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~g----~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ....     .+.++++++++.++    .+++.++.+++++++.+||+.+.++.. +|+||++
T Consensus       306 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~-~k~vi~~  361 (361)
T cd08231         306 HNYD-----PSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTA-LKVVIDP  361 (361)
T ss_pred             ccCC-----chhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCc-eEEEeCC
Confidence            7544     34466677777766    344567788999999999999988764 7999863

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.92  E-value=5.9e-23  Score=164.69  Aligned_cols=197  Identities=17%  Similarity=0.200  Sum_probs=157.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++++.+++++.|||+++....  ++|++|+|+  |++|++++|+|+..|+ +|+++++++++++.++ ++|++.++++.
T Consensus       159 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~-~~ga~~~i~~~  237 (365)
T cd08277         159 LEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK-EFGATDFINPK  237 (365)
T ss_pred             HHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HcCCCcEeccc
Confidence            4588888999999999986655  899999999  9999999999999999 7999999999999998 89999998876


Q ss_pred             Cc-ccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           88 EE-TDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        88 ~~-~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      +. .++.+.+++.+++++|++|||+|+ ..+..++++++++ |+++.+|...+.     ...++...++. +.++.|+..
T Consensus       238 ~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~-----~~~~~~~~~~~-~~~i~g~~~  311 (365)
T cd08277         238 DSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGA-----ELSIRPFQLIL-GRTWKGSFF  311 (365)
T ss_pred             cccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCcc-----ccccCHhHHhh-CCEEEeeec
Confidence            53 145677777776789999999995 6778899999885 999999976431     11233434443 788888776


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCC--ccceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQ--PLEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~--~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      ..+.  .+..+.++++++.+|.++  +.++++|+|+++.+|++.+.+++. .|+++.
T Consensus       312 ~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~k~~i~  365 (365)
T cd08277         312 GGFK--SRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGEC-IRTVIT  365 (365)
T ss_pred             CCCC--hHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCCC-ceEeeC
Confidence            5431  134578899999998765  557888999999999999988874 588863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.92  E-value=1.1e-22  Score=160.66  Aligned_cols=201  Identities=24%  Similarity=0.297  Sum_probs=167.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++++++++++.|||..+.... +++++|+|+   |++|.+++|+|+..|++|+++++++++.+.++ ++|++.++++.+
T Consensus       118 ~~~a~~~~~~~~ta~~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~  196 (324)
T cd08244         118 LEAAVAVVHDGRTALGLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVR-ALGADVAVDYTR  196 (324)
T ss_pred             HHHHhhhcchHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCEEEecCC
Confidence            4578889999999965444333 899999999   89999999999999999999999999999998 899988888887


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      . ++.+.+...+++ ++|+++||+|+.....++++++++|+++.+|.....     ...++....+.+++++.++.....
T Consensus       197 ~-~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  270 (324)
T cd08244         197 P-DWPDQVREALGGGGVTVVLDGVGGAIGRAALALLAPGGRFLTYGWASGE-----WTALDEDDARRRGVTVVGLLGVQA  270 (324)
T ss_pred             c-cHHHHHHHHcCCCCceEEEECCChHhHHHHHHHhccCcEEEEEecCCCC-----CCccCHHHHhhCCcEEEEeecccC
Confidence            6 788888888777 899999999998889999999999999999875432     113444566788888888776543


Q ss_pred             -cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          168 -FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       168 -~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                       +....+.+.++++++.++.+.+.+...++++++.+|++.+.++...||+|+++
T Consensus       271 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  324 (324)
T cd08244         271 ERGGLRALEARALAEAAAGRLVPVVGQTFPLERAAEAHAALEARSTVGKVLLLP  324 (324)
T ss_pred             CHHHHHHHHHHHHHHHHCCCccCccceEEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence             33445678889999999999887778899999999999999998999999864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.92  E-value=7.9e-23  Score=162.12  Aligned_cols=191  Identities=19%  Similarity=0.250  Sum_probs=162.8

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      +++++++++++.|||+++.... +++++|+|+  |++|++++|+|+..|++|+++++++++++.++ ++|+++++++.+.
T Consensus       139 ~~~aa~l~~~~~ta~~~~~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~i~~~~~  217 (333)
T cd08296         139 AAEAAPLLCAGVTTFNALRNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLAR-KLGAHHYIDTSKE  217 (333)
T ss_pred             HHHhhhhhhhhHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH-HcCCcEEecCCCc
Confidence            3478889999999999997766 899999999  99999999999999999999999999999998 8999999998876


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCC-hHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCcc
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVG-GEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  168 (223)
                       ++.+.+++.  +++|+++|+.| +..+...+++++++|+++.+|....      ..+++...++.+++++.++....  
T Consensus       218 -~~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~i~~~~~~~--  286 (333)
T cd08296         218 -DVAEALQEL--GGAKLILATAPNAKAISALVGGLAPRGKLLILGAAGE------PVAVSPLQLIMGRKSIHGWPSGT--  286 (333)
T ss_pred             -cHHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEecCCC------CCCcCHHHHhhcccEEEEeCcCC--
Confidence             677777665  36999999997 5788899999999999999997642      22445566778999999987544  


Q ss_pred             chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          169 DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                         ...+..++++++++.+++.+ .+++++++.+|++.+.+++..||+|++
T Consensus       287 ---~~~~~~~~~~~~~~~l~~~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~  333 (333)
T cd08296         287 ---ALDSEDTLKFSALHGVRPMV-ETFPLEKANEAYDRMMSGKARFRVVLT  333 (333)
T ss_pred             ---HHHHHHHHHHHHhCCCCceE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence               45677888899999998775 578999999999999999999999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.91  E-value=9.8e-23  Score=160.77  Aligned_cols=200  Identities=22%  Similarity=0.235  Sum_probs=168.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +.+++.++..+.|||+++....  .++++|+|+   |++|++++|+|+..|++++++++++++.+.++ ++|++.++++.
T Consensus       113 ~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~  191 (323)
T cd05282         113 DEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELK-ALGADEVIDSS  191 (323)
T ss_pred             HHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHH-hcCCCEEeccc
Confidence            4477888899999999998876  889999999   78999999999999999999999999999998 89999999888


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      +. ++...+.+.+++ ++|+++||+|+......+++++++|+++.+|.....     ....+...+..++.++.++....
T Consensus       192 ~~-~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  265 (323)
T cd05282         192 PE-DLAQRVKEATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLLSGE-----PVPFPRSVFIFKDITVRGFWLRQ  265 (323)
T ss_pred             ch-hHHHHHHHHhcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccCCCC-----CCCCCHHHHhhcCceEEEEEehH
Confidence            76 788888888877 999999999998778889999999999999875432     12344555555888888877554


Q ss_pred             c-----cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          167 H-----FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       167 ~-----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      +     +....+.+.++++++.+|.+.+.+...++++++.++++.+.+++..||+|++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  323 (323)
T cd05282         266 WLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDFEEAVAAAEQPGRGGKVLLT  323 (323)
T ss_pred             hhccCCHHHHHHHHHHHHHHHhCCCcccCccceecHHHHHHHHHHHhcCCCCceEeeC
Confidence            3     2344567888999999999988777888999999999999998888999874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.91  E-value=6.9e-23  Score=151.42  Aligned_cols=204  Identities=19%  Similarity=0.223  Sum_probs=164.3

Q ss_pred             chhhhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCC
Q 043295           10 RSCYVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFD   81 (223)
Q Consensus        10 ~~~~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~   81 (223)
                      +++. .||++....+|||++|.+.-  .+|++|+-.   ++||.+.+|+||.+|++-+.++|+....+.+++   .+|++
T Consensus       133 ~pl~-~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~  211 (354)
T KOG0025|consen  133 IPLA-SAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGAT  211 (354)
T ss_pred             CChh-hhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCc
Confidence            5544 89999999999999999887  899998888   899999999999999999999988776655543   58999


Q ss_pred             eeeecCCcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEE
Q 043295           82 DAFNYKEETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQ  160 (223)
Q Consensus        82 ~~~~~~~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (223)
                      +|+...+- .-.+..+..... .+.+.|||+|+.......+.|..||+++.+|..+.     .+.......++.++++++
T Consensus       212 ~ViTeeel-~~~~~~k~~~~~~~prLalNcVGGksa~~iar~L~~GgtmvTYGGMSk-----qPv~~~ts~lIFKdl~~r  285 (354)
T KOG0025|consen  212 EVITEEEL-RDRKMKKFKGDNPRPRLALNCVGGKSATEIARYLERGGTMVTYGGMSK-----QPVTVPTSLLIFKDLKLR  285 (354)
T ss_pred             eEecHHHh-cchhhhhhhccCCCceEEEeccCchhHHHHHHHHhcCceEEEecCccC-----CCcccccchheeccceee
Confidence            99865442 111112222223 78999999999888889999999999999998875     445667788899999999


Q ss_pred             eeeccCc------cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCC-CcCcEEEEe
Q 043295          161 GFLSTDH------FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGD-NIGKKFVRI  220 (223)
Q Consensus       161 g~~~~~~------~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~-~~gk~v~~~  220 (223)
                      |++...|      ++.+.+.+.++.+++++|+|+.+.....+|++...|++...+.. ..||-++.+
T Consensus       286 GfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~  352 (354)
T KOG0025|consen  286 GFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPNCEKVPLADHKTALDAALSKFGKSGKQIIVL  352 (354)
T ss_pred             eeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccccceeeechhhhHHHHHHHHHhccCCceEEEe
Confidence            9999888      44556789999999999999998877889999888888766554 346666654

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.91  E-value=1.8e-22  Score=163.51  Aligned_cols=196  Identities=19%  Similarity=0.247  Sum_probs=162.8

Q ss_pred             hhhhhccccchhhHHHHHHHH--h--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEI--S--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFN   85 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~--~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~   85 (223)
                      +++++.+++++.|||+++...  .  +++++|+|+   |++|++++|+|+..|++++++++++++.+.++ ++|++.+++
T Consensus       166 ~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~-~~G~~~~i~  244 (393)
T cd08246         166 WEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCR-ALGAEGVIN  244 (393)
T ss_pred             HHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-HcCCCEEEc
Confidence            347788999999999998765  3  889999999   89999999999999999999999999999998 899998888


Q ss_pred             cCCcc---------------------cHHHHHHHhCCC--CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccc
Q 043295           86 YKEET---------------------DLKATLKRYFPD--GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADAS  142 (223)
Q Consensus        86 ~~~~~---------------------~~~~~i~~~~~~--~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  142 (223)
                      +++.+                     .+.+.+.+.+++  ++|++|||+|+..+..++++++++|+++.+|.....    
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~----  320 (393)
T cd08246         245 RRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRATFPTSVFVCDRGGMVVICAGTTGY----  320 (393)
T ss_pred             ccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHhHHHHHHHhccCCEEEEEcccCCC----
Confidence            64320                     245667777775  799999999998889999999999999999865432    


Q ss_pred             cCCCCchHHHHhhcceEEeeeccCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcC-CCcCcEEEE
Q 043295          143 KRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRG-DNIGKKFVR  219 (223)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~-~~~gk~v~~  219 (223)
                       ....+...++.++.++.|+....     .+.+..+++++++|.+.+.+..+++++++.+|++.+.++ +..||+|+-
T Consensus       321 -~~~~~~~~l~~~~~~i~g~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~~gkvvv~  392 (393)
T cd08246         321 -NHTYDNRYLWMRQKRIQGSHFAN-----DREAAEANRLVMKGRIDPCLSKVFSLDETPDAHQLMHRNQHHVGNMAVL  392 (393)
T ss_pred             -CCCCcHHHHhhheeEEEecccCc-----HHHHHHHHHHHHcCCceeeeeEEEeHHHHHHHHHHHHhCccccceEEEe
Confidence             12345566677888888876554     456788999999999988777889999999999999998 788999874

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.91  E-value=7.6e-23  Score=162.42  Aligned_cols=197  Identities=25%  Similarity=0.250  Sum_probs=161.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHh-hCCCeeeec
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEK-LGFDDAFNY   86 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~-~g~~~~~~~   86 (223)
                      ..+++++..++.|+|++.....  .++.+|+|+  |++|++++|+++..|+ +|++++.+++|+++++ + .|++.+++.
T Consensus       143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~-~~~g~~~~~~~  221 (350)
T COG1063         143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAK-EAGGADVVVNP  221 (350)
T ss_pred             ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH-HhCCCeEeecC
Confidence            4588999999999988744443  666699999  9999999999999998 8999999999999999 6 666767666


Q ss_pred             CCcccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           87 KEETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        87 ~~~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      .+. +....+.+.+++ |+|++|||+|. ..+..++++++++|+++.+|.+....     ...+...++.+++++.|+..
T Consensus       222 ~~~-~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~-----~~~~~~~~~~kel~l~gs~~  295 (350)
T COG1063         222 SED-DAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGED-----IPLPAGLVVSKELTLRGSLR  295 (350)
T ss_pred             ccc-cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCcc-----CccCHHHHHhcccEEEeccC
Confidence            554 677788889988 99999999997 46899999999999999999876531     14567788999999999843


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCC-cCcEEEEe
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDN-IGKKFVRI  220 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~-~gk~v~~~  220 (223)
                      ..    ....++.+++++.+|++++.  ++..++++++++|++.+.+++. ..|+++.+
T Consensus       296 ~~----~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         296 PS----GREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             CC----CcccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            22    14568889999999999976  4566789999999999998664 45888763

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.91  E-value=2.4e-22  Score=159.05  Aligned_cols=202  Identities=46%  Similarity=0.729  Sum_probs=163.7

Q ss_pred             hhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh-hCCCeeeecCC
Q 043295           15 FANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK-LGFDDAFNYKE   88 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~-~g~~~~~~~~~   88 (223)
                      .++++++++.|||+++....  .++++|+|+   |++|++++|+|+..|++|+++++++++.+.++ + +|++.++++++
T Consensus       122 ~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~-~~~g~~~~~~~~~  200 (329)
T cd05288         122 YLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLV-EELGFDAAINYKT  200 (329)
T ss_pred             HHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hhcCCceEEecCC
Confidence            33448999999999997766  889999999   79999999999999999999999999999998 6 99999998887


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCcc
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  168 (223)
                      . ++.+.+.+.+++++|+++||+|+..+..++++++++|+++.+|.............++....+.++.++.++......
T Consensus       201 ~-~~~~~v~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (329)
T cd05288         201 P-DLAEALKEAAPDGIDVYFDNVGGEILDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYA  279 (329)
T ss_pred             h-hHHHHHHHhccCCceEEEEcchHHHHHHHHHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhH
Confidence            6 777888877756899999999998899999999999999999865432110000023355667788888887654433


Q ss_pred             chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          169 DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                      ....+.+.++++++.+|.+++....+++++++.++++.+.+++..||+|+
T Consensus       280 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv  329 (329)
T cd05288         280 DRFPEALAELAKWLAEGKLKYREDVVEGLENAPEAFLGLFTGKNTGKLVV  329 (329)
T ss_pred             HHHHHHHHHHHHHHHCCCccccccccccHHHHHHHHHHHhcCCCccceeC
Confidence            23356788899999999998776667899999999999998888888874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.91  E-value=1.9e-22  Score=161.95  Aligned_cols=197  Identities=25%  Similarity=0.320  Sum_probs=165.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +.++++++.+++|||+++....  .++++|+|+  |++|.+++|+|+..|++ |+++..++++.+.++ ++|++.+++++
T Consensus       162 ~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~-~~g~~~v~~~~  240 (367)
T cd08263         162 YTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAK-ELGATHTVNAA  240 (367)
T ss_pred             HHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HhCCceEecCC
Confidence            4588999999999999998776  889999999  99999999999999997 999988999999998 89999999988


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeecc
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  165 (223)
                      +. ++.+.++...++ ++|+++|++++. ....++++++++|+++.+|.....    .....+...++.++.++.++...
T Consensus       241 ~~-~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  315 (367)
T cd08263         241 KE-DAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGG----ATAEIPITRLVRRGIKIIGSYGA  315 (367)
T ss_pred             cc-cHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCC----CccccCHHHHhhCCeEEEecCCC
Confidence            76 788888888766 899999999986 889999999999999999865431    12234555555788888775322


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          166 DHFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      .    ..+.++.+++++++|.+++.  +...++++++.++++.+.+++..||+|++
T Consensus       316 ~----~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~  367 (367)
T cd08263         316 R----PRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE  367 (367)
T ss_pred             C----cHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence            2    14678889999999999874  56678999999999999998888999974

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.91  E-value=3.4e-22  Score=159.51  Aligned_cols=194  Identities=19%  Similarity=0.230  Sum_probs=162.3

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +.+++++++.+.|||+++....  .++++|+|+  |++|.+++|+|+..|+ +|++++.++++.+.++ ++|++.+++++
T Consensus       150 ~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~  228 (350)
T cd08240         150 PALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAK-AAGADVVVNGS  228 (350)
T ss_pred             HHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HhCCcEEecCC
Confidence            4478889999999999998877  589999999  9999999999999999 7999998999999998 89998888887


Q ss_pred             CcccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      +. ++.+.+.+..++++|++||++|+ ..+..++++|+++|+++.+|.....      ...+......++.++.++....
T Consensus       229 ~~-~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~------~~~~~~~~~~~~~~i~~~~~~~  301 (350)
T cd08240         229 DP-DAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGE------ATLPLPLLPLRALTIQGSYVGS  301 (350)
T ss_pred             Cc-cHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCC------CcccHHHHhhcCcEEEEcccCC
Confidence            65 67777777666589999999984 6889999999999999999875432      1223333444778887766554


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                           .+.+.++++++++|.+++.....++++++.++++.+.+++..||++++
T Consensus       302 -----~~~~~~~~~ll~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  349 (350)
T cd08240         302 -----LEELRELVALAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVLK  349 (350)
T ss_pred             -----HHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCCccceEEec
Confidence                 466888999999999987777788999999999999998888999985

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.91  E-value=4e-22  Score=158.50  Aligned_cols=192  Identities=21%  Similarity=0.249  Sum_probs=161.9

Q ss_pred             hhhhhccccchhhHHHHHHHH-h--hCCCEEEEE--CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCCCeeeec
Q 043295           13 YVFANGAGTSGFTAYVGFYEI-S--QKGEKVFVS--GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGFDDAFNY   86 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~-~--~~g~~vlI~--g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~~~~~~~   86 (223)
                      ++++++++..+.|||+++... .  .++++|+|+  |++|.+++|+|+..| ++|+++.+++++.+.++ ++|+++++++
T Consensus       141 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~-~~g~~~~~~~  219 (340)
T cd05284         141 PVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAE-RLGADHVLNA  219 (340)
T ss_pred             HHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH-HhCCcEEEcC
Confidence            558999999999999999886 3  789999999  789999999999999 79999999999999998 8999999988


Q ss_pred             CCcccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           87 KEETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        87 ~~~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      ++  .+.+.+++.+++ ++|+++||+|+ .....++++++++|+++.+|....       ...+....+.+++++.++..
T Consensus       220 ~~--~~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~-------~~~~~~~~~~~~~~~~~~~~  290 (340)
T cd05284         220 SD--DVVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-------GRLPTSDLVPTEISVIGSLW  290 (340)
T ss_pred             Cc--cHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC-------CccCHHHhhhcceEEEEEec
Confidence            76  377788888776 89999999996 788999999999999999986542       12334444578888887765


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ..     .+.+..+++++++|.+++. ...++++++.+|++.+.+++..||+|+.+
T Consensus       291 ~~-----~~~~~~~~~~l~~g~l~~~-~~~~~~~~~~~a~~~~~~~~~~gkvv~~~  340 (340)
T cd05284         291 GT-----RAELVEVVALAESGKVKVE-ITKFPLEDANEALDRLREGRVTGRAVLVP  340 (340)
T ss_pred             cc-----HHHHHHHHHHHHhCCCCcc-eEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence            43     5668889999999999874 45789999999999999999899999753

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=3.7e-22  Score=159.27  Aligned_cols=193  Identities=22%  Similarity=0.240  Sum_probs=158.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +.+++++++++.|||+++.... +++++|+|+   |++|++++|+|+..|++|++++.++ +.+.++ ++|++.+++...
T Consensus       153 ~~~~a~l~~~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~-~~g~~~~~~~~~  230 (350)
T cd08274         153 DVELATFPCSYSTAENMLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVR-ALGADTVILRDA  230 (350)
T ss_pred             HHHHHhcccHHHHHHHHHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHH-hcCCeEEEeCCC
Confidence            4578889999999999985444 899999999   8999999999999999999998665 788887 899976665544


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      . ...+  ...+++ ++|++|||+|++.+..++++++++|+++.+|....     ....++...++.++.++.++.... 
T Consensus       231 ~-~~~~--~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-  301 (350)
T cd08274         231 P-LLAD--AKALGGEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAIAG-----PVVELDLRTLYLKDLTLFGSTLGT-  301 (350)
T ss_pred             c-cHHH--HHhhCCCCCcEEEecCCHHHHHHHHHHhccCCEEEEecccCC-----ccccCCHHHhhhcceEEEEeecCC-
Confidence            3 3333  445555 89999999999889999999999999999986532     113455667778888988877654 


Q ss_pred             cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          168 FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                          .+.+.++++++.+|.+++.+..+++++++.++++.+.++...||+|+++
T Consensus       302 ----~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~  350 (350)
T cd08274         302 ----REVFRRLVRYIEEGEIRPVVAKTFPLSEIREAQAEFLEKRHVGKLVLVP  350 (350)
T ss_pred             ----HHHHHHHHHHHHCCCcccccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence                5678889999999999887778889999999999999888889999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.90  E-value=2.7e-22  Score=161.77  Aligned_cols=199  Identities=16%  Similarity=0.150  Sum_probs=151.5

Q ss_pred             hhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeE-EEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           15 FANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYV-VGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      .++++..++.|+|+++.... +++++|+|.  |++|++++|+|+..|+++ ++++.++++++.++ ++|++. +++....
T Consensus       163 ~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~-~~Ga~~-v~~~~~~  240 (393)
T TIGR02819       163 DLTMLSDIFPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQAR-SFGCET-VDLSKDA  240 (393)
T ss_pred             ceeeeccHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH-HcCCeE-EecCCcc
Confidence            46778888999999997655 899999999  999999999999999964 45567788999999 899974 5543321


Q ss_pred             cHHHHHHHhCCC-CccEEEcCCChH---------------HHHHHHHhhccCcEEEEEcccccccc-c------ccCCCC
Q 043295           91 DLKATLKRYFPD-GIDVYFDNVGGE---------------MLEAAVANMNLFGRVAACGVISECAD-A------SKRAVP  147 (223)
Q Consensus        91 ~~~~~i~~~~~~-~~d~vid~~g~~---------------~~~~~~~~l~~~G~~v~~g~~~~~~~-~------~~~~~~  147 (223)
                      ++.+.+.+.+++ ++|++|||+|.+               .+..++++++++|+++.+|....... .      ....++
T Consensus       241 ~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i  320 (393)
T TIGR02819       241 TLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSI  320 (393)
T ss_pred             cHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeecCCccccccccccccccccc
Confidence            677788888877 899999999963               79999999999999999998632110 0      001223


Q ss_pred             chHHHHhhcceEEeeeccCccchHHHHHHHHHHHHHcCCCCcc--ce-eeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          148 NMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPL--ED-ISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~--~~-~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      .....+.++.++.|.....     .++..++++++.+|++++.  ++ ++|||+++.+||+.+.+++. +|+++.++
T Consensus       321 ~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~~~~-~Kvvi~~~  391 (393)
T TIGR02819       321 RFGLGWAKSHSFHTGQTPV-----MKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDAGAA-KKFVIDPH  391 (393)
T ss_pred             chHHhhccCceEEeccCCh-----hhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhhCCc-eEEEEeCC
Confidence            3444555666666632221     3445679999999999864  44 67999999999999988754 79999864

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.90  E-value=6.9e-22  Score=160.25  Aligned_cols=198  Identities=19%  Similarity=0.244  Sum_probs=163.0

Q ss_pred             hhhhhccccchhhHHHHHHHH--h--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEI--S--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFN   85 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~--~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~   85 (223)
                      +++++.++.++.|||+++...  .  .++++++|+   |++|++++|+|+..|+++++++.++++.+.++ ++|++.++|
T Consensus       162 ~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~-~~g~~~~v~  240 (398)
T TIGR01751       162 WEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCR-ELGAEAVID  240 (398)
T ss_pred             HHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCCEEec
Confidence            347788889999999998762  2  889999999   89999999999999999998888999999999 799999988


Q ss_pred             cCCc---------------------ccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEccccccccccc
Q 043295           86 YKEE---------------------TDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASK  143 (223)
Q Consensus        86 ~~~~---------------------~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  143 (223)
                      +++.                     ..+.+.+.+.+++ ++|++|||+|+..+..++++++++|+++.+|......    
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~----  316 (398)
T TIGR01751       241 RNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRATFPTSVFVCRRGGMVVICGGTTGYN----  316 (398)
T ss_pred             CCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHHHHHHHHhhccCCEEEEEccccCCC----
Confidence            7542                     0245567777776 8999999999888889999999999999998765421    


Q ss_pred             CCCCchHHHHhhcceEEeeeccCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          144 RAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       144 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                       ...+...++.++.++.++....     .+.++++++++.++.+.+.+..+++++++.++++.+.+++..||+|+++.
T Consensus       317 -~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~~  388 (398)
T TIGR01751       317 -HDYDNRYLWMRQKRIQGSHFAN-----LREAWEANRLVAKGRIDPTLSKVYPLEEIGQAHQDVHRNHHQGNVAVLVL  388 (398)
T ss_pred             -CCcCHHHHhhcccEEEccccCc-----HHHHHHHHHHHHCCCcccceeeEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence             2334555666777777766544     34467899999999999888888999999999999999999999999874

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.90  E-value=9.9e-22  Score=156.32  Aligned_cols=195  Identities=23%  Similarity=0.283  Sum_probs=164.4

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +.++++++..+.|||+++.... +++++++|+   +++|.+++|+|+..|++|+++++++++.+.++ ++|++.++++.+
T Consensus       141 ~~~~a~l~~~~~ta~~~~~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~  219 (341)
T cd08297         141 FEQAAPLLCAGVTVYKALKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAK-ELGADAFVDFKK  219 (341)
T ss_pred             HHHHHHHHcchHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HcCCcEEEcCCC
Confidence            3478889999999999997766 899999999   56999999999999999999999999999997 899999998887


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCC-hHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVG-GEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      . ++.+.+.+.+++ ++|+++|+.+ +.....++++++++|+++.+|.....     ....+...+..++.++.+.....
T Consensus       220 ~-~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  293 (341)
T cd08297         220 S-DDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGG-----FIPLDPFDLVLRGITIVGSLVGT  293 (341)
T ss_pred             c-cHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCCC-----CCCCCHHHHHhcccEEEEeccCC
Confidence            6 788888888866 9999999766 57888999999999999999865421     12345556667888888755443


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                           .+.++.++++++++.+++.+ ..++++++.++++.+..+...||+|+++
T Consensus       294 -----~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~  341 (341)
T cd08297         294 -----RQDLQEALEFAARGKVKPHI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF  341 (341)
T ss_pred             -----HHHHHHHHHHHHcCCCccee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence                 56788899999999998755 5689999999999999999999999874

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.90  E-value=1.1e-21  Score=155.47  Aligned_cols=204  Identities=22%  Similarity=0.296  Sum_probs=167.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +.+++.++.++.|||+++....  +++++|+|+   |++|++++|+|+..|++++.+..++++.+.++ ++|++.++++.
T Consensus       115 ~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~  193 (334)
T PTZ00354        115 FEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCK-KLAAIILIRYP  193 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEecC
Confidence            3477889999999999998866  899999999   89999999999999999888898999999998 89998888887


Q ss_pred             Cccc-HHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeecc
Q 043295           88 EETD-LKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        88 ~~~~-~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  165 (223)
                      .. + +.+.+++.+++ ++|+++||+|++.+..++++++++|+++.+|......    ...++...++.++.++.++...
T Consensus       194 ~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  268 (334)
T PTZ00354        194 DE-EGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGFMGGAK----VEKFNLLPLLRKRASIIFSTLR  268 (334)
T ss_pred             Ch-hHHHHHHHHHhCCCCceEEEECCchHHHHHHHHHhccCCeEEEEecCCCCc----ccccCHHHHHhhCCEEEeeecc
Confidence            65 4 77888888876 9999999999988999999999999999998643321    1114555566677788776544


Q ss_pred             Cc-----cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          166 DH-----FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       166 ~~-----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                      ..     +....+.++.+++++.+|.+.+.+...++++++.++++.+.++...||+|+.+.+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~~  330 (334)
T PTZ00354        269 SRSDEYKADLVASFEREVLPYMEEGEIKPIVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVNE  330 (334)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHhCCCCceEEEecCC
Confidence            31     1122355677889999999988777788999999999999988888999998854

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.90  E-value=4.4e-22  Score=158.95  Aligned_cols=198  Identities=18%  Similarity=0.187  Sum_probs=156.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++++.++.++.|||+++.... +++++|||+  |++|++++|+|+..|+ .|+++++++++.+.++ ++|++.++++.+
T Consensus       142 ~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~~  220 (351)
T cd08285         142 DEQAVMLPDMMSTGFHGAELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK-EYGATDIVDYKN  220 (351)
T ss_pred             HHHhhhhccchhhHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HcCCceEecCCC
Confidence            4478888899999999975555 899999999  9999999999999999 6899998999999998 899999999887


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCch--HHHHhhcceEEeeec
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNM--IDIVYKRIKIQGFLS  164 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~  164 (223)
                      . ++.+.+.+.+++ ++|+++||+|+ +.+..++++++++|+++.+|.....    ....++.  .....+..++.+...
T Consensus       221 ~-~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~  295 (351)
T cd08285         221 G-DVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGED----DYLPIPREEWGVGMGHKTINGGLC  295 (351)
T ss_pred             C-CHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCC----ceeecChhhhhhhccccEEEEeec
Confidence            6 788888888776 89999999996 5789999999999999999875531    1112221  112234445554332


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCcc---ceeeeccCCHHHHHHHhHcCC-CcCcEEEEe
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQPL---EDISNGVDSIPSAFTGFFRGD-NIGKKFVRI  220 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~~---~~~~~~l~~~~~a~~~~~~~~-~~gk~v~~~  220 (223)
                      ..    ..+.++++++++.+|.+++.   ...+++++++.+|++.+.+++ ..+|+++++
T Consensus       296 ~~----~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  351 (351)
T cd08285         296 PG----GRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF  351 (351)
T ss_pred             CC----ccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence            11    13567889999999999982   334579999999999999987 468999864

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.90  E-value=1.5e-21  Score=155.46  Aligned_cols=197  Identities=22%  Similarity=0.261  Sum_probs=163.8

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      .++++.++.++.|||+++....  .++++|+|+  |++|.+++|+|+..|++|+++..++++.+.++ ++|++.++++++
T Consensus       140 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~i~~~~  218 (345)
T cd08260         140 FVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELAR-ELGAVATVNASE  218 (345)
T ss_pred             HHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-HhCCCEEEcccc
Confidence            3478888999999999987665  889999999  99999999999999999999999999999998 899999998886


Q ss_pred             -cccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           89 -ETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 -~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                       . ++...+....++++|++|||+|+ ..+...+++++++|+++.+|......   .....++..++.+++++.++....
T Consensus       219 ~~-~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  294 (345)
T cd08260         219 VE-DVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEE---AGVALPMDRVVARELEIVGSHGMP  294 (345)
T ss_pred             ch-hHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCC---CccccCHHHHhhcccEEEeCCcCC
Confidence             5 67777777766689999999995 67889999999999999998755321   012344555667888888866543


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                           .+.++.+++++++|.+.+.  +...++++++++|++.+.++...||+|++
T Consensus       295 -----~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~  344 (345)
T cd08260         295 -----AHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT  344 (345)
T ss_pred             -----HHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence                 5678889999999998864  46678999999999999999999998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.90  E-value=1.2e-21  Score=155.86  Aligned_cols=202  Identities=21%  Similarity=0.219  Sum_probs=164.4

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH----HHHHHHHHhhCCCee
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN----EKVAILKEKLGFDDA   83 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~----~~~~~~~~~~g~~~~   83 (223)
                      +++++++++++.|||+++....  +++++|+|+   |++|++++|+|+..|++|+++++++    ++.+.++ ++|++.+
T Consensus       121 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~-~~g~~~~  199 (341)
T cd08290         121 PEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLK-ALGADHV  199 (341)
T ss_pred             HHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHH-hcCCCEE
Confidence            4588889999999999998765  899999999   8999999999999999999999776    5678887 8999999


Q ss_pred             eecCCc--ccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEe
Q 043295           84 FNYKEE--TDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQG  161 (223)
Q Consensus        84 ~~~~~~--~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g  161 (223)
                      +++++.  .++...++...++++|++|||+|+......+++++++|+++.+|.....     ....+...++.++.++.+
T Consensus       200 ~~~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~  274 (341)
T cd08290         200 LTEEELRSLLATELLKSAPGGRPKLALNCVGGKSATELARLLSPGGTMVTYGGMSGQ-----PVTVPTSLLIFKDITLRG  274 (341)
T ss_pred             EeCcccccccHHHHHHHHcCCCceEEEECcCcHhHHHHHHHhCCCCEEEEEeccCCC-----CcccCHHHHhhCCceEEE
Confidence            887652  1466667766655899999999998888899999999999999864431     123445566788999988


Q ss_pred             eeccCc-----cchHHHHHHHHHHHHHcCCCCccceeee---ccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          162 FLSTDH-----FDLHQDFISMTCDALRAGKIQPLEDISN---GVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       162 ~~~~~~-----~~~~~~~~~~~~~~~~~g~i~~~~~~~~---~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      +.....     +......+..+++++.+|.+.+....++   +++++.++++.+.++...||+|+.+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~  341 (341)
T cd08290         275 FWLTRWLKRANPEEKEDMLEELAELIREGKLKAPPVEKVTDDPLEEFKDALANALKGGGGGKQVLVM  341 (341)
T ss_pred             EecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCCcccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence            775432     2334457888999999999988766677   9999999999999988899999863

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.90  E-value=5.2e-22  Score=158.70  Aligned_cols=189  Identities=16%  Similarity=0.136  Sum_probs=144.1

Q ss_pred             hhhccccchhhHHHHHHHHh--------hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEec---CHHHHHHHHHhhCCC
Q 043295           15 FANGAGTSGFTAYVGFYEIS--------QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAG---TNEKVAILKEKLGFD   81 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~--------~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~---~~~~~~~~~~~~g~~   81 (223)
                      +++++..++.++++++....        +++++|+|+  |++|++++|+|+..|++|+++++   ++++++.++ ++|++
T Consensus       143 ~~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~-~~Ga~  221 (355)
T cd08230         143 DVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE-ELGAT  221 (355)
T ss_pred             cceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCE
Confidence            45666677777666554321        589999999  99999999999999999999987   678999998 99998


Q ss_pred             eeeecCCcccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCc----hHHHHhhc
Q 043295           82 DAFNYKEETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPN----MIDIVYKR  156 (223)
Q Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~  156 (223)
                      . +++.+. ++.+ .+  ..+++|++|||+|+ ..+..++++++++|+++.+|...+.    ....++    ...++.++
T Consensus       222 ~-v~~~~~-~~~~-~~--~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~----~~~~~~~~~~~~~~~~k~  292 (355)
T cd08230         222 Y-VNSSKT-PVAE-VK--LVGEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGG----REFEVDGGELNRDLVLGN  292 (355)
T ss_pred             E-ecCCcc-chhh-hh--hcCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCC----CccccChhhhhhhHhhcC
Confidence            6 466554 4443 21  22489999999997 4788999999999999999976541    111222    34667799


Q ss_pred             ceEEeeeccCccchHHHHHHHHHHHHHcCC------CCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          157 IKIQGFLSTDHFDLHQDFISMTCDALRAGK------IQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       157 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~------i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      +++.|+....     .+.++++++++.++.      +++.++.+++++++.+||+.+.++.  +|+|+++
T Consensus       293 ~~i~g~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~--~K~v~~~  355 (355)
T cd08230         293 KALVGSVNAN-----KRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE--IKVVIEW  355 (355)
T ss_pred             cEEEEecCCc-----hhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC--eEEEeeC
Confidence            9999986554     345677788887765      6667888999999999999887554  5999875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.90  E-value=1.2e-21  Score=159.38  Aligned_cols=177  Identities=23%  Similarity=0.245  Sum_probs=144.5

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCC---eEEEEecCHHHHHHHHHhh--------CCC-eeeecCCcccHHHHHHHh
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGC---YVVGSAGTNEKVAILKEKL--------GFD-DAFNYKEETDLKATLKRY   99 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~---~v~~~~~~~~~~~~~~~~~--------g~~-~~~~~~~~~~~~~~i~~~   99 (223)
                      ++|++|+|+   |++|++++|+|+..|+   +|++++.++++++.++ ++        |++ .++++.+.+++.+.+++.
T Consensus       174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~-~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~  252 (410)
T cd08238         174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQ-RLFPPEAASRGIELLYVNPATIDDLHATLMEL  252 (410)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHH-HhccccccccCceEEEECCCccccHHHHHHHH
Confidence            889999999   8999999999999864   7999999999999999 76        665 567765422688888888


Q ss_pred             CCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccchHHHHHHH
Q 043295          100 FPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISM  177 (223)
Q Consensus       100 ~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  177 (223)
                      +++ ++|++||++|+ +.+..++++++++|+++.++.....   .....+++..++.+++++.|+....     ...+++
T Consensus       253 t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~---~~~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~  324 (410)
T cd08238         253 TGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDK---NFSAPLNFYNVHYNNTHYVGTSGGN-----TDDMKE  324 (410)
T ss_pred             hCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCC---CccccccHHHhhhcCcEEEEeCCCC-----HHHHHH
Confidence            887 99999999985 7889999999999988876542211   0123456677888999999977544     456888


Q ss_pred             HHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          178 TCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       178 ~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      +++++.+|++++  .++.+|+|+++.+|++.+. ++..||+|+.++
T Consensus       325 ~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~~gKvvl~~~  369 (410)
T cd08238         325 AIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIPGGKKLIYTQ  369 (410)
T ss_pred             HHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccCCceEEEECC
Confidence            999999999998  4788899999999999999 777899999873

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.90  E-value=2.6e-21  Score=153.43  Aligned_cols=196  Identities=21%  Similarity=0.349  Sum_probs=168.4

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +.+++.++.++.+||+++....  +++++|+|+  |++|.+++++|+..|++|+++++++++.+.++ ++|.+.++++..
T Consensus       135 ~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~  213 (336)
T cd08276         135 FEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAK-ALGADHVINYRT  213 (336)
T ss_pred             HHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEcCCc
Confidence            3477888889999999998776  899999999  89999999999999999999999999999998 789999988776


Q ss_pred             -cccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           89 -ETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 -~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                       . ++.+.+++.+++ ++|+++|++++.....++.+++++|+++.+|.....     ....+...++.++.++.++....
T Consensus       214 ~~-~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  287 (336)
T cd08276         214 TP-DWGEEVLKLTGGRGVDHVVEVGGPGTLAQSIKAVAPGGVISLIGFLSGF-----EAPVLLLPLLTKGATLRGIAVGS  287 (336)
T ss_pred             cc-CHHHHHHHHcCCCCCcEEEECCChHHHHHHHHhhcCCCEEEEEccCCCC-----ccCcCHHHHhhcceEEEEEecCc
Confidence             4 688888888887 999999999988899999999999999999875542     11345567788999999887654


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                           .+.+.++++++.++.+.+.....++++++.++++.+.++...+|+++++
T Consensus       288 -----~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  336 (336)
T cd08276         288 -----RAQFEAMNRAIEAHRIRPVIDRVFPFEEAKEAYRYLESGSHFGKVVIRV  336 (336)
T ss_pred             -----HHHHHHHHHHHHcCCcccccCcEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence                 5678888999999998877777889999999999999888889999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.90  E-value=1.3e-21  Score=154.57  Aligned_cols=200  Identities=22%  Similarity=0.305  Sum_probs=153.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh-----hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-----QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF   84 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-----~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~   84 (223)
                      +++++.+++++.|||+++....     .++++|+|+   |++|.+++|+|+..|++|+++++++++.+.++ ++|++.++
T Consensus       118 ~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~  196 (326)
T cd08289         118 LKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLK-KLGAKEVI  196 (326)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHH-HcCCCEEE
Confidence            4578889999999999886543     357899999   89999999999999999999999999999998 89998888


Q ss_pred             ecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           85 NYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        85 ~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      ++++.  ..+.++...++++|+++||+|+..+...+++++++|+++.+|.....     ..+.++..++.++.++.++..
T Consensus       197 ~~~~~--~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~i~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~  269 (326)
T cd08289         197 PREEL--QEESIKPLEKQRWAGAVDPVGGKTLAYLLSTLQYGGSVAVSGLTGGG-----EVETTVFPFILRGVNLLGIDS  269 (326)
T ss_pred             cchhH--HHHHHHhhccCCcCEEEECCcHHHHHHHHHHhhcCCEEEEEeecCCC-----CCCcchhhhhhccceEEEEEe
Confidence            87653  34556666444899999999998899999999999999999976321     123335556688899888754


Q ss_pred             cCc-cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          165 TDH-FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       165 ~~~-~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ... .....+.+..+.+.+..+.+.+.+..+++++++.+||+.+.+++..||+|+++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~  326 (326)
T cd08289         270 VECPMELRRRIWRRLATDLKPTQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL  326 (326)
T ss_pred             EecCchHHHHHHHHHHhhcCccccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence            321 11223344444444433333445677889999999999999999999999864

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.89  E-value=3e-21  Score=151.98  Aligned_cols=196  Identities=21%  Similarity=0.239  Sum_probs=158.1

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++++++.++.|||+++....  +++++|+|+   |++|.+++|+|+..|++|++++.++++.+.++ ++|++.+++. 
T Consensus       117 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~-  194 (320)
T cd08243         117 WAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLK-ELGADEVVID-  194 (320)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCcEEEec-
Confidence            4478999999999999998876  889999999   89999999999999999999999999999998 8999888754 


Q ss_pred             CcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHH--HHhhcceEEeeecc
Q 043295           88 EETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMID--IVYKRIKIQGFLST  165 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~  165 (223)
                      .. ++.+.+++. ++++|+++||+|+..+...+++++++|+++.+|......   .........  .+.++.++.++...
T Consensus       195 ~~-~~~~~i~~~-~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  269 (320)
T cd08243         195 DG-AIAEQLRAA-PGGFDKVLELVGTATLKDSLRHLRPGGIVCMTGLLGGQW---TLEDFNPMDDIPSGVNLTLTGSSSG  269 (320)
T ss_pred             Cc-cHHHHHHHh-CCCceEEEECCChHHHHHHHHHhccCCEEEEEccCCCCc---ccCCcchhhhhhhccceEEEecchh
Confidence            43 677778777 458999999999988999999999999999999754321   000111122  23566666665543


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          166 DHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                      ..   ....++.+++++.++.+++.+...++++++.+|++.+.++...||+|+
T Consensus       270 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvvv  319 (320)
T cd08243         270 DV---PQTPLQELFDFVAAGHLDIPPSKVFTFDEIVEAHAYMESNRAFGKVVV  319 (320)
T ss_pred             hh---hHHHHHHHHHHHHCCceecccccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence            21   235678899999999998877778899999999999999888899886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.89  E-value=2.4e-21  Score=155.36  Aligned_cols=198  Identities=24%  Similarity=0.305  Sum_probs=162.3

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++.++.+++++.|||+++....  +++++|+|+  |++|.+++|+|+..|+ +|++++.++++.+.++ ++|++.++++.
T Consensus       161 ~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~-~~g~~~~i~~~  239 (365)
T cd08278         161 LELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAK-ELGATHVINPK  239 (365)
T ss_pred             HHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HcCCcEEecCC
Confidence            4578999999999999987765  889999999  9999999999999999 6999999999999888 89999999988


Q ss_pred             CcccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      +. ++.+.+.+.+++++|+++||+|+ ..+..++++++++|+++.+|.....    .....+...++.++.++.++....
T Consensus       240 ~~-~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  314 (365)
T cd08278         240 EE-DLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPG----AEVTLDVNDLLVSGKTIRGVIEGD  314 (365)
T ss_pred             Cc-CHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCC----CccccCHHHHhhcCceEEEeecCC
Confidence            76 78888888774499999999985 6789999999999999999975321    122455666667888888776533


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCc-cceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          167 HFDLHQDFISMTCDALRAGKIQP-LEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~-~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      .  ...+.++++++++++|.+++ .+...++++++.+|++.+.+++.. |+|++
T Consensus       315 ~--~~~~~~~~~~~~l~~g~l~~~~~~~~~~l~~~~~a~~~~~~~~~~-k~~~~  365 (365)
T cd08278         315 S--VPQEFIPRLIELYRQGKFPFDKLVTFYPFEDINQAIADSESGKVI-KPVLR  365 (365)
T ss_pred             c--ChHHHHHHHHHHHHcCCCChHHheEEecHHHHHHHHHHHHCCCce-EEEEC
Confidence            1  12466788999999999865 345578999999999999887765 88774

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.89  E-value=3.3e-21  Score=152.99  Aligned_cols=193  Identities=24%  Similarity=0.346  Sum_probs=161.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++++.++.++.|||+++....  +++++|||.  |++|.+++|+|+..|++|++++.++++.+.++ ++|.+.++++.+
T Consensus       140 ~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~-~~g~~~~~~~~~  218 (338)
T cd08254         140 FAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAK-ELGADEVLNSLD  218 (338)
T ss_pred             HHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HhCCCEEEcCCC
Confidence            4478889999999999998776  889999999  88999999999999999999999999999998 899988888776


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      . .+.+.+ ...++ ++|+++||+|. +.+..++++|+++|+++.+|....      ....+...++.++.++.++....
T Consensus       219 ~-~~~~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~  290 (338)
T cd08254         219 D-SPKDKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRD------KLTVDLSDLIARELRIIGSFGGT  290 (338)
T ss_pred             c-CHHHHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCC------CCccCHHHHhhCccEEEEeccCC
Confidence            5 666666 44454 89999999985 688999999999999999986432      12344566777888888765443


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                           .+.+..+++++++|.+++. ...++++++.++++.+.+++..||+|+++
T Consensus       291 -----~~~~~~~~~ll~~~~l~~~-~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  338 (338)
T cd08254         291 -----PEDLPEVLDLIAKGKLDPQ-VETRPLDEIPEVLERLHKGKVKGRVVLVP  338 (338)
T ss_pred             -----HHHHHHHHHHHHcCCCccc-ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence                 5678889999999999877 56789999999999999999999999874

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.89  E-value=4.2e-21  Score=150.84  Aligned_cols=200  Identities=21%  Similarity=0.263  Sum_probs=165.3

Q ss_pred             hhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           14 VFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      .++++++..+.++|+++....  +++++|+|+   |++|.+++++++..|++|++++.++++.+.++ ++|++.+++..+
T Consensus       112 ~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~  190 (320)
T cd05286         112 ETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELAR-AAGADHVINYRD  190 (320)
T ss_pred             HHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HCCCCEEEeCCc
Confidence            467788999999999998766  889999999   89999999999999999999999999999998 899988888776


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      . ++.+.++..+++ ++|+++||+++......+++++++|+++.+|.....     ....+...+..+++++.++....+
T Consensus       191 ~-~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  264 (320)
T cd05286         191 E-DFVERVREITGGRGVDVVYDGVGKDTFEGSLDSLRPRGTLVSFGNASGP-----VPPFDLLRLSKGSLFLTRPSLFHY  264 (320)
T ss_pred             h-hHHHHHHHHcCCCCeeEEEECCCcHhHHHHHHhhccCcEEEEEecCCCC-----CCccCHHHHHhcCcEEEEEehhhh
Confidence            5 788888888876 899999999998888999999999999999865431     112334444477888776553322


Q ss_pred             ---cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          168 ---FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       168 ---~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                         +....+.+..+++++.++.+.+.....++++++.++++.+.++...+|+|+++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~~  320 (320)
T cd05286         265 IATREELLARAAELFDAVASGKLKVEIGKRYPLADAAQAHRDLESRKTTGKLLLIP  320 (320)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCCcCcccceEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence               33445667789999999999877777889999999999999988889999863

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.89  E-value=3.8e-21  Score=152.71  Aligned_cols=194  Identities=24%  Similarity=0.270  Sum_probs=158.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      +++++.+ ..+.|+++++.... +++++|||+  |.+|.+++|+|+..|++|+++..++++.+.++ ++|+++++++.+.
T Consensus       136 ~~~aa~~-~~~~~a~~~~~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~-~~g~~~v~~~~~~  213 (337)
T cd08261         136 LDQAALV-EPLAIGAHAVRRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAR-ELGADDTINVGDE  213 (337)
T ss_pred             HHHhhhh-chHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHH-HhCCCEEecCccc
Confidence            3456555 67788998883333 899999999  88999999999999999999998999999998 8999999998886


Q ss_pred             ccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           90 TDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        90 ~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                       ++.+.+.+.+++ ++|+++||+|+ ..+..++++++++|+++.+|....      ....+...+..+++++.+....  
T Consensus       214 -~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~--  284 (337)
T cd08261         214 -DVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKG------PVTFPDPEFHKKELTILGSRNA--  284 (337)
T ss_pred             -CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCC------CCccCHHHHHhCCCEEEEeccC--
Confidence             788888888877 89999999986 678899999999999999986542      1133444556677777765322  


Q ss_pred             cchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcC-CCcCcEEEEe
Q 043295          168 FDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRG-DNIGKKFVRI  220 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~-~~~gk~v~~~  220 (223)
                         ..+.++.+++++++|.+++  .+..+++++++.++++.+.++ ...+|+|+++
T Consensus       285 ---~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~  337 (337)
T cd08261         285 ---TREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF  337 (337)
T ss_pred             ---ChhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence               2567888999999999998  666788999999999999988 4789999875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.89  E-value=7.9e-22  Score=152.71  Aligned_cols=175  Identities=17%  Similarity=0.212  Sum_probs=142.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++++.+++++.|||+++.+.. .++++|+|+  |++|++++|+|+..|++ |++++.++++++.++ ++|++.++++.+
T Consensus        96 ~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~-~~Ga~~~i~~~~  174 (280)
T TIGR03366        96 DAVAAPAGCATATVMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELAL-SFGATALAEPEV  174 (280)
T ss_pred             HHHhhHhhhHHHHHHHHHHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HcCCcEecCchh
Confidence            4578888889999999998777 899999999  99999999999999996 999988999999999 999999887643


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                         ..+.+++.+++ ++|++|||+|+ ..+..++++++++|+++.+|.....    ...++++..++.+++++.|+....
T Consensus       175 ---~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~----~~~~i~~~~~~~~~~~i~g~~~~~  247 (280)
T TIGR03366       175 ---LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPG----GPVALDPEQVVRRWLTIRGVHNYE  247 (280)
T ss_pred             ---hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCC----CceeeCHHHHHhCCcEEEecCCCC
Confidence               34566667766 89999999986 5688999999999999999965321    122456778888999999987654


Q ss_pred             ccchHHHHHHHHHHHHHcC--CCC--ccceeeeccCCH
Q 043295          167 HFDLHQDFISMTCDALRAG--KIQ--PLEDISNGVDSI  200 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g--~i~--~~~~~~~~l~~~  200 (223)
                           .+.++++++++.++  .++  +.++++|||+++
T Consensus       248 -----~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       248 -----PRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             -----HHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence                 46688899999875  444  447778888763

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.89  E-value=3.2e-21  Score=152.64  Aligned_cols=203  Identities=33%  Similarity=0.536  Sum_probs=163.3

Q ss_pred             hhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           14 VFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      .++++++.++.|||+++.+..  +++++++|+   |++|.+++|+|+..|++|+++++++++.+.++ ++|++.+++..+
T Consensus       115 ~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~  193 (329)
T cd08250         115 PEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLK-SLGCDRPINYKT  193 (329)
T ss_pred             chhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHH-HcCCceEEeCCC
Confidence            367889999999999998776  899999999   89999999999999999999999999999998 899988888776


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccc-----cCCCCchHHHHhhcceEEeee
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADAS-----KRAVPNMIDIVYKRIKIQGFL  163 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~  163 (223)
                      . ++.+.+.+..++++|+++|++|+..+...+++++++|+++.+|.........     ....+ ....+.++.++.++.
T Consensus       194 ~-~~~~~~~~~~~~~vd~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  271 (329)
T cd08250         194 E-DLGEVLKKEYPKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATL-PPKLLAKSASVRGFF  271 (329)
T ss_pred             c-cHHHHHHHhcCCCCeEEEECCcHHHHHHHHHHhccCCeEEEEecccCCcccCcccccccccc-cHHHhhcCceEEEEE
Confidence            5 6777777665558999999999988999999999999999998764321000     00111 234567888888877


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          164 STDHFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      ...+.....+.+..+++++.+|.+.+.  ....++++++.+|++.+.++...||+|++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  329 (329)
T cd08250         272 LPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNIGKVVVE  329 (329)
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence            654323346678889999999999874  33457999999999999988888999874

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.89  E-value=4.4e-21  Score=151.71  Aligned_cols=200  Identities=19%  Similarity=0.184  Sum_probs=157.3

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++++.++..+.|||+++....  +++++++|+   |.+|++++|+|+..|++|+++++++++.+.++ ++|++.+++..
T Consensus       115 ~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~  193 (327)
T PRK10754        115 FEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAK-KAGAWQVINYR  193 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HCCCCEEEcCC
Confidence            4477788889999999987766  899999999   89999999999999999999999999999998 89998888887


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceE-Eeeecc
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKI-QGFLST  165 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~  165 (223)
                      +. ++.+.++..+++ ++|+++||+|+......+.+++++|+++.+|.....     ....+...+..++... ......
T Consensus       194 ~~-~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  267 (327)
T PRK10754        194 EE-NIVERVKEITGGKKVRVVYDSVGKDTWEASLDCLQRRGLMVSFGNASGP-----VTGVNLGILNQKGSLYVTRPSLQ  267 (327)
T ss_pred             CC-cHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHhccCCEEEEEccCCCC-----CCCcCHHHHhccCceEEecceee
Confidence            76 788889988887 999999999998888999999999999999876421     1122222222222111 111111


Q ss_pred             Cc---cchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          166 DH---FDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       166 ~~---~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      .+   +....+.+..+++++.+|.+++.  ...+++++++.++++.+.++...||+|+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  326 (327)
T PRK10754        268 GYITTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSSLLI  326 (327)
T ss_pred             cccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceEEEe
Confidence            11   22334567778999999999864  45788999999999999999889999986

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.89  E-value=5.3e-21  Score=151.94  Aligned_cols=195  Identities=22%  Similarity=0.269  Sum_probs=158.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHH-cCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKL-GGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~-~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +.++++++.++.|||+++.... +++++|+|+  |++|.+++|+|+. .|++|+++++++++++.++ ++|++.++++++
T Consensus       138 ~~~aa~l~~~~~ta~~~~~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~  216 (338)
T PRK09422        138 PAQASSITCAGVTTYKAIKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAK-EVGADLTINSKR  216 (338)
T ss_pred             HHHeehhhcchhHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH-HcCCcEEecccc
Confidence            4588899999999999984444 899999999  9999999999998 4999999999999999998 899999998864


Q ss_pred             cccHHHHHHHhCCCCcc-EEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPDGID-VYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d-~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      ..++.+.+++.++ ++| +++++.+++.+..++++++++|+++.+|....      ...++......+..++.++.... 
T Consensus       217 ~~~~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~-  288 (338)
T PRK09422        217 VEDVAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPE------SMDLSIPRLVLDGIEVVGSLVGT-  288 (338)
T ss_pred             cccHHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCC------CceecHHHHhhcCcEEEEecCCC-
Confidence            2266777877766 688 55666667889999999999999999986532      12334555666777776654333 


Q ss_pred             cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          168 FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                          .+.++.+++++++|.+.+.+. .++++++.+|++.+.++...||+|+.+.
T Consensus       289 ----~~~~~~~~~l~~~g~l~~~v~-~~~~~~~~~a~~~~~~~~~~gkvvv~~~  337 (338)
T PRK09422        289 ----RQDLEEAFQFGAEGKVVPKVQ-LRPLEDINDIFDEMEQGKIQGRMVIDFT  337 (338)
T ss_pred             ----HHHHHHHHHHHHhCCCCccEE-EEcHHHHHHHHHHHHcCCccceEEEecC
Confidence                456888999999999987654 5799999999999999999999999763

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.89  E-value=4.6e-21  Score=152.63  Aligned_cols=193  Identities=19%  Similarity=0.186  Sum_probs=158.3

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++++++.++.|||+++.... +++++|+|+  |++|.+++|+|+..|+ +|++++.++++.+.++ ++|+. .++++.
T Consensus       143 ~~~a~~l~~~~~ta~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~~~~~~  220 (344)
T cd08284         143 DEAALLLGDILPTGYFGAKRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAA-ALGAE-PINFED  220 (344)
T ss_pred             HHHhhhhcCchHHHHhhhHhcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-HhCCe-EEecCC
Confidence            4588889999999999997755 889999999  9999999999999997 8999988888888888 89975 466666


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      . ++...+.+.+++ ++|++|||+|+ ......+++++++|+++.+|.....     .........+.+++++.+.... 
T Consensus       221 ~-~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-  293 (344)
T cd08284         221 A-EPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAE-----EFPFPGLDAYNKNLTLRFGRCP-  293 (344)
T ss_pred             c-CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCC-----CccccHHHHhhcCcEEEEecCC-
Confidence            5 788888888876 99999999996 6788999999999999999976532     1223445667788887654211 


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                          ..+.++++++++.++.+++.  +..+++++++.++++.+.+++. ||+|++
T Consensus       294 ----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~Vi~  343 (344)
T cd08284         294 ----VRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKV-LKVVLD  343 (344)
T ss_pred             ----cchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCc-eEEEec
Confidence                25678889999999999863  5677899999999999988777 999985

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.89  E-value=8.9e-22  Score=154.35  Aligned_cols=175  Identities=11%  Similarity=0.101  Sum_probs=136.1

Q ss_pred             ccchhhHHHHHHHHhhCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHH
Q 043295           20 GTSGFTAYVGFYEISQKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATL   96 (223)
Q Consensus        20 ~~~~~ta~~~l~~~~~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i   96 (223)
                      ..++.|||+++.+...++++++|+  |++|++++|+|+.+|++ |++++.++++++.+. .+   .++|+.+  .     
T Consensus       128 ~~~~~~a~~~~~~~~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~-~~---~~i~~~~--~-----  196 (308)
T TIGR01202       128 LALAATARHAVAGAEVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT-GY---EVLDPEK--D-----  196 (308)
T ss_pred             hhHHHHHHHHHHhcccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh-hc---cccChhh--c-----
Confidence            345789999997644568899999  99999999999999996 556666666766555 32   4454422  1     


Q ss_pred             HHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccchHHHHH
Q 043295           97 KRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFI  175 (223)
Q Consensus        97 ~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  175 (223)
                         .++++|++|||+|+. .+..++++++++|+++.+|....      ...+++..++.+++++.++....     .+.+
T Consensus       197 ---~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i~~~~~~~-----~~~~  262 (308)
T TIGR01202       197 ---PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTE------PVNFDFVPAFMKEARLRIAAEWQ-----PGDL  262 (308)
T ss_pred             ---cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCC------CcccccchhhhcceEEEEecccc-----hhHH
Confidence               123799999999984 68999999999999999997542      12345556777888888766544     5678


Q ss_pred             HHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          176 SMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       176 ~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      +++++++++|.+++.  ++.++||+++.+||+.+.++...+|++++
T Consensus       263 ~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~  308 (308)
T TIGR01202       263 HAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD  308 (308)
T ss_pred             HHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence            999999999999864  78889999999999998877777899874

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.89  E-value=2.6e-21  Score=153.64  Aligned_cols=189  Identities=21%  Similarity=0.204  Sum_probs=158.3

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      +++++.+++.+.|||+++.+.. +++++++|.  |++|++++|+|+..|++|+++++++++.+.++ ++|++.+++....
T Consensus       145 ~~~aa~l~~~~~ta~~~~~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~  223 (337)
T cd05283         145 SAAAAPLLCAGITVYSPLKRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDAL-KLGADEFIATKDP  223 (337)
T ss_pred             HHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCcEEecCcch
Confidence            3478889999999999998777 899999999  99999999999999999999999999999998 8999988877654


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCcc
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  168 (223)
                       ++...    .++++|+++||+|+. ....++++++++|+++.+|.....      ..+++..++.++.++.++....  
T Consensus       224 -~~~~~----~~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~i~~~~~~~--  290 (337)
T cd05283         224 -EAMKK----AAGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEP------LPVPPFPLIFGRKSVAGSLIGG--  290 (337)
T ss_pred             -hhhhh----ccCCceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCC------CccCHHHHhcCceEEEEecccC--
Confidence             33221    234899999999986 588999999999999999875431      1345566677899999887665  


Q ss_pred             chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          169 DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                         .+.++.+++++++|.+++.+ ..++++++.+||+.+.+++..||+|++
T Consensus       291 ---~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~  337 (337)
T cd05283         291 ---RKETQEMLDFAAEHGIKPWV-EVIPMDGINEALERLEKGDVRYRFVLD  337 (337)
T ss_pred             ---HHHHHHHHHHHHhCCCccce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence               56788899999999998764 578999999999999999999999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.89  E-value=3.7e-21  Score=155.33  Aligned_cols=197  Identities=19%  Similarity=0.191  Sum_probs=158.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++++++.++.|||+++.... +++++|+|+  |++|.+++|+|+..|+ +|++++.++++.+.++ +++...++++..
T Consensus       160 ~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~-~~~~~~vi~~~~  238 (386)
T cd08283         160 DEKALFLSDILPTGYHAAELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMAR-SHLGAETINFEE  238 (386)
T ss_pred             HHHHhhhccchhhhHHHHhhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcCCcEEEcCCc
Confidence            4578889999999999994333 889999999  8999999999999998 6999999999999999 774446777765


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh----------------------HHHHHHHHhhccCcEEEEEcccccccccccCC
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG----------------------EMLEAAVANMNLFGRVAACGVISECADASKRA  145 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~----------------------~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  145 (223)
                      .+++.+.+++.+++ ++|++|||+|+                      ..+..++++++++|+++.+|.....     ..
T Consensus       239 ~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~  313 (386)
T cd08283         239 VDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGT-----VN  313 (386)
T ss_pred             chHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCC-----cC
Confidence            41378888888877 89999999975                      2578899999999999999865431     12


Q ss_pred             CCchHHHHhhcceEEeeeccCccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCC-CcCcEEEEe
Q 043295          146 VPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGD-NIGKKFVRI  220 (223)
Q Consensus       146 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~-~~gk~v~~~  220 (223)
                      ..+....+.++.++.+.....     .+.+..+++++++|.+.+.  +..+++++++.+|++.+.++. ..+|+|+++
T Consensus       314 ~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  386 (386)
T cd08283         314 KFPIGAAMNKGLTLRMGQTHV-----QRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVLKP  386 (386)
T ss_pred             ccCHHHHHhCCcEEEeccCCc-----hHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            344556678888888865332     5678889999999999874  556789999999999998877 568999863

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.89  E-value=1.9e-21  Score=154.59  Aligned_cols=181  Identities=16%  Similarity=0.142  Sum_probs=138.9

Q ss_pred             hhccccchhhHHHHHHHHh----hCCCEEEEE--CchHHHHHHHHHH-cC-CeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           16 ANGAGTSGFTAYVGFYEIS----QKGEKVFVS--GAYGHLVGQYAKL-GG-CYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        16 aa~l~~~~~ta~~~l~~~~----~~g~~vlI~--g~vG~~a~qla~~-~g-~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      .|+++.++.|+|+++.+..    ++|++|+|.  |++|++++|+++. .| .+|++++++++|++.++ +.+.+..++  
T Consensus       139 ~aa~~~~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~-~~~~~~~~~--  215 (341)
T cd08237         139 VAAFTELVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS-FADETYLID--  215 (341)
T ss_pred             HhhhhchHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh-hcCceeehh--
Confidence            4557779999999987542    789999999  9999999999996 55 58999999999999998 666543321  


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCCh----HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEee
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGG----EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGF  162 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~----~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  162 (223)
                         ++.       .+ ++|+||||+|+    ..+..++++++++|+++.+|....      ...++...++.+++++.|+
T Consensus       216 ---~~~-------~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~k~~~i~g~  279 (341)
T cd08237         216 ---DIP-------EDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEY------PVPINTRMVLEKGLTLVGS  279 (341)
T ss_pred             ---hhh-------hccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCC------CcccCHHHHhhCceEEEEe
Confidence               111       22 69999999994    468899999999999999996532      2245566778899999988


Q ss_pred             eccCccchHHHHHHHHHHHHHcC-----CCCccceeeeccCC---HHHHHHHhHcCCCcCcEEEEec
Q 043295          163 LSTDHFDLHQDFISMTCDALRAG-----KIQPLEDISNGVDS---IPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~g-----~i~~~~~~~~~l~~---~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      ....     .+.++++++++.+|     .+++.++++|++++   +.++++.+.++ ..||+|+.++
T Consensus       280 ~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~-~~gKvvi~~~  340 (341)
T cd08237         280 SRST-----REDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTN-SWGKTVMEWE  340 (341)
T ss_pred             cccC-----HHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhc-CcceEEEEee
Confidence            6543     45688899999998     56777888898865   55555555444 6799999875

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.89  E-value=7.3e-21  Score=150.20  Aligned_cols=198  Identities=22%  Similarity=0.329  Sum_probs=156.4

Q ss_pred             hhhhhccccchhhHHHHHHHHh----hCCC-EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS----QKGE-KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF   84 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~----~~g~-~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~   84 (223)
                      +++++.++..+.|||.++....    .+++ +|+|+   |++|.+++|+|+..|+++++++.++++.+.++ ++|++.++
T Consensus       117 ~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~  195 (323)
T TIGR02823       117 LREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLK-ELGASEVI  195 (323)
T ss_pred             HHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-hcCCcEEE
Confidence            4578888999999988875543    6788 99999   89999999999999999999988888889998 89998888


Q ss_pred             ecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           85 NYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        85 ~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      +.++. +.  .++...++++|+++||+|++.+..++++++++|+++.+|.....     ....+...++.++.++.++..
T Consensus       196 ~~~~~-~~--~~~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~  267 (323)
T TIGR02823       196 DREDL-SP--PGKPLEKERWAGAVDTVGGHTLANVLAQLKYGGAVAACGLAGGP-----DLPTTVLPFILRGVSLLGIDS  267 (323)
T ss_pred             ccccH-HH--HHHHhcCCCceEEEECccHHHHHHHHHHhCCCCEEEEEcccCCC-----CccccHHHHhhcceEEEEEec
Confidence            77543 22  44555544799999999998889999999999999999976431     123344556678888888764


Q ss_pred             cCc-cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          165 TDH-FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       165 ~~~-~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ... .....+.+..+.+++..+.+.+. ...++++++++|++.+.+++..||+|+++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~a~~~~~~~~~~~k~vv~~  323 (323)
T TIGR02823       268 VYCPMALREAAWQRLATDLKPRNLESI-TREITLEELPEALEQILAGQHRGRTVVDV  323 (323)
T ss_pred             cccCchhHHHHHHHHHHHhhcCCCcCc-eeeecHHHHHHHHHHHhCCCccceEEEeC
Confidence            422 22334556777888888988765 45789999999999999999999999864

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.89  E-value=4.7e-21  Score=151.34  Aligned_cols=199  Identities=21%  Similarity=0.329  Sum_probs=155.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh----h-CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS----Q-KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF   84 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~----~-~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~   84 (223)
                      +++++.+++.+.|||+++....    . .+++|+|+   |++|++++|+|+..|++|+++++++++.+.++ ++|++.++
T Consensus       118 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~  196 (325)
T cd05280         118 LREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLK-SLGASEVL  196 (325)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCcEEE
Confidence            4578899999999999987654    3 35799999   89999999999999999999999999999998 89999888


Q ss_pred             ecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           85 NYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        85 ~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      ++++.  .....+...++++|+++||+|+..+..++++++++|+++.+|.....+     ...++..++.++.++.++..
T Consensus       197 ~~~~~--~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~  269 (325)
T cd05280         197 DREDL--LDESKKPLLKARWAGAIDTVGGDVLANLLKQTKYGGVVASCGNAAGPE-----LTTTVLPFILRGVSLLGIDS  269 (325)
T ss_pred             cchhH--HHHHHHHhcCCCccEEEECCchHHHHHHHHhhcCCCEEEEEecCCCCc-----cccccchheeeeeEEEEEEe
Confidence            76542  122233333348999999999999999999999999999999764321     13344455578888888765


Q ss_pred             cCc-cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          165 TDH-FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       165 ~~~-~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ... +....+.++.+.+++..+.. +.+..+++++++.++++.+.+++..||+|+++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  325 (325)
T cd05280         270 VNCPMELRKQVWQKLATEWKPDLL-EIVVREISLEELPEAIDRLLAGKHRGRTVVKI  325 (325)
T ss_pred             ecCchhHHHHHHHHHHHHHhcCCc-cceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence            443 22334566777777777844 45677889999999999999999999999864

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.88  E-value=6.8e-21  Score=151.16  Aligned_cols=195  Identities=17%  Similarity=0.189  Sum_probs=154.1

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hC-----CCEEEEE---CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QK-----GEKVFVS---GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFD   81 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~-----g~~vlI~---g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~   81 (223)
                      +++++.+++++.|||+++....  ++     +++|+|+   |++|.+++|+|+.. |++|+++++++++.+.++ ++|++
T Consensus       118 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~-~~g~~  196 (336)
T TIGR02817       118 FAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVL-ELGAH  196 (336)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHH-HcCCC
Confidence            5688999999999999997665  55     8999999   89999999999998 999999999999999998 89999


Q ss_pred             eeeecCCcccHHHHHHHhCCCCccEEEcCCC-hHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEE
Q 043295           82 DAFNYKEETDLKATLKRYFPDGIDVYFDNVG-GEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQ  160 (223)
Q Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (223)
                      +++++..  ++.+.+++..++++|+++|+++ ++.....+++++++|+++.++...         ..+...+..++.++.
T Consensus       197 ~~~~~~~--~~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~~---------~~~~~~~~~~~~~~~  265 (336)
T TIGR02817       197 HVIDHSK--PLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALIDDPA---------ELDISPFKRKSISLH  265 (336)
T ss_pred             EEEECCC--CHHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccCCEEEEEcccc---------cccchhhhhcceEEE
Confidence            9998654  5777787754448999999986 478899999999999999875321         233444444556665


Q ss_pred             eeecc-C--c--cchH--HHHHHHHHHHHHcCCCCccceeee---ccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          161 GFLST-D--H--FDLH--QDFISMTCDALRAGKIQPLEDISN---GVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       161 g~~~~-~--~--~~~~--~~~~~~~~~~~~~g~i~~~~~~~~---~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      +.... .  +  +...  ...++++++++.+|.+++.+...+   +++++.+|++.+.+++..||+|++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  334 (336)
T TIGR02817       266 WEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTTLAETFGTINAANLKRAHALIESGKARGKIVLE  334 (336)
T ss_pred             EEEeecccccchhhhhhhHHHHHHHHHHHHCCCeeccchhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence            53322 1  1  1111  256888999999999987765555   468999999999999988999875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.88  E-value=4.2e-21  Score=153.03  Aligned_cols=196  Identities=22%  Similarity=0.200  Sum_probs=158.1

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++++++.++.|||+++.... +++++|+|.  |++|.+++|+|+..|+ +|+++++++++.+.++ ++|++.++++++
T Consensus       143 ~~~aa~l~~~~~ta~~~~~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~  221 (347)
T cd05278         143 DEDALMLSDILPTGFHGAELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAK-EAGATDIINPKN  221 (347)
T ss_pred             HHHHhhhcchhhheeehhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HhCCcEEEcCCc
Confidence            4588889999999999984333 889999999  8899999999999997 8999988888888888 899999998887


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      . ++.+.++..+++ ++|++||++|+ ..+..++++++++|+++.+|......    . .......+.+++++.+.....
T Consensus       222 ~-~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~  295 (347)
T cd05278         222 G-DIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPD----P-LPLLGEWFGKNLTFKTGLVPV  295 (347)
T ss_pred             c-hHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCc----c-cCccchhhhceeEEEeeccCc
Confidence            6 788888888776 89999999997 68899999999999999998543211    0 011123346777776654322


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCC-cCcEEEEe
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDN-IGKKFVRI  220 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~-~gk~v~~~  220 (223)
                           .+.++++++++.+|.+++.  +...++++++.++++.+..+.. .+|+|+++
T Consensus       296 -----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~  347 (347)
T cd05278         296 -----RARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP  347 (347)
T ss_pred             -----hhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence                 5678889999999999864  4567899999999999988776 78998864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.88  E-value=7.5e-21  Score=148.93  Aligned_cols=192  Identities=22%  Similarity=0.252  Sum_probs=156.4

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++++++++.+.|||+++.... .++++++|+   |++|.+++|+|+..|++|+++++++++.+.++ ++|++.+++...
T Consensus       108 ~~~a~~~~~~~~ta~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~  186 (305)
T cd08270         108 FAQAATLPVAGVTALRALRRGGPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLR-ELGAAEVVVGGS  186 (305)
T ss_pred             HHHHHHhHhHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEeccc
Confidence            4588899999999999998877 669999999   79999999999999999999999999999999 799876554322


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHh--hcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVY--KRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~  166 (223)
                        +       ..++++|+++||+|+..+..++++++++|+++.+|....     .....+...+..  ++.++.++....
T Consensus       187 --~-------~~~~~~d~vl~~~g~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (305)
T cd08270         187 --E-------LSGAPVDLVVDSVGGPQLARALELLAPGGTVVSVGSSSG-----EPAVFNPAAFVGGGGGRRLYTFFLYD  252 (305)
T ss_pred             --c-------ccCCCceEEEECCCcHHHHHHHHHhcCCCEEEEEeccCC-----CcccccHHHHhcccccceEEEEEccC
Confidence              1       122479999999999888999999999999999986542     112334444443  578888877653


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                       +....+.+..+.+++.+|.+++.+..++++++++++++.+.++...||+|+++
T Consensus       253 -~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  305 (305)
T cd08270         253 -GEPLAADLARLLGLVAAGRLDPRIGWRGSWTEIDEAAEALLARRFRGKAVLDV  305 (305)
T ss_pred             -HHHHHHHHHHHHHHHHCCCccceeccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence             33345678889999999999987777889999999999999998899999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.88  E-value=1.1e-20  Score=150.33  Aligned_cols=192  Identities=23%  Similarity=0.216  Sum_probs=156.8

Q ss_pred             hhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           15 FANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      +++.+ .++.|||+++.... +++++|+|+  |++|.+++|+|+..|++ |++++.++++.+.++ ++|.+.++++++. 
T Consensus       144 ~aa~~-~~~~~a~~~l~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~-~~g~~~~~~~~~~-  220 (343)
T cd08235         144 EAALV-EPLACCINAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAK-KLGADYTIDAAEE-  220 (343)
T ss_pred             HHHhh-hHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCcEEecCCcc-
Confidence            55544 78899999996655 899999999  88999999999999998 999999999999998 8999999998877 


Q ss_pred             cHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCcc
Q 043295           91 DLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        91 ~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  168 (223)
                      ++.+.++..+++ ++|+++||+++ ..+...+++++++|+++.+|.....    .....+......+++.+.++....  
T Consensus       221 ~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~--  294 (343)
T cd08235         221 DLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKG----STVNIDPNLIHYREITITGSYAAS--  294 (343)
T ss_pred             CHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCC----CCcccCHHHHhhCceEEEEEecCC--
Confidence            788888888877 89999999996 5788999999999999998864432    112334455566777776655443  


Q ss_pred             chHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          169 DLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                         .+.++.+++++++|.+++  .+..+++++++.++++.+.+++ .||+|+.
T Consensus       295 ---~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~vi~  343 (343)
T cd08235         295 ---PEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGK-SLKIVIT  343 (343)
T ss_pred             ---hhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCC-cEEEEeC
Confidence               456788899999999874  3556789999999999999998 8899873

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.88  E-value=1.3e-20  Score=151.76  Aligned_cols=196  Identities=18%  Similarity=0.161  Sum_probs=155.9

Q ss_pred             hhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           15 FANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      .+++++.++.|||+++.... ++|++|+|+  |++|++++|+|+..|+ +|+++++++++.+.++ ++|+ ..+++.+. 
T Consensus       154 ~~a~~~~~~~ta~~a~~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~-~~g~-~~v~~~~~-  230 (375)
T cd08282         154 DYLMLSDIFPTGWHGLELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAE-SIGA-IPIDFSDG-  230 (375)
T ss_pred             heeeecchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HcCC-eEeccCcc-
Confidence            46778889999999994444 889999999  9999999999999998 8999988999999998 8998 45677765 


Q ss_pred             cHHHHHHHhCCCCccEEEcCCChH------------HHHHHHHhhccCcEEEEEcccccccccc-------cCCCCchHH
Q 043295           91 DLKATLKRYFPDGIDVYFDNVGGE------------MLEAAVANMNLFGRVAACGVISECADAS-------KRAVPNMID  151 (223)
Q Consensus        91 ~~~~~i~~~~~~~~d~vid~~g~~------------~~~~~~~~l~~~G~~v~~g~~~~~~~~~-------~~~~~~~~~  151 (223)
                      ++.+.+.+.+++++|+++||+|+.            .+..++++++++|+++.+|.........       ....++...
T Consensus       231 ~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  310 (375)
T cd08282         231 DPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGL  310 (375)
T ss_pred             cHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHH
Confidence            788888877766899999999875            4788999999999999887643211100       112345556


Q ss_pred             HHhhcceEEeeeccCccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          152 IVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       152 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      ++.++..+.+.....     .+.+..+++++.++.+++.  +..++++++++++++.+.++. .+|+|++
T Consensus       311 ~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~kvvv~  374 (375)
T cd08282         311 LWAKGLSFGTGQAPV-----KKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL-ETKVVIK  374 (375)
T ss_pred             HHhcCcEEEEecCCc-----hhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC-ceEEEeC
Confidence            666777666544322     5668889999999999874  678899999999999999988 8899985

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.87  E-value=2.4e-20  Score=146.54  Aligned_cols=190  Identities=18%  Similarity=0.163  Sum_probs=155.3

Q ss_pred             cchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHH
Q 043295           21 TSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATL   96 (223)
Q Consensus        21 ~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i   96 (223)
                      .++.|+|+++.... +++++++|+  |++|.+++|+|+..|++ |+++++++++.+.++ ++|++.+++++.. ++.+.+
T Consensus       113 ~~~~~a~~~~~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~l  190 (312)
T cd08269         113 EPLGCALNVFRRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALAR-ELGATEVVTDDSE-AIVERV  190 (312)
T ss_pred             hhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCceEecCCCc-CHHHHH
Confidence            78889999987433 899999999  99999999999999998 999999988989888 8999888887665 788888


Q ss_pred             HHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccchHHHH
Q 043295           97 KRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDF  174 (223)
Q Consensus        97 ~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  174 (223)
                      .+.+++ ++|+++||+|+ ......+++++++|+++.+|....     ....+++.....++..+.++.... +....+.
T Consensus       191 ~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  264 (312)
T cd08269         191 RELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQD-----GPRPVPFQTWNWKGIDLINAVERD-PRIGLEG  264 (312)
T ss_pred             HHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCC-----CCcccCHHHHhhcCCEEEEecccC-ccchhhH
Confidence            888877 99999999985 578889999999999999986542     122334456667777777665433 2233578


Q ss_pred             HHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCC-cCcEEE
Q 043295          175 ISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDN-IGKKFV  218 (223)
Q Consensus       175 ~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~-~gk~v~  218 (223)
                      ++.+++++++|.+.+.  +..+++++++.++++.+.+++. .+|+++
T Consensus       265 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  311 (312)
T cd08269         265 MREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI  311 (312)
T ss_pred             HHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence            8899999999999873  5677899999999999999864 578886

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.87  E-value=3.6e-21  Score=132.29  Aligned_cols=127  Identities=26%  Similarity=0.445  Sum_probs=114.1

Q ss_pred             chHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCC-CccEEEcCCC-hHHHHHHHHh
Q 043295           45 AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPD-GIDVYFDNVG-GEMLEAAVAN  122 (223)
Q Consensus        45 ~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~-~~d~vid~~g-~~~~~~~~~~  122 (223)
                      ++|++++|+|+..|++|+++++++++++.++ ++|++.++++++. ++.+++++.+++ ++|+||||+| .+.++.++.+
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~-~~Ga~~~~~~~~~-~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~   78 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAK-ELGADHVIDYSDD-DFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKL   78 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHH-HTTESEEEETTTS-SHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHH-hhccccccccccc-ccccccccccccccceEEEEecCcHHHHHHHHHH
Confidence            5899999999999999999999999999999 9999999999987 899999999998 9999999999 6899999999


Q ss_pred             hccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccchHHHHHHHHHHHHH
Q 043295          123 MNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALR  183 (223)
Q Consensus       123 l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  183 (223)
                      ++++|+++.+|....     .....+...++.++.++.|+....     .+.++++++++.
T Consensus        79 l~~~G~~v~vg~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~~la  129 (130)
T PF00107_consen   79 LRPGGRIVVVGVYGG-----DPISFNLMNLMFKEITIRGSWGGS-----PEDFQEALQLLA  129 (130)
T ss_dssp             EEEEEEEEEESSTST-----SEEEEEHHHHHHTTEEEEEESSGG-----HHHHHHHHHHHH
T ss_pred             hccCCEEEEEEccCC-----CCCCCCHHHHHhCCcEEEEEccCC-----HHHHHHHHHHhc
Confidence            999999999998872     234667889999999999999887     566666666654

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.87  E-value=2.5e-20  Score=148.33  Aligned_cols=199  Identities=26%  Similarity=0.305  Sum_probs=157.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++++.+ .++.|||+++.... +++++|+|+  |.+|.+++|+|+..|++ |+++++++++.+.++ ++|++.++++++
T Consensus       136 ~~~aa~~-~~~~ta~~~l~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~-~~g~~~~~~~~~  213 (343)
T cd08236         136 YEEAAMI-EPAAVALHAVRLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR-ELGADDTINPKE  213 (343)
T ss_pred             HHHHHhc-chHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcCCCEEecCcc
Confidence            3456655 67899999997444 899999999  89999999999999997 999999999999998 899999998887


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      . . .+.+.+..++ ++|+++||+|+ ..+..++++++++|+++.+|.....   ..........++.++.++.++....
T Consensus       214 ~-~-~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  288 (343)
T cd08236         214 E-D-VEKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGD---VTLSEEAFEKILRKELTIQGSWNSY  288 (343)
T ss_pred             c-c-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCC---cccccCCHHHHHhcCcEEEEEeecc
Confidence            6 5 7777777776 89999999986 6788999999999999999865421   0111223445567788888877643


Q ss_pred             ccchHHHHHHHHHHHHHcCCCC--ccceeeeccCCHHHHHHHhHc-CCCcCcEEE
Q 043295          167 HFDLHQDFISMTCDALRAGKIQ--PLEDISNGVDSIPSAFTGFFR-GDNIGKKFV  218 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~--~~~~~~~~l~~~~~a~~~~~~-~~~~gk~v~  218 (223)
                      ......+.++++++++++|.+.  +.+..+++++++.++++.+.+ +...||+|+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~  343 (343)
T cd08236         289 SAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL  343 (343)
T ss_pred             ccccchhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence            3223356688899999999986  445677899999999999998 557788874

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.87  E-value=2.4e-20  Score=150.60  Aligned_cols=193  Identities=18%  Similarity=0.195  Sum_probs=154.5

Q ss_pred             hhhhccccchhhHHHHHHHH-h--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           14 VFANGAGTSGFTAYVGFYEI-S--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~-~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      .++|+++.++.|||+++... .  ++|++|+|+  |++|++++|+|+..|+ +|++++.++++.+.++ ++|++.++++.
T Consensus       178 ~~~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~-~~g~~~~v~~~  256 (384)
T cd08265         178 FEAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAK-EMGADYVFNPT  256 (384)
T ss_pred             HHHhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcCCCEEEccc
Confidence            35777888999999999665 3  899999999  9999999999999999 7999998888888888 89998888876


Q ss_pred             Cc--ccHHHHHHHhCCC-CccEEEcCCCh--HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEee
Q 043295           88 EE--TDLKATLKRYFPD-GIDVYFDNVGG--EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGF  162 (223)
Q Consensus        88 ~~--~~~~~~i~~~~~~-~~d~vid~~g~--~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  162 (223)
                      +.  .++.+.+++.+++ ++|+++||+|+  ..+..++++++++|+++.+|....      ...++...+..+..++.++
T Consensus       257 ~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~l~~~  330 (384)
T cd08265         257 KMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAAT------TVPLHLEVLQVRRAQIVGA  330 (384)
T ss_pred             ccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCC------CCcccHHHHhhCceEEEEe
Confidence            31  1577788888887 99999999996  367889999999999999986532      1123345555667777776


Q ss_pred             eccCccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          163 LSTDHFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                      .....    ...+.++++++++|.+++.  +..+++++++.+|++.+.++ ..||+|+
T Consensus       331 ~~~~~----~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~-~~~kvvv  383 (384)
T cd08265         331 QGHSG----HGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASER-TDGKITI  383 (384)
T ss_pred             eccCC----cchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcC-CCceEEe
Confidence            54321    3457889999999999864  56678999999999997554 5788886

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.87  E-value=5e-20  Score=145.08  Aligned_cols=200  Identities=23%  Similarity=0.351  Sum_probs=166.4

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      .++++.+++++.|||+++....  .++++++|+   |++|.+++++++..|++|+++++++++.+.++ ++|++.+++..
T Consensus       119 ~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~  197 (325)
T cd08253         119 FEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVR-QAGADAVFNYR  197 (325)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEeCC
Confidence            3478889999999999998755  889999999   89999999999999999999999999999998 89998888887


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      .. ++.+.+++.+++ ++|+++||+|+......+++++++|+++.+|....      ....+...++.++.++.+.....
T Consensus       198 ~~-~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  270 (325)
T cd08253         198 AE-DLADRILAATAGQGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSGGL------RGTIPINPLMAKEASIRGVLLYT  270 (325)
T ss_pred             Cc-CHHHHHHHHcCCCceEEEEECCchHHHHHHHHhhCCCCEEEEEeecCC------cCCCChhHHHhcCceEEeeehhh
Confidence            76 788888887766 89999999998888889999999999999987541      11233444566777777766443


Q ss_pred             c-cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          167 H-FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       167 ~-~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      . +....+.+..+.+++.++.+++.....++++++.++++.+.++...||+++++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  325 (325)
T cd08253         271 ATPEERAAAAEAIAAGLADGALRPVIAREYPLEEAAAAHEAVESGGAIGKVVLDP  325 (325)
T ss_pred             cCHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            2 34456678888889999999887778889999999999999988899999863

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08251 polyketide_synthase polyketide synthase

Probab=99.87  E-value=2.5e-20  Score=145.51  Aligned_cols=199  Identities=21%  Similarity=0.322  Sum_probs=159.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      .+++++++.++.|||+++.... +++++++|+   |++|.+++|+++..|++|+++++++++.+.++ ++|++.++++..
T Consensus        96 ~~~aa~~~~~~~ta~~~l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~  174 (303)
T cd08251          96 FEEACALPVVFLTVIDAFARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLK-QLGVPHVINYVE  174 (303)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HcCCCEEEeCCC
Confidence            4478889999999999996444 899999998   89999999999999999999999999999998 899999998877


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      . ++.+.+...+++ ++|+++|++++......+++++++|+++.+|..+...    ....... .+.++..+........
T Consensus       175 ~-~~~~~i~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~  248 (303)
T cd08251         175 E-DFEEEIMRLTGGRGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMTALKS----APSVDLS-VLSNNQSFHSVDLRKL  248 (303)
T ss_pred             c-cHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHhccCcEEEEEeccCCCc----cCccChh-HhhcCceEEEEehHHh
Confidence            6 788888888877 9999999999888889999999999999988654211    1122222 2334444444333221


Q ss_pred             ----cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          168 ----FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       168 ----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                          +....+.+.++.+++.+|.+++.....++++++.++++.+.+++..||+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  303 (303)
T cd08251         249 LLLDPEFIADYQAEMVSLVEEGELRPTVSRIFPFDDIGEAYRYLSDRENIGKVVV  303 (303)
T ss_pred             hhhCHHHHHHHHHHHHHHHHCCCccCCCceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence                233456778899999999998877788899999999999999888888874

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.87  E-value=3.3e-20  Score=147.76  Aligned_cols=188  Identities=21%  Similarity=0.274  Sum_probs=154.8

Q ss_pred             ccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecCCcccHH
Q 043295           18 GAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKEETDLK   93 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   93 (223)
                      ++...+.|||+++.... +++++|+|.  |++|++++|+|+..|++ ++++++++.+.+.++ ++|++.++++.+. .+.
T Consensus       149 ~l~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~-~~ga~~v~~~~~~-~~~  226 (345)
T cd08287         149 ALSDVMGTGHHAAVSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAR-EFGATDIVAERGE-EAV  226 (345)
T ss_pred             hhhcHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HcCCceEecCCcc-cHH
Confidence            34467899999986544 889999999  99999999999999995 888888888888888 8999999999876 788


Q ss_pred             HHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccchH
Q 043295           94 ATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLH  171 (223)
Q Consensus        94 ~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  171 (223)
                      +.+.+.+++ ++|+++||+|+ ..+..++++++++|+++.+|....      ...++....+.++.++.+.....     
T Consensus       227 ~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~-----  295 (345)
T cd08287         227 ARVRELTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHG------GVELDVRELFFRNVGLAGGPAPV-----  295 (345)
T ss_pred             HHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCC------CCccCHHHHHhcceEEEEecCCc-----
Confidence            888888877 99999999986 678999999999999999986542      12344446678888887744332     


Q ss_pred             HHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          172 QDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       172 ~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      .+.+.++++++.+|.+++.  +..+++++++.++++.+.++... |++++
T Consensus       296 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~-k~~~~  344 (345)
T cd08287         296 RRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAI-KVLLR  344 (345)
T ss_pred             HHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCce-EEEeC
Confidence            5678889999999999873  46778999999999998877655 99885

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.87  E-value=3.5e-20  Score=147.70  Aligned_cols=194  Identities=19%  Similarity=0.159  Sum_probs=158.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ..+++.++.++.|||+++....  +++++++|+  |++|.+++|+|+..| .+|++++.++.+.+.++ ++|++.++++.
T Consensus       141 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~  219 (345)
T cd08286         141 EEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAK-KLGATHTVNSA  219 (345)
T ss_pred             HHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCCceeccc
Confidence            4478888899999999765544  899999999  999999999999999 69999888888988888 89999999988


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeecc
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  165 (223)
                      +. ++...+...+++ ++|++|||+|+ +.+..+++.++++|+++.+|....      ...+++..++.+++++.+....
T Consensus       220 ~~-~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~  292 (345)
T cd08286         220 KG-DAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGK------PVDLHLEKLWIKNITITTGLVD  292 (345)
T ss_pred             cc-cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCC------CCCcCHHHHhhcCcEEEeecCc
Confidence            76 777888877776 89999999985 578888999999999999986432      1234566667788888764322


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCC--cCcEEEEe
Q 043295          166 DHFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDN--IGKKFVRI  220 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~--~gk~v~~~  220 (223)
                            .+.+..+.+++++|.+++.  +..+++++++.++++.+.+...  ..|+||++
T Consensus       293 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         293 ------TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             ------hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence                  2457788899999998764  5678899999999999987642  35998864

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.87  E-value=3.2e-20  Score=147.61  Aligned_cols=190  Identities=21%  Similarity=0.180  Sum_probs=147.0

Q ss_pred             hccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           17 NGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        17 a~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      ++++.+++|||+++.... +++++|+|+  |++|.+++|+|+..|++ +++++.++++.+.++ ++|++.++++++. +.
T Consensus       141 a~~~~~~~~a~~~~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~i~~~~~-~~  218 (341)
T cd08262         141 AALTEPLAVGLHAVRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALAL-AMGADIVVDPAAD-SP  218 (341)
T ss_pred             hhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HcCCcEEEcCCCc-CH
Confidence            347788899999864444 899999999  99999999999999996 677777888989888 8999888887654 32


Q ss_pred             HH---HHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           93 KA---TLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        93 ~~---~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      .+   .+....++ ++|+++|++|+ ..+..++.+++++|+++.+|.....      ..........++.++.++.... 
T Consensus       219 ~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~-  291 (341)
T cd08262         219 FAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMES------DNIEPALAIRKELTLQFSLGYT-  291 (341)
T ss_pred             HHHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCC------CccCHHHHhhcceEEEEEeccc-
Confidence            21   34444555 89999999997 4788899999999999999876321      1122222245666666544333 


Q ss_pred             cchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          168 FDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                          .+.+.++++++++|.+.+.  +..++++++++++++.+.+++..||+|++
T Consensus       292 ----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~  341 (341)
T cd08262         292 ----PEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD  341 (341)
T ss_pred             ----HHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence                4567889999999999864  46788999999999999999989999974

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.87  E-value=3.1e-20  Score=147.33  Aligned_cols=192  Identities=23%  Similarity=0.294  Sum_probs=156.4

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +.+++.+++++.|||+++.... +++++|+|+   |.+|++++|+|+..|++|+++++++++.+.++ ++ ++.+++++ 
T Consensus       138 ~~~~a~l~~~~~~a~~~~~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~-~~-~~~~~~~~-  214 (334)
T PRK13771        138 DEGAVIVPCVTGMVYRGLRRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVS-KY-ADYVIVGS-  214 (334)
T ss_pred             HHHhhcccchHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HH-HHHhcCch-
Confidence            3478889999999999997777 899999999   79999999999999999999999999999997 78 76776654 


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCcc
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  168 (223)
                        ++.+.++..  +++|+++||+|+.....++++++++|+++.+|.....    ..........+.+++++.+.....  
T Consensus       215 --~~~~~v~~~--~~~d~~ld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--  284 (334)
T PRK13771        215 --KFSEEVKKI--GGADIVIETVGTPTLEESLRSLNMGGKIIQIGNVDPS----PTYSLRLGYIILKDIEIIGHISAT--  284 (334)
T ss_pred             --hHHHHHHhc--CCCcEEEEcCChHHHHHHHHHHhcCCEEEEEeccCCC----CCcccCHHHHHhcccEEEEecCCC--
Confidence              355556554  3699999999998889999999999999999975431    111123344466788887764322  


Q ss_pred             chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          169 DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                         ++.++.+++++++|.+++.+..+++++++.+|++.+.++...||+|+..
T Consensus       285 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  333 (334)
T PRK13771        285 ---KRDVEEALKLVAEGKIKPVIGAEVSLSEIDKALEELKDKSRIGKILVKP  333 (334)
T ss_pred             ---HHHHHHHHHHHHcCCCcceEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence               5678889999999999887778889999999999999888889999865

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.87  E-value=2.9e-20  Score=148.46  Aligned_cols=191  Identities=18%  Similarity=0.181  Sum_probs=153.3

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++++.+ .++.|+|+++.... +++++|+|.  |++|.+++|+|+..|+ .++++++++++.+.+. ++|++.++++..
T Consensus       151 ~~~aa~~-~~~~ta~~a~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~  228 (350)
T cd08256         151 PEDAILI-EPLACALHAVDRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALAR-KFGADVVLNPPE  228 (350)
T ss_pred             HHHHhhh-hHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHH-HcCCcEEecCCC
Confidence            3466666 88999999984444 899999999  9999999999999998 4778888888888888 899998988876


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHH-HhhcceEEeeecc
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDI-VYKRIKIQGFLST  165 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~  165 (223)
                      . ++.+.+.+.+++ ++|+++|++|+ ..+..++++++++|+++.+|.....      ...+...+ ..+++++.++...
T Consensus       229 ~-~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~i~~~~~~  301 (350)
T cd08256         229 V-DVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDP------VTVDWSIIGDRKELDVLGSHLG  301 (350)
T ss_pred             c-CHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCC------CccChhHhhcccccEEEEeccC
Confidence            6 788888888877 89999999995 6788899999999999999864321      12223222 3456677766543


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          166 DHFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                      .      ..+.++++++++|.+++.  +..+++++++.+|++.+.+++..+|+|+
T Consensus       302 ~------~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~  350 (350)
T cd08256         302 P------YCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL  350 (350)
T ss_pred             c------hhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence            2      357788999999999874  5678899999999999999888889874

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.87  E-value=4.1e-20  Score=148.20  Aligned_cols=197  Identities=20%  Similarity=0.245  Sum_probs=159.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++++.+++++.|||+++....  .++++|+|+  |++|.+++|+|+..|++ |+++.+++++.+.++ ++|++.+++++
T Consensus       157 ~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~-~~g~~~vv~~~  235 (363)
T cd08279         157 LDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELAR-RFGATHTVNAS  235 (363)
T ss_pred             hHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH-HhCCeEEeCCC
Confidence            3478888999999999987766  899999999  89999999999999995 999999999999998 89999999888


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeecc
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  165 (223)
                      .. ++...+++.+++ ++|+++|++++ ......+++++++|+++.+|.....    ....++...+..++..+.++...
T Consensus       236 ~~-~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  310 (363)
T cd08279         236 ED-DAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPG----ETVSLPALELFLSEKRLQGSLYG  310 (363)
T ss_pred             Cc-cHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCC----cccccCHHHHhhcCcEEEEEEec
Confidence            76 788888888766 89999999994 6788999999999999999865421    12234555666667776665543


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEE
Q 043295          166 DHFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKF  217 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v  217 (223)
                      ..  ...+.++++++++++|.+++.  +..+++++++.+|++.+.+++..+.++
T Consensus       311 ~~--~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  362 (363)
T cd08279         311 SA--NPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI  362 (363)
T ss_pred             Cc--CcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence            21  225678889999999999863  567789999999999999887765554

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK10083 putative oxidoreductase; Provisional

Probab=99.87  E-value=5.1e-20  Score=146.37  Aligned_cols=190  Identities=19%  Similarity=0.119  Sum_probs=149.1

Q ss_pred             hccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHH-cCCe-EEEEecCHHHHHHHHHhhCCCeeeecCCccc
Q 043295           17 NGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKL-GGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKEETD   91 (223)
Q Consensus        17 a~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~-~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   91 (223)
                      +++..++.++|+++.... ++|++|+|+  |++|++++|+|+. +|++ ++++++++++.+.++ ++|++.++++.+. +
T Consensus       140 a~~~~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~-~~Ga~~~i~~~~~-~  217 (339)
T PRK10083        140 AVMVEPFTIAANVTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK-ESGADWVINNAQE-P  217 (339)
T ss_pred             HhhhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HhCCcEEecCccc-c
Confidence            346677888886554444 899999999  9999999999996 6995 777888889999998 8999999988765 6


Q ss_pred             HHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccc
Q 043295           92 LKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFD  169 (223)
Q Consensus        92 ~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  169 (223)
                      +.+.+..  .+ ++|++||++|+ ..+..++++++++|+++.+|....      ...++...+..+++++.+....    
T Consensus       218 ~~~~~~~--~g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~----  285 (339)
T PRK10083        218 LGEALEE--KGIKPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSE------PSEIVQQGITGKELSIFSSRLN----  285 (339)
T ss_pred             HHHHHhc--CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC------CceecHHHHhhcceEEEEEecC----
Confidence            6666643  23 57899999995 678999999999999999987542      1122344444566666665431    


Q ss_pred             hHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCC-CcCcEEEEecC
Q 043295          170 LHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGD-NIGKKFVRIAG  222 (223)
Q Consensus       170 ~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~-~~gk~v~~~~~  222 (223)
                        .+.++++++++++|.+++.  +..+++++++.+|++.+.++. ..+|+|+.+.+
T Consensus       286 --~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~  339 (339)
T PRK10083        286 --ANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE  339 (339)
T ss_pred             --hhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence              4568889999999999874  678899999999999998654 56899999864

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.87  E-value=1.3e-19  Score=143.80  Aligned_cols=196  Identities=23%  Similarity=0.350  Sum_probs=163.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++++.++.++.|||+++.+..  .++++++|+   +++|.+++++++..|++|+.+++++++.+.++ .++.+.+++..
T Consensus       141 ~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~  219 (342)
T cd08266         141 FEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAK-ELGADYVIDYR  219 (342)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCeEEecC
Confidence            3478888889999999987665  889999999   58999999999999999999999999989888 78887788776


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      +. ++.+.+...+.+ ++|+++|++|+..+...+++++++|+++.+|.....     ....+....+.++.++.++....
T Consensus       220 ~~-~~~~~~~~~~~~~~~d~~i~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  293 (342)
T cd08266         220 KE-DFVREVRELTGKRGVDVVVEHVGAATWEKSLKSLARGGRLVTCGATTGY-----EAPIDLRHVFWRQLSILGSTMGT  293 (342)
T ss_pred             Ch-HHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHhhcCCEEEEEecCCCC-----CCCcCHHHHhhcceEEEEEecCC
Confidence            65 677777777766 899999999998889999999999999999866532     12344445677888888877654


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                           ...+..++++++++.+++.+...++++++.++++.+.++...+|+|++.
T Consensus       294 -----~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  342 (342)
T cd08266         294 -----KAELDEALRLVFRGKLKPVIDSVFPLEEAAEAHRRLESREQFGKIVLTP  342 (342)
T ss_pred             -----HHHHHHHHHHHHcCCcccceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence                 4578889999999999888778899999999999999888889999863

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.87  E-value=6e-20  Score=146.23  Aligned_cols=189  Identities=20%  Similarity=0.240  Sum_probs=151.0

Q ss_pred             hhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           15 FANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      +++.+ .++.|||+++.... +++++|+|+  |++|.+++|+|+..|++ |+++++++++.+.++ ++|++.++++++. 
T Consensus       141 ~aa~~-~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~-~~g~~~vi~~~~~-  217 (343)
T cd05285         141 EGALV-EPLSVGVHACRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAK-ELGATHTVNVRTE-  217 (343)
T ss_pred             Hhhhh-hHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HcCCcEEeccccc-
Confidence            55544 57889999974444 899999999  89999999999999997 999998999999998 8999999988765 


Q ss_pred             cH---HHHHHHhCCC-CccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeecc
Q 043295           91 DL---KATLKRYFPD-GIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        91 ~~---~~~i~~~~~~-~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  165 (223)
                      ++   .+.+.+.+++ ++|+++||+|+. .+...+++++++|+++.+|.....      ...+......+++.+.++...
T Consensus       218 ~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~  291 (343)
T cd05285         218 DTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPE------VTLPLSAASLREIDIRGVFRY  291 (343)
T ss_pred             cchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCC------CccCHHHHhhCCcEEEEeccC
Confidence            53   7778877777 899999999975 788999999999999999864321      123344555667776665432


Q ss_pred             CccchHHHHHHHHHHHHHcCCCC--ccceeeeccCCHHHHHHHhHcCC-CcCcEEE
Q 043295          166 DHFDLHQDFISMTCDALRAGKIQ--PLEDISNGVDSIPSAFTGFFRGD-NIGKKFV  218 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~i~--~~~~~~~~l~~~~~a~~~~~~~~-~~gk~v~  218 (223)
                            .+.+.+++++++++.+.  +.+..+++++++.+|++.+.+++ ..+|+++
T Consensus       292 ------~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~  341 (343)
T cd05285         292 ------ANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI  341 (343)
T ss_pred             ------hHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence                  25678889999999875  34566789999999999999885 4489987

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.86  E-value=6.2e-20  Score=147.25  Aligned_cols=197  Identities=18%  Similarity=0.183  Sum_probs=156.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++++.+++++.|||+++....  +++++|+|+  |++|++++|+|+..|++ |+++++++++.+.++ ++|++.+++++
T Consensus       158 ~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~  236 (365)
T cd05279         158 LEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAK-QLGATECINPR  236 (365)
T ss_pred             HHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HhCCCeecccc
Confidence            4578888889999999987766  889999999  99999999999999995 778888999999998 89999888876


Q ss_pred             Ccc-cHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhc-cCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           88 EET-DLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMN-LFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        88 ~~~-~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~-~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      +.+ ++.+.+++.+++++|+++|++|. ..+..++++++ ++|+++.+|.....    ....++...+ .++.++.|+..
T Consensus       237 ~~~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~----~~~~~~~~~~-~~~~~l~g~~~  311 (365)
T cd05279         237 DQDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSG----TEATLDPNDL-LTGRTIKGTVF  311 (365)
T ss_pred             cccchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCC----CceeeCHHHH-hcCCeEEEEec
Confidence            531 46667777775699999999985 78889999999 99999999864311    1224455555 66777777755


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                      ..+.  ..+.+..+++++++|.+++.  +..+++++++.+||+.+.+++.. |+++
T Consensus       312 ~~~~--~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~-~~~~  364 (365)
T cd05279         312 GGWK--SKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESI-RTIL  364 (365)
T ss_pred             cCCc--hHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCce-eeee
Confidence            4321  24667889999999998864  66778999999999999877654 6655

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.86  E-value=1.7e-19  Score=142.10  Aligned_cols=200  Identities=27%  Similarity=0.380  Sum_probs=165.5

Q ss_pred             hhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           14 VFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ..+++++.++.|+|+++....  +++++++|+   |++|.+++++++..|++|+++++++++.+.++ ++|++.+++...
T Consensus       115 ~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~  193 (325)
T TIGR02824       115 VEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACE-ALGADIAINYRE  193 (325)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEecCc
Confidence            477889999999999987666  889999999   89999999999999999999999999888887 899888887776


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      . ++.+.++...++ ++|+++||+|+.....++++++++|+++.+|......    . ..++..++.+++++.++.....
T Consensus       194 ~-~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~  267 (325)
T TIGR02824       194 E-DFVEVVKAETGGKGVDVILDIVGGSYLNRNIKALALDGRIVQIGFQGGRK----A-ELDLGPLLAKRLTITGSTLRAR  267 (325)
T ss_pred             h-hHHHHHHHHcCCCCeEEEEECCchHHHHHHHHhhccCcEEEEEecCCCCc----C-CCChHHHHhcCCEEEEEehhhc
Confidence            5 677888887776 8999999999888889999999999999998754321    1 3445555688999998875442


Q ss_pred             -----cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          168 -----FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       168 -----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                           +....+.+.+++++++++.+.+.....++++++.++++.+.++...||+++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  325 (325)
T TIGR02824       268 PVAEKAAIAAELREHVWPLLASGRVRPVIDKVFPLEDAAQAHALMESGDHIGKIVLTV  325 (325)
T ss_pred             chhhhHHHHHHHHHHHHHHHHCCcccCccccEEeHHHHHHHHHHHHhCCCcceEEEeC
Confidence                 22234566778899999999877777889999999999999888889999864

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.86  E-value=6.9e-20  Score=145.75  Aligned_cols=190  Identities=21%  Similarity=0.284  Sum_probs=150.9

Q ss_pred             cccchhhHHHHHHHHhhCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHH
Q 043295           19 AGTSGFTAYVGFYEISQKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKAT   95 (223)
Q Consensus        19 l~~~~~ta~~~l~~~~~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   95 (223)
                      ...++.++++++.....+|++|+|+  |++|.+++|+|+..|+ +|+++..++++.+.++ ++|++.++++++. ++.+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~lg~~~~~~~~~~-~~~~~  223 (341)
T PRK05396        146 IFDPFGNAVHTALSFDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELAR-KMGATRAVNVAKE-DLRDV  223 (341)
T ss_pred             hhhHHHHHHHHHHcCCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HhCCcEEecCccc-cHHHH
Confidence            4456677766654322789999999  9999999999999999 6888888888989888 8999999988876 78888


Q ss_pred             HHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccchHHH
Q 043295           96 LKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQD  173 (223)
Q Consensus        96 i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  173 (223)
                      +++.+++ ++|++|||.|+ ..+..++++++++|+++.+|.....      ...+...+..++.++.++.....    .+
T Consensus       224 ~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~l~~~~~~~~----~~  293 (341)
T PRK05396        224 MAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGD------MAIDWNKVIFKGLTIKGIYGREM----FE  293 (341)
T ss_pred             HHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCC------CcccHHHHhhcceEEEEEEccCc----cc
Confidence            8888876 99999999986 5788999999999999999875421      12234666777888877653321    23


Q ss_pred             HHHHHHHHHHcC-CCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          174 FISMTCDALRAG-KIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       174 ~~~~~~~~~~~g-~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      .+..+++++.++ .+.+.+..+++++++.+|++.+.++. .||+|++|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~-~gk~vv~~~  341 (341)
T PRK05396        294 TWYKMSALLQSGLDLSPIITHRFPIDDFQKGFEAMRSGQ-SGKVILDWD  341 (341)
T ss_pred             hHHHHHHHHHcCCChhHheEEEEeHHHHHHHHHHHhcCC-CceEEEecC
Confidence            455678888888 45555677889999999999998876 799999874

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.86  E-value=4.3e-20  Score=146.83  Aligned_cols=193  Identities=19%  Similarity=0.258  Sum_probs=153.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh------------hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS------------QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK   77 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~------------~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~   77 (223)
                      ++.++.+++++.|||+++....            .++++++|+   |++|++++|+|+..|++|++++ ++++.+.++ +
T Consensus       119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~-~  196 (339)
T cd08249         119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLVK-S  196 (339)
T ss_pred             HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHHH-h
Confidence            4478888999999999987653            478999999   7899999999999999999988 568889997 8


Q ss_pred             hCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhcc--CcEEEEEcccccccccccCCCCchHHHHh
Q 043295           78 LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNL--FGRVAACGVISECADASKRAVPNMIDIVY  154 (223)
Q Consensus        78 ~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~--~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  154 (223)
                      +|++.++++.+. ++.+.++..+++++|+++|++|+ ..+..+++++++  +|+++.+|......            .+.
T Consensus       197 ~g~~~v~~~~~~-~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~~~~------------~~~  263 (339)
T cd08249         197 LGADAVFDYHDP-DVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEET------------EPR  263 (339)
T ss_pred             cCCCEEEECCCc-hHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEecCCCccc------------cCC
Confidence            999999998876 78888888776789999999998 889999999999  99999998654321            011


Q ss_pred             hcceEEee---ecc----CccchHHHHHHHHHHHHHcCCCCccceeeec--cCCHHHHHHHhHcCC-CcCcEEEEe
Q 043295          155 KRIKIQGF---LST----DHFDLHQDFISMTCDALRAGKIQPLEDISNG--VDSIPSAFTGFFRGD-NIGKKFVRI  220 (223)
Q Consensus       155 ~~~~~~g~---~~~----~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~--l~~~~~a~~~~~~~~-~~gk~v~~~  220 (223)
                      .+......   ...    ..+......++.+.++++++.+.+....+++  ++++.+|++.+.+++ ..+|+|+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~  339 (339)
T cd08249         264 KGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL  339 (339)
T ss_pred             CCceEEEEEeeeecccccccccchHHHHHHHHHHHHcCCccCCCceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence            12222221   111    1123334678889999999999987666777  999999999999998 889999874

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.86  E-value=2.2e-19  Score=141.26  Aligned_cols=199  Identities=26%  Similarity=0.399  Sum_probs=164.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +.++++++.++.|+|+++....  .++++++|+   |++|++++++++..|++|+.+++++++.+.++ ++|++.+++..
T Consensus       114 ~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~  192 (323)
T cd05276         114 LVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACR-ALGADVAINYR  192 (323)
T ss_pred             HHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HcCCCEEEeCC
Confidence            3478889999999999988766  889999999   78999999999999999999999989989887 89988888877


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      .. ++.+.+.+.+.+ ++|+++|++|+......+++++++|+++.+|..+...     ...+...++.++.++.++....
T Consensus       193 ~~-~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~~~~g~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  266 (323)
T cd05276         193 TE-DFAEEVKEATGGRGVDVILDMVGGDYLARNLRALAPDGRLVLIGLLGGAK-----AELDLAPLLRKRLTLTGSTLRS  266 (323)
T ss_pred             ch-hHHHHHHHHhCCCCeEEEEECCchHHHHHHHHhhccCCEEEEEecCCCCC-----CCCchHHHHHhCCeEEEeeccc
Confidence            66 777888877766 8999999999988888999999999999998654321     1334455567888888877543


Q ss_pred             c-----cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          167 H-----FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       167 ~-----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                      .     +......+.++.+++.++.+++.....++++++.++++.+.++...||+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  323 (323)
T cd05276         267 RSLEEKAALAAAFREHVWPLFASGRIRPVIDKVFPLEEAAEAHRRMESNEHIGKIVL  323 (323)
T ss_pred             hhhhccHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            2     222345677788899999998877788999999999999998888888874

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.86  E-value=1.5e-19  Score=140.17  Aligned_cols=199  Identities=25%  Similarity=0.360  Sum_probs=160.3

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhC--CCeeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG--FDDAFN   85 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g--~~~~~~   85 (223)
                      +.+++.+++++.|+|+++....  ++|++++|+   |++|++++|+++..|++|+++++++++.+.++ ++|  ++.+++
T Consensus        83 ~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~  161 (293)
T cd05195          83 FEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLR-ELGGPVDHIFS  161 (293)
T ss_pred             HHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HhCCCcceEee
Confidence            3477888899999999997766  899999999   89999999999999999999999989999998 777  678888


Q ss_pred             cCCcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           86 YKEETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        86 ~~~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      +... ++.+.+++.+++ ++|+++||+|+..+...+.+++++|+++.+|......    ...... ..+.++..+.+...
T Consensus       162 ~~~~-~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~----~~~~~~-~~~~~~~~~~~~~~  235 (293)
T cd05195         162 SRDL-SFADGILRATGGRGVDVVLNSLSGELLRASWRCLAPFGRFVEIGKRDILS----NSKLGM-RPFLRNVSFSSVDL  235 (293)
T ss_pred             cCch-hHHHHHHHHhCCCCceEEEeCCCchHHHHHHHhcccCceEEEeecccccc----CCccch-hhhccCCeEEEEeH
Confidence            7766 788888888876 8999999999988999999999999999998654321    111122 23445666665554


Q ss_pred             cCc----cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          165 TDH----FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       165 ~~~----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                      ...    +....+.+..+.+++.++.+++..+..++++++.++++.+.++...||+|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ivv  293 (293)
T cd05195         236 DQLARERPELLRELLREVLELLEAGVLKPLPPTVVPSASEIDAFRLMQSGKHIGKVVL  293 (293)
T ss_pred             HHHhhhChHHHHHHHHHHHHHHHCCCcccCCCeeechhhHHHHHHHHhcCCCCceecC
Confidence            332    223355788899999999999887888899999999999998888888874

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.85  E-value=2.1e-19  Score=141.93  Aligned_cols=198  Identities=21%  Similarity=0.275  Sum_probs=156.6

Q ss_pred             hhhhhccccchhhHHHHHH---HHh-h-CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee
Q 043295           13 YVFANGAGTSGFTAYVGFY---EIS-Q-KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF   84 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~---~~~-~-~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~   84 (223)
                      +++++.++.+++||+.++.   ... . ++++|+|+   |++|.+++|+|+..|++|++++.++++.+.++ ++|++.++
T Consensus       118 ~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~  196 (324)
T cd08288         118 ARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPEEADYLR-SLGASEII  196 (324)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-hcCCCEEE
Confidence            4578888999999987765   333 4 67899999   89999999999999999999999999999998 89999999


Q ss_pred             ecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           85 NYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        85 ~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      ++++.   ...++..+++++|.++|++++..+...+..++.+|+++.+|.....     ....++..++.++.++.++..
T Consensus       197 ~~~~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~  268 (324)
T cd08288         197 DRAEL---SEPGRPLQKERWAGAVDTVGGHTLANVLAQTRYGGAVAACGLAGGA-----DLPTTVMPFILRGVTLLGIDS  268 (324)
T ss_pred             Ecchh---hHhhhhhccCcccEEEECCcHHHHHHHHHHhcCCCEEEEEEecCCC-----CCCcchhhhhccccEEEEEEe
Confidence            87653   2355555555789999999987777888899999999999875321     112344455578899888764


Q ss_pred             cCc-cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          165 TDH-FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       165 ~~~-~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ... .....+.+..+.+++.++.+++ +...++++++.++++.+.+++..||+|+++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~a~~~~~~~~~~~~vvv~~  324 (324)
T cd08288         269 VMAPIERRRAAWARLARDLDPALLEA-LTREIPLADVPDAAEAILAGQVRGRVVVDV  324 (324)
T ss_pred             ecccchhhHHHHHHHHHHHhcCCccc-cceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence            332 2234567788888999998876 467889999999999999999999999864

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.85  E-value=1.8e-19  Score=143.38  Aligned_cols=193  Identities=20%  Similarity=0.281  Sum_probs=152.7

Q ss_pred             hhhccccchhhHHHHHHHHhhCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecCCccc
Q 043295           15 FANGAGTSGFTAYVGFYEISQKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKEETD   91 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   91 (223)
                      ..++++.++.+|++++....+++++++|.  |++|.+++|+|+..|++ |+++..++++.+.++ ++|++.++++... +
T Consensus       140 ~~a~~~~~~~~a~~~~~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~v~~~~~-~  217 (340)
T TIGR00692       140 EYATIQEPLGNAVHTVLAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAK-KMGATYVVNPFKE-D  217 (340)
T ss_pred             HhhhhcchHHHHHHHHHccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCcEEEccccc-C
Confidence            45567888899998872211789999999  99999999999999996 888888888888888 8999888888776 7


Q ss_pred             HHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchH-HHHhhcceEEeeeccCcc
Q 043295           92 LKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMI-DIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        92 ~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~  168 (223)
                      +.+.+.+.+++ ++|+++||+|+ ..+...+++++++|+++.+|.....      ...+.. .++.++.++.++....  
T Consensus       218 ~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--  289 (340)
T TIGR00692       218 VVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGK------VTIDFTNKVIFKGLTIYGITGRH--  289 (340)
T ss_pred             HHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEccCCCC------cccchhhhhhhcceEEEEEecCC--
Confidence            88888888776 99999999885 6788899999999999999875321      111222 4555677776654222  


Q ss_pred             chHHHHHHHHHHHHHcCCCC--ccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          169 DLHQDFISMTCDALRAGKIQ--PLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~--~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                        ..+.+.++++++.+|.++  +.+...++++++.++++.+.++.. ||+|+++
T Consensus       290 --~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-gkvvv~~  340 (340)
T TIGR00692       290 --MFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQT-GKVILSL  340 (340)
T ss_pred             --chhhHHHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCC-ceEEEeC
Confidence              234577899999999997  445678899999999999987764 9999875

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>smart00829 PKS_ER Enoylreductase

Probab=99.85  E-value=1.9e-19  Score=139.43  Aligned_cols=199  Identities=22%  Similarity=0.336  Sum_probs=158.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC--Ceeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF--DDAFN   85 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~--~~~~~   85 (223)
                      +.+++.+++++.|+|+++....  .++++|+|+   |++|.+++|+++..|++|+++++++++.+.++ ++|+  +.+++
T Consensus        79 ~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~  157 (288)
T smart00829       79 FEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLR-ELGIPDDHIFS  157 (288)
T ss_pred             HHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCChhheee
Confidence            3478888899999999986655  889999999   89999999999999999999999999999998 8998  78888


Q ss_pred             cCCcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           86 YKEETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        86 ~~~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      +.+. ++.+.+...+++ ++|+++|++|+......+++++++|+++.+|......    ....+... +.++.++.+...
T Consensus       158 ~~~~-~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~----~~~~~~~~-~~~~~~~~~~~~  231 (288)
T smart00829      158 SRDL-SFADEILRATGGRGVDVVLNSLAGEFLDASLRCLAPGGRFVEIGKRDIRD----NSQLGMAP-FRRNVSYHAVDL  231 (288)
T ss_pred             CCCc-cHHHHHHHHhCCCCcEEEEeCCCHHHHHHHHHhccCCcEEEEEcCcCCcc----ccccchhh-hcCCceEEEEEH
Confidence            8776 788888887776 8999999999888888999999999999998654211    11222222 456666666554


Q ss_pred             cCc---cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          165 TDH---FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       165 ~~~---~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                      ...   +....+.+..+.+++.++.+.+.....++++++.++++.+..+...||+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv  288 (288)
T smart00829      232 DALEEGPDRIRELLAEVLELFAEGVLRPLPVTVFPISDVEDAFRYMQQGKHIGKVVL  288 (288)
T ss_pred             HHhhcChHHHHHHHHHHHHHHHCCCccCcCceEEcHHHHHHHHHHHhcCCCcceEeC
Confidence            321   122345677888999999988766677899999999999998887788774

Enoylreductase in Polyketide synthases.

>cd05281 TDH Threonine dehydrogenase

Probab=99.85  E-value=2e-19  Score=143.17  Aligned_cols=191  Identities=20%  Similarity=0.258  Sum_probs=152.1

Q ss_pred             hhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           15 FANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      ++++++.++.++++++. .. .++++|+|+  |++|.+++|+|+..|+ +|++++.++++.+.++ ++|++.+++++.. 
T Consensus       142 ~~a~~~~~~~~a~~~~~-~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-  218 (341)
T cd05281         142 EIASIQEPLGNAVHTVL-AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAK-KMGADVVINPREE-  218 (341)
T ss_pred             HHhhhhhHHHHHHHHHH-hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCcceeeCcccc-
Confidence            45577788889998875 33 889999999  9999999999999999 7999988888888888 8999888888765 


Q ss_pred             cHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCc-hHHHHhhcceEEeeeccCc
Q 043295           91 DLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPN-MIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        91 ~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~  167 (223)
                      ++. .+++.+++ ++|++|||+|+ .....++++++++|+++.+|.....      ...+ ....+.++..+.++.....
T Consensus       219 ~~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  291 (341)
T cd05281         219 DVV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGP------VDIDLNNLVIFKGLTVQGITGRKM  291 (341)
T ss_pred             cHH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCC------cccccchhhhccceEEEEEecCCc
Confidence            677 78887776 99999999986 5788899999999999999865431      1112 1235667777776653321


Q ss_pred             cchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          168 FDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                          .+.+..+.+++.+|.+.+  .+..+++++++.++|+.+.++. .||+|++.
T Consensus       292 ----~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~gk~vv~~  341 (341)
T cd05281         292 ----FETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGK-CGKVVLYP  341 (341)
T ss_pred             ----chhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCC-CceEEecC
Confidence                345677889999999863  3556789999999999999988 89999863

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.85  E-value=2.8e-19  Score=141.91  Aligned_cols=196  Identities=18%  Similarity=0.205  Sum_probs=156.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hC-----CCEEEEE---CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QK-----GEKVFVS---GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGFD   81 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~-----g~~vlI~---g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~~   81 (223)
                      +++++.++..+.|||+++....  .+     +++|+|+   |++|++++|+|+..| ++|+++++++++.+.++ ++|++
T Consensus       119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~  197 (336)
T cd08252         119 FAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVK-ELGAD  197 (336)
T ss_pred             HHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHH-hcCCc
Confidence            4478888999999999987665  56     9999999   899999999999999 89999999999999998 89999


Q ss_pred             eeeecCCcccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEE
Q 043295           82 DAFNYKEETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQ  160 (223)
Q Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (223)
                      .++++.+  ++.+.++...++++|+++||+|+ ..+..++++++++|+++.+|...        ...+...++.++.++.
T Consensus       198 ~~~~~~~--~~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~--------~~~~~~~~~~~~~~~~  267 (336)
T cd08252         198 HVINHHQ--DLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQ--------EPLDLGPLKSKSASFH  267 (336)
T ss_pred             EEEeCCc--cHHHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecCCC--------CcccchhhhcccceEE
Confidence            8988764  56667765443489999999995 68899999999999999998542        1233444456778877


Q ss_pred             eeeccCc-----c--chHHHHHHHHHHHHHcCCCCcccee---eeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          161 GFLSTDH-----F--DLHQDFISMTCDALRAGKIQPLEDI---SNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       161 g~~~~~~-----~--~~~~~~~~~~~~~~~~g~i~~~~~~---~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      +......     +  ......+..+++++.+|.+++....   .++++++.++++.+.++...||++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  336 (336)
T cd08252         268 WEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIVLE  336 (336)
T ss_pred             EEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence            7554321     1  1234678889999999999876433   35899999999999999989999874

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.85  E-value=5.4e-19  Score=139.46  Aligned_cols=201  Identities=26%  Similarity=0.332  Sum_probs=165.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +..++.++.++.|+|+++....  .++++++|+   |++|++++++++..|++++.++.++.+.+.++ ++|.+.++++.
T Consensus       119 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~  197 (328)
T cd08268         119 FVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALL-ALGAAHVIVTD  197 (328)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HcCCCEEEecC
Confidence            3477889999999999987766  789999999   89999999999999999999999999999997 88988888887


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      .. .+...+...+.+ ++|+++++.|+......+++++++|+++.+|.....     ....+....+.++.++.++....
T Consensus       198 ~~-~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  271 (328)
T cd08268         198 EE-DLVAEVLRITGGKGVDVVFDPVGGPQFAKLADALAPGGTLVVYGALSGE-----PTPFPLKAALKKSLTFRGYSLDE  271 (328)
T ss_pred             Cc-cHHHHHHHHhCCCCceEEEECCchHhHHHHHHhhccCCEEEEEEeCCCC-----CCCCchHHHhhcCCEEEEEeccc
Confidence            76 777778777776 899999999998888999999999999999865431     11233444578888888876543


Q ss_pred             c---cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          167 H---FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       167 ~---~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      .   +......+..+.+++.++.+.+.....++++++.++++.+.++...||+|+++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  328 (328)
T cd08268         272 ITLDPEARRRAIAFILDGLASGALKPVVDRVFPFDDIVEAHRYLESGQQIGKIVVTP  328 (328)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCCcCCcccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            2   33445667777888889999887777889999999999999888889999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.85  E-value=5.4e-19  Score=139.10  Aligned_cols=198  Identities=27%  Similarity=0.349  Sum_probs=163.4

Q ss_pred             hhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           15 FANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++++++.++.+||+++....  .++++|+|+   |++|.+++++++..|++|+.++.++++.+.++ ++|++.+++....
T Consensus       116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~  194 (323)
T cd08241         116 EAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALAR-ALGADHVIDYRDP  194 (323)
T ss_pred             HHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH-HcCCceeeecCCc
Confidence            56778899999999987665  889999999   78999999999999999999999999999998 8998888887776


Q ss_pred             ccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc-
Q 043295           90 TDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH-  167 (223)
Q Consensus        90 ~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-  167 (223)
                       ++.+.++..+++ ++|.++||+|+.....++++++++|+++.+|.....     .........+.++.++.++....+ 
T Consensus       195 -~~~~~i~~~~~~~~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  268 (323)
T cd08241         195 -DLRERVKALTGGRGVDVVYDPVGGDVFEASLRSLAWGGRLLVIGFASGE-----IPQIPANLLLLKNISVVGVYWGAYA  268 (323)
T ss_pred             -cHHHHHHHHcCCCCcEEEEECccHHHHHHHHHhhccCCEEEEEccCCCC-----cCcCCHHHHhhcCcEEEEEeccccc
Confidence             788888888877 899999999998888899999999999999864321     111233345668888888775543 


Q ss_pred             ---cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          168 ---FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       168 ---~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                         +....+.+.++++++.++.+.+.....++++++.++++.+.++...+|++++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~  323 (323)
T cd08241         269 RREPELLRANLAELFDLLAEGKIRPHVSAVFPLEQAAEALRALADRKATGKVVLT  323 (323)
T ss_pred             chhHHHHHHHHHHHHHHHHCCCcccccceEEcHHHHHHHHHHHHhCCCCCcEEeC
Confidence               2223467788999999999987777788999999999999988888898863

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.85  E-value=4e-19  Score=140.69  Aligned_cols=191  Identities=26%  Similarity=0.316  Sum_probs=153.8

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++++.+++++.|||+++.... +++++++|+   |++|.+++++++..|++|+++++++++.+.++ ++|.+.+++.. 
T Consensus       138 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~-  215 (332)
T cd08259         138 DESAALAACVVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILK-ELGADYVIDGS-  215 (332)
T ss_pred             HHHHhhhccHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-HcCCcEEEecH-
Confidence            4578889999999999998844 889999999   89999999999999999999999988888887 88887777543 


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCcc
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  168 (223)
                        ++.+.+.+..  ++|++++++|+......+++++++|+++.+|......     ...+......++..+.++....  
T Consensus       216 --~~~~~~~~~~--~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--  284 (332)
T cd08259         216 --KFSEDVKKLG--GADVVIELVGSPTIEESLRSLNKGGRLVLIGNVTPDP-----APLRPGLLILKEIRIIGSISAT--  284 (332)
T ss_pred             --HHHHHHHhcc--CCCEEEECCChHHHHHHHHHhhcCCEEEEEcCCCCCC-----cCCCHHHHHhCCcEEEEecCCC--
Confidence              2445555443  6999999999988889999999999999998654321     1123333345667666654222  


Q ss_pred             chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          169 DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                         .+.++++++++++|.+++.+..+++++++.+|++.+.++...||+|++
T Consensus       285 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  332 (332)
T cd08259         285 ---KADVEEALKLVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVLK  332 (332)
T ss_pred             ---HHHHHHHHHHHHcCCCccceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence               567888999999999998888889999999999999998888999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.84  E-value=5.6e-19  Score=140.42  Aligned_cols=187  Identities=20%  Similarity=0.252  Sum_probs=148.5

Q ss_pred             hhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           15 FANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      +++ ++.++.|||+++.... .++++|||.  |++|.+++|+|+..|+ +|++++.++++.+.++ ++|++.++++++. 
T Consensus       144 ~aa-~~~~~~~a~~~l~~~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~-~~g~~~vi~~~~~-  220 (339)
T cd08232         144 RAA-LAEPLAVALHAVNRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR-AMGADETVNLARD-  220 (339)
T ss_pred             Hhh-hcchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HcCCCEEEcCCch-
Confidence            444 4678899999997776 789999999  9999999999999999 8999998888888888 8999999988764 


Q ss_pred             cHHHHHHHhC-CC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           91 DLKATLKRYF-PD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        91 ~~~~~i~~~~-~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      ++    .+.. .. ++|+++||+|+ ..+...+++|+++|+++.+|....      ....+...++.+++++.++...  
T Consensus       221 ~~----~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~--  288 (339)
T cd08232         221 PL----AAYAADKGDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLGG------PVPLPLNALVAKELDLRGSFRF--  288 (339)
T ss_pred             hh----hhhhccCCCccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCC------CccCcHHHHhhcceEEEEEecC--
Confidence            32    2222 22 69999999995 678899999999999999985431      1123344456677777766522  


Q ss_pred             cchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          168 FDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                          .+.++.+++++++|.+++.  +..+++++++.++++.+.++...||+|+++
T Consensus       289 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  339 (339)
T cd08232         289 ----DDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF  339 (339)
T ss_pred             ----HHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence                3567888999999998643  567889999999999999888899999874

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.84  E-value=7.8e-19  Score=141.21  Aligned_cols=199  Identities=18%  Similarity=0.205  Sum_probs=151.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++++.+++++.|||+++....  +++++|+|+  |++|++++|+|+..|+ +|+++++++++++.++ ++|+++++++.
T Consensus       165 ~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~-~lGa~~~i~~~  243 (373)
T cd08299         165 LEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAK-ELGATECINPQ  243 (373)
T ss_pred             hHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcCCceEeccc
Confidence            4588888999999999976655  889999999  9999999999999999 8999999999999998 89999999876


Q ss_pred             Cc-ccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhh-ccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           88 EE-TDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANM-NLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        88 ~~-~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      +. +++.+.+.+.+++++|+++||+|+ ..+..++..+ .++|+++.+|.....    ....++.. .+.++.++.++..
T Consensus       244 ~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~----~~~~~~~~-~~~~~~~i~~~~~  318 (373)
T cd08299         244 DYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSS----QNLSINPM-LLLTGRTWKGAVF  318 (373)
T ss_pred             ccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCC----ceeecCHH-HHhcCCeEEEEEe
Confidence            53 136677777766689999999996 5677766655 579999999975431    11123332 2346778888776


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCC--ccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQ--PLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~--~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ..+.  ....+.++++.+.++.++  +.+..+++++++.+|++.+.+++. .|+++.+
T Consensus       319 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~-~k~~~~~  373 (373)
T cd08299         319 GGWK--SKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKS-IRTVLTF  373 (373)
T ss_pred             cCCc--cHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCc-ceEEEeC
Confidence            5431  124455666777777554  346778899999999999887664 4887753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.83  E-value=1.2e-18  Score=137.95  Aligned_cols=189  Identities=24%  Similarity=0.302  Sum_probs=152.8

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      +.+++.++..+.|||+++.... .++++|+|+  |++|++++++|+..|++|+++++++++.+.++ ++|++.++++.+.
T Consensus       138 ~~~~~~l~~~~~ta~~~l~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~  216 (330)
T cd08245         138 LAQAAPLLCAGITVYSALRDAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELAR-KLGADEVVDSGAE  216 (330)
T ss_pred             HHHhhhhhhhHHHHHHHHHhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HhCCcEEeccCCc
Confidence            4577889999999999997755 899999999  78999999999999999999999999999997 8999888876654


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCcc
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  168 (223)
                       .....    ..+++|+++||+++ .....++++++++|+++.++.....     ....+...++.++.++.++....  
T Consensus       217 -~~~~~----~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--  284 (330)
T cd08245         217 -LDEQA----AAGGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPESP-----PFSPDIFPLIMKRQSIAGSTHGG--  284 (330)
T ss_pred             -chHHh----ccCCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCCC-----ccccchHHHHhCCCEEEEeccCC--
Confidence             33222    22479999999874 6788999999999999999865321     11223455667788887776544  


Q ss_pred             chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          169 DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                         .+.++.+++++.++.+.+ ....++++++.++++.+.++...||+|+
T Consensus       285 ---~~~~~~~~~ll~~~~l~~-~~~~~~~~~~~~a~~~~~~~~~~~~~v~  330 (330)
T cd08245         285 ---RADLQEALDFAAEGKVKP-MIETFPLDQANEAYERMEKGDVRFRFVL  330 (330)
T ss_pred             ---HHHHHHHHHHHHcCCCcc-eEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence               567888899999999986 4467899999999999999988899875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.83  E-value=2.4e-18  Score=135.66  Aligned_cols=195  Identities=26%  Similarity=0.406  Sum_probs=158.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +..++.++..+.+||+++.+..  +++++++|+   |++|++++++++..|++|++++++ ++.+.++ ++|.+.+++..
T Consensus       119 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~~~~-~~g~~~~~~~~  196 (326)
T cd08272         119 MREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFAR-SLGADPIIYYR  196 (326)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech-HHHHHHH-HcCCCEEEecc
Confidence            3467788889999999987766  889999999   899999999999999999999987 8888887 89998888765


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      .  .+.+.++..+++ ++|+++||+|+......+++++++|+++.++....         ........+++++.++....
T Consensus       197 ~--~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  265 (326)
T cd08272         197 E--TVVEYVAEHTGGRGFDVVFDTVGGETLDASFEAVALYGRVVSILGGAT---------HDLAPLSFRNATYSGVFTLL  265 (326)
T ss_pred             h--hHHHHHHHhcCCCCCcEEEECCChHHHHHHHHHhccCCEEEEEecCCc---------cchhhHhhhcceEEEEEccc
Confidence            4  266778887777 89999999999888889999999999999986531         11222335777777766432


Q ss_pred             --c----cchHHHHHHHHHHHHHcCCCCccce-eeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          167 --H----FDLHQDFISMTCDALRAGKIQPLED-ISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       167 --~----~~~~~~~~~~~~~~~~~g~i~~~~~-~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                        .    +....+.+..+++++.++.+++.++ ..++++++.++++.+.++...+|+|+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  326 (326)
T cd08272         266 PLLTGEGRAHHGEILREAARLVERGQLRPLLDPRTFPLEEAAAAHARLESGSARGKIVIDV  326 (326)
T ss_pred             ccccccchhhHHHHHHHHHHHHHCCCcccccccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence              1    2334667888999999999987755 7889999999999999888889999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.83  E-value=7.7e-19  Score=138.48  Aligned_cols=173  Identities=24%  Similarity=0.254  Sum_probs=138.5

Q ss_pred             cchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHH
Q 043295           21 TSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLK   97 (223)
Q Consensus        21 ~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~   97 (223)
                      .+..++|.++.... +++++|+|+  |++|.+++|+|+..|++|++++.++++.+.++ ++|++.++++.+.        
T Consensus       139 ~~~~~~~~~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~--------  209 (319)
T cd08242         139 EPLAAALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALAR-RLGVETVLPDEAE--------  209 (319)
T ss_pred             hHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCcEEeCcccc--------
Confidence            45556776664444 889999999  99999999999999999999999999999999 7999887766431        


Q ss_pred             HhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccchHHHHH
Q 043295           98 RYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFI  175 (223)
Q Consensus        98 ~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  175 (223)
                        +++ ++|+++||+|+ ..+...+++++++|+++..+....      ...++...++.++.++.+.....        +
T Consensus       210 --~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~--------~  273 (319)
T cd08242         210 --SEGGGFDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAG------PASFDLTKAVVNEITLVGSRCGP--------F  273 (319)
T ss_pred             --ccCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCC------CCccCHHHheecceEEEEEeccc--------H
Confidence              233 89999999987 578889999999999998765432      22445556677788887765443        6


Q ss_pred             HHHHHHHHcCCC--CccceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          176 SMTCDALRAGKI--QPLEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       176 ~~~~~~~~~g~i--~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      +.+++++++|.+  .+.+...++++++.+||+.+.++. .+|+|++
T Consensus       274 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~k~vi~  318 (319)
T cd08242         274 APALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPG-ALKVLLR  318 (319)
T ss_pred             HHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCC-ceEEEeC
Confidence            778899999999  455778899999999999998765 4799886

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.83  E-value=2.6e-18  Score=136.31  Aligned_cols=189  Identities=27%  Similarity=0.296  Sum_probs=148.3

Q ss_pred             hhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           15 FANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      +++.+ .++.++++++.... +++++|+|+  |.+|.+++|+|+..|++ |+++.+++++.+.++ ++|++.++++.+. 
T Consensus       138 ~aa~~-~~~~~a~~~l~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~-  214 (334)
T cd08234         138 EAALA-EPLSCAVHGLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAK-KLGATETVDPSRE-  214 (334)
T ss_pred             HHhhh-hHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCeEEecCCCC-
Confidence            55544 77889999984444 899999999  88999999999999997 888998999999998 8999888887765 


Q ss_pred             cHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccc
Q 043295           91 DLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFD  169 (223)
Q Consensus        91 ~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  169 (223)
                      ++... +...++++|+++||+|+ ..+...+++++++|+++.+|.....    .....+...++.++.++.+....    
T Consensus       215 ~~~~~-~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----  285 (334)
T cd08234         215 DPEAQ-KEDNPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPD----ARVSISPFEIFQKELTIIGSFIN----  285 (334)
T ss_pred             CHHHH-HHhcCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCC----CCcccCHHHHHhCCcEEEEeccC----
Confidence            55544 33333489999999985 6788999999999999999875431    11233444555577777776532    


Q ss_pred             hHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          170 LHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       170 ~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                        .+.+++++++++++.+++.  +..+++++++.++++.+.+ ...||+|+
T Consensus       286 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi  333 (334)
T cd08234         286 --PYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS-GGALKVVV  333 (334)
T ss_pred             --HHHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence              3567889999999998753  5677899999999999998 77889986

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.82  E-value=2e-18  Score=136.47  Aligned_cols=183  Identities=20%  Similarity=0.261  Sum_probs=145.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++++.+++++.|||+++.... +++++|+|+   |++|++++++|+..|++|+++++    .+.++ ++|+++++++.+
T Consensus       138 ~~~~~~~~~~~~~a~~~l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~----~~~~~-~~g~~~~~~~~~  212 (325)
T cd08264         138 DELAASLPVAALTAYHALKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR----KDWLK-EFGADEVVDYDE  212 (325)
T ss_pred             HHHhhhhhhhhHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH----HHHHH-HhCCCeeecchH
Confidence            4578889999999999997744 899999999   89999999999999999998873    36676 899988887643


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCcc
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  168 (223)
                         ..+.+++.+ +++|+++|++|+..+..++++++++|+++.+|....     ....++...+..++.++.++....  
T Consensus       213 ---~~~~l~~~~-~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--  281 (325)
T cd08264         213 ---VEEKVKEIT-KMADVVINSLGSSFWDLSLSVLGRGGRLVTFGTLTG-----GEVKLDLSDLYSKQISIIGSTGGT--  281 (325)
T ss_pred             ---HHHHHHHHh-CCCCEEEECCCHHHHHHHHHhhccCCEEEEEecCCC-----CCCccCHHHHhhcCcEEEEccCCC--
Confidence               345566666 679999999999889999999999999999986421     123455666777777887765544  


Q ss_pred             chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcE
Q 043295          169 DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKK  216 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~  216 (223)
                         ++.++.+++++...  +..+..+++++++++|++.+.++...+|+
T Consensus       282 ---~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~kv  324 (325)
T cd08264         282 ---RKELLELVKIAKDL--KVKVWKTFKLEEAKEALKELFSKERDGRI  324 (325)
T ss_pred             ---HHHHHHHHHHHHcC--CceeEEEEcHHHHHHHHHHHHcCCCcccc
Confidence               46677788888544  44566788999999999999988877775

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.82  E-value=2.2e-18  Score=136.48  Aligned_cols=198  Identities=24%  Similarity=0.280  Sum_probs=147.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++++.++.++.|||+++....  .++++++|+   |++|.+++|+|+..|++|++++. +++.+.++ ++|+.. +++.
T Consensus       114 ~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~-~~g~~~-~~~~  190 (331)
T cd08273         114 AAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAALR-ELGATP-IDYR  190 (331)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHH-HcCCeE-EcCC
Confidence            3477889999999999998866  889999999   89999999999999999999997 88888887 898653 4544


Q ss_pred             CcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCch------------HHHHhh
Q 043295           88 EETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNM------------IDIVYK  155 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~------------~~~~~~  155 (223)
                      .. ++...  ...++++|+++||+|+.....++++++++|+++.+|.....+.  ....++.            .....+
T Consensus       191 ~~-~~~~~--~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  265 (331)
T cd08273         191 TK-DWLPA--MLTPGGVDVVFDGVGGESYEESYAALAPGGTLVCYGGNSSLLQ--GRRSLAALGSLLARLAKLKLLPTGR  265 (331)
T ss_pred             Cc-chhhh--hccCCCceEEEECCchHHHHHHHHHhcCCCEEEEEccCCCCCC--ccccccchhhhhhhhhhhcceeccc
Confidence            43 44433  3333489999999999888899999999999999987643211  0001100            011122


Q ss_pred             cceEEeeeccCc--cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          156 RIKIQGFLSTDH--FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       156 ~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                      ..+..+......  +....+.+..+++++.+|.+++.+..+++++++.++++.+.++...||+|+
T Consensus       266 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~  330 (331)
T cd08273         266 RATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRPKIAKRLPLSEVAEAHRLLESGKVVGKIVL  330 (331)
T ss_pred             eeEEEeechhcccCHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence            233323222110  233457888999999999999877788999999999999998888899886

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.82  E-value=7e-18  Score=133.10  Aligned_cols=195  Identities=22%  Similarity=0.302  Sum_probs=154.5

Q ss_pred             hhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           14 VFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ..++.+++++.|||+++.+..  .+|++++|+   |++|++++++++..|++|+.+. ++.+.+.+. ++|++.+++...
T Consensus       117 ~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~-~~~~~~~~~-~~g~~~~~~~~~  194 (325)
T cd08271         117 EEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC-SKRNFEYVK-SLGADHVIDYND  194 (325)
T ss_pred             HHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE-cHHHHHHHH-HcCCcEEecCCC
Confidence            477888999999999998876  899999999   6799999999999999999887 677778887 899988888777


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      . .+.+.++...++ ++|++++|+++......+.+++++|+++.++.....       .  ....+.++..+........
T Consensus       195 ~-~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~  264 (325)
T cd08271         195 E-DVCERIKEITGGRGVDAVLDTVGGETAAALAPTLAFNGHLVCIQGRPDA-------S--PDPPFTRALSVHEVALGAA  264 (325)
T ss_pred             c-cHHHHHHHHcCCCCCcEEEECCCcHhHHHHHHhhccCCEEEEEcCCCCC-------c--chhHHhhcceEEEEEeccc
Confidence            6 677788887776 899999999987777899999999999998754321       1  1122334444443332221


Q ss_pred             ----c----chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          168 ----F----DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       168 ----~----~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                          +    ....+.+.+++++++++.+++.....++++++.++++.+.++...+|+++++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~  325 (325)
T cd08271         265 HDHGDPAAWQDLRYAGEELLELLAAGKLEPLVIEVLPFEQLPEALRALKDRHTRGKIVVTI  325 (325)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHCCCeeeccceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence                1    2345667889999999999877667789999999999999888889999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.82  E-value=7.1e-18  Score=135.35  Aligned_cols=185  Identities=22%  Similarity=0.295  Sum_probs=143.6

Q ss_pred             cchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecC--CcccHHH
Q 043295           21 TSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYK--EETDLKA   94 (223)
Q Consensus        21 ~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~   94 (223)
                      .++.++|+++.... .++++|+|+  |++|.+++|+|+..|++ |++++.++++.+.++ ++|++.++++.  +. ++.+
T Consensus       165 ~~~~~a~~~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~-~~~~  242 (364)
T PLN02702        165 EPLSVGVHACRRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAK-QLGADEIVLVSTNIE-DVES  242 (364)
T ss_pred             hHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEEecCcccc-cHHH
Confidence            45566888874444 889999999  99999999999999995 777777888888888 89998887653  23 5666


Q ss_pred             HHHHh---CCCCccEEEcCCC-hHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccch
Q 043295           95 TLKRY---FPDGIDVYFDNVG-GEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDL  170 (223)
Q Consensus        95 ~i~~~---~~~~~d~vid~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  170 (223)
                      .+...   +++++|++|||+| +..+...+++++++|+++.+|....      ...........+++++.++...     
T Consensus       243 ~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~i~~~~~~-----  311 (364)
T PLN02702        243 EVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHN------EMTVPLTPAAAREVDVVGVFRY-----  311 (364)
T ss_pred             HHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCC------CCcccHHHHHhCccEEEEeccC-----
Confidence            66554   2348999999999 4788999999999999999986532      1123455667788888876543     


Q ss_pred             HHHHHHHHHHHHHcCCCC--ccceeeecc--CCHHHHHHHhHcCCCcCcEEEE
Q 043295          171 HQDFISMTCDALRAGKIQ--PLEDISNGV--DSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       171 ~~~~~~~~~~~~~~g~i~--~~~~~~~~l--~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                       ...++.+++++++|.+.  +.+..+|++  +++.+|++.+.+++..+|+|+.
T Consensus       312 -~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~  363 (364)
T PLN02702        312 -RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN  363 (364)
T ss_pred             -hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence             24567889999999986  345667555  7999999999988888999985

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.81  E-value=4.4e-18  Score=134.75  Aligned_cols=183  Identities=17%  Similarity=0.144  Sum_probs=144.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      +.+++++++++.|||+++.... +++++++|+  |++|++++|+++..|++|+++++++++.+.++ ++|++.++++...
T Consensus       143 ~~~~~~~~~~~~ta~~~~~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~~  221 (329)
T cd08298         143 DEEAAPLLCAGIIGYRALKLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELAR-ELGADWAGDSDDL  221 (329)
T ss_pred             HHHhhHhhhhhHHHHHHHHhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHH-HhCCcEEeccCcc
Confidence            4478899999999999993333 899999999  99999999999999999999999999999997 8999887766432


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCC-hHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCcc
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVG-GEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  168 (223)
                                .++++|+++++.+ +..+...+++++++|+++.+|....     .....+... +.++..+.++....  
T Consensus       222 ----------~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~-~~~~~~i~~~~~~~--  283 (329)
T cd08298         222 ----------PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMS-----DIPAFDYEL-LWGEKTIRSVANLT--  283 (329)
T ss_pred             ----------CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCC-----CCCccchhh-hhCceEEEEecCCC--
Confidence                      1237999999866 4688999999999999999875321     111222222 34555565554333  


Q ss_pred             chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          169 DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                         .+.+..++++++++.+++. ..+++++++.+|++.+.+++..||+|+
T Consensus       284 ---~~~~~~~~~l~~~~~l~~~-~~~~~~~~~~~a~~~~~~~~~~~~~v~  329 (329)
T cd08298         284 ---RQDGEEFLKLAAEIPIKPE-VETYPLEEANEALQDLKEGRIRGAAVL  329 (329)
T ss_pred             ---HHHHHHHHHHHHcCCCCce-EEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence               5567889999999999874 577899999999999999999999874

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.81  E-value=1.5e-17  Score=131.91  Aligned_cols=204  Identities=24%  Similarity=0.362  Sum_probs=158.2

Q ss_pred             hhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           14 VFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      .+++.++.++.+||+++....  +++++|+|+   |++|++++|+|+.. +..++... .+++.+.++ ++|++.++++.
T Consensus       114 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~~~~~~~-~~~~~~~~~-~~g~~~~~~~~  191 (337)
T cd08275         114 EEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVTVVGTA-SASKHEALK-ENGVTHVIDYR  191 (337)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCcEEEEeC-CHHHHHHHH-HcCCcEEeeCC
Confidence            467788889999999987766  889999999   89999999999998 44444333 355778887 89998888887


Q ss_pred             CcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccc-----------cCCCCchHHHHhhc
Q 043295           88 EETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADAS-----------KRAVPNMIDIVYKR  156 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-----------~~~~~~~~~~~~~~  156 (223)
                      .. ++.+.++..+++++|+++||+|+......+++++++|+++.+|.....+...           ..........+.++
T Consensus       192 ~~-~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (337)
T cd08275         192 TQ-DYVEEVKKISPEGVDIVLDALGGEDTRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISEN  270 (337)
T ss_pred             CC-cHHHHHHHHhCCCceEEEECCcHHHHHHHHHhhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcC
Confidence            76 7888888877668999999999988889999999999999998654321000           00112234567788


Q ss_pred             ceEEeeeccCc---cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          157 IKIQGFLSTDH---FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       157 ~~~~g~~~~~~---~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      .++.++.....   .......+.++++++.++.+.+.....++++++.++++.+.++...||+++++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  337 (337)
T cd08275         271 KSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKPKIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP  337 (337)
T ss_pred             ceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCCceeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            88888775432   11223467888899999999888777889999999999999988889999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.80  E-value=4.3e-18  Score=136.01  Aligned_cols=205  Identities=19%  Similarity=0.209  Sum_probs=144.0

Q ss_pred             hhhhhccccchhhHHHHHHHH--h-hCCCEEEEE---CchHHHHHHHHHHc-CC-eEEEEecCHHHHHHHHHhhCCCeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEI--S-QKGEKVFVS---GAYGHLVGQYAKLG-GC-YVVGSAGTNEKVAILKEKLGFDDAF   84 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~--~-~~g~~vlI~---g~vG~~a~qla~~~-g~-~v~~~~~~~~~~~~~~~~~g~~~~~   84 (223)
                      +++++.++.++.|||+++...  . ++|++++|+   |++|.+++|+|+.. |. +|+++. ++++.+.++ ++|++.++
T Consensus       125 ~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~-~~g~~~~i  202 (352)
T cd08247         125 LEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNK-KLGADHFI  202 (352)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHH-HhCCCEEE
Confidence            447888899999999998876  4 789999999   68999999999987 55 677776 556667777 89999999


Q ss_pred             ecCCccc---HHHH-HHHhCCC-CccEEEcCCCh-HHHHHHHHhhc---cCcEEEEEcccccccccccCC-----CCchH
Q 043295           85 NYKEETD---LKAT-LKRYFPD-GIDVYFDNVGG-EMLEAAVANMN---LFGRVAACGVISECADASKRA-----VPNMI  150 (223)
Q Consensus        85 ~~~~~~~---~~~~-i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~---~~G~~v~~g~~~~~~~~~~~~-----~~~~~  150 (223)
                      ++.+. +   +... ++..+++ ++|++|||+|+ ......+++++   ++|+++.++.....+......     .....
T Consensus       203 ~~~~~-~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~  281 (352)
T cd08247         203 DYDAH-SGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANA  281 (352)
T ss_pred             ecCCC-cccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEeCCCcccccchhhhhccccchhh
Confidence            87765 4   4444 4444434 99999999998 67888999999   999999875322110000000     00001


Q ss_pred             HHHhhcceEEeeeccCc-cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          151 DIVYKRIKIQGFLSTDH-FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       151 ~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ..+.++..+..+..... .....+.+..+++++.+|.+++.+..+++++++.+|++.+.+++..||+|+++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~  352 (352)
T cd08247         282 RKLFGSLGLWSYNYQFFLLDPNADWIEKCAELIADGKVKPPIDSVYPFEDYKEAFERLKSNRAKGKVVIKV  352 (352)
T ss_pred             hhhhhhhcCCCcceEEEEecCCHHHHHHHHHHHhCCCeEeeeccEecHHHHHHHHHHHHcCCCCCcEEEeC
Confidence            11222222222111100 00113567889999999999887778899999999999999988899999864

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.80  E-value=3.7e-18  Score=136.25  Aligned_cols=202  Identities=22%  Similarity=0.334  Sum_probs=145.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hC----CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QK----GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA   83 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~----g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~   83 (223)
                      ++.++.+++++.|||+++.+..  .+    |++|+|+   |++|.+++++|+..|++|+++.++ ++.+.++ ++|.+.+
T Consensus       133 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~~-~~g~~~~  210 (350)
T cd08248         133 HEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLVK-SLGADDV  210 (350)
T ss_pred             HHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHHH-HhCCceE
Confidence            3478889999999999998776  43    9999999   899999999999999999998865 5667777 8999888


Q ss_pred             eecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccc-cC--CCC-chHHHHhhcce-
Q 043295           84 FNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADAS-KR--AVP-NMIDIVYKRIK-  158 (223)
Q Consensus        84 ~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-~~--~~~-~~~~~~~~~~~-  158 (223)
                      ++..+. ++.+.+...  +++|+++||+|+.....++++++++|+++.+|......... ..  ... ....+...... 
T Consensus       211 ~~~~~~-~~~~~l~~~--~~vd~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (350)
T cd08248         211 IDYNNE-DFEEELTER--GKFDVILDTVGGDTEKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKS  287 (350)
T ss_pred             EECCCh-hHHHHHHhc--CCCCEEEECCChHHHHHHHHHhccCCEEEEecCCcccccccccccchhhhhHHHHHHHHHHH
Confidence            887765 555555432  37999999999988999999999999999998653211000 00  000 00011111100 


Q ss_pred             E-Eeeec-cCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEE
Q 043295          159 I-QGFLS-TDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVR  219 (223)
Q Consensus       159 ~-~g~~~-~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~  219 (223)
                      + .+... +.......+.+.++++++.+|.+.+.+...++++++.++++.+.++...+|++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  350 (350)
T cd08248         288 LLKGSHYRWGFFSPSGSALDELAKLVEDGKIKPVIDKVFPFEEVPEAYEKVESGHARGKTVIK  350 (350)
T ss_pred             HhcCCCeeEEEECCCHHHHHHHHHHHhCCCEecccceeecHHHHHHHHHHHhcCCCceEEEeC
Confidence            0 00000 0001123567888999999999988777889999999999999988878888863

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.79  E-value=8.8e-18  Score=129.89  Aligned_cols=188  Identities=23%  Similarity=0.225  Sum_probs=141.9

Q ss_pred             hhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhC-CCeeeecCC
Q 043295           14 VFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLG-FDDAFNYKE   88 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g-~~~~~~~~~   88 (223)
                      .+++.+ .++.|||+++.... +++++++|+  |++|.+++|+|+..|++ |+++++++++.+.++ ++| .+.+++..+
T Consensus        75 ~~aa~~-~~~~ta~~~~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~  152 (277)
T cd08255          75 ERAALT-ALAATALNGVRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAE-ALGPADPVAADTA  152 (277)
T ss_pred             HHhHHH-HHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH-HcCCCccccccch
Confidence            366666 78999999987544 899999999  99999999999999998 999999999999888 888 455544322


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      .         .+.+ ++|++|||++. ......+++++++|+++.+|.....      .......+..+..++.+.....
T Consensus       153 ~---------~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~  217 (277)
T cd08255         153 D---------EIGGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLK------PLLLGEEFHFKRLPIRSSQVYG  217 (277)
T ss_pred             h---------hhcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCC------ccccHHHHHhccCeEEeecccc
Confidence            1         1233 89999999885 6788999999999999999875431      1111233444555776665443


Q ss_pred             cc-------chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCC-CcCcEEE
Q 043295          167 HF-------DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGD-NIGKKFV  218 (223)
Q Consensus       167 ~~-------~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~-~~gk~v~  218 (223)
                      ..       ....+.++++++++.+|.+++.+...++++++.++++.+.+++ ...|+++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~~~  277 (277)
T cd08255         218 IGRYDRPRRWTEARNLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDPPECLKVVL  277 (277)
T ss_pred             cccccccccccccccHHHHHHHHHcCCccccccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence            20       1123578889999999999887778889999999999998773 4457653

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.78  E-value=2.3e-17  Score=129.11  Aligned_cols=185  Identities=22%  Similarity=0.376  Sum_probs=148.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +..++.++..+.++|+++....  .++++++|+   |++|.+++++++..|++|++++.++ +.+.++ ++|.+.+++..
T Consensus       119 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~-~~g~~~~~~~~  196 (309)
T cd05289         119 FEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLR-SLGADEVIDYT  196 (309)
T ss_pred             HHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHH-HcCCCEEEeCC
Confidence            3467778888999999998876  889999999   7899999999999999999998777 778887 89988888776


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      .. ++.+    .+.+ ++|+++||+|+.....++++++++|+++.+|.....        ..  ..+.++.++.+.....
T Consensus       197 ~~-~~~~----~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~--------~~--~~~~~~~~~~~~~~~~  261 (309)
T cd05289         197 KG-DFER----AAAPGGVDAVLDTVGGETLARSLALVKPGGRLVSIAGPPPA--------EQ--AAKRRGVRAGFVFVEP  261 (309)
T ss_pred             CC-chhh----ccCCCCceEEEECCchHHHHHHHHHHhcCcEEEEEcCCCcc--------hh--hhhhccceEEEEEecc
Confidence            64 4443    3334 899999999998889999999999999999864321        00  3344566665554432


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                      .    ...+.+++++++++.+++.+...++++++.++++.+.++...+|+|+
T Consensus       262 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  309 (309)
T cd05289         262 D----GEQLAELAELVEAGKLRPVVDRVFPLEDAAEAHERLESGHARGKVVL  309 (309)
T ss_pred             c----HHHHHHHHHHHHCCCEEEeeccEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence            1    56788899999999998777778999999999999998888888874

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.78  E-value=3.8e-17  Score=128.57  Aligned_cols=191  Identities=23%  Similarity=0.323  Sum_probs=141.8

Q ss_pred             hhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           14 VFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++.+++++.+||+++....  +++++|+|+   |++|++++++|+..|++|++++.+ ++.+.++ ++|.+.+++...
T Consensus       119 ~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~-~~g~~~~~~~~~  196 (319)
T cd08267         119 EEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVR-SLGADEVIDYTT  196 (319)
T ss_pred             HHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHH-HcCCCEeecCCC
Confidence            478889999999999998877  899999999   789999999999999999999865 7888887 899988887765


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCChH--HHHHHHHhhccCcEEEEEcccccccccccCCCCc--hHHHHhhcceEEeee
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGGE--MLEAAVANMNLFGRVAACGVISECADASKRAVPN--MIDIVYKRIKIQGFL  163 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~  163 (223)
                      . ++.   +..+.+ ++|+++||+|+.  .....+..++++|+++.+|......    .....  ..........+....
T Consensus       197 ~-~~~---~~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  268 (319)
T cd08267         197 E-DFV---ALTAGGEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGL----LLVLLLLPLTLGGGGRRLKFFL  268 (319)
T ss_pred             C-Ccc---hhccCCCCCcEEEECCCchHHHHHHhhhccCCCCEEEEeccccccc----cccccccchhhccccceEEEEE
Confidence            4 443   334444 899999999953  3334444599999999998754321    00100  011111122222222


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          164 STDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                      ...  .  .+.+.++++++.++.+++.+..+++++++.++++.+.++...+|+++
T Consensus       269 ~~~--~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~~vvv  319 (319)
T cd08267         269 AKP--N--AEDLEQLAELVEEGKLKPVIDSVYPLEDAPEAYRRLKSGRARGKVVI  319 (319)
T ss_pred             ecC--C--HHHHHHHHHHHHCCCeeeeeeeEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence            211  1  56788899999999998877788999999999999998888888874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.77  E-value=9.8e-17  Score=125.82  Aligned_cols=157  Identities=27%  Similarity=0.302  Sum_probs=129.8

Q ss_pred             hhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEe--cCHHHHHHHHHhhCCCeeeecCC
Q 043295           15 FANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSA--GTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~--~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++ ++.++.|||+++....  +++++|+|.  |++|.+++|+|+..|++|+.++  .++++.+.++ ++|++.+ ++..
T Consensus       142 ~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~-~~g~~~~-~~~~  218 (306)
T cd08258         142 AAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAK-ELGADAV-NGGE  218 (306)
T ss_pred             HHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHH-HhCCccc-CCCc
Confidence            444 8888999999987766  889999999  9999999999999999988774  3455777778 8999888 7776


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      . ++.+.+...+++ ++|+++||+|+ ..+...+++++++|+++.+|....     ....++...++.+++++.|+....
T Consensus       219 ~-~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~  292 (306)
T cd08258         219 E-DLAELVNEITDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGP-----LAASIDVERIIQKELSVIGSRSST  292 (306)
T ss_pred             C-CHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCC-----CCcccCHHHHhhcCcEEEEEecCc
Confidence            6 788888887776 89999999975 678889999999999999998652     123456677778999999999876


Q ss_pred             ccchHHHHHHHHHHHHHcC
Q 043295          167 HFDLHQDFISMTCDALRAG  185 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g  185 (223)
                           ++.++.+++++++|
T Consensus       293 -----~~~~~~~~~~~~~~  306 (306)
T cd08258         293 -----PASWETALRLLASG  306 (306)
T ss_pred             -----hHhHHHHHHHHhcC
Confidence                 56788899888875

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.73  E-value=6.6e-18  Score=115.51  Aligned_cols=121  Identities=26%  Similarity=0.393  Sum_probs=81.2

Q ss_pred             hCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC--hHHH-HHHHHhhccCcEEEEEcccccccccccCCCCchHHH--
Q 043295           78 LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG--GEML-EAAVANMNLFGRVAACGVISECADASKRAVPNMIDI--  152 (223)
Q Consensus        78 ~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g--~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~--  152 (223)
                      ||+++++||+.+ ++      ..++++|+||||+|  ++.+ ..++++| ++|+++.++. .          ......  
T Consensus         1 LGAd~vidy~~~-~~------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~-~----------~~~~~~~~   61 (127)
T PF13602_consen    1 LGADEVIDYRDT-DF------AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG-D----------LPSFARRL   61 (127)
T ss_dssp             CT-SEEEETTCS-HH------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S-H----------HHHHHHHH
T ss_pred             CCcCEEecCCCc-cc------cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC-c----------ccchhhhh
Confidence            689999999965 55      22348999999999  7655 7778888 9999999873 1          011111  


Q ss_pred             HhhcceEEeeec-cCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEE
Q 043295          153 VYKRIKIQGFLS-TDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFV  218 (223)
Q Consensus       153 ~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~  218 (223)
                      .....++..... ... +...+.++++.+++++|+++|.+..+|||+++.+|++.+.+++..||+||
T Consensus        62 ~~~~~~~~~~~~~~~~-~~~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   62 KGRSIRYSFLFSVDPN-AIRAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             HCHHCEEECCC-H--H-HHHHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             cccceEEEEEEecCCC-chHHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence            122233322221 110 12456799999999999999999999999999999999999999999997

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.72  E-value=8.5e-16  Score=118.08  Aligned_cols=146  Identities=31%  Similarity=0.429  Sum_probs=122.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++++.++.++.|||+++....  +++++|+|+  |++|++++|+++..|.+|+++++++++.+.++ ++|.+.++++.+
T Consensus       109 ~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~~~~~~~  187 (271)
T cd05188         109 LEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK-ELGADHVIDYKE  187 (271)
T ss_pred             HHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HhCCceeccCCc
Confidence            4578888899999999998887  889999999  55999999999999999999999999999998 899888888777


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      . +..+.+. ...+ ++|+++|++++ ......+++++++|+++.++......     ........+.++.++.++....
T Consensus       188 ~-~~~~~~~-~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  260 (271)
T cd05188         188 E-DLEEELR-LTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGP-----PLDDLRRLLFKELTIIGSTGGT  260 (271)
T ss_pred             C-CHHHHHH-HhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCCCC-----CcccHHHHHhcceEEEEeecCC
Confidence            6 6666666 4444 89999999998 78889999999999999998765421     1222456678899999988765

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.47  E-value=1.8e-12  Score=104.02  Aligned_cols=173  Identities=10%  Similarity=0.090  Sum_probs=128.8

Q ss_pred             hhHHHHHHHHh---hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHH
Q 043295           24 FTAYVGFYEIS---QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKR   98 (223)
Q Consensus        24 ~ta~~~l~~~~---~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~   98 (223)
                      ...+.++.+..   -+|++|+|.  |++|+.+++.++..|++|+++..++.+.+.++ .+|++.+ +      ..+.+  
T Consensus       186 ~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-~~G~~~~-~------~~e~v--  255 (413)
T cd00401         186 ESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA-MEGYEVM-T------MEEAV--  255 (413)
T ss_pred             hhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH-hcCCEEc-c------HHHHH--
Confidence            34455555543   589999999  99999999999999999999999999999998 8888433 1      11222  


Q ss_pred             hCCCCccEEEcCCChH-HHHHH-HHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccchHHHHHH
Q 043295           99 YFPDGIDVYFDNVGGE-MLEAA-VANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFIS  176 (223)
Q Consensus        99 ~~~~~~d~vid~~g~~-~~~~~-~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  176 (223)
                         .++|+||+|+|.. .+... ++.++++|.++.+|..        ...++...+..+.+++.++.....    ...++
T Consensus       256 ---~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~--------~~eId~~~L~~~el~i~g~~~~~~----~~~~~  320 (413)
T cd00401         256 ---KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF--------DVEIDVKGLKENAVEVVNIKPQVD----RYELP  320 (413)
T ss_pred             ---cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC--------CCccCHHHHHhhccEEEEccCCcc----eEEcC
Confidence               2489999999974 56665 8999999999999853        225777888888898888776531    11233


Q ss_pred             --HHHHHHHcCCC---Cccceee-----eccC-CHHHHHHHhHcCCC-cCcEEEEec
Q 043295          177 --MTCDALRAGKI---QPLEDIS-----NGVD-SIPSAFTGFFRGDN-IGKKFVRIA  221 (223)
Q Consensus       177 --~~~~~~~~g~i---~~~~~~~-----~~l~-~~~~a~~~~~~~~~-~gk~v~~~~  221 (223)
                        ..+.++.+|.+   .+.+.+.     ++|+ ++.++++.+.++.. .-|+++.++
T Consensus       321 ~g~aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~  377 (413)
T cd00401         321 DGRRIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK  377 (413)
T ss_pred             CcchhhhhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence              58899999988   3334444     5788 99999999987764 347776653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.44  E-value=6.1e-12  Score=103.41  Aligned_cols=147  Identities=14%  Similarity=0.081  Sum_probs=106.6

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCc------------ccHHHHHHHh
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEE------------TDLKATLKRY   99 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~------------~~~~~~i~~~   99 (223)
                      .++++|+|.  |++|+++++.|+.+|++|++++.++++++.++ ++|++.+ +|..+.            .++.+..++.
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae-slGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE-SMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            478999999  99999999999999999999999999999999 8999854 554331            0233333333


Q ss_pred             -CC--CCccEEEcCCChH------H-HHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHh-hcceEEeeeccCcc
Q 043295          100 -FP--DGIDVYFDNVGGE------M-LEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVY-KRIKIQGFLSTDHF  168 (223)
Q Consensus       100 -~~--~~~d~vid~~g~~------~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~  168 (223)
                       .+  +++|++|+|+|.+      . .+.+++.++++|+++.+|...+.+.   ..+.+...++. +++++.|....+  
T Consensus       242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~---e~t~~~~~v~~~~gVti~Gv~n~P--  316 (509)
T PRK09424        242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNC---ELTVPGEVVVTDNGVTIIGYTDLP--  316 (509)
T ss_pred             HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCc---ccccCccceEeECCEEEEEeCCCc--
Confidence             33  2699999999852      3 4899999999999999998543211   11222334554 788888876433  


Q ss_pred             chHHHHHHHHHHHHHcCCCCcc
Q 043295          169 DLHQDFISMTCDALRAGKIQPL  190 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~~  190 (223)
                         .++..+..+++.++.+...
T Consensus       317 ---~~~p~~As~lla~~~i~l~  335 (509)
T PRK09424        317 ---SRLPTQSSQLYGTNLVNLL  335 (509)
T ss_pred             ---hhHHHHHHHHHHhCCccHH
Confidence               3445558888888877643

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.59  E-value=4.8e-07  Score=74.75  Aligned_cols=104  Identities=19%  Similarity=0.192  Sum_probs=79.4

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCc------------ccHHHHHHHh
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEE------------TDLKATLKRY   99 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~------------~~~~~~i~~~   99 (223)
                      .++.+++|.  |.+|+++++.++.+|++|++.+.++++++.++ ++|++.+ ++..+.            +++.+..++.
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~-~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ-SMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            367899999  99999999999999999999999999999999 8998653 332110            1333333333


Q ss_pred             CC---CCccEEEcCC---Ch--H--HHHHHHHhhccCcEEEEEccccccc
Q 043295          100 FP---DGIDVYFDNV---GG--E--MLEAAVANMNLFGRVAACGVISECA  139 (223)
Q Consensus       100 ~~---~~~d~vid~~---g~--~--~~~~~~~~l~~~G~~v~~g~~~~~~  139 (223)
                      +.   .++|++|+|+   |.  +  ..+...+.+++|+.++.++...+.+
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn  290 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGN  290 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCC
Confidence            33   2799999999   64  2  4677899999999999998765544

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.46  E-value=3.6e-06  Score=65.04  Aligned_cols=167  Identities=15%  Similarity=0.128  Sum_probs=98.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      .++++||.. ++.|..+.++++..|.  +|++++.++..++.+++.   +|...+- .... ++. .+ ...++.+|+|+
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~-~~~~-d~~-~l-~~~~~~fD~Vi  151 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVE-FRLG-EIE-AL-PVADNSVDVII  151 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEE-EEEc-chh-hC-CCCCCceeEEE
Confidence            789999999 5559988888888775  799999999998888731   3333221 1111 221 11 11223799988


Q ss_pred             cCC------C-hHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccchHHHHHHHHHHH
Q 043295          109 DNV------G-GEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDA  181 (223)
Q Consensus       109 d~~------g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  181 (223)
                      ...      . ...+..++++|++||+++..+.....       ...  ....+...+.+......     ....++.++
T Consensus       152 ~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~-----~~~~e~~~~  217 (272)
T PRK11873        152 SNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG-------ELP--EEIRNDAELYAGCVAGA-----LQEEEYLAM  217 (272)
T ss_pred             EcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC-------CCC--HHHHHhHHHHhccccCC-----CCHHHHHHH
Confidence            432      2 24688999999999999987754321       111  11112211111111110     013345556


Q ss_pred             HHc-CCCCc--cceeeeccCCHHHHHHHh--HcCCCcCcEEEE
Q 043295          182 LRA-GKIQP--LEDISNGVDSIPSAFTGF--FRGDNIGKKFVR  219 (223)
Q Consensus       182 ~~~-g~i~~--~~~~~~~l~~~~~a~~~~--~~~~~~gk~v~~  219 (223)
                      +++ |....  .....++++++.++++.+  .+++..++.+..
T Consensus       218 l~~aGf~~v~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  260 (272)
T PRK11873        218 LAEAGFVDITIQPKREYRIPDAREFLEDWGIAPGRQLDGYIVS  260 (272)
T ss_pred             HHHCCCCceEEEeccceecccHHHHHHHhccccccccCceEEE
Confidence            665 43322  233456889999999988  665555666544

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.32  E-value=1.6e-05  Score=64.03  Aligned_cols=99  Identities=16%  Similarity=0.160  Sum_probs=70.1

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC--
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV--  111 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~--  111 (223)
                      ++.+|+|.  |.+|+.+++.++.+|++|+++++++++.+.+.+.++......+.+.+.+.+.+.     .+|++|+|+  
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~-----~aDvVI~a~~~  240 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVK-----RADLLIGAVLI  240 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHc-----cCCEEEEcccc
Confidence            34568888  999999999999999999999999888877764555432222222212333322     489999998  


Q ss_pred             -Ch--H--HHHHHHHhhccCcEEEEEccccccc
Q 043295          112 -GG--E--MLEAAVANMNLFGRVAACGVISECA  139 (223)
Q Consensus       112 -g~--~--~~~~~~~~l~~~G~~v~~g~~~~~~  139 (223)
                       +.  .  .....+..+++++.++.++...+.+
T Consensus       241 ~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~  273 (370)
T TIGR00518       241 PGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGC  273 (370)
T ss_pred             CCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCC
Confidence             32  2  1367778899999999998765544

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.27  E-value=1.7e-05  Score=64.44  Aligned_cols=100  Identities=16%  Similarity=0.147  Sum_probs=75.7

Q ss_pred             hhHHHHHHHHh---hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHH
Q 043295           24 FTAYVGFYEIS---QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKR   98 (223)
Q Consensus        24 ~ta~~~l~~~~---~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~   98 (223)
                      ..+|+++.+..   -.|++|+|.  |.+|..+++.++.+|++|+++..++.+...+. ..|+. +.      ++.+.+. 
T Consensus       196 ~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-~~G~~-v~------~l~eal~-  266 (425)
T PRK05476        196 ESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAA-MDGFR-VM------TMEEAAE-  266 (425)
T ss_pred             hhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-hcCCE-ec------CHHHHHh-
Confidence            44566666663   489999999  99999999999999999999998887766665 55653 22      2222221 


Q ss_pred             hCCCCccEEEcCCChH-HHH-HHHHhhccCcEEEEEcccc
Q 043295           99 YFPDGIDVYFDNVGGE-MLE-AAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        99 ~~~~~~d~vid~~g~~-~~~-~~~~~l~~~G~~v~~g~~~  136 (223)
                          ++|++++|+|.. .+. ..+..+++++.++.+|...
T Consensus       267 ----~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        267 ----LGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             ----CCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence                599999999974 454 6788999999999998654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.24  E-value=2.5e-05  Score=63.18  Aligned_cols=99  Identities=18%  Similarity=0.215  Sum_probs=73.4

Q ss_pred             hHHHHHHHHh---hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHh
Q 043295           25 TAYVGFYEIS---QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRY   99 (223)
Q Consensus        25 ta~~~l~~~~---~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~   99 (223)
                      .++.++.+..   ..|++|+|.  |.+|..+++.++.+|++|+++..++.+...+. ..|+ .+.      +..+.+   
T Consensus       180 s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-~~G~-~v~------~leeal---  248 (406)
T TIGR00936       180 STIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-MDGF-RVM------TMEEAA---  248 (406)
T ss_pred             hHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-hcCC-EeC------CHHHHH---
Confidence            3444444543   579999999  99999999999999999999988887766666 5665 222      122222   


Q ss_pred             CCCCccEEEcCCChH-HHH-HHHHhhccCcEEEEEcccc
Q 043295          100 FPDGIDVYFDNVGGE-MLE-AAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       100 ~~~~~d~vid~~g~~-~~~-~~~~~l~~~G~~v~~g~~~  136 (223)
                        .+.|++|+++|.. .+. ..+..+++++.++.+|...
T Consensus       249 --~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       249 --KIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             --hcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence              1479999999974 455 4788999999999988643

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02494 adenosylhomocysteinase

Probab=98.22  E-value=2e-05  Score=64.46  Aligned_cols=97  Identities=14%  Similarity=0.157  Sum_probs=74.7

Q ss_pred             HHHHHHHHh---hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhC
Q 043295           26 AYVGFYEIS---QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYF  100 (223)
Q Consensus        26 a~~~l~~~~---~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~  100 (223)
                      .+.++.+..   -.|++|+|.  |.+|..+++.++.+|++|+++..++.+...+. ..|+..+       +..+.+.   
T Consensus       240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-~~G~~vv-------~leEal~---  308 (477)
T PLN02494        240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-MEGYQVL-------TLEDVVS---  308 (477)
T ss_pred             HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-hcCCeec-------cHHHHHh---
Confidence            355555554   579999999  99999999999999999999998887766666 5666422       2222332   


Q ss_pred             CCCccEEEcCCChHH--HHHHHHhhccCcEEEEEccc
Q 043295          101 PDGIDVYFDNVGGEM--LEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       101 ~~~~d~vid~~g~~~--~~~~~~~l~~~G~~v~~g~~  135 (223)
                        ..|+++++.|...  ....+..|++++.++.+|..
T Consensus       309 --~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        309 --EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             --hCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCC
Confidence              3899999999753  47899999999999999874

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.22  E-value=2.7e-05  Score=60.76  Aligned_cols=93  Identities=17%  Similarity=0.253  Sum_probs=72.0

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -.+.+++|.  |.+|..+++.++..|++|++.++++++.+.++ ++|+..+ ...   ++.+.+.     ++|+||+|++
T Consensus       150 l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-~~G~~~~-~~~---~l~~~l~-----~aDiVI~t~p  219 (296)
T PRK08306        150 IHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT-EMGLSPF-HLS---ELAEEVG-----KIDIIFNTIP  219 (296)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCeee-cHH---HHHHHhC-----CCCEEEECCC
Confidence            368999999  99999999999999999999999988888888 7886432 111   2222222     4999999997


Q ss_pred             hH-HHHHHHHhhccCcEEEEEccccc
Q 043295          113 GE-MLEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       113 ~~-~~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      .. .....+..+++++.++.++..++
T Consensus       220 ~~~i~~~~l~~~~~g~vIIDla~~pg  245 (296)
T PRK08306        220 ALVLTKEVLSKMPPEALIIDLASKPG  245 (296)
T ss_pred             hhhhhHHHHHcCCCCcEEEEEccCCC
Confidence            64 34566788999999999987654

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.92  E-value=0.00013  Score=48.14  Aligned_cols=93  Identities=23%  Similarity=0.266  Sum_probs=64.7

Q ss_pred             CCCEEEEE-CchHHHHHHHHH-HcCCeEEEEecCHHHHHHHHHhh---CC-CeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           36 KGEKVFVS-GAYGHLVGQYAK-LGGCYVVGSAGTNEKVAILKEKL---GF-DDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        36 ~g~~vlI~-g~vG~~a~qla~-~~g~~v~~~~~~~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      |+.+||-. .+.|..+..+++ ..+++|++++.+++-.+.+++..   +. +.+ ..... ++ . ......++||+|+.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i-~~~~~-d~-~-~~~~~~~~~D~v~~   76 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRI-TFVQG-DA-E-FDPDFLEPFDLVIC   76 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTE-EEEES-CC-H-GGTTTSSCEEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCe-EEEEC-cc-c-cCcccCCCCCEEEE
Confidence            67889888 889999999999 46889999999999888887544   22 222 12222 33 1 11112237999987


Q ss_pred             CC-Ch----H------HHHHHHHhhccCcEEEEE
Q 043295          110 NV-GG----E------MLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       110 ~~-g~----~------~~~~~~~~l~~~G~~v~~  132 (223)
                      .. ..    .      .++...+.|+|+|+++.-
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence            66 21    1      267788899999999864

...

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.82  E-value=0.00015  Score=53.92  Aligned_cols=77  Identities=21%  Similarity=0.376  Sum_probs=60.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC----CeeeecCCcccHHHHHHHhCCC--CccE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF----DDAFNYKEETDLKATLKRYFPD--GIDV  106 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~i~~~~~~--~~d~  106 (223)
                      +++.++|+   +|+|.+.++.....|++|+.++|+.++++.+..+++.    ...+|-.+.......+......  .+|+
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            45678888   8999999999999999999999999999999888883    3345555543444555555554  6999


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      .++..|
T Consensus        85 LvNNAG   90 (246)
T COG4221          85 LVNNAG   90 (246)
T ss_pred             EEecCC
Confidence            999887

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.75  E-value=0.00021  Score=49.17  Aligned_cols=95  Identities=20%  Similarity=0.202  Sum_probs=63.0

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCC--eeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFD--DAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      -++.+++|.  |++|.+++..+...|+ +|+.+.|+.++.+.+.++++..  .+.++.+   +.+.+.     .+|+||+
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~---~~~~~~-----~~DivI~   81 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED---LEEALQ-----EADIVIN   81 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG---HCHHHH-----TESEEEE
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH---HHHHHh-----hCCeEEE
Confidence            578999999  9999999999999999 5999999999888877677432  2344433   222222     3999999


Q ss_pred             CCChHHHHHHHHhhccC----cEEEEEccccc
Q 043295          110 NVGGEMLEAAVANMNLF----GRVAACGVISE  137 (223)
Q Consensus       110 ~~g~~~~~~~~~~l~~~----G~~v~~g~~~~  137 (223)
                      |++.......-..+...    +.++.++.|.+
T Consensus        82 aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~  113 (135)
T PF01488_consen   82 ATPSGMPIITEEMLKKASKKLRLVIDLAVPRD  113 (135)
T ss_dssp             -SSTTSTSSTHHHHTTTCHHCSEEEES-SS-S
T ss_pred             ecCCCCcccCHHHHHHHHhhhhceeccccCCC
Confidence            99864221111223333    57888876654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.71  E-value=0.00042  Score=57.03  Aligned_cols=88  Identities=18%  Similarity=0.188  Sum_probs=67.6

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -.|++++|.  |.+|..+++.++..|++|+++.+++.+...+. ..|+..+       ++.+.++     ..|+++.+.|
T Consensus       252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-~~G~~~~-------~leell~-----~ADIVI~atG  318 (476)
T PTZ00075        252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-MEGYQVV-------TLEDVVE-----TADIFVTATG  318 (476)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-hcCceec-------cHHHHHh-----cCCEEEECCC
Confidence            579999999  99999999999999999999987776654454 4465321       2333232     3899999998


Q ss_pred             hH-HH-HHHHHhhccCcEEEEEccc
Q 043295          113 GE-ML-EAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       113 ~~-~~-~~~~~~l~~~G~~v~~g~~  135 (223)
                      .. .+ ...+..|++++.++.+|..
T Consensus       319 t~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        319 NKDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             cccccCHHHHhccCCCcEEEEcCCC
Confidence            64 34 4789999999999999865

>PRK08324 short chain dehydrogenase; Validated

Probab=97.62  E-value=0.00083  Score=58.73  Aligned_cols=102  Identities=21%  Similarity=0.232  Sum_probs=67.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC-----CeeeecCCcccHHHHHHHhC--CCCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF-----DDAFNYKEETDLKATLKRYF--PDGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~i~~~~--~~~~d  105 (223)
                      +|+++||+   |++|..+++.+...|++|+.++++.++.+.+.+.++.     ....|-.+.+...+.+.+..  .+++|
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iD  500 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVD  500 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            56899999   8999999999999999999999998887766534543     11134333312333333322  13799


Q ss_pred             EEEcCCCh--------------------------HHHHHHHHhhcc---CcEEEEEccccc
Q 043295          106 VYFDNVGG--------------------------EMLEAAVANMNL---FGRVAACGVISE  137 (223)
Q Consensus       106 ~vid~~g~--------------------------~~~~~~~~~l~~---~G~~v~~g~~~~  137 (223)
                      ++|++.|.                          ..++.+++.++.   +|+++.++....
T Consensus       501 vvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~  561 (681)
T PRK08324        501 IVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNA  561 (681)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Confidence            99999982                          012334555555   589999887544

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.60  E-value=0.0016  Score=51.43  Aligned_cols=92  Identities=22%  Similarity=0.203  Sum_probs=64.3

Q ss_pred             hhhccccchhhHHHHHHHHh-----hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeec
Q 043295           15 FANGAGTSGFTAYVGFYEIS-----QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNY   86 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~-----~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~   86 (223)
                      +.+....+..+++.++....     .++.+|+|.  |.+|..+++.++..|+ +|+.+.+++++...+.+++|.. +++.
T Consensus       151 et~i~~~~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~-~~~~  229 (311)
T cd05213         151 ETGISRGAVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGN-AVPL  229 (311)
T ss_pred             hcCCCCCCcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCe-EEeH
Confidence            34444556777888876655     268999999  9999999999988776 7888898888764444378873 3332


Q ss_pred             CCcccHHHHHHHhCCCCccEEEcCCChHH
Q 043295           87 KEETDLKATLKRYFPDGIDVYFDNVGGEM  115 (223)
Q Consensus        87 ~~~~~~~~~i~~~~~~~~d~vid~~g~~~  115 (223)
                      .   ++.+.+.     ..|+||.|++.+.
T Consensus       230 ~---~~~~~l~-----~aDvVi~at~~~~  250 (311)
T cd05213         230 D---ELLELLN-----EADVVISATGAPH  250 (311)
T ss_pred             H---HHHHHHh-----cCCEEEECCCCCc
Confidence            1   2333332     3899999999753

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.60  E-value=0.00076  Score=50.82  Aligned_cols=102  Identities=19%  Similarity=0.217  Sum_probs=65.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC---Ceee--ecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF---DDAF--NYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~---~~~~--~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      ++++++|+   |++|..+++.+...|++|+.+++++++.+.+.+.+..   -..+  |..+.+...+.+.+...  +++|
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   83 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID   83 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            46799999   8999999999999999999999998877666323321   1222  22332123222222211  3589


Q ss_pred             EEEcCCChH------------------------HHHHHHHhhccCcEEEEEccccc
Q 043295          106 VYFDNVGGE------------------------MLEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       106 ~vid~~g~~------------------------~~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      .++.+.|..                        .++..+..++++|+++.++....
T Consensus        84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~  139 (238)
T PRK05786         84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSG  139 (238)
T ss_pred             EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence            998888631                        13344456667889998886543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.60  E-value=0.0017  Score=50.62  Aligned_cols=107  Identities=16%  Similarity=0.175  Sum_probs=74.9

Q ss_pred             cchhhHHHHHHHHh------hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           21 TSGFTAYVGFYEIS------QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        21 ~~~~ta~~~l~~~~------~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      .+..||..++....      -.+++++|.  |.+|.++++.++..|++|++..+++++.+.+. +.|... +++  . ++
T Consensus       129 n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-~~g~~~-~~~--~-~l  203 (287)
T TIGR02853       129 NSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-EMGLIP-FPL--N-KL  203 (287)
T ss_pred             ccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCee-ecH--H-HH
Confidence            34556666654332      357899999  99999999999999999999999988777666 666432 211  1 22


Q ss_pred             HHHHHHhCCCCccEEEcCCChHH-HHHHHHhhccCcEEEEEccccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEM-LEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      .+.+.     ..|+|++|+.... -...+..++++..++.++..++
T Consensus       204 ~~~l~-----~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg  244 (287)
T TIGR02853       204 EEKVA-----EIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPG  244 (287)
T ss_pred             HHHhc-----cCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCC
Confidence            22222     4999999987543 2346678888888998886543

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.57  E-value=0.0013  Score=53.34  Aligned_cols=108  Identities=16%  Similarity=0.110  Sum_probs=71.6

Q ss_pred             cccchhhHHHHHHHHh--hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHH
Q 043295           19 AGTSGFTAYVGFYEIS--QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKAT   95 (223)
Q Consensus        19 l~~~~~ta~~~l~~~~--~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   95 (223)
                      +..+....+..+.+..  +++++||-. .|.|..+..+++..|++|++++.+++..+.+++.. ....+..... ++.  
T Consensus       148 L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~-~~l~v~~~~~-D~~--  223 (383)
T PRK11705        148 LEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC-AGLPVEIRLQ-DYR--  223 (383)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-ccCeEEEEEC-chh--
Confidence            3333344444443333  789999999 88999999999988999999999999999888333 2111211111 222  


Q ss_pred             HHHhCCCCccEEEc-----CCCh----HHHHHHHHhhccCcEEEEEc
Q 043295           96 LKRYFPDGIDVYFD-----NVGG----EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus        96 i~~~~~~~~d~vid-----~~g~----~~~~~~~~~l~~~G~~v~~g  133 (223)
                        .. .+.+|.|+.     .+|.    ..+..+.+.|+|+|.++...
T Consensus       224 --~l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        224 --DL-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             --hc-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence              11 246898863     3443    35778888999999998754

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.57  E-value=0.0043  Score=43.62  Aligned_cols=109  Identities=16%  Similarity=0.174  Sum_probs=69.7

Q ss_pred             HHHHHHHHh---hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhC
Q 043295           26 AYVGFYEIS---QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYF  100 (223)
Q Consensus        26 a~~~l~~~~---~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~  100 (223)
                      .+.++.+..   -.|++++|.  |-+|.-.++.++.+|++|+++...+-+.-.+. .-|.. +.      ...+.+.   
T Consensus         9 ~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-~dGf~-v~------~~~~a~~---   77 (162)
T PF00670_consen    9 LVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-MDGFE-VM------TLEEALR---   77 (162)
T ss_dssp             HHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-HTT-E-EE-------HHHHTT---
T ss_pred             HHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-hcCcE-ec------CHHHHHh---
Confidence            344444443   689999999  99999999999999999999999887765555 44543 21      2333322   


Q ss_pred             CCCccEEEcCCChHH--HHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhh
Q 043295          101 PDGIDVYFDNVGGEM--LEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYK  155 (223)
Q Consensus       101 ~~~~d~vid~~g~~~--~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  155 (223)
                        ..|+++.++|...  -..-+..|+++..+..+|...        ..++...+...
T Consensus        78 --~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d--------~Eid~~~L~~~  124 (162)
T PF00670_consen   78 --DADIFVTATGNKDVITGEHFRQMKDGAILANAGHFD--------VEIDVDALEAN  124 (162)
T ss_dssp             --T-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSST--------TSBTHHHHHTC
T ss_pred             --hCCEEEECCCCccccCHHHHHHhcCCeEEeccCcCc--------eeEeecccccc
Confidence              3899999999743  356788888888887777432        24555555444

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.50  E-value=0.00014  Score=62.18  Aligned_cols=106  Identities=15%  Similarity=0.179  Sum_probs=69.0

Q ss_pred             hhhHHHHHHHH---------------h-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecC-----------------
Q 043295           23 GFTAYVGFYEI---------------S-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGT-----------------   67 (223)
Q Consensus        23 ~~ta~~~l~~~---------------~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~-----------------   67 (223)
                      ..++.+++.+.               . .+|++|+|.  |+.|+.+++.++..|++|+++...                 
T Consensus       107 ~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~  186 (564)
T PRK12771        107 DAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLP  186 (564)
T ss_pred             CCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCC
Confidence            35666777664               1 568999999  999999999999999999888742                 


Q ss_pred             ----HHHHHHHHHhhCCCeeeecCCcccH-HHHHHHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEc
Q 043295           68 ----NEKVAILKEKLGFDDAFNYKEETDL-KATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACG  133 (223)
Q Consensus        68 ----~~~~~~~~~~~g~~~~~~~~~~~~~-~~~i~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g  133 (223)
                          +.+++.++ ++|++..++.....+. .+.+    ..++|+||+++|.. .....+.....+|.+..++
T Consensus       187 ~~~~~~~l~~~~-~~Gv~~~~~~~~~~~~~~~~~----~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~  253 (564)
T PRK12771        187 REVLDAEIQRIL-DLGVEVRLGVRVGEDITLEQL----EGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVD  253 (564)
T ss_pred             HHHHHHHHHHHH-HCCCEEEeCCEECCcCCHHHH----HhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHH
Confidence                34567777 7898766654331021 1222    12699999999963 2222333334445544443

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.39  E-value=0.0071  Score=44.42  Aligned_cols=94  Identities=18%  Similarity=0.249  Sum_probs=64.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHH---hhCC-CeeeecCCcccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKE---KLGF-DDAFNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~---~~g~-~~~~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      .++++|+-. .+.|..++++++..+  .+|++++.+++..+.+++   .+|. +.+.....  +..+.+.. ..+.+|.|
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~--d~~~~l~~-~~~~~D~V  115 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKG--EAPEILFT-INEKFDRI  115 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEe--chhhhHhh-cCCCCCEE
Confidence            788999999 666999999998764  589999999988776652   3552 33322111  22222222 22369999


Q ss_pred             EcCCCh----HHHHHHHHhhccCcEEEE
Q 043295          108 FDNVGG----EMLEAAVANMNLFGRVAA  131 (223)
Q Consensus       108 id~~g~----~~~~~~~~~l~~~G~~v~  131 (223)
                      |...+.    ..+..+.+.|+++|+++.
T Consensus       116 ~~~~~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        116 FIGGGSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             EECCCcccHHHHHHHHHHHcCCCcEEEE
Confidence            975542    357788889999999985

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.37  E-value=0.0014  Score=47.52  Aligned_cols=76  Identities=18%  Similarity=0.297  Sum_probs=53.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC--CeeeecCCccc---HHHHHHHhCCCCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF--DDAFNYKEETD---LKATLKRYFPDGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~---~~~~i~~~~~~~~d~v  107 (223)
                      .|.+|||.   +|+|+..++-....|=+|+.+.|++++++.++.....  ..+.|-.+.++   +.+.+.+..+ ..+++
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P-~lNvl   82 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYP-NLNVL   82 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCC-chhee
Confidence            47899999   6889998888888999999999999999999833322  34445544412   3344433322 57888


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        83 iNNAG   87 (245)
T COG3967          83 INNAG   87 (245)
T ss_pred             eeccc
Confidence            88776

>PRK12742 oxidoreductase; Provisional

Probab=97.35  E-value=0.004  Score=46.85  Aligned_cols=100  Identities=17%  Similarity=0.218  Sum_probs=61.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEec-CHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-TNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      +++++||+   |++|..+++.....|++|+.+.+ ++++.+.+.++++...+ .|..+...+.+.+.+.  +++|+++++
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~--~~id~li~~   82 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKS--GALDILVVN   82 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHh--CCCcEEEEC
Confidence            46789999   89999999998889999988764 44555554435565322 3333321233333221  369999998


Q ss_pred             CChH-----------HH---------------HHHHHhhccCcEEEEEccccc
Q 043295          111 VGGE-----------ML---------------EAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       111 ~g~~-----------~~---------------~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      .|..           .+               ..+...++.+|+++.++....
T Consensus        83 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~  135 (237)
T PRK12742         83 AGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNG  135 (237)
T ss_pred             CCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            8631           01               123344556789998876543

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.35  E-value=0.0012  Score=50.90  Aligned_cols=93  Identities=20%  Similarity=0.305  Sum_probs=58.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEE--
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYF--  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi--  108 (223)
                      ++|++||-. +|.|..+..+|+..|++|+++..|++..+.+++   +.|...-+..... ++    ++.. +.||.|+  
T Consensus        61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~-D~----~~~~-~~fD~IvSi  134 (273)
T PF02353_consen   61 KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQ-DY----RDLP-GKFDRIVSI  134 (273)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES--G----GG----S-SEEEEE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEe-ec----cccC-CCCCEEEEE
Confidence            999999999 889999999999999999999999998887763   3344211111111 11    1111 1588763  


Q ss_pred             ---cCCCh----HHHHHHHHhhccCcEEEEEc
Q 043295          109 ---DNVGG----EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       109 ---d~~g~----~~~~~~~~~l~~~G~~v~~g  133 (223)
                         +.+|.    ..+..+.+.|+|||+++.-.
T Consensus       135 ~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  135 EMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             SEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             echhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence               56663    35778889999999987543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.35  E-value=0.0076  Score=43.26  Aligned_cols=96  Identities=23%  Similarity=0.352  Sum_probs=65.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      ++++.++=. .+.|...+++++.. ..+||++.++++..+..++   .||.+.+.--..  +-.+.+.+..  .+|.+|-
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g--~Ap~~L~~~~--~~daiFI  108 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG--DAPEALPDLP--SPDAIFI  108 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEec--cchHhhcCCC--CCCEEEE
Confidence            788865555 78899999999554 3499999999887766542   578765432221  1222222221  4888875


Q ss_pred             CCCh---HHHHHHHHhhccCcEEEEEcc
Q 043295          110 NVGG---EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       110 ~~g~---~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      --|+   ..++.+|..|+++|++|.-..
T Consensus       109 GGg~~i~~ile~~~~~l~~ggrlV~nai  136 (187)
T COG2242         109 GGGGNIEEILEAAWERLKPGGRLVANAI  136 (187)
T ss_pred             CCCCCHHHHHHHHHHHcCcCCeEEEEee
Confidence            4443   368899999999999997654

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.32  E-value=0.0017  Score=49.60  Aligned_cols=77  Identities=18%  Similarity=0.269  Sum_probs=56.8

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-----ee--eecCCcccHHHHHHHh-CC-C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-----DA--FNYKEETDLKATLKRY-FP-D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-----~~--~~~~~~~~~~~~i~~~-~~-~  102 (223)
                      ..+.+++|+   +++|...+......|++|+.++|+.++++.+.+++.-.     .+  +|..+. +-.+.+.+. .. +
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~-~~~~~l~~~l~~~~   82 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDP-EALERLEDELKERG   82 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCCh-hHHHHHHHHHHhcC
Confidence            356899999   89999999999999999999999999998777555421     12  455555 444444432 22 2


Q ss_pred             -CccEEEcCCC
Q 043295          103 -GIDVYFDNVG  112 (223)
Q Consensus       103 -~~d~vid~~g  112 (223)
                       .+|+.+++.|
T Consensus        83 ~~IdvLVNNAG   93 (265)
T COG0300          83 GPIDVLVNNAG   93 (265)
T ss_pred             CcccEEEECCC
Confidence             7999999998

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.31  E-value=0.0014  Score=51.21  Aligned_cols=95  Identities=20%  Similarity=0.123  Sum_probs=62.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .++++||-. +|.|..++.+++ .|+ +|++++.++...+.+++..   +....+..... +    ......++||+|+.
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~-~----~~~~~~~~fDlVva  231 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI-Y----LEQPIEGKADVIVA  231 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec-c----cccccCCCceEEEE
Confidence            678898888 777988877766 465 8999999988877776322   22111111111 1    11122347999987


Q ss_pred             CCChH----HHHHHHHhhccCcEEEEEccc
Q 043295          110 NVGGE----MLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       110 ~~g~~----~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .....    .+....++|+++|.++..|..
T Consensus       232 n~~~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       232 NILAEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             ecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            65543    456677899999999988754

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.28  E-value=0.0026  Score=52.42  Aligned_cols=89  Identities=22%  Similarity=0.251  Sum_probs=63.1

Q ss_pred             hccccchhhHHHHHHHHh-----hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           17 NGAGTSGFTAYVGFYEIS-----QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        17 a~l~~~~~ta~~~l~~~~-----~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +....+..+++.++....     .++++|+|.  |.+|..+++.++..|+ +|+.+.++.++.+.+.+++|.+ +++.. 
T Consensus       157 ~i~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~~-  234 (423)
T PRK00045        157 GIGAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGE-AIPLD-  234 (423)
T ss_pred             CCCCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-EeeHH-
Confidence            334446677788876554     467899999  9999999999999998 8999999988866444377753 33321 


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCChH
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGGE  114 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~~  114 (223)
                        ++.+.+.     ++|+||+|+|++
T Consensus       235 --~~~~~l~-----~aDvVI~aT~s~  253 (423)
T PRK00045        235 --ELPEALA-----EADIVISSTGAP  253 (423)
T ss_pred             --HHHHHhc-----cCCEEEECCCCC
Confidence              2222221     489999999863

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.0043  Score=45.42  Aligned_cols=98  Identities=18%  Similarity=0.190  Sum_probs=68.6

Q ss_pred             HHHHHh-hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHH----HHHhhCCCeee-ecCCcccHHHHHHHhCC
Q 043295           29 GFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAI----LKEKLGFDDAF-NYKEETDLKATLKRYFP  101 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~----~~~~~g~~~~~-~~~~~~~~~~~i~~~~~  101 (223)
                      ++.... +++++||-. ++.|-.++-+++..| +|+.+.+.++=.+.    ++ .+|...+. ...+.  .    .-..+
T Consensus        64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~-~lg~~nV~v~~gDG--~----~G~~~  135 (209)
T COG2518          64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLE-TLGYENVTVRHGDG--S----KGWPE  135 (209)
T ss_pred             HHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHH-HcCCCceEEEECCc--c----cCCCC
Confidence            344444 999999999 899999999999999 99999987763333    44 67775442 22221  1    11222


Q ss_pred             C-CccEEEcCCChH-HHHHHHHhhccCcEEEEEcc
Q 043295          102 D-GIDVYFDNVGGE-MLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       102 ~-~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~  134 (223)
                      . .||.|+=+.+.+ .-+..++.|++||+++..-.
T Consensus       136 ~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         136 EAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence            3 799998777654 44677899999999987543

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0026  Score=49.11  Aligned_cols=74  Identities=23%  Similarity=0.364  Sum_probs=52.3

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCC--CCccEEEcCC
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFP--DGIDVYFDNV  111 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~--~~~d~vid~~  111 (223)
                      ++++|+   |++|...++.+...|++|++++++.++.+.+. ..+...+ .|..+.+++.+.+.....  +++|+++++.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a   80 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA-AAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA   80 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            468888   89999999988889999999999988777666 4554333 455543233333333322  3699999998


Q ss_pred             C
Q 043295          112 G  112 (223)
Q Consensus       112 g  112 (223)
                      |
T Consensus        81 g   81 (274)
T PRK05693         81 G   81 (274)
T ss_pred             C
Confidence            7

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.007  Score=46.39  Aligned_cols=77  Identities=13%  Similarity=0.154  Sum_probs=51.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe-e--eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD-A--FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~-~--~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .+++++|.   |++|...++.....|++|+.++++.++.+.+.++++... .  .|..+.+++.+.+.+...  +.+|++
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l   84 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDIL   84 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            46789999   899999998888899999999998877666654555321 1  243333233333333221  268999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +.+.|
T Consensus        85 v~~ag   89 (261)
T PRK08265         85 VNLAC   89 (261)
T ss_pred             EECCC
Confidence            98876

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0041  Score=48.12  Aligned_cols=76  Identities=18%  Similarity=0.327  Sum_probs=53.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHH---HhCCCCccEEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLK---RYFPDGIDVYF  108 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~---~~~~~~~d~vi  108 (223)
                      .+++++|+   |++|...++.....|++|+++++++++.+.+. ..+...+ .|..+.+++...+.   +..++.+|+++
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li   81 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE-AEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF   81 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence            35788999   89999999888888999999999988887776 5555333 35444312222222   33345799999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        82 ~~Ag   85 (277)
T PRK05993         82 NNGA   85 (277)
T ss_pred             ECCC
Confidence            9876

>PRK06182 short chain dehydrogenase; Validated

Probab=97.14  E-value=0.0036  Score=48.27  Aligned_cols=76  Identities=24%  Similarity=0.373  Sum_probs=53.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhC--CCCccEEEc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYF--PDGIDVYFD  109 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~--~~~~d~vid  109 (223)
                      ++++++|+   |++|...++.+...|++|+++++++++.+.+. ..+...+ .|..+.+++...+.+..  .+++|++++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~   80 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA-SLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN   80 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            46788999   89999999988889999999999988876665 4444322 35444423333333332  237999999


Q ss_pred             CCC
Q 043295          110 NVG  112 (223)
Q Consensus       110 ~~g  112 (223)
                      +.|
T Consensus        81 ~ag   83 (273)
T PRK06182         81 NAG   83 (273)
T ss_pred             CCC
Confidence            887

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0035  Score=49.09  Aligned_cols=78  Identities=22%  Similarity=0.257  Sum_probs=53.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-ee----eecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DA----FNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~----~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      ++++++|+   |++|..+++.....|++|+.++++.++.+.+.++++.. .+    .|-.+.++....+.+...  +++|
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id   87 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGID   87 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            57899999   89999999999999999999999988877665466531 11    344433123233333222  3699


Q ss_pred             EEEcCCCh
Q 043295          106 VYFDNVGG  113 (223)
Q Consensus       106 ~vid~~g~  113 (223)
                      +++++.|.
T Consensus        88 ~vI~nAG~   95 (296)
T PRK05872         88 VVVANAGI   95 (296)
T ss_pred             EEEECCCc
Confidence            99998873

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.13  E-value=0.004  Score=44.94  Aligned_cols=87  Identities=18%  Similarity=0.180  Sum_probs=61.1

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -.|++|.|+  |.+|...++.++.+|++|++.+++........ ..+.    .+.   ++.+.+.+     .|+|+.+..
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-~~~~----~~~---~l~ell~~-----aDiv~~~~p  100 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-EFGV----EYV---SLDELLAQ-----ADIVSLHLP  100 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-HTTE----EES---SHHHHHHH------SEEEE-SS
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-cccc----eee---ehhhhcch-----hhhhhhhhc
Confidence            468999999  99999999999999999999999887655344 4443    111   34444443     788887765


Q ss_pred             h-H-----HHHHHHHhhccCcEEEEEcc
Q 043295          113 G-E-----MLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 ~-~-----~~~~~~~~l~~~G~~v~~g~  134 (223)
                      . +     .-...+..|+++..+|-++-
T Consensus       101 lt~~T~~li~~~~l~~mk~ga~lvN~aR  128 (178)
T PF02826_consen  101 LTPETRGLINAEFLAKMKPGAVLVNVAR  128 (178)
T ss_dssp             SSTTTTTSBSHHHHHTSTTTEEEEESSS
T ss_pred             cccccceeeeeeeeeccccceEEEeccc
Confidence            2 2     12467788898888887763

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.08  E-value=0.0068  Score=46.92  Aligned_cols=101  Identities=15%  Similarity=0.133  Sum_probs=72.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC--
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV--  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~--  111 (223)
                      .+++.++|- |.+|.-++.+|..+|++|...+.|.+|+..+...++-..-.-+.....+.+.+.+     .|++|.++  
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~-----aDlvIgaVLI  241 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKK-----ADLVIGAVLI  241 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhh-----ccEEEEEEEe
Confidence            334444444 8999999999999999999999999999999866665422223332245555443     89998876  


Q ss_pred             -ChH----HHHHHHHhhccCcEEEEEcccccccc
Q 043295          112 -GGE----MLEAAVANMNLFGRVAACGVISECAD  140 (223)
Q Consensus       112 -g~~----~~~~~~~~l~~~G~~v~~g~~~~~~~  140 (223)
                       |..    ..++....|++|+.++.+....+...
T Consensus       242 pgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~  275 (371)
T COG0686         242 PGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCF  275 (371)
T ss_pred             cCCCCceehhHHHHHhcCCCcEEEEEEEcCCCce
Confidence             221    46778899999999999887665443

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.00  E-value=0.028  Score=40.91  Aligned_cols=93  Identities=17%  Similarity=0.143  Sum_probs=61.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-C-CeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCC-CccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-G-CYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPD-GIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g-~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~-~~d~vid  109 (223)
                      +++++||.. .|.|..+..+++.. + .+|++++.++..    . ..++..+ .|..+. ...+.+++..++ ++|+|+.
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~-~~~i~~~~~d~~~~-~~~~~l~~~~~~~~~D~V~~  104 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P-IENVDFIRGDFTDE-EVLNKIRERVGDDKVDVVMS  104 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c-CCCceEEEeeCCCh-hHHHHHHHHhCCCCccEEEc
Confidence            889999999 77788777777765 3 489999988743    2 2233322 233333 344555555555 8999994


Q ss_pred             -CC----C-------------hHHHHHHHHhhccCcEEEEEc
Q 043295          110 -NV----G-------------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       110 -~~----g-------------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                       ..    |             ...+..+.++|+++|+++...
T Consensus       105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438       105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence             21    2             134667788999999998864

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.99  E-value=0.017  Score=48.04  Aligned_cols=77  Identities=18%  Similarity=0.267  Sum_probs=49.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH--HHHHHHHHhhCCCe-eeecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN--EKVAILKEKLGFDD-AFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~--~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      ++++++|+   |++|...++.....|++|+.++++.  ++.+.+.++++... ..|..+.+.....+.....  +++|++
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~v  288 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDIV  288 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            46889999   8999999999889999999988643  33343433555432 2354443122222222221  269999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      |++.|
T Consensus       289 i~~AG  293 (450)
T PRK08261        289 VHNAG  293 (450)
T ss_pred             EECCC
Confidence            99987

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.99  E-value=0.019  Score=45.50  Aligned_cols=94  Identities=23%  Similarity=0.235  Sum_probs=65.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      +++++||.. +|.|..++.+++..+.  +|++++.+++..+.+++   .+|.+.+.....  +..+....  .+.+|+|+
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g--D~~~~~~~--~~~fD~Ii  154 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG--DGYYGVPE--FAPYDVIF  154 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC--Chhhcccc--cCCccEEE
Confidence            788999999 7789999999998864  79999999887666553   356554432221  22222111  12699999


Q ss_pred             cCCChH-HHHHHHHhhccCcEEEEE
Q 043295          109 DNVGGE-MLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       109 d~~g~~-~~~~~~~~l~~~G~~v~~  132 (223)
                      .+.+-. .....++.|+++|+++..
T Consensus       155 ~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        155 VTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             ECCchHHhHHHHHHhcCCCCEEEEE
Confidence            887753 455678899999998763

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.0062  Score=48.50  Aligned_cols=76  Identities=22%  Similarity=0.347  Sum_probs=51.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCe---eeecCCcccHH---HHHHHhCCCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDD---AFNYKEETDLK---ATLKRYFPDG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~---~~~~~~~~~~~---~~i~~~~~~~  103 (223)
                      ++++++|+   |++|.+.++.+...|++|+.+++++++++.+.+   +.|.+.   ..|-.+.++..   +.+.+.. ++
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~   84 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFG-GR   84 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhc-CC
Confidence            46789999   899999999999999999999999887765442   335432   13444331222   2222222 46


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|++|++.|
T Consensus        85 iD~lVnnAG   93 (330)
T PRK06139         85 IDVWVNNVG   93 (330)
T ss_pred             CCEEEECCC
Confidence            999999987

>PRK04148 hypothetical protein; Provisional

Probab=96.96  E-value=0.0064  Score=41.41  Aligned_cols=74  Identities=16%  Similarity=0.104  Sum_probs=47.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .++.++++. -|.|...++.....|.+|++++.+++..+.++ +.+...+.+.--..++  .+.    +++|+++..-..
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~-~~~~~~v~dDlf~p~~--~~y----~~a~liysirpp   87 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAK-KLGLNAFVDDLFNPNL--EIY----KNAKLIYSIRPP   87 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHH-HhCCeEEECcCCCCCH--HHH----hcCCEEEEeCCC
Confidence            456788888 33887556566678999999999999999888 7776444321110011  111    147888877765


Q ss_pred             HH
Q 043295          114 EM  115 (223)
Q Consensus       114 ~~  115 (223)
                      .-
T Consensus        88 ~e   89 (134)
T PRK04148         88 RD   89 (134)
T ss_pred             HH
Confidence            43

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.94  E-value=0.0076  Score=44.15  Aligned_cols=103  Identities=17%  Similarity=0.292  Sum_probs=71.2

Q ss_pred             CCCEEEEE----CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC-CeeeecCCccc---HHHHHHHhCCCCccEE
Q 043295           36 KGEKVFVS----GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF-DDAFNYKEETD---LKATLKRYFPDGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~----g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~---~~~~i~~~~~~~~d~v  107 (223)
                      ..+.|||.    |++|.+++.-...-|+.|++++++-+..+.+.-++|. .+-+|-.++++   ....+++.+.|..|+.
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L   85 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL   85 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence            45678898    9999999888888999999999998887766546675 33345444312   3445666666789999


Q ss_pred             EcCCChH-----------HHHHH----------------HHhhccCcEEEEEcccccc
Q 043295          108 FDNVGGE-----------MLEAA----------------VANMNLFGRVAACGVISEC  138 (223)
Q Consensus       108 id~~g~~-----------~~~~~----------------~~~l~~~G~~v~~g~~~~~  138 (223)
                      ++..|-+           ..+.+                .-+.+..|++|.+|...+.
T Consensus        86 ~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~  143 (289)
T KOG1209|consen   86 YNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGV  143 (289)
T ss_pred             EcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEE
Confidence            9866632           11111                2355778999998876543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.94  E-value=0.0096  Score=44.28  Aligned_cols=100  Identities=14%  Similarity=0.075  Sum_probs=63.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeee---------cCCcccHHHHHHHhC---C
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFN---------YKEETDLKATLKRYF---P  101 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~---------~~~~~~~~~~i~~~~---~  101 (223)
                      .++.+||+. .|.|.-++-+|. .|.+|++++.|+.-.+.+.++.+......         ..+-+-....+.+..   .
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~-~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~  111 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAE-QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL  111 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence            577899999 899999999985 69999999999998877543444321100         000000000111111   1


Q ss_pred             CCccEEEcCCC---------hHHHHHHHHhhccCcEEEEEccc
Q 043295          102 DGIDVYFDNVG---------GEMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       102 ~~~d~vid~~g---------~~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      +.+|.|+|+..         ...+....++|+|||+++..+..
T Consensus       112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            25899999653         13577888999999987766543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.93  E-value=0.0068  Score=46.44  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=51.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-ee--eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DA--FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~--~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      ++++++|+   +++|...++.+...|++|+.+++++++.+.+.++++.. ..  .|-.+.++....+.+...  +.+|++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   84 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCF   84 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            46789999   79999999888889999999999988877766444431 11  233332123333333222  368999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        85 i~~ag   89 (263)
T PRK06200         85 VGNAG   89 (263)
T ss_pred             EECCC
Confidence            98887

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.011  Score=44.54  Aligned_cols=75  Identities=16%  Similarity=0.218  Sum_probs=51.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      ++++++|+   |++|...++.+...|++|+.++++.++.+.+.+..+...+ .|..+. +......+. .+++|++|++.
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~-~~~~d~vi~~a   85 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDD-AAIRAALAA-AGAFDGLVNCA   85 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCH-HHHHHHHHH-hCCCCEEEECC
Confidence            56789999   7999999999999999999999988777666534454322 344433 222222222 13689999988


Q ss_pred             C
Q 043295          112 G  112 (223)
Q Consensus       112 g  112 (223)
                      |
T Consensus        86 g   86 (245)
T PRK07060         86 G   86 (245)
T ss_pred             C
Confidence            7

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0074  Score=46.00  Aligned_cols=77  Identities=17%  Similarity=0.194  Sum_probs=51.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe-eeecCCcccHHHHHHHhCC--CCccEEEc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD-AFNYKEETDLKATLKRYFP--DGIDVYFD  109 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~--~~~d~vid  109 (223)
                      ++++++|.   |++|...++.....|++|+.+++++.+.+...++++... ..|..+.+...+.+.+...  +++|+++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   85 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAFN   85 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            47899999   899999999988899999999998877665543554422 2344443122222222211  26899998


Q ss_pred             CCC
Q 043295          110 NVG  112 (223)
Q Consensus       110 ~~g  112 (223)
                      +.|
T Consensus        86 ~ag   88 (255)
T PRK06057         86 NAG   88 (255)
T ss_pred             CCC
Confidence            876

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.018  Score=45.98  Aligned_cols=77  Identities=18%  Similarity=0.177  Sum_probs=50.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCee---eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDA---FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      ++++++|+   |++|..+++.+...|++|+.+++++++.+.+.++   .|....   .|..+.++..+.+.....  +++
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~i   86 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPI   86 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence            46789999   8999999998888999999999998776554422   343221   344443122222222211  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        87 D~lInnAg   94 (334)
T PRK07109         87 DTWVNNAM   94 (334)
T ss_pred             CEEEECCC
Confidence            99999887

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=96.93  E-value=0.0048  Score=47.44  Aligned_cols=92  Identities=21%  Similarity=0.327  Sum_probs=68.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCC-ee----eecCCcccHHHHHHHhCCCCcc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFD-DA----FNYKEETDLKATLKRYFPDGID  105 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~-~~----~~~~~~~~~~~~i~~~~~~~~d  105 (223)
                      +||++||=. .|-|.+++-.|+..|++|+++.-|+++.+.+++   +.|.. .+    -|+++   +       . +.||
T Consensus        71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd---~-------~-e~fD  139 (283)
T COG2230          71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD---F-------E-EPFD  139 (283)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc---c-------c-cccc
Confidence            999999999 899999999999999999999999998877763   23443 11    12222   1       1 1366


Q ss_pred             EE-----EcCCCh----HHHHHHHHhhccCcEEEEEccccc
Q 043295          106 VY-----FDNVGG----EMLEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       106 ~v-----id~~g~----~~~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      -|     |+.+|.    +.+..+.++|+++|+++.-.....
T Consensus       140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~  180 (283)
T COG2230         140 RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP  180 (283)
T ss_pred             eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence            55     456664    357788899999999988776554

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=96.90  E-value=0.047  Score=40.58  Aligned_cols=97  Identities=22%  Similarity=0.164  Sum_probs=69.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHH---hhCCCe-eeecCCcccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKE---KLGFDD-AFNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~---~~g~~~-~~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      .+.++||=. +..|..++.+|..+.  .+++++..++++.+.+++   +.|.+. +.-.... +..+.+.+...+.||.|
T Consensus        58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g-dal~~l~~~~~~~fDli  136 (219)
T COG4122          58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG-DALDVLSRLLDGSFDLV  136 (219)
T ss_pred             cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC-cHHHHHHhccCCCccEE
Confidence            677888888 899999999999886  489999999998877764   346544 2211212 45555555334589999


Q ss_pred             E-cCCCh---HHHHHHHHhhccCcEEEEE
Q 043295          108 F-DNVGG---EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       108 i-d~~g~---~~~~~~~~~l~~~G~~v~~  132 (223)
                      | |+--+   ..++.++++|++||.++.=
T Consensus       137 FIDadK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         137 FIDADKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             EEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            6 44433   3688999999999998753

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=96.90  E-value=0.021  Score=42.12  Aligned_cols=97  Identities=22%  Similarity=0.160  Sum_probs=67.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCC----CCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFP----DGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~----~~~  104 (223)
                      ...++||-. +..|..++.+|+.+  +.+|+++..+++..+.+++   ..|...-+..... +..+.+.++..    +.|
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g-da~~~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG-DALEVLPELANDGEEGQF  122 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES--HHHHHHHHHHTTTTTSE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe-ccHhhHHHHHhccCCCce
Confidence            677899999 89999999999976  5699999999988777763   3455333333322 34444444322    369


Q ss_pred             cEEE-cCCCh---HHHHHHHHhhccCcEEEEE
Q 043295          105 DVYF-DNVGG---EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       105 d~vi-d~~g~---~~~~~~~~~l~~~G~~v~~  132 (223)
                      |+|| |+--+   .++..++++|++||.++.=
T Consensus       123 D~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  123 DFVFIDADKRNYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             EEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence            9985 55543   3678889999999998864

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.82  E-value=0.0091  Score=45.76  Aligned_cols=77  Identities=22%  Similarity=0.226  Sum_probs=51.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-e--eeecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-D--AFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~--~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      ++++++|.   |++|...++.....|++|+.++++.++.+.+.+..+.. .  ..|..+.++..+.+.+...  +.+|++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   83 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCL   83 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence            46789999   79999999888889999999999887777666333321 1  1233332123333333322  368999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +.+.|
T Consensus        84 i~~Ag   88 (262)
T TIGR03325        84 IPNAG   88 (262)
T ss_pred             EECCC
Confidence            99876

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.79  E-value=0.037  Score=42.24  Aligned_cols=88  Identities=20%  Similarity=0.200  Sum_probs=60.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhCCC-CccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYFPD-GIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~~-~~d~vi  108 (223)
                      .++++||-. .|.|..++.+++ .|+ +|++++.++...+.+++..   +....+....            +. .+|+|+
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~------------~~~~fD~Vv  184 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ------------GDLKADVIV  184 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc------------CCCCcCEEE
Confidence            678899888 667988876554 566 6999999998888777322   2211011000            11 499998


Q ss_pred             cCCChH----HHHHHHHhhccCcEEEEEccc
Q 043295          109 DNVGGE----MLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       109 d~~g~~----~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .....+    .+....+.|+++|.++..|..
T Consensus       185 ani~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        185 ANILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             EcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence            766543    456778899999999988754

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.011  Score=45.13  Aligned_cols=79  Identities=16%  Similarity=0.227  Sum_probs=51.5

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC----eeeecCCcccHHHHHHHhCC--CCcc
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD----DAFNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      -++.++||.   |++|..+++.+...|++|+.++++++..+.+.+..+-.    ...|..+...+.+.+.+..+  +++|
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   88 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLD   88 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            567899999   89999999888889999999999877666555233221    12343333122222222211  2699


Q ss_pred             EEEcCCCh
Q 043295          106 VYFDNVGG  113 (223)
Q Consensus       106 ~vid~~g~  113 (223)
                      +||.+.|.
T Consensus        89 ~vi~~ag~   96 (264)
T PRK12829         89 VLVNNAGI   96 (264)
T ss_pred             EEEECCCC
Confidence            99988873

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.0079  Score=46.19  Aligned_cols=78  Identities=19%  Similarity=0.227  Sum_probs=50.3

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      -++++++|.   |++|...++.....|++|+.+++++++.+...+++   +...   ..|..+.+++...+.+...  ++
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~   86 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP   86 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            357899999   89999999888889999999998877654433222   2211   1344433233333333322  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|++|.+.|
T Consensus        87 iD~vi~~ag   95 (264)
T PRK07576         87 IDVLVSGAA   95 (264)
T ss_pred             CCEEEECCC
Confidence            899988775

>PLN02476 O-methyltransferase

Probab=96.76  E-value=0.072  Score=41.19  Aligned_cols=96  Identities=16%  Similarity=0.102  Sum_probs=66.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhC----CCCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYF----PDGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~----~~~~  104 (223)
                      .+.++||=. +++|..++.+|+.++  .+|+++..+++..+.+++   +.|...-+..... +..+.+.++.    .+.|
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~G-dA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHG-LAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHHhcccCCCC
Confidence            678888888 899999999999773  489999999988777753   3466433332222 4445554431    2379


Q ss_pred             cEEE-cCCCh---HHHHHHHHhhccCcEEEE
Q 043295          105 DVYF-DNVGG---EMLEAAVANMNLFGRVAA  131 (223)
Q Consensus       105 d~vi-d~~g~---~~~~~~~~~l~~~G~~v~  131 (223)
                      |.|| |+--.   ..++.++++|++||.++.
T Consensus       196 D~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        196 DFAFVDADKRMYQDYFELLLQLVRVGGVIVM  226 (278)
T ss_pred             CEEEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            9886 44433   367888999999999875

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.74  E-value=0.026  Score=42.73  Aligned_cols=78  Identities=18%  Similarity=0.240  Sum_probs=49.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC-e--eeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD-D--AFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~--~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      ++++++|+   |++|...+......|++|+.+++++++.+...+++   +.. .  ..|-.+.++....+.+...  +++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   85 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL   85 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            46889999   89999999888889999999998887665443232   321 1  1243333122222222111  369


Q ss_pred             cEEEcCCCh
Q 043295          105 DVYFDNVGG  113 (223)
Q Consensus       105 d~vid~~g~  113 (223)
                      |+++.+.|.
T Consensus        86 d~vi~~ag~   94 (250)
T PRK12939         86 DGLVNNAGI   94 (250)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK08017 oxidoreductase; Provisional

Probab=96.74  E-value=0.011  Score=45.06  Aligned_cols=74  Identities=18%  Similarity=0.306  Sum_probs=51.9

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccH---HHHHHHhCCCCccEEEcC
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDL---KATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~---~~~i~~~~~~~~d~vid~  110 (223)
                      ++++|+   |++|..+++.....|++|++++++.++.+.++ ..++..+ .|..+.+.+   .+.+.+..++.+|.++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~   81 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN-SLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN   81 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH-hCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            478888   89999999998888999999999998888777 6666433 344433122   233333333468888877


Q ss_pred             CC
Q 043295          111 VG  112 (223)
Q Consensus       111 ~g  112 (223)
                      .|
T Consensus        82 ag   83 (256)
T PRK08017         82 AG   83 (256)
T ss_pred             CC
Confidence            66

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.74  E-value=0.018  Score=47.43  Aligned_cols=84  Identities=23%  Similarity=0.299  Sum_probs=57.2

Q ss_pred             chhhHHHHHHHH----h-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcccHH
Q 043295           22 SGFTAYVGFYEI----S-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLK   93 (223)
Q Consensus        22 ~~~ta~~~l~~~----~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   93 (223)
                      +...++.++...    . .++++|+|.  |.+|..+++.++..|+ +|+++.++.++.+.+.+++|.. .++..   ++.
T Consensus       160 ~vSv~~~Av~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~-~i~~~---~l~  235 (417)
T TIGR01035       160 AVSISSAAVELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGE-AVKFE---DLE  235 (417)
T ss_pred             CcCHHHHHHHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCe-EeeHH---HHH
Confidence            444555554333    2 678899999  9999999999999994 8999999888755443377753 23221   233


Q ss_pred             HHHHHhCCCCccEEEcCCChH
Q 043295           94 ATLKRYFPDGIDVYFDNVGGE  114 (223)
Q Consensus        94 ~~i~~~~~~~~d~vid~~g~~  114 (223)
                      +.+.     ++|+||+|+++.
T Consensus       236 ~~l~-----~aDvVi~aT~s~  251 (417)
T TIGR01035       236 EYLA-----EADIVISSTGAP  251 (417)
T ss_pred             HHHh-----hCCEEEECCCCC
Confidence            3332     499999999863

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=96.72  E-value=0.023  Score=42.86  Aligned_cols=97  Identities=23%  Similarity=0.259  Sum_probs=69.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhC---CCeeeecCCcccHHHHHHHhCCC-CccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLG---FDDAFNYKEETDLKATLKRYFPD-GIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~i~~~~~~-~~d~vi  108 (223)
                      .+|++||=. +|.|-.+..+++..|- +|++++-|+.-++..+++..   ... +.+-.  .-++.+.  .++ .||+|.
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~--~dAe~LP--f~D~sFD~vt  124 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVV--GDAENLP--FPDNSFDAVT  124 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEE--echhhCC--CCCCccCEEE
Confidence            579999988 9999999999999975 99999999998888875432   221 11111  1222332  233 788887


Q ss_pred             cCCCh-------HHHHHHHHhhccCcEEEEEcccc
Q 043295          109 DNVGG-------EMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       109 d~~g~-------~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      -+.|-       ..+..+.+.|+|+|+++.+....
T Consensus       125 ~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         125 ISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             eeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            66652       26888999999999999887654

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.71  E-value=0.012  Score=45.32  Aligned_cols=77  Identities=18%  Similarity=0.192  Sum_probs=51.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhC-CCe-eeecCCcccHHHHHHHhCC--CCccEEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG-FDD-AFNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g-~~~-~~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      .+.+++|+   |++|...++.....|++|+.+++++++.+.+.+.++ ... ..|..+.+++.+.+.....  +++|+++
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLV   83 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            35789999   899999998888889999999999887766543554 221 2344443233332332221  3699999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      .+.|
T Consensus        84 ~~ag   87 (273)
T PRK07825         84 NNAG   87 (273)
T ss_pred             ECCC
Confidence            9887

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=96.70  E-value=0.034  Score=43.56  Aligned_cols=92  Identities=20%  Similarity=0.174  Sum_probs=58.4

Q ss_pred             CCEEEEE---CchHHHHHHHHH-Hc-CCeEEEEecCHHHHHHHHHhhCC-CeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           37 GEKVFVS---GAYGHLVGQYAK-LG-GCYVVGSAGTNEKVAILKEKLGF-DDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~-~~-g~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      ...|+|.   +=.+..++...+ .. +.++++.. |....++++ .+|. +.++.|++       |.++.....-+++|+
T Consensus       136 a~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~~N~~Fve-~lg~Yd~V~~Yd~-------i~~l~~~~~~v~VDf  206 (314)
T PF11017_consen  136 AAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SARNVAFVE-SLGCYDEVLTYDD-------IDSLDAPQPVVIVDF  206 (314)
T ss_pred             ccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cCcchhhhh-ccCCceEEeehhh-------hhhccCCCCEEEEEC
Confidence            4556666   444555555555 23 45899988 566668998 9998 88888864       233323346789999


Q ss_pred             CChH-HHHHHHHhhccCc-EEEEEccccc
Q 043295          111 VGGE-MLEAAVANMNLFG-RVAACGVISE  137 (223)
Q Consensus       111 ~g~~-~~~~~~~~l~~~G-~~v~~g~~~~  137 (223)
                      .|+. ........+...- ..+.+|....
T Consensus       207 aG~~~~~~~Lh~~l~d~l~~~~~VG~th~  235 (314)
T PF11017_consen  207 AGNGEVLAALHEHLGDNLVYSCLVGATHW  235 (314)
T ss_pred             CCCHHHHHHHHHHHhhhhhEEEEEEccCc
Confidence            9974 5556666666543 4556665443

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.012  Score=45.05  Aligned_cols=77  Identities=19%  Similarity=0.231  Sum_probs=50.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCCee----eecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFDDA----FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~~~----~~~~~~~~~~~~i~~~~~--~  102 (223)
                      .+++++|.   +++|.+.++.....|++|+.+++++++.+.+.+++    +...+    .|-.+.++..+.+.+...  +
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            46789999   79999999988889999999999887765544222    11111    244443123222333222  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        87 ~id~li~~Ag   96 (265)
T PRK07062         87 GVDMLVNNAG   96 (265)
T ss_pred             CCCEEEECCC
Confidence            6999999987

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.69  E-value=0.018  Score=45.63  Aligned_cols=77  Identities=16%  Similarity=0.219  Sum_probs=51.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCCe----eeecCCc-ccHHHHHHHhCCC-
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFDD----AFNYKEE-TDLKATLKRYFPD-  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~~----~~~~~~~-~~~~~~i~~~~~~-  102 (223)
                      .|++++|+   +++|.+.++.....|++|+.+++++++.+.+.+++    +...    ..|-.+. .+..+.+.+..++ 
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~  131 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL  131 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence            47899999   89999888877778999999999998876654333    1111    2343321 1334445555555 


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus       132 didilVnnAG  141 (320)
T PLN02780        132 DVGVLINNVG  141 (320)
T ss_pred             CccEEEEecC
Confidence            6779998876

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.013  Score=44.31  Aligned_cols=77  Identities=16%  Similarity=0.186  Sum_probs=50.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      ++++++|.   |++|...++.....|++|+.+++++++.+.+.++++....   .|..+.++....+.....  +++|++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAV   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            46789999   8999999999888999999999887776655545654321   232222122222222211  368999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +.+.|
T Consensus        85 i~~ag   89 (249)
T PRK06500         85 FINAG   89 (249)
T ss_pred             EECCC
Confidence            98886

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.65  E-value=0.053  Score=40.29  Aligned_cols=93  Identities=18%  Similarity=0.142  Sum_probs=62.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCC-CCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFP-DGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~-~~~d~v  107 (223)
                      +++++||-. ++.|..+..+++..+  .+|+++..+++-.+.+++.   +|...+- .... +...   ...+ +.||+|
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~-~~~g-d~~~---~~~~~~~fD~I  149 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVE-VIVG-DGTL---GYEENAPYDRI  149 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeE-EEEC-Cccc---CCCcCCCcCEE
Confidence            889999999 899999999998876  5999999998877766643   3443221 1111 1100   0112 379998


Q ss_pred             EcCCC-hHHHHHHHHhhccCcEEEEE
Q 043295          108 FDNVG-GEMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       108 id~~g-~~~~~~~~~~l~~~G~~v~~  132 (223)
                      +-... .......++.|++||+++..
T Consensus       150 ~~~~~~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        150 YVTAAGPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             EECCCcccchHHHHHhhCCCcEEEEE
Confidence            65433 34556778899999998875

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.65  E-value=0.017  Score=46.72  Aligned_cols=93  Identities=17%  Similarity=0.108  Sum_probs=64.8

Q ss_pred             CEEEEE--CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhC---C-CeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLG---F-DDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g---~-~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .+|||.  |+||+.+++.+.+.| .+|+..+++.++.+.+. ...   . ...+|-.+.+.+.+.|++     +|+||+|
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~-~~~~~~v~~~~vD~~d~~al~~li~~-----~d~VIn~   75 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIA-ELIGGKVEALQVDAADVDALVALIKD-----FDLVINA   75 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hhccccceeEEecccChHHHHHHHhc-----CCEEEEe
Confidence            468888  999999999988888 69999999999988887 443   2 233454443233333332     6999999


Q ss_pred             CChHHHHHHH-HhhccCcEEEEEcccc
Q 043295          111 VGGEMLEAAV-ANMNLFGRVAACGVIS  136 (223)
Q Consensus       111 ~g~~~~~~~~-~~l~~~G~~v~~g~~~  136 (223)
                      .........+ .|++.+=.++......
T Consensus        76 ~p~~~~~~i~ka~i~~gv~yvDts~~~  102 (389)
T COG1748          76 APPFVDLTILKACIKTGVDYVDTSYYE  102 (389)
T ss_pred             CCchhhHHHHHHHHHhCCCEEEcccCC
Confidence            9976544555 4555565677766543

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.046  Score=41.35  Aligned_cols=100  Identities=18%  Similarity=0.173  Sum_probs=58.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH-HHHHHHHh---hCCCe---eeecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE-KVAILKEK---LGFDD---AFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~-~~~~~~~~---~g~~~---~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      ++++++|+   |++|...++.+...|++|++++++.. +.+.+.++   .+...   ..|..+.++....+.+...  ++
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG   84 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            46789999   89999999888888999999887643 33322212   23211   1244443123222332222  26


Q ss_pred             ccEEEcCCChH--------------------HHHHHHHhhccCcEEEEEccc
Q 043295          104 IDVYFDNVGGE--------------------MLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       104 ~d~vid~~g~~--------------------~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      +|+++.+.|..                    .++.+...+..+|+++.++..
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~  136 (248)
T PRK07806         85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSH  136 (248)
T ss_pred             CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCc
Confidence            89888777531                    223344455556888888653

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.63  E-value=0.06  Score=38.70  Aligned_cols=89  Identities=15%  Similarity=0.127  Sum_probs=59.6

Q ss_pred             EEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcCCCh--
Q 043295           40 VFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDNVGG--  113 (223)
Q Consensus        40 vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~~g~--  113 (223)
                      |+|.   |.+|..+++.+...|.+|++.++++.+.+.   ..+++.+ .|..+   . +.+.+... ++|.||.+.|.  
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d---~-~~~~~al~-~~d~vi~~~~~~~   72 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFD---P-DSVKAALK-GADAVIHAAGPPP   72 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTC---H-HHHHHHHT-TSSEEEECCHSTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehh---h-hhhhhhhh-hcchhhhhhhhhc
Confidence            5777   889999999999999999999999988765   2233322 23322   2 33333333 59999999982  


Q ss_pred             ---HHHHHHHHhhccC--cEEEEEcccc
Q 043295          114 ---EMLEAAVANMNLF--GRVAACGVIS  136 (223)
Q Consensus       114 ---~~~~~~~~~l~~~--G~~v~~g~~~  136 (223)
                         +......+.++..  .+++.++...
T Consensus        73 ~~~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   73 KDVDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             THHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             ccccccccccccccccccccceeeeccc
Confidence               3455566666444  3777776544

...

>PRK00811 spermidine synthase; Provisional

Probab=96.62  E-value=0.04  Score=42.93  Aligned_cols=95  Identities=14%  Similarity=0.072  Sum_probs=62.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCC--------CeeeecCCcccHHHHHHHhCCCCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGF--------DDAFNYKEETDLKATLKRYFPDGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~--------~~~~~~~~~~~~~~~i~~~~~~~~  104 (223)
                      ...++||+. ||.|..+..+++..+. +|+++..+++-.+.+++.+..        ..+ ..... +..+.+.. .++.+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv-~v~~~-Da~~~l~~-~~~~y  151 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRV-ELVIG-DGIKFVAE-TENSF  151 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCce-EEEEC-chHHHHhh-CCCcc
Confidence            567899999 8889999999987665 899999999888888743321        111 11111 33333433 33479


Q ss_pred             cEEEcCC-C----------hHHHHHHHHhhccCcEEEEE
Q 043295          105 DVYFDNV-G----------GEMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       105 d~vid~~-g----------~~~~~~~~~~l~~~G~~v~~  132 (223)
                      |+|+--. .          .+.+..+.+.|+++|.++.-
T Consensus       152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9887432 1          12356778899999999864

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.017  Score=44.18  Aligned_cols=78  Identities=23%  Similarity=0.334  Sum_probs=50.9

Q ss_pred             hCCCEEEEE---C-chHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh----hCCCee----eecCCcccHHHHHHHhCC-
Q 043295           35 QKGEKVFVS---G-AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK----LGFDDA----FNYKEETDLKATLKRYFP-  101 (223)
Q Consensus        35 ~~g~~vlI~---g-~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~----~g~~~~----~~~~~~~~~~~~i~~~~~-  101 (223)
                      .++++++|+   | ++|.++++.+...|++|+.+++++++.+...++    ++...+    .|..+.++....+.+... 
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   94 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER   94 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            457899999   4 699999999999999999999888766544322    343222    244433122222322211 


Q ss_pred             -CCccEEEcCCC
Q 043295          102 -DGIDVYFDNVG  112 (223)
Q Consensus       102 -~~~d~vid~~g  112 (223)
                       +++|+++.+.|
T Consensus        95 ~g~id~li~~ag  106 (262)
T PRK07831         95 LGRLDVLVNNAG  106 (262)
T ss_pred             cCCCCEEEECCC
Confidence             36899999997

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.013  Score=44.75  Aligned_cols=77  Identities=13%  Similarity=0.126  Sum_probs=50.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhC-----CC---eeeecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG-----FD---DAFNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g-----~~---~~~~~~~~~~~~~~i~~~~~--~  102 (223)
                      .+++++|.   |++|..+++.....|++|+.+++++++.+.+.+++.     ..   ...|..+.+++...+.+...  +
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   85 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG   85 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46789999   899999998888899999999998877665543332     11   11233333123333333221  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++.+.|
T Consensus        86 ~id~li~~ag   95 (260)
T PRK07063         86 PLDVLVNNAG   95 (260)
T ss_pred             CCcEEEECCC
Confidence            6999999887

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.015  Score=43.48  Aligned_cols=74  Identities=16%  Similarity=0.177  Sum_probs=48.6

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee--eecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA--FNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      ++++|.   |++|...++.....|++|+++++++++.+.++ +++-...  .|-.+.+++.+.+....++++|+++.+.|
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag   80 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ-ALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG   80 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH-hccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence            467888   88999888887788999999999887766665 4432222  34334312333333333347999998775

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.013  Score=44.60  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=51.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CC-Cee--eecCCcccHHHHHHHhC--CCC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GF-DDA--FNYKEETDLKATLKRYF--PDG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~-~~~--~~~~~~~~~~~~i~~~~--~~~  103 (223)
                      ..+++++|.   |++|..+++.+...|++|+++++++++.+.+.+.+   +. ..+  .|..+.+++.+.+.+..  .++
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT   86 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            357899999   89999999888889999999999988776554232   11 112  23333212333232221  136


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        87 ~d~li~~ag   95 (258)
T PRK06949         87 IDILVNNSG   95 (258)
T ss_pred             CCEEEECCC
Confidence            899999887

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=96.61  E-value=0.024  Score=43.97  Aligned_cols=78  Identities=21%  Similarity=0.296  Sum_probs=58.9

Q ss_pred             hCCCEEEEE---CchHHHHH-HHHHHcCCeEEEEecCHHHHHHHHHhh----CC---CeeeecCCcccHHHHHHHhCCC-
Q 043295           35 QKGEKVFVS---GAYGHLVG-QYAKLGGCYVVGSAGTNEKVAILKEKL----GF---DDAFNYKEETDLKATLKRYFPD-  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~-qla~~~g~~v~~~~~~~~~~~~~~~~~----g~---~~~~~~~~~~~~~~~i~~~~~~-  102 (223)
                      +-|+|.+|.   .++|.+-+ ++|+ .|.+|+-++|+++|++.++++.    ++   ..++|+.+.+..-+.+++...+ 
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~  125 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGL  125 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCC
Confidence            557899999   78997655 6666 9999999999999998776543    43   2347777763346677777777 


Q ss_pred             CccEEEcCCCh
Q 043295          103 GIDVYFDNVGG  113 (223)
Q Consensus       103 ~~d~vid~~g~  113 (223)
                      .+.+.++++|-
T Consensus       126 ~VgILVNNvG~  136 (312)
T KOG1014|consen  126 DVGILVNNVGM  136 (312)
T ss_pred             ceEEEEecccc
Confidence            88999999983

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.61  E-value=0.0039  Score=51.82  Aligned_cols=88  Identities=19%  Similarity=0.186  Sum_probs=59.1

Q ss_pred             hCCCEEE----EE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-eeeecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVF----VS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DAFNYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vl----I~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      ++|+.+|    |+   |++|.+++|+++..|++|+++...+.+....+ ..+.+ .++|.+.. .+.+.+....      
T Consensus        32 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~d~~~~-~~~~~l~~~~------  103 (450)
T PRK08261         32 RPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAAGW-GDRFGALVFDATGI-TDPADLKALY------  103 (450)
T ss_pred             CCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccccccCc-CCcccEEEEECCCC-CCHHHHHHHH------
Confidence            6777776    66   89999999999999999999887665443333 33443 45555543 3333333221      


Q ss_pred             EEcCCChHHHHHHHHhhccCcEEEEEccccc
Q 043295          107 YFDNVGGEMLEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       107 vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                             ..+...++.|.++|+++.++....
T Consensus       104 -------~~~~~~l~~l~~~griv~i~s~~~  127 (450)
T PRK08261        104 -------EFFHPVLRSLAPCGRVVVLGRPPE  127 (450)
T ss_pred             -------HHHHHHHHhccCCCEEEEEccccc
Confidence                   345567778888899998886543

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.61  E-value=0.024  Score=43.55  Aligned_cols=77  Identities=22%  Similarity=0.333  Sum_probs=50.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCC-e--eeecCCcccHHHHHHHhCC-CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFD-D--AFNYKEETDLKATLKRYFP-DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~-~--~~~~~~~~~~~~~i~~~~~-~~~  104 (223)
                      ++++++|+   +++|.+.++.....|++|+.++++.++.+.+.+++    +.. .  ..|-.+.++....+.+... +++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i   86 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP   86 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence            46789999   79999999999999999999999887766554333    221 1  1233333122222332221 369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        87 D~lv~nag   94 (263)
T PRK08339         87 DIFFFSTG   94 (263)
T ss_pred             cEEEECCC
Confidence            99998886

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=96.60  E-value=0.12  Score=39.00  Aligned_cols=96  Identities=16%  Similarity=0.099  Sum_probs=65.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhC----CCCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYF----PDGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~----~~~~  104 (223)
                      .++++||-. ++.|..++.+++..+  .+|+++..+++..+.+++   +.|...-+..... +..+.+.++.    .+.|
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~g-da~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQS-DALSALDQLLNNDPKPEF  145 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHHhCCCCCCC
Confidence            678888888 788998888888763  499999999988777763   2354322222222 3444444432    2379


Q ss_pred             cEEEcCCC-h---HHHHHHHHhhccCcEEEE
Q 043295          105 DVYFDNVG-G---EMLEAAVANMNLFGRVAA  131 (223)
Q Consensus       105 d~vid~~g-~---~~~~~~~~~l~~~G~~v~  131 (223)
                      |+||--.. .   ..+..+++++++||.++.
T Consensus       146 D~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        146 DFAFVDADKPNYVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            99974433 2   467788899999998775

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.59  E-value=0.015  Score=44.52  Aligned_cols=78  Identities=15%  Similarity=0.195  Sum_probs=50.5

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC-ee--eecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD-DA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      -+++++||.   |++|...++.....|++|+.+++++++.+.+.+.+   +.. ..  .|..+.+.....+.+...  ++
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR   87 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            357889999   78999999988889999999999887765544232   221 11  344443122222222211  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        88 id~vi~~Ag   96 (263)
T PRK07814         88 LDIVVNNVG   96 (263)
T ss_pred             CCEEEECCC
Confidence            999999887

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.59  E-value=0.061  Score=39.30  Aligned_cols=97  Identities=20%  Similarity=0.178  Sum_probs=56.8

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhC----CCe-eeecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG----FDD-AFNYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g----~~~-~~~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      -++.+++|.   |++|...+..+...|++|+.+.++.++.+.+.+.++    ... ..+..+.+++.+.++     +.|+
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~di  100 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK-----GADV  100 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh-----cCCE
Confidence            366789999   789988888877889999999999887766653442    211 122222112222221     4899


Q ss_pred             EEcCCChHHH--HHHHHhhccCcEEEEEcccc
Q 043295          107 YFDNVGGEML--EAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       107 vid~~g~~~~--~~~~~~l~~~G~~v~~g~~~  136 (223)
                      ||.++.....  ...-...+++-.++.+..++
T Consensus       101 Vi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~  132 (194)
T cd01078         101 VFAAGAAGVELLEKLAWAPKPLAVAADVNAVP  132 (194)
T ss_pred             EEECCCCCceechhhhcccCceeEEEEccCCC
Confidence            9998875331  11111233333455555544

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.56  E-value=0.016  Score=44.80  Aligned_cols=77  Identities=18%  Similarity=0.200  Sum_probs=50.7

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe---eeecCCcccHHHHHHHhCC--CCccEEE
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD---AFNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      +++++|+   |++|.+.++.+...|++|+++++++++.+.+.+..+...   ..|..+.+.....+.+...  +++|+++
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv   83 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVLV   83 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence            5678999   899999998888889999999999888776662222211   1244333123333333222  2589999


Q ss_pred             cCCCh
Q 043295          109 DNVGG  113 (223)
Q Consensus       109 d~~g~  113 (223)
                      .+.|.
T Consensus        84 ~~ag~   88 (277)
T PRK06180         84 NNAGY   88 (277)
T ss_pred             ECCCc
Confidence            98874

>PLN02366 spermidine synthase

Probab=96.55  E-value=0.05  Score=42.83  Aligned_cols=98  Identities=17%  Similarity=0.122  Sum_probs=62.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCC-Ceee-----ecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGF-DDAF-----NYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~-~~~~-----~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      ...++||+. ||-|..+..+++.-+. +|.++..++.-.+.+++.+.. ...+     ..... +..+.+++..++.+|+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~-Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIG-DGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEC-hHHHHHhhccCCCCCE
Confidence            567899999 8889999999888665 788888888777777733321 0001     11111 3333444333347998


Q ss_pred             EE-cCCC----------hHHHHHHHHhhccCcEEEEEc
Q 043295          107 YF-DNVG----------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       107 vi-d~~g----------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      || |+..          .+.+..+.++|+++|.++.-+
T Consensus       169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            86 3322          124678889999999997643

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.55  E-value=0.044  Score=46.62  Aligned_cols=41  Identities=17%  Similarity=0.165  Sum_probs=34.9

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHH
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK   75 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~   75 (223)
                      ..|+++||.   |++|..+++.+...|++|++++++.++.+.+.
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~  121 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV  121 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            578889999   89999999888888999999999988765543

>PRK06196 oxidoreductase; Provisional

Probab=96.55  E-value=0.02  Score=45.19  Aligned_cols=78  Identities=15%  Similarity=0.254  Sum_probs=51.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhC-CCe-eeecCCcccHHHHHHHhCC--CCccEE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG-FDD-AFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g-~~~-~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      -.+++++|+   |++|..++......|++|+.++++.++.+.+.+++. ... ..|-.+.++..+.+.+...  +++|++
T Consensus        24 l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l  103 (315)
T PRK06196         24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDIL  103 (315)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEE
Confidence            357899999   899999998888889999999999877665542332 211 1243333123333333322  379999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +.+.|
T Consensus       104 i~nAg  108 (315)
T PRK06196        104 INNAG  108 (315)
T ss_pred             EECCC
Confidence            99886

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.55  E-value=0.017  Score=43.79  Aligned_cols=78  Identities=18%  Similarity=0.261  Sum_probs=50.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhC--CC---eeeecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG--FD---DAFNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g--~~---~~~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      ++.+++|.   |++|..+++.....|++|+.+++++++.+.+.+.+.  ..   ...|..+.+++...+.+...  +++|
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   83 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVD   83 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            45789999   889998888888889999999999887665543433  11   11233333233333332211  2689


Q ss_pred             EEEcCCCh
Q 043295          106 VYFDNVGG  113 (223)
Q Consensus       106 ~vid~~g~  113 (223)
                      ++|.+.|.
T Consensus        84 ~vi~~ag~   91 (251)
T PRK07231         84 ILVNNAGT   91 (251)
T ss_pred             EEEECCCC
Confidence            99998873

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.54  E-value=0.14  Score=39.05  Aligned_cols=96  Identities=11%  Similarity=0.065  Sum_probs=67.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhC-----CCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYF-----PDG  103 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~-----~~~  103 (223)
                      .+.++||-. ..+|..++.+|+..  +.+|+++..+++..+.+++   +.|...-++.... +..+.+.++.     .+.
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G-~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG-PALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEec-cHHHHHHHHHhccccCCc
Confidence            567788888 89999999999876  5699999999887776653   3465333343333 4555555543     147


Q ss_pred             ccEEE-cCCCh---HHHHHHHHhhccCcEEEE
Q 043295          104 IDVYF-DNVGG---EMLEAAVANMNLFGRVAA  131 (223)
Q Consensus       104 ~d~vi-d~~g~---~~~~~~~~~l~~~G~~v~  131 (223)
                      ||+|| |+--.   .+++.+++++++||.++.
T Consensus       157 fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        157 FDFIFVDADKDNYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             ccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence            99996 44433   367788999999998764

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=96.53  E-value=0.018  Score=42.32  Aligned_cols=94  Identities=17%  Similarity=0.062  Sum_probs=60.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||-. +|.|..+..+++. |.+|++++.++.-.+.+++.   .+...+ ..... ++.+ .  ..++.+|+|+..
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v-~~~~~-d~~~-~--~~~~~fD~I~~~  102 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNL-HTAVV-DLNN-L--TFDGEYDFILST  102 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcc-eEEec-Chhh-C--CcCCCcCEEEEe
Confidence            566788888 8889999999875 88999999998877666522   222211 11111 2211 0  112369999864


Q ss_pred             CC-----h----HHHHHHHHhhccCcEEEEEcc
Q 043295          111 VG-----G----EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       111 ~g-----~----~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      ..     .    ..+....++|++||.++.+..
T Consensus       103 ~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~  135 (197)
T PRK11207        103 VVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  135 (197)
T ss_pred             cchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            32     1    246677789999999765543

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.52  E-value=0.015  Score=44.22  Aligned_cols=77  Identities=18%  Similarity=0.276  Sum_probs=50.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC---eeeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD---DAFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .++++||+   |++|...++.....|++|+.++++.++.+.+.+++   +..   ...|..+.++..+.+.+...  +++
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            57889999   79999999888889999999999887766554333   221   11333333133333332221  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        88 d~lv~~ag   95 (253)
T PRK05867         88 DIAVCNAG   95 (253)
T ss_pred             CEEEECCC
Confidence            99998876

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.015  Score=45.46  Aligned_cols=77  Identities=18%  Similarity=0.343  Sum_probs=49.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC-ee--eecCCcccHHHHHHHhC--CCCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD-DA--FNYKEETDLKATLKRYF--PDGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~~--~~~~~~~~~~~~i~~~~--~~~~  104 (223)
                      .+++++|+   |++|.+.++.+...|++|+.++++.++.+.+.+++   +.. ..  .|-.+.+...+.+....  -+++
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  118 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV  118 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            45789999   89999999888888999999999987766554232   321 11  23333312222222221  1369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus       119 d~li~~AG  126 (293)
T PRK05866        119 DILINNAG  126 (293)
T ss_pred             CEEEECCC
Confidence            99999987

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.50  E-value=0.02  Score=42.72  Aligned_cols=97  Identities=15%  Similarity=0.067  Sum_probs=60.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee---------ecCCcccHHHHHHHhC--C-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF---------NYKEETDLKATLKRYF--P-  101 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~---------~~~~~~~~~~~i~~~~--~-  101 (223)
                      .++.+||+. .|.|.-+.-+|. .|++|++++.++.-.+.+.++.+.....         ...+-+-+...+.+..  . 
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~-~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~  114 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAE-QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL  114 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHh-CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence            567899999 899999999986 6999999999998777654344432110         0000000000111111  1 


Q ss_pred             CCccEEEcCCC---------hHHHHHHHHhhccCcEEEEE
Q 043295          102 DGIDVYFDNVG---------GEMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       102 ~~~d~vid~~g---------~~~~~~~~~~l~~~G~~v~~  132 (223)
                      +.+|.|+|...         ...+....++|+|||+++.+
T Consensus       115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            25899998653         13577888899999875543

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.48  E-value=0.022  Score=43.33  Aligned_cols=76  Identities=14%  Similarity=0.263  Sum_probs=48.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe--e--eecCCcccHHHHHHHhCC--CCccE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD--A--FNYKEETDLKATLKRYFP--DGIDV  106 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~--~--~~~~~~~~~~~~i~~~~~--~~~d~  106 (223)
                      ++++++|+   |++|...++.....|++|+.++++++..+... ++....  .  .|-.+.+++.+.+.+...  +++|+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAA-QLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            57899999   89999999888889999999998876544444 332211  1  233332122222222211  26899


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ++.+.|
T Consensus        93 vi~~ag   98 (255)
T PRK06841         93 LVNSAG   98 (255)
T ss_pred             EEECCC
Confidence            999887

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.018  Score=43.92  Aligned_cols=77  Identities=22%  Similarity=0.238  Sum_probs=50.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC---eeeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD---DAFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      ++++++|.   |++|...++.....|++|+.+++++++.+.+.+++   +..   ...|..+.+.+...+.+...  +++
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRV   83 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCc
Confidence            46789999   89999999988889999999999887765554333   221   12333333123332322211  368


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        84 d~vi~~ag   91 (258)
T PRK07890         84 DALVNNAF   91 (258)
T ss_pred             cEEEECCc
Confidence            99998886

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.074  Score=40.97  Aligned_cols=74  Identities=16%  Similarity=0.193  Sum_probs=47.1

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCe----eeecCCcccHHHHHHHhCC--CCccE
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDD----AFNYKEETDLKATLKRYFP--DGIDV  106 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~----~~~~~~~~~~~~~i~~~~~--~~~d~  106 (223)
                      +++|+   |++|..+++.+...|++|+.+++++++.+.+.++   .+...    ..|..+.++..+.+.+...  +++|+
T Consensus         2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   81 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDV   81 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            67888   8999999998888999999999887765444322   23321    2354443122222222211  36999


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ++.+.|
T Consensus        82 lv~~ag   87 (272)
T PRK07832         82 VMNIAG   87 (272)
T ss_pred             EEECCC
Confidence            999887

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.032  Score=42.48  Aligned_cols=72  Identities=15%  Similarity=0.306  Sum_probs=48.6

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCC-ee--eecCCcccHHHHHHHhCCCCccEE
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFD-DA--FNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~~--~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      ++++||+   |++|..+++.+...|++|+++++++.+.+.+.+.   .+.. .+  .|..+.    +.+.+...+++|++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~~~~~~id~v   77 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDA----IDRAQAAEWDVDVL   77 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCH----HHHHHHhcCCCCEE
Confidence            4578999   8999999999999999999999987766555421   2221 11  233332    23333333479999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      |.+.|
T Consensus        78 i~~ag   82 (257)
T PRK09291         78 LNNAG   82 (257)
T ss_pred             EECCC
Confidence            99887

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.44  E-value=0.064  Score=39.04  Aligned_cols=94  Identities=19%  Similarity=0.202  Sum_probs=63.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      +++.+||-. +|.|..+..+++.. +++|++++.+++..+.+++   +.+.+.+ ..... +..+ +..  .+.+|+|+-
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i-~~~~~-d~~~-~~~--~~~fDlV~~  118 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNV-TVVHG-RAEE-FGQ--EEKFDVVTS  118 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCE-EEEec-cHhh-CCC--CCCccEEEE
Confidence            558888888 78898888888755 6799999999887766652   3454432 22222 2222 211  237999986


Q ss_pred             CCC-h--HHHHHHHHhhccCcEEEEEc
Q 043295          110 NVG-G--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       110 ~~g-~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ... .  ..+..+.+.|+++|+++.+-
T Consensus       119 ~~~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        119 RAVASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             ccccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            433 2  45778889999999999874

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.024  Score=43.19  Aligned_cols=77  Identities=22%  Similarity=0.333  Sum_probs=49.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      ++++++|.   |++|...++.....|++|+.+++++++.+.+.+++   +... .  .|..+.++....+.+...  +++
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL   84 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            46788999   79999999888889999999999888766554333   3221 1  233333122222332222  269


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        85 d~li~~ag   92 (254)
T PRK07478         85 DIAFNNAG   92 (254)
T ss_pred             CEEEECCC
Confidence            99998886

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.024  Score=42.53  Aligned_cols=77  Identities=10%  Similarity=0.147  Sum_probs=47.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCee-eecCCcccHHHHHHHhCC--CCccE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDA-FNYKEETDLKATLKRYFP--DGIDV  106 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~-~~~~~~~~~~~~i~~~~~--~~~d~  106 (223)
                      +++++||+   |++|..+++.....|++|+.+++++.+.....++   .+...+ .|..+..++.+.+.+...  +++|+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   85 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDA   85 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCE
Confidence            46789999   8999999988888899999999877654322212   222221 233332122222222221  26899


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ++.+.|
T Consensus        86 vi~~ag   91 (239)
T PRK12828         86 LVNIAG   91 (239)
T ss_pred             EEECCc
Confidence            998876

>PRK06484 short chain dehydrogenase; Validated

Probab=96.41  E-value=0.02  Score=48.50  Aligned_cols=77  Identities=25%  Similarity=0.354  Sum_probs=53.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe---eeecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD---AFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      ++++++|+   +++|.+.++.....|++|+.++++.++.+.+.++++...   ..|..+.+++.+.+.....  +++|++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   83 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDVL   83 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence            57889999   889999999988999999999998888776654665422   2344443233333333222  369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        84 i~nag   88 (520)
T PRK06484         84 VNNAG   88 (520)
T ss_pred             EECCC
Confidence            98876

>PRK04457 spermidine synthase; Provisional

Probab=96.41  E-value=0.23  Score=38.26  Aligned_cols=96  Identities=10%  Similarity=0.087  Sum_probs=65.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCe---eeecCCcccHHHHHHHhCCCCccEEE-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDD---AFNYKEETDLKATLKRYFPDGIDVYF-  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~i~~~~~~~~d~vi-  108 (223)
                      .++++||+. +|.|..+..+++.. +.+|+++..+++-.+.+++.++...   -+..... +..+.+.+. ++.+|+|+ 
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~-Da~~~l~~~-~~~yD~I~~  142 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEA-DGAEYIAVH-RHSTDVILV  142 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEEC-CHHHHHHhC-CCCCCEEEE
Confidence            566789999 78899998898877 5699999999998888885454311   1111112 344444432 34799886 


Q ss_pred             cCCC----------hHHHHHHHHhhccCcEEEEE
Q 043295          109 DNVG----------GEMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       109 d~~g----------~~~~~~~~~~l~~~G~~v~~  132 (223)
                      |...          .+.+..+.++|+++|.++.-
T Consensus       143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            3321          24577888999999999873

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.022  Score=42.78  Aligned_cols=77  Identities=18%  Similarity=0.305  Sum_probs=49.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC-C--ee--eecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF-D--DA--FNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~-~--~~--~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      ++.+++|+   |++|..+++.....|++|+++++++.+.+.+.+++.. .  ..  .|..+..++.+.+.....  +++|
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD   84 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            45788998   8999999888877899999999988776655434432 1  11  233333233333333221  2699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      ++|++.|
T Consensus        85 ~vi~~ag   91 (237)
T PRK07326         85 VLIANAG   91 (237)
T ss_pred             EEEECCC
Confidence            9998876

>PRK09186 flagellin modification protein A; Provisional

Probab=96.39  E-value=0.025  Score=43.01  Aligned_cols=77  Identities=18%  Similarity=0.209  Sum_probs=50.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCC---e-eeecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFD---D-AFNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~---~-~~~~~~~~~~~~~i~~~~~--~  102 (223)
                      ++++++|.   |++|...+......|++|+.+++++++.+.+.+++    +..   . ..|-.+.+.+.+.+.+...  +
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   82 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG   82 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            46889999   79999999888889999999998887765553333    221   1 2244433233333333222  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++.+.+
T Consensus        83 ~id~vi~~A~   92 (256)
T PRK09186         83 KIDGAVNCAY   92 (256)
T ss_pred             CccEEEECCc
Confidence            6899999875

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.38  E-value=0.053  Score=40.08  Aligned_cols=95  Identities=16%  Similarity=0.065  Sum_probs=61.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      .++++||-. +|.|..+..+++..+  .+|++++.+++-.+.+++   ..+....+..... +..+.+.  ..+.||+|+
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~-d~~~~~~--~~~~fD~Ii  147 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG-DGKRGLE--KHAPFDAII  147 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC-CcccCCc--cCCCccEEE
Confidence            788898888 889999988888774  599999999887666653   2343211111111 1111111  113699988


Q ss_pred             cCCCh-HHHHHHHHhhccCcEEEEE
Q 043295          109 DNVGG-EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       109 d~~g~-~~~~~~~~~l~~~G~~v~~  132 (223)
                      -+... ......++.|++||+++..
T Consensus       148 ~~~~~~~~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        148 VTAAASTIPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             EccCcchhhHHHHHhcCcCcEEEEE
Confidence            65553 3456677899999999764

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.37  E-value=0.12  Score=39.50  Aligned_cols=96  Identities=15%  Similarity=0.178  Sum_probs=62.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||-. +|.|..+..+++. |.+|++++.+++.++.+++.   .|...-+..... +.. .+.....+.+|+|+..
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~-d~~-~l~~~~~~~fD~V~~~  119 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC-AAQ-DIAQHLETPVDLILFH  119 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEc-CHH-HHhhhcCCCCCEEEeh
Confidence            456788877 8999999999885 88999999999988877732   232111111111 121 2222233479998743


Q ss_pred             C-----Ch--HHHHHHHHhhccCcEEEEEc
Q 043295          111 V-----GG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       111 ~-----g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      .     ..  ..+..+.+.|+|||.++.+.
T Consensus       120 ~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        120 AVLEWVADPKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             hHHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            2     22  35778889999999998653

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.36  E-value=0.2  Score=37.66  Aligned_cols=102  Identities=15%  Similarity=0.086  Sum_probs=58.7

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCH------H-------------HHHHHHH---hhCC-CeeeecCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTN------E-------------KVAILKE---KLGF-DDAFNYKE   88 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~------~-------------~~~~~~~---~~g~-~~~~~~~~   88 (223)
                      -+..+|+|.  |+||..++....+.|+ ++..++..+      .             |.+.+++   .... .++.-.++
T Consensus        28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~  107 (263)
T COG1179          28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIND  107 (263)
T ss_pred             HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHh
Confidence            355778888  9999999999988888 665555221      1             1111111   1111 11211111


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCChH--HHHHHHHhhccCcEEEEEccccc
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGGE--MLEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~~--~~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      . =..+.+.++...++|+|+||+..-  .......|.+.+=.++..+..++
T Consensus       108 f-~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~  157 (263)
T COG1179         108 F-ITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGG  157 (263)
T ss_pred             h-hCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccC
Confidence            1 123455666666899999999873  33344446666667777765544

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.34  E-value=0.037  Score=41.35  Aligned_cols=73  Identities=12%  Similarity=0.200  Sum_probs=48.4

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      +++|.   |++|...++.....|++|+.+++++++.+.+.++++...+ .|..+.+++.+.+.+.. +.+|+++++.|
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~-~~id~lv~~ag   78 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFP-HHLDTIVNVPA   78 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHh-hcCcEEEECCC
Confidence            47888   7999999988888899999999998887766535554322 34444312333333322 35898888754

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.34  E-value=0.028  Score=42.82  Aligned_cols=77  Identities=22%  Similarity=0.386  Sum_probs=49.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhC--CCCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYF--PDGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~--~~~~  104 (223)
                      .++++||+   |++|...++.+...|++|+.+++++++.+.+.+.+   |... .  .|..+..++.+.+.+..  -+++
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   88 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPI   88 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            57899999   89999999888888999999998877654433222   2211 1  24443312222232221  1368


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |++|.+.|
T Consensus        89 d~li~~ag   96 (255)
T PRK07523         89 DILVNNAG   96 (255)
T ss_pred             CEEEECCC
Confidence            99999887

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.33  E-value=0.054  Score=36.06  Aligned_cols=94  Identities=18%  Similarity=0.200  Sum_probs=62.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHH---hhCCCee--eecCCcccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKE---KLGFDDA--FNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~---~~g~~~~--~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      .++++|+-. .+.|..+..+++..+ .+|++++.++...+.+++   .++...+  +..+    ...... ...+.+|+|
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~D~v   92 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGD----APEALE-DSLPEPDRV   92 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecc----ccccCh-hhcCCCCEE
Confidence            567777777 777999999999874 699999999988777652   2343322  1111    110011 112369999


Q ss_pred             EcCCCh----HHHHHHHHhhccCcEEEEEc
Q 043295          108 FDNVGG----EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       108 id~~g~----~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +-..+.    ..++.+.+.|+++|.++...
T Consensus        93 ~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        93 FIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             EECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            865432    35778899999999998653

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.32  E-value=0.027  Score=44.49  Aligned_cols=77  Identities=14%  Similarity=0.182  Sum_probs=49.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh-----CCC-e--eeecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL-----GFD-D--AFNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~-----g~~-~--~~~~~~~~~~~~~i~~~~~--~  102 (223)
                      .+++++|+   +++|.+.++.....|++|+.++++.++.+.+.+++     +.. .  ..|-.+.++..+.+.++..  +
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            56889999   89999999888888999999999987765443232     111 1  1243333122222222221  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        93 ~iD~li~nAG  102 (313)
T PRK05854         93 PIHLLINNAG  102 (313)
T ss_pred             CccEEEECCc
Confidence            6899998876

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.32  E-value=0.035  Score=45.56  Aligned_cols=96  Identities=13%  Similarity=0.046  Sum_probs=61.1

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      -.+.+++|.  |++|.+++..+...|+ +++.+.++.++.+.+.++++...+..+.   ++.+.+.     .+|+||.|+
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~---~l~~~l~-----~aDiVI~aT  250 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLS---ELPQLIK-----KADIIIAAV  250 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHH---HHHHHhc-----cCCEEEECc
Confidence            567899999  9999999999988997 7888899988776666466522232221   2222221     399999999


Q ss_pred             ChHHHHHHHHhhccC-cEEEEEcccccc
Q 043295          112 GGEMLEAAVANMNLF-GRVAACGVISEC  138 (223)
Q Consensus       112 g~~~~~~~~~~l~~~-G~~v~~g~~~~~  138 (223)
                      +++..--....++.. =.++.++.|.+-
T Consensus       251 ~a~~~vi~~~~~~~~~~~~iDLavPRdi  278 (414)
T PRK13940        251 NVLEYIVTCKYVGDKPRVFIDISIPQAL  278 (414)
T ss_pred             CCCCeeECHHHhCCCCeEEEEeCCCCCC
Confidence            975321111222211 245777776553

>PRK06484 short chain dehydrogenase; Validated

Probab=96.29  E-value=0.026  Score=47.87  Aligned_cols=102  Identities=20%  Similarity=0.216  Sum_probs=67.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe---eeecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD---AFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .++++||+   +++|...++.....|++|+.++++.++.+.+.++++...   ..|..+.++....+.+...  +.+|++
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l  347 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDVL  347 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46788999   899999998888899999999999888877764555432   2344443233333333322  369999


Q ss_pred             EcCCChH------------HH---------------HHHHHhhccCcEEEEEccccc
Q 043295          108 FDNVGGE------------ML---------------EAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       108 id~~g~~------------~~---------------~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      +.+.|..            .+               +.++..+..+|+++.++....
T Consensus       348 i~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~  404 (520)
T PRK06484        348 VNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIAS  404 (520)
T ss_pred             EECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhh
Confidence            9987721            11               122345556799998886554

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.048  Score=40.59  Aligned_cols=75  Identities=16%  Similarity=0.200  Sum_probs=49.5

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-eeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      ++++|+   |++|...++.....|++|+.++++.++.+.++ ..+.. ...|-.+.+.+...+.+..++++|+++.+.|.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~   80 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQ-ALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV   80 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHH-hccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            467888   89999888877778999999999888777776 55543 22344443123222223333379999987763

>PRK05717 oxidoreductase; Validated

Probab=96.29  E-value=0.034  Score=42.38  Aligned_cols=78  Identities=18%  Similarity=0.240  Sum_probs=50.0

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe---eeecCCcccHHHHHHHhCC--CCccE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD---AFNYKEETDLKATLKRYFP--DGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~i~~~~~--~~~d~  106 (223)
                      ..+++++|+   |++|..++......|++|+.++++..+.+.+.++++...   ..|..+.++..+.+.+...  +.+|+
T Consensus         8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   87 (255)
T PRK05717          8 HNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDA   87 (255)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            357889999   899999988888889999999888766555442444321   1333333123222333322  25899


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ++.+.|
T Consensus        88 li~~ag   93 (255)
T PRK05717         88 LVCNAA   93 (255)
T ss_pred             EEECCC
Confidence            998887

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.28  E-value=0.03  Score=44.54  Aligned_cols=92  Identities=9%  Similarity=0.058  Sum_probs=60.0

Q ss_pred             hCCCEEEEE--CchHHHHHHH-HHHcCC-eEEEEecCHHHHHHHHHhh----CCCeeeecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS--GAYGHLVGQY-AKLGGC-YVVGSAGTNEKVAILKEKL----GFDDAFNYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~ql-a~~~g~-~v~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      +..++++|.  |..|...+.. +...++ +|....+++++.+.+.+++    +.. +..+.   ++.+.++     ..|+
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~~---~~~~~~~-----~aDi  195 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVVN---SADEAIE-----EADI  195 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEeC---CHHHHHh-----cCCE
Confidence            556788888  8888766644 445677 7888888888766555333    332 11222   3333332     4899


Q ss_pred             EEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295          107 YFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       107 vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      |+.|+++...... +.+++|-.+..+|...
T Consensus       196 Vi~aT~s~~p~i~-~~l~~G~hV~~iGs~~  224 (325)
T PRK08618        196 IVTVTNAKTPVFS-EKLKKGVHINAVGSFM  224 (325)
T ss_pred             EEEccCCCCcchH-HhcCCCcEEEecCCCC
Confidence            9999987433334 7889988888888643

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.27  E-value=0.058  Score=41.83  Aligned_cols=92  Identities=14%  Similarity=0.098  Sum_probs=66.4

Q ss_pred             hccccchhhHHHHHHHHh--hCCCEEEEE--Cc-hHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCccc
Q 043295           17 NGAGTSGFTAYVGFYEIS--QKGEKVFVS--GA-YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETD   91 (223)
Q Consensus        17 a~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~-vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   91 (223)
                      .-+||+....+..+....  -.|++++|.  |. +|.-+++++...|++|+...+...                     +
T Consensus       136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~  194 (286)
T PRK14175        136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------D  194 (286)
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------h
Confidence            345666666666666665  789999999  55 999999999999999998774321                     2


Q ss_pred             HHHHHHHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEcccc
Q 043295           92 LKATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        92 ~~~~i~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      +.+.+++     .|+||.++|.+ .+..  +.++++..++.+|...
T Consensus       195 l~~~~~~-----ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi~~  233 (286)
T PRK14175        195 MASYLKD-----ADVIVSAVGKPGLVTK--DVVKEGAVIIDVGNTP  233 (286)
T ss_pred             HHHHHhh-----CCEEEECCCCCcccCH--HHcCCCcEEEEcCCCc
Confidence            2222222     89999999975 3333  4588899999998754

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.27  E-value=0.04  Score=42.07  Aligned_cols=75  Identities=19%  Similarity=0.336  Sum_probs=48.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCC-ee--eecCCcccHHHHHHHhCCCCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFD-DA--FNYKEETDLKATLKRYFPDGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~-~~--~~~~~~~~~~~~i~~~~~~~~d  105 (223)
                      .+++++|.   +++|...++.....|++|+.+++++++.+.+.+++    +.. ..  .|-.+.++..+.+.+.  +.+|
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~--g~id   83 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEA--GDID   83 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHh--CCCC
Confidence            46789999   79999999888889999999999887765544233    221 12  2333321222222221  3699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++.+.|
T Consensus        84 ~lv~~ag   90 (259)
T PRK06125         84 ILVNNAG   90 (259)
T ss_pred             EEEECCC
Confidence            9999876

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.25  E-value=0.041  Score=41.66  Aligned_cols=77  Identities=21%  Similarity=0.299  Sum_probs=49.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCe---eeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDD---AFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      ++++++|.   |++|..+++.+...|++|+.+++++.+.+...++   .+...   ..|-.+.+...+.+.....  +++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL   83 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46789999   8999999998888999999999887765544322   23321   1232232122222333222  368


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |.+|.+.|
T Consensus        84 d~vi~~ag   91 (253)
T PRK08217         84 NGLINNAG   91 (253)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.25  E-value=0.04  Score=43.65  Aligned_cols=77  Identities=12%  Similarity=0.182  Sum_probs=50.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC---C-ee--eecCCcccHHHHHHHhC--CCCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF---D-DA--FNYKEETDLKATLKRYF--PDGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~---~-~~--~~~~~~~~~~~~i~~~~--~~~~  104 (223)
                      ++++++|+   |++|...++.....|++|+.++++.++.+.+.++++.   . ..  .|-.+.++..+.+.+..  .+++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   84 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPL   84 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Confidence            46789999   8999999988888899999999988876655434421   1 11  23333212222232221  2369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |++|++.|
T Consensus        85 D~li~nAg   92 (322)
T PRK07453         85 DALVCNAA   92 (322)
T ss_pred             cEEEECCc
Confidence            99999877

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.23  E-value=0.03  Score=42.59  Aligned_cols=76  Identities=17%  Similarity=0.210  Sum_probs=48.6

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC-eee--ecCCcccHHHHHHHhCC--CCcc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD-DAF--NYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~~~--~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      +++++|.   |++|...++.....|++|+.+++++++.+.+.+++   +.. ..+  |-.+.++..+.+.+...  +++|
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID   80 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            4678898   89999999998889999999998887665544232   221 122  33333123332322221  3689


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++++.|
T Consensus        81 ~lI~~ag   87 (252)
T PRK07677         81 ALINNAA   87 (252)
T ss_pred             EEEECCC
Confidence            9998886

>PLN02253 xanthoxin dehydrogenase

Probab=96.19  E-value=0.042  Score=42.50  Aligned_cols=77  Identities=16%  Similarity=0.168  Sum_probs=49.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC--C-e--eeecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF--D-D--AFNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~--~-~--~~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      .+++++|.   |++|.+.++.....|++|+.+++++++.+.+.++++.  . .  ..|-.+.+...+.+.+...  +++|
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id   96 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLD   96 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            46789999   8999999988888899999999887665544434432  1 1  1344433123332332222  3699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++++.|
T Consensus        97 ~li~~Ag  103 (280)
T PLN02253         97 IMVNNAG  103 (280)
T ss_pred             EEEECCC
Confidence            9999876

>PRK00536 speE spermidine synthase; Provisional

Probab=96.19  E-value=0.037  Score=42.40  Aligned_cols=97  Identities=11%  Similarity=-0.017  Sum_probs=65.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC-CeeeecCCcccHHHHHHHhCCCCccEEE-cCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF-DDAFNYKEETDLKATLKRYFPDGIDVYF-DNV  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~~~~d~vi-d~~  111 (223)
                      ...++|||. ||=|.++-.++|.-. +|+.+.-.++-.+.+++-+.. ...++...- .+...+.+...+.+|+|| |+.
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv-~l~~~~~~~~~~~fDVIIvDs~  148 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNF-THAKQLLDLDIKKYDLIICLQE  148 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCE-EEeehhhhccCCcCCEEEEcCC
Confidence            667999999 999999999999865 999999888877888731321 112222222 222233333334799875 644


Q ss_pred             Ch-HHHHHHHHhhccCcEEEEEc
Q 043295          112 GG-EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 g~-~~~~~~~~~l~~~G~~v~~g  133 (223)
                      -. +.+..+.++|+++|.++.=+
T Consensus       149 ~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        149 PDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             CChHHHHHHHHhcCCCcEEEECC
Confidence            43 56788999999999998744

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.19  E-value=0.032  Score=43.18  Aligned_cols=77  Identities=21%  Similarity=0.299  Sum_probs=49.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .+++++|+   |++|.+.++.....|++|+.++++..+.+.+.+++   |...   ..|-.+.+++.+.+.+...  +++
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV   84 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            46789999   89999999888889999999998877665443233   3211   1233333122222222211  368


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        85 d~li~nAg   92 (275)
T PRK05876         85 DVVFSNAG   92 (275)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.068  Score=40.25  Aligned_cols=77  Identities=17%  Similarity=0.264  Sum_probs=50.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CC-C---eeeecCC---c--ccHHHHHHHhC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GF-D---DAFNYKE---E--TDLKATLKRYF  100 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~-~---~~~~~~~---~--~~~~~~i~~~~  100 (223)
                      ++++++|.   |++|...++.....|++|+.+++++++.+.+.+++   +. .   ...|..+   .  ..+.+.+.+..
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~   84 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEAT   84 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHh
Confidence            46789999   89999999888888999999999987765543232   21 1   1123221   1  12333444444


Q ss_pred             CCCccEEEcCCC
Q 043295          101 PDGIDVYFDNVG  112 (223)
Q Consensus       101 ~~~~d~vid~~g  112 (223)
                      .+.+|+++.+.|
T Consensus        85 ~~~id~vi~~ag   96 (239)
T PRK08703         85 QGKLDGIVHCAG   96 (239)
T ss_pred             CCCCCEEEEecc
Confidence            346899998887

>PRK09242 tropinone reductase; Provisional

Probab=96.17  E-value=0.034  Score=42.39  Aligned_cols=78  Identities=21%  Similarity=0.299  Sum_probs=49.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh-----CCCe---eeecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL-----GFDD---AFNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~-----g~~~---~~~~~~~~~~~~~i~~~~~--~  102 (223)
                      .+++++|.   |++|...++.....|++|+.++++.++.+.+.+++     +...   ..|..+.++....+.+...  +
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   87 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD   87 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            57889999   79999999888889999999999887765544232     2111   1233332122222222211  3


Q ss_pred             CccEEEcCCCh
Q 043295          103 GIDVYFDNVGG  113 (223)
Q Consensus       103 ~~d~vid~~g~  113 (223)
                      ++|+++.+.|.
T Consensus        88 ~id~li~~ag~   98 (257)
T PRK09242         88 GLHILVNNAGG   98 (257)
T ss_pred             CCCEEEECCCC
Confidence            69999999873

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.15  E-value=0.077  Score=37.88  Aligned_cols=93  Identities=16%  Similarity=0.064  Sum_probs=62.2

Q ss_pred             hccccchhhHHHHHHHHh--hCCCEEEEE--Cc-hHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCccc
Q 043295           17 NGAGTSGFTAYVGFYEIS--QKGEKVFVS--GA-YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETD   91 (223)
Q Consensus        17 a~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~-vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   91 (223)
                      ...|+....+...+....  -.+.+|+|.  |. +|..++..++..|++|+.+.++.+                     +
T Consensus        22 ~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------~   80 (168)
T cd01080          22 GFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK---------------------N   80 (168)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch---------------------h
Confidence            445555555665555554  688999999  65 588888998889999888776521                     2


Q ss_pred             HHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           92 LKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        92 ~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      +.+.+++     +|+||.+++.+.+ -..+.++++-.++.++.+.
T Consensus        81 l~~~l~~-----aDiVIsat~~~~i-i~~~~~~~~~viIDla~pr  119 (168)
T cd01080          81 LKEHTKQ-----ADIVIVAVGKPGL-VKGDMVKPGAVVIDVGINR  119 (168)
T ss_pred             HHHHHhh-----CCEEEEcCCCCce-ecHHHccCCeEEEEccCCC
Confidence            2222222     8999999987542 2223567777778888765

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.14  E-value=0.052  Score=41.44  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=49.2

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-e----eeecCCcccHHHHHHHhCC--CCccE
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-D----AFNYKEETDLKATLKRYFP--DGIDV  106 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~----~~~~~~~~~~~~~i~~~~~--~~~d~  106 (223)
                      +.+++|+   |++|...++.....|++|+.+++++++.+.+.+++... .    ..|-.+.+++.+.+.+...  +.+|+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~   81 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV   81 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            4678999   89999999888888999999999888776555333211 1    1333333233333333222  25899


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ++.+.|
T Consensus        82 lv~~ag   87 (257)
T PRK07024         82 VIANAG   87 (257)
T ss_pred             EEECCC
Confidence            998876

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.13  E-value=0.044  Score=38.34  Aligned_cols=93  Identities=25%  Similarity=0.183  Sum_probs=59.0

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCCCe-eeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGFDD-AFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+++|.  |.+|...++.....| .+|+.+++++++.+.+.++++... ..+..   +..+.+     +++|+|+.|
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~Dvvi~~   88 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYL---DLEELL-----AEADLIINT   88 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeec---chhhcc-----ccCCEEEeC
Confidence            457888888  888988888888776 689999988887766553665421 01111   222211     259999999


Q ss_pred             CChHHH-----HHHHHhhccCcEEEEEccc
Q 043295          111 VGGEML-----EAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       111 ~g~~~~-----~~~~~~l~~~G~~v~~g~~  135 (223)
                      ++....     ......++++..++.++..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~  118 (155)
T cd01065          89 TPVGMKPGDELPLPPSLLKPGGVVYDVVYN  118 (155)
T ss_pred             cCCCCCCCCCCCCCHHHcCCCCEEEEcCcC
Confidence            886432     1122346777777777653

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.12  E-value=0.052  Score=41.47  Aligned_cols=76  Identities=21%  Similarity=0.329  Sum_probs=50.6

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe----eeecCCcccHHHHHHHh---CCCCccEE
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD----AFNYKEETDLKATLKRY---FPDGIDVY  107 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~i~~~---~~~~~d~v  107 (223)
                      +++||.   |++|...++.....|++|+.++++.++.+.+.+.++...    ..|-.+.+++.+.+...   ..+++|++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~v   81 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVL   81 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEE
Confidence            468888   899999998888889999999999888776653443111    23444432333333322   13479999


Q ss_pred             EcCCCh
Q 043295          108 FDNVGG  113 (223)
Q Consensus       108 id~~g~  113 (223)
                      +.+.|.
T Consensus        82 i~~ag~   87 (260)
T PRK08267         82 FNNAGI   87 (260)
T ss_pred             EECCCC
Confidence            998873

>PRK06194 hypothetical protein; Provisional

Probab=96.12  E-value=0.036  Score=43.01  Aligned_cols=78  Identities=13%  Similarity=0.216  Sum_probs=48.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhC--CCCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYF--PDGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~--~~~~  104 (223)
                      .++++||+   |++|..+++.....|++|+.++++.++.+...+++   +...   ..|..+.+++.+.+....  .+++
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i   84 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV   84 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            35789999   79999999888888999999998876655443233   3221   123333212222222221  1368


Q ss_pred             cEEEcCCCh
Q 043295          105 DVYFDNVGG  113 (223)
Q Consensus       105 d~vid~~g~  113 (223)
                      |+++.+.|.
T Consensus        85 d~vi~~Ag~   93 (287)
T PRK06194         85 HLLFNNAGV   93 (287)
T ss_pred             CEEEECCCC
Confidence            999998873

>PLN02244 tocopherol O-methyltransferase

Probab=96.12  E-value=0.034  Score=44.51  Aligned_cols=96  Identities=13%  Similarity=0.114  Sum_probs=62.4

Q ss_pred             CCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           36 KGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        36 ~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      ++++||=. .|.|..+..+++..|++|++++.++...+.+++.   .|...-+..... +..+ + .+..+.||+|+..-
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~-D~~~-~-~~~~~~FD~V~s~~  194 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVA-DALN-Q-PFEDGQFDLVWSME  194 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEc-Cccc-C-CCCCCCccEEEECC
Confidence            56788777 8899999999998899999999999877766521   233111111111 1100 0 11123699997533


Q ss_pred             C-----h--HHHHHHHHhhccCcEEEEEcc
Q 043295          112 G-----G--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       112 g-----~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .     .  ..+..+.+.|++||+++....
T Consensus       195 ~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        195 SGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             chhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            2     1  357788899999999988754

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.11  E-value=0.15  Score=37.93  Aligned_cols=94  Identities=19%  Similarity=0.146  Sum_probs=61.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      +++++||-. +|.|..+..+++..+.  +|++++.+++-.+.+++   ++|.+.+--...  +..+...  ..+.||+|+
T Consensus        76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~--d~~~~~~--~~~~fD~Ii  151 (215)
T TIGR00080        76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVG--DGTQGWE--PLAPYDRIY  151 (215)
T ss_pred             CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEEC--CcccCCc--ccCCCCEEE
Confidence            889999988 8999999999998754  79999999887766653   334433211111  1111110  112699887


Q ss_pred             cCCC-hHHHHHHHHhhccCcEEEEE
Q 043295          109 DNVG-GEMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       109 d~~g-~~~~~~~~~~l~~~G~~v~~  132 (223)
                      -... ........+.|++||+++..
T Consensus       152 ~~~~~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       152 VTAAGPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             EcCCcccccHHHHHhcCcCcEEEEE
Confidence            4433 34456678899999998864

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.09  E-value=0.043  Score=41.57  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=48.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC---eeeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD---DAFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .+++++|+   |++|...++.....|++|+.+++++++.+.+.+.+   +..   ...|..+..+....+.+...  +++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   84 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI   84 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            46788999   89999999888888999999998876654443222   211   12333332122222222211  269


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |++|.+.|
T Consensus        85 d~vi~~ag   92 (250)
T PRK07774         85 DYLVNNAA   92 (250)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=96.07  E-value=0.049  Score=41.51  Aligned_cols=77  Identities=16%  Similarity=0.286  Sum_probs=50.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe---eeecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD---AFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .+++++|.   |++|...++.....|++|+.++++.++.+.+.++++...   ..|-.+.++....+.+...  +++|++
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   84 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDIL   84 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            45789999   899999998888889999999999887766654444211   1233332122222222211  368999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +.+.|
T Consensus        85 i~~ag   89 (257)
T PRK07067         85 FNNAA   89 (257)
T ss_pred             EECCC
Confidence            98876

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.07  E-value=0.043  Score=41.54  Aligned_cols=76  Identities=18%  Similarity=0.280  Sum_probs=47.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH--HHHHHHhhCCC-e--eeecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK--VAILKEKLGFD-D--AFNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~--~~~~~~~~g~~-~--~~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      .+++++|.   |++|...++.....|++|+.++++...  .+.+. +++.. .  ..|..+.+++...+.+...  +++|
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   82 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVE-ALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID   82 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHH-hcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            47889999   799999998888889999999976521  22333 34432 1  1333333233333333222  3699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++.+.|
T Consensus        83 ~li~~ag   89 (248)
T TIGR01832        83 ILVNNAG   89 (248)
T ss_pred             EEEECCC
Confidence            9998876

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.07  E-value=0.064  Score=39.77  Aligned_cols=100  Identities=19%  Similarity=0.155  Sum_probs=62.8

Q ss_pred             HHHHHh-hCCCEEEEE-CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHH---hhCCCee-eecCCcccHHHHHHHhC
Q 043295           29 GFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKE---KLGFDDA-FNYKEETDLKATLKRYF  100 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~---~~g~~~~-~~~~~~~~~~~~i~~~~  100 (223)
                      ++.... ++|++||-. ++.|-.++-+++..|.  +|+++...+.=.+.+++   .+|.+.+ +...+.  . ....  .
T Consensus        64 ~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg--~-~g~~--~  138 (209)
T PF01135_consen   64 MLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG--S-EGWP--E  138 (209)
T ss_dssp             HHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G--G-GTTG--G
T ss_pred             HHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch--h-hccc--c
Confidence            344444 999999999 8899999999999885  69999988764444442   4565433 222221  1 0111  1


Q ss_pred             CCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEc
Q 043295          101 PDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       101 ~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g  133 (223)
                      .++||.|+-+.+- ..-...++.|++||++|..-
T Consensus       139 ~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi  172 (209)
T PF01135_consen  139 EAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPI  172 (209)
T ss_dssp             G-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEE
T ss_pred             CCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEE
Confidence            1279999877764 44567888999999998743

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK08643 acetoin reductase; Validated

Probab=96.05  E-value=0.038  Score=42.09  Aligned_cols=76  Identities=16%  Similarity=0.216  Sum_probs=48.3

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhCC--CCcc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      +++++|.   |++|...++.....|++|+.+++++++.+.+.+++   +...   ..|..+.+...+.+.+...  +++|
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   81 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN   81 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            5678888   89999999888888999999998887665544232   2211   1233333122222322221  3689


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++.+.|
T Consensus        82 ~vi~~ag   88 (256)
T PRK08643         82 VVVNNAG   88 (256)
T ss_pred             EEEECCC
Confidence            9999886

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.05  E-value=0.025  Score=47.60  Aligned_cols=69  Identities=14%  Similarity=0.096  Sum_probs=50.5

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      .++++|+|+  |..|++++++++..|++|++.+.++.+.+.++ ++|+..+ ...   ...+.+.     .+|+|+.+.|
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~-~~g~~~~-~~~---~~~~~l~-----~~D~VV~SpG   79 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHA-ERGVATV-STS---DAVQQIA-----DYALVVTSPG   79 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-hCCCEEE-cCc---chHhHhh-----cCCEEEECCC
Confidence            567899999  99999999999999999999997766666666 6776332 221   1122221     3799999888


Q ss_pred             h
Q 043295          113 G  113 (223)
Q Consensus       113 ~  113 (223)
                      -
T Consensus        80 i   80 (488)
T PRK03369         80 F   80 (488)
T ss_pred             C
Confidence            4

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.046  Score=42.16  Aligned_cols=75  Identities=20%  Similarity=0.327  Sum_probs=49.4

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe---eeecCCcccHHHHHHHhCC--CCccEEEc
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD---AFNYKEETDLKATLKRYFP--DGIDVYFD  109 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~i~~~~~--~~~d~vid  109 (223)
                      +++||+   |++|...++.....|++|+++++++++.+.+++..+...   ..|..+.+.+.+.+.+...  +++|++|.
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   82 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS   82 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            578888   899999888888889999999999887776663333211   1333333123333333221  36899999


Q ss_pred             CCC
Q 043295          110 NVG  112 (223)
Q Consensus       110 ~~g  112 (223)
                      +.|
T Consensus        83 ~ag   85 (276)
T PRK06482         83 NAG   85 (276)
T ss_pred             CCC
Confidence            886

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=96.04  E-value=0.13  Score=39.62  Aligned_cols=102  Identities=17%  Similarity=0.222  Sum_probs=65.8

Q ss_pred             HHHHHh-hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCC-CCcc
Q 043295           29 GFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFP-DGID  105 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-~~~d  105 (223)
                      .+.... .++.+||=. .+.|..+..+++..+++|++++.++...+.+++.......+..... +..   ....+ +.||
T Consensus        44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~-D~~---~~~~~~~~FD  119 (263)
T PTZ00098         44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEAN-DIL---KKDFPENTFD  119 (263)
T ss_pred             HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEEC-Ccc---cCCCCCCCeE
Confidence            333444 788888877 7788888888887889999999999888888733322111111111 111   11112 3699


Q ss_pred             EEEc--CC---C--h--HHHHHHHHhhccCcEEEEEcc
Q 043295          106 VYFD--NV---G--G--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       106 ~vid--~~---g--~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      +|+.  +.   +  .  ..+..+.+.|+|||.++....
T Consensus       120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9875  21   2  1  257788899999999998654

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.04  E-value=0.047  Score=41.67  Aligned_cols=78  Identities=23%  Similarity=0.334  Sum_probs=50.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC---eeeecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD---DAFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      -+++++||.   |++|...++.....|++|+.++++.++.+.+.+.+   +..   ...|..+.+.+.+.+.+...  ++
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~   89 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH   89 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            467899999   89999999888888999999999887766554222   221   11233333123222222211  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++.+.|
T Consensus        90 id~vi~~ag   98 (259)
T PRK08213         90 VDILVNNAG   98 (259)
T ss_pred             CCEEEECCC
Confidence            899999876

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.04  E-value=0.043  Score=41.90  Aligned_cols=74  Identities=28%  Similarity=0.312  Sum_probs=47.6

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee--eecCCcccHHHHHHHhCC--CCccEEE
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA--FNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~--~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      +++|+   +++|.+.++.....|++|+.+++++++.+.+.+++   +....  .|..+.++..+.+.+...  +++|+++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li   81 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALV   81 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            57888   88999999888888999999999887765554333   21112  233333123333333222  3699999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        82 ~naG   85 (259)
T PRK08340         82 WNAG   85 (259)
T ss_pred             ECCC
Confidence            9877

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.02  E-value=0.057  Score=41.81  Aligned_cols=102  Identities=16%  Similarity=0.123  Sum_probs=62.6

Q ss_pred             CCCEEEEE-C----chHHHHHHHHHHcCCeEEEEecCHH---HHHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS-G----AYGHLVGQYAKLGGCYVVGSAGTNE---KVAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~-g----~vG~~a~qla~~~g~~v~~~~~~~~---~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .+++++|+ +    ++|.+.++.....|++|+.++++.+   +.+.+.++++....  .|-.+.++....+.+...  +.
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g~   83 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLGK   83 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            46788998 3    6999999888889999999888742   33434324553322  344443233333333322  36


Q ss_pred             ccEEEcCCCh---------------HHH---------------HHHHHhhccCcEEEEEccccc
Q 043295          104 IDVYFDNVGG---------------EML---------------EAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       104 ~d~vid~~g~---------------~~~---------------~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      +|+++++.|.               +.+               +..+..+..+|+++.++...+
T Consensus        84 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~  147 (274)
T PRK08415         84 IDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGG  147 (274)
T ss_pred             CCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCC
Confidence            9999998872               011               234456667799988876543

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.02  E-value=0.052  Score=41.12  Aligned_cols=77  Identities=18%  Similarity=0.188  Sum_probs=48.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh--CCC-ee--eecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL--GFD-DA--FNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~--g~~-~~--~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      ++++++|.   |++|...++.....|++|+.++++.++.+...+.+  +.. ..  .|-.+.....+.+.+...  +++|
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   83 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLD   83 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            46789999   79999888877778999999999887655444233  221 11  233332123232322221  3699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++.+.|
T Consensus        84 ~vi~~ag   90 (252)
T PRK06138         84 VLVNNAG   90 (252)
T ss_pred             EEEECCC
Confidence            9999887

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.056  Score=41.72  Aligned_cols=76  Identities=21%  Similarity=0.272  Sum_probs=49.4

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-ee--eecCCcccHHHHHHHhCC--CCccEEE
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DA--FNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~--~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      +++++|+   |++|..+++.+...|++|+.++++.++.+.+.+.++.. ..  .|..+..++.+.+.+...  +++|+++
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi   82 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVV   82 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4678998   89999988888888999999999988776665333321 11  233332123222332211  3689999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      .+.|
T Consensus        83 ~~ag   86 (275)
T PRK08263         83 NNAG   86 (275)
T ss_pred             ECCC
Confidence            9987

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.01  E-value=0.058  Score=41.66  Aligned_cols=77  Identities=14%  Similarity=0.183  Sum_probs=47.7

Q ss_pred             CCCEEEEE--C---chHHHHHHHHHHcCCeEEEEecCHHH---HHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS--G---AYGHLVGQYAKLGGCYVVGSAGTNEK---VAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~--g---~vG~~a~qla~~~g~~v~~~~~~~~~---~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      +++++||+  +   ++|.+.++.....|++|+.+++++..   .+.+.+++|....  .|-.+.++....+.+...  +.
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   85 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGK   85 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            46788999  3   79999999888899999998876532   2233223453222  244333223333333222  37


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        86 iD~lVnnAG   94 (271)
T PRK06505         86 LDFVVHAIG   94 (271)
T ss_pred             CCEEEECCc
Confidence            999999887

>PRK07904 short chain dehydrogenase; Provisional

Probab=95.99  E-value=0.058  Score=41.16  Aligned_cols=77  Identities=13%  Similarity=0.173  Sum_probs=46.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHc-CCeEEEEecCHHH-HHHHHHhh---CCC--ee--eecCCcccHHHHHHHhCC-C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLG-GCYVVGSAGTNEK-VAILKEKL---GFD--DA--FNYKEETDLKATLKRYFP-D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~-g~~v~~~~~~~~~-~~~~~~~~---g~~--~~--~~~~~~~~~~~~i~~~~~-~  102 (223)
                      .+++++|+   |++|...++-+... |++|+.+++++++ .+.+.+++   +..  .+  .|..+.++..+.+.+... +
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g   86 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG   86 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence            46789999   89999988776666 5899999988765 44332122   321  12  343333133333333322 4


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++.+.|
T Consensus        87 ~id~li~~ag   96 (253)
T PRK07904         87 DVDVAIVAFG   96 (253)
T ss_pred             CCCEEEEeee
Confidence            7998887775

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=95.99  E-value=0.065  Score=40.65  Aligned_cols=74  Identities=22%  Similarity=0.363  Sum_probs=48.5

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEEEcC
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVYFDN  110 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~vid~  110 (223)
                      +++|.   |++|...++.+...|++|+.+++++++.+.+.+.++....   .|-.+.+++.+.+.....  +++|+++.+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~   81 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN   81 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            57888   8899999988888899999999998887766534443211   233332123333332222  269999988


Q ss_pred             CC
Q 043295          111 VG  112 (223)
Q Consensus       111 ~g  112 (223)
                      .|
T Consensus        82 ag   83 (248)
T PRK10538         82 AG   83 (248)
T ss_pred             CC
Confidence            76

>PRK06128 oxidoreductase; Provisional

Probab=95.99  E-value=0.12  Score=40.42  Aligned_cols=77  Identities=17%  Similarity=0.249  Sum_probs=45.9

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH--HHH----HHHHhhCCCee---eecCCcccHHHHHHHhCC-
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE--KVA----ILKEKLGFDDA---FNYKEETDLKATLKRYFP-  101 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~--~~~----~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-  101 (223)
                      -.++++||.   |++|.++++.....|++|+.+.++.+  +.+    .++ ..|....   .|-.+.+...+.+.+... 
T Consensus        53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  131 (300)
T PRK06128         53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQ-AEGRKAVALPGDLKDEAFCRQLVERAVKE  131 (300)
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHH-HcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence            346789999   89999999888889999988775432  222    222 3343211   233332122222322221 


Q ss_pred             -CCccEEEcCCC
Q 043295          102 -DGIDVYFDNVG  112 (223)
Q Consensus       102 -~~~d~vid~~g  112 (223)
                       +++|+++.+.|
T Consensus       132 ~g~iD~lV~nAg  143 (300)
T PRK06128        132 LGGLDILVNIAG  143 (300)
T ss_pred             hCCCCEEEECCc
Confidence             36999998886

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.98  E-value=0.045  Score=41.10  Aligned_cols=77  Identities=12%  Similarity=0.146  Sum_probs=49.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCe-e--eecCCcccHH---HHHHHhCCCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDD-A--FNYKEETDLK---ATLKRYFPDG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~-~--~~~~~~~~~~---~~i~~~~~~~  103 (223)
                      ++++++|.   +++|.+.+......|++|+.+++++++++.+.++   .+... .  .|-.+.++..   +.+.+..+++
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA   83 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            46788999   7899998888888999999999988876654322   24321 1  2333321222   2333333326


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++.+.|
T Consensus        84 iD~li~nag   92 (227)
T PRK08862         84 PDVLVNNWT   92 (227)
T ss_pred             CCEEEECCc
Confidence            999999886

>PRK07402 precorrin-6B methylase; Provisional

Probab=95.96  E-value=0.41  Score=34.98  Aligned_cols=97  Identities=15%  Similarity=0.176  Sum_probs=61.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .++++||=. +|.|..+..+++.. +.+|++++.+++..+.+++   +++...+-... . +..+.+.......-++.++
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~-~-d~~~~~~~~~~~~d~v~~~  116 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIE-G-SAPECLAQLAPAPDRVCIE  116 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE-C-chHHHHhhCCCCCCEEEEE
Confidence            677887777 88899888888765 5699999999988777663   34543321111 1 2222222222222234454


Q ss_pred             CCCh--HHHHHHHHhhccCcEEEEEc
Q 043295          110 NVGG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       110 ~~g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ....  ..+..+.+.|+++|+++...
T Consensus       117 ~~~~~~~~l~~~~~~LkpgG~li~~~  142 (196)
T PRK07402        117 GGRPIKEILQAVWQYLKPGGRLVATA  142 (196)
T ss_pred             CCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence            3322  46788889999999998775

>PRK08589 short chain dehydrogenase; Validated

Probab=95.96  E-value=0.049  Score=42.03  Aligned_cols=76  Identities=20%  Similarity=0.279  Sum_probs=47.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC---eeeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD---DAFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      +++++||.   +++|.+.++.....|++|+.++++ ++.+.+.+++   +..   ...|..+.++....+.+...  +++
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   83 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV   83 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            46789999   799999998888889999999988 4433322133   321   12344433123333333221  368


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        84 d~li~~Ag   91 (272)
T PRK08589         84 DVLFNNAG   91 (272)
T ss_pred             CEEEECCC
Confidence            99998876

>PRK06483 dihydromonapterin reductase; Provisional

Probab=95.95  E-value=0.06  Score=40.45  Aligned_cols=75  Identities=15%  Similarity=0.161  Sum_probs=47.7

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHH-HHHHHhhCCCe-eeecCCcccHHHHHHHhCC--CCccEEEc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKV-AILKEKLGFDD-AFNYKEETDLKATLKRYFP--DGIDVYFD  109 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~-~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~--~~~d~vid  109 (223)
                      ++++||.   +++|...++.....|++|+.+++++.+. +.++ ..+... ..|..+.++....+.+...  +++|+++.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~   80 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLR-QAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIH   80 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHH-HcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEE
Confidence            4678999   7899999988888999999999876543 3333 445321 1233332133333333322  25899999


Q ss_pred             CCC
Q 043295          110 NVG  112 (223)
Q Consensus       110 ~~g  112 (223)
                      +.|
T Consensus        81 ~ag   83 (236)
T PRK06483         81 NAS   83 (236)
T ss_pred             CCc
Confidence            886

>PRK06181 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.047  Score=41.73  Aligned_cols=77  Identities=19%  Similarity=0.318  Sum_probs=48.3

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhCC--CCcc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      +.++||.   |++|..+++.+...|++|+.+++++.+.+.+.+.+   +...   ..|..+.+.+...+.+...  +++|
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   80 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID   80 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            3578888   89999999888888999999999877655443222   3211   1233332123333333221  2689


Q ss_pred             EEEcCCCh
Q 043295          106 VYFDNVGG  113 (223)
Q Consensus       106 ~vid~~g~  113 (223)
                      +++.+.|.
T Consensus        81 ~vi~~ag~   88 (263)
T PRK06181         81 ILVNNAGI   88 (263)
T ss_pred             EEEECCCc
Confidence            99998863

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.073  Score=40.74  Aligned_cols=78  Identities=23%  Similarity=0.308  Sum_probs=49.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh--CCC-ee--eecCCcccHHHHHHHhC-CCCccE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL--GFD-DA--FNYKEETDLKATLKRYF-PDGIDV  106 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~--g~~-~~--~~~~~~~~~~~~i~~~~-~~~~d~  106 (223)
                      ++.+++|+   |++|...++.+...|++|+++++++++.+.+.+++  +.. ..  .|-.+.++..+...... .+++|+
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~   83 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINV   83 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence            46789999   88999988888888999999999988776665343  111 11  23333212222111111 236899


Q ss_pred             EEcCCCh
Q 043295          107 YFDNVGG  113 (223)
Q Consensus       107 vid~~g~  113 (223)
                      ++.+.|.
T Consensus        84 lv~~ag~   90 (263)
T PRK09072         84 LINNAGV   90 (263)
T ss_pred             EEECCCC
Confidence            9998773

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=95.94  E-value=0.13  Score=38.61  Aligned_cols=100  Identities=8%  Similarity=0.010  Sum_probs=63.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeec-------CCc--ccHHHHHHHhC----
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNY-------KEE--TDLKATLKRYF----  100 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~--~~~~~~i~~~~----  100 (223)
                      .++.+|||- .|-|.-+.-+|. .|.+|++++-|+.-.+...++.+....+..       ...  +-+...+.+..    
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~-~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~  120 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLS-KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN  120 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHh-CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence            567899999 888988888876 599999999999888776534433211000       000  00000111111    


Q ss_pred             -CCCccEEEcCCC-----h----HHHHHHHHhhccCcEEEEEccc
Q 043295          101 -PDGIDVYFDNVG-----G----EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       101 -~~~~d~vid~~g-----~----~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                       .+.+|.|+|..-     .    .+......+|+++|+++.+...
T Consensus       121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence             126999998552     1    2567788899999999888753

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.94  E-value=0.05  Score=41.31  Aligned_cols=77  Identities=16%  Similarity=0.259  Sum_probs=49.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC-ee--eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD-DA--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      ++++++|.   |++|...++.....|++|+.++++.++.+.+.+++   +.. ..  .|..+..+..+.+.+...  +.+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   86 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRL   86 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46789999   89999999988889999999999877665544232   221 11  233332122222222221  258


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        87 d~li~~ag   94 (252)
T PRK07035         87 DILVNNAA   94 (252)
T ss_pred             CEEEECCC
Confidence            99998886

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.93  E-value=0.12  Score=39.03  Aligned_cols=95  Identities=20%  Similarity=0.249  Sum_probs=66.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      .||++|+=- .|.|.+++-+|+..|-  +|+.....++..+.+++.   +|....+..... +..+.+   .+..+|.++
T Consensus        93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~-Dv~~~~---~~~~vDav~  168 (256)
T COG2519          93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLG-DVREGI---DEEDVDAVF  168 (256)
T ss_pred             CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEec-cccccc---cccccCEEE
Confidence            899998888 7889999999998875  999999888877766643   344332222221 222211   112688764


Q ss_pred             -cCCCh-HHHHHHHHhhccCcEEEEEc
Q 043295          109 -DNVGG-EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       109 -d~~g~-~~~~~~~~~l~~~G~~v~~g  133 (223)
                       |..-. ..++.+.+.|+++|.++.+.
T Consensus       169 LDmp~PW~~le~~~~~Lkpgg~~~~y~  195 (256)
T COG2519         169 LDLPDPWNVLEHVSDALKPGGVVVVYS  195 (256)
T ss_pred             EcCCChHHHHHHHHHHhCCCcEEEEEc
Confidence             65554 68999999999999999885

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.93  E-value=0.05  Score=42.74  Aligned_cols=78  Identities=18%  Similarity=0.194  Sum_probs=49.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCCe----eeecCCcccHHHHHHHhCC--
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFDD----AFNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~~----~~~~~~~~~~~~~i~~~~~--  101 (223)
                      ..+++++|.   |++|..+++.....|++|+.++++.++.+.+.+++    +...    ..|-.+.++....+.+...  
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~   93 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY   93 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence            467899999   89999999888888999999999877654432222    1111    1233333123222333322  


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|++|.+.|
T Consensus        94 ~~iD~li~nAg  104 (306)
T PRK06197         94 PRIDLLINNAG  104 (306)
T ss_pred             CCCCEEEECCc
Confidence            26999999886

>PRK06198 short chain dehydrogenase; Provisional

Probab=95.92  E-value=0.049  Score=41.56  Aligned_cols=78  Identities=15%  Similarity=0.167  Sum_probs=48.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHH---hhCCCe---eeecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKE---KLGFDD---AFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~---~~g~~~---~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      ++++++|.   |++|..+++.+...|++ |+.++++.++.....+   ..+...   ..|..+.+.+.+.+.....  ++
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFGR   84 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            46788998   89999999888889998 9999988765542221   233321   1344433122222222211  36


Q ss_pred             ccEEEcCCCh
Q 043295          104 IDVYFDNVGG  113 (223)
Q Consensus       104 ~d~vid~~g~  113 (223)
                      +|+++.+.|.
T Consensus        85 id~li~~ag~   94 (260)
T PRK06198         85 LDALVNAAGL   94 (260)
T ss_pred             CCEEEECCCc
Confidence            9999999873

>PRK06914 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.055  Score=41.83  Aligned_cols=76  Identities=17%  Similarity=0.314  Sum_probs=48.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCC---e--eeecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFD---D--AFNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~--~~~~~~~~~~~~~i~~~~~--~  102 (223)
                      .++++||+   |++|...+......|++|+++++++++.+.+.+.   .+..   .  ..|..+.+++.. +.+...  +
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~   80 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIG   80 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcC
Confidence            35678998   8999999988888899999999888766554322   2211   1  124444323333 433322  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++.+.|
T Consensus        81 ~id~vv~~ag   90 (280)
T PRK06914         81 RIDLLVNNAG   90 (280)
T ss_pred             CeeEEEECCc
Confidence            6899999876

>PRK05875 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.069  Score=41.16  Aligned_cols=77  Identities=13%  Similarity=0.112  Sum_probs=49.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhC-----CC-ee--eecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG-----FD-DA--FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g-----~~-~~--~~~~~~~~~~~~i~~~~~--~  102 (223)
                      +++++||.   |++|..+++.+...|++|+.+++++++.+...+++.     .. .+  .|-.+.+++...+.+...  +
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG   85 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46789999   899999999888899999999988776544432321     11 11  233332123333333322  2


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|++|.+.|
T Consensus        86 ~~d~li~~ag   95 (276)
T PRK05875         86 RLHGVVHCAG   95 (276)
T ss_pred             CCCEEEECCC
Confidence            6899998886

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.89  E-value=0.074  Score=40.41  Aligned_cols=77  Identities=25%  Similarity=0.326  Sum_probs=48.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC---eeeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD---DAFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      ++++++|+   |++|...++.....|++|+.+++++++.+....++   +..   ...|..+.+++.+.+.....  +++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV   82 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46789999   89999888887788999999999887765443232   321   11233333123232332221  268


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |++|.+.|
T Consensus        83 d~vi~~a~   90 (258)
T PRK12429         83 DILVNNAG   90 (258)
T ss_pred             CEEEECCC
Confidence            99998886

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.88  E-value=0.069  Score=40.15  Aligned_cols=78  Identities=19%  Similarity=0.318  Sum_probs=49.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCee---eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDA---FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      ++.+++|+   |++|...++.....|++|+.+++++.+.+.+.+   ..+....   .|..+...+.+.+.+...  +++
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGAL   83 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            35689999   889999988888889999999998877554432   2233221   244333123333332211  258


Q ss_pred             cEEEcCCCh
Q 043295          105 DVYFDNVGG  113 (223)
Q Consensus       105 d~vid~~g~  113 (223)
                      |.++.+.|.
T Consensus        84 d~vi~~ag~   92 (246)
T PRK05653         84 DILVNNAGI   92 (246)
T ss_pred             CEEEECCCc
Confidence            999998853

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.88  E-value=0.053  Score=41.21  Aligned_cols=77  Identities=17%  Similarity=0.187  Sum_probs=48.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCC-ee--eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFD-DA--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      ++++++|.   |++|...++.....|++|+.+++++++.+.+.+.   .+.. ..  .|..+.+++.+.+.+...  +++
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   85 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRL   85 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            46789999   8999999988888899999999988765443322   2321 11  233332122222222211  368


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        86 d~li~~ag   93 (253)
T PRK06172         86 DYAFNNAG   93 (253)
T ss_pred             CEEEECCC
Confidence            99998876

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=95.87  E-value=0.079  Score=40.41  Aligned_cols=76  Identities=24%  Similarity=0.257  Sum_probs=47.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      ++++++|+   |++|.+.++.....|++|+.+++++...+... ++   +.+.   ..|..+.++....+.+...  +++
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAA-ELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHH-HHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            46789999   89999999888889999999998754323222 32   3221   2344433123333333222  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        86 d~lv~nAg   93 (260)
T PRK12823         86 DVLINNVG   93 (260)
T ss_pred             eEEEECCc
Confidence            99999886

>PRK08251 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.059  Score=40.76  Aligned_cols=76  Identities=17%  Similarity=0.305  Sum_probs=48.3

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh-----CCC-e--eeecCCcccHHHHHHHhCC--CC
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL-----GFD-D--AFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~-----g~~-~--~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      +++++|+   |++|...++.....|++|+.+++++++.+.+...+     +.. .  ..|..+.+++.+.+.+...  ++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4678898   89998888777778999999999887766554222     211 1  1344443233333333322  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++.+.|
T Consensus        82 id~vi~~ag   90 (248)
T PRK08251         82 LDRVIVNAG   90 (248)
T ss_pred             CCEEEECCC
Confidence            999999886

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.87  E-value=0.054  Score=40.77  Aligned_cols=77  Identities=19%  Similarity=0.314  Sum_probs=47.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .+.+++|.   |++|..++..+...|++|+.+++++++.+...+++   +...   ..|..+..++.+.+++...  +++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI   85 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence            35688888   78999888877788999999999877655443222   2211   1233332233333333322  268


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |++|.+.|
T Consensus        86 d~vi~~ag   93 (239)
T PRK07666         86 DILINNAG   93 (239)
T ss_pred             cEEEEcCc
Confidence            99998876

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=95.87  E-value=0.34  Score=37.65  Aligned_cols=94  Identities=16%  Similarity=0.103  Sum_probs=65.8

Q ss_pred             CEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCee-e-ecCCc---ccHHHHHHHhCCCCccEEE-c
Q 043295           38 EKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDA-F-NYKEE---TDLKATLKRYFPDGIDVYF-D  109 (223)
Q Consensus        38 ~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~-~-~~~~~---~~~~~~i~~~~~~~~d~vi-d  109 (223)
                      ++|||. ||-|..+-.++|.... +++++.-.++=.+.+++.++.... . |.+-.   ++-.+.+++... ++|+|| |
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~D  156 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIVD  156 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC-cCCEEEEc
Confidence            699999 9999999999998866 899999888888888855543221 1 22211   133444554433 799885 4


Q ss_pred             CCCh----------HHHHHHHHhhccCcEEEEE
Q 043295          110 NVGG----------EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       110 ~~g~----------~~~~~~~~~l~~~G~~v~~  132 (223)
                      +...          +-++.+.++|+++|.++.-
T Consensus       157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            4432          2577889999999999876

>PRK01581 speE spermidine synthase; Validated

Probab=95.87  E-value=0.28  Score=39.43  Aligned_cols=95  Identities=15%  Similarity=0.093  Sum_probs=62.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhC-C----------CeeeecCCcccHHHHHHHhCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLG-F----------DDAFNYKEETDLKATLKRYFP  101 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g-~----------~~~~~~~~~~~~~~~i~~~~~  101 (223)
                      ...++|||. ||.|..+..+++..+ .+|+++..+++-.+.++ ++. .          ..+ ...-. +..+.++. .+
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr-~~~~L~~~~~~~~~DpRV-~vvi~-Da~~fL~~-~~  224 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMAR-NVPELVSLNKSAFFDNRV-NVHVC-DAKEFLSS-PS  224 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH-hccccchhccccCCCCce-EEEEC-cHHHHHHh-cC
Confidence            556799999 899998888888655 48999999988888888 421 0          111 11111 33344433 33


Q ss_pred             CCccEEE-cCC---C--------hHHHHHHHHhhccCcEEEEEc
Q 043295          102 DGIDVYF-DNV---G--------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       102 ~~~d~vi-d~~---g--------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +.||+|| |..   +        .+.+..+.+.|+++|.++.-.
T Consensus       225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            4799886 432   1        124667888999999987754

>PRK07074 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.081  Score=40.29  Aligned_cols=76  Identities=21%  Similarity=0.266  Sum_probs=48.5

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC--e--eeecCCcccHHHHHHHhCC--CCccEE
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD--D--AFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~--~--~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      +++++|+   |++|...+......|++|+.++++..+.+.+.+.+...  .  ..|-.+.+.+...+.+...  +++|++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVL   81 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4678998   78999888877788999999999887766554233211  1  1333333122233333221  268999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +.+.|
T Consensus        82 i~~ag   86 (257)
T PRK07074         82 VANAG   86 (257)
T ss_pred             EECCC
Confidence            99887

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.84  E-value=0.06  Score=41.02  Aligned_cols=76  Identities=16%  Similarity=0.161  Sum_probs=46.4

Q ss_pred             CCCEEEEE--C---chHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee----eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS--G---AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA----FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~--g---~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .+++++|.  +   ++|.+.++.....|++|+.++++++..+.++ ++....+    .|-.+.++..+.+.+...  +.+
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   84 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQ-KLVDEEDLLVECDVASDESIERAFATIKERVGKI   84 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHH-hhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence            46789999  3   6999999888889999999988754333344 3322111    233332122222222221  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        85 D~lv~nAg   92 (252)
T PRK06079         85 DGIVHAIA   92 (252)
T ss_pred             CEEEEccc
Confidence            99998876

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.83  E-value=0.03  Score=43.01  Aligned_cols=74  Identities=18%  Similarity=0.341  Sum_probs=48.0

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe-eeecCCcccHHHHHHHhCC--CCccEEEcC
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD-AFNYKEETDLKATLKRYFP--DGIDVYFDN  110 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~--~~~d~vid~  110 (223)
                      +++++|.   |++|...++.....|++|++++++.++.+...   +... ..|..+.+++.+.+.....  +.+|++|.+
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~---~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~   80 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIP---GVELLELDVTDDASVQAAVDEVIARAGRIDVLVNN   80 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccccC---CCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence            4678888   89999988888888999999998876543221   2222 2344443233333433322  368999999


Q ss_pred             CCh
Q 043295          111 VGG  113 (223)
Q Consensus       111 ~g~  113 (223)
                      .|.
T Consensus        81 ag~   83 (270)
T PRK06179         81 AGV   83 (270)
T ss_pred             CCC
Confidence            873

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=95.81  E-value=0.24  Score=40.99  Aligned_cols=98  Identities=18%  Similarity=0.183  Sum_probs=62.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHh-CCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRY-FPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~-~~~~~d~vi  108 (223)
                      ++|++||=. .+.|..+.++++..+ .+|++++.++++++.+++   .+|....+...+. +.. ..... ..+.||.|+
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~-d~~-~~~~~~~~~~fD~Vl  314 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDG-DGR-GPSQWAENEQFDRIL  314 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecc-ccc-cccccccccccCEEE
Confidence            788888877 778888888888775 699999999998876653   3465411100111 100 00001 112699886


Q ss_pred             -c--CCCh--------------------------HHHHHHHHhhccCcEEEEEcc
Q 043295          109 -D--NVGG--------------------------EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 -d--~~g~--------------------------~~~~~~~~~l~~~G~~v~~g~  134 (223)
                       |  |+|.                          ..+..++++|++||+++....
T Consensus       315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc  369 (426)
T TIGR00563       315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC  369 (426)
T ss_pred             EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence             3  4541                          245567889999999997654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.78  E-value=0.068  Score=38.15  Aligned_cols=100  Identities=19%  Similarity=0.169  Sum_probs=63.5

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeec-CC---------------cccHHHHHH
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNY-KE---------------ETDLKATLK   97 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~-~~---------------~~~~~~~i~   97 (223)
                      +..+|+|.  |.+|..|+++++.+|++|+..+..+++.+... .++...+... .+               .......+.
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   97 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLE-SLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA   97 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHH-HTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhh-cccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence            44678888  99999999999999999999999998888887 6766433221 00               001222222


Q ss_pred             HhCCCCccEEEc-CCC-h---H--HHHHHHHhhccCcEEEEEccccc
Q 043295           98 RYFPDGIDVYFD-NVG-G---E--MLEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus        98 ~~~~~~~d~vid-~~g-~---~--~~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      +... .+|++|. +.- +   +  ..+..+..|+++..++.++.-.+
T Consensus        98 ~~i~-~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~g  143 (168)
T PF01262_consen   98 EFIA-PADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQG  143 (168)
T ss_dssp             HHHH-H-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGGT
T ss_pred             HHHh-hCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecCC
Confidence            2111 2788874 321 2   1  24567888999999999876544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.78  E-value=0.12  Score=40.70  Aligned_cols=87  Identities=18%  Similarity=0.227  Sum_probs=57.9

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .+|.|.  |.+|...++.++..|.  +|++.++++++.+.++ +.|......   . +..+.+     ...|+|+.|+..
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-~~g~~~~~~---~-~~~~~~-----~~aDvViiavp~   76 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-ELGLGDRVT---T-SAAEAV-----KGADLVILCVPV   76 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-hCCCCceec---C-CHHHHh-----cCCCEEEECCCH
Confidence            578888  9999999888888885  8999999998888887 677522111   1 222222     248899999886


Q ss_pred             HH----HHHHHHhhccCcEEEEEcc
Q 043295          114 EM----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       114 ~~----~~~~~~~l~~~G~~v~~g~  134 (223)
                      ..    +......++++..++.+|.
T Consensus        77 ~~~~~v~~~l~~~l~~~~iv~dvgs  101 (307)
T PRK07502         77 GASGAVAAEIAPHLKPGAIVTDVGS  101 (307)
T ss_pred             HHHHHHHHHHHhhCCCCCEEEeCcc
Confidence            43    2333345566666666654

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.77  E-value=0.078  Score=40.93  Aligned_cols=77  Identities=16%  Similarity=0.268  Sum_probs=49.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      ++++++|.   |++|.+.++.....|++|+.+++++++.+.+.+++   +...   ..|..+..+....+.+...  +++
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   88 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPC   88 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            56788999   89999999988889999999998877655443232   3211   1233332122222222221  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        89 d~li~~ag   96 (278)
T PRK08277         89 DILINGAG   96 (278)
T ss_pred             CEEEECCC
Confidence            99999877

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.77  E-value=0.067  Score=40.30  Aligned_cols=77  Identities=14%  Similarity=0.239  Sum_probs=48.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .+++++|.   |++|..++..+...|++|+++++++++.+.+.+.+   +... .  .|-.+.+++...+.....  +++
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP   84 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            45678888   88999999888889999999999887765554222   2211 1  233332122222332221  269


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        85 d~lv~~ag   92 (241)
T PRK07454         85 DVLINNAG   92 (241)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.73  E-value=0.093  Score=40.20  Aligned_cols=77  Identities=14%  Similarity=0.231  Sum_probs=46.0

Q ss_pred             CCCEEEEE---C--chHHHHHHHHHHcCCeEEEEecCHH---HHHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---G--AYGHLVGQYAKLGGCYVVGSAGTNE---KVAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g--~vG~~a~qla~~~g~~v~~~~~~~~---~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .++.++|+   +  ++|.+.++.....|++|+..++++.   ..+.+.++.|....  .|-.+.++..+.+.+...  +.
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWGS   86 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46788888   2  6999998888888999998887642   22333223343222  344443233333333222  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        87 iDilVnnag   95 (260)
T PRK06603         87 FDFLLHGMA   95 (260)
T ss_pred             ccEEEEccc
Confidence            999998776

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.72  E-value=0.07  Score=40.59  Aligned_cols=77  Identities=23%  Similarity=0.386  Sum_probs=49.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .++++||+   |++|...++.....|++|+.+++++++.+.+.+++   +... .  .|-.+.+.+.+.+.....  +++
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   87 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPI   87 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence            46789999   89999999888888999999998877655443232   2211 1  233333122222222211  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        88 d~vi~~ag   95 (254)
T PRK08085         88 DVLINNAG   95 (254)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK06720 hypothetical protein; Provisional

Probab=95.69  E-value=0.09  Score=37.58  Aligned_cols=77  Identities=18%  Similarity=0.246  Sum_probs=46.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhC--CCCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYF--PDGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~--~~~~  104 (223)
                      +++.++|.   +++|...+......|++|+.++++.+..+...+++   +... .  .|..+.+++.+.+.+..  -+++
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~i   94 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRI   94 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            56788888   67999888888788999999998876554332132   3321 1  22222212222222211  1368


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        95 DilVnnAG  102 (169)
T PRK06720         95 DMLFQNAG  102 (169)
T ss_pred             CEEEECCC
Confidence            88888877

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.67  E-value=0.074  Score=40.53  Aligned_cols=77  Identities=14%  Similarity=0.234  Sum_probs=48.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCee---eecCCcccHHHHHHHhC--CCCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDA---FNYKEETDLKATLKRYF--PDGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~--~~~~  104 (223)
                      +++++||+   |++|..+++.....|++|+.+++++++.+.+.++   .+....   .|..+.+.+.+.+.+..  .+++
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   85 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV   85 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            46789999   8999999998888999999999988665444322   333221   23333312222222221  1258


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        86 d~vi~~ag   93 (262)
T PRK13394         86 DILVSNAG   93 (262)
T ss_pred             CEEEECCc
Confidence            99998886

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.65  E-value=0.11  Score=40.42  Aligned_cols=93  Identities=15%  Similarity=0.082  Sum_probs=60.0

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      ..+++++|.  |++|.+++..+...| .+|+.+.++.++.+.+.+.++....+.. .. +..+.+     ..+|+|++|+
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~-~~~~~~-----~~~DivInaT  193 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-DL-ELQEEL-----ADFDLIINAT  193 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-cc-cchhcc-----ccCCEEEECC
Confidence            456789999  999999999999999 5999999999887766645542110111 00 111111     2589999998


Q ss_pred             ChHHH------HHHHHhhccCcEEEEEcc
Q 043295          112 GGEML------EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       112 g~~~~------~~~~~~l~~~G~~v~~g~  134 (223)
                      .....      ......+.++..++.+-.
T Consensus       194 p~g~~~~~~~~~~~~~~l~~~~~v~DivY  222 (278)
T PRK00258        194 SAGMSGELPLPPLPLSLLRPGTIVYDMIY  222 (278)
T ss_pred             cCCCCCCCCCCCCCHHHcCCCCEEEEeec
Confidence            74221      123356777777777654

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=95.62  E-value=0.077  Score=41.03  Aligned_cols=77  Identities=21%  Similarity=0.326  Sum_probs=51.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhC---CC------eeeecCCc---ccHHHHHHHhC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG---FD------DAFNYKEE---TDLKATLKRYF  100 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g---~~------~~~~~~~~---~~~~~~i~~~~  100 (223)
                      .++.++|+   .++|.+.+......|++|+.+++++++.+....++.   ..      ...|-.+.   ..+.+...+..
T Consensus         7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~   86 (270)
T KOG0725|consen    7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKF   86 (270)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHh
Confidence            57788888   799999999999999999999999988765553322   11      12233322   12222233333


Q ss_pred             CCCccEEEcCCC
Q 043295          101 PDGIDVYFDNVG  112 (223)
Q Consensus       101 ~~~~d~vid~~g  112 (223)
                      .|++|+.++..|
T Consensus        87 ~GkidiLvnnag   98 (270)
T KOG0725|consen   87 FGKIDILVNNAG   98 (270)
T ss_pred             CCCCCEEEEcCC
Confidence            457999998776

>PLN03075 nicotianamine synthase; Provisional

Probab=95.59  E-value=0.27  Score=38.40  Aligned_cols=96  Identities=11%  Similarity=-0.012  Sum_probs=63.0

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHhh----CCCeeeecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEKL----GFDDAFNYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      .++++|+-.  |+.|..++.+++..  +.++++++.+++..+.+++.+    |...-+..... +..+...  ..++||+
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~-Da~~~~~--~l~~FDl  198 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTA-DVMDVTE--SLKEYDV  198 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEEC-chhhccc--ccCCcCE
Confidence            577888888  77888888887654  458999999999888887433    22222222222 2222110  0137999


Q ss_pred             EEcCC------Ch--HHHHHHHHhhccCcEEEEEc
Q 043295          107 YFDNV------GG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       107 vid~~------g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ||-.+      ..  ..++...+.|++||.++.=.
T Consensus       199 VF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        199 VFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             EEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            98664      22  36788899999999998754

>TIGR00477 tehB tellurite resistance protein TehB

Probab=95.59  E-value=0.12  Score=37.78  Aligned_cols=93  Identities=14%  Similarity=0.086  Sum_probs=58.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||-. .|.|..+..+++ .|.+|++++.++.-.+.+++   ..+..  +..... +... . . .++.+|+|+.+
T Consensus        29 ~~~~~vLDiGcG~G~~a~~la~-~g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~-d~~~-~-~-~~~~fD~I~~~  101 (195)
T TIGR00477        29 VAPCKTLDLGCGQGRNSLYLSL-AGYDVRAWDHNPASIASVLDMKARENLP--LRTDAY-DINA-A-A-LNEDYDFIFST  101 (195)
T ss_pred             CCCCcEEEeCCCCCHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEec-cchh-c-c-ccCCCCEEEEe
Confidence            455678877 889999998887 48899999999887766652   22322  111111 1110 0 1 12369988754


Q ss_pred             C-----Ch----HHHHHHHHhhccCcEEEEEcc
Q 043295          111 V-----GG----EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       111 ~-----g~----~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .     ..    ..+..+.+.|++||.++.+..
T Consensus       102 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~  134 (195)
T TIGR00477       102 VVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA  134 (195)
T ss_pred             cccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence            2     21    356778889999999665543

Part of a tellurite-reducing operon tehA and tehB

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.58  E-value=0.066  Score=41.67  Aligned_cols=79  Identities=18%  Similarity=0.220  Sum_probs=54.1

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeee---cCCc-----ccHHHHHHHhC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFN---YKEE-----TDLKATLKRYF--P  101 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~---~~~~-----~~~~~~i~~~~--~  101 (223)
                      ++...++|.   .++|++.+..|+..|+.|..+.++.+|++.+++.++....+.   +...     +.-...+++.-  .
T Consensus        31 k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~  110 (331)
T KOG1210|consen   31 KPRRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLE  110 (331)
T ss_pred             CccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhcc
Confidence            445788888   689999999999999999999999999988886766522111   1111     01122222221  2


Q ss_pred             CCccEEEcCCCh
Q 043295          102 DGIDVYFDNVGG  113 (223)
Q Consensus       102 ~~~d~vid~~g~  113 (223)
                      +.+|.+|.|.|.
T Consensus       111 ~~~d~l~~cAG~  122 (331)
T KOG1210|consen  111 GPIDNLFCCAGV  122 (331)
T ss_pred             CCcceEEEecCc
Confidence            368999999985

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.57  E-value=0.093  Score=39.93  Aligned_cols=78  Identities=19%  Similarity=0.279  Sum_probs=49.4

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCe-e--eecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDD-A--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~-~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      -++++++|.   |++|...++.....|++|+.+++++++.+.+.++   .+... .  .|..+.+++...+.+...  ++
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            457899999   8999998888778899999999987765543322   23211 1  233333123333332221  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++.+.|
T Consensus        89 id~vi~~ag   97 (256)
T PRK06124         89 LDILVNNVG   97 (256)
T ss_pred             CCEEEECCC
Confidence            899998887

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.56  E-value=0.24  Score=35.09  Aligned_cols=85  Identities=20%  Similarity=0.176  Sum_probs=53.8

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh-HH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG-EM  115 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~-~~  115 (223)
                      +|-+.  |.+|...++-....|++|++..+++++.+.+. +.|+... +     +..+.+.+     .|+|+-|+.. +.
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-~~g~~~~-~-----s~~e~~~~-----~dvvi~~v~~~~~   70 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-EAGAEVA-D-----SPAEAAEQ-----ADVVILCVPDDDA   70 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-HTTEEEE-S-----SHHHHHHH-----BSEEEE-SSSHHH
T ss_pred             EEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-Hhhhhhh-h-----hhhhHhhc-----ccceEeecccchh
Confidence            56666  88888888888888999999999999988888 6664222 1     23333333     6888887775 33


Q ss_pred             HHHH------HHhhccCcEEEEEccc
Q 043295          116 LEAA------VANMNLFGRVAACGVI  135 (223)
Q Consensus       116 ~~~~------~~~l~~~G~~v~~g~~  135 (223)
                      ....      +..+.++..++.+++.
T Consensus        71 v~~v~~~~~i~~~l~~g~iiid~sT~   96 (163)
T PF03446_consen   71 VEAVLFGENILAGLRPGKIIIDMSTI   96 (163)
T ss_dssp             HHHHHHCTTHGGGS-TTEEEEE-SS-
T ss_pred             hhhhhhhhHHhhccccceEEEecCCc
Confidence            3333      3344566666666543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=95.56  E-value=0.17  Score=33.40  Aligned_cols=96  Identities=22%  Similarity=0.251  Sum_probs=60.7

Q ss_pred             CCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           37 GEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        37 g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      |.+|+-. .|.|..+..+++....++++++.++.-.+.+++.+   +.+.-++.... ++.+.......+.+|+|+-...
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~~~~~~~~~~~D~Iv~npP   79 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVG-DARDLPEPLPDGKFDLIVTNPP   79 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEES-HHHHHHHTCTTT-EEEEEE--S
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEEC-chhhchhhccCceeEEEEECCC
Confidence            4566666 78898888888776579999999999888777432   22111222222 4444443333448999975221


Q ss_pred             -h--------------HHHHHHHHhhccCcEEEEEc
Q 043295          113 -G--------------EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       113 -~--------------~~~~~~~~~l~~~G~~v~~g  133 (223)
                       .              ..+..+.++|+++|.++.+-
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence             1              13667889999999998763

...

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.08  Score=40.32  Aligned_cols=76  Identities=14%  Similarity=0.175  Sum_probs=48.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC---eeeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD---DAFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      +++++||+   |++|...++.....|++|+.+++++.+.+... ++   +..   ...|..+.+++...+.+...  +++
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAE-ELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRI   84 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHH-HHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            56789999   78999988888888999999998877654333 32   322   11333333123332333222  368


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        85 d~vi~~ag   92 (258)
T PRK08628         85 DGLVNNAG   92 (258)
T ss_pred             CEEEECCc
Confidence            99999988

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=95.56  E-value=0.22  Score=38.86  Aligned_cols=98  Identities=22%  Similarity=0.171  Sum_probs=62.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      ++|++|+=. .|.|..++-.++ +|+ +|++++-.+--.+..++   ..+.... .....   -.......++.+|+|+-
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~-~~~~~---~~~~~~~~~~~~DvIVA  235 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGVELL-VQAKG---FLLLEVPENGPFDVIVA  235 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCCchh-hhccc---ccchhhcccCcccEEEe
Confidence            889998888 788887776554 566 79999977765555542   2233210 00000   00011122237999998


Q ss_pred             CCChH----HHHHHHHhhccCcEEEEEccccc
Q 043295          110 NVGGE----MLEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       110 ~~g~~----~~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      .+=.+    ...+...+++|+|++++.|....
T Consensus       236 NILA~vl~~La~~~~~~lkpgg~lIlSGIl~~  267 (300)
T COG2264         236 NILAEVLVELAPDIKRLLKPGGRLILSGILED  267 (300)
T ss_pred             hhhHHHHHHHHHHHHHHcCCCceEEEEeehHh
Confidence            77543    45567789999999999997653

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=95.55  E-value=0.11  Score=39.11  Aligned_cols=77  Identities=25%  Similarity=0.369  Sum_probs=48.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe-e--eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD-A--FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~-~--~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      ++.+++|.   |++|..+++.....|+.|+...++.++.+.+...++... .  .|-.+.+.+.+.+.+...  +++|.+
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDIL   84 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46789999   899999888888889999888888777665543444311 1  232332122222222211  369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +.+.|
T Consensus        85 i~~ag   89 (245)
T PRK12936         85 VNNAG   89 (245)
T ss_pred             EECCC
Confidence            99887

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.53  E-value=0.1  Score=40.33  Aligned_cols=77  Identities=14%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             CCCEEEEE-C----chHHHHHHHHHHcCCeEEEEecCH---HHHHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS-G----AYGHLVGQYAKLGGCYVVGSAGTN---EKVAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~-g----~vG~~a~qla~~~g~~v~~~~~~~---~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .++++||+ +    ++|.+.++.....|++|+.+.+++   ++.+.+.++++....  .|-.+.++..+.+.+...  +.
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   88 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWGK   88 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcCC
Confidence            46788998 3    699999988888999999887663   334444334553222  333333122222332222  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        89 iD~lv~nAG   97 (272)
T PRK08159         89 LDFVVHAIG   97 (272)
T ss_pred             CcEEEECCc
Confidence            999998876

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=95.52  E-value=0.39  Score=36.75  Aligned_cols=89  Identities=19%  Similarity=0.181  Sum_probs=62.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      .++.+||=. +|.|..+..+++.. +.+|++++.++.-.+.++ +.+.+.+.    . +.. .+  ...+.||+|+....
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~-~~~~~~~~----~-d~~-~~--~~~~~fD~v~~~~~   98 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAAR-ERGVDART----G-DVR-DW--KPKPDTDVVVSNAA   98 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-hcCCcEEE----c-Chh-hC--CCCCCceEEEEehh
Confidence            677888888 88899999998876 679999999998888887 55443221    1 221 11  11237999976432


Q ss_pred             -----h--HHHHHHHHhhccCcEEEEE
Q 043295          113 -----G--EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       113 -----~--~~~~~~~~~l~~~G~~v~~  132 (223)
                           .  ..+....+.|+|||.++..
T Consensus        99 l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         99 LQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             hhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence                 1  3577888999999999865

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.51  E-value=0.1  Score=39.76  Aligned_cols=76  Identities=17%  Similarity=0.279  Sum_probs=47.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH--HHHHHHhhCCCe---eeecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK--VAILKEKLGFDD---AFNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~--~~~~~~~~g~~~---~~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      ++++++|+   +++|.+.++.....|++|+.++++...  .+.++ +.+...   ..|-.+.++..+.+.+...  +++|
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD   85 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVE-ALGRKFHFITADLIQQKDIDSIVSQAVEVMGHID   85 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHH-HcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence            57889999   899999999888899999988865432  12333 344321   1344443233333333221  3699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++++.|
T Consensus        86 ~lv~~ag   92 (251)
T PRK12481         86 ILINNAG   92 (251)
T ss_pred             EEEECCC
Confidence            9999886

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.50  E-value=0.12  Score=39.57  Aligned_cols=77  Identities=16%  Similarity=0.176  Sum_probs=47.0

Q ss_pred             CCCEEEEE--C---chHHHHHHHHHHcCCeEEEEecCHHH---HHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS--G---AYGHLVGQYAKLGGCYVVGSAGTNEK---VAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~--g---~vG~~a~qla~~~g~~v~~~~~~~~~---~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .+++++|+  +   ++|.+.++.....|++|+.++++++.   .+.+.++++....  .|-.+.++....+.+...  +.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   88 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR   88 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence            57889999  3   69999998888899999998887543   2333324443222  233332122222222221  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        89 ld~lv~nAg   97 (258)
T PRK07533         89 LDFLLHSIA   97 (258)
T ss_pred             CCEEEEcCc
Confidence            999998876

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.50  E-value=0.084  Score=40.84  Aligned_cols=76  Identities=17%  Similarity=0.283  Sum_probs=49.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHH----HHHHHhhCC--CeeeecCCcccH---HHHHHHhCCC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKV----AILKEKLGF--DDAFNYKEETDL---KATLKRYFPD  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~----~~~~~~~g~--~~~~~~~~~~~~---~~~i~~~~~~  102 (223)
                      -.|+.|||+   +|+|++.++=....|++++.++.+.+..    +.++ +.|-  .++.|-.+.++.   .+++++..+ 
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~-~~g~~~~y~cdis~~eei~~~a~~Vk~e~G-  113 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIR-KIGEAKAYTCDISDREEIYRLAKKVKKEVG-  113 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHH-hcCceeEEEecCCCHHHHHHHHHHHHHhcC-
Confidence            568999999   7899988887778899988888776533    3333 3341  234444443233   333443333 


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      .+|++++..|
T Consensus       114 ~V~ILVNNAG  123 (300)
T KOG1201|consen  114 DVDILVNNAG  123 (300)
T ss_pred             CceEEEeccc
Confidence            6999998776

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.49  E-value=0.019  Score=36.13  Aligned_cols=82  Identities=23%  Similarity=0.271  Sum_probs=52.1

Q ss_pred             CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe--eeecCCcccHHHHHHHhCCCCccEEEcCCC-----h--H
Q 043295           44 GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD--AFNYKEETDLKATLKRYFPDGIDVYFDNVG-----G--E  114 (223)
Q Consensus        44 g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-----~--~  114 (223)
                      .+.|..+..+++..+.+|++++.+++..+.+++......  +...+.. ++     .+.++.+|+|+....     .  .
T Consensus         5 ~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~-~l-----~~~~~sfD~v~~~~~~~~~~~~~~   78 (95)
T PF08241_consen    5 CGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAE-DL-----PFPDNSFDVVFSNSVLHHLEDPEA   78 (95)
T ss_dssp             -TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTT-SS-----SS-TT-EEEEEEESHGGGSSHHHH
T ss_pred             CcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHH-hC-----ccccccccccccccceeeccCHHH
Confidence            467888999999867799999999998898884333222  2111111 11     112236898875332     1  3


Q ss_pred             HHHHHHHhhccCcEEEE
Q 043295          115 MLEAAVANMNLFGRVAA  131 (223)
Q Consensus       115 ~~~~~~~~l~~~G~~v~  131 (223)
                      .+..+.+.|+++|+++.
T Consensus        79 ~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   79 ALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHcCcCeEEeC
Confidence            57889999999999873

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK08317 hypothetical protein; Provisional

Probab=95.48  E-value=0.26  Score=36.94  Aligned_cols=95  Identities=20%  Similarity=0.242  Sum_probs=62.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHhh--CCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEKL--GFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .++++||-. .+.|..+..+++..+  .++++++.++...+.++ +.  .....+..... +... . ....+.+|+|+.
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~-~~~~~~~~~~~~~~~-d~~~-~-~~~~~~~D~v~~   93 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAK-ERAAGLGPNVEFVRG-DADG-L-PFPDGSFDAVRS   93 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-HHhhCCCCceEEEec-cccc-C-CCCCCCceEEEE
Confidence            778899888 777999999998873  59999999998888887 43  11111111111 1100 0 112236888874


Q ss_pred             CC-----Ch--HHHHHHHHhhccCcEEEEEc
Q 043295          110 NV-----GG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       110 ~~-----g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ..     ..  ..+....++|+++|.++...
T Consensus        94 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         94 DRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             echhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            32     22  36788899999999998765

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=95.48  E-value=0.32  Score=40.38  Aligned_cols=98  Identities=18%  Similarity=0.188  Sum_probs=63.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      ++|++||=. .+.|..+.+++...  +.+|++++.++++++.+++   .+|.+.+- .... +.. .+.....+.||.|+
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~-~~~~-Da~-~l~~~~~~~fD~Vl  312 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIE-IKIA-DAE-RLTEYVQDTFDRIL  312 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEE-EEEC-chh-hhhhhhhccCCEEE
Confidence            788887777 78898889999887  4599999999999887763   34554321 1111 111 12212233699886


Q ss_pred             -c--CCChH--------------------------HHHHHHHhhccCcEEEEEccc
Q 043295          109 -D--NVGGE--------------------------MLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       109 -d--~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~  135 (223)
                       |  |+|..                          .+..++..|++||.++.....
T Consensus       313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs  368 (431)
T PRK14903        313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT  368 (431)
T ss_pred             ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence             3  44321                          155778899999998876653

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.47  E-value=0.094  Score=39.92  Aligned_cols=77  Identities=18%  Similarity=0.217  Sum_probs=46.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH-HHHHHHH---hhCCCe-e--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE-KVAILKE---KLGFDD-A--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~-~~~~~~~---~~g~~~-~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      ++++++|+   +++|.++++.....|++|+.++++.+ ..+.+.+   ..+... .  .|-.+.++..+.+.+...  +.
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   86 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGA   86 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            56788999   89999999988889999999987643 2222211   223211 1  233333133333333221  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++.+.|
T Consensus        87 id~li~~ag   95 (254)
T PRK06114         87 LTLAVNAAG   95 (254)
T ss_pred             CCEEEECCC
Confidence            899999887

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.43  E-value=0.066  Score=41.39  Aligned_cols=104  Identities=20%  Similarity=0.273  Sum_probs=65.3

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCe-e----eecCCcccHHHHHHHhCC--
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDD-A----FNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~-~----~~~~~~~~~~~~i~~~~~--  101 (223)
                      -.++.|+|+   +|+|.+.+.-....|++++.+++..++++.+.+   +.+... +    .|-.+.++..+.+.+...  
T Consensus        10 ~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   10 LAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             hCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            568899999   899988887777889998888888887776622   233322 2    233333233333322221  


Q ss_pred             CCccEEEcCCChH-----------HH---------------HHHHHhhcc-C-cEEEEEcccccc
Q 043295          102 DGIDVYFDNVGGE-----------ML---------------EAAVANMNL-F-GRVAACGVISEC  138 (223)
Q Consensus       102 ~~~d~vid~~g~~-----------~~---------------~~~~~~l~~-~-G~~v~~g~~~~~  138 (223)
                      |++|+.++..|-.           .+               ..++..|++ + |++|.++...+.
T Consensus        90 g~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~  154 (282)
T KOG1205|consen   90 GRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGK  154 (282)
T ss_pred             CCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccc
Confidence            3799999877621           11               134455543 3 999999887764

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.37  E-value=0.11  Score=39.22  Aligned_cols=77  Identities=19%  Similarity=0.257  Sum_probs=46.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCe-e--eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDD-A--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~-~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .+++++|+   |++|...+......|++|++++++.++.....+.   .+... +  .|..+.+.+.+.+.+...  +.+
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   84 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL   84 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            35789999   8999988888888899999999986654433212   22211 1  233332122222222211  258


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        85 d~vi~~ag   92 (251)
T PRK12826         85 DILVANAG   92 (251)
T ss_pred             CEEEECCC
Confidence            99988875

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.37  E-value=0.096  Score=39.89  Aligned_cols=77  Identities=18%  Similarity=0.258  Sum_probs=49.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCe---eeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDD---AFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .+++++|.   +++|...+......|++|+.++++.++.+.+.++   .+...   ..|..+.++..+.+.....  +++
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~   89 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKV   89 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999   8999999988888899999999887766544322   23211   1344433223333332221  368


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        90 d~li~~ag   97 (255)
T PRK06113         90 DILVNNAG   97 (255)
T ss_pred             CEEEECCC
Confidence            99999887

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=95.36  E-value=0.15  Score=40.28  Aligned_cols=76  Identities=13%  Similarity=0.189  Sum_probs=48.8

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCC--C--ee--eecCCcccHHHHHHHhC--CCCc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGF--D--DA--FNYKEETDLKATLKRYF--PDGI  104 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~--~--~~--~~~~~~~~~~~~i~~~~--~~~~  104 (223)
                      +++++|.   +++|.+.++.....| ++|+.++++.++.+.+.++++.  .  ..  .|-.+.++....+.+..  .+++
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   82 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPL   82 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            5688888   789999888777889 8999999988876655435432  1  11  34333312332333322  2369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |++|.+.|
T Consensus        83 D~lI~nAG   90 (314)
T TIGR01289        83 DALVCNAA   90 (314)
T ss_pred             CEEEECCC
Confidence            99998876

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK08226 short chain dehydrogenase; Provisional

Probab=95.36  E-value=0.13  Score=39.30  Aligned_cols=77  Identities=17%  Similarity=0.244  Sum_probs=46.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH--hhCCCe---eeecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE--KLGFDD---AFNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~--~~g~~~---~~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      ++++++|.   |++|...++.+...|++|+.++++.+..+.+.+  ..+...   ..|..+..+....+.+...  +.+|
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id   84 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRID   84 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            46788999   899999998888889999999988754333331  223221   1233332122222222211  3689


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      ++|.+.|
T Consensus        85 ~vi~~ag   91 (263)
T PRK08226         85 ILVNNAG   91 (263)
T ss_pred             EEEECCC
Confidence            9999887

>PRK07985 oxidoreductase; Provisional

Probab=95.35  E-value=0.28  Score=38.40  Aligned_cols=78  Identities=18%  Similarity=0.138  Sum_probs=45.7

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH--HHHHHHHH---hhCCCe---eeecCCcccHHHHHHHhCC--
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN--EKVAILKE---KLGFDD---AFNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~--~~~~~~~~---~~g~~~---~~~~~~~~~~~~~i~~~~~--  101 (223)
                      -++++++|.   |++|.+.++.....|++|+.+.++.  ++.+.+.+   +.|...   ..|-.+.+.....+.+...  
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  126 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL  126 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            345789999   8999999988888899999876542  23333321   223221   1233333123333333222  


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|+++.+.|
T Consensus       127 g~id~lv~~Ag  137 (294)
T PRK07985        127 GGLDIMALVAG  137 (294)
T ss_pred             CCCCEEEECCC
Confidence            36899988776

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=95.34  E-value=0.23  Score=37.25  Aligned_cols=93  Identities=17%  Similarity=0.150  Sum_probs=61.8

Q ss_pred             CCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe--eeecCCcccHHHHHHHhCCCCccEEEc---
Q 043295           36 KGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD--AFNYKEETDLKATLKRYFPDGIDVYFD---  109 (223)
Q Consensus        36 ~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~i~~~~~~~~d~vid---  109 (223)
                      +|.+||=. .|.|... +-..+.|++|++++-+++-.+.++ ......  -+||...  ..+.+.+.. +.||+|+.   
T Consensus        59 ~g~~vLDvGCGgG~Ls-e~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~--~~edl~~~~-~~FDvV~cmEV  133 (243)
T COG2227          59 PGLRVLDVGCGGGILS-EPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQA--TVEDLASAG-GQFDVVTCMEV  133 (243)
T ss_pred             CCCeEEEecCCccHhh-HHHHHCCCeeEEecCChHHHHHHH-Hhhhhccccccchhh--hHHHHHhcC-CCccEEEEhhH
Confidence            67777777 4556544 444556899999999999888887 433322  2456653  344443321 47999964   


Q ss_pred             --CCCh--HHHHHHHHhhccCcEEEEEc
Q 043295          110 --NVGG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       110 --~~g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                        -+..  ..+..+..+++|+|.++...
T Consensus       134 lEHv~dp~~~~~~c~~lvkP~G~lf~ST  161 (243)
T COG2227         134 LEHVPDPESFLRACAKLVKPGGILFLST  161 (243)
T ss_pred             HHccCCHHHHHHHHHHHcCCCcEEEEec
Confidence              4443  35778899999999988764

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=95.28  E-value=0.18  Score=38.35  Aligned_cols=98  Identities=17%  Similarity=0.229  Sum_probs=63.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHH-HHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLK-ATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~-~~i~~~~~~~~d~v  107 (223)
                      .||++|+=- .|.|.+...+++..|-  +|+....++++.+.+++.   +|....+.-... +.. +...+-.++.+|.|
T Consensus        39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~-Dv~~~g~~~~~~~~~Dav  117 (247)
T PF08704_consen   39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHR-DVCEEGFDEELESDFDAV  117 (247)
T ss_dssp             -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES--GGCG--STT-TTSEEEE
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEec-ceecccccccccCcccEE
Confidence            999999888 7889999999998874  999999999888777643   455322111111 111 11111112358876


Q ss_pred             -EcCCCh-HHHHHHHHhh-ccCcEEEEEc
Q 043295          108 -FDNVGG-EMLEAAVANM-NLFGRVAACG  133 (223)
Q Consensus       108 -id~~g~-~~~~~~~~~l-~~~G~~v~~g  133 (223)
                       +|-... ..+..+...| ++||+++.+.
T Consensus       118 fLDlp~Pw~~i~~~~~~L~~~gG~i~~fs  146 (247)
T PF08704_consen  118 FLDLPDPWEAIPHAKRALKKPGGRICCFS  146 (247)
T ss_dssp             EEESSSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred             EEeCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence             465553 6789999999 8999999885

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK07856 short chain dehydrogenase; Provisional

Probab=95.27  E-value=0.096  Score=39.80  Aligned_cols=72  Identities=19%  Similarity=0.261  Sum_probs=46.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC--C-eeeecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF--D-DAFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~--~-~~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .+++++|.   |++|...++.....|++|+.+++++++    . ..+.  . ...|..+.+++.+.+.....  +.+|++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~----~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   79 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE----T-VDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVL   79 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh----h-hcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46889999   899999998888899999999987654    1 2222  1 12343333123333333221  368999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      |.+.|
T Consensus        80 i~~ag   84 (252)
T PRK07856         80 VNNAG   84 (252)
T ss_pred             EECCC
Confidence            99886

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.25  E-value=0.12  Score=39.62  Aligned_cols=77  Identities=10%  Similarity=0.202  Sum_probs=45.2

Q ss_pred             CCCEEEEE-C----chHHHHHHHHHHcCCeEEEEecCHHHHHHHH---HhhCCCee--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS-G----AYGHLVGQYAKLGGCYVVGSAGTNEKVAILK---EKLGFDDA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~-g----~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~---~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      ++++++|+ |    ++|.+.++.....|++|+.+.++++..+.++   +++|....  .|-.+.++....+.+...  ++
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDG   84 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            46788888 3    6999999888889999998876543223332   12332222  233333223323322222  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        85 iD~lVnnAG   93 (261)
T PRK08690         85 LDGLVHSIG   93 (261)
T ss_pred             CcEEEECCc
Confidence            999999876

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.24  E-value=0.17  Score=38.75  Aligned_cols=78  Identities=18%  Similarity=0.236  Sum_probs=48.5

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      -.+++++|.   +++|...+......|++|+.+.+++++.+.+.+.+   |...   ..|-.+..+....+.+...  ++
T Consensus         8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (265)
T PRK07097          8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGV   87 (265)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            356789999   89998888777788999999998887665443232   3321   1233332122222222211  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++.+.|
T Consensus        88 id~li~~ag   96 (265)
T PRK07097         88 IDILVNNAG   96 (265)
T ss_pred             CCEEEECCC
Confidence            899998887

>PRK12937 short chain dehydrogenase; Provisional

Probab=95.23  E-value=0.39  Score=36.10  Aligned_cols=77  Identities=16%  Similarity=0.137  Sum_probs=44.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH-HHHHHHH---hhCCC-ee--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE-KVAILKE---KLGFD-DA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~-~~~~~~~---~~g~~-~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      ++.+++|+   |++|...++.....|++|+.+.++.. ..+.+.+   ..+.. ..  .|-.+.+++.+.+.+...  ++
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGR   83 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            56789999   89999999988889999888775432 2222221   22321 11  233332122222222211  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|++|.+.|
T Consensus        84 id~vi~~ag   92 (245)
T PRK12937         84 IDVLVNNAG   92 (245)
T ss_pred             CCEEEECCC
Confidence            899998887

>TIGR00417 speE spermidine synthase

Probab=95.22  E-value=0.42  Score=36.99  Aligned_cols=97  Identities=18%  Similarity=0.116  Sum_probs=60.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCC-Ce-----eeecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGF-DD-----AFNYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~-~~-----~~~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      +.+++||+. ++.|..+..+++..+. +++++..+++-.+.+++.+.. ..     -++.... +..+.+++. .+.+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~-D~~~~l~~~-~~~yDv  148 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQID-DGFKFLADT-ENTFDV  148 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEEC-chHHHHHhC-CCCccE
Confidence            455699999 7788888888876644 899999888777777632211 00     0111111 333334332 347998


Q ss_pred             EEc-CC---C-------hHHHHHHHHhhccCcEEEEEc
Q 043295          107 YFD-NV---G-------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       107 vid-~~---g-------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+- ..   +       .+.++.+.+.|+++|.++...
T Consensus       149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            863 32   1       134567889999999998763

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.21  E-value=0.21  Score=38.75  Aligned_cols=92  Identities=15%  Similarity=0.128  Sum_probs=65.3

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      -+||+.......|..+.  -.|++|+|.   ..+|.-.+.+....|++|+.....                    .. ++
T Consensus       137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------------t~-~l  195 (285)
T PRK14189        137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------------TR-DL  195 (285)
T ss_pred             CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------------CC-CH
Confidence            45666666666666666  689999999   455999999999999999874321                    11 33


Q ss_pred             HHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      .+.+++     .|+|+-++|.+.+- .-+.++++..++.+|...
T Consensus       196 ~~~~~~-----ADIVV~avG~~~~i-~~~~ik~gavVIDVGin~  233 (285)
T PRK14189        196 AAHTRQ-----ADIVVAAVGKRNVL-TADMVKPGATVIDVGMNR  233 (285)
T ss_pred             HHHhhh-----CCEEEEcCCCcCcc-CHHHcCCCCEEEEccccc
Confidence            333333     89999999975432 237899999999998643

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.20  E-value=0.24  Score=38.45  Aligned_cols=91  Identities=16%  Similarity=0.074  Sum_probs=64.3

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE--C-chHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS--G-AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~--g-~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      -+|++....+..|..+.  -.|++|+|.  | .+|.-++.+....|++|+... +..+                    ++
T Consensus       136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~h-s~t~--------------------~l  194 (285)
T PRK14191        136 FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCH-ILTK--------------------DL  194 (285)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEe-CCcH--------------------HH
Confidence            45666666676676666  579999999  4 899999999999999987753 2111                    22


Q ss_pred             HHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .+.+++     .|+++-++|.+.+- .-+.+++|..++.+|..
T Consensus       195 ~~~~~~-----ADIvV~AvG~p~~i-~~~~vk~GavVIDvGi~  231 (285)
T PRK14191        195 SFYTQN-----ADIVCVGVGKPDLI-KASMVKKGAVVVDIGIN  231 (285)
T ss_pred             HHHHHh-----CCEEEEecCCCCcC-CHHHcCCCcEEEEeecc
Confidence            222322     89999999975432 24466999999999864

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.19  E-value=0.21  Score=38.67  Aligned_cols=65  Identities=15%  Similarity=0.113  Sum_probs=46.3

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      ..+++++|.  |+.+++++.-++..|+ +|+.+.|++++.+.+.+.++..          +.+.+.   ...+|+|++|+
T Consensus       120 ~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~----------~~~~~~---~~~~dlvINaT  186 (272)
T PRK12550        120 PPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYE----------WRPDLG---GIEADILVNVT  186 (272)
T ss_pred             CCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCc----------chhhcc---cccCCEEEECC
Confidence            445689988  9999999988888998 6999999998877766444321          111110   12589999998


Q ss_pred             C
Q 043295          112 G  112 (223)
Q Consensus       112 g  112 (223)
                      .
T Consensus       187 p  187 (272)
T PRK12550        187 P  187 (272)
T ss_pred             c
Confidence            5

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=95.19  E-value=0.13  Score=39.07  Aligned_cols=76  Identities=21%  Similarity=0.319  Sum_probs=45.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH--HHHHHHHhhCCCe-e--eecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE--KVAILKEKLGFDD-A--FNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~--~~~~~~~~~g~~~-~--~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      ++++++|.   |++|.+.++.....|++|+.+.++..  ..+.++ ..+... .  .|-.+.++....+.+...  +++|
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D   87 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVT-ALGRRFLSLTADLRKIDGIPALLERAVAEFGHID   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHH-hcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            46889999   89999999988889999998875432  223333 334211 1  233322122222332221  2699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++++.|
T Consensus        88 ~li~~Ag   94 (253)
T PRK08993         88 ILVNNAG   94 (253)
T ss_pred             EEEECCC
Confidence            9999887

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=95.19  E-value=0.66  Score=35.47  Aligned_cols=90  Identities=16%  Similarity=0.158  Sum_probs=61.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCC-CCccEEEcCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFP-DGIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-~~~d~vid~~  111 (223)
                      .++++||=. .|.|..+..+++.. +.+|++++.++.-.+.+++.+.....+..    +..    .... +.+|+|+...
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~----d~~----~~~~~~~fD~v~~~~  101 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA----DIA----SWQPPQALDLIFANA  101 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC----chh----ccCCCCCccEEEEcc
Confidence            677888888 88899999999876 56999999999888888733321112211    111    1112 2689887543


Q ss_pred             C-----h--HHHHHHHHhhccCcEEEEE
Q 043295          112 G-----G--EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       112 g-----~--~~~~~~~~~l~~~G~~v~~  132 (223)
                      .     .  ..+....+.|++||.++..
T Consensus       102 ~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683        102 SLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             ChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            2     2  3577888999999998875

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.18  E-value=0.19  Score=38.86  Aligned_cols=93  Identities=13%  Similarity=0.133  Sum_probs=58.3

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-eeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      .++++++|.  |++|.+++......|++|+.+.++.++.+.+.+.++.. .+...    .+.+    .....+|+|++|+
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~----~~~~----~~~~~~DivInat  186 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAF----SMDE----LPLHRVDLIINAT  186 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEe----chhh----hcccCccEEEECC
Confidence            457889998  89998888877788999999999887766554344321 11100    1111    1112589999999


Q ss_pred             ChHH---HH---HHHHhhccCcEEEEEccc
Q 043295          112 GGEM---LE---AAVANMNLFGRVAACGVI  135 (223)
Q Consensus       112 g~~~---~~---~~~~~l~~~G~~v~~g~~  135 (223)
                      +...   ..   .....++++..++.+...
T Consensus       187 p~gm~~~~~~~~~~~~~l~~~~~v~D~~y~  216 (270)
T TIGR00507       187 SAGMSGNIDEPPVPAEKLKEGMVVYDMVYN  216 (270)
T ss_pred             CCCCCCCCCCCCCCHHHcCCCCEEEEeccC
Confidence            7521   11   123456777778777543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.15  E-value=0.16  Score=39.01  Aligned_cols=77  Identities=16%  Similarity=0.263  Sum_probs=45.9

Q ss_pred             CCCEEEEE--C---chHHHHHHHHHHcCCeEEEEecCHH---HHHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS--G---AYGHLVGQYAKLGGCYVVGSAGTNE---KVAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~--g---~vG~~a~qla~~~g~~v~~~~~~~~---~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      ++++++|+  +   ++|.+.++.....|++|+.++++++   ..+.+.++.+....  .|-.+.++....+.+...  +.
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   84 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPK   84 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence            46788999  2   6999988888889999998887632   22223212222111  243333233333333322  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        85 iD~linnAg   93 (262)
T PRK07984         85 FDGFVHSIG   93 (262)
T ss_pred             CCEEEECCc
Confidence            999999887

>PRK07791 short chain dehydrogenase; Provisional

Probab=95.15  E-value=0.15  Score=39.69  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=46.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH---------HHHHHHHHhh---CCCee---eecCCcccHHHHHH
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN---------EKVAILKEKL---GFDDA---FNYKEETDLKATLK   97 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~---------~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~   97 (223)
                      ++++++|+   +++|.+.++.....|++|+.++++.         ++.+.+.+++   |....   .|-.+.++..+.+.
T Consensus         5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~   84 (286)
T PRK07791          5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVD   84 (286)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence            46789999   8999999988888999999887654         3333332233   32211   23333212333333


Q ss_pred             HhCC--CCccEEEcCCC
Q 043295           98 RYFP--DGIDVYFDNVG  112 (223)
Q Consensus        98 ~~~~--~~~d~vid~~g  112 (223)
                      +...  +.+|+++++.|
T Consensus        85 ~~~~~~g~id~lv~nAG  101 (286)
T PRK07791         85 AAVETFGGLDVLVNNAG  101 (286)
T ss_pred             HHHHhcCCCCEEEECCC
Confidence            3221  36999999887

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.15  E-value=0.1  Score=38.39  Aligned_cols=79  Identities=18%  Similarity=0.208  Sum_probs=53.1

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -.|.+++|.  |.+|..+++.+...|++|++++.++++.+.+.+.+|+. .++..   ++.       ...+|+++-|..
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~-~v~~~---~l~-------~~~~Dv~vp~A~   94 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGAT-VVAPE---EIY-------SVDADVFAPCAL   94 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEcch---hhc-------cccCCEEEeccc
Confidence            457889999  99999999999999999999998888877776455653 22221   111       114888886654


Q ss_pred             h-HHHHHHHHhhc
Q 043295          113 G-EMLEAAVANMN  124 (223)
Q Consensus       113 ~-~~~~~~~~~l~  124 (223)
                      + ..-...+..++
T Consensus        95 ~~~I~~~~~~~l~  107 (200)
T cd01075          95 GGVINDDTIPQLK  107 (200)
T ss_pred             ccccCHHHHHHcC
Confidence            3 22333444443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.13  E-value=0.16  Score=38.63  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=46.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH-HHHHHHHHhhCCCe-eeecCCcccHHHHHHHhCC--CCccEEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN-EKVAILKEKLGFDD-AFNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~-~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      .+++++|.   |++|...++.....|++|+.+.++. +..+.++ ..+... ..|-.+..+..+.+.+...  +++|+++
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li   84 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELR-EKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLV   84 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-hCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            46788999   8999999988888899998876543 3344444 333322 1343333233333333221  3689999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      .+.|
T Consensus        85 ~~ag   88 (255)
T PRK06463         85 NNAG   88 (255)
T ss_pred             ECCC
Confidence            8886

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.13  E-value=0.11  Score=39.58  Aligned_cols=77  Identities=14%  Similarity=0.194  Sum_probs=47.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCC-e--eeecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFD-D--AFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~-~--~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      -.++++||.   |++|...++.....|++|+.++++ ++.+.+.+   +.+.. .  ..|-.+.+.....+.+...  ++
T Consensus        13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   91 (258)
T PRK06935         13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGK   91 (258)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            457899999   899999998888899999999877 33333321   23322 1  1333333122222322221  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++.+.|
T Consensus        92 id~li~~ag  100 (258)
T PRK06935         92 IDILVNNAG  100 (258)
T ss_pred             CCEEEECCC
Confidence            899998876

>PRK07775 short chain dehydrogenase; Provisional

Probab=95.12  E-value=0.22  Score=38.48  Aligned_cols=78  Identities=17%  Similarity=0.162  Sum_probs=47.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCee---eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDA---FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      +.++++|+   |++|...++.+...|++|+.++++..+.+.+.+   ..+....   .|..+..++.+.+.+...  +++
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEI   88 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            34688999   899999998888889999999987765543331   2233211   233333122222222211  368


Q ss_pred             cEEEcCCCh
Q 043295          105 DVYFDNVGG  113 (223)
Q Consensus       105 d~vid~~g~  113 (223)
                      |++|.+.|.
T Consensus        89 d~vi~~Ag~   97 (274)
T PRK07775         89 EVLVSGAGD   97 (274)
T ss_pred             CEEEECCCc
Confidence            999988863

>PRK07577 short chain dehydrogenase; Provisional

Probab=95.11  E-value=0.099  Score=39.12  Aligned_cols=71  Identities=21%  Similarity=0.179  Sum_probs=46.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-eeeecCCcccHHHHHHHhCCC-CccEEEcC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DAFNYKEETDLKATLKRYFPD-GIDVYFDN  110 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~-~~d~vid~  110 (223)
                      ++++++|.   |++|...++.....|++|+.++++..+ .     .... ...|..+.+...+.+.+.... ++|+++.+
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~-~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~   75 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID-D-----FPGELFACDLADIEQTAATLAQINEIHPVDAIVNN   75 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc-c-----cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEEC
Confidence            35788999   899999998888889999999987654 1     1111 123444332333334333333 68999998


Q ss_pred             CC
Q 043295          111 VG  112 (223)
Q Consensus       111 ~g  112 (223)
                      .|
T Consensus        76 ag   77 (234)
T PRK07577         76 VG   77 (234)
T ss_pred             CC
Confidence            87

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=95.10  E-value=0.44  Score=34.45  Aligned_cols=94  Identities=19%  Similarity=0.176  Sum_probs=59.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      -++++||=. +|.|..+..+++.. +.+|++++.+++..+.+++   +.|.+.+ ..-.. +..+ +  ...+.+|+|+-
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i-~~i~~-d~~~-~--~~~~~fD~I~s  115 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNV-EIVNG-RAED-F--QHEEQFDVITS  115 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCe-EEEec-chhh-c--cccCCccEEEe
Confidence            347787777 78898888888765 4599999999876655542   3454332 11111 2222 2  11237998875


Q ss_pred             CCC-h--HHHHHHHHhhccCcEEEEEc
Q 043295          110 NVG-G--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       110 ~~g-~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ..- .  +.++.+.++|+++|.++..-
T Consensus       116 ~~~~~~~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       116 RALASLNVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             hhhhCHHHHHHHHHHhcCCCCEEEEEc
Confidence            432 1  34566788999999998763

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.10  E-value=0.16  Score=38.47  Aligned_cols=40  Identities=20%  Similarity=0.193  Sum_probs=33.1

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHH
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL   74 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~   74 (223)
                      .++++++|.   |++|...++.....|++|+.++++.++.+.+
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~   52 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAV   52 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Confidence            567899999   8899988888778899999999988765444

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=95.10  E-value=0.36  Score=37.69  Aligned_cols=62  Identities=16%  Similarity=0.188  Sum_probs=46.8

Q ss_pred             hHHHHHHHHh-----hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEe---cCHHHHHHHHHhhCCCeeeecC
Q 043295           25 TAYVGFYEIS-----QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSA---GTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        25 ta~~~l~~~~-----~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~---~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      .|++.+....     +||.+|+=-  |..|.+++.+|+..|++++.+.   .|.++.+.++ .+|+..++...
T Consensus        45 ~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~-a~GAevi~t~~  116 (300)
T COG0031          45 IALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLR-ALGAEVILTPG  116 (300)
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HcCCEEEEcCC
Confidence            5666666554     778865544  9999999999999999877776   4677888888 89986655443

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.09  E-value=0.19  Score=38.27  Aligned_cols=99  Identities=17%  Similarity=0.087  Sum_probs=58.0

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh-hCCCee-eecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK-LGFDDA-FNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .++.+|+|+   |.+|..+++.+...|++|+++.+++++....... .++..+ .|..+.   .+.+.+....++|+||.
T Consensus        15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~l~~~~~~~~d~vi~   91 (251)
T PLN00141         15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEG---SDKLVEAIGDDSDAVIC   91 (251)
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCC---HHHHHHHhhcCCCEEEE
Confidence            346789999   7899999888877899999999887765433211 112211 233321   12233333226999998


Q ss_pred             CCChH--------------HHHHHHHhhcc--CcEEEEEcccc
Q 043295          110 NVGGE--------------MLEAAVANMNL--FGRVAACGVIS  136 (223)
Q Consensus       110 ~~g~~--------------~~~~~~~~l~~--~G~~v~~g~~~  136 (223)
                      +.|..              .....++.+..  .++++.++...
T Consensus        92 ~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~  134 (251)
T PLN00141         92 ATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSIL  134 (251)
T ss_pred             CCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            87631              12233443432  36888877653

>PRK12367 short chain dehydrogenase; Provisional

Probab=95.08  E-value=0.26  Score=37.52  Aligned_cols=71  Identities=18%  Similarity=0.299  Sum_probs=45.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH-HHHHHHHhhCCCee--eecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE-KVAILKEKLGFDDA--FNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~-~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      -.+++++|+   |++|...++.....|++|+.+++++. ..+...  .+....  .|-.+.    +.+.+.. +++|+++
T Consensus        12 l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~--~~~~~~~~~D~~~~----~~~~~~~-~~iDilV   84 (245)
T PRK12367         12 WQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESND--ESPNEWIKWECGKE----ESLDKQL-ASLDVLI   84 (245)
T ss_pred             hCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhc--cCCCeEEEeeCCCH----HHHHHhc-CCCCEEE
Confidence            356899999   78999999988889999999998762 222111  111122  233322    2233333 3599999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        85 nnAG   88 (245)
T PRK12367         85 LNHG   88 (245)
T ss_pred             ECCc
Confidence            9887

>PRK07574 formate dehydrogenase; Provisional

Probab=95.08  E-value=0.17  Score=41.19  Aligned_cols=86  Identities=13%  Similarity=0.023  Sum_probs=51.6

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .|++|.|+  |.+|...++.++..|.+|++.+++....+..+ .+|....    .  ++.+.+.     ..|+|+-+...
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-~~g~~~~----~--~l~ell~-----~aDvV~l~lPl  258 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-ELGLTYH----V--SFDSLVS-----VCDVVTIHCPL  258 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-hcCceec----C--CHHHHhh-----cCCEEEEcCCC
Confidence            45678888  99999999999999999999997753333333 4443211    0  2222222     25666655542


Q ss_pred             -H-H---H-HHHHHhhccCcEEEEEc
Q 043295          114 -E-M---L-EAAVANMNLFGRVAACG  133 (223)
Q Consensus       114 -~-~---~-~~~~~~l~~~G~~v~~g  133 (223)
                       + +   + ...+..|+++..+|.++
T Consensus       259 t~~T~~li~~~~l~~mk~ga~lIN~a  284 (385)
T PRK07574        259 HPETEHLFDADVLSRMKRGSYLVNTA  284 (385)
T ss_pred             CHHHHHHhCHHHHhcCCCCcEEEECC
Confidence             1 1   1 23455666666666554

>PRK13243 glyoxylate reductase; Reviewed

Probab=95.05  E-value=0.2  Score=40.07  Aligned_cols=84  Identities=20%  Similarity=0.136  Sum_probs=51.9

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .|++|.|.  |.+|...++.++..|.+|++.+++.... ... ..|...      . ++.+.+.+     .|+|+-++..
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~-~~~~~~------~-~l~ell~~-----aDiV~l~lP~  214 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEK-ELGAEY------R-PLEELLRE-----SDFVSLHVPL  214 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHH-HcCCEe------c-CHHHHHhh-----CCEEEEeCCC
Confidence            46789999  9999999999999999999998765442 222 344311      1 23333322     5666665542


Q ss_pred             -H-H----HHHHHHhhccCcEEEEEc
Q 043295          114 -E-M----LEAAVANMNLFGRVAACG  133 (223)
Q Consensus       114 -~-~----~~~~~~~l~~~G~~v~~g  133 (223)
                       + +    -...+..|+++..++.++
T Consensus       215 t~~T~~~i~~~~~~~mk~ga~lIN~a  240 (333)
T PRK13243        215 TKETYHMINEERLKLMKPTAILVNTA  240 (333)
T ss_pred             ChHHhhccCHHHHhcCCCCeEEEECc
Confidence             1 1    124555666666666655

>PRK06398 aldose dehydrogenase; Validated

Probab=95.05  E-value=0.047  Score=41.76  Aligned_cols=72  Identities=15%  Similarity=0.157  Sum_probs=45.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCC--CCccEEEcC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFP--DGIDVYFDN  110 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~--~~~d~vid~  110 (223)
                      .++++||+   +++|.+.+......|++|+.+++++.+...+.     ....|-.+..+..+.+.+...  +++|+++++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~-----~~~~D~~~~~~i~~~~~~~~~~~~~id~li~~   79 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYNDVD-----YFKVDVSNKEQVIKGIDYVISKYGRIDILVNN   79 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccccCceE-----EEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            46789999   79999999988889999999997754322111     111233333233333333322  269999988


Q ss_pred             CC
Q 043295          111 VG  112 (223)
Q Consensus       111 ~g  112 (223)
                      .|
T Consensus        80 Ag   81 (258)
T PRK06398         80 AG   81 (258)
T ss_pred             CC
Confidence            76

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=95.01  E-value=0.11  Score=40.35  Aligned_cols=126  Identities=17%  Similarity=0.095  Sum_probs=81.3

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc----------ccHHHHHHHhCC-
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE----------TDLKATLKRYFP-  101 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~i~~~~~-  101 (223)
                      .++..+++.  |..|+.++-.++..|+-|......+.+-+..+ ++|+...--.+++          .+|..+-.++.. 
T Consensus       162 v~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~-s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~  240 (356)
T COG3288         162 VSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVE-SLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE  240 (356)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhh-hcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence            344556666  89999999999999999999998888878887 7887433111110          123333222222 


Q ss_pred             C--CccEEEcCC---ChH----HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295          102 D--GIDVYFDNV---GGE----MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus       102 ~--~~d~vid~~---g~~----~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      .  ++|+||-+.   |.+    ......+.|+||..+|.+....+.+-+...   .......+++++.|...
T Consensus       241 ~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~---pg~~v~~~gV~iig~~n  309 (356)
T COG3288         241 QAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTE---PGKVVTKNGVKIIGYTN  309 (356)
T ss_pred             HhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhcCCCccccc---CCeEEEeCCeEEEeecC
Confidence            2  799999876   322    356788999999999998876554432211   11333456777777553

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.01  E-value=0.24  Score=38.59  Aligned_cols=92  Identities=20%  Similarity=0.032  Sum_probs=57.0

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCC----CeeeecCCcccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGF----DDAFNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      ..+++|+|.  |++|.+++..+...|+ +|+.+.++.++.+.+.+.++.    ..+....   ++.+.+     ..+|+|
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~---~~~~~~-----~~aDiV  196 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGS---DLAAAL-----AAADGL  196 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEecc---chHhhh-----CCCCEE
Confidence            456789999  9999999999999998 899999998887766544432    1121111   222111     248999


Q ss_pred             EcCCCh-----HHHHHHHHhhccCcEEEEEcc
Q 043295          108 FDNVGG-----EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       108 id~~g~-----~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      ++|+..     +........++++..+..+-.
T Consensus       197 InaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY  228 (284)
T PRK12549        197 VHATPTGMAKHPGLPLPAELLRPGLWVADIVY  228 (284)
T ss_pred             EECCcCCCCCCCCCCCCHHHcCCCcEEEEeee
Confidence            999631     111112245666666655543

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.00  E-value=0.25  Score=38.21  Aligned_cols=75  Identities=20%  Similarity=0.252  Sum_probs=46.4

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC-ee--eecCCcccHHHHHHHhC-CCCccEE
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD-DA--FNYKEETDLKATLKRYF-PDGIDVY  107 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~~--~~~~~~~~~~~~i~~~~-~~~~d~v  107 (223)
                      ++.++|.  |++|.+++.... .|++|+.+++++++.+.+.+++   |.. ..  .|-.+.+.....+.... -+++|++
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l   80 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGL   80 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence            3567777  889988887774 7999999999877665443233   321 11  34444322333333221 1379999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +.+.|
T Consensus        81 i~nAG   85 (275)
T PRK06940         81 VHTAG   85 (275)
T ss_pred             EECCC
Confidence            99887

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=95.00  E-value=1  Score=33.20  Aligned_cols=97  Identities=16%  Similarity=0.151  Sum_probs=64.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhCC-CCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYFP-DGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~-~~~d~vi  108 (223)
                      .++.+||-. .|.|..+..+++.. +.+|++++.+++..+.+++.+   +...+- .... +..+.+..... +.+|.|+
T Consensus        39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~-~~~~-d~~~~l~~~~~~~~~D~V~  116 (202)
T PRK00121         39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLR-LLCG-DAVEVLLDMFPDGSLDRIY  116 (202)
T ss_pred             CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEE-EEec-CHHHHHHHHcCccccceEE
Confidence            556777777 88899999998876 469999999999888776332   332221 1112 33234433333 3688886


Q ss_pred             cCCC---------------hHHHHHHHHhhccCcEEEEEc
Q 043295          109 DNVG---------------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       109 d~~g---------------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      -...               ...+..+.+.|+++|.++...
T Consensus       117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence            4221               235778889999999998764

>PLN03139 formate dehydrogenase; Provisional

Probab=94.99  E-value=0.2  Score=40.76  Aligned_cols=86  Identities=24%  Similarity=0.178  Sum_probs=52.1

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .|++|.|.  |.+|...++.++..|.+|++.+++....+... +.|+..+    +  ++.+.+.+     .|+|+-+...
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-~~g~~~~----~--~l~ell~~-----sDvV~l~lPl  265 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-ETGAKFE----E--DLDAMLPK-----CDVVVINTPL  265 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-hcCceec----C--CHHHHHhh-----CCEEEEeCCC
Confidence            46788888  99999999999999999999887643333333 4443211    1  23333222     5666555542


Q ss_pred             -H-H----HHHHHHhhccCcEEEEEc
Q 043295          114 -E-M----LEAAVANMNLFGRVAACG  133 (223)
Q Consensus       114 -~-~----~~~~~~~l~~~G~~v~~g  133 (223)
                       + +    -...+..|+++..+|.++
T Consensus       266 t~~T~~li~~~~l~~mk~ga~lIN~a  291 (386)
T PLN03139        266 TEKTRGMFNKERIAKMKKGVLIVNNA  291 (386)
T ss_pred             CHHHHHHhCHHHHhhCCCCeEEEECC
Confidence             1 1    123455666666666554

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=94.97  E-value=1.2  Score=34.94  Aligned_cols=105  Identities=15%  Similarity=0.208  Sum_probs=68.3

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh-CC---CeeeecCCccc---HHHHHHHhCCC-C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL-GF---DDAFNYKEETD---LKATLKRYFPD-G  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~-g~---~~~~~~~~~~~---~~~~i~~~~~~-~  103 (223)
                      .+++.|+|+   ++.|..++.-+...|.+|++.|..++..+.++.+. ..   +..+|-.++++   ..+.+++..++ |
T Consensus        27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~g  106 (322)
T KOG1610|consen   27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGEDG  106 (322)
T ss_pred             cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhccccc
Confidence            566779999   89999988888889999999997777666665232 11   12244444312   33445566666 7


Q ss_pred             ccEEEcCCC-h--------------------------HHHHHHHHhhc-cCcEEEEEccccccc
Q 043295          104 IDVYFDNVG-G--------------------------EMLEAAVANMN-LFGRVAACGVISECA  139 (223)
Q Consensus       104 ~d~vid~~g-~--------------------------~~~~~~~~~l~-~~G~~v~~g~~~~~~  139 (223)
                      .--++++.| .                          ......+.+++ ..||+|.++...+..
T Consensus       107 LwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~  170 (322)
T KOG1610|consen  107 LWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRV  170 (322)
T ss_pred             ceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCc
Confidence            777788777 1                          01122334554 569999999877643

>PLN02823 spermine synthase

Probab=94.97  E-value=1.1  Score=35.88  Aligned_cols=96  Identities=22%  Similarity=0.270  Sum_probs=61.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCC-eeee-cC----CcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFD-DAFN-YK----EETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~-~~~~-~~----~~~~~~~~i~~~~~~~~d~  106 (223)
                      ...++|||. ||-|..+.++++..+. +|+++..+++-.+.+++.++.. ..++ .+    .. +-...++. .++.+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~-Da~~~L~~-~~~~yDv  179 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIN-DARAELEK-RDEKFDV  179 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEC-hhHHHHhh-CCCCccE
Confidence            456799999 8889888888887655 8999999998888888444321 1111 10    11 23334432 3347998


Q ss_pred             EE-cCCC----h--------HHHH-HHHHhhccCcEEEEE
Q 043295          107 YF-DNVG----G--------EMLE-AAVANMNLFGRVAAC  132 (223)
Q Consensus       107 vi-d~~g----~--------~~~~-~~~~~l~~~G~~v~~  132 (223)
                      || |+..    +        +-+. .+.+.|+++|.++.-
T Consensus       180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            85 4321    1        2355 678899999998754

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=94.97  E-value=0.36  Score=40.01  Aligned_cols=95  Identities=20%  Similarity=0.262  Sum_probs=62.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHH---hhCCC-eeeecCCcccHHHHHHHhCC-CCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKE---KLGFD-DAFNYKEETDLKATLKRYFP-DGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~---~~g~~-~~~~~~~~~~~~~~i~~~~~-~~~d~v  107 (223)
                      ++|++||=. .+.|..+..+++..+ .+|++++.+++..+.+++   .+|.. .++..+-. +    ...... +.||.|
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~-~----~~~~~~~~~fD~V  317 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDAR-D----PAQWWDGQPFDRI  317 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcc-c----chhhcccCCCCEE
Confidence            788888777 788888888888775 699999999998877753   23443 22221111 1    111112 369988


Q ss_pred             E-c--CCCh--------------------------HHHHHHHHhhccCcEEEEEcc
Q 043295          108 F-D--NVGG--------------------------EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       108 i-d--~~g~--------------------------~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      + |  |+|.                          ..+..++..|++||+++....
T Consensus       318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            6 3  3331                          245677889999999987653

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=94.95  E-value=0.3  Score=34.03  Aligned_cols=96  Identities=20%  Similarity=0.258  Sum_probs=63.0

Q ss_pred             CCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           36 KGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        36 ~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      ++.+||=. .|.|.....+++..  +.++++++.+++-.+.+++   +++.+.+--...  ++.+ +.+...+.+|+|+.
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~--d~~~-l~~~~~~~~D~I~~   79 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQG--DIED-LPQELEEKFDIIIS   79 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEES--BTTC-GCGCSSTTEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEe--ehhc-cccccCCCeeEEEE
Confidence            45666666 88999999999644  6799999999998888773   356653211111  2222 22111146999987


Q ss_pred             CC-----Ch--HHHHHHHHhhccCcEEEEEcc
Q 043295          110 NV-----GG--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       110 ~~-----g~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      ..     ..  ..++...++++++|.++....
T Consensus        80 ~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~  111 (152)
T PF13847_consen   80 NGVLHHFPDPEKVLKNIIRLLKPGGILIISDP  111 (152)
T ss_dssp             ESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCchhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence            53     22  257788999999999987654

...

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=94.94  E-value=0.14  Score=38.98  Aligned_cols=76  Identities=17%  Similarity=0.136  Sum_probs=46.9

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCC--ee--eecCCcccHHHHHHHhCC--CC
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFD--DA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~--~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      ++++||.   |++|...++.....|++|+.++++..+.+.+.+++    +..  ..  .|..+.++....+.+...  ++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4678999   79999999888888999999998877654443222    211  11  233332122222222211  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++.+.|
T Consensus        82 id~vv~~ag   90 (259)
T PRK12384         82 VDLLVYNAG   90 (259)
T ss_pred             CCEEEECCC
Confidence            899999886

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=94.94  E-value=0.043  Score=42.87  Aligned_cols=104  Identities=20%  Similarity=0.199  Sum_probs=63.8

Q ss_pred             hHHHHHHHHh---hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHH---hhCCCeeee-cCCcccHHHH
Q 043295           25 TAYVGFYEIS---QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKE---KLGFDDAFN-YKEETDLKAT   95 (223)
Q Consensus        25 ta~~~l~~~~---~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~---~~g~~~~~~-~~~~~~~~~~   95 (223)
                      |-..+|..+.   .+|++||=. .|.|..++-.++ +|+ +|++++-.+.-.+.+++   ..|...-+. .... +    
T Consensus       147 TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~-~----  220 (295)
T PF06325_consen  147 TTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE-D----  220 (295)
T ss_dssp             HHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS-C----
T ss_pred             HHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec-c----
Confidence            3334444444   788998888 788887776666 487 89999988776555542   233322111 1111 1    


Q ss_pred             HHHhCCCCccEEEcCCChHH----HHHHHHhhccCcEEEEEccccc
Q 043295           96 LKRYFPDGIDVYFDNVGGEM----LEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus        96 i~~~~~~~~d~vid~~g~~~----~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                         ...+.||+|+-.+-.+.    .....++++++|.++..|....
T Consensus       221 ---~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~  263 (295)
T PF06325_consen  221 ---LVEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEE  263 (295)
T ss_dssp             ---TCCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGG
T ss_pred             ---cccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHH
Confidence               11247999998887653    3344568899999999998764

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.93  E-value=0.39  Score=37.30  Aligned_cols=91  Identities=14%  Similarity=0.075  Sum_probs=65.7

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE--C-chHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS--G-AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~--g-~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      -.||+....+..|....  -.|++++|.  | .+|.-++++....|++|+...+.-                    . ++
T Consensus       138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------------~-~l  196 (285)
T PRK10792        138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------------K-NL  196 (285)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------------C-CH
Confidence            35666666677776666  579999999  4 599999999999999998765321                    1 23


Q ss_pred             HHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .+.+++     .|+++.++|.+.+- .-+.++++..++.+|..
T Consensus       197 ~~~~~~-----ADIvi~avG~p~~v-~~~~vk~gavVIDvGin  233 (285)
T PRK10792        197 RHHVRN-----ADLLVVAVGKPGFI-PGEWIKPGAIVIDVGIN  233 (285)
T ss_pred             HHHHhh-----CCEEEEcCCCcccc-cHHHcCCCcEEEEcccc
Confidence            333333     89999999975432 23778999999999854

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=94.91  E-value=0.27  Score=40.39  Aligned_cols=72  Identities=22%  Similarity=0.362  Sum_probs=45.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-ee--eecCCcccHHHHHHHhCCCCccEEEc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DA--FNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~--~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      ++++++|.   |++|.+.++.....|++|+++++++++.+...+..+.. ..  .|..+.    +.+.+.. +++|+++.
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~----~~v~~~l-~~IDiLIn  251 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQE----AALAELL-EKVDILII  251 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCH----HHHHHHh-CCCCEEEE
Confidence            57899999   88999999888888999999998876654322111111 11  233332    2233332 25999998


Q ss_pred             CCC
Q 043295          110 NVG  112 (223)
Q Consensus       110 ~~g  112 (223)
                      +.|
T Consensus       252 nAG  254 (406)
T PRK07424        252 NHG  254 (406)
T ss_pred             CCC
Confidence            776

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.91  E-value=0.18  Score=38.54  Aligned_cols=77  Identities=19%  Similarity=0.247  Sum_probs=46.1

Q ss_pred             CCCEEEEE-C----chHHHHHHHHHHcCCeEEEEecCH--HHHHHHHHhhCCC---eeeecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS-G----AYGHLVGQYAKLGGCYVVGSAGTN--EKVAILKEKLGFD---DAFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~-g----~vG~~a~qla~~~g~~v~~~~~~~--~~~~~~~~~~g~~---~~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .+++++|+ +    ++|.+.++.....|++|+.++++.  +..+.+.++++..   ...|-.+.++..+.+.+...  ++
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g~   85 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVDG   85 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            46788888 4    788888888788899999988653  3344444344431   11333333122222222221  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        86 iD~li~nAG   94 (256)
T PRK07889         86 LDGVVHSIG   94 (256)
T ss_pred             CcEEEEccc
Confidence            999998776

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=94.90  E-value=0.77  Score=38.32  Aligned_cols=95  Identities=21%  Similarity=0.220  Sum_probs=61.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCC-CccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPD-GIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~-~~d~v  107 (223)
                      .+|++||=. .+.|..+..+++..  +.+|++++.++++.+.+++   .+|.+.+ ..... +..    ..... .||.|
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v-~~~~~-Da~----~~~~~~~fD~V  322 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITII-ETIEG-DAR----SFSPEEQPDAI  322 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeE-EEEeC-ccc----ccccCCCCCEE
Confidence            678888777 77788777777765  3599999999998876653   3465432 11111 111    11122 69988


Q ss_pred             E-c--CCCh--------------------------HHHHHHHHhhccCcEEEEEccc
Q 043295          108 F-D--NVGG--------------------------EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       108 i-d--~~g~--------------------------~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      + |  |+|.                          ..+..++..|++||+++.....
T Consensus       323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs  379 (445)
T PRK14904        323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS  379 (445)
T ss_pred             EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            6 4  5442                          1356777899999999986643

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.89  E-value=0.79  Score=34.60  Aligned_cols=101  Identities=17%  Similarity=0.190  Sum_probs=57.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC-HHHHH----HHHHhhCCC-ee--eecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT-NEKVA----ILKEKLGFD-DA--FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~-~~~~~----~~~~~~g~~-~~--~~~~~~~~~~~~i~~~~~--~  102 (223)
                      .+.++||.   |++|...++-....|++|+.++++ ..+..    .++ ..+.. ..  .|..+.+++...+.+...  +
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVK-ENGGEGIGVLADVSTREGCETLAKATIDRYG   83 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHH-HcCCeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence            35789999   889998888777899998776643 22222    222 23322 11  233333122222332221  3


Q ss_pred             CccEEEcCCCh-----------HH---------------HHHHHHhhccCcEEEEEccccc
Q 043295          103 GIDVYFDNVGG-----------EM---------------LEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       103 ~~d~vid~~g~-----------~~---------------~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      ++|++|.+.|.           +.               .+.+...++..|+++.++....
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~  144 (252)
T PRK06077         84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAG  144 (252)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhc
Confidence            68999998872           00               1123445566789998887554

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=94.88  E-value=0.26  Score=37.21  Aligned_cols=96  Identities=20%  Similarity=0.255  Sum_probs=59.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHhh---CCCee--eecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEKL---GFDDA--FNYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~~---g~~~~--~~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      ++|++||=. +|.|..+..+++..+  .+|++++-++.-++.++++.   +...+  +..+.. ++.     +.++-+|+
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~-~lp-----~~d~sfD~  119 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAE-DLP-----FPDNSFDA  119 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTT-B-------S-TT-EEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHH-Hhc-----CCCCceeE
Confidence            788888888 899999999999875  59999999999888777432   22222  111111 110     11125999


Q ss_pred             EEcCCCh-------HHHHHHHHhhccCcEEEEEcccc
Q 043295          107 YFDNVGG-------EMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       107 vid~~g~-------~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      |.-+.|=       ..+....+.|+|||+++.+....
T Consensus       120 v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~  156 (233)
T PF01209_consen  120 VTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK  156 (233)
T ss_dssp             EEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             EEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence            9866652       25788999999999998877543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.87  E-value=0.15  Score=39.66  Aligned_cols=73  Identities=11%  Similarity=-0.084  Sum_probs=48.5

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCC-eeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFD-DAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      ++++++|.  |+.|.+++..+...|+ +|+.+.|+.++.+.+.+.++.. .+....    ..+.+.... ..+|+||+|+
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~----~~~~~~~~~-~~~DiVInaT  198 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE----GDSGGLAIE-KAAEVLVSTV  198 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc----chhhhhhcc-cCCCEEEECC
Confidence            46789999  9999999998889998 7999999988877766455421 111111    101111111 2589999998


Q ss_pred             Ch
Q 043295          112 GG  113 (223)
Q Consensus       112 g~  113 (223)
                      ..
T Consensus       199 p~  200 (282)
T TIGR01809       199 PA  200 (282)
T ss_pred             CC
Confidence            74

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=94.87  E-value=0.19  Score=39.56  Aligned_cols=58  Identities=21%  Similarity=0.276  Sum_probs=46.7

Q ss_pred             hHHHHHHHHh-----hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEec---CHHHHHHHHHhhCCCee
Q 043295           25 TAYVGFYEIS-----QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG---TNEKVAILKEKLGFDDA   83 (223)
Q Consensus        25 ta~~~l~~~~-----~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~---~~~~~~~~~~~~g~~~~   83 (223)
                      -||.++..+-     .||.++||-   |..|...+-+|+..|++++.+..   +.+|...++ .+|+.-+
T Consensus        86 ia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~-a~Gaeii  154 (362)
T KOG1252|consen   86 IAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLR-ALGAEII  154 (362)
T ss_pred             HHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHH-HcCCEEE
Confidence            4566665554     889999999   99999999999999999988873   456778888 8998655

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=94.87  E-value=1.2  Score=34.33  Aligned_cols=96  Identities=17%  Similarity=0.146  Sum_probs=61.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      ++|++||=. .+.|..+..++...+  .+|++++.++.+.+.+++   .+|...+.-...  +.. .+... .+.+|.|+
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~--D~~-~~~~~-~~~fD~Vl  145 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNF--DGR-VFGAA-VPKFDAIL  145 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecC--CHH-Hhhhh-ccCCCEEE
Confidence            788887777 788888888888763  489999999998877763   345543221111  211 11111 12589886


Q ss_pred             -c--CCCh--------------------------HHHHHHHHhhccCcEEEEEcc
Q 043295          109 -D--NVGG--------------------------EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 -d--~~g~--------------------------~~~~~~~~~l~~~G~~v~~g~  134 (223)
                       |  |+|.                          +.+..++.++++||+++....
T Consensus       146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc  200 (264)
T TIGR00446       146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC  200 (264)
T ss_pred             EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence             4  3432                          145567889999999986654

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=94.85  E-value=1  Score=32.59  Aligned_cols=92  Identities=14%  Similarity=0.217  Sum_probs=60.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .++.+||=. +|.|..+..+++.. +.+|++++.+++..+.+++   .++...+ ..... +...    ...+.+|+|+.
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i-~~~~~-d~~~----~~~~~~D~v~~  103 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNI-DIIPG-EAPI----ELPGKADAIFI  103 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCe-EEEec-Cchh----hcCcCCCEEEE
Confidence            677887777 78899999998876 4699999999987776653   2343222 11111 1111    11236999885


Q ss_pred             CCC-h---HHHHHHHHhhccCcEEEEE
Q 043295          110 NVG-G---EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       110 ~~g-~---~~~~~~~~~l~~~G~~v~~  132 (223)
                      ... .   ..+..+.+.|+++|+++..
T Consensus       104 ~~~~~~~~~~l~~~~~~Lk~gG~lv~~  130 (187)
T PRK08287        104 GGSGGNLTAIIDWSLAHLHPGGRLVLT  130 (187)
T ss_pred             CCCccCHHHHHHHHHHhcCCCeEEEEE
Confidence            332 1   3567788999999998764

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.84  E-value=0.17  Score=38.74  Aligned_cols=77  Identities=13%  Similarity=0.246  Sum_probs=45.8

Q ss_pred             CCCEEEEE-C----chHHHHHHHHHHcCCeEEEEecC---HHHHHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS-G----AYGHLVGQYAKLGGCYVVGSAGT---NEKVAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~-g----~vG~~a~qla~~~g~~v~~~~~~---~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .+++++|. +    ++|.+.++.....|++|+.+.+.   +++.+.+.++++....  .|-.+.++....+.+...  ++
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDG   84 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCC
Confidence            46788888 2    68999888888899999887543   3333333324443222  333333233333333322  37


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        85 iD~lvnnAG   93 (260)
T PRK06997         85 LDGLVHSIG   93 (260)
T ss_pred             CcEEEEccc
Confidence            999998876

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.84  E-value=0.15  Score=40.85  Aligned_cols=73  Identities=22%  Similarity=0.296  Sum_probs=46.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC----Cee-eecCCcccHHHHHHHhCCC-CccE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF----DDA-FNYKEETDLKATLKRYFPD-GIDV  106 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~----~~~-~~~~~~~~~~~~i~~~~~~-~~d~  106 (223)
                      ++++|||+   |.+|..+++.....|.+|++++++........+.++.    ..+ .|-.+    .+.+.+...+ ++|+
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~----~~~~~~~~~~~~~d~   78 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRD----AAKLRKAIAEFKPEI   78 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCC----HHHHHHHHhhcCCCE
Confidence            46889999   7899999998888999999998766543222112221    111 12222    2233444434 6899


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ||.+.+
T Consensus        79 vih~A~   84 (349)
T TIGR02622        79 VFHLAA   84 (349)
T ss_pred             EEECCc
Confidence            999887

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK08264 short chain dehydrogenase; Validated

Probab=94.82  E-value=0.18  Score=37.86  Aligned_cols=74  Identities=18%  Similarity=0.191  Sum_probs=46.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCe-eeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDD-AFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .+.+++|.   |++|..+++.+...|+ +|+.++++.++.+. . ..++.. ..|..+.+++.+.+...  +.+|++|.+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~--~~id~vi~~   80 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-L-GPRVVPLQLDVTDPASVAAAAEAA--SDVTILVNN   80 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-c-CCceEEEEecCCCHHHHHHHHHhc--CCCCEEEEC
Confidence            46788999   8999999998888999 99999988766442 1 111111 12333331222222221  258999988


Q ss_pred             CCh
Q 043295          111 VGG  113 (223)
Q Consensus       111 ~g~  113 (223)
                      .|.
T Consensus        81 ag~   83 (238)
T PRK08264         81 AGI   83 (238)
T ss_pred             CCc
Confidence            875

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=94.82  E-value=0.14  Score=44.98  Aligned_cols=77  Identities=21%  Similarity=0.310  Sum_probs=49.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCCe----eeecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFDD----AFNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~~----~~~~~~~~~~~~~i~~~~~--~  102 (223)
                      .++++||+   |++|.+.++.....|++|+.++++.++.+.+.+++    +...    ..|-.+.+++.+.+.+...  +
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g  492 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYG  492 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            36789999   89999999888888999999999887665543232    3211    1233333123333333221  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++.+.|
T Consensus       493 ~iDilV~nAG  502 (676)
T TIGR02632       493 GVDIVVNNAG  502 (676)
T ss_pred             CCcEEEECCC
Confidence            6999999887

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=94.82  E-value=0.12  Score=38.53  Aligned_cols=98  Identities=16%  Similarity=0.109  Sum_probs=60.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeec-------CCc--ccHHHHHHHhCC---
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNY-------KEE--TDLKATLKRYFP---  101 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~--~~~~~~i~~~~~---  101 (223)
                      .++.+|||- .|-|.-+.-+|.. |.+|++++-++.-.+.+.++.+.......       ...  +=+...+-+.+.   
T Consensus        36 ~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~  114 (218)
T PF05724_consen   36 KPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV  114 (218)
T ss_dssp             STSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred             CCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence            777899999 7888888888864 99999999999988877434443111100       000  000001111111   


Q ss_pred             CCccEEEcCCC---------hHHHHHHHHhhccCcEEEEEc
Q 043295          102 DGIDVYFDNVG---------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       102 ~~~d~vid~~g---------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |.||.|+|+..         ..+......+|+++|++.++.
T Consensus       115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~  155 (218)
T PF05724_consen  115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT  155 (218)
T ss_dssp             HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            26999999753         136778888999999944443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=94.78  E-value=0.59  Score=37.91  Aligned_cols=93  Identities=16%  Similarity=0.092  Sum_probs=57.8

Q ss_pred             CEEEEE---CchHHHHHHHHHHc--CCeEEEEe--cCHHHHHHHHHhhCCCeeeecCCcccHHHHH--------------
Q 043295           38 EKVFVS---GAYGHLVGQYAKLG--GCYVVGSA--GTNEKVAILKEKLGFDDAFNYKEETDLKATL--------------   96 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~--g~~v~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i--------------   96 (223)
                      ++|.|.   |++|..++++.+..  ..+|++.+  ++.+++....++++..++.-.++  .....+              
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~--~~~~~l~~~l~~~~~~v~~G   79 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADE--EAAKELKEALAAAGIEVLAG   79 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH--HHHHHHHHhhccCCceEEEC
Confidence            456677   77888888777655  45777775  33444444433777766543332  112222              


Q ss_pred             ----HHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEE
Q 043295           97 ----KRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus        97 ----~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~  132 (223)
                          .+.... .+|+|+.+++| ..+...+..++.|-++.+.
T Consensus        80 ~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLA  121 (385)
T PRK05447         80 EEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALA  121 (385)
T ss_pred             hhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEe
Confidence                222223 58999999987 5678888888888776654

>PRK14967 putative methyltransferase; Provisional

Probab=94.77  E-value=1.3  Score=33.21  Aligned_cols=92  Identities=20%  Similarity=0.113  Sum_probs=59.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .++++||-. .|.|..+..+++. |. +|++++.++...+.+++   ..+....+.  .. ++.+.+   ..+.+|+|+.
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~--~~-d~~~~~---~~~~fD~Vi~  107 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVR--RG-DWARAV---EFRPFDVVVS  107 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEE--EC-chhhhc---cCCCeeEEEE
Confidence            678888888 6779998888875 55 99999999987776652   233321121  11 332221   2237999886


Q ss_pred             CCC---------------------h-------HHHHHHHHhhccCcEEEEEc
Q 043295          110 NVG---------------------G-------EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       110 ~~g---------------------~-------~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ...                     .       ..+..+.+.|+++|+++.+.
T Consensus       108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~  159 (223)
T PRK14967        108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ  159 (223)
T ss_pred             CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            421                     0       12445778999999998764

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=94.77  E-value=0.091  Score=37.02  Aligned_cols=76  Identities=14%  Similarity=0.251  Sum_probs=44.9

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCC-eEEEEecC--HHHHHHHHHh---hCCCe-e--eecCCcccHHHHHHHhC--CCC
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGC-YVVGSAGT--NEKVAILKEK---LGFDD-A--FNYKEETDLKATLKRYF--PDG  103 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~-~v~~~~~~--~~~~~~~~~~---~g~~~-~--~~~~~~~~~~~~i~~~~--~~~  103 (223)
                      ++++|+   +++|...++.....|. +|+.+.++  .++.+.+..+   .+... +  .|..+.++....+.+..  .+.
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            468888   8999988877777766 78888888  4444434223   34311 1  23333323333333333  127


Q ss_pred             ccEEEcCCCh
Q 043295          104 IDVYFDNVGG  113 (223)
Q Consensus       104 ~d~vid~~g~  113 (223)
                      +|++|.+.|.
T Consensus        81 ld~li~~ag~   90 (167)
T PF00106_consen   81 LDILINNAGI   90 (167)
T ss_dssp             ESEEEEECSC
T ss_pred             cccccccccc
Confidence            9999988873

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=94.77  E-value=0.33  Score=36.62  Aligned_cols=77  Identities=17%  Similarity=0.212  Sum_probs=48.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC-ee--eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD-DA--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      +++++||+   |++|...++.....|++|+.++++.++.+.+.+.+   +.. ..  .|..+.+.+.+.+.....  +++
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   81 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46789999   89999999888888999999998887655443222   221 11  233332122222322221  268


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |++|.+.|
T Consensus        82 d~vi~~ag   89 (250)
T TIGR03206        82 DVLVNNAG   89 (250)
T ss_pred             CEEEECCC
Confidence            99998886

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=94.77  E-value=1  Score=32.05  Aligned_cols=120  Identities=15%  Similarity=0.000  Sum_probs=84.9

Q ss_pred             hhhccccchhhHHHHHHHHh-hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           15 FANGAGTSGFTAYVGFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      -.|-+|.+-.+|-.+...++ +.|..|+=. -+.|-..-.+.+..-  ..++++..+.+-...+.+.+...++++.+.. 
T Consensus        26 VGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~-  104 (194)
T COG3963          26 VGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAF-  104 (194)
T ss_pred             eeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchh-
Confidence            34667777778877777777 888888888 456665555555432  3788999888877777755665667765544 


Q ss_pred             cHHHHHHHhCCCCccEEEcCCCh---------HHHHHHHHhhccCcEEEEEccc
Q 043295           91 DLKATLKRYFPDGIDVYFDNVGG---------EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus        91 ~~~~~i~~~~~~~~d~vid~~g~---------~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      ++...+.+..+.-+|.|+.++.-         ..++..+..+..||.++.+...
T Consensus       105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            44444555554589999988752         2577888899999999988754

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.76  E-value=0.17  Score=38.33  Aligned_cols=76  Identities=16%  Similarity=0.207  Sum_probs=47.1

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhC--CCCcc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYF--PDGID  105 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~--~~~~d  105 (223)
                      ++++||.   |++|...+......|++|++++++.++.+.+.+.+   +...   ..|..+.+++...+....  -+++|
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   80 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD   80 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            3578888   89999888887788999999999887766554222   2211   124443312322222221  12589


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      ++|.+.+
T Consensus        81 ~vi~~a~   87 (255)
T TIGR01963        81 ILVNNAG   87 (255)
T ss_pred             EEEECCC
Confidence            8887775

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=94.74  E-value=0.27  Score=38.21  Aligned_cols=89  Identities=13%  Similarity=0.005  Sum_probs=58.4

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCe----eeecCCcccHHHHHHHhCCC-CccE
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDD----AFNYKEETDLKATLKRYFPD-GIDV  106 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~i~~~~~~-~~d~  106 (223)
                      .++++++|.  ||.+.+++.-++..|+ +++.+-|+.++.+.+.+.++...    .....+.          ... .+|+
T Consensus       124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~----------~~~~~~dl  193 (283)
T COG0169         124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADL----------EGLEEADL  193 (283)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccccccccc----------ccccccCE
Confidence            347899999  9999999999999997 89999999998777764554311    1111111          001 3899


Q ss_pred             EEcCCChH--H-----HHHHHHhhccCcEEEEEcc
Q 043295          107 YFDNVGGE--M-----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       107 vid~~g~~--~-----~~~~~~~l~~~G~~v~~g~  134 (223)
                      +++|+.-.  .     .-. ..++++.-.+..+-.
T Consensus       194 iINaTp~Gm~~~~~~~~~~-~~~l~~~~~v~D~vY  227 (283)
T COG0169         194 LINATPVGMAGPEGDSPVP-AELLPKGAIVYDVVY  227 (283)
T ss_pred             EEECCCCCCCCCCCCCCCc-HHhcCcCCEEEEecc
Confidence            99988631  1     111 456666666666543

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.74  E-value=0.26  Score=38.53  Aligned_cols=55  Identities=24%  Similarity=0.248  Sum_probs=37.3

Q ss_pred             hhHHHHHHHHh------hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCH---HHHHHHHHhh
Q 043295           24 FTAYVGFYEIS------QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTN---EKVAILKEKL   78 (223)
Q Consensus        24 ~ta~~~l~~~~------~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~---~~~~~~~~~~   78 (223)
                      -|-+.++.+.-      .++++++|.  |+.|.+++..+...|++ |+.+.++.   ++.+.+.+++
T Consensus       107 NTD~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l  173 (289)
T PRK12548        107 ITDGLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKI  173 (289)
T ss_pred             ecCHHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHH
Confidence            44555544432      347789999  89999888888888995 99999885   4444433244

>PRK05650 short chain dehydrogenase; Provisional

Probab=94.73  E-value=0.21  Score=38.36  Aligned_cols=74  Identities=20%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhCC--CCccEE
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      +++|.   |++|...++.....|++|+.++++.++.+.+.+.+   +... +  .|..+..++.+.+.....  +++|++
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~l   81 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVI   81 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            67888   89999988888888999999998887655443222   2221 1  233222122222222211  369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      |.+.|
T Consensus        82 I~~ag   86 (270)
T PRK05650         82 VNNAG   86 (270)
T ss_pred             EECCC
Confidence            99887

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=94.71  E-value=0.26  Score=37.70  Aligned_cols=77  Identities=21%  Similarity=0.276  Sum_probs=46.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEec-CHHHHHHHHHh----hCCC-ee--eecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-TNEKVAILKEK----LGFD-DA--FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-~~~~~~~~~~~----~g~~-~~--~~~~~~~~~~~~i~~~~~--~  102 (223)
                      ++++++|.   +++|.+.++.....|++|+.+.+ ++++.+.+.++    .+.. ..  .|-.+.++..+.+.+...  +
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   86 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDFD   86 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            57899999   89999999888889999988764 34443332212    2321 11  233333123333332222  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      .+|+++.+.|
T Consensus        87 ~id~lv~nAg   96 (260)
T PRK08416         87 RVDFFISNAI   96 (260)
T ss_pred             CccEEEECcc
Confidence            6899998875

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.70  E-value=0.27  Score=37.57  Aligned_cols=77  Identities=12%  Similarity=0.122  Sum_probs=46.3

Q ss_pred             CCCEEEEE--C---chHHHHHHHHHHcCCeEEEEecCH---HHHHHHHHhhCCCe----eeecCCcccHHHHHHHhCC--
Q 043295           36 KGEKVFVS--G---AYGHLVGQYAKLGGCYVVGSAGTN---EKVAILKEKLGFDD----AFNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        36 ~g~~vlI~--g---~vG~~a~qla~~~g~~v~~~~~~~---~~~~~~~~~~g~~~----~~~~~~~~~~~~~i~~~~~--  101 (223)
                      .+++++|+  +   ++|.++++.....|++|+.++++.   ++.+.+.+++....    ..|-.+.++....+.+...  
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   85 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV   85 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence            46788999  3   799998888888999999887543   34444443442111    1344333233333333322  


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|+++++.|
T Consensus        86 g~ld~lv~nag   96 (257)
T PRK08594         86 GVIHGVAHCIA   96 (257)
T ss_pred             CCccEEEECcc
Confidence            36999988775

>PRK14968 putative methyltransferase; Provisional

Probab=94.67  E-value=0.25  Score=35.56  Aligned_cols=40  Identities=30%  Similarity=0.231  Sum_probs=34.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHH
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK   75 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~   75 (223)
                      .+++++|-. ++.|..+..+++. +.++++++.+++..+.++
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~   62 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAK   62 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHH
Confidence            677888888 8889999998887 899999999988777665

>PRK06101 short chain dehydrogenase; Provisional

Probab=94.67  E-value=0.45  Score=35.86  Aligned_cols=38  Identities=13%  Similarity=0.187  Sum_probs=31.5

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHH
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK   75 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~   75 (223)
                      .+++|.   |++|...+......|++|+.+++++++.+.+.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~   42 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELH   42 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence            467888   89998888777778999999999988877665

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=94.67  E-value=0.29  Score=38.76  Aligned_cols=85  Identities=13%  Similarity=0.055  Sum_probs=53.5

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .|++|.|.  |.+|...++.++..|.+|++..++.++.+      +.....  ... ++.+.+.+     .|+|+.+...
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~------~~~~~~--~~~-~l~e~l~~-----aDvvv~~lPl  200 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP------GVQSFA--GRE-ELSAFLSQ-----TRVLINLLPN  200 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC------Cceeec--ccc-cHHHHHhc-----CCEEEECCCC
Confidence            46789999  99999999999999999999886543311      111111  111 33333322     6777776653


Q ss_pred             -HH-----HHHHHHhhccCcEEEEEcc
Q 043295          114 -EM-----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       114 -~~-----~~~~~~~l~~~G~~v~~g~  134 (223)
                       +.     -...+..|++++.+|.+|-
T Consensus       201 t~~T~~li~~~~l~~mk~ga~lIN~aR  227 (312)
T PRK15469        201 TPETVGIINQQLLEQLPDGAYLLNLAR  227 (312)
T ss_pred             CHHHHHHhHHHHHhcCCCCcEEEECCC
Confidence             21     1345667777777777663

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=94.65  E-value=0.88  Score=38.17  Aligned_cols=98  Identities=19%  Similarity=0.228  Sum_probs=63.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      ++|++||=. .+-|.-..++|..++  ..|++.+.++.+...+++   .+|...+...+.  +. ..+....++.||.|+
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~--D~-~~~~~~~~~~fD~IL  188 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHF--DG-RVFGAALPETFDAIL  188 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC--ch-hhhhhhchhhcCeEE
Confidence            789988877 777888888888874  389999999998766642   568765432221  11 112222233588775


Q ss_pred             -c--CCCh--------------------------HHHHHHHHhhccCcEEEEEccc
Q 043295          109 -D--NVGG--------------------------EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       109 -d--~~g~--------------------------~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                       |  |+|.                          ..+..++..|++||++|....+
T Consensus       189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence             5  5542                          1234567899999999876543

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.64  E-value=0.37  Score=37.52  Aligned_cols=75  Identities=16%  Similarity=0.129  Sum_probs=52.5

Q ss_pred             hCCCEEEEE--Cc-hHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           35 QKGEKVFVS--GA-YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~--g~-vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      -.|++++|.  |+ +|...+.++...|++|+...+..   .                  ++.+.+     ..+|+++.++
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t---~------------------~L~~~~-----~~aDIvI~At  210 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT---Q------------------NLPELV-----KQADIIVGAV  210 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc---h------------------hHHHHh-----ccCCEEEEcc
Confidence            678999999  76 99999999999999777655311   1                  111111     1389999999


Q ss_pred             ChHHHHHHHHhhccCcEEEEEcccc
Q 043295          112 GGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       112 g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      |.+.+ -..+.++++..++.+|...
T Consensus       211 G~~~~-v~~~~lk~gavViDvg~n~  234 (283)
T PRK14192        211 GKPEL-IKKDWIKQGAVVVDAGFHP  234 (283)
T ss_pred             CCCCc-CCHHHcCCCCEEEEEEEee
Confidence            86432 2235689999999988654

>PRK06141 ornithine cyclodeaminase; Validated

Probab=94.64  E-value=0.23  Score=39.37  Aligned_cols=91  Identities=15%  Similarity=0.111  Sum_probs=56.4

Q ss_pred             hCCCEEEEE--CchHHHHHHHHH-HcCC-eEEEEecCHHHHHHHHHhhCCC--eeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAK-LGGC-YVVGSAGTNEKVAILKEKLGFD--DAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~-~~g~-~v~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      ....+++|.  |..|...+.... ..+. +|+...+++++.+.+.+++...  .+....   +..+.++     +.|+|+
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~---~~~~av~-----~aDIVi  194 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVT---DLEAAVR-----QADIIS  194 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeC---CHHHHHh-----cCCEEE
Confidence            566788888  888888875433 3554 8999999988876665454221  111111   3333332     389999


Q ss_pred             cCCChH--HHHHHHHhhccCcEEEEEccc
Q 043295          109 DNVGGE--MLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       109 d~~g~~--~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .|+++.  .+.  .+.++++-.+..+|..
T Consensus       195 ~aT~s~~pvl~--~~~l~~g~~i~~ig~~  221 (314)
T PRK06141        195 CATLSTEPLVR--GEWLKPGTHLDLVGNF  221 (314)
T ss_pred             EeeCCCCCEec--HHHcCCCCEEEeeCCC
Confidence            888764  122  2467887766666643

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=94.63  E-value=1.5  Score=33.40  Aligned_cols=92  Identities=16%  Similarity=0.135  Sum_probs=60.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC-CeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF-DDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      .++.+||-. .|.|..+..+++ .|.+|++++.+++.++.++ +... ...+..    +.. .+ ...++.+|+|+....
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~~D~s~~~l~~a~-~~~~~~~~~~~----d~~-~~-~~~~~~fD~V~s~~~  112 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRE-RGSQVTALDLSPPMLAQAR-QKDAADHYLAG----DIE-SL-PLATATFDLAWSNLA  112 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHH-cCCeEEEEECCHHHHHHHH-hhCCCCCEEEc----Ccc-cC-cCCCCcEEEEEECch
Confidence            456788777 677877766665 5889999999999888888 4332 222211    111 11 111226999986442


Q ss_pred             -----h--HHHHHHHHhhccCcEEEEEcc
Q 043295          113 -----G--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 -----~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                           .  ..+..+.+.|+++|.++....
T Consensus       113 l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~  141 (251)
T PRK10258        113 VQWCGNLSTALRELYRVVRPGGVVAFTTL  141 (251)
T ss_pred             hhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence                 1  357788899999999987654

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=94.62  E-value=1.1  Score=36.36  Aligned_cols=92  Identities=17%  Similarity=0.151  Sum_probs=63.0

Q ss_pred             EEEEE-CchHHHHHHHHHHc-CC-eEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEE-EcCC
Q 043295           39 KVFVS-GAYGHLVGQYAKLG-GC-YVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVY-FDNV  111 (223)
Q Consensus        39 ~vlI~-g~vG~~a~qla~~~-g~-~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~v-id~~  111 (223)
                      +||=. +++|..++.+++.. |+ +|++.+.+++..+.+++.   .+...+.-...  +....+... ++.+|+| +|.-
T Consensus        47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~--Da~~~l~~~-~~~fDvIdlDPf  123 (374)
T TIGR00308        47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNE--DAANVLRYR-NRKFHVIDIDPF  123 (374)
T ss_pred             EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEch--hHHHHHHHh-CCCCCEEEeCCC
Confidence            55555 99999999999985 76 899999999988777642   23332211221  233333332 2369988 8998


Q ss_pred             Ch--HHHHHHHHhhccCcEEEEEc
Q 043295          112 GG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |.  +.++.++..++++|.+....
T Consensus       124 Gs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       124 GTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             CCcHHHHHHHHHhcccCCEEEEEe
Confidence            86  57888999999888776553

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>CHL00194 ycf39 Ycf39; Provisional

Probab=94.59  E-value=0.2  Score=39.68  Aligned_cols=91  Identities=19%  Similarity=0.202  Sum_probs=56.5

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee-ecCCcccHHHHHHHhCCCCccEEEcCCChH
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF-NYKEETDLKATLKRYFPDGIDVYFDNVGGE  114 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~~d~vid~~g~~  114 (223)
                      +|+|+   |.+|..+++.+...|.+|++.+++.++...+. ..+++.+. |..+.    +.+..... ++|+||++++..
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~-~~~v~~v~~Dl~d~----~~l~~al~-g~d~Vi~~~~~~   75 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK-EWGAELVYGDLSLP----ETLPPSFK-GVTAIIDASTSR   75 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh-hcCCEEEECCCCCH----HHHHHHHC-CCCEEEECCCCC
Confidence            68888   88999888888888999999999877655555 45553331 33332    12222222 589999987531


Q ss_pred             -----H--------HHHHHHhhccC--cEEEEEccc
Q 043295          115 -----M--------LEAAVANMNLF--GRVAACGVI  135 (223)
Q Consensus       115 -----~--------~~~~~~~l~~~--G~~v~~g~~  135 (223)
                           .        ....++.++..  .+++.++..
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~  111 (317)
T CHL00194         76 PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL  111 (317)
T ss_pred             CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence                 0        12233444433  378887764

>PRK07340 ornithine cyclodeaminase; Validated

Probab=94.57  E-value=0.24  Score=39.00  Aligned_cols=92  Identities=11%  Similarity=-0.037  Sum_probs=60.3

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHH-cCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKL-GGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~-~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      ....+++|.  |..|.+.++.... .+. +|....+++++.+.+.++++... +..... +..+.+.     +.|+|+.|
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~-~~~~~~-~~~~av~-----~aDiVita  195 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG-PTAEPL-DGEAIPE-----AVDLVVTA  195 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-CeeEEC-CHHHHhh-----cCCEEEEc
Confidence            556788888  8888888877654 565 78899999887766554553211 000011 3444443     49999999


Q ss_pred             CChH--HHHHHHHhhccCcEEEEEcccc
Q 043295          111 VGGE--MLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       111 ~g~~--~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      +.+.  .+. .+  +++|-.+..+|...
T Consensus       196 T~s~~Pl~~-~~--~~~g~hi~~iGs~~  220 (304)
T PRK07340        196 TTSRTPVYP-EA--ARAGRLVVAVGAFT  220 (304)
T ss_pred             cCCCCceeC-cc--CCCCCEEEecCCCC
Confidence            9863  343 33  68888888888654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=94.56  E-value=0.52  Score=39.28  Aligned_cols=96  Identities=22%  Similarity=0.290  Sum_probs=61.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      +++++||=. ++.|..+..+++..  +.+|++++.++++.+.+++   .+|.+.+ ..... +..+..... .+.+|.|+
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v-~~~~~-D~~~~~~~~-~~~fD~Vl  325 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNI-ETKAL-DARKVHEKF-AEKFDKIL  325 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeE-EEEeC-Ccccccchh-cccCCEEE
Confidence            677887777 78898888998876  4599999999988777653   3455432 11111 111111111 13589885


Q ss_pred             -c--CCCh--------------------------HHHHHHHHhhccCcEEEEEc
Q 043295          109 -D--NVGG--------------------------EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       109 -d--~~g~--------------------------~~~~~~~~~l~~~G~~v~~g  133 (223)
                       |  |+|.                          ..+..++++|++||+++...
T Consensus       326 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        326 VDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             EcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence             3  3331                          13566788999999998654

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=94.56  E-value=0.23  Score=37.25  Aligned_cols=75  Identities=24%  Similarity=0.324  Sum_probs=43.8

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEec-CHHHHHHHHHhh---CCC---eeeecCCcccHHHHHHHhCC--CCcc
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-TNEKVAILKEKL---GFD---DAFNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      +++||+   |++|...++.....|++|+++.+ ++.+.+...+++   +..   ...|..+...+.+.+.....  +.+|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID   80 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence            367888   89999999888888999999887 444433222122   211   11233332122232222211  3689


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      ++|.+.|
T Consensus        81 ~vi~~ag   87 (242)
T TIGR01829        81 VLVNNAG   87 (242)
T ss_pred             EEEECCC
Confidence            9999887

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.55  E-value=0.62  Score=35.19  Aligned_cols=77  Identities=18%  Similarity=0.239  Sum_probs=46.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEec-CHHHHHHHHHhhCCCe-e--eecCCcccHHHHHH---HhCCCCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-TNEKVAILKEKLGFDD-A--FNYKEETDLKATLK---RYFPDGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-~~~~~~~~~~~~g~~~-~--~~~~~~~~~~~~i~---~~~~~~~d  105 (223)
                      .+++++|+   |++|...+......|++|+.+.+ +.++.+.+.++++... .  .|..+.+++.+.+.   +..++++|
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~id   83 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPIT   83 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCe
Confidence            35688999   89999999888888999987654 4455444443444211 1  23333212333332   23332499


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++.+.|
T Consensus        84 ~li~~ag   90 (253)
T PRK08642         84 TVVNNAL   90 (253)
T ss_pred             EEEECCC
Confidence            9998765

>PRK08303 short chain dehydrogenase; Provisional

Probab=94.54  E-value=0.27  Score=38.75  Aligned_cols=32  Identities=16%  Similarity=0.196  Sum_probs=28.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT   67 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~   67 (223)
                      .+++++|+   +++|.+.++.....|++|+.++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            46789999   789999999888899999999876

>PRK12743 oxidoreductase; Provisional

Probab=94.52  E-value=0.25  Score=37.63  Aligned_cols=76  Identities=16%  Similarity=0.202  Sum_probs=45.0

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEec-CHHHHHHHHH---hhCCC-ee--eecCCcccHHHHHHHhCC--CCc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-TNEKVAILKE---KLGFD-DA--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-~~~~~~~~~~---~~g~~-~~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      +++++|+   +++|..+++.+...|++|+.+.+ +.++.+.+.+   ..|.. ..  .|..+..+....+.+...  +++
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI   81 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5688999   79999999999899999988764 3333333221   23432 11  233332122222222211  268


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        82 d~li~~ag   89 (256)
T PRK12743         82 DVLVNNAG   89 (256)
T ss_pred             CEEEECCC
Confidence            99998886

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=94.52  E-value=0.21  Score=38.22  Aligned_cols=102  Identities=16%  Similarity=0.151  Sum_probs=58.4

Q ss_pred             CCCEEEEE--C---chHHHHHHHHHHcCCeEEEEecCH------HHHHHHHHhhCCCee--eecCCcccHHHHHHHhCC-
Q 043295           36 KGEKVFVS--G---AYGHLVGQYAKLGGCYVVGSAGTN------EKVAILKEKLGFDDA--FNYKEETDLKATLKRYFP-  101 (223)
Q Consensus        36 ~g~~vlI~--g---~vG~~a~qla~~~g~~v~~~~~~~------~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~-  101 (223)
                      .+++++|.  +   ++|.+.++.....|++|+.+.++.      +..+.+.++.+....  .|-.+.++..+.+.+... 
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   84 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQK   84 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHH
Confidence            46788888  2   799999988888999998875432      223333312221111  344443223323332222 


Q ss_pred             -CCccEEEcCCChH-------H--------H---------------HHHHHhhccCcEEEEEccccc
Q 043295          102 -DGIDVYFDNVGGE-------M--------L---------------EAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       102 -~~~d~vid~~g~~-------~--------~---------------~~~~~~l~~~G~~v~~g~~~~  137 (223)
                       +++|+++++.|..       .        +               +..+..+..+|+++.++...+
T Consensus        85 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~  151 (258)
T PRK07370         85 WGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGG  151 (258)
T ss_pred             cCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccc
Confidence             3699999888721       0        1               224456667799988876543

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.52  E-value=0.62  Score=37.10  Aligned_cols=88  Identities=23%  Similarity=0.181  Sum_probs=61.8

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-----e------eeecCCcccHHHHHHHhCCCCc
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-----D------AFNYKEETDLKATLKRYFPDGI  104 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-----~------~~~~~~~~~~~~~i~~~~~~~~  104 (223)
                      .+|.|.  |.+|.+.+......|.+|+...+++++.+.+. ..+..     .      +...  . +..+.+     +..
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~-~~~~~~~~~~g~~~~~~~~~~--~-~~~e~~-----~~a   75 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALA-AERENREYLPGVALPAELYPT--A-DPEEAL-----AGA   75 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HhCcccccCCCCcCCCCeEEe--C-CHHHHH-----cCC
Confidence            467788  99999999888888999999999888877776 43210     0      1111  1 233322     248


Q ss_pred             cEEEcCCChHHHHHHHHhhccCcEEEEEcc
Q 043295          105 DVYFDNVGGEMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       105 d~vid~~g~~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      |+|+-|+....+...+..++++-.++.+..
T Consensus        76 D~Vi~~v~~~~~~~v~~~l~~~~~vi~~~~  105 (328)
T PRK14618         76 DFAVVAVPSKALRETLAGLPRALGYVSCAK  105 (328)
T ss_pred             CEEEEECchHHHHHHHHhcCcCCEEEEEee
Confidence            999999998777778788888777776654

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=94.51  E-value=0.64  Score=37.92  Aligned_cols=89  Identities=21%  Similarity=0.190  Sum_probs=55.5

Q ss_pred             EEEE--CchHHHHHHHHHHcC-C-eEEEEecCHHHHHHHHHhh-CC---CeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           40 VFVS--GAYGHLVGQYAKLGG-C-YVVGSAGTNEKVAILKEKL-GF---DDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        40 vlI~--g~vG~~a~qla~~~g-~-~v~~~~~~~~~~~~~~~~~-g~---~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      |+|.  |.+|..+++.+...+ . +|+..+++.++.+.+.+++ +.   ...+|-.+.    +.+.+... +.|+|++|+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~l~~~~~-~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDP----ESLAELLR-GCDVVINCA   75 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTH----HHHHHHHT-TSSEEEE-S
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCH----HHHHHHHh-cCCEEEECC
Confidence            5677  889999998877765 4 8999999999987776332 22   122343332    22444433 369999999


Q ss_pred             ChH-HHHHHHHhhccCcEEEEEc
Q 043295          112 GGE-MLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 g~~-~~~~~~~~l~~~G~~v~~g  133 (223)
                      |.. ....+-.|+..+-.++..+
T Consensus        76 gp~~~~~v~~~~i~~g~~yvD~~   98 (386)
T PF03435_consen   76 GPFFGEPVARACIEAGVHYVDTS   98 (386)
T ss_dssp             SGGGHHHHHHHHHHHT-EEEESS
T ss_pred             ccchhHHHHHHHHHhCCCeeccc
Confidence            974 4444555667777888743

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.47  E-value=0.63  Score=36.30  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=35.3

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhh
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKL   78 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~   78 (223)
                      ..+++++|.  ||.|++++.-+...|+ +++...|+.++.+.+.+.+
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~  171 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI  171 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence            446789999  9999999988888998 7888889888877665444

>PLN00203 glutamyl-tRNA reductase

Probab=94.47  E-value=0.49  Score=40.16  Aligned_cols=95  Identities=25%  Similarity=0.338  Sum_probs=59.7

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      +.+|+|.  |.+|.++++.+...|+ +|+++.++.++.+.+.++++...+ .....++..+.+.     ..|+||.|++.
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i-~~~~~~dl~~al~-----~aDVVIsAT~s  339 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEI-IYKPLDEMLACAA-----EADVVFTSTSS  339 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCce-EeecHhhHHHHHh-----cCCEEEEccCC
Confidence            6789999  9999999998888897 799999998887777645642111 1111002222221     48999999876


Q ss_pred             H--H-HHHHHHhhcc----Cc---EEEEEccccc
Q 043295          114 E--M-LEAAVANMNL----FG---RVAACGVISE  137 (223)
Q Consensus       114 ~--~-~~~~~~~l~~----~G---~~v~~g~~~~  137 (223)
                      .  . ....+..+.+    .|   .++.++.|.+
T Consensus       340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRd  373 (519)
T PLN00203        340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPRN  373 (519)
T ss_pred             CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence            3  1 2333333321    12   4778877654

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=94.46  E-value=0.75  Score=38.26  Aligned_cols=97  Identities=22%  Similarity=0.241  Sum_probs=62.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHH---hCCCCcc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKR---YFPDGID  105 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~---~~~~~~d  105 (223)
                      ++|++||=. .+.|..+..+++..+  .+|++++.++++++.+++   .+|.+.+.-...  +.. .+..   ...+.||
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~--D~~-~~~~~~~~~~~~fD  327 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAA--DSR-NLLELKPQWRGYFD  327 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeC--Chh-hcccccccccccCC
Confidence            778887777 788888888888764  489999999998876653   356644321111  111 1111   1123689


Q ss_pred             EEE-c--CCCh--------------------------HHHHHHHHhhccCcEEEEEcc
Q 043295          106 VYF-D--NVGG--------------------------EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       106 ~vi-d--~~g~--------------------------~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .|+ |  |+|.                          ..+..+++.|++||++|....
T Consensus       328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc  385 (434)
T PRK14901        328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC  385 (434)
T ss_pred             EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            886 4  4541                          225677889999999987653

>PRK09135 pteridine reductase; Provisional

Probab=94.44  E-value=0.28  Score=36.96  Aligned_cols=77  Identities=10%  Similarity=0.102  Sum_probs=45.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH-HHHHHHHHhh---CCC----eeeecCCcccHHHHHHHhC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN-EKVAILKEKL---GFD----DAFNYKEETDLKATLKRYF--PD  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~-~~~~~~~~~~---g~~----~~~~~~~~~~~~~~i~~~~--~~  102 (223)
                      .++++||+   |++|..+++.....|++|+.++++. ++.+.+.+.+   +..    ...|..+.+.....+....  -+
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45789999   8999998888888899999999753 3333322121   111    1123333312222222221  12


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|++|.+.|
T Consensus        85 ~~d~vi~~ag   94 (249)
T PRK09135         85 RLDALVNNAS   94 (249)
T ss_pred             CCCEEEECCC
Confidence            5899999887

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=94.43  E-value=1  Score=36.90  Aligned_cols=95  Identities=23%  Similarity=0.268  Sum_probs=63.6

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      -.+.++||.  |-+|..++......|. +|+..-|+.++...+.+++|+. +...+   ++.+.+.     .+|+||-++
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l~---el~~~l~-----~~DvVissT  246 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE-AVALE---ELLEALA-----EADVVISST  246 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecHH---HHHHhhh-----hCCEEEEec
Confidence            378899999  7799999998888997 7777778888877666589853 32222   2233332     399999999


Q ss_pred             ChHH----HHHHHHhhccC-c-EEEEEcccccc
Q 043295          112 GGEM----LEAAVANMNLF-G-RVAACGVISEC  138 (223)
Q Consensus       112 g~~~----~~~~~~~l~~~-G-~~v~~g~~~~~  138 (223)
                      +++.    -....+.++.. . .++.++.|.+-
T Consensus       247 sa~~~ii~~~~ve~a~~~r~~~livDiavPRdi  279 (414)
T COG0373         247 SAPHPIITREMVERALKIRKRLLIVDIAVPRDV  279 (414)
T ss_pred             CCCccccCHHHHHHHHhcccCeEEEEecCCCCC
Confidence            8742    23344455433 2 46777776553

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.43  E-value=0.49  Score=37.06  Aligned_cols=90  Identities=16%  Similarity=0.123  Sum_probs=63.0

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEe-cCHHHHHHHHHhhCCCeeeecCCccc
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSA-GTNEKVAILKEKLGFDDAFNYKEETD   91 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~   91 (223)
                      -+|++....+..|..+.  -.|++|.|+   +.+|.-.+.+....|++|++.. ++.                      +
T Consensus       137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~  194 (296)
T PRK14188        137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------------------D  194 (296)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------------------C
Confidence            35666666666666665  689999999   7899888888888899998874 332                      1


Q ss_pred             HHHHHHHhCCCCccEEEcCCChHH-HHHHHHhhccCcEEEEEcccc
Q 043295           92 LKATLKRYFPDGIDVYFDNVGGEM-LEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        92 ~~~~i~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      +.+.++     ..|+|+-++|.+. +...  .+++|..++.+|...
T Consensus       195 l~e~~~-----~ADIVIsavg~~~~v~~~--~lk~GavVIDvGin~  233 (296)
T PRK14188        195 LPAVCR-----RADILVAAVGRPEMVKGD--WIKPGATVIDVGINR  233 (296)
T ss_pred             HHHHHh-----cCCEEEEecCChhhcchh--eecCCCEEEEcCCcc
Confidence            111121     2789999999753 3333  388999999998643

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=94.42  E-value=0.38  Score=36.16  Aligned_cols=94  Identities=20%  Similarity=0.262  Sum_probs=59.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhCCCCccEEEc-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYFPDGIDVYFD-  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid-  109 (223)
                      .++.+||-. .+.|..+..+++. ++++++++.++...+.+++.+   +..  ++.... +..+. ....++.+|+|+- 
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~-~~~~~-~~~~~~~fD~Ii~~  121 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGLK--IDYRQT-TAEEL-AAEHPGQFDVVTCM  121 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCCc--eEEEec-CHHHh-hhhcCCCccEEEEh
Confidence            456777777 6678888888774 789999998888777666322   221  122221 22222 1122347999853 


Q ss_pred             ----CCCh--HHHHHHHHhhccCcEEEEEc
Q 043295          110 ----NVGG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       110 ----~~g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                          +...  ..+..+.+.|+++|.++...
T Consensus       122 ~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~  151 (233)
T PRK05134        122 EMLEHVPDPASFVRACAKLVKPGGLVFFST  151 (233)
T ss_pred             hHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence                3333  35678888999999988653

>PLN02928 oxidoreductase family protein

Probab=94.41  E-value=0.28  Score=39.40  Aligned_cols=91  Identities=15%  Similarity=0.098  Sum_probs=56.3

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC-----Ceeee--cCCcccHHHHHHHhCCCCccE
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF-----DDAFN--YKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~-----~~~~~--~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      .|+++.|.  |.+|..+++.++.+|.+|++..++..+.. .. .++.     ....+  .... ++.+.+.+     .|+
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~-~L~ell~~-----aDi  229 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEP-ED-GLLIPNGDVDDLVDEKGGHE-DIYEFAGE-----ADI  229 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhh-hh-hhccccccccccccccCccc-CHHHHHhh-----CCE
Confidence            46789999  99999999999999999999987633211 11 1110     00000  0111 34444433     788


Q ss_pred             EEcCCCh-H-H----HHHHHHhhccCcEEEEEcc
Q 043295          107 YFDNVGG-E-M----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       107 vid~~g~-~-~----~~~~~~~l~~~G~~v~~g~  134 (223)
                      |+-+... + +    -...+..|+++..+|.++-
T Consensus       230 Vvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaR  263 (347)
T PLN02928        230 VVLCCTLTKETAGIVNDEFLSSMKKGALLVNIAR  263 (347)
T ss_pred             EEECCCCChHhhcccCHHHHhcCCCCeEEEECCC
Confidence            8877652 2 1    2356778888888887763

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=94.41  E-value=0.24  Score=38.66  Aligned_cols=91  Identities=15%  Similarity=0.091  Sum_probs=57.3

Q ss_pred             CCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           36 KGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        36 ~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      ++.+||-. +|.|..+..+++. |.+|++++.++...+.+++.   .+...-+...   +..+.  . ..+.+|+|+.+.
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~---D~~~~--~-~~~~fD~I~~~~  192 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENLNIRTGLY---DINSA--S-IQEEYDFILSTV  192 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEe---chhcc--c-ccCCccEEEEcc
Confidence            34577777 8899988888874 88999999999877766522   2321111111   11110  0 133699998653


Q ss_pred             -----Ch----HHHHHHHHhhccCcEEEEEc
Q 043295          112 -----GG----EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 -----g~----~~~~~~~~~l~~~G~~v~~g  133 (223)
                           ..    ..+..+.+.|++||.++.+.
T Consensus       193 vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        193 VLMFLNRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                 21    24667788999999966543

>PRK06523 short chain dehydrogenase; Provisional

Probab=94.39  E-value=0.21  Score=38.06  Aligned_cols=72  Identities=18%  Similarity=0.254  Sum_probs=44.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-eeeecCCcccHH---HHHHHhCCCCccEEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DAFNYKEETDLK---ATLKRYFPDGIDVYF  108 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~---~~i~~~~~~~~d~vi  108 (223)
                      +++++||.   |++|...++.....|++|+.++++..+.  .  .-... ...|-.+.+...   +.+.+.. +++|+++
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~--~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~id~vi   82 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD--L--PEGVEFVAADLTTAEGCAAVARAVLERL-GGVDILV   82 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh--c--CCceeEEecCCCCHHHHHHHHHHHHHHc-CCCCEEE
Confidence            57889999   8999999988888899999999875431  1  11111 112333331222   2222222 3689999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        83 ~~ag   86 (260)
T PRK06523         83 HVLG   86 (260)
T ss_pred             ECCc
Confidence            9887

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=94.35  E-value=0.19  Score=37.93  Aligned_cols=78  Identities=27%  Similarity=0.347  Sum_probs=45.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEec-CHHHH-HHHHH--hhCCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-TNEKV-AILKE--KLGFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-~~~~~-~~~~~--~~g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      +++.++|+   |++|...++.....|++|+...+ +..+. +.+.+  ..+....   .|..+.++..+.+.+...  ++
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE   81 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            46788999   89999999888889999887653 22222 22220  2343222   233332122222322221  36


Q ss_pred             ccEEEcCCCh
Q 043295          104 IDVYFDNVGG  113 (223)
Q Consensus       104 ~d~vid~~g~  113 (223)
                      +|+++.+.|.
T Consensus        82 id~li~~ag~   91 (246)
T PRK12938         82 IDVLVNNAGI   91 (246)
T ss_pred             CCEEEECCCC
Confidence            9999998873

>PRK07069 short chain dehydrogenase; Validated

Probab=94.34  E-value=0.27  Score=37.13  Aligned_cols=73  Identities=16%  Similarity=0.265  Sum_probs=44.7

Q ss_pred             EEEE---CchHHHHHHHHHHcCCeEEEEecC-HHHHHHHHHhhC----CCe----eeecCCcccHHHHHHHhCC--CCcc
Q 043295           40 VFVS---GAYGHLVGQYAKLGGCYVVGSAGT-NEKVAILKEKLG----FDD----AFNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        40 vlI~---g~vG~~a~qla~~~g~~v~~~~~~-~~~~~~~~~~~g----~~~----~~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      ++|.   |++|...++.....|++|+.++++ .++.+.+.+++.    ...    ..|..+.+.+...+.+...  +++|
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   81 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLS   81 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCcc
Confidence            6777   889999888888889999999987 555544432321    111    1243333233333333222  3689


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++.+.|
T Consensus        82 ~vi~~ag   88 (251)
T PRK07069         82 VLVNNAG   88 (251)
T ss_pred             EEEECCC
Confidence            9999887

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=94.33  E-value=1.1  Score=30.50  Aligned_cols=87  Identities=18%  Similarity=0.179  Sum_probs=49.1

Q ss_pred             CchHHHHHHHHHHcC--CeEEEEec--CHHHH-HHHHHhhCCCeeeecCCc--ccHHH----------------HHHHhC
Q 043295           44 GAYGHLVGQYAKLGG--CYVVGSAG--TNEKV-AILKEKLGFDDAFNYKEE--TDLKA----------------TLKRYF  100 (223)
Q Consensus        44 g~vG~~a~qla~~~g--~~v~~~~~--~~~~~-~~~~~~~g~~~~~~~~~~--~~~~~----------------~i~~~~  100 (223)
                      |.+|..+.++.+...  .+|++.+-  +-+++ +.++ +|.+..+.-.++.  ..+.+                .+.+..
T Consensus         8 GSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~-~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~~l~~~~   86 (129)
T PF02670_consen    8 GSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAR-EFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPEGLEELA   86 (129)
T ss_dssp             SHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHH-HHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHH-HhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChHHHHHHh
Confidence            788888888888876  47776653  33333 3334 6777666544432  01111                122222


Q ss_pred             C-CCccEEEcCCCh-HHHHHHHHhhccCcEEEE
Q 043295          101 P-DGIDVYFDNVGG-EMLEAAVANMNLFGRVAA  131 (223)
Q Consensus       101 ~-~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~  131 (223)
                      . ..+|+++.++.| .-+...+..+..+-++.+
T Consensus        87 ~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaL  119 (129)
T PF02670_consen   87 EEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIAL  119 (129)
T ss_dssp             THTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred             cCCCCCEEEEeCcccchHHHHHHHHHCCCeEEE
Confidence            2 268888887765 667888888887766654

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=94.33  E-value=0.6  Score=35.01  Aligned_cols=96  Identities=15%  Similarity=0.149  Sum_probs=61.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      +++++||=. .|.|..+..+++..+  .+|++++.++...+.+++.+   +.+.+- .-.. +.. .+ ....+.+|+|+
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~-~~~~-d~~-~~-~~~~~~fD~V~  119 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVE-LVHG-NAM-EL-PFDDNSFDYVT  119 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceE-EEEe-chh-cC-CCCCCCccEEE
Confidence            678888888 888999999998764  59999999988877776332   222221 1000 111 11 11223789887


Q ss_pred             cCCC-----h--HHHHHHHHhhccCcEEEEEcc
Q 043295          109 DNVG-----G--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 d~~g-----~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      -+..     .  ..+..+.+.|++||.++....
T Consensus       120 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       120 IGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             EecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            4321     1  246778899999999987653

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=94.32  E-value=0.29  Score=38.95  Aligned_cols=90  Identities=20%  Similarity=0.168  Sum_probs=56.9

Q ss_pred             hCCCEEEEE--CchHHHHHHHHH-HcCC-eEEEEecCHHHHHHHHHhh----CCCeeeecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAK-LGGC-YVVGSAGTNEKVAILKEKL----GFDDAFNYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~-~~g~-~v~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      +...+++|.  |+.|...+.... ..+. +|....++.++.+.+.+++    |.. +....   +..+.++     ..|+
T Consensus       127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~-v~~~~---~~~~av~-----~aDi  197 (326)
T TIGR02992       127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGID-VTAAT---DPRAAMS-----GADI  197 (326)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCce-EEEeC---CHHHHhc-----cCCE
Confidence            445688888  888877776655 4675 7888899988766554344    332 21111   3433332     4999


Q ss_pred             EEcCCChH--HHHHHHHhhccCcEEEEEccc
Q 043295          107 YFDNVGGE--MLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       107 vid~~g~~--~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      |+.|+++.  .+.  ...++++-.+..+|..
T Consensus       198 VvtaT~s~~p~i~--~~~l~~g~~i~~vg~~  226 (326)
T TIGR02992       198 IVTTTPSETPILH--AEWLEPGQHVTAMGSD  226 (326)
T ss_pred             EEEecCCCCcEec--HHHcCCCcEEEeeCCC
Confidence            99999863  232  2347787777777743

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK08278 short chain dehydrogenase; Provisional

Probab=94.30  E-value=0.28  Score=37.86  Aligned_cols=34  Identities=26%  Similarity=0.390  Sum_probs=28.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE   69 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~   69 (223)
                      ++++++|.   |++|...++.+...|++|+.++++.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAE   41 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence            46789999   89999888888888999999997653

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=94.29  E-value=0.86  Score=36.14  Aligned_cols=84  Identities=19%  Similarity=0.212  Sum_probs=57.1

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -.+++|.|.  |.+|.+.++.++..|.+|++..+.....+.+. ..|+. +.      ++.+.+++     .|+|+-++.
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-~~G~~-v~------sl~Eaak~-----ADVV~llLP   80 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-ADGFE-VM------SVSEAVRT-----AQVVQMLLP   80 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-HcCCE-EC------CHHHHHhc-----CCEEEEeCC
Confidence            467899998  99999999999999999988776544445555 55652 21      23333332     788887776


Q ss_pred             hH----HH-HHHHHhhccCcEEEE
Q 043295          113 GE----ML-EAAVANMNLFGRVAA  131 (223)
Q Consensus       113 ~~----~~-~~~~~~l~~~G~~v~  131 (223)
                      .+    .+ ...+..|+++..++.
T Consensus        81 d~~t~~V~~~eil~~MK~GaiL~f  104 (335)
T PRK13403         81 DEQQAHVYKAEVEENLREGQMLLF  104 (335)
T ss_pred             ChHHHHHHHHHHHhcCCCCCEEEE
Confidence            42    22 346677888776543

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=94.28  E-value=1.3  Score=32.82  Aligned_cols=94  Identities=16%  Similarity=0.081  Sum_probs=59.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      +++.+||-. .+.|..+..+++.. .+|++++.+++..+.+++.   +|...+ +.... +..+...  ..+.||+|+-.
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~~~~--~~~~fD~I~~~  151 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNV-SVRHG-DGWKGWP--AYAPFDRILVT  151 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCce-EEEEC-CcccCCC--cCCCcCEEEEc
Confidence            788899888 78888877777664 4899999988877666533   344322 11111 1111110  11369988754


Q ss_pred             CC-hHHHHHHHHhhccCcEEEEEc
Q 043295          111 VG-GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       111 ~g-~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      .. ........+.|+++|+++..-
T Consensus       152 ~~~~~~~~~l~~~L~~gG~lv~~~  175 (212)
T PRK00312        152 AAAPEIPRALLEQLKEGGILVAPV  175 (212)
T ss_pred             cCchhhhHHHHHhcCCCcEEEEEE
Confidence            43 344566788999999987653

>PRK09134 short chain dehydrogenase; Provisional

Probab=94.26  E-value=0.42  Score=36.40  Aligned_cols=77  Identities=14%  Similarity=0.182  Sum_probs=45.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC-HHHHHHHHHhh---CCC---eeeecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT-NEKVAILKEKL---GFD---DAFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~-~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .++++||.   |++|..+++.+...|++|+.+++. .++.+.+.+++   +..   ...|..+.....+.+.+...  ++
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~   87 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALGP   87 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46788999   899999998888899999887654 33433332122   331   11243333123322322211  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++.+.|
T Consensus        88 iD~vi~~ag   96 (258)
T PRK09134         88 ITLLVNNAS   96 (258)
T ss_pred             CCEEEECCc
Confidence            999999886

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.24  E-value=0.38  Score=36.10  Aligned_cols=77  Identities=19%  Similarity=0.338  Sum_probs=45.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH-HHHHHHh---hCCCe-ee--ecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK-VAILKEK---LGFDD-AF--NYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~-~~~~~~~---~g~~~-~~--~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .+.+++|.   |++|...+..+...|++|+.+.++..+ .+...+.   .+... .+  |-.+.+.+.+.+.+...  ++
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGG   83 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            35688899   889999998888889999777765542 2222212   22221 11  33333223333333322  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|.++.+.|
T Consensus        84 id~vi~~ag   92 (248)
T PRK05557         84 VDILVNNAG   92 (248)
T ss_pred             CCEEEECCC
Confidence            899998886

>TIGR02415 23BDH acetoin reductases

Probab=94.21  E-value=0.28  Score=37.16  Aligned_cols=75  Identities=16%  Similarity=0.225  Sum_probs=45.9

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCe-e--eecCCcccHHHHHHHhCC--CCccE
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDD-A--FNYKEETDLKATLKRYFP--DGIDV  106 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~-~--~~~~~~~~~~~~i~~~~~--~~~d~  106 (223)
                      ++++|.   |++|...++.....|++|+.+.+++++.+.+.++   .+... .  .|-.+.+...+.+.+...  +++|+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   80 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV   80 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            367888   8999999888888899999999887655433212   23211 1  233333123333333221  26899


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ++.+.|
T Consensus        81 vi~~ag   86 (254)
T TIGR02415        81 MVNNAG   86 (254)
T ss_pred             EEECCC
Confidence            998886

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.18  E-value=0.45  Score=33.99  Aligned_cols=40  Identities=20%  Similarity=0.222  Sum_probs=34.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHH
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK   75 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~   75 (223)
                      .|..|++.   .++|...++-....|++|++++++++.+..+-
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV   48 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLV   48 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHH
Confidence            46677888   68999999999999999999999999887666

>PRK05855 short chain dehydrogenase; Validated

Probab=94.15  E-value=0.24  Score=42.48  Aligned_cols=78  Identities=19%  Similarity=0.136  Sum_probs=49.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCC-ee--eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFD-DA--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .+.++||+   |++|...++.....|++|+.++++.++.+.+.+.   .|.. ..  .|-.+.+...+.+.+...  +++
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i  393 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVP  393 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            45678888   8999988888888899999999998776554322   2331 11  233333122222332221  369


Q ss_pred             cEEEcCCCh
Q 043295          105 DVYFDNVGG  113 (223)
Q Consensus       105 d~vid~~g~  113 (223)
                      |+++++.|.
T Consensus       394 d~lv~~Ag~  402 (582)
T PRK05855        394 DIVVNNAGI  402 (582)
T ss_pred             cEEEECCcc
Confidence            999998873

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.12  E-value=0.28  Score=36.87  Aligned_cols=76  Identities=25%  Similarity=0.370  Sum_probs=45.5

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEE-ecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhCC--CCc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGS-AGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~-~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      ++++||.   |++|...+......|++|+.+ .+++++.+.+.+.+   +... +  .|..+.+++.+.+.....  +++
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKI   84 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4688898   789988887777789999998 87776654443222   2111 1  233332122222222211  269


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |++|.+.|
T Consensus        85 d~vi~~ag   92 (247)
T PRK05565         85 DILVNNAG   92 (247)
T ss_pred             CEEEECCC
Confidence            99998776

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.12  E-value=0.29  Score=37.02  Aligned_cols=77  Identities=17%  Similarity=0.225  Sum_probs=45.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEE-ecCHHHHHHHHH---hhCCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGS-AGTNEKVAILKE---KLGFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~-~~~~~~~~~~~~---~~g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      ++++++|.   |++|...+......|++|+.. .++..+.+.+.+   ..+....   .|-.+..+....+.+...  ++
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR   82 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            45789999   899999998888889988764 556555433321   2333211   233332122222322221  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|++|.+.|
T Consensus        83 id~vi~~ag   91 (250)
T PRK08063         83 LDVFVNNAA   91 (250)
T ss_pred             CCEEEECCC
Confidence            899999886

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=94.09  E-value=0.29  Score=37.33  Aligned_cols=95  Identities=12%  Similarity=0.160  Sum_probs=61.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHH---cCCeEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKL---GGCYVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~---~g~~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      .++.+||-. .|.|..+..+++.   -++++++++.++.-++.+++.+   +...-+..... +..    +...+.+|++
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~-d~~----~~~~~~~D~v  129 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEG-DIR----DIAIENASMV  129 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeC-Chh----hCCCCCCCEE
Confidence            677888888 7789888888874   3679999999999888877433   22211222221 221    1111247777


Q ss_pred             EcCC-----Ch----HHHHHHHHhhccCcEEEEEcc
Q 043295          108 FDNV-----GG----EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       108 id~~-----g~----~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      +...     ..    ..+....+.|+|||.++....
T Consensus       130 v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        130 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            6432     11    257788899999999998764

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=94.09  E-value=1.9  Score=32.42  Aligned_cols=171  Identities=13%  Similarity=0.110  Sum_probs=91.9

Q ss_pred             CCCEEEEE-----CchHHHHHHHHHHcCCeEEEEecCHH---HHHHHHHhhCCCeeeecCC--cccH---HHHHHHhCCC
Q 043295           36 KGEKVFVS-----GAYGHLVGQYAKLGGCYVVGSAGTNE---KVAILKEKLGFDDAFNYKE--ETDL---KATLKRYFPD  102 (223)
Q Consensus        36 ~g~~vlI~-----g~vG~~a~qla~~~g~~v~~~~~~~~---~~~~~~~~~g~~~~~~~~~--~~~~---~~~i~~~~~~  102 (223)
                      .|++.||.     -+++-..++.++..|+++..|...++   +.+.+.+++|.+.++.-+-  .+++   .+.+++-. +
T Consensus         5 ~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~-g   83 (259)
T COG0623           5 EGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKW-G   83 (259)
T ss_pred             CCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhh-C
Confidence            57899998     57777888999999999999987764   2333333666655553332  2112   22222222 2


Q ss_pred             CccEEEcCCCh-H--------------H---------------HHHHHHhhccCcEEEEEcccccccccccCCCCchH--
Q 043295          103 GIDVYFDNVGG-E--------------M---------------LEAAVANMNLFGRVAACGVISECADASKRAVPNMI--  150 (223)
Q Consensus       103 ~~d~vid~~g~-~--------------~---------------~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~--  150 (223)
                      .+|.++.|++- +              .               .+.+..+|.+||.++.+...+....   .+..+..  
T Consensus        84 ~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~---vPnYNvMGv  160 (259)
T COG0623          84 KLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERV---VPNYNVMGV  160 (259)
T ss_pred             cccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceee---cCCCchhHH
Confidence            68888766652 1              0               1234568899999998887665321   1111111  


Q ss_pred             --------------HHHhhcceEEeeeccCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcC
Q 043295          151 --------------DIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRG  210 (223)
Q Consensus       151 --------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~  210 (223)
                                    .+=.+++++.....++++..-..-+.....++....-..++......|++...--.+.+.
T Consensus       161 AKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aPl~r~vt~eeVG~tA~fLlSd  234 (259)
T COG0623         161 AKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPLRRNVTIEEVGNTAAFLLSD  234 (259)
T ss_pred             HHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhccccHHHHHHHHHhhCCccCCCCHHHhhhhHHHHhcc
Confidence                          111134444444444432222222222333444444444444555677777766665544

>PRK07201 short chain dehydrogenase; Provisional

Probab=94.08  E-value=0.36  Score=42.29  Aligned_cols=76  Identities=18%  Similarity=0.287  Sum_probs=49.1

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhCC--CCcc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      +++++|+   |++|..+++.....|++|+.+++++++.+.+.+++   +...   ..|-.+.++..+.+.+...  +++|
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id  450 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGHVD  450 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence            5688999   78999988888888999999999988765554232   3211   1233333123333333222  2699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++.+.|
T Consensus       451 ~li~~Ag  457 (657)
T PRK07201        451 YLVNNAG  457 (657)
T ss_pred             EEEECCC
Confidence            9999887

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=94.06  E-value=0.52  Score=35.94  Aligned_cols=96  Identities=15%  Similarity=0.094  Sum_probs=62.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCC---C----ee-eecCCcccHHHHHHHhCCCCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGF---D----DA-FNYKEETDLKATLKRYFPDGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~---~----~~-~~~~~~~~~~~~i~~~~~~~~  104 (223)
                      ...++|||. ||-|..+-++.+.... +|.++.-.+.-.+.+++-++.   .    ++ +-.  . +-..-+++...+.+
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~--~-Dg~~~l~~~~~~~y  151 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIII--G-DGRKFLKETQEEKY  151 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEE--S-THHHHHHTSSST-E
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEE--h-hhHHHHHhccCCcc
Confidence            568999999 8889888888887755 899999888877887732321   1    11 111  1 34445555433379


Q ss_pred             cEEE-cCCC----------hHHHHHHHHhhccCcEEEEEc
Q 043295          105 DVYF-DNVG----------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       105 d~vi-d~~g----------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+|+ |...          .+.++.+.++|+++|.++.-.
T Consensus       152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            9886 5443          145778889999999998754

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK08219 short chain dehydrogenase; Provisional

Probab=94.02  E-value=0.39  Score=35.60  Aligned_cols=71  Identities=11%  Similarity=0.156  Sum_probs=44.4

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee--eecCCcccHHHHHHHhCCC--CccEEEcC
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA--FNYKEETDLKATLKRYFPD--GIDVYFDN  110 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~--~~d~vid~  110 (223)
                      .+++|.   |.+|...+..+... ++|++++++..+.+.+.+....-.+  .|-.+.    +.+.+...+  ++|.++.+
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~~~~~~~~id~vi~~   78 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDP----EAIAAAVEQLGRLDVLVHN   78 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCH----HHHHHHHHhcCCCCEEEEC
Confidence            578888   78998888766666 8999999988776655422211122  222222    233333322  69999998


Q ss_pred             CCh
Q 043295          111 VGG  113 (223)
Q Consensus       111 ~g~  113 (223)
                      .|.
T Consensus        79 ag~   81 (227)
T PRK08219         79 AGV   81 (227)
T ss_pred             CCc
Confidence            873

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=94.01  E-value=0.94  Score=28.67  Aligned_cols=84  Identities=19%  Similarity=0.169  Sum_probs=54.8

Q ss_pred             EEEEE--CchHHHHHHHHHHcC---CeEEEE-ecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           39 KVFVS--GAYGHLVGQYAKLGG---CYVVGS-AGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g---~~v~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      +|.|.  |.+|.+.++-....|   .+|+.. .+++++.+.+.++++.....+     +..+.+++     .|+||-|+-
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-----advvilav~   70 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATAD-----DNEEAAQE-----ADVVILAVK   70 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESE-----EHHHHHHH-----TSEEEE-S-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccC-----ChHHhhcc-----CCEEEEEEC
Confidence            35566  888988888888888   788844 899999888875777533321     23333332     899999998


Q ss_pred             hHHHHHHHH---hhccCcEEEEE
Q 043295          113 GEMLEAAVA---NMNLFGRVAAC  132 (223)
Q Consensus       113 ~~~~~~~~~---~l~~~G~~v~~  132 (223)
                      ...+...+.   ...++..++.+
T Consensus        71 p~~~~~v~~~i~~~~~~~~vis~   93 (96)
T PF03807_consen   71 PQQLPEVLSEIPHLLKGKLVISI   93 (96)
T ss_dssp             GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHHhhccCCCEEEEe
Confidence            755444444   44566666665

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.99  E-value=0.72  Score=35.85  Aligned_cols=84  Identities=19%  Similarity=0.171  Sum_probs=52.0

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChHHH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEML  116 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~  116 (223)
                      +|.|.  |.+|...+...+..|.+|++.++++++.+.+. +.|.....   .. +. +.+     ...|+||-|+.....
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-~~g~~~~~---~~-~~-~~~-----~~aDlVilavp~~~~   70 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-ERGLVDEA---ST-DL-SLL-----KDCDLVILALPIGLL   70 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HCCCcccc---cC-CH-hHh-----cCCCEEEEcCCHHHH
Confidence            46677  88888888777778999999999988888887 66642111   11 11 111     147888888875433


Q ss_pred             H----HHHHhhccCcEEEEEc
Q 043295          117 E----AAVANMNLFGRVAACG  133 (223)
Q Consensus       117 ~----~~~~~l~~~G~~v~~g  133 (223)
                      .    .....++++..+..++
T Consensus        71 ~~~~~~l~~~l~~~~ii~d~~   91 (279)
T PRK07417         71 LPPSEQLIPALPPEAIVTDVG   91 (279)
T ss_pred             HHHHHHHHHhCCCCcEEEeCc
Confidence            2    3333444454454444

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=93.97  E-value=0.71  Score=34.18  Aligned_cols=98  Identities=21%  Similarity=0.208  Sum_probs=62.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      .++.+|+-. ++.|..+..+++..+  .++++++.++...+.+++.+....-+..... +..+ .. ...+.+|+|+...
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~-d~~~-~~-~~~~~~D~i~~~~  114 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQA-DAEA-LP-FEDNSFDAVTIAF  114 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEec-chhc-CC-CCCCcEEEEEEee
Confidence            567888888 777988888888877  4999999998888887733321110111111 1211 10 1123699886532


Q ss_pred             C-----h--HHHHHHHHhhccCcEEEEEccc
Q 043295          112 G-----G--EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       112 g-----~--~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      +     .  ..++.+...|+++|+++.++..
T Consensus       115 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       115 GLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             eeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            2     1  3577888899999999987653

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.96  E-value=0.72  Score=35.79  Aligned_cols=92  Identities=13%  Similarity=0.120  Sum_probs=65.0

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      -+|++....+..|..+.  -.|++++|.   ..||.=++.+....|++|+... +..                   . ++
T Consensus       135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtich-s~T-------------------~-~l  193 (282)
T PRK14169        135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAH-SKT-------------------R-NL  193 (282)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEC-CCC-------------------C-CH
Confidence            45666666666666666  688999888   7899999999988899888653 211                   1 23


Q ss_pred             HHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      .+.+++     .|+++-++|.+.+ -.-+.+++|..++.+|...
T Consensus       194 ~~~~~~-----ADIvI~AvG~p~~-i~~~~vk~GavVIDvGin~  231 (282)
T PRK14169        194 KQLTKE-----ADILVVAVGVPHF-IGADAVKPGAVVIDVGISR  231 (282)
T ss_pred             HHHHhh-----CCEEEEccCCcCc-cCHHHcCCCcEEEEeeccc
Confidence            333333     8999999997654 3355789999999998643

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=93.93  E-value=1.8  Score=33.95  Aligned_cols=31  Identities=19%  Similarity=0.149  Sum_probs=24.9

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEe
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSA   65 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~   65 (223)
                      -.++.|+|.  |+||..++.+..+.|+ ++..++
T Consensus        72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVD  105 (430)
T KOG2018|consen   72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVD  105 (430)
T ss_pred             hcCcEEEEEecCchhHHHHHHHHHhcCceEEEec
Confidence            456777777  9999999999999999 565555

>PRK07102 short chain dehydrogenase; Provisional

Probab=93.89  E-value=0.52  Score=35.50  Aligned_cols=37  Identities=14%  Similarity=0.169  Sum_probs=31.0

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHH
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL   74 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~   74 (223)
                      ++++|.   |++|...++.....|++|+++++++++.+.+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~   41 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERL   41 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence            478888   8999999988888899999999988766544

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.88  E-value=0.8  Score=35.63  Aligned_cols=91  Identities=12%  Similarity=0.042  Sum_probs=64.1

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE--C-chHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS--G-AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~--g-~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      -.|++....+..|..+.  -.|++++|.  | .+|.-++.+....|++|+.....-+                     ++
T Consensus       143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~---------------------~l  201 (287)
T PRK14176        143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD---------------------DL  201 (287)
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC---------------------CH
Confidence            45666666666666665  689999999  4 5999999999999999877652111                     22


Q ss_pred             HHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .+.+++     .|+++-++|.+.+- .-+.+++|..++.+|..
T Consensus       202 ~~~~~~-----ADIvv~AvG~p~~i-~~~~vk~gavVIDvGin  238 (287)
T PRK14176        202 KKYTLD-----ADILVVATGVKHLI-KADMVKEGAVIFDVGIT  238 (287)
T ss_pred             HHHHhh-----CCEEEEccCCcccc-CHHHcCCCcEEEEeccc
Confidence            222222     89999999975432 34588899999999864

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=93.83  E-value=0.38  Score=33.91  Aligned_cols=92  Identities=16%  Similarity=0.206  Sum_probs=60.7

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHH-------HHHHhCCC-Ccc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKA-------TLKRYFPD-GID  105 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~i~~~~~~-~~d  105 (223)
                      ..+|+|+   |.+|.++++..|..++-|..++.++...      -....+++.++  +|.+       ++-+...+ .+|
T Consensus         3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~------Ad~sI~V~~~~--swtEQe~~v~~~vg~sL~gekvD   74 (236)
T KOG4022|consen    3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQ------ADSSILVDGNK--SWTEQEQSVLEQVGSSLQGEKVD   74 (236)
T ss_pred             CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccc------ccceEEecCCc--chhHHHHHHHHHHHHhhcccccc
Confidence            3578888   8999999999999999999888775542      22233444433  3433       34444555 899


Q ss_pred             EEEcCCCh-----H---HH-------------------HHHHHhhccCcEEEEEcccc
Q 043295          106 VYFDNVGG-----E---ML-------------------EAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       106 ~vid~~g~-----~---~~-------------------~~~~~~l~~~G~~v~~g~~~  136 (223)
                      .||...|+     .   .+                   ..+-..|+++|-+.+.|...
T Consensus        75 av~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAka  132 (236)
T KOG4022|consen   75 AVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKA  132 (236)
T ss_pred             eEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeeccccc
Confidence            99986653     1   11                   11234788999998887543

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=93.79  E-value=0.36  Score=32.72  Aligned_cols=80  Identities=15%  Similarity=0.206  Sum_probs=47.3

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEe-cCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSA-GTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      +.-+|-|.  |-+|..+....+..|..|.++. ++.+..+.+...++...+.+..+          .. ...|++|=++.
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~----------~~-~~aDlv~iavp   77 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEE----------IL-RDADLVFIAVP   77 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTG----------GG-CC-SEEEE-S-
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccccccc----------cc-ccCCEEEEEec
Confidence            34577777  9999999999999999998886 44445566653444433333221          11 14899999999


Q ss_pred             hHHHHHHHHhhccC
Q 043295          113 GEMLEAAVANMNLF  126 (223)
Q Consensus       113 ~~~~~~~~~~l~~~  126 (223)
                      .+.+...+..|...
T Consensus        78 DdaI~~va~~La~~   91 (127)
T PF10727_consen   78 DDAIAEVAEQLAQY   91 (127)
T ss_dssp             CCHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHh
Confidence            88777777766543

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PLN00015 protochlorophyllide reductase

Probab=93.78  E-value=0.4  Score=37.78  Aligned_cols=69  Identities=14%  Similarity=0.146  Sum_probs=43.7

Q ss_pred             CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCC--Ce----eeecCCcccHHHHHHHhCC--CCccEEEcCCC
Q 043295           44 GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGF--DD----AFNYKEETDLKATLKRYFP--DGIDVYFDNVG  112 (223)
Q Consensus        44 g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~--~~----~~~~~~~~~~~~~i~~~~~--~~~d~vid~~g  112 (223)
                      +++|...++.....| ++|+.++++.++.+.+.++++.  ..    ..|-.+.++....+.+...  +++|+++++.|
T Consensus         7 ~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lInnAG   84 (308)
T PLN00015          7 SGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLVCNAA   84 (308)
T ss_pred             ChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence            789998888777889 8999999988776655435432  11    1344443223333333222  36899998876

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=93.76  E-value=0.13  Score=39.39  Aligned_cols=73  Identities=15%  Similarity=0.214  Sum_probs=45.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-eeeecCCcccHHHHHHHhCC--CCccEEEc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DAFNYKEETDLKATLKRYFP--DGIDVYFD  109 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~--~~~d~vid  109 (223)
                      .+++++|.   |++|.+.++.....|++|+.+++++.+.+    ..... ...|-.+..++.+.+.+...  +++|+++.
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~   83 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ----HENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVN   83 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc----cCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            46788998   89999999988889999999987765432    11111 11233333133333332221  36899998


Q ss_pred             CCC
Q 043295          110 NVG  112 (223)
Q Consensus       110 ~~g  112 (223)
                      +.|
T Consensus        84 ~Ag   86 (266)
T PRK06171         84 NAG   86 (266)
T ss_pred             CCc
Confidence            887

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.74  E-value=0.86  Score=35.44  Aligned_cols=92  Identities=20%  Similarity=0.121  Sum_probs=65.2

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      -+||+.......|..+.  -.|++++|.   ..||.-++.+....|++|+... +..                   . ++
T Consensus       137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~ch-s~t-------------------~-~l  195 (284)
T PRK14190        137 FLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCH-SKT-------------------K-NL  195 (284)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEe-CCc-------------------h-hH
Confidence            45666666666666666  689999999   7899999999999999988753 211                   1 23


Q ss_pred             HHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      .+.+++     .|+++-++|.+.+ -.-+.+++|..++.+|...
T Consensus       196 ~~~~~~-----ADIvI~AvG~p~~-i~~~~ik~gavVIDvGi~~  233 (284)
T PRK14190        196 AELTKQ-----ADILIVAVGKPKL-ITADMVKEGAVVIDVGVNR  233 (284)
T ss_pred             HHHHHh-----CCEEEEecCCCCc-CCHHHcCCCCEEEEeeccc
Confidence            333333     8899999987543 2345678999999998654

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=93.71  E-value=0.49  Score=36.40  Aligned_cols=97  Identities=16%  Similarity=0.174  Sum_probs=62.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHhhC------CCeeeecCCcccHHHHHHHhCCCCcc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEKLG------FDDAFNYKEETDLKATLKRYFPDGID  105 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~i~~~~~~~~d  105 (223)
                      .++++||-. .|.|..+..+++..|  .+|++++.+++-++.+++...      ...+ ..... +. +.+ ...++.+|
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i-~~~~~-d~-~~l-p~~~~sfD  147 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNI-EWIEG-DA-TDL-PFDDCYFD  147 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCe-EEEEc-cc-ccC-CCCCCCEe
Confidence            678888888 888998888888765  599999999998887763321      1111 11110 10 111 01122689


Q ss_pred             EEEcCCC-----h--HHHHHHHHhhccCcEEEEEccc
Q 043295          106 VYFDNVG-----G--EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       106 ~vid~~g-----~--~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .|+-..+     .  ..+....+.|+|||+++.+...
T Consensus       148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~  184 (261)
T PLN02233        148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN  184 (261)
T ss_pred             EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            8865332     1  3578899999999999887654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=93.71  E-value=0.69  Score=38.91  Aligned_cols=97  Identities=16%  Similarity=0.143  Sum_probs=62.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh-CCCeeeecCCcccHHHHHHHhCCCCccEEEcCC-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL-GFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV-  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~-  111 (223)
                      .++.+||=. .|.|..+..+++..|++|++++.++..++.+++.. +...-+..... ++...  ....+.||+|+..- 
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~-d~~~~--~~~~~~fD~I~s~~~  341 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVA-DCTKK--TYPDNSFDVIYSRDT  341 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEc-CcccC--CCCCCCEEEEEECCc
Confidence            567788888 78899899999988999999999998887776221 22111111111 11110  01122699998632 


Q ss_pred             ----Ch--HHHHHHHHhhccCcEEEEEcc
Q 043295          112 ----GG--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       112 ----g~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                          ..  ..+..+.+.|+|||+++....
T Consensus       342 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~  370 (475)
T PLN02336        342 ILHIQDKPALFRSFFKWLKPGGKVLISDY  370 (475)
T ss_pred             ccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence                11  357888999999999887654

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=93.70  E-value=0.49  Score=36.08  Aligned_cols=77  Identities=19%  Similarity=0.230  Sum_probs=45.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH-HHHHHHHH---hhCCCe---eeecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN-EKVAILKE---KLGFDD---AFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~-~~~~~~~~---~~g~~~---~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      ++++++|.   |++|...++.....|++|+.+.++. +..+.+.+   ..+...   ..|-.+.++..+.+.....  ++
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~   85 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFGT   85 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            57889999   8999999998889999988877643 33222221   223211   1233333122222222221  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++.+.|
T Consensus        86 id~lv~~ag   94 (261)
T PRK08936         86 LDVMINNAG   94 (261)
T ss_pred             CCEEEECCC
Confidence            899998887

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=93.70  E-value=0.26  Score=37.14  Aligned_cols=161  Identities=15%  Similarity=0.121  Sum_probs=89.6

Q ss_pred             CchHHHHHHHHHHcCCeEEEEecCHHH----HHHHHHhhCCCeee--ecCCcc---cHHHHHHHhCCCCccEEEcCCCh-
Q 043295           44 GAYGHLVGQYAKLGGCYVVGSAGTNEK----VAILKEKLGFDDAF--NYKEET---DLKATLKRYFPDGIDVYFDNVGG-  113 (223)
Q Consensus        44 g~vG~~a~qla~~~g~~v~~~~~~~~~----~~~~~~~~g~~~~~--~~~~~~---~~~~~i~~~~~~~~d~vid~~g~-  113 (223)
                      +++|.+.++-....|++|+.++++.++    .+.+.++.+.. ++  |..+.+   .+.+.+.+..++++|+++++.|. 
T Consensus         6 ~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~~   84 (241)
T PF13561_consen    6 SGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAE-VIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGIS   84 (241)
T ss_dssp             SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSE-EEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEESC
T ss_pred             CChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCc-eEeecCcchHHHHHHHHHHHhhcCCCeEEEEeccccc
Confidence            578999999999999999999999987    34444355643 33  333331   23334444454679998876542 


Q ss_pred             H--------------HH---------------HHHHHhhccCcEEEEEcccccccccccCCCCch---------------
Q 043295          114 E--------------ML---------------EAAVANMNLFGRVAACGVISECADASKRAVPNM---------------  149 (223)
Q Consensus       114 ~--------------~~---------------~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~---------------  149 (223)
                      .              .+               +.+...++++|.++.++........   .....               
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~---~~~~~y~~sKaal~~l~r~l  161 (241)
T PF13561_consen   85 PPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPM---PGYSAYSASKAALEGLTRSL  161 (241)
T ss_dssp             TGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBS---TTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccC---ccchhhHHHHHHHHHHHHHH
Confidence            0              11               2344577888999988766443211   01101               


Q ss_pred             -HHHHh-hcceEEeeeccCccchHHHHH---HHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCC
Q 043295          150 -IDIVY-KRIKIQGFLSTDHFDLHQDFI---SMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGD  211 (223)
Q Consensus       150 -~~~~~-~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~  211 (223)
                       ..+-. +++++.....+.......+..   ++..+.+.+.   .+.......+|+.++...|.+..
T Consensus       162 A~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~---~pl~r~~~~~evA~~v~fL~s~~  225 (241)
T PF13561_consen  162 AKELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKR---IPLGRLGTPEEVANAVLFLASDA  225 (241)
T ss_dssp             HHHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHH---STTSSHBEHHHHHHHHHHHHSGG
T ss_pred             HHHhccccCeeeeeecccceeccchhccccccchhhhhhhh---hccCCCcCHHHHHHHHHHHhCcc
Confidence             12223 466666666555432222222   2333333221   11122235677888888887755

...

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=93.67  E-value=1.4  Score=32.91  Aligned_cols=98  Identities=23%  Similarity=0.225  Sum_probs=62.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHhhCC---CeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEKLGF---DDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      .++.+|+-. .+.|..+..+++..+  .++++++.++...+.+++.+..   ...+..... +..+ . ....+.+|+|+
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~~~D~I~  126 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQG-DAEA-L-PFPDNSFDAVT  126 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEec-cccc-C-CCCCCCccEEE
Confidence            567788888 677999999999885  7999999998888877733321   111111111 1111 0 01123688886


Q ss_pred             cCCC-----h--HHHHHHHHhhccCcEEEEEccc
Q 043295          109 DNVG-----G--EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       109 d~~g-----~--~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      ...+     .  ..+..+..+|+++|.++.+...
T Consensus       127 ~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~  160 (239)
T PRK00216        127 IAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS  160 (239)
T ss_pred             EecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence            4221     1  3577888899999999877543

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.67  E-value=0.89  Score=35.33  Aligned_cols=91  Identities=11%  Similarity=0.077  Sum_probs=64.8

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      -+|++....+..|..+.  -.|++++|.   ..+|.=++.+....|++|+.....-                    . ++
T Consensus       138 ~~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------------~-~l  196 (284)
T PRK14177        138 YLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------------Q-NL  196 (284)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------------C-CH
Confidence            45666555565566555  689999998   7899999999999999888754211                    1 23


Q ss_pred             HHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .+.+++     .|+++-++|.+.+ -.-+.+++|..++.+|..
T Consensus       197 ~~~~~~-----ADIvIsAvGk~~~-i~~~~ik~gavVIDvGin  233 (284)
T PRK14177        197 PSIVRQ-----ADIIVGAVGKPEF-IKADWISEGAVLLDAGYN  233 (284)
T ss_pred             HHHHhh-----CCEEEEeCCCcCc-cCHHHcCCCCEEEEecCc
Confidence            333332     8999999997654 236688999999999964

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=93.66  E-value=0.45  Score=33.63  Aligned_cols=95  Identities=15%  Similarity=0.081  Sum_probs=58.1

Q ss_pred             hhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           16 ANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        16 aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      ...+|++....+..|..+.  -.|++++|.   ..+|.-+..+....|++|+......+                     
T Consensus        13 ~~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~---------------------   71 (160)
T PF02882_consen   13 PGFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTK---------------------   71 (160)
T ss_dssp             TSS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSS---------------------
T ss_pred             CCCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCC---------------------
Confidence            3445666666666676665  789999999   57999999999999999988553211                     


Q ss_pred             cHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEccccc
Q 043295           91 DLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus        91 ~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      ++.+.++     ..|+|+-++|.+.+ ---+.++++..++.+|....
T Consensus        72 ~l~~~~~-----~ADIVVsa~G~~~~-i~~~~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   72 NLQEITR-----RADIVVSAVGKPNL-IKADWIKPGAVVIDVGINYV  112 (160)
T ss_dssp             SHHHHHT-----TSSEEEE-SSSTT--B-GGGS-TTEEEEE--CEEE
T ss_pred             cccceee-----eccEEeeeeccccc-cccccccCCcEEEecCCccc
Confidence            2222222     28899999987543 12447788989998886543

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.63  E-value=0.73  Score=31.81  Aligned_cols=90  Identities=14%  Similarity=0.086  Sum_probs=61.4

Q ss_pred             cccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHH
Q 043295           19 AGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLK   93 (223)
Q Consensus        19 l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   93 (223)
                      +|+........++.++  -.|++|+|+   ..+|.-++.+....|++|+.......                     ++.
T Consensus         8 ~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~---------------------~l~   66 (140)
T cd05212           8 VSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI---------------------QLQ   66 (140)
T ss_pred             cccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc---------------------CHH
Confidence            4445555555565555  689999999   78999999999889999988763221                     122


Q ss_pred             HHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEccc
Q 043295           94 ATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus        94 ~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      +.+++     .|+|+-++|...+ ---+.+++|..++.+|..
T Consensus        67 ~~v~~-----ADIVvsAtg~~~~-i~~~~ikpGa~Vidvg~~  102 (140)
T cd05212          67 SKVHD-----ADVVVVGSPKPEK-VPTEWIKPGATVINCSPT  102 (140)
T ss_pred             HHHhh-----CCEEEEecCCCCc-cCHHHcCCCCEEEEcCCC
Confidence            22222     8899988887532 234568899888877753

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK03612 spermidine synthase; Provisional

Probab=93.63  E-value=1.6  Score=37.25  Aligned_cols=96  Identities=14%  Similarity=0.108  Sum_probs=62.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCC----------CeeeecCCcccHHHHHHHhCCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGF----------DDAFNYKEETDLKATLKRYFPD  102 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~~i~~~~~~  102 (223)
                      ++.++||+. ++-|..+.++++.-+ .+|++++.+++-.+.+++....          ..+ +.... |..+.+++ .++
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv-~vi~~-Da~~~l~~-~~~  372 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRV-TVVND-DAFNWLRK-LAE  372 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCce-EEEEC-hHHHHHHh-CCC
Confidence            567899999 888998888888655 5999999999988888831111          111 11111 33333333 234


Q ss_pred             CccEEE-cCCCh-----------HHHHHHHHhhccCcEEEEEc
Q 043295          103 GIDVYF-DNVGG-----------EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       103 ~~d~vi-d~~g~-----------~~~~~~~~~l~~~G~~v~~g  133 (223)
                      .+|+|+ |....           +.++.+.+.|+++|.++.-.
T Consensus       373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            799886 33211           23567888999999988654

>PRK05599 hypothetical protein; Provisional

Probab=93.60  E-value=0.45  Score=36.07  Aligned_cols=72  Identities=15%  Similarity=0.123  Sum_probs=44.3

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe--e--eecCCcccH---HHHHHHhCCCCcc
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD--A--FNYKEETDL---KATLKRYFPDGID  105 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~--~--~~~~~~~~~---~~~i~~~~~~~~d  105 (223)
                      +++|.   +++|.+.++... .|++|+.+++++++.+.+.+++   |...  .  .|-.+.++.   .+.+.+.. +++|
T Consensus         2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~-g~id   79 (246)
T PRK05599          2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELA-GEIS   79 (246)
T ss_pred             eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhc-CCCC
Confidence            57888   789988886655 4999999999888776554333   3221  2  233333122   23333322 3689


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++.+.|
T Consensus        80 ~lv~nag   86 (246)
T PRK05599         80 LAVVAFG   86 (246)
T ss_pred             EEEEecC
Confidence            9998776

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=93.58  E-value=0.92  Score=33.76  Aligned_cols=94  Identities=18%  Similarity=0.182  Sum_probs=57.0

Q ss_pred             CCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee--eecCCcccHHHHHHHhCCCCccEEEc----
Q 043295           37 GEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA--FNYKEETDLKATLKRYFPDGIDVYFD----  109 (223)
Q Consensus        37 g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~~~d~vid----  109 (223)
                      +.+||-. ++.|..+.++++ .+.++++++.++...+.+++.+.....  +..... +..+.... .++.+|+|+-    
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~-d~~~~~~~-~~~~~D~i~~~~~l  122 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLAR-LGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCT-SVEDLAEK-GAKSFDVVTCMEVL  122 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeC-CHHHhhcC-CCCCccEEEehhHH
Confidence            6677777 677888887776 467899999988877776633322111  111111 22222211 1247998864    


Q ss_pred             -CCCh--HHHHHHHHhhccCcEEEEEc
Q 043295          110 -NVGG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       110 -~~g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                       ....  ..+..+.+.|+++|.++...
T Consensus       123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~  149 (224)
T TIGR01983       123 EHVPDPQAFIRACAQLLKPGGILFFST  149 (224)
T ss_pred             HhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence             3332  35677788999999987543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=93.53  E-value=0.91  Score=36.12  Aligned_cols=85  Identities=19%  Similarity=0.086  Sum_probs=57.3

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEc-CCC
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFD-NVG  112 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid-~~g  112 (223)
                      .|+++-|.  |.+|.+.++.++..|.+|+...+++. -+..+ ++++.++       ++.+.+.+     .|++.- |..
T Consensus       145 ~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~-~~~~~y~-------~l~ell~~-----sDii~l~~Pl  210 (324)
T COG1052         145 RGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEK-ELGARYV-------DLDELLAE-----SDIISLHCPL  210 (324)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHh-hcCceec-------cHHHHHHh-----CCEEEEeCCC
Confidence            47789899  99999999999999999999998765 23333 4554433       23333332     676644 444


Q ss_pred             hH-H----HHHHHHhhccCcEEEEEcc
Q 043295          113 GE-M----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 ~~-~----~~~~~~~l~~~G~~v~~g~  134 (223)
                      .+ +    -...+..|++++.+|-++-
T Consensus       211 t~~T~hLin~~~l~~mk~ga~lVNtaR  237 (324)
T COG1052         211 TPETRHLINAEELAKMKPGAILVNTAR  237 (324)
T ss_pred             ChHHhhhcCHHHHHhCCCCeEEEECCC
Confidence            43 2    2356778888888887764

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.52  E-value=3.1  Score=33.10  Aligned_cols=38  Identities=21%  Similarity=0.042  Sum_probs=31.7

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHH
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK   75 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~   75 (223)
                      ++|.|.  |.+|...++.+...|.+|+..+.+++..+.++
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~   47 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALR   47 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            578888  89999999998899999999999887655443

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=93.47  E-value=0.61  Score=34.78  Aligned_cols=92  Identities=16%  Similarity=0.244  Sum_probs=57.5

Q ss_pred             EEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhCCCCccEEEc----
Q 043295           39 KVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYFPDGIDVYFD----  109 (223)
Q Consensus        39 ~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid----  109 (223)
                      +||=. ++.|..+..+++.. +++|++++.+++..+.+++.+   |...-+..... ++.+.   ..++.+|+|+.    
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~-d~~~~---~~~~~fD~I~~~~~l   77 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYR-DSAKD---PFPDTYDLVFGFEVI   77 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEec-ccccC---CCCCCCCEeehHHHH
Confidence            45555 77888888999887 579999999988777776322   32211111111 11110   11236898874    


Q ss_pred             -CCCh--HHHHHHHHhhccCcEEEEEcc
Q 043295          110 -NVGG--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       110 -~~g~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                       ++..  ..+..+.+.|+|+|.++....
T Consensus        78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       78 HHIKDKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             HhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence             2332  357788899999999987654

>PRK06701 short chain dehydrogenase; Provisional

Probab=93.47  E-value=0.5  Score=36.86  Aligned_cols=78  Identities=15%  Similarity=0.156  Sum_probs=45.4

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH-HHHHHHH---hhCCCe-e--eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE-KVAILKE---KLGFDD-A--FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~-~~~~~~~---~~g~~~-~--~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -++.++||.   |++|...++.....|++|+.++++.. ..+.+.+   ..|... .  .|-.+.+.+.+.+.+...  +
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~  123 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG  123 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            346789999   78999988888888999999887643 2222221   223221 1  233332122222322221  2


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|++|.+.|
T Consensus       124 ~iD~lI~~Ag  133 (290)
T PRK06701        124 RLDILVNNAA  133 (290)
T ss_pred             CCCEEEECCc
Confidence            6899998776

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.46  E-value=1  Score=34.88  Aligned_cols=90  Identities=17%  Similarity=0.113  Sum_probs=62.3

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      -+|++....+..|..+.  -.|.+|+|.   ..+|.-.+.+....|++|+...+...                     ++
T Consensus       131 ~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L  189 (279)
T PRK14178        131 FAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NL  189 (279)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HH
Confidence            35666566666666655  678899888   48899988898889998888664321                     22


Q ss_pred             HHHHHHhCCCCccEEEcCCChHH-HHHHHHhhccCcEEEEEccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEM-LEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .+.+++     .|+++.++|... +..  +.+++|..++.+|..
T Consensus       190 ~~~~~~-----ADIvI~Avgk~~lv~~--~~vk~GavVIDVgi~  226 (279)
T PRK14178        190 KAELRQ-----ADILVSAAGKAGFITP--DMVKPGATVIDVGIN  226 (279)
T ss_pred             HHHHhh-----CCEEEECCCcccccCH--HHcCCCcEEEEeecc
Confidence            222322     899999998542 332  337999999999865

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=93.46  E-value=1.2  Score=35.63  Aligned_cols=95  Identities=19%  Similarity=0.147  Sum_probs=60.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV-  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~-  111 (223)
                      .++.+||=. ++.|..+..+++..+ .+|++++.+++-++.+++......+ ..... +.. .+ ....+.+|+|+.+- 
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i-~~i~g-D~e-~l-p~~~~sFDvVIs~~~  187 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC-KIIEG-DAE-DL-PFPTDYADRYVSAGS  187 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCC-eEEec-cHH-hC-CCCCCceeEEEEcCh
Confidence            467788777 777988888888764 5999999998888877733221111 11111 111 11 11123699887532 


Q ss_pred             ----Ch--HHHHHHHHhhccCcEEEEEc
Q 043295          112 ----GG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 ----g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                          ..  ..++.+.+.|++||+++.++
T Consensus       188 L~~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        188 IEYWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             hhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence                11  35788899999999998765

>PRK04266 fibrillarin; Provisional

Probab=93.45  E-value=1.2  Score=33.40  Aligned_cols=95  Identities=16%  Similarity=0.096  Sum_probs=58.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCC-C--eeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGF-D--DAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~-~--~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      +++++||=. .+.|.....+++..+ .+|++++.++..++.+.+.... .  ..+..+.. .. ...... .+.+|+++-
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~-~~-~~~~~l-~~~~D~i~~  147 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADAR-KP-ERYAHV-VEKVDVIYQ  147 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCC-Cc-chhhhc-cccCCEEEE
Confidence            788888777 777888888888774 4899999999776655411110 1  11211111 10 000011 125999984


Q ss_pred             CCChH-----HHHHHHHhhccCcEEEEE
Q 043295          110 NVGGE-----MLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       110 ~~g~~-----~~~~~~~~l~~~G~~v~~  132 (223)
                      ....+     .+..+.+.|+|||+++..
T Consensus       148 d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        148 DVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             CCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            33321     256788899999999884

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=93.45  E-value=1  Score=35.09  Aligned_cols=43  Identities=23%  Similarity=0.171  Sum_probs=34.3

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHH-HHHHHHhhCCCe
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEK-VAILKEKLGFDD   82 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~-~~~~~~~~g~~~   82 (223)
                      +|-+.  |.+|.-.++-+...|..|++..+++++ .+.++ ..|+..
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~-~~Ga~~   47 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLA-AAGATV   47 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHH-HcCCcc
Confidence            34445  888888888888889999999999998 77777 777643

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.45  E-value=1  Score=33.14  Aligned_cols=33  Identities=18%  Similarity=0.226  Sum_probs=27.2

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGT   67 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~   67 (223)
                      -...+|+|.  |++|..+++.....|. +++.++..
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            356788888  9999999999999998 77777744

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.45  E-value=0.91  Score=35.62  Aligned_cols=90  Identities=16%  Similarity=0.146  Sum_probs=63.7

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE--C-chHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS--G-AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~--g-~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      -+|++.......|..+.  -.|++|.|.  | .+|.-.+.+....|++|+...+...                     +.
T Consensus       138 ~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~---------------------~l  196 (301)
T PRK14194        138 LTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST---------------------DA  196 (301)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC---------------------CH
Confidence            45666666666666666  689999988  4 8999999999999999988753321                     12


Q ss_pred             HHHHHHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .+.+++     .|+|+-++|.+ .+...|  +++|..++.+|..
T Consensus       197 ~e~~~~-----ADIVIsavg~~~~v~~~~--ik~GaiVIDvgin  233 (301)
T PRK14194        197 KALCRQ-----ADIVVAAVGRPRLIDADW--LKPGAVVIDVGIN  233 (301)
T ss_pred             HHHHhc-----CCEEEEecCChhcccHhh--ccCCcEEEEeccc
Confidence            222222     78999999874 344333  8899999999854

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=93.40  E-value=0.33  Score=39.42  Aligned_cols=54  Identities=20%  Similarity=0.214  Sum_probs=39.8

Q ss_pred             hhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHH
Q 043295           15 FANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNE   69 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~   69 (223)
                      ++.+....+.+- .++....  -+|.+|.|.  |.||..+++.+...|++|++++.+..
T Consensus       184 ~aTg~Gv~~~~~-~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g  241 (411)
T COG0334         184 EATGYGVFYAIR-EALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG  241 (411)
T ss_pred             cccceehHHHHH-HHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            333333333333 4444444  389999999  99999999999988999999998876

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.40  E-value=0.91  Score=35.37  Aligned_cols=92  Identities=17%  Similarity=0.094  Sum_probs=64.9

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      -+|++....+..|..+.  -.|++++|.   ..||.=++.+....|++|+... +..                   . ++
T Consensus       134 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtich-s~T-------------------~-~l  192 (287)
T PRK14173        134 LEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAH-SKT-------------------Q-DL  192 (287)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeC-CCC-------------------C-CH
Confidence            35666666666666665  678999888   7899999999888899888644 211                   1 23


Q ss_pred             HHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      .+.+++     .|+++-++|.+.+- .-+.+++|..++.+|...
T Consensus       193 ~~~~~~-----ADIvIsAvGkp~~i-~~~~vk~GavVIDVGin~  230 (287)
T PRK14173        193 PAVTRR-----ADVLVVAVGRPHLI-TPEMVRPGAVVVDVGINR  230 (287)
T ss_pred             HHHHhh-----CCEEEEecCCcCcc-CHHHcCCCCEEEEccCcc
Confidence            333333     89999999976442 456789999999998654

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.38  E-value=0.84  Score=35.41  Aligned_cols=91  Identities=21%  Similarity=0.110  Sum_probs=63.5

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      -.|++....+..|..+.  -.|++++|.   ..||.=.+.+....|++|+ ++++..+                    ++
T Consensus       136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs~T~--------------------~l  194 (281)
T PRK14183        136 FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHIFTK--------------------DL  194 (281)
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCCc--------------------CH
Confidence            45666666666666665  689999999   4899999999888899887 4433211                    22


Q ss_pred             HHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .+.+++     .|+++-++|.+.+ -.-+.+++|..++.+|..
T Consensus       195 ~~~~~~-----ADIvV~AvGkp~~-i~~~~vk~gavvIDvGin  231 (281)
T PRK14183        195 KAHTKK-----ADIVIVGVGKPNL-ITEDMVKEGAIVIDIGIN  231 (281)
T ss_pred             HHHHhh-----CCEEEEecCcccc-cCHHHcCCCcEEEEeecc
Confidence            222332     8999999997644 235678899999999864

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=93.38  E-value=0.82  Score=39.03  Aligned_cols=33  Identities=24%  Similarity=0.179  Sum_probs=29.1

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCH
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTN   68 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~   68 (223)
                      .|++|.|+  |.+|...++.++..|.+|++.+++.
T Consensus       139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~  173 (526)
T PRK13581        139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI  173 (526)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence            36789888  9999999999999999999998753

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.35  E-value=0.46  Score=38.89  Aligned_cols=77  Identities=23%  Similarity=0.236  Sum_probs=47.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHH------HHHHhh-CCCee-eecCCcccHHHHHHHhCCCC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVA------ILKEKL-GFDDA-FNYKEETDLKATLKRYFPDG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~------~~~~~~-g~~~~-~~~~~~~~~~~~i~~~~~~~  103 (223)
                      ..+.+|+|.   |.+|..+++.+...|++|++++++..+.+      ...+.. ++..+ .|..+.+.+...++.. +++
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-~~~  136 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE-GDP  136 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh-CCC
Confidence            456789999   88999998888888999999998765421      111011 22222 3444431233333322 116


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+||+|.+
T Consensus       137 ~D~Vi~~aa  145 (390)
T PLN02657        137 VDVVVSCLA  145 (390)
T ss_pred             CcEEEECCc
Confidence            999999886

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.29  E-value=0.51  Score=35.26  Aligned_cols=35  Identities=20%  Similarity=0.204  Sum_probs=30.1

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHH
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNE   69 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~   69 (223)
                      -.|.+|+|.  |.||..+++.+...|+++++++.+..
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            468899999  99999999999999998888775544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.29  E-value=1  Score=35.00  Aligned_cols=92  Identities=14%  Similarity=0.038  Sum_probs=65.0

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      -+||+.......|..+.  -.|++++|.   ..+|.=++.+....|++|+... +..                   . ++
T Consensus       136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtich-s~T-------------------~-~l  194 (284)
T PRK14170        136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAH-SRT-------------------K-DL  194 (284)
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC-CCC-------------------C-CH
Confidence            35666666666666666  679999998   7889999999988899888654 211                   1 23


Q ss_pred             HHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      .+.+++     .|+++-++|...+ -.-+.+++|..++.+|...
T Consensus       195 ~~~~~~-----ADIvI~AvG~~~~-i~~~~vk~GavVIDvGin~  232 (284)
T PRK14170        195 PQVAKE-----ADILVVATGLAKF-VKKDYIKPGAIVIDVGMDR  232 (284)
T ss_pred             HHHHhh-----CCEEEEecCCcCc-cCHHHcCCCCEEEEccCcc
Confidence            333333     8999999997644 2356788999999998653

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=93.27  E-value=0.83  Score=33.39  Aligned_cols=75  Identities=15%  Similarity=0.120  Sum_probs=47.3

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC--Cee---eecCCcccHHHH-HHHhCC--CCcc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF--DDA---FNYKEETDLKAT-LKRYFP--DGID  105 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~--~~~---~~~~~~~~~~~~-i~~~~~--~~~d  105 (223)
                      .+..+|.   +++|.+..|.....|++|.+.+.+...-+.....+|.  ++.   .|-.+. .-.+. +.+...  +.++
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a-~~v~~~l~e~~k~~g~ps   92 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKA-HDVQNTLEEMEKSLGTPS   92 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcH-HHHHHHHHHHHHhcCCCc
Confidence            3445666   7999999999999999999988666544433326665  332   233333 22222 222222  2699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      ++++|.|
T Consensus        93 vlVncAG   99 (256)
T KOG1200|consen   93 VLVNCAG   99 (256)
T ss_pred             EEEEcCc
Confidence            9999998

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.27  E-value=0.83  Score=35.95  Aligned_cols=76  Identities=17%  Similarity=0.149  Sum_probs=45.1

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH-HHHHHHHH---hhCCCee---eecCCcccH---HHHHHHhCC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN-EKVAILKE---KLGFDDA---FNYKEETDL---KATLKRYFP  101 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~-~~~~~~~~---~~g~~~~---~~~~~~~~~---~~~i~~~~~  101 (223)
                      -.+++++|+   +++|...++.....|++|+..+++. .+.+.+.+   ..|....   .|-.+.+..   .+.+.+  -
T Consensus        10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~--~   87 (306)
T PRK07792         10 LSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG--L   87 (306)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH--h
Confidence            356789999   8999999988888899999887643 23322221   2333221   222222112   222223  2


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|++|++.|
T Consensus        88 g~iD~li~nAG   98 (306)
T PRK07792         88 GGLDIVVNNAG   98 (306)
T ss_pred             CCCCEEEECCC
Confidence            47999999886

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=93.24  E-value=0.5  Score=35.74  Aligned_cols=72  Identities=18%  Similarity=0.290  Sum_probs=44.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-e--eeecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-D--AFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~--~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      +++++||.   |++|...++.....|++|+.++++.     .. ..+.. .  ..|-.+.+.+.+.+.+...  +.+|++
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~-----~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF-----LT-QEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVL   80 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch-----hh-hcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46789999   7899999988888899999999775     22 22221 1  1233332123333332221  368999


Q ss_pred             EcCCCh
Q 043295          108 FDNVGG  113 (223)
Q Consensus       108 id~~g~  113 (223)
                      |.+.|.
T Consensus        81 i~~ag~   86 (252)
T PRK08220         81 VNAAGI   86 (252)
T ss_pred             EECCCc
Confidence            998773

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=93.23  E-value=1.3  Score=38.57  Aligned_cols=91  Identities=10%  Similarity=0.112  Sum_probs=62.5

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChHH
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEM  115 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~  115 (223)
                      ++|+|.  |.+|+..++..+..|.++++++.++++.+.++ +.|...++  .+. .-.+.+++.-=+..|.++-+.+++.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~-~~g~~v~~--GDa-t~~~~L~~agi~~A~~vv~~~~d~~  476 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMR-KYGYKVYY--GDA-TQLELLRAAGAEKAEAIVITCNEPE  476 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHH-hCCCeEEE--eeC-CCHHHHHhcCCccCCEEEEEeCCHH
Confidence            467777  99999999999999999999999999999998 77764332  222 2223344332237899998888742


Q ss_pred             H----HHHHHhhccCcEEEEE
Q 043295          116 L----EAAVANMNLFGRVAAC  132 (223)
Q Consensus       116 ~----~~~~~~l~~~G~~v~~  132 (223)
                      .    -...+...|+.+++.-
T Consensus       477 ~n~~i~~~~r~~~p~~~IiaR  497 (601)
T PRK03659        477 DTMKIVELCQQHFPHLHILAR  497 (601)
T ss_pred             HHHHHHHHHHHHCCCCeEEEE
Confidence            2    2334455666666543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=93.19  E-value=1.4  Score=37.97  Aligned_cols=91  Identities=13%  Similarity=0.123  Sum_probs=60.2

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChHH
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEM  115 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~  115 (223)
                      ++++|.  |.+|+..++..+..|.++++++.++++.+.++ +.|...+.  .+. .-.+.+++..=+.+|.++-+++++.
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~-~~g~~~i~--GD~-~~~~~L~~a~i~~a~~viv~~~~~~  493 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELR-ERGIRAVL--GNA-ANEEIMQLAHLDCARWLLLTIPNGY  493 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-HCCCeEEE--cCC-CCHHHHHhcCccccCEEEEEcCChH
Confidence            567777  99999999999999999999999999999998 77764443  222 1223333332236887777666532


Q ss_pred             ----HHHHHHhhccCcEEEEE
Q 043295          116 ----LEAAVANMNLFGRVAAC  132 (223)
Q Consensus       116 ----~~~~~~~l~~~G~~v~~  132 (223)
                          .-.+.+...++.+++.-
T Consensus       494 ~~~~iv~~~~~~~~~~~iiar  514 (558)
T PRK10669        494 EAGEIVASAREKRPDIEIIAR  514 (558)
T ss_pred             HHHHHHHHHHHHCCCCeEEEE
Confidence                22334445555555543

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=93.15  E-value=2.2  Score=30.20  Aligned_cols=84  Identities=20%  Similarity=0.237  Sum_probs=55.4

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHH-HHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNE-KVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      ++++|.|.  |.-|.+-++-.|-.|.+|+...+... ..+.++ +-|... .      +..+.+++     .|+|+-.+.
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-~~Gf~v-~------~~~eAv~~-----aDvV~~L~P   69 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-ADGFEV-M------SVAEAVKK-----ADVVMLLLP   69 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-HTT-EC-C------EHHHHHHC------SEEEE-S-
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-HCCCee-c------cHHHHHhh-----CCEEEEeCC
Confidence            57889999  99999999999999999998887765 667777 777632 2      44555543     889988887


Q ss_pred             hHH----H-HHHHHhhccCcEEEEE
Q 043295          113 GEM----L-EAAVANMNLFGRVAAC  132 (223)
Q Consensus       113 ~~~----~-~~~~~~l~~~G~~v~~  132 (223)
                      .+.    + +.....|+++..++..
T Consensus        70 D~~q~~vy~~~I~p~l~~G~~L~fa   94 (165)
T PF07991_consen   70 DEVQPEVYEEEIAPNLKPGATLVFA   94 (165)
T ss_dssp             HHHHHHHHHHHHHHHS-TT-EEEES
T ss_pred             hHHHHHHHHHHHHhhCCCCCEEEeC
Confidence            543    3 4445678888777654

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=93.14  E-value=0.45  Score=39.97  Aligned_cols=73  Identities=23%  Similarity=0.296  Sum_probs=49.7

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCH---------------------HHHHHHHHhhCCCeeeecCCccc-
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTN---------------------EKVAILKEKLGFDDAFNYKEETD-   91 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~---------------------~~~~~~~~~~g~~~~~~~~~~~~-   91 (223)
                      .+++|+|.  |+.|+.+++.++..|.+|+.....+                     ...+.++ ++|++..++..-..+ 
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~-~~Gv~~~~~~~v~~~~  218 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFT-AMGIEFHLNCEVGRDI  218 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHH-HCCCEEECCCEeCCcc
Confidence            56889999  9999999999999999988877543                     2345666 788765544322101 


Q ss_pred             HHHHHHHhCCCCccEEEcCCCh
Q 043295           92 LKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        92 ~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      ..+.+   . .++|.||.++|.
T Consensus       219 ~~~~~---~-~~~D~vilAtGa  236 (467)
T TIGR01318       219 SLDDL---L-EDYDAVFLGVGT  236 (467)
T ss_pred             CHHHH---H-hcCCEEEEEeCC
Confidence            11111   1 158999999986

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=93.13  E-value=1.1  Score=36.05  Aligned_cols=40  Identities=18%  Similarity=0.101  Sum_probs=32.3

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHH
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL   74 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~   74 (223)
                      ..+.+|||+   |.+|..+++.....|++|++++++..+.+.+
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~   50 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHL   50 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            456789999   7899999988888899999998877655443

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=93.12  E-value=0.98  Score=33.96  Aligned_cols=98  Identities=16%  Similarity=0.173  Sum_probs=63.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCC-Ce-eeec----CCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGF-DD-AFNY----KEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~-~~-~~~~----~~~~~~~~~i~~~~~~~~d~  106 (223)
                      +.|++||=+ +++|--|+..++ .|+ +|+.+..++.-+++++  ++. .. ....    --. +..+.++++-+.-||.
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~-rGA~~VitvEkdp~VLeLa~--lNPwSr~l~~~~i~iilG-D~~e~V~~~~D~sfDa  208 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALE-RGAIHVITVEKDPNVLELAK--LNPWSRELFEIAIKIILG-DAYEVVKDFDDESFDA  208 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHH-cCCcEEEEEeeCCCeEEeec--cCCCCccccccccEEecc-cHHHHHhcCCccccce
Confidence            579999998 999988877555 466 9999998777655553  222 11 1000    011 4556666655557998


Q ss_pred             EEcCC------Ch----HHHHHHHHhhccCcEEEEEcccc
Q 043295          107 YFDNV------GG----EMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       107 vid~~------g~----~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      +|.-.      |.    +-+...++.|++||++..+...+
T Consensus       209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P  248 (287)
T COG2521         209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP  248 (287)
T ss_pred             EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC
Confidence            87422      21    24667889999999998765443

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=93.05  E-value=1.1  Score=34.66  Aligned_cols=92  Identities=10%  Similarity=-0.031  Sum_probs=59.7

Q ss_pred             CCCEEEEE-CchHHHHHHHHHHc----CCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           36 KGEKVFVS-GAYGHLVGQYAKLG----GCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        36 ~g~~vlI~-g~vG~~a~qla~~~----g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      +..+||=. .|.|..+.++++..    +..+++++.++.-.+.+++..........+.. +    + .+..+.+|+|+..
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~-~----l-p~~~~sfD~I~~~  158 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSH-R----L-PFADQSLDAIIRI  158 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecc-c----C-CCcCCceeEEEEe
Confidence            44566666 67898888888764    34799999999888888733221111111100 1    0 0112369999876


Q ss_pred             CChHHHHHHHHhhccCcEEEEEc
Q 043295          111 VGGEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       111 ~g~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      .....+....+.|+++|.++.+.
T Consensus       159 ~~~~~~~e~~rvLkpgG~li~~~  181 (272)
T PRK11088        159 YAPCKAEELARVVKPGGIVITVT  181 (272)
T ss_pred             cCCCCHHHHHhhccCCCEEEEEe
Confidence            55456778889999999999875

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=93.04  E-value=1.5  Score=31.51  Aligned_cols=91  Identities=19%  Similarity=0.108  Sum_probs=56.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC-eeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD-DAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .++++||=. .+.|..+..+++.. .+|++++.+++..+.+++.+   +.. .++..    ++.+    ...+.+|+|+-
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~----d~~~----~~~~~fD~Vi~   88 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKG-KCILTTDINPFAVKELRENAKLNNVGLDVVMT----DLFK----GVRGKFDVILF   88 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCceEEEEc----cccc----ccCCcccEEEE
Confidence            566777777 88898888888754 49999999998877776322   221 11111    1111    11225888874


Q ss_pred             CCC----------------------------hHHHHHHHHhhccCcEEEEEcc
Q 043295          110 NVG----------------------------GEMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       110 ~~g----------------------------~~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      ...                            ...+..+.+.|+++|+++.+..
T Consensus        89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~  141 (179)
T TIGR00537        89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS  141 (179)
T ss_pred             CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence            321                            0135667789999999888753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK12746 short chain dehydrogenase; Provisional

Probab=93.04  E-value=1.1  Score=33.95  Aligned_cols=78  Identities=14%  Similarity=0.205  Sum_probs=46.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEE-ecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHh---C--
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGS-AGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRY---F--  100 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~-~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~---~--  100 (223)
                      .+.+++|.   |++|..+++.....|++|+.. .++.++.+...+++   +... +  .|-.+.+++...+.+.   .  
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   84 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQI   84 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhcc
Confidence            35789999   899999998888889988764 56665544332132   2211 1  2333332333333322   1  


Q ss_pred             --C-CCccEEEcCCCh
Q 043295          101 --P-DGIDVYFDNVGG  113 (223)
Q Consensus       101 --~-~~~d~vid~~g~  113 (223)
                        + +++|++|.+.|.
T Consensus        85 ~~~~~~id~vi~~ag~  100 (254)
T PRK12746         85 RVGTSEIDILVNNAGI  100 (254)
T ss_pred             ccCCCCccEEEECCCC
Confidence              2 268999988863

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=93.03  E-value=3.4  Score=33.79  Aligned_cols=92  Identities=23%  Similarity=0.290  Sum_probs=60.1

Q ss_pred             CCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEE-EcC
Q 043295           37 GEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVY-FDN  110 (223)
Q Consensus        37 g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~v-id~  110 (223)
                      +.+|+=. +++|..++.+++..++ +|++++.+++-.+.+++.   .+.+.+.-...  +....+..  .+.+|+| +|.
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~--Da~~~l~~--~~~fD~V~lDP  133 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNK--DANALLHE--ERKFDVVDIDP  133 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhh--hHHHHHhh--cCCCCEEEECC
Confidence            3555555 9999999999998886 999999999887777632   24432211111  23222322  2368977 787


Q ss_pred             CCh--HHHHHHHHhhccCcEEEEE
Q 043295          111 VGG--EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       111 ~g~--~~~~~~~~~l~~~G~~v~~  132 (223)
                      .|.  +.++.++..++++|.+...
T Consensus       134 ~Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        134 FGSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             CCCcHHHHHHHHHHhcCCCEEEEE
Confidence            775  4567778888887665544

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.02  E-value=0.69  Score=35.04  Aligned_cols=75  Identities=16%  Similarity=0.202  Sum_probs=43.6

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH-HHHHHHHh---hCCC-ee--eecCCcccHHHHHHHhCC--CCcc
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE-KVAILKEK---LGFD-DA--FNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~-~~~~~~~~---~g~~-~~--~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      ++++|.   |++|..+++.....|++|+.++++.. +.+...+.   .+.. .+  .|..+.+++.+.+.+...  +++|
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRID   82 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence            568888   89999888888888999999986543 22222112   2221 11  344433233332333221  2689


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++.+.|
T Consensus        83 ~vi~~ag   89 (256)
T PRK12745         83 CLVNNAG   89 (256)
T ss_pred             EEEECCc
Confidence            9999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	223
4hfj_A	351	X-ray Crystal Structure Of A Double Bond Reductase		4e-61
2j3h_A	345	Crystal Structure Of Arabidopsis Thaliana Double Bo		5e-60
1v3t_A	333	Crystal Structure Of Leukotriene B4 12- Hydroxydehy		3e-36
2y05_A	328	Crystal Structure Of Human Leukotriene B4 12-Hydrox		6e-36
1zsv_A	349	Crystal Structure Of Human Nadp-Dependent Leukotrie		7e-36
4b7c_A	336	Crystal Structure Of Hypothetical Protein Pa1648 Fr		2e-33
2zb4_A	357	Crystal Structure Of Human 15-Ketoprostaglandin Del		3e-23
2w4q_A	357	Crystal Structure Of Human Zinc-Binding Alcohol Deh		3e-23
2zb3_A	353	Crystal Structure Of Mouse 15-Ketoprostaglandin Del		4e-21
1vj1_A	363	Crystal Structure Of Putative Nadph-Dependent Oxido		3e-18
2x7h_A	370	Crystal Structure Of The Human Mgc45594 Gene Produc		2e-16
2c0c_A	362	Structure Of The Mgc45594 Gene Product Length = 362		2e-16
2wek_A	341	Crystal Structure Of The Human Mgc45594 Gene Produc		2e-16
3qwa_A	334	Crystal Structure Of Saccharomyces Cerevisiae Zeta-		4e-05
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		1e-04
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-04
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-04
2vz8_A	2512	Crystal Structure Of Mammalian Fatty Acid Synthase		3e-04

>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From Nicotiana Tabacum Length = 351

Iteration: 1
 Score =  231 bits (588), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 110/209 (52%), Positives = 151/209 (72%), Gaps = 5/209 (2%)
Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY GF+E+   +KGE VFVS   GA G LVGQ+AK+ GCYVVGSAG+ EKV +L
Sbjct: 135 GMPGMTAYAGFHEVCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLL 194
Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K K GFD+AFNYKEE DL A LKRYFPDGID+YF+NVGG+ML+A + NM L+GR+A CG+
Sbjct: 195 KSKFGFDEAFNYKEEQDLSAALKRYFPDGIDIYFENVGGKMLDAVLVNMKLYGRIAVCGM 254
Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           IS+        V N+  ++ KRI+++GFL  D++ L+  ++ M    ++AGK+  +ED++
Sbjct: 255 ISQYNLEQTEGVHNLFCLITKRIRMEGFLVFDYYHLYPKYLEMVIPQIKAGKVVYVEDVA 314
Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
           +G++S P+A  G F G NIGK+ V ++ E
Sbjct: 315 HGLESAPTALVGLFSGRNIGKQVVMVSRE 343

>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond Reductase (At5g16970)-Apo Form Length = 345

Iteration: 1
 Score =  227 bits (578), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/209 (52%), Positives = 149/209 (71%), Gaps = 5/209 (2%)
Query: 20  GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY GFYE+   ++GE V+VS   GA G LVGQ AK+ GCYVVGSAG+ EKV +L
Sbjct: 137 GMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLL 196
Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K K GFDDAFNYKEE+DL A LKR FP+GID+YF+NVGG+ML+A + NMN+ GR+A CG+
Sbjct: 197 KTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGM 256
Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           IS+    ++  V N+ +I+YKR +IQGF+ +D +D +  F+      +R GKI  +ED++
Sbjct: 257 ISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVA 316
Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
           +G++  P A  G F G N+GK+ V +A E
Sbjct: 317 DGLEKAPEALVGLFHGKNVGKQVVVVARE 345

>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12- Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase Length = 333

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 121/206 (58%), Gaps = 8/206 (3%)
Query: 20  GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY G  E+   + GE V VS   GA G +VGQ AKL GC VVG+AG++EK+A L
Sbjct: 127 GMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL 186
Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K+ +GFD AFNYK    L+  LK+  PDG D YFDNVGGE L   ++ M  FG++A CG 
Sbjct: 187 KQ-IGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGA 245
Query: 135 ISECADASKRAV-PNMIDIVYKRIKIQGFLSTD-HFDLHQDFISMTCDALRAGKIQPLED 192
           IS      +    P+   I+YK+++I+GF+      D+ +  +      +  GKIQ  E 
Sbjct: 246 ISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEH 305
Query: 193 ISNGVDSIPSAFTGFFRGDNIGKKFV 218
           ++ G +++P+AF     G N+GK  V
Sbjct: 306 VTKGFENMPAAFIEMLNGANLGKAVV 331

>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4 12-Hydroxydehydrogenase In Complex With Nadp And Raloxifene Length = 328

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 116/207 (56%), Gaps = 8/207 (3%)
Query: 20  GTSGFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY G  EI   + GE V V   +GA G +VGQ AKL GC VVG+ G++EKVA L
Sbjct: 122 GMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYL 181
Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
            +KLGFD  FNYK    L+ TLK+  PDG D YFDNVGGE     +  M  FGR+A CG 
Sbjct: 182 -QKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGA 240
Query: 135 ISECADASKRAVPNMIDIV-YKRIKIQGFLSTD-HFDLHQDFISMTCDALRAGKIQPLED 192
           IS              +IV Y+ ++++ F+      D  Q  +      +  GKIQ  E 
Sbjct: 241 ISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEY 300
Query: 193 ISNGVDSIPSAFTGFFRGDNIGKKFVR 219
           I  G +++P+AF G  +GDN+GK  V+
Sbjct: 301 IIEGFENMPAAFMGMLKGDNLGKTIVK 327

>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4 12- Hydroxydehydrogenase Length = 349

Iteration: 1
 Score =  146 bits (369), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 116/207 (56%), Gaps = 8/207 (3%)
Query: 20  GTSGFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY G  EI   + GE V V   +GA G +VGQ AKL GC VVG+ G++EKVA L
Sbjct: 143 GMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYL 202
Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
            +KLGFD  FNYK    L+ TLK+  PDG D YFDNVGGE     +  M  FGR+A CG 
Sbjct: 203 -QKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGA 261
Query: 135 ISECADASKRAVPNMIDIV-YKRIKIQGFLSTD-HFDLHQDFISMTCDALRAGKIQPLED 192
           IS              +IV Y+ ++++ F+      D  Q  +      +  GKIQ  E 
Sbjct: 262 ISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEY 321
Query: 193 ISNGVDSIPSAFTGFFRGDNIGKKFVR 219
           I  G +++P+AF G  +GDN+GK  V+
Sbjct: 322 IIEGFENMPAAFMGMLKGDNLGKTIVK 348

>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From Pseudomonas Aeruginosa. Length = 336

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 117/221 (52%), Gaps = 7/221 (3%)
Query: 6   EESHRSCYVFANGAGTSGFTAYVGFYEISQK--GEKVFVSGA---YGHLVGQYAKLGGCY 60
           + S      + +  G +G TAY    ++ Q   GE V +SGA    G + GQ A+L GC 
Sbjct: 117 DPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCR 176
Query: 61  VVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAV 120
           VVG AG  EK   L E+LGFD A +YK E DL A LKR  P GIDV+FDNVGGE+L+  +
Sbjct: 177 VVGIAGGAEKCRFLVEELGFDGAIDYKNE-DLAAGLKRECPKGIDVFFDNVGGEILDTVL 235
Query: 121 ANMNLFGRVAACGVISECADASK-RAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTC 179
             +    R+  CG IS+  +    R   N + ++  R +++G +  D+     + +    
Sbjct: 236 TRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMA 295
Query: 180 DALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI 220
             L  GK+Q  EDI  G+++ P      F G+N GK  +++
Sbjct: 296 TWLAEGKLQSREDIVEGLETFPETLLKLFSGENFGKLVLKV 336

>pdb|2ZB4|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13- Reductase In Complex With Nadp And 15-Keto-Pge2 Length = 357

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 110/221 (49%), Gaps = 13/221 (5%)
Query: 15  FANGAGTSGFTAYVGFYE---ISQKGEKVFV----SGAYGHLVGQYAKLGGC-YVVGSAG 66
           F    G  G T+ +G  E   I+    K  V    +GA G + GQ     GC  VVG  G
Sbjct: 135 FLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICG 194
Query: 67  TNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLF 126
           T+EK  +L  +LGFD A NYK++ ++   L+   P G+DVYFDNVGG + +  ++ MN  
Sbjct: 195 THEKCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNEN 253
Query: 127 GRVAACGVISECADASKRAVP--NMIDIVYKRIKI--QGFLSTDHFDLHQDFISMTCDAL 182
             +  CG IS+         P    I+ + K   I  + FL  ++ D  +  I       
Sbjct: 254 SHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWF 313
Query: 183 RAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
           + GK++  E + NG++++ +AF     G NIGK+ V I+ E
Sbjct: 314 KEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISEE 354

>pdb|2W4Q|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And 18beta-Glycyrrhetinic Acid Length = 357

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 110/221 (49%), Gaps = 13/221 (5%)
Query: 15  FANGAGTSGFTAYVGFYE---ISQKGEKVFV----SGAYGHLVGQYAKLGGC-YVVGSAG 66
           F    G  G T+ +G  E   I+    K  V    +GA G + GQ     GC  VVG  G
Sbjct: 130 FLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICG 189
Query: 67  TNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLF 126
           T+EK  +L  +LGFD A NYK++ ++   L+   P G+DVYFDNVGG + +  ++ MN  
Sbjct: 190 THEKCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNEN 248
Query: 127 GRVAACGVISECADASKRAVP--NMIDIVYKRIKI--QGFLSTDHFDLHQDFISMTCDAL 182
             +  CG IS+         P    I+ + K   I  + FL  ++ D  +  I       
Sbjct: 249 SHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWF 308
Query: 183 RAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
           + GK++  E + NG++++ +AF     G NIGK+ V I+ E
Sbjct: 309 KEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISEE 349

>pdb|2ZB3|A Chain A, Crystal Structure Of Mouse 15-Ketoprostaglandin Delta-13- Reductase In Complex With Nadph Length = 353

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 108/219 (49%), Gaps = 13/219 (5%)
Query: 15  FANGAGTSGFTAYVGFYE---ISQKGEKVFV----SGAYGHLVGQYAKLGGC-YVVGSAG 66
           F    G  G T+ +G  E   IS    +  V    +GA G L GQ   L GC  VVG  G
Sbjct: 131 FLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICG 190
Query: 67  TNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLF 126
           T EK   L  +LGFD A NYK   ++   L+   P G+DVYFDNVGG++  A ++ MN  
Sbjct: 191 TQEKCLFLTSELGFDAAVNYKT-GNVAEQLREACPGGVDVYFDNVGGDISNAVISQMNEN 249
Query: 127 GRVAACGVISECAD--ASKRAVPNMIDIVYKRIKI--QGFLSTDHFDLHQDFISMTCDAL 182
             +  CG IS+ ++       +P  ++ + K   I  + F   ++ D  +  I       
Sbjct: 250 SHIILCGQISQYSNDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWF 309
Query: 183 RAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA 221
           + GK++  E ++ G++++  AF     G N+GK+ V I+
Sbjct: 310 KEGKLKVKETMAKGLENMGVAFQSMMTGGNVGKQIVCIS 348

>pdb|1VJ1|A Chain A, Crystal Structure Of Putative Nadph-Dependent Oxidoreductase From Mus Musculus At 2.10 A Resolution Length = 363

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 102/224 (45%), Gaps = 23/224 (10%)
Query: 15  FANGAGTSGFTAYVGFYE---ISQKGEKVFV----SGAYGHLVGQYAKLGGC-YVVGSAG 66
           F    G  G T+ +G  E   IS    +  V    +GA G L GQ   L GC  VVG  G
Sbjct: 141 FLGAIGXPGLTSLIGVQEKGHISAGSNQTXVVSGAAGACGSLAGQIGHLLGCSRVVGICG 200
Query: 67  TNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLF 126
           T EK   L  +LGFD A NYK   ++   L+   P G+DVYFDNVGG++    ++  N  
Sbjct: 201 TQEKCLFLTSELGFDAAVNYKT-GNVAEQLREACPGGVDVYFDNVGGDISNTVISQXNEN 259
Query: 127 GRVAACGVISE---------CADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISM 177
             +  CG IS+             +  A+    +I  +R     F   ++ D  +  I  
Sbjct: 260 SHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRER-----FTVLNYKDKFEPGILQ 314
Query: 178 TCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA 221
                + GK++  E ++ G+++   AF     G N+GK+ V I+
Sbjct: 315 LSQWFKEGKLKVKETVAKGLENXGVAFQSXXTGGNVGKQIVCIS 358

>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Fenoprofen Length = 370

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 19/217 (8%)
Query: 22  SGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE 76
           SG TAY+   E+    +G+KV V+   G  G    Q +K   C+V+G+  ++EK A LK 
Sbjct: 155 SGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS 214
Query: 77  KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
            LG D   NYK E  +   LK+ +P+G+DV +++VGG M + AV  +   GR+   G IS
Sbjct: 215 -LGCDRPINYKTE-PVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFIS 272
Query: 137 ----ECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKI---QP 189
                   +  +A      ++ K   +QGF    +   +Q  +S   +   +G +     
Sbjct: 273 GYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVD 332
Query: 190 LEDIS-----NGVDSIPSAFTGFFRGDNIGKKFVRIA 221
           L D+S      G++SI  A    + G N GK  V + 
Sbjct: 333 LGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELP 369

>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product Length = 362

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 19/217 (8%)
Query: 22  SGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE 76
           SG TAY+   E+    +G+KV V+   G  G    Q +K   C+V+G+  ++EK A LK 
Sbjct: 147 SGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS 206
Query: 77  KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
            LG D   NYK E  +   LK+ +P+G+DV +++VGG M + AV  +   GR+   G IS
Sbjct: 207 -LGCDRPINYKTE-PVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFIS 264
Query: 137 ----ECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKI---QP 189
                   +  +A      ++ K   +QGF    +   +Q  +S   +   +G +     
Sbjct: 265 GYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVD 324
Query: 190 LEDIS-----NGVDSIPSAFTGFFRGDNIGKKFVRIA 221
           L D+S      G++SI  A    + G N GK  V + 
Sbjct: 325 LGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELP 361

>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Diclofenac Length = 341

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 19/217 (8%)
Query: 22  SGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE 76
           SG TAY+   E+    +G+KV V+   G  G    Q +K   C+V+G+  ++EK A LK 
Sbjct: 126 SGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS 185
Query: 77  KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
            LG D   NYK E  +   LK+ +P+G+DV +++VGG M + AV  +   GR+   G IS
Sbjct: 186 -LGCDRPINYKTE-PVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFIS 243
Query: 137 ----ECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKI---QP 189
                   +  +A      ++ K   +QGF    +   +Q  +S   +   +G +     
Sbjct: 244 GYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVD 303
Query: 190 LEDIS-----NGVDSIPSAFTGFFRGDNIGKKFVRIA 221
           L D+S      G++SI  A    + G N GK  V + 
Sbjct: 304 LGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELP 340

>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Zeta-Crystallin-Like Quinone Oxidoreductase Zta1 Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 13/181 (7%)
Query: 35  QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETD 91
           +KG+ V +   +G  G ++ Q  K+ G + +  A T+EK+ I KE  G +   N  +E  
Sbjct: 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE-YGAEYLINASKEDI 205
Query: 92  LKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECAD--ASKRAVPNM 149
           L+  LK     G+D  FD+VG +  E ++A +   G   + G  S      +  R  P  
Sbjct: 206 LRQVLKFTNGKGVDASFDSVGKDTFEISLAALKRKGVFVSFGNASGLIPPFSITRLSPKN 265
Query: 150 IDIVYKRIKIQGFLS-TDHFDLHQD----FISMTCDALRAGKIQPLEDISNGVDSIPSAF 204
           I +V  R ++ G+++  + +  + D     ++     ++  K  PL D       I S  
Sbjct: 266 ITLV--RPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRTAAADIESRK 323
Query: 205 T 205
           T
Sbjct: 324 T 324

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Query: 14  VFANGAGTSGFTAYVGFYEISQ--KGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTN 68
           V   G    G TA    ++  +   G+ V +   +G  GH++  +A+  G  V+G+  T 
Sbjct: 121 VHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE 180
Query: 69  EKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGR 128
           EK A    KLG     NY  +   +   +     G+DV +D++G + L+ ++  +   G 
Sbjct: 181 EK-AETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGM 239
Query: 129 VAACGVISECADASK 143
            AA G  S  AD  +
Sbjct: 240 CAAYGHASGVADPIR 254

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 52  QYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV 111
           Q  ++ G   + +AG+ +K+  + EKLG    FNYK+E   +ATLK     G+++  D +
Sbjct: 165 QLTRMAGAIPLVTAGSQKKLQ-MAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCI 223
Query: 112 GGEMLEAAVANMNLFGRVAACGVI 135
           GG   E  V  + L GR    G++
Sbjct: 224 GGSYWEKNVNCLALDGRWVLYGLM 247

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 52  QYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV 111
           Q  ++ G   + +AG+ +K+  + EKLG    FNYK+E   +ATLK     G+++  D +
Sbjct: 181 QLTRMAGAIPLVTAGSQKKLQ-MAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCI 239
Query: 112 GGEMLEAAVANMNLFGRVAACGVI 135
           GG   E  V  + L GR    G++
Sbjct: 240 GGSYWEKNVNCLALDGRWVLYGLM 263

>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 15/199 (7%)
Query: 35   QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETD 91
            Q GE V +   SG  G      A   GC V  + G+ EK A L+ +    D   +    D
Sbjct: 1666 QPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRD 1725
Query: 92   L---KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPN 148
                +  L+     G+D+  +++  E L+A+V  +   GR    G      D S      
Sbjct: 1726 TSFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCLAQHGRFLEIGKF----DLSNNHALG 1781
Query: 149  MIDIVYKRIKIQGFLSTDHFD----LHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAF 204
            M  +  K +   G L    F+      Q+   +    ++ G +QPL+        + +AF
Sbjct: 1782 MA-VFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVEAAF 1840
Query: 205  TGFFRGDNIGKKFVRIAGE 223
                +G +IGK  +++  E
Sbjct: 1841 RYMAQGKHIGKVVIQVREE 1859

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	223
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	5e-98
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	7e-91
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	2e-85
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	2e-62
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	1e-19
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	3e-19
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	4e-19
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	8e-19
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	6e-18
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	4e-17
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	9e-17
3gms_A	340	Putative NADPH:quinone reductase; structural genom	4e-16
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	6e-16
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	1e-14
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	2e-14
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	2e-14
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	2e-14
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	4e-14
4eye_A	342	Probable oxidoreductase; structural genomics, niai	8e-14
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	2e-13
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	3e-13
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	3e-13
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	2e-12
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	2e-12
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	4e-12
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	7e-12
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	5e-11
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	6e-11
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	2e-10
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	3e-10
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	9e-10
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	3e-09
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	6e-08
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	1e-07
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	1e-07
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	2e-07
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	2e-07
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	5e-07
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	3e-06
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	4e-06
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	7e-06
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	7e-06
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	1e-05
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	1e-05
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	7e-05

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* Length = 345

 Score =  287 bits (738), Expect = 5e-98
 Identities = 110/209 (52%), Positives = 148/209 (70%), Gaps = 5/209 (2%)

Query: 20  GTSGFTAYVGFYEISQ--KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY GFYE+    +GE V+VS   GA G LVGQ AK+ GCYVVGSAG+ EKV +L
Sbjct: 137 GMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLL 196

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K K GFDDAFNYKEE+DL A LKR FP+GID+YF+NVGG+ML+A + NMN+ GR+A CG+
Sbjct: 197 KTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGM 256

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
           IS+    ++  V N+ +I+YKR +IQGF+ +D +D +  F+      +R GKI  +ED++
Sbjct: 257 ISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVA 316

Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
           +G++  P A  G F G N+GK+ V +A E
Sbjct: 317 DGLEKAPEALVGLFHGKNVGKQVVVVARE 345

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score =  269 bits (690), Expect = 7e-91
 Identities = 87/207 (42%), Positives = 119/207 (57%), Gaps = 8/207 (3%)

Query: 20  GTSGFTAYVGFYEISQ--KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G  G TAY G  E+     GE V VS   GA G +VGQ AKL GC VVG+AG++EK+A L
Sbjct: 127 GMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL 186

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           K+ +GFD AFNYK    L+  LK+  PDG D YFDNVGGE L   ++ M  FG++A CG 
Sbjct: 187 KQ-IGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGA 245

Query: 135 ISE-CADASKRAVPNMIDIVYKRIKIQGFLSTDHF-DLHQDFISMTCDALRAGKIQPLED 192
           IS           P+   I+YK+++I+GF+      D+ +  +      +  GKIQ  E 
Sbjct: 246 ISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEH 305

Query: 193 ISNGVDSIPSAFTGFFRGDNIGKKFVR 219
           ++ G +++P+AF     G N+GK  V 
Sbjct: 306 VTKGFENMPAAFIEMLNGANLGKAVVT 332

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score =  256 bits (656), Expect = 2e-85
 Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 13/216 (6%)

Query: 20  GTSGFTAYVGFYEISQ----KGEKVFVS---GAYGHLVGQYAKLGGCY-VVGSAGTNEKV 71
           G  G T+ +G  E         + + VS   GA G + GQ     GC  VVG  GT+EK 
Sbjct: 140 GMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKC 199

Query: 72  AILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAA 131
            +L  +LGFD A NYK++ ++   L+   P G+DVYFDNVGG + +  ++ MN    +  
Sbjct: 200 ILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHIIL 258

Query: 132 CGVIS----ECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKI 187
           CG IS    +       +         + I  + FL  ++ D  +  I       + GK+
Sbjct: 259 CGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKL 318

Query: 188 QPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
           +  E + NG++++ +AF     G NIGK+ V I+ E
Sbjct: 319 KIKETVINGLENMGAAFQSMMTGGNIGKQIVCISEE 354

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  197 bits (504), Expect = 2e-62
 Identities = 64/223 (28%), Positives = 103/223 (46%), Gaps = 19/223 (8%)

Query: 16  ANGAGTSGFTAYVGFYEIS--QKGEKVFVSGA---YGHLVGQYAKLGGCYVVGSAGTNEK 70
                 SG TAY+   E+    +G+KV V+ A    G    Q +K   C+V+G+  ++EK
Sbjct: 141 YLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEK 200

Query: 71  VAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVA 130
            A LK  LG D   NYK E  +   LK+ +P+G+DV +++VGG M + AV  +   GR+ 
Sbjct: 201 SAFLKS-LGCDRPINYKTE-PVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLI 258

Query: 131 ACGVIS----ECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGK 186
             G IS        +  +A      ++ K   +QGF    +   +Q  +S   +   +G 
Sbjct: 259 VIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGD 318

Query: 187 IQPLEDISN--------GVDSIPSAFTGFFRGDNIGKKFVRIA 221
           +    D+ +        G++SI  A    + G N GK  V + 
Sbjct: 319 LVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELP 361

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 84.6 bits (210), Expect = 1e-19
 Identities = 42/209 (20%), Positives = 76/209 (36%), Gaps = 22/209 (10%)

Query: 21  TSGFTAYVGFYEIS--QKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAIL 74
            +  TA+    +    + G+ V V  A    V     Q AKL G  V+ +AG+ +K+   
Sbjct: 149 LTFLTAWQMVVDKLGVRPGDDVLVMAAGSG-VSVAAIQIAKLFGARVIATAGSEDKLRRA 207

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACG 133
           K  LG D+  NY    D    ++R     G D   D+ G    E  +      GR+A  G
Sbjct: 208 KA-LGADETVNYTHP-DWPKEVRRLTGGKGADKVVDHTGALYFEGVIKATANGGRIAIAG 265

Query: 134 VISECADASKRAVPNMIDIVYKRIKIQG-FLSTDHFDLHQDFISMTCDALRAGKIQPLED 192
             S               + Y+++ I G  +++           +    +  GK++P+  
Sbjct: 266 ASS-----GYEGTLPFAHVFYRQLSILGSTMAS-----KSRLFPIL-RFVEEGKLKPVVG 314

Query: 193 ISNGVDSIPSAFTGFFRGDNIGKKFVRIA 221
               +++              GK  +++ 
Sbjct: 315 QVLPLEAAAEGHRLLEERRVFGKVVLQVG 343

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 83.5 bits (207), Expect = 3e-19
 Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 19/179 (10%)

Query: 23  GFTAY--VGFYEISQKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKE 76
             TA       +  +  +   ++      +       AK  G   + +   +E++A+LK+
Sbjct: 150 PLTAIAMFDIVKQ-EGEKAFVMTAGASQ-LCKLIIGLAKEEGFRPIVTVRRDEQIALLKD 207

Query: 77  KLGFDDAFNYKEETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVI 135
            +G     N K   D +ATL+         ++ D V G +  A    M    R    G +
Sbjct: 208 -IGAAHVLNEKAP-DFEATLREVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRL 265

Query: 136 SECADASKRAVPNMIDIVYKRIKIQGFL----STDHFDLHQDFISMTCDALRAGKIQPL 190
                     +     ++++   I+GF          +     I         G+    
Sbjct: 266 D----PDATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWSTD 320

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 83.0 bits (206), Expect = 4e-19
 Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 24/206 (11%)

Query: 24  FTAYVGFYEIS--QKGEKVFV-SGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKE 76
           FT +   ++++   +GE V +  G  G  +G    Q A+  G  V  +AG+  K    + 
Sbjct: 153 FTVWANLFQMAGLTEGESVLIHGGTSG--IGTTAIQLARAFGAEVYATAGSTGKCEACER 210

Query: 77  KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
            LG     NY+ E D  A +K     G+D+  D +G    E  +A++   G ++    + 
Sbjct: 211 -LGAKRGINYRSE-DFAAVIKAETGQGVDIILDMIGAAYFERNIASLAKDGCLSIIAFLG 268

Query: 137 ECADASKRAVPNMIDIVYKRIKIQGFLST-------DHFDLHQDFISMTCDALRAGKIQP 189
                +     N+  I+ KR+ + G  ST       +   +  D +S     L AG + P
Sbjct: 269 ----GAVAEKVNLSPIMVKRLTVTG--STMRPRTAEEKRAIRDDLLSEVWPLLEAGTVAP 322

Query: 190 LEDISNGVDSIPSAFTGFFRGDNIGK 215
           +       + +  A      G ++GK
Sbjct: 323 VIHKVFAFEDVADAHRLLEEGSHVGK 348

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 82.7 bits (205), Expect = 8e-19
 Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 24/201 (11%)

Query: 23  GFTAYVGFYEIS--QKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKE 76
           G TA+    E    + G++V V G  G  V     Q AK  G  V+ ++ + EK+     
Sbjct: 174 GLTAWFALVEKGHLRAGDRVVVQGTGG--VALFGLQIAKATGAEVIVTSSSREKLDRAFA 231

Query: 77  KLGFDDAFNYKEETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVI 135
            LG D   N  EE D    +     D G D   +  GG  L  ++  +   GR++  GV+
Sbjct: 232 -LGADHGINRLEE-DWVERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVL 289

Query: 136 SECADASKRAVPNMIDIVYKRIKIQG-FLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
                        +  ++ K   +QG  +        +    +   A+    ++P+ D+ 
Sbjct: 290 E-----GFEVSGPVGPLLLKSPVVQGISVGH-----RRALEDL-VGAVDRLGLKPVIDMR 338

Query: 195 NGVDSIPSAFTGFFRGDNIGK 215
                +P A     RG   GK
Sbjct: 339 YKFTEVPEALAHLDRG-PFGK 358

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 80.6 bits (199), Expect = 6e-18
 Identities = 40/225 (17%), Positives = 72/225 (32%), Gaps = 37/225 (16%)

Query: 21  TSGFTAYVGFYEIS----QKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNEKVA 72
               TAY      +    ++G+ V + GA G  +G    Q+A  GG   +    + +K  
Sbjct: 209 LVNSTAYRQLVSRNGAGMKQGDNVLIWGASGG-LGSYATQFALAGGANPICVVSSPQKAE 267

Query: 73  ILKEKLGFDDAFNYKEE-----TDLKATLKRYFPD------------GIDVYFDNVGGEM 115
           I +  +G +   +   E      D      + +               ID+ F++ G E 
Sbjct: 268 ICRA-MGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRET 326

Query: 116 LEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFI 175
             A+V      G +  C   S           +   +     +I G     HF  +++  
Sbjct: 327 FGASVFVTRKGGTITTCASTS-----GYMHEYDNRYLWMSLKRIIGS----HFANYREAW 377

Query: 176 SMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI 220
                 +  G+I P       ++    A     R  + GK  V  
Sbjct: 378 EAN-RLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVGVLC 421

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 77.7 bits (192), Expect = 4e-17
 Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 14/146 (9%)

Query: 24  FTAYVGFYEIS--QKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKEK 77
            TA+   + +   Q G+ V +       VG    Q  ++ G   + +AG+ +K+ + ++ 
Sbjct: 148 LTAFQLLHLVGNVQAGDYVLIHAGLSG-VGTAAIQLTRMAGAIPLVTAGSQKKLQMAEK- 205

Query: 78  LGFDDAFNYKEETDLKATLKRYF-PDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
           LG    FNYK+E D      ++    G+++  D +GG   E  V  + L GR    G++ 
Sbjct: 206 LGAAAGFNYKKE-DFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMG 264

Query: 137 ECADASKRAVPNMIDIVYKRIKIQGF 162
                     P    +++KR  +   
Sbjct: 265 ----GGDINGPLFSKLLFKRGSLITS 286

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 77.2 bits (190), Expect = 9e-17
 Identities = 41/220 (18%), Positives = 64/220 (29%), Gaps = 37/220 (16%)

Query: 21  TSGFTAYVGFYEIS----QKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNEKVA 72
               TAY           ++G+ V + GA G  +G    Q+ K GG   V    + +K A
Sbjct: 201 LCAGTAYRMLVSDRGAQMKQGDIVLIWGASGG-LGSYAIQFVKNGGGIPVAVVSSAQKEA 259

Query: 73  ILKEKLGFDDAFNYKEETDLKATLKRYFP-----------------DGIDVYFDNVGGEM 115
            ++  LG D   N  E                                 D+ F++ G   
Sbjct: 260 AVRA-LGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVT 318

Query: 116 LEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFI 175
              +V      G V  CG  S           +   +  K  KI G     H   H++  
Sbjct: 319 FGLSVIVARRGGTVVTCGSSS-----GYLHTFDNRYLWMKLKKIVGS----HGANHEEQQ 369

Query: 176 SMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGK 215
           +       +G + P       +     A         +GK
Sbjct: 370 ATN-RLFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVGK 408

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 74.9 bits (185), Expect = 4e-16
 Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 19/180 (10%)

Query: 23  GFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK 77
             TA+V   E    Q+ + + V     A GHL  Q +++    ++     N+    L   
Sbjct: 129 PLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR- 187

Query: 78  LGFDDAFNYKEETDLKATLKRY-FPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
           LG     +      L  T+       G D   D++GG        ++   G     G+  
Sbjct: 188 LGAAYVIDTSTA-PLYETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGL-- 244

Query: 137 ECADASKRAVPNMIDIVYKRIKIQGFLSTDHF-----DLHQDFISMTCDALRAGKIQPLE 191
                S   V     +   ++    F              Q+        +   +++ ++
Sbjct: 245 ----LSGIQVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK 300

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 74.1 bits (183), Expect = 6e-16
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 23  GFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK 77
            FTAY      +  + GE V V   SG  G    Q A+  G  ++G+AGT E   I+ + 
Sbjct: 155 YFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ- 213

Query: 78  LGFDDAFNYKEETDLKATLKRY-FPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
            G  + FN++E  +    +K+Y    GID+  + +    L   ++ ++  GRV   G   
Sbjct: 214 NGAHEVFNHREV-NYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVG--- 269

Query: 137 ECADASKRAVPNMIDIVYKRIKIQG-FLSTDHFDLHQDFISMTCDALRAGKIQPL 190
               +      N  D + K   I G  L +   +  Q + +     +  G ++P+
Sbjct: 270 ----SRGTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPV 320

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 70.9 bits (174), Expect = 1e-14
 Identities = 39/215 (18%), Positives = 67/215 (31%), Gaps = 30/215 (13%)

Query: 24  FTAYVGFYEIS--QKGEKVFV----SGAYGHLVGQYAKLGGCYVVG----SAGTNEKVAI 73
            TAY+          G+  F+    + A G    Q  KL     +         +E VA 
Sbjct: 152 LTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVAS 211

Query: 74  LKEKLGFDDAFNYKEE--TDLKATLKRYFPD---GIDVYFDNVGGEMLEAAVANMNLFGR 128
           LKE LG        +    +   T+K +         +  + VGG+        +N  G 
Sbjct: 212 LKE-LGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGL 270

Query: 129 VAACGVISECADASKRAVP-NMIDIVYKRIKIQGF----LSTDHFDLHQDFISMTCDALR 183
           +   G        S + V       ++K     GF    L  ++ +L    ++       
Sbjct: 271 MLTYGG------MSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYE 324

Query: 184 AGKIQPLEDIS---NGVDSIPSAFTGFFRGDNIGK 215
            GK+   + I    +G   +   +         GK
Sbjct: 325 EGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGK 359

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 35/229 (15%), Positives = 66/229 (28%), Gaps = 35/229 (15%)

Query: 20  GTSGFTAYVGFYEI--------------SQKGEKVFV---SGAYGHLVGQYAKLGGCYVV 62
                TA +    +                K   V V   S A   +  Q  +L G   +
Sbjct: 134 PAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPI 193

Query: 63  GSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG----EMLEA 118
            +        + K   G ++ F+Y+   +L  T++ Y  + +    D +          A
Sbjct: 194 ATCSP-HNFDLAK-SRGAEEVFDYRAP-NLAQTIRTYTKNNLRYALDCITNVESTTFCFA 250

Query: 119 AVANMNLFGRVAACGVISECADASKRAVPNMI---DIVYKRIKIQGFLST----DHFDLH 171
           A+      G   +     E A   K    +      I  +              +     
Sbjct: 251 AIGRAG--GHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFG 308

Query: 172 QDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFV 218
           +D   +    +  G++    L  +  G D I        +G+  G+K V
Sbjct: 309 EDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLV 357

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 36/190 (18%), Positives = 63/190 (33%), Gaps = 28/190 (14%)

Query: 24  FTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL 78
            TAYV  +E++  ++G  V V    G  G  V Q         V    +  K   +K+  
Sbjct: 128 VTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKD-S 186

Query: 79  GFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRV----AACGV 134
                   +   D    +KR   +G+D+  D + G+     ++ +   G      ++  V
Sbjct: 187 V--THLFDRNA-DYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMV 243

Query: 135 ISECADASKRAVP-------NMIDIVYKRIKIQGFLSTDHF-------DLHQDFISMTCD 180
             E       A         N I +  +   I GF S  +         L +  +     
Sbjct: 244 TGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGF-SLLNLLFKQGRAGLIRGVVEKLIG 302

Query: 181 ALRAGKIQPL 190
                KI+P+
Sbjct: 303 LYNQKKIKPV 312

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 37/183 (20%), Positives = 69/183 (37%), Gaps = 24/183 (13%)

Query: 23  GFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK 77
             TA+ G  + +  Q G+ V +    G  GH+  Q A   G  V  +A     +  +++ 
Sbjct: 135 FITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATARG-SDLEYVRD- 192

Query: 78  LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISE 137
           LG       +E  D  A        G D+ +D +GG +L+A+ + +  FG V +C     
Sbjct: 193 LGATPIDASREPEDYAAEHTA--GQGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGWGT 250

Query: 138 CADASKRAVPNMIDIVYKRIKIQG------FLSTDHFDLHQDFISMTCDALRAGKIQPLE 191
                      +  + +K+    G       L+ +      + +      ++ GK+ P  
Sbjct: 251 ---------HKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLAPRL 301

Query: 192 DIS 194
           D  
Sbjct: 302 DPR 304

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 69.2 bits (170), Expect = 4e-14
 Identities = 40/189 (21%), Positives = 77/189 (40%), Gaps = 27/189 (14%)

Query: 23  GFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK 77
             TA     E    +KG+ V +   +G  G ++ Q  K+ G + +  A T+EK+ I KE 
Sbjct: 133 VLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE- 191

Query: 78  LGFDDAFNYKEETDLKATLKRYF-PDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
            G +   N  +E D+   + ++    G+D  FD+VG +  E ++A +   G   + G  S
Sbjct: 192 YGAEYLINASKE-DILRQVLKFTNGKGVDASFDSVGKDTFEISLAALKRKGVFVSFGNAS 250

Query: 137 ECADASKRAVP--NMIDIVYKRIKIQGFLSTDHFDLHQDFISMTC---DALRAGKIQ--- 188
                    +P  ++  +  K I +       +    +++   +      + + K+    
Sbjct: 251 -------GLIPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIKI 303

Query: 189 ----PLEDI 193
               PL D 
Sbjct: 304 YKTYPLRDY 312

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 68.4 bits (168), Expect = 8e-14
 Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 13/123 (10%)

Query: 15  FANGAG--TSGFTAYVGFYEIS--QKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAG 66
            A       +  T Y  +      + GE V V GA G  +G    Q AK  G  V+    
Sbjct: 134 DAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGG-IGTAAIQIAKGMGAKVIAVVN 192

Query: 67  TNEKVAILKEKLGFDDAFNYKEETDLKATLKRYF-PDGIDVYFDNVGGEMLEAAVANMNL 125
                  +K  +G D     +E       ++      G+D+  D +GG   + AV  +  
Sbjct: 193 RTAATEFVKS-VGADIVLPLEE--GWAKAVREATGGAGVDMVVDPIGGPAFDDAVRTLAS 249

Query: 126 FGR 128
            GR
Sbjct: 250 EGR 252

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 35/208 (16%), Positives = 67/208 (32%), Gaps = 22/208 (10%)

Query: 23  GFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE- 76
             TAY    +    Q G+ V     +   G  V Q A   G   +        +  L + 
Sbjct: 152 PCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDR 211

Query: 77  --KLGFDDAFNYKEETDLKATLKRY-FPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACG 133
              LG +     +E          +       +  + VGG+     +  +   G +   G
Sbjct: 212 LKSLGAEHVITEEEL-RRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYG 270

Query: 134 VISECADASKRAVP-NMIDIVYKRIKIQGF-----LSTDHFDLHQDFISMTCDALRAGKI 187
                   +K+ V  ++  +++K +K++GF           D  ++ I   CD +R G++
Sbjct: 271 G------MAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQL 324

Query: 188 QPLEDISNGVDSIPSAFTGFFRGDNIGK 215
                    +    SA     +     K
Sbjct: 325 TAPACSQVPLQDYQSALEASMKPFISSK 352

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 66.9 bits (164), Expect = 3e-13
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 8/120 (6%)

Query: 23  GFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK 77
           G TA    ++    + G+ V +   +G  GH++  +A+  G  V+G+  T EK    ++ 
Sbjct: 130 GMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK- 188

Query: 78  LGFDDAFNYKEETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
           LG     NY  + D    ++      G+DV +D++G + L+ ++  +   G  AA G  S
Sbjct: 189 LGCHHTINYSTQ-DFAEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHAS 247

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 22  SGFTAYVGFYEIS-QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK 77
           +G TA     +   ++G+ V +   +G  GHL  Q AK  G  V+ +A      A LK  
Sbjct: 137 AGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK-RNHAFLKA- 194

Query: 78  LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVA 130
           LG +   NY EE D    +       +D   D VGG++   ++  +   G + 
Sbjct: 195 LGAEQCINYHEE-DFLLAI----STPVDAVIDLVGGDVGIQSIDCLKETGCIV 242

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 23  GFTAYV---GFYEISQKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE 76
           G T        Y++ + GE +     +G  G L  Q+AK  G  ++G+  + EK A  K 
Sbjct: 125 GLTVQYLLRQTYQV-KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA 183

Query: 77  KLGFDDAFNYKEETDLKATLKRYFP-DGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVI 135
            LG  +  +Y  E D+   +          V +D VG +    ++ ++   G V + G  
Sbjct: 184 -LGAWETIDYSHE-DVAKRVLELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNA 241

Query: 136 S 136
           S
Sbjct: 242 S 242

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 24/211 (11%)

Query: 15  FANGAG--TSGFTAYVGFYEIS-QKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGT 67
               A    S  TAY+       + GEKV V  A G  +G    Q A+  G  V+ +A  
Sbjct: 101 PEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGA-LGTAAVQVARAMGLRVLAAASR 159

Query: 68  NEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFG 127
            EK+A+    LG ++A  Y E    +A        G+D+  + V G+ +E ++  +   G
Sbjct: 160 PEKLALPLA-LGAEEAATYAEV-PERAKAWG----GLDLVLE-VRGKEVEESLGLLAHGG 212

Query: 128 RVAACGVISECADASKRAVPNMIDIVYKRIKIQGFL---STDHFDLHQDFISMTCDALRA 184
           R+   G         + A    + ++ + + + GF          L ++ +         
Sbjct: 213 RLVYIGAAE-----GEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALG-FLLPRLG 266

Query: 185 GKIQPLEDISNGVDSIPSAFTGFFRGDNIGK 215
            +++P+           +AF       + GK
Sbjct: 267 RELRPVVGPVFPFAEAEAAFRALLDRGHTGK 297

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 63.4 bits (155), Expect = 4e-12
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 23  GFTAYVGFYEI--SQKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK 77
           G T Y    +    +  E+      +G  G +  Q+AK  G  ++G+ GT +K     + 
Sbjct: 125 GLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK- 183

Query: 78  LGFDDAFNYKEETDLKATLKRYFP-DGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
            G     NY+EE DL   LK       + V +D+VG +  E ++  +   G + + G  S
Sbjct: 184 AGAWQVINYREE-DLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSS 242

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 62.6 bits (153), Expect = 7e-12
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 15/122 (12%)

Query: 23  GFTAY--------VGFYEISQKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKV 71
           G TAY        +       +G+ + +   +G  G +  Q AK  G  V+ +A  NE +
Sbjct: 129 GITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETI 188

Query: 72  AILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEM-LEAAVANMNLFGRVA 130
              K+ +G D   N+KE   L    K    + +D  F     +M  +  +  +   G +A
Sbjct: 189 EWTKK-MGADIVLNHKE--SLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIA 245

Query: 131 AC 132
             
Sbjct: 246 TI 247

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 59.9 bits (146), Expect = 5e-11
 Identities = 40/202 (19%), Positives = 62/202 (30%), Gaps = 22/202 (10%)

Query: 22  SGFTAYVGFYEISQK-GEKVFVSGAYG---HLVGQYAK-LGGCYVVGSAGTNEKVAILKE 76
           SG T Y    + S    + + V GA G    +  Q AK + G  ++G     E V   K 
Sbjct: 155 SGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR 214

Query: 77  KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEM-LEAAVANMNLFGRVAACGVI 135
             G D   N   +  L    +     G+D   D    E  L      +   G+    G+ 
Sbjct: 215 -AGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLF 273

Query: 136 SECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQ--DFISMTCDALRAGKIQPLEDI 193
                           I    I+  G L  +  D                AGK++P+   
Sbjct: 274 GADLHYH------APLITLSEIQFVGSLVGNQSDFLGIMRLA-------EAGKVKPMITK 320

Query: 194 SNGVDSIPSAFTGFFRGDNIGK 215
           +  ++    A         IG+
Sbjct: 321 TMKLEEANEAIDNLENFKAIGR 342

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 60.1 bits (146), Expect = 6e-11
 Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 23/189 (12%)

Query: 22  SGFTAYVGFYEI------SQKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVA 72
              TA+    ++      +  G++V +   SG  G    Q  K    +V       +   
Sbjct: 163 VALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQ-DASE 221

Query: 73  ILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAAC 132
           ++++ LG DD  +YK    ++  LK       D   DNVGG     A   +  +      
Sbjct: 222 LVRK-LGADDVIDYKSG-SVEEQLKS--LKPFDFILDNVGGSTETWAPDFLKKWSGATYV 277

Query: 133 GVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDA---------LR 183
            +++       R       +          L      +H  +                + 
Sbjct: 278 TLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVD 337

Query: 184 AGKIQPLED 192
           AGKI+P+ +
Sbjct: 338 AGKIRPVIE 346

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 15/122 (12%)

Query: 23  GFTAYVGFYE-------ISQKGEKVFV---SGAYGHLVGQYAK-LGGCYVVGSAGTNEKV 71
             TA+  F++       +      + +   +G  G +  Q A+      V+ +A   E  
Sbjct: 151 SITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQ 210

Query: 72  AILKEKLGFDDAFNYKEETDLKATLKRYFPDGID-VYFDNVGGEMLEAAVANMNLFGRVA 130
             +K  LG     ++ +   L A +          V+      +        +   GR  
Sbjct: 211 EWVKS-LGAHHVIDHSK--PLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFC 267

Query: 131 AC 132
             
Sbjct: 268 LI 269

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 25/158 (15%), Positives = 45/158 (28%), Gaps = 17/158 (10%)

Query: 23  GFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK 77
             TA  G  E    +    +     +   G ++ Q     G  +V      E+  +LK  
Sbjct: 157 PLTAL-GMVETMRLEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKA- 214

Query: 78  LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISE 137
            G     N    T ++   +     G  + FD  GG  L   +          +    S 
Sbjct: 215 QGAVHVCNAASPTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSR 274

Query: 138 CADASKRAV---------PNMIDIVYKRIK-IQGFLST 165
               + + V         P   +  +     + G+L  
Sbjct: 275 YGSTTHKQVYLYGGLDTSPTEFNRNFGMAWGMGGWLLF 312

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 56.5 bits (137), Expect = 9e-10
 Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 15/111 (13%)

Query: 23  GFTAYVGFYEIS-QKGEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG 79
             TA+  F +I   K  +V + G     +L+ Q     G  V   + +    A+  +  G
Sbjct: 128 LLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVSAS-LSQALAAK-RG 185

Query: 80  FDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVA 130
               +    +                  FD V  +   A V ++   G + 
Sbjct: 186 VRHLYREPSQV----------TQKYFAIFDAVNSQNAAALVPSLKANGHII 226

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 12/188 (6%)

Query: 35  QKGEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL 92
            + + V + GA   G L  Q A   G   V +   + +   L +  G    FN  E    
Sbjct: 159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEM-SA 217

Query: 93  KATLKRYF-PDGIDVYFDNVGGEM-LEAAVANMNLFGRVAACGVISECADASKRAVPNMI 150
                         +  +  G    +E AV       ++A  G                 
Sbjct: 218 PQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGT---LHQDLHLTSATFG 274

Query: 151 DIVYKRIKIQG-FLSTDHFDLHQDFISMTCDALRAGKIQPLEDISN--GVDSIPSAFTGF 207
            I+ K + + G +++       Q++ + +   L   K+     I++    +S   A    
Sbjct: 275 KILRKELTVIGSWMNYSSPWPGQEWETAS-RLLTERKLSLEPLIAHRGSFESFAQAVRDI 333

Query: 208 FRGDNIGK 215
            R    GK
Sbjct: 334 ARNAMPGK 341

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 17/185 (9%)

Query: 36  KGEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLK 93
            G+ V ++GA   G L    AK  G Y V  +  ++    L +K+G D   N  EE D+ 
Sbjct: 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEE-DVV 225

Query: 94  ATLKRYF-PDGIDVYFDNVGGEM-LEAAVANMNLFGRVAACGVISECADASKRAVPNMID 151
             +      +G+DV+ +  G    LE  +  +   GRV+  G+        K  +     
Sbjct: 226 KEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPG-----KVTIDFNNL 280

Query: 152 IVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISN---GVDSIPSAFTGFF 208
           I++K + I G      ++       +    L++GK+     I++   G D    AF    
Sbjct: 281 IIFKALTIYGITGRHLWETWYTVSRL----LQSGKLNLDPIITHKYKGFDKYEEAFELMR 336

Query: 209 RGDNI 213
            G   
Sbjct: 337 AGKTG 341

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 41/195 (21%), Positives = 73/195 (37%), Gaps = 23/195 (11%)

Query: 25   TAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK-L 78
            TAY         Q GE V +   SG  G      A   GC V  + G+ EK A L+ +  
Sbjct: 1654 TAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFP 1713

Query: 79   GFDDA---------FNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRV 129
              D+          F   E+  L+ T  +    G+D+  +++  E L+A+V  +   GR 
Sbjct: 1714 QLDETCFANSRDTSF---EQHVLRHTAGK----GVDLVLNSLAEEKLQASVRCLAQHGRF 1766

Query: 130  AACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQP 189
               G      + +      + ++ +  I +            Q+   +    ++ G +QP
Sbjct: 1767 LEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLFEEGG-ATWQEVSELLKAGIQEGVVQP 1825

Query: 190  LEDISNGVDSIPSAF 204
            L+        + +AF
Sbjct: 1826 LKCTVFPRTKVEAAF 1840

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 18/116 (15%)

Query: 24  FTAYVGFYEIS--QKGEKVFV-SGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKE 76
            TA+    E+     GE+V + S   G  VG      AK+ G  +  +AG++ K  +L  
Sbjct: 24  LTAWHSLCEVGRLSPGERVLIHSATGG--VGMAAVSIAKMIGARIYTTAGSDAKREMLSR 81

Query: 77  KLGFDDAFNYK----EETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGR 128
            LG +   + +     +  L+ T       G+DV  +++ GE ++  V  +   GR
Sbjct: 82  -LGVEYVGDSRSVDFADEILELTDGY----GVDVVLNSLAGEAIQRGVQILAPGGR 132

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 40/209 (19%), Positives = 76/209 (36%), Gaps = 40/209 (19%)

Query: 25  TAYVGFYEIS--QKGEKVFVSGAYGHLVG----QYAKLGGCYVVGSAGTNEKVAILKEKL 78
           TAY    +++  + GE + V  A G  VG    Q A+  G  V  +A  ++      + +
Sbjct: 332 TAYYALVDLAGLRPGESLLVHSAAGG-VGMAAIQLARHLGAEVYATASEDKW-----QAV 385

Query: 79  GFDDA---------FNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRV 129
                         F   E+  L AT  R    G+DV  +++ GE  +A++  +   GR 
Sbjct: 386 ELSREHLASSRTCDF---EQQFLGATGGR----GVDVVLNSLAGEFADASLRMLPRGGRF 438

Query: 130 AACGVISECADASKRAVPNMIDI--VYKRIKIQGF-LSTDHFDLHQDFISMTCDALRAGK 186
                     +  K  V + +++   +  +  Q F           + +    +      
Sbjct: 439 ---------LELGKTDVRDPVEVADAHPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRV 489

Query: 187 IQPLEDISNGVDSIPSAFTGFFRGDNIGK 215
           ++PL   +  V   P A     +  ++GK
Sbjct: 490 LEPLPVTAWDVRQAPEALRHLSQARHVGK 518

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 35/190 (18%), Positives = 77/190 (40%), Gaps = 27/190 (14%)

Query: 22  SGFTAYVGFYEISQK---GEKVFVSGA--YGHLVGQYAK-LGGCYVVGSAGTNEKVAILK 75
           +G TAY    + ++    G  V + G    GH+  Q  K +    V+      EK+ + +
Sbjct: 169 AGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE 228

Query: 76  EKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-GEMLEAAVANMNLFGRVAACGV 134
             LG D   + + +  +K  ++     G++V  D VG    ++     +   GR+   G 
Sbjct: 229 R-LGADHVVDARRD-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGY 286

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQ------ 188
             E            I ++   +  +G L  ++ +L  + +++       GK++      
Sbjct: 287 GGELR-------FPTIRVISSEVSFEGSLVGNYVEL-HELVTLA----LQGKVRVEVDIH 334

Query: 189 PLEDISNGVD 198
            L++I++ ++
Sbjct: 335 KLDEINDVLE 344

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 19/126 (15%)

Query: 20  GTSGFTAYVGFYEISQKG-----EKVFVSGAYGHLVGQYA-----KLGGCYVVGSAGTNE 69
           GT+GFTA +  + + Q G       V V+GA G  VG  A     K G   VV S G  E
Sbjct: 129 GTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGG-VGGIAVSMLNKRG-YDVVASTGNRE 186

Query: 70  KVAILKEKLGFDDAFNYKE--ETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFG 127
               LK+ LG  +  + ++  +  LKA  K+ +   +D     VGG+ L + ++ +   G
Sbjct: 187 AADYLKQ-LGASEVISREDVYDGTLKALSKQQWQGAVD----PVGGKQLASLLSKIQYGG 241

Query: 128 RVAACG 133
            VA  G
Sbjct: 242 SVAVSG 247

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 27/174 (15%), Positives = 54/174 (31%), Gaps = 23/174 (13%)

Query: 37  GEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKA 94
           G+ V ++GA   G +     +  G   +  +  N            D   N  EE DL  
Sbjct: 165 GKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYA-DRLVNPLEE-DLLE 222

Query: 95  TLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIV 153
            ++R    G++V  +  G E  +   +  +   G     G+ S+             ++V
Sbjct: 223 VVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSD-----PIRFDLAGELV 277

Query: 154 YKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQ---------PLEDISNGVD 198
            + I   G      +       ++    + +G++          PL        
Sbjct: 278 MRGITAFGIAGRRLWQTWMQGTAL----VYSGRVDLSPLLTHRLPLSRYREAFG 327

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 15/196 (7%)

Query: 35  QKGEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL 92
           + G+ V + G    G       K  G   V  +  +E    L ++LG D   +  +E + 
Sbjct: 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKE-NF 270

Query: 93  KATLKRYF-PDGIDVYFDNVGGEM-LEAAVANMNLFGRVAACGVISECADASKRAVPNMI 150
              +  Y    G  ++ +  G    +   +  +    R      ++  A A  +      
Sbjct: 271 VEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRAR-GINATVAIVARADAKIPLTGE 329

Query: 151 DIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAG-KIQPLEDISN--GVDSIPSAFTGF 207
               +R +I G             IS+    + +G  +  +  IS    ++ IP      
Sbjct: 330 VFQVRRAQIVGSQGHSGHGTFPRVISL----MASGMDMTKI--ISKTVSMEEIPEYIKRL 383

Query: 208 FRGDNIGKKFVRIAGE 223
               ++ K  +   G 
Sbjct: 384 QTDKSLVKVTMLNEGH 399

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 10/131 (7%)

Query: 35  QKGEKVFVSGAY---GHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETD 91
             G  V +SGA    G L  QYAK  G  V+G  G   K  + +  +G +   ++ +E D
Sbjct: 168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS-IGGEVFIDFTKEKD 226

Query: 92  LKATLKRYFPDGIDVYFDNVGGEM-LEAAVANMNLFGRVAACGVISECADASKRAVPNMI 150
           +   + +    G     +    E  +EA+   +   G     G+ +       +   ++ 
Sbjct: 227 IVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAG-----AKCCSDVF 281

Query: 151 DIVYKRIKIQG 161
           + V K I I G
Sbjct: 282 NQVVKSISIVG 292

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 27/192 (14%), Positives = 54/192 (28%), Gaps = 20/192 (10%)

Query: 37  GEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKA 94
             KV V G    G L     +  G  V  +         +++ +  +   NY   ++   
Sbjct: 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTE--VEQTVIEETKTNYYNSSNGYD 238

Query: 95  TLKRYFPDGIDVYFDNVGGE--MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDI 152
            LK       DV  D  G +  +L   +  +   G +   G  +    +       + +I
Sbjct: 239 KLKDS-VGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTS--GSVPLDYKTLQEI 295

Query: 153 VYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGV------DSIPSAFTG 206
           V+    I G ++       Q         L + K    +     +      +        
Sbjct: 296 VHTNKTIIGLVNGQKPHFQQ-----AVVHLASWKTLYPKAAKMLITKTVSINDEKELLKV 350

Query: 207 FFRGDNIGKKFV 218
               ++   K  
Sbjct: 351 LREKEHGEIKIR 362

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 17/125 (13%)

Query: 20  GTSGFTAYVGFYEISQKG-----EKVFVSGAYGHLVGQYA----KLGGCYVVGSAGTNEK 70
           GT+GFTA +  + + + G       V V+GA G  VG  A       G  V  S G   +
Sbjct: 128 GTAGFTAALSIHRLEEHGLTPERGPVLVTGATGG-VGSLAVSMLAKRGYTVEASTGKAAE 186

Query: 71  VAILKEKLGFDDAFNYKE--ETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGR 128
              L+  LG  +    ++     ++   K+ +   +D     VGG  L   ++ M   G 
Sbjct: 187 HDYLRV-LGAKEVLAREDVMAERIRPLDKQRWAAAVD----PVGGRTLATVLSRMRYGGA 241

Query: 129 VAACG 133
           VA  G
Sbjct: 242 VAVSG 246

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 15/124 (12%)

Query: 19  AGTSGFTAYVGFYEISQKG-----EKVFVSGAYGHLVGQYA----KLGGCYVVGSAGTNE 69
            GT+GFTA +    +   G      +V V+GA G  VG  A       G  V   +G   
Sbjct: 124 IGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGG-VGSTAVALLHKLGYQVAAVSGRES 182

Query: 70  KVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRV 129
               LK  LG +   +  E  + +   K+ +   ID     VG ++L   +A MN  G V
Sbjct: 183 THGYLKS-LGANRILSRDEFAESRPLEKQLWAGAID----TVGDKVLAKVLAQMNYGGCV 237

Query: 130 AACG 133
           AACG
Sbjct: 238 AACG 241

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 29/185 (15%), Positives = 58/185 (31%), Gaps = 26/185 (14%)

Query: 22  SGFTAYVGFYEISQK---GEKVFVSGA--YGHLVGQYAKLGGCY-VVGSAGTNEKVAILK 75
           +G T Y     +      G    V G    GH+  Q  +      V+     ++++A+ +
Sbjct: 154 AGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAR 213

Query: 76  EKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-GEMLEAAVANMNLFGRVAACGV 134
           E +G D A          A  +     G    FD VG    ++ A   + + G ++  G+
Sbjct: 214 E-VGADAAVKSGAGA-ADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGI 271

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQ------ 188
                  +         ++     +         +L            RAG++       
Sbjct: 272 ------HAGAHAKVGFFMIPFGASVVTPYWGTRSELM-----EVVALARAGRLDIHTETF 320

Query: 189 PLEDI 193
            L++ 
Sbjct: 321 TLDEG 325

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	223
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.98
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	99.98
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.98
4eye_A	342	Probable oxidoreductase; structural genomics, niai	99.98
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	99.98
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.98
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.98
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	99.97
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	99.97
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.97
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	99.97
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.97
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.97
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.97
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.97
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	99.97
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.97
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	99.97
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.97
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	99.97
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.97
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	99.97
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.97
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.97
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.97
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.97
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.97
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.97
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	99.97
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.97
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	99.97
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.97
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.97
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.97
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.97
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.97
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.97
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	99.97
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	99.97
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.97
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.97
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.97
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.97
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.97
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.97
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.97
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.97
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	99.97
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.97
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.96
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.96
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	99.96
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.96
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	99.96
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	99.96
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.96
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.96
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.96
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.96
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	99.96
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.96
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.96
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	99.95
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.95
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.94
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.94
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.94
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.9
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.04
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.89
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.89
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.71
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.62
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.51
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.37
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.27
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.21
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.15
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.94
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.87
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.81
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.77
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.76
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.67
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.65
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.65
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.64
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.58
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.54
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.53
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.49
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.47
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.46
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.45
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.41
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.41
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.4
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.39
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.36
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.32
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.31
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.31
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.28
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.27
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.26
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.24
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.23
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.23
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.22
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.2
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.2
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.19
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.19
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.18
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.17
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.17
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.17
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.16
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.14
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.14
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.14
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.13
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.11
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.11
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.1
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.1
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.1
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.09
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.09
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.08
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.07
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.07
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.07
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.07
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.06
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.05
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.04
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.04
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.03
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.03
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.02
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.02
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.02
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.01
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.01
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.01
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.0
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.0
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.99
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.99
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.98
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.98
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.98
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.97
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.97
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.97
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.97
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.96
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.96
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.96
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.95
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.95
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.95
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.95
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.95
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.94
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.94
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.94
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.93
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.93
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.93
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.93
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.92
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.91
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.9
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.89
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.89
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.89
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.88
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.87
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.87
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.87
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.87
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.86
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.85
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.85
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.85
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.85
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.83
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.83
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.82
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.82
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.82
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	96.81
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.81
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.81
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.8
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.8
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.8
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.8
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.79
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.78
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.78
1spx_A	278	Short-chain reductase family member (5L265); paral	96.78
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.77
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.77
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.76
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.76
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.76
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.75
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.75
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.74
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.74
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.74
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.74
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.74
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.74
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.74
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	96.74
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.73
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.73
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.72
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.71
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.7
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	96.7
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.7
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	96.69
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.69
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	96.69
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.69
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.69
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	96.68
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.68
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	96.68
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.67
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.66
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.66
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.65
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.65
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.65
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.65
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.65
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.65
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.64
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.64
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.64
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.64
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.64
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.59
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.59
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	96.58
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.57
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.57
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.57
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.56
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.55
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.54
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	96.53
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.53
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.53
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.52
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.52
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.51
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.51
2o07_A	304	Spermidine synthase; structural genomics, structur	96.5
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.5
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.5
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.5
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.49
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.49
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.49
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.49
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.48
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.47
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.47
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.46
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.46
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.45
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.44
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.42
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.42
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.41
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.41
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.41
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.41
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.41
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.4
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.4
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.39
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.39
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.39
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.37
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.36
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.35
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.34
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.34
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	96.33
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.33
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.31
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.31
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.29
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.29
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.29
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	96.28
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.28
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.27
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.26
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.26
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.25
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.25
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.24
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.24
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.24
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.24
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.23
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.23
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.22
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.22
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.19
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	96.18
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	96.18
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.17
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.17
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.17
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.16
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.16
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.15
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.15
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.15
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.13
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	96.11
3k6r_A	278	Putative transferase PH0793; structural genomics,	96.1
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	96.1
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.09
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.08
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.08
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.07
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.07
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.07
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.06
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.05
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.05
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.04
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.04
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	96.04
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.03
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.03
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	96.03
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.03
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.03
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.03
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	96.03
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	96.02
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.02
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.01
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.01
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.01
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	95.98
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.98
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	95.98
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.97
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	95.97
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.96
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	95.94
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	95.94
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	95.94
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.93
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	95.93
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.92
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	95.92
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	95.92
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	95.92
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	95.91
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	95.91
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	95.9
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	95.9
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	95.89
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.89
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.88
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	95.87
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	95.87
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	95.85
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.85
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	95.85
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.84
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	95.81
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.8
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.8
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.79
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.79
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	95.79
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	95.78
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	95.78
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.77
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.77
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	95.76
3cvo_A	202	Methyltransferase-like protein of unknown functio;	95.75
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	95.75
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.75
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	95.73
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.72
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.72
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	95.72
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	95.72
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.7
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	95.7
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	95.7
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	95.69
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	95.69
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	95.69
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	95.69
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	95.68
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	95.67
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	95.67
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	95.65
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.65
3f4k_A	257	Putative methyltransferase; structural genomics, P	95.64
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	95.63
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	95.62
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	95.62
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	95.62
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	95.6
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	95.59
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	95.57
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	95.56
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.56
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.56
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	95.55
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.55
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	95.55
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	95.54
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.54
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	95.53
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	95.53
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.5
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	95.49
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.49
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.48
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	95.48
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	95.48
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	95.48
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.48
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	95.46
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	95.44
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	95.43
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	95.43
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	95.42
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	95.4
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	95.4
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.4
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.39
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.39
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.38
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.37
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	95.37
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	95.36
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.35
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	95.35
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	95.34
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.3
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	95.3
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.3
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.3
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.3
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.28
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.26
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	95.26
3i9f_A	170	Putative type 11 methyltransferase; structural gen	95.25
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	95.25
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.24
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	95.22
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	95.21
3lpm_A	259	Putative methyltransferase; structural genomics, p	95.19
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.19
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	95.19
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.19
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	95.15
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	95.14
2frn_A	278	Hypothetical protein PH0793; structural genomics,	95.12
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	95.11
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.1
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	95.09
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.08
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	95.08
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	95.02
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.01
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	95.01
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	95.0
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	94.97
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	94.97
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	94.96
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	94.96
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	94.95
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.93
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	94.9

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=3e-32  Score=216.99  Aligned_cols=195  Identities=23%  Similarity=0.302  Sum_probs=175.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++|++++++.|||+++.+..  ++|++|||+  |++|++++|+|+..|++|+++++++++++.++ ++|++.++|+..
T Consensus       164 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~  242 (363)
T 3uog_A          164 AAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAF-ALGADHGINRLE  242 (363)
T ss_dssp             HHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHTCSEEEETTT
T ss_pred             HHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHH-HcCCCEEEcCCc
Confidence            5689999999999999996655  999999999  99999999999999999999999999999999 999999999554


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      . ++.+.+++.+++ ++|++|||+|++.+..++++++++|+++.+|.....     ...++...++.+++++.|+.... 
T Consensus       243 ~-~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~-  315 (363)
T 3uog_A          243 E-DWVERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEGF-----EVSGPVGPLLLKSPVVQGISVGH-  315 (363)
T ss_dssp             S-CHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHEEEEEEEEEECCCSSC-----EECCBTTHHHHTCCEEEECCCCC-
T ss_pred             c-cHHHHHHHHhCCCCceEEEECCChHHHHHHHHHhhcCCEEEEEecCCCc-----ccCcCHHHHHhCCcEEEEEecCC-
Confidence            5 899999999988 999999999988899999999999999999976542     12456677888999999988766 


Q ss_pred             cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          168 FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                          .+.++++++++++|.+++.++.+++|+++++||+.+.+++ .||+|+++
T Consensus       316 ----~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~-~gKvvi~~  363 (363)
T 3uog_A          316 ----RRALEDLVGAVDRLGLKPVIDMRYKFTEVPEALAHLDRGP-FGKVVIEF  363 (363)
T ss_dssp             ----HHHHHHHHHHHHHHTCCCCEEEEEEGGGHHHHHHTGGGCC-SBEEEEEC
T ss_pred             ----HHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCC-CccEEEeC
Confidence                6789999999999999999999999999999999999998 89999975

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=1.7e-31  Score=210.68  Aligned_cols=202  Identities=38%  Similarity=0.715  Sum_probs=177.6

Q ss_pred             hccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHH-HHhhCCCeeeecCCcc
Q 043295           17 NGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL-KEKLGFDDAFNYKEET   90 (223)
Q Consensus        17 a~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~   90 (223)
                      |++++++.|||+++.+..  ++|++|||+   |++|++++|+++..|++|+++++++++.+.+ + ++|++.++|+.+. 
T Consensus       128 a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~~g~~~~~~~~~~-  205 (336)
T 4b7c_A          128 SALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVE-ELGFDGAIDYKNE-  205 (336)
T ss_dssp             TTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCCSEEEETTTS-
T ss_pred             hhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HcCCCEEEECCCH-
Confidence            889999999999996665  999999999   8999999999999999999999999999999 6 9999999999887 


Q ss_pred             cHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEccccccccc-ccCCCCchHHHHhhcceEEeeeccCccc
Q 043295           91 DLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADA-SKRAVPNMIDIVYKRIKIQGFLSTDHFD  169 (223)
Q Consensus        91 ~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~  169 (223)
                      ++.+.+++.+++++|++|||+|++.+..++++++++|+++.+|........ ......+...++.+++++.|+....+..
T Consensus       206 ~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  285 (336)
T 4b7c_A          206 DLAAGLKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQ  285 (336)
T ss_dssp             CHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGGGG
T ss_pred             HHHHHHHHhcCCCceEEEECCCcchHHHHHHHHhhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhhhh
Confidence            899999999866999999999999999999999999999999977632210 1123456677888999999998876545


Q ss_pred             hHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          170 LHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       170 ~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ...+.++++++++++|.+++.+..+++|+++.+||+.+.+++..||+|+++
T Consensus       286 ~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          286 RFPEGLKEMATWLAEGKLQSREDIVEGLETFPETLLKLFSGENFGKLVLKV  336 (336)
T ss_dssp             GHHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             hhHHHHHHHHHHHHCCCcccceeeecCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            567889999999999999999888899999999999999999999999975

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=1e-31  Score=211.75  Aligned_cols=200  Identities=20%  Similarity=0.204  Sum_probs=177.4

Q ss_pred             hhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           16 ANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        16 aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      +|++++.+.|||+++.+..  ++|++|||+   |++|++++|+|+..|++|+++++++++++.++ ++|++.++|+.+. 
T Consensus       126 aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~~~~~~~~-  203 (334)
T 3qwb_A          126 YAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAK-EYGAEYLINASKE-  203 (334)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTTS-
T ss_pred             hhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCcEEEeCCCc-
Confidence            7889999999999998875  899999999   89999999999999999999999999999999 8999999999887 


Q ss_pred             cHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc--
Q 043295           91 DLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH--  167 (223)
Q Consensus        91 ~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--  167 (223)
                      ++.+.+++.+++ ++|++|||+|++.+..++++++++|+++.+|.....     ...++...++.+++++.++....+  
T Consensus       204 ~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (334)
T 3qwb_A          204 DILRQVLKFTNGKGVDASFDSVGKDTFEISLAALKRKGVFVSFGNASGL-----IPPFSITRLSPKNITLVRPQLYGYIA  278 (334)
T ss_dssp             CHHHHHHHHTTTSCEEEEEECCGGGGHHHHHHHEEEEEEEEECCCTTCC-----CCCBCGGGGTTTTCEEECCCGGGGSC
T ss_pred             hHHHHHHHHhCCCCceEEEECCChHHHHHHHHHhccCCEEEEEcCCCCC-----CCCcchhhhhhCceEEEEEEeccccC
Confidence            899999999987 999999999998999999999999999999976532     224555667788999998776554  


Q ss_pred             -cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          168 -FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       168 -~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                       +....+.++++++++.+|.+++.++.++|++++++||+.+.+++..||+|+++++
T Consensus       279 ~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~q  334 (334)
T 3qwb_A          279 DPEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRTAAADIESRKTVGKLVLEIPQ  334 (334)
T ss_dssp             SHHHHHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCCBEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHHHCCCccCceeeEEcHHHHHHHHHHHHhCCCceEEEEecCC
Confidence             3344566789999999999999999999999999999999999999999999863

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.98  E-value=5.1e-31  Score=208.31  Aligned_cols=195  Identities=21%  Similarity=0.283  Sum_probs=173.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++++|++++++.|||+++.... ++|++|||+  |++|++++|+|+..|++|+++++++++++.++ ++|++.++|+++.
T Consensus       142 ~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~i~~~~~  220 (340)
T 3s2e_A          142 FVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR-RLGAEVAVNARDT  220 (340)
T ss_dssp             HHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEEETTTS
T ss_pred             HHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HcCCCEEEeCCCc
Confidence            5689999999999999997666 999999999  99999999999999999999999999999999 9999999999987


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCcc
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  168 (223)
                       ++.+.+++. .+++|++||++|+ +.+..++++++++|+++.+|.....      ...+...++.+++++.|+....  
T Consensus       221 -~~~~~~~~~-~g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~------~~~~~~~~~~~~~~i~g~~~~~--  290 (340)
T 3s2e_A          221 -DPAAWLQKE-IGGAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGD------FGTPIFDVVLKGITIRGSIVGT--  290 (340)
T ss_dssp             -CHHHHHHHH-HSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCSSE------EEEEHHHHHHTTCEEEECCSCC--
T ss_pred             -CHHHHHHHh-CCCCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCCCC------CCCCHHHHHhCCeEEEEEecCC--
Confidence             888888884 3489999999985 7899999999999999999876531      2445677888999999988766  


Q ss_pred             chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          169 DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                         .+.++++++++++|.+++.+ .+++|+++++||+.+.+++..||+|+++++
T Consensus       291 ---~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~Gkvvv~~~~  340 (340)
T 3s2e_A          291 ---RSDLQESLDFAAHGDVKATV-STAKLDDVNDVFGRLREGKVEGRVVLDFSR  340 (340)
T ss_dssp             ---HHHHHHHHHHHHTTSCCCCE-EEECGGGHHHHHHHHHTTCCCSEEEEECCC
T ss_pred             ---HHHHHHHHHHHHhCCCCceE-EEEeHHHHHHHHHHHHcCCCceEEEEecCC
Confidence               67799999999999999875 467999999999999999999999999864

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=99.98  E-value=1.7e-31  Score=211.87  Aligned_cols=202  Identities=22%  Similarity=0.372  Sum_probs=176.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|+++.++.|||+++.+..  ++|++|||+   |++|++++|+|+..|++|+++++++++++.++ ++|++.++|+.
T Consensus       142 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~~~~  220 (353)
T 4dup_A          142 AVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE-RLGAKRGINYR  220 (353)
T ss_dssp             HHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCSEEEETT
T ss_pred             HHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCCEEEeCC
Confidence            5588999999999999997655  999999999   89999999999999999999999999999999 89999999998


Q ss_pred             CcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           88 EETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      +. ++.+.+++.+++++|++|||+|++.+..++++++++|+++.+|......    ...++...++.+++++.|+.....
T Consensus       221 ~~-~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~----~~~~~~~~~~~~~~~i~g~~~~~~  295 (353)
T 4dup_A          221 SE-DFAAVIKAETGQGVDIILDMIGAAYFERNIASLAKDGCLSIIAFLGGAV----AEKVNLSPIMVKRLTVTGSTMRPR  295 (353)
T ss_dssp             TS-CHHHHHHHHHSSCEEEEEESCCGGGHHHHHHTEEEEEEEEECCCTTCSE----EEEEECHHHHHTTCEEEECCSTTS
T ss_pred             ch-HHHHHHHHHhCCCceEEEECCCHHHHHHHHHHhccCCEEEEEEecCCCc----ccCCCHHHHHhcCceEEEEecccc
Confidence            87 8999999888449999999999999999999999999999999765421    111566778889999999887654


Q ss_pred             c-----chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          168 F-----DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       168 ~-----~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      .     ....+.++++++++++|.+++.++.+++++++++||+.+.+++..||+|+++
T Consensus       296 ~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~~~gKvvl~~  353 (353)
T 4dup_A          296 TAEEKRAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDVADAHRLLEEGSHVGKVMLTV  353 (353)
T ss_dssp             CHHHHHHHHHHHHHHTHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred             chhhhHHHHHHHHHHHHHHHHCCCccCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            2     1223447889999999999999999999999999999999999999999975

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.98  E-value=8.7e-31  Score=207.64  Aligned_cols=195  Identities=19%  Similarity=0.269  Sum_probs=174.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++|+++.++.|||++++... ++|++|+|+  |++|.+++|+++.. |++|++++++++|++.++ ++|++.++|+++
T Consensus       139 ~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~-~~Ga~~~i~~~~  217 (348)
T 4eez_A          139 PIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK-KIGADVTINSGD  217 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH-HTTCSEEEEC-C
T ss_pred             HHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh-hcCCeEEEeCCC
Confidence            5689999999999999998777 999999999  99999999999976 679999999999999999 999999999998


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      . ++.+.+++.+++ ++|.++|++++ ..+..++.+++++|+++.+|.+...      ...+...++.+++++.|+....
T Consensus       218 ~-~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~i~gs~~~~  290 (348)
T 4eez_A          218 V-NPVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTE------MTLSVPTVVFDGVEVAGSLVGT  290 (348)
T ss_dssp             C-CHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCSCE------EEECHHHHHHSCCEEEECCSCC
T ss_pred             C-CHHHHhhhhcCCCCceEEEEeccCcchhheeheeecCCceEEEEeccCCC------CccCHHHHHhCCeEEEEEecCC
Confidence            8 999999999998 99999999886 6789999999999999999876532      2456778889999999988776


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                           +..++++++++++|+++|.+ .++||+++++||+.+.+++..||+||+++
T Consensus       291 -----~~~~~~~~~l~~~g~i~p~~-~~~~l~~~~~A~~~l~~g~~~GKvVl~~s  339 (348)
T 4eez_A          291 -----RLDLAEAFQFGAEGKVKPIV-ATRKLEEINDIIDEMKAGKIEGRMVIDFT  339 (348)
T ss_dssp             -----HHHHHHHHHHHHTTSCCCCE-EEECGGGHHHHHHHHHTTCCSSEEEEECC
T ss_pred             -----HHHHHHHHHHHHcCCCEEEE-EEEeHHHHHHHHHHHHCCCCccEEEEEcc
Confidence                 66788999999999999865 68999999999999999999999999985

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=99.98  E-value=1.6e-31  Score=211.25  Aligned_cols=199  Identities=19%  Similarity=0.220  Sum_probs=169.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|+++.++.|||+++.+..  ++|++|||+   |++|++++|+|+..|++|+++++++++++.++ ++|++.++|+.
T Consensus       134 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~v~~~~  212 (342)
T 4eye_A          134 DAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVK-SVGADIVLPLE  212 (342)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHTCSEEEESS
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCcEEecCc
Confidence            5588899999999999997665  899999999   89999999999999999999999999999999 89999999998


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                       . ++.+.+++.+++ ++|++|||+|++.+..++++++++|+++.+|.....     ...++...++.+++++.|+....
T Consensus       213 -~-~~~~~v~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~  285 (342)
T 4eye_A          213 -E-GWAKAVREATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAAGG-----IPTIKVNRLLLRNASLIGVAWGE  285 (342)
T ss_dssp             -T-THHHHHHHHTTTSCEEEEEESCC--CHHHHHHTEEEEEEEEEC---------------CCCCGGGTTCEEEECCHHH
T ss_pred             -h-hHHHHHHHHhCCCCceEEEECCchhHHHHHHHhhcCCCEEEEEEccCCC-----CCccCHHHHhhcCCEEEEEehhh
Confidence             5 899999999988 999999999998899999999999999999976542     12334445678999999988654


Q ss_pred             c----cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          167 H----FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       167 ~----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      +    ++...+.++.+.+++++| +++.++.+++|+++++||+.+.+++..||+|+++
T Consensus       286 ~~~~~~~~~~~~~~~~~~l~~~g-l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~P  342 (342)
T 4eye_A          286 FLRTHADYLYETQAGLEKLVAEG-MRPPVSARIPLSEGRQALQDFADGKVYGKMVLVP  342 (342)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHTT-CCCCEEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             hhhcCHHHHHHHHHHHHHHHHcC-CCCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            3    344567899999999999 9999999999999999999999999999999974

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=99.98  E-value=4.3e-31  Score=207.48  Aligned_cols=201  Identities=19%  Similarity=0.184  Sum_probs=175.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|++++.+.|||+++.+..  ++|++|||+   |++|++++|+|+..|++|+++++++++++.++ ++|++.++|+.
T Consensus       115 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~Ga~~~~~~~  193 (325)
T 3jyn_A          115 FEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-ALGAWETIDYS  193 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSEEEETT
T ss_pred             HHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCEEEeCC
Confidence            5688999999999999998876  899999999   89999999999999999999999999999999 99999999998


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhh-cceEEeeecc
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYK-RIKIQGFLST  165 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~  165 (223)
                      +. ++.+.+++.+++ ++|++|||+|++.+..++++++++|+++.+|.....     ...++...+..+ .+.+.+....
T Consensus       194 ~~-~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  267 (325)
T 3jyn_A          194 HE-DVAKRVLELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNASGP-----VSGVNLGILAQKDSVYVTRPTLG  267 (325)
T ss_dssp             TS-CHHHHHHHHTTTCCEEEEEESSCGGGHHHHHTTEEEEEEEEECCCTTCC-----CCSCCTHHHHHTTSCEEECCCHH
T ss_pred             Cc-cHHHHHHHHhCCCCceEEEECCChHHHHHHHHHhcCCCEEEEEecCCCC-----CCCCCHHHHhhcCcEEEEeeeee
Confidence            87 899999999988 999999999998899999999999999999976542     224555666666 5666655433


Q ss_pred             Cc---cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          166 DH---FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       166 ~~---~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      .+   +....+.++++++++++|++++.++.++|++++++||+.+.+++..||+|+.+
T Consensus       268 ~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          268 SYANNAQNLQTMADELFDMLASGKLKVDGIEQYALKDAAKAQIELSARRTTGSTILIP  325 (325)
T ss_dssp             HHSCSTTHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred             eecCCHHHHHHHHHHHHHHHHCCCeeCccccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            32   44556778899999999999999999999999999999999999999999974

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.98  E-value=1.4e-30  Score=206.14  Aligned_cols=209  Identities=53%  Similarity=0.967  Sum_probs=176.5

Q ss_pred             hhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           15 FANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++|++++++.|||+++.+..  ++|++|||+   |++|++++|+++..|++|+++++++++++.+++++|++.++|+.+.
T Consensus       132 ~aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~  211 (345)
T 2j3h_A          132 YTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEE  211 (345)
T ss_dssp             GGTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSC
T ss_pred             HHHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCH
Confidence            47889999999999997655  899999999   7999999999999999999999999999998746999999998763


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccc
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFD  169 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  169 (223)
                      +++.+.+++.+++++|++||++|++.+..++++++++|+++.+|.....+........+...++.+++++.|+....+..
T Consensus       212 ~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  291 (345)
T 2j3h_A          212 SDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYD  291 (345)
T ss_dssp             SCSHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGGG
T ss_pred             HHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccCCccccccHHHHhhhceeeceeeehhhhh
Confidence            36778888877668999999999988999999999999999999765421111122345567888999999987655444


Q ss_pred             hHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecCC
Q 043295          170 LHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE  223 (223)
Q Consensus       170 ~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~~  223 (223)
                      ...+.++++++++++|.+++.+..+++|+++.+||+.+.+++..||+|+++++|
T Consensus       292 ~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~~  345 (345)
T 2j3h_A          292 KYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVVARE  345 (345)
T ss_dssp             GHHHHHHHHHHHHHTTSSCCCEEEEESGGGSHHHHHHHHTTCCSSEEEEESSCC
T ss_pred             hHHHHHHHHHHHHHCCCCcCcccccCCHHHHHHHHHHHHcCCCceEEEEEeCCC
Confidence            456779999999999999988877899999999999999999999999999765

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.98  E-value=5.4e-31  Score=208.57  Aligned_cols=193  Identities=18%  Similarity=0.228  Sum_probs=170.9

Q ss_pred             hhhhhccccchhhHHHHHHHH--h-hCCCEEEEE--CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCeeeec
Q 043295           13 YVFANGAGTSGFTAYVGFYEI--S-QKGEKVFVS--GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDDAFNY   86 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~--~-~~g~~vlI~--g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~~~~~   86 (223)
                      ++++|++++++.|||+++.+.  . ++|++|+|+  |++|++++|+|+.. |++|++++.++++++.++ ++|++.++++
T Consensus       145 ~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~-~lGa~~~i~~  223 (345)
T 3jv7_A          145 PVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAR-EVGADAAVKS  223 (345)
T ss_dssp             HHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH-HTTCSEEEEC
T ss_pred             HHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcCCCEEEcC
Confidence            568999999999999999995  4 999999999  99999999999999 679999999999999999 9999999998


Q ss_pred             CCcccHHHHHHHhCCC-CccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           87 KEETDLKATLKRYFPD-GIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        87 ~~~~~~~~~i~~~~~~-~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      ++  ++.+.+++.+++ ++|++|||+|++ .+..++++++++|+++.+|......     ..++. .++.+++++.|+..
T Consensus       224 ~~--~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~-----~~~~~-~~~~~~~~i~g~~~  295 (345)
T 3jv7_A          224 GA--GAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAH-----AKVGF-FMIPFGASVVTPYW  295 (345)
T ss_dssp             ST--THHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTCC-----EEEST-TTSCTTCEEECCCS
T ss_pred             CC--cHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCC-----CCcCH-HHHhCCCEEEEEec
Confidence            75  688999999988 999999999986 8999999999999999999765421     12233 56778999998887


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ..     .+.++++++++++|.+++ +..+++|+++++||+.+.+++..||+|+++
T Consensus       296 ~~-----~~~~~~~~~l~~~g~l~~-~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p  345 (345)
T 3jv7_A          296 GT-----RSELMEVVALARAGRLDI-HTETFTLDEGPAAYRRLREGSIRGRGVVVP  345 (345)
T ss_dssp             CC-----HHHHHHHHHHHHTTCCCC-CEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred             CC-----HHHHHHHHHHHHcCCCce-EEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence            66     677899999999999998 457899999999999999999999999864

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=99.97  E-value=2.3e-30  Score=204.93  Aligned_cols=199  Identities=19%  Similarity=0.231  Sum_probs=169.2

Q ss_pred             hhhhhccccchhhHHHHHHHHh--h------CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--Q------KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD   81 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~------~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~   81 (223)
                      ++++|++++++.|||+++.+..  +      +|++|||+   |++|++++|+|+..|++|+++++++++++.++ ++|++
T Consensus       119 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~  197 (346)
T 3fbg_A          119 AEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTK-KMGAD  197 (346)
T ss_dssp             HHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHH-HHTCS
T ss_pred             HHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCc
Confidence            5589999999999999997665  5      89999999   89999999999999999999999999999999 89999


Q ss_pred             eeeecCCcccHHHHHHHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEE
Q 043295           82 DAFNYKEETDLKATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQ  160 (223)
Q Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (223)
                      .++++++  ++.+.+++..++++|++|||+|+. .+..++++++++|+++.++...        ..++...+..+++++.
T Consensus       198 ~vi~~~~--~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~~~--------~~~~~~~~~~~~~~~~  267 (346)
T 3fbg_A          198 IVLNHKE--SLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFE--------NDQDLNALKPKSLSFS  267 (346)
T ss_dssp             EEECTTS--CHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESSCCS--------SCBCGGGGTTTTCEEE
T ss_pred             EEEECCc--cHHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccCCEEEEECCCC--------CCCccccccccceEEE
Confidence            9999875  688888888444999999999985 5799999999999999887432        1345556677888888


Q ss_pred             eeeccCc-------cchHHHHHHHHHHHHHcCCCCccceeee---ccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          161 GFLSTDH-------FDLHQDFISMTCDALRAGKIQPLEDISN---GVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       161 g~~~~~~-------~~~~~~~~~~~~~~~~~g~i~~~~~~~~---~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                      ++.....       .....+.++++++++++|.+++.++.++   +++++.+||+.+.+++..||+|+++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~  339 (346)
T 3fbg_A          268 HEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNE  339 (346)
T ss_dssp             ECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSCCCEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC--
T ss_pred             EEEEecccccchhhHHHHHHHHHHHHHHHHCCCEECCccceecCCCHHHHHHHHHHHhcCCcceEEEEecCC
Confidence            8654321       2234577899999999999999988887   899999999999999999999999864

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=99.97  E-value=4.6e-30  Score=204.12  Aligned_cols=190  Identities=18%  Similarity=0.227  Sum_probs=167.8

Q ss_pred             hhhhh---ccccchhhHHHHHHH--Hh-hCCCEEEEE--CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCee
Q 043295           13 YVFAN---GAGTSGFTAYVGFYE--IS-QKGEKVFVS--GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDDA   83 (223)
Q Consensus        13 ~~~aa---~l~~~~~ta~~~l~~--~~-~~g~~vlI~--g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~~   83 (223)
                      ++++|   ++++++.|||+++.+  .. ++|++|||+  |++|++++|+|+.. |++|+++++++++++.++ ++|++++
T Consensus       157 ~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~v  235 (359)
T 1h2b_A          157 REKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RLGADHV  235 (359)
T ss_dssp             HHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HTTCSEE
T ss_pred             HHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HhCCCEE
Confidence            45777   789999999999998  45 999999999  99999999999999 999999999999999999 9999999


Q ss_pred             eecCCcccHHHHHHHhCCC-CccEEEcCCChH---HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceE
Q 043295           84 FNYKEETDLKATLKRYFPD-GIDVYFDNVGGE---MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKI  159 (223)
Q Consensus        84 ~~~~~~~~~~~~i~~~~~~-~~d~vid~~g~~---~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (223)
                      +|+++.  +.+.+++.+++ ++|++|||+|++   .+..++++  ++|+++.+|....      . .++...++.+++++
T Consensus       236 i~~~~~--~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~------~-~~~~~~~~~~~~~i  304 (359)
T 1h2b_A          236 VDARRD--PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGE------L-RFPTIRVISSEVSF  304 (359)
T ss_dssp             EETTSC--HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSC------C-CCCHHHHHHTTCEE
T ss_pred             Eeccch--HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCC------C-CCCHHHHHhCCcEE
Confidence            998863  77888888887 999999999986   78888877  9999999987542      1 45666788899999


Q ss_pred             EeeeccCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          160 QGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       160 ~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      .|+....     .+.++++++++++|.+++.+ .+++|+++++||+.+.+++..||+|+++
T Consensus       305 ~g~~~~~-----~~~~~~~~~l~~~g~l~~~i-~~~~l~~~~~A~~~~~~~~~~gKvvv~~  359 (359)
T 1h2b_A          305 EGSLVGN-----YVELHELVTLALQGKVRVEV-DIHKLDEINDVLERLEKGEVLGRAVLIP  359 (359)
T ss_dssp             EECCSCC-----HHHHHHHHHHHHTTSCCCCE-EEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             EEecCCC-----HHHHHHHHHHHHcCCCcceE-EEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence            9987654     56789999999999999988 8999999999999999988889999974

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.97  E-value=7.8e-30  Score=201.36  Aligned_cols=195  Identities=23%  Similarity=0.274  Sum_probs=172.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++++|++++++.|||+++.+.. ++|++|||+  |++|++++|+|+..|++|+++++++++++.++ ++|++.++|+.+.
T Consensus       140 ~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~d~~~~  218 (339)
T 1rjw_A          140 FEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-ELGADLVVNPLKE  218 (339)
T ss_dssp             HHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCSEEECTTTS
T ss_pred             HHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HCCCCEEecCCCc
Confidence            4578999999999999998888 999999999  89999999999999999999999999999999 8999999998876


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCcc
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  168 (223)
                       ++.+.+++.+ +++|++||++|+ ..+..++++++++|+++.+|.....      ..++...++.+++++.|+....  
T Consensus       219 -~~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~i~g~~~~~--  288 (339)
T 1rjw_A          219 -DAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEE------MPIPIFDTVLNGIKIIGSIVGT--  288 (339)
T ss_dssp             -CHHHHHHHHH-SSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSE------EEEEHHHHHHTTCEEEECCSCC--
T ss_pred             -cHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCC------CccCHHHHHhCCcEEEEeccCC--
Confidence             7888888877 689999999997 7889999999999999999876531      2455667788999999977655  


Q ss_pred             chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          169 DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                         .+.++++++++++|.+++.+ .++||+++++||+.+.+++..||+|+++++
T Consensus       289 ---~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  338 (339)
T 1rjw_A          289 ---RKDLQEALQFAAEGKVKTII-EVQPLEKINEVFDRMLKGQINGRVVLTLED  338 (339)
T ss_dssp             ---HHHHHHHHHHHHTTSCCCCE-EEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred             ---HHHHHHHHHHHHcCCCCccE-EEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence               56788999999999999874 689999999999999998888999999875

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=99.97  E-value=1.4e-30  Score=213.14  Aligned_cols=197  Identities=19%  Similarity=0.221  Sum_probs=172.8

Q ss_pred             hhhhhccccchhhHHHHHHHH---h-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEI---S-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFN   85 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~---~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~   85 (223)
                      ++++|+++.++.|||+++...   . ++|++|+|+   |++|++++|+|+..|++|++++++++++++++ ++|++.++|
T Consensus       201 ~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~-~lGa~~vi~  279 (456)
T 3krt_A          201 WEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICR-AMGAEAIID  279 (456)
T ss_dssp             HHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCCEEEE
T ss_pred             HHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHH-hhCCcEEEe
Confidence            558888889999999999764   3 899999999   89999999999999999999999999999999 999999999


Q ss_pred             cCCccc-----------------HHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCC
Q 043295           86 YKEETD-----------------LKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVP  147 (223)
Q Consensus        86 ~~~~~~-----------------~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  147 (223)
                      +.+. +                 +.+.+++.+++ ++|+||||+|++.+..++++++++|+++.+|...+.     ...+
T Consensus       280 ~~~~-d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~  353 (456)
T 3krt_A          280 RNAE-GYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTITTCASTSGY-----MHEY  353 (456)
T ss_dssp             TTTT-TCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHHHHHHHHHHEEEEEEEEESCCTTCS-----EEEE
T ss_pred             cCcC-cccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCchhHHHHHHHhhCCcEEEEEecCCCc-----cccc
Confidence            8764 3                 34788888887 999999999999999999999999999999976542     1234


Q ss_pred             chHHHHhhcceEEeeeccCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          148 NMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      +...++.+..++.|+....     .+.+.++++++++|.+++.++.+++|+++++|++.+.+++..||+|+.+.
T Consensus       354 ~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~eA~~~l~~~~~~GKvvv~~~  422 (456)
T 3krt_A          354 DNRYLWMSLKRIIGSHFAN-----YREAWEANRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVGVLCL  422 (456)
T ss_dssp             EHHHHHHTTCEEEECCSCC-----HHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCSSSEEEEESS
T ss_pred             CHHHHHhcCeEEEEeccCC-----HHHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            5677788889999988766     34456789999999999999999999999999999999999999999874

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.97  E-value=1.5e-30  Score=206.20  Aligned_cols=200  Identities=18%  Similarity=0.179  Sum_probs=168.5

Q ss_pred             hhhhhccccchhhHHHHHHHHhh-CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEISQ-KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~~-~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++|++++.++|||+++....+ .+++|+|+   |++|++++|+|+..|++|+++++++++++.++ ++|++.++|+++
T Consensus       140 ~~~aa~l~~~~~ta~~~~~~~~~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~~Ga~~~~~~~~  218 (349)
T 3pi7_A          140 DEDGAAMIVNPLTAIAMFDIVKQEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-DIGAAHVLNEKA  218 (349)
T ss_dssp             C--GGGSSHHHHHHHHHHHHHHHHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH-HHTCSEEEETTS
T ss_pred             HHHHhhccccHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCEEEECCc
Confidence            55899999999999977665554 44899998   89999999999999999999999999999999 999999999988


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCch-HHHHhhcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNM-IDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~  166 (223)
                      . ++.+.+++.+++ ++|++|||+|++.+..++++++++|+++.+|.....     ...++. ..++.+++++.|+....
T Consensus       219 ~-~~~~~v~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~~i~g~~~~~  292 (349)
T 3pi7_A          219 P-DFEATLREVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRLDPD-----ATVIREPGQLIFQHKHIEGFWLSE  292 (349)
T ss_dssp             T-THHHHHHHHHHHHCCCEEEESSCHHHHHHHHHHSCTTCEEEECCCSCCS-----CCCCSCTHHHHHSCCEEEECCHHH
T ss_pred             H-HHHHHHHHHhcCCCCcEEEECCCChhHHHHHhhhcCCCEEEEEeccCCC-----CCCCCchhhhhccccEEEEEEehh
Confidence            7 899999999887 999999999998889999999999999999975542     224455 77888999999988765


Q ss_pred             c----cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          167 H----FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       167 ~----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      +    +....+.++++++++++|.+++.++.+++|+++.+||+. .+++..||+|+++
T Consensus       293 ~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~-~~~~~~gKvvl~p  349 (349)
T 3pi7_A          293 WMRQFKERRGPAILEAQKRFSDGRWSTDVTAVVPLAEAIAWVPA-ELTKPNGKVFIRP  349 (349)
T ss_dssp             HHHHTHHHHHHHHHHC-CTTTTSSCCC-CCEEEEHHHHHHHHHH-HHTSSSSCEEEEC
T ss_pred             hhhhCcHHHHHHHHHHHHHHHcCCcccccceEEcHHHHHHHHHH-HhCCCCceEEEeC
Confidence            4    223457788999999999999999999999999999994 4555779999974

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.97  E-value=4.7e-30  Score=203.67  Aligned_cols=199  Identities=18%  Similarity=0.116  Sum_probs=167.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++|.++.++.|||+++.... ++|++|||+  |++|++++|+|+..|+ +|+++++++++++.++ ++|+++++|+++
T Consensus       142 ~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~  220 (352)
T 3fpc_A          142 LEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIAL-EYGATDIINYKN  220 (352)
T ss_dssp             HHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHH-HHTCCEEECGGG
T ss_pred             HHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH-HhCCceEEcCCC
Confidence            5588888899999999996666 999999999  9999999999999999 8999999999999999 999999999988


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCch--HHHHhhcceEEeeec
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNM--IDIVYKRIKIQGFLS  164 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~  164 (223)
                      . ++.+.+++.+++ ++|++|||+|+ +.+..++++++++|+++.+|......    ...++.  .....++.++.|+..
T Consensus       221 ~-~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~----~~~~~~~~~~~~~~~~~i~g~~~  295 (352)
T 3fpc_A          221 G-DIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGD----NIDIPRSEWGVGMGHKHIHGGLC  295 (352)
T ss_dssp             S-CHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCS----EEEEETTTTGGGTBCEEEEEBCC
T ss_pred             c-CHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCC----ceecchhHhhhhccccEEEEeec
Confidence            7 899999999988 99999999998 68999999999999999999765321    111111  122346777877654


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCcc--ceeeec-cCCHHHHHHHhHcCCC-cCcEEEEec
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQPL--EDISNG-VDSIPSAFTGFFRGDN-IGKKFVRIA  221 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~-l~~~~~a~~~~~~~~~-~gk~v~~~~  221 (223)
                      ..    ..+.++++++++++|.+++.  ++.+++ |+++++||+.+.+++. .+|+|++++
T Consensus       296 ~~----~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~~  352 (352)
T 3fpc_A          296 PG----GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA  352 (352)
T ss_dssp             CC----HHHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEECC
T ss_pred             cC----chhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEeC
Confidence            32    15668999999999999975  678898 9999999999998764 489999874

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.97  E-value=9.7e-30  Score=203.61  Aligned_cols=200  Identities=17%  Similarity=0.199  Sum_probs=169.4

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|.+++++.|||+++.+..  ++|++|||+  |++|++++|+|+..|+ +|++++++++++++++ ++|+++++|+.
T Consensus       168 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~  246 (378)
T 3uko_A          168 LDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK-KFGVNEFVNPK  246 (378)
T ss_dssp             HHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH-TTTCCEEECGG
T ss_pred             HHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcCCcEEEccc
Confidence            5689999999999999987665  899999999  9999999999999999 8999999999999999 99999999997


Q ss_pred             --CcccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCchHHHHhhcceEEeee
Q 043295           88 --EETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFL  163 (223)
Q Consensus        88 --~~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  163 (223)
                        +. ++.+.+++.+++++|+||||+|+ +.+..++++++++ |+++.+|.....    ....++...++ ++.++.|+.
T Consensus       247 ~~~~-~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~----~~~~~~~~~~~-~~~~i~g~~  320 (378)
T 3uko_A          247 DHDK-PIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASG----QEISTRPFQLV-TGRVWKGTA  320 (378)
T ss_dssp             GCSS-CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTT----CCEEECTHHHH-TTCEEEECS
T ss_pred             cCch-hHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCC----CccccCHHHHh-cCcEEEEEE
Confidence              44 89999999998899999999998 6889999999996 999999975431    12233344444 488888887


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          164 STDHFDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                      ...+.  ..+.+.++++++.+|.+++  .++.++||+++++||+.+.+++.. |+|+++++
T Consensus       321 ~~~~~--~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~-Kvvi~~~~  378 (378)
T 3uko_A          321 FGGFK--SRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCL-RCVLDTSK  378 (378)
T ss_dssp             GGGCC--HHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCS-EEEEETTC
T ss_pred             ecCCC--chHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCce-EEEEecCC
Confidence            65321  2567889999999999885  478899999999999999888765 99999864

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.97  E-value=2.4e-29  Score=200.94  Aligned_cols=199  Identities=20%  Similarity=0.229  Sum_probs=171.1

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|++++++.|||+++.+..  ++|++|||+  |++|++++|+|+..|+ +|++++++++++++++ ++|+++++|++
T Consensus       165 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~  243 (371)
T 1f8f_A          165 IELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QLGATHVINSK  243 (371)
T ss_dssp             GGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HHTCSEEEETT
T ss_pred             HHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-HcCCCEEecCC
Confidence            4588899999999999996555  899999999  9999999999999999 7999999999999999 99999999998


Q ss_pred             CcccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      +. ++.+.+++.+++++|+|||++|+ +.+..++++++++|+++.+|.....    ....+++..++.+++++.|+....
T Consensus       244 ~~-~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~~~i~g~~~~~  318 (371)
T 1f8f_A          244 TQ-DPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLG----TTAQFDVNDLLLGGKTILGVVEGS  318 (371)
T ss_dssp             TS-CHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTT----CCCCCCHHHHHHTTCEEEECSGGG
T ss_pred             cc-CHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCC----CccccCHHHHHhCCCEEEEeCCCC
Confidence            87 88999999887799999999997 6789999999999999999976431    123566677888999999987543


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCcc--ceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPL--EDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      .  ...+.++++++++++|.+++.  ++. +||+++++||+.+.+++. +|+|++++
T Consensus       319 ~--~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~-~Kvvv~~~  371 (371)
T 1f8f_A          319 G--SPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGIT-LKPIIKIA  371 (371)
T ss_dssp             S--CHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSC-SEEEEECC
T ss_pred             C--chHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCc-eEEEEeeC
Confidence            2  124678999999999999864  666 999999999999988775 79999863

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=99.97  E-value=7.9e-30  Score=201.70  Aligned_cols=196  Identities=21%  Similarity=0.280  Sum_probs=172.8

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|+++.++.|||+++.+..  +++++|||+   |++|++++|+++..|++|+++++++++++.++ ++|++.++|+.
T Consensus       141 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~ga~~~~d~~  219 (343)
T 2eih_A          141 FEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-ALGADETVNYT  219 (343)
T ss_dssp             HHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCSEEEETT
T ss_pred             HHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCCCEEEcCC
Confidence            5588889999999999998864  899999999   79999999999999999999999999999998 89999999988


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      +. ++.+.+++.+++ ++|++||++|++.+..++++++++|+++.+|.....     ...+++..++.+++++.|+....
T Consensus       220 ~~-~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~  293 (343)
T 2eih_A          220 HP-DWPKEVRRLTGGKGADKVVDHTGALYFEGVIKATANGGRIAIAGASSGY-----EGTLPFAHVFYRQLSILGSTMAS  293 (343)
T ss_dssp             ST-THHHHHHHHTTTTCEEEEEESSCSSSHHHHHHHEEEEEEEEESSCCCSC-----CCCCCTTHHHHTTCEEEECCSCC
T ss_pred             cc-cHHHHHHHHhCCCCceEEEECCCHHHHHHHHHhhccCCEEEEEecCCCC-----cCccCHHHHHhCCcEEEEecCcc
Confidence            76 788889888876 899999999987889999999999999999976532     12345567788999999876433


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                           .+.++++++++++|.+++.++.+|+|+++.+||+.+.+++..||+|+++
T Consensus       294 -----~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  342 (343)
T 2eih_A          294 -----KSRLFPILRFVEEGKLKPVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV  342 (343)
T ss_dssp             -----GGGHHHHHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred             -----HHHHHHHHHHHHcCCCCCceeEEeeHHHHHHHHHHHHcCCCceEEEEec
Confidence                 4568899999999999999999999999999999999988889999976

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.97  E-value=1.4e-29  Score=200.05  Aligned_cols=201  Identities=17%  Similarity=0.179  Sum_probs=168.2

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|++++.++|||+++.+..  ++|++|||+   |++|++++|+|+..|++|+++++++++++.++ ++|++.++|+.
T Consensus       119 ~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~lga~~~~~~~  197 (340)
T 3gms_A          119 DFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELL-RLGAAYVIDTS  197 (340)
T ss_dssp             HHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HHTCSEEEETT
T ss_pred             HHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hCCCcEEEeCC
Confidence            5688999999999999997766  999999999   48999999999999999999999999999999 89999999998


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHH-hhcceEEeeecc
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIV-YKRIKIQGFLST  165 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~  165 (223)
                      +. ++.+.+++.+++ ++|++|||+|+.....++++++++|+++.+|.....       ..++..+. ...+.+..+...
T Consensus       198 ~~-~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-------~~~~~~~~~~~~~~~~~~~~~  269 (340)
T 3gms_A          198 TA-PLYETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLSGI-------QVNWAEIVTKAKVHANIFHLR  269 (340)
T ss_dssp             TS-CHHHHHHHHTTTSCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTSC-------CCCHHHHHHTSCCEEEECCHH
T ss_pred             cc-cHHHHHHHHhCCCCCcEEEECCCChhHHHHHHHhcCCCEEEEEeecCCC-------CCCHHHhhhcccceEEEEEeh
Confidence            87 899999999988 999999999998777888999999999999976532       23333333 234444444433


Q ss_pred             Cc-----cchHHHHHHHHHHHHHcCCCCc-cceeeeccCCHHHHHHHhHcCCC-cCcEEEEecC
Q 043295          166 DH-----FDLHQDFISMTCDALRAGKIQP-LEDISNGVDSIPSAFTGFFRGDN-IGKKFVRIAG  222 (223)
Q Consensus       166 ~~-----~~~~~~~~~~~~~~~~~g~i~~-~~~~~~~l~~~~~a~~~~~~~~~-~gk~v~~~~~  222 (223)
                      .+     .....+.++++++++++|.+++ .++.+|||+++.+||+.+.+++. .||+|+++.+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~i~~~~~l~~~~~A~~~~~~~~~~~GKvvl~~~~  333 (340)
T 3gms_A          270 HWNDEVSPYKWQETFRHLIRLVENEQLRFMKVHSTYELADVKAAVDVVQSAEKTKGKVFLTSYE  333 (340)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHTTSSCCCCEEEEEEGGGHHHHHHHHHCTTCCSSEEEEECC-
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHcCCCccccccEEEeHHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            22     2334578899999999999998 47888999999999999999985 5999999854

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=99.97  E-value=1.2e-29  Score=200.62  Aligned_cols=196  Identities=20%  Similarity=0.357  Sum_probs=169.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|+++.++.|||+++.+..  ++|++|||+   |++|++++|+|+..|++|+++ .++++++.++ ++|++. +| .
T Consensus       125 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~-~lGa~~-i~-~  200 (343)
T 3gaz_A          125 MRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVR-DLGATP-ID-A  200 (343)
T ss_dssp             HHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHH-HHTSEE-EE-T
T ss_pred             HHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHH-HcCCCE-ec-c
Confidence            5588999999999999995555  999999999   899999999999999999999 7899999999 999988 77 5


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      +. ++.+.+++.+++ ++|++|||+|++.+..++++++++|+++.+|...         ..+...+..+++++.|+....
T Consensus       201 ~~-~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~~---------~~~~~~~~~~~~~~~g~~~~~  270 (343)
T 3gaz_A          201 SR-EPEDYAAEHTAGQGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGWG---------THKLAPLSFKQATYSGVFTLH  270 (343)
T ss_dssp             TS-CHHHHHHHHHTTSCEEEEEESSCTHHHHHHHHHEEEEEEEEESCCCS---------CCCCHHHHHTTCEEEECCTTH
T ss_pred             CC-CHHHHHHHHhcCCCceEEEECCCcHHHHHHHHHHhcCCeEEEEcccC---------ccccchhhhcCcEEEEEEecc
Confidence            55 789999998887 9999999999999999999999999999998654         234567788999998876432


Q ss_pred             c------cchHHHHHHHHHHHHHcCCCCccce-eeeccCCHHHHHHHhHcCCC----cCcEEEEecC
Q 043295          167 H------FDLHQDFISMTCDALRAGKIQPLED-ISNGVDSIPSAFTGFFRGDN----IGKKFVRIAG  222 (223)
Q Consensus       167 ~------~~~~~~~~~~~~~~~~~g~i~~~~~-~~~~l~~~~~a~~~~~~~~~----~gk~v~~~~~  222 (223)
                      .      +....+.++++++++++|.+++.++ .+++|+++.+||+.+.+++.    .||+|+++..
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~~~  337 (343)
T 3gaz_A          271 TLLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITVEG  337 (343)
T ss_dssp             HHHHTCSHHHHHHHHHHHHHHHHTTCCCCCBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEECC-
T ss_pred             chhcccchHHHHHHHHHHHHHHHCCCcccCccCcEecHHHHHHHHHHHHcCCCcccccceEEEEecc
Confidence            1      2334578999999999999999998 79999999999999998865    6899999853

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.97  E-value=5.1e-29  Score=198.30  Aligned_cols=206  Identities=31%  Similarity=0.458  Sum_probs=173.6

Q ss_pred             hhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           15 FANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++|+++.++.|||+++.+..  ++|++|||+   |++|++++|+|+..|++|+++++++++++.++ ++|++.++|+++.
T Consensus       140 ~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~-~~Ga~~~~~~~~~  218 (362)
T 2c0c_A          140 EYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLK-SLGCDRPINYKTE  218 (362)
T ss_dssp             HHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTTS
T ss_pred             HhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HcCCcEEEecCCh
Confidence            67899999999999998876  899999999   89999999999999999999999999999999 8999999999876


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEccccccccccc--CC--CCchHHHHhhcceEEeeecc
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASK--RA--VPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~--~~--~~~~~~~~~~~~~~~g~~~~  165 (223)
                       ++.+.+++.+++++|++|||+|+..+..++++++++|+++.+|..........  ..  ......++.+++++.|+...
T Consensus       219 -~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~  297 (362)
T 2c0c_A          219 -PVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLN  297 (362)
T ss_dssp             -CHHHHHHHHCTTCEEEEEECSCTHHHHHHHHHEEEEEEEEECCCGGGTTSSSCCCCCCCTTHHHHHHHHTCEEEECCGG
T ss_pred             -hHHHHHHHhcCCCCCEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCCcCcccccccccccccHHHHHhhcceEEEEEhh
Confidence             88888888876699999999999889999999999999999997654211000  00  01125677899999998765


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCccce--------eeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          166 DHFDLHQDFISMTCDALRAGKIQPLED--------ISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~i~~~~~--------~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                      .+.....+.++++++++++|.+++.+.        ..++|+++.+||+.+.+++..||+|+++++
T Consensus       298 ~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  362 (362)
T 2c0c_A          298 HYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELPH  362 (362)
T ss_dssp             GCGGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEECCC
T ss_pred             hhhhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHHcCCCCceEEEEcCC
Confidence            544445678999999999999998754        456999999999999998888999998753

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=99.97  E-value=4.5e-31  Score=207.32  Aligned_cols=197  Identities=21%  Similarity=0.244  Sum_probs=168.4

Q ss_pred             hhhhhccccchhhHHHHHHHHh----hC--CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS----QK--GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA   83 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~----~~--g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~   83 (223)
                      ++++|+++.++.|||+++....    ++  ++ |||+   |++|++++|+|+..|++|+++++++++++.++ ++|++++
T Consensus       118 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~v  195 (324)
T 3nx4_A          118 SRNAMIIGTAGFTAMLCVMALEDAGIRPQDGE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLK-SLGANRI  195 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH-HHTCSEE
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhhcccCCCCCe-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCCEE
Confidence            5689999999999999987543    44  45 9999   89999999999999999999999999999999 9999999


Q ss_pred             eecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeee
Q 043295           84 FNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFL  163 (223)
Q Consensus        84 ~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  163 (223)
                      +|+++. +.   +++.+++++|++|||+|++.+..++++++++|+++.+|.....     ....+...++.+++++.|+.
T Consensus       196 i~~~~~-~~---~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~~~g~~  266 (324)
T 3nx4_A          196 LSRDEF-AE---SRPLEKQLWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGF-----ALPTTVMPFILRNVRLQGVD  266 (324)
T ss_dssp             EEGGGS-SC---CCSSCCCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTCS-----EEEEESHHHHHHCCEEEECC
T ss_pred             EecCCH-HH---HHhhcCCCccEEEECCCcHHHHHHHHHHhcCCEEEEEecCCCC-----CCCCCHHHHhhcCeEEEEEe
Confidence            998875 33   5556666999999999999999999999999999999976542     12345667888999999987


Q ss_pred             ccCc-cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          164 STDH-FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       164 ~~~~-~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      .... +....+.++.+.+++++|.+++. +.+++|+++++||+.+.+++..||+|++++
T Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~g~l~~~-~~~~~l~~~~~A~~~~~~~~~~gkvvv~~~  324 (324)
T 3nx4_A          267 SVMTPPARRAEAWARLVKDLPESFYAQA-ATEITLADAPKFADAIINNQVQGRTLVKIK  324 (324)
T ss_dssp             STTCCHHHHHHHHHHHHHHSCHHHHHHH-EEEEEGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             ccccChHHHHHHHHHHHHHHHcCCCCCC-ceeEeHHHHHHHHHHHHhCCCCceEEEecC
Confidence            6543 34445778999999999999987 889999999999999999999999999874

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.97  E-value=2.1e-29  Score=199.66  Aligned_cols=199  Identities=23%  Similarity=0.327  Sum_probs=171.1

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|++++++.|||+++.+..  ++|++|+|+   |++|++++|+++..|++|+++++++++.+.++ ++|++.++|+.
T Consensus       145 ~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~~~d~~  223 (351)
T 1yb5_A          145 FKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QNGAHEVFNHR  223 (351)
T ss_dssp             HHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETT
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHH-HcCCCEEEeCC
Confidence            4588999999999999998655  899999999   89999999999999999999999999999998 99999999998


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      +. ++.+.+.+.+++ ++|++|||+|++.+..++++++++|+++.+|....       ..++...++.+++++.|+....
T Consensus       224 ~~-~~~~~~~~~~~~~~~D~vi~~~G~~~~~~~~~~l~~~G~iv~~g~~~~-------~~~~~~~~~~~~~~i~g~~~~~  295 (351)
T 1yb5_A          224 EV-NYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRGT-------IEINPRDTMAKESSIIGVTLFS  295 (351)
T ss_dssp             ST-THHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCCSC-------EEECTHHHHTTTCEEEECCGGG
T ss_pred             Cc-hHHHHHHHHcCCCCcEEEEECCChHHHHHHHHhccCCCEEEEEecCCC-------CccCHHHHHhCCcEEEEEEeec
Confidence            87 888889888877 89999999999888999999999999999986421       1334566788999999986543


Q ss_pred             c-cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHH-hHcCCCcCcEEEEe
Q 043295          167 H-FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTG-FFRGDNIGKKFVRI  220 (223)
Q Consensus       167 ~-~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~-~~~~~~~gk~v~~~  220 (223)
                      . +....+.++.+.+++.+|.+++.++.+|||+++++|++. +.+++..||+|+++
T Consensus       296 ~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~~gKvvi~~  351 (351)
T 1yb5_A          296 STKEEFQQYAAALQAGMEIGWLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  351 (351)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCccCccceEEcHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            2 344566777888899999999999999999999999998 55566789999974

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=99.97  E-value=1e-29  Score=200.32  Aligned_cols=203  Identities=21%  Similarity=0.265  Sum_probs=174.0

Q ss_pred             hhh--hhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeee
Q 043295           13 YVF--ANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFN   85 (223)
Q Consensus        13 ~~~--aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~   85 (223)
                      +++  +|+++.++.|||+++.+..  +++++|+|+   |++|++++|+++..|++|+++++++++++.++ ++|++.++|
T Consensus       118 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~g~~~~~d  196 (333)
T 1wly_A          118 LDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR-KLGCHHTIN  196 (333)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCSEEEE
T ss_pred             hHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCEEEE
Confidence            346  8999999999999998655  899999999   89999999999999999999999999999998 899999999


Q ss_pred             cCCcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchH-HHHhhc--ceEEe
Q 043295           86 YKEETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMI-DIVYKR--IKIQG  161 (223)
Q Consensus        86 ~~~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~--~~~~g  161 (223)
                      +.+. ++.+.+.+.+++ ++|++|||+|+..+..++++++++|+++.+|...+.     ...++.. .++.++  +++.|
T Consensus       197 ~~~~-~~~~~i~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~~~~i~g  270 (333)
T 1wly_A          197 YSTQ-DFAEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHASGV-----ADPIRVVEDLGVRGSLFITRP  270 (333)
T ss_dssp             TTTS-CHHHHHHHHHTTCCEEEEEECSCTTTHHHHHHTEEEEEEEEECCCTTCC-----CCCCCHHHHTTTTTSCEEECC
T ss_pred             CCCH-HHHHHHHHHhCCCCCeEEEECCcHHHHHHHHHhhccCCEEEEEecCCCC-----cCCCChhHhhhhcCCcEEEEE
Confidence            8877 888888888766 899999999998899999999999999999976531     1234555 667788  88888


Q ss_pred             eeccCc--cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          162 FLSTDH--FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       162 ~~~~~~--~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                      +....+  +....+.++++++++.+|.+++.++.+|||+++++||+.+.+++..||+|+++++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  333 (333)
T 1wly_A          271 ALWHYMSNRSEIDEGSKCLFDAVKAGVLHSSVAKTFPLREAAAAHKYMGGRQTIGSIVLLPQA  333 (333)
T ss_dssp             CGGGGSCSHHHHHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCSCCSEEEEETTC
T ss_pred             eehhhccCHHHHHHHHHHHHHHHHCCCcCCCcceEEeHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence            754211  2233567899999999999999999999999999999999998888999998753

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.97  E-value=9.6e-29  Score=196.50  Aligned_cols=205  Identities=34%  Similarity=0.578  Sum_probs=175.3

Q ss_pred             hhhccccchhhHHHHHHHHh--hCC--CEEEEE---CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeec
Q 043295           15 FANGAGTSGFTAYVGFYEIS--QKG--EKVFVS---GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNY   86 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~--~~g--~~vlI~---g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~   86 (223)
                      ++|+++.++.|||+++.+..  ++|  ++|||+   |++|++++|+++..|+ +|+++++++++++.+++++|++.++|+
T Consensus       135 ~~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~  214 (357)
T 2zb4_A          135 FLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINY  214 (357)
T ss_dssp             GGTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEET
T ss_pred             HHHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEec
Confidence            47889999999999996655  889  999999   8999999999999999 999999999999999834999999999


Q ss_pred             CCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCc-------hHHHHhhcceE
Q 043295           87 KEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPN-------MIDIVYKRIKI  159 (223)
Q Consensus        87 ~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~  159 (223)
                      .+. ++.+.+++.+++++|++|||+|+..+..++++++++|+++.+|.......   .....       ...++.+++++
T Consensus       215 ~~~-~~~~~~~~~~~~~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i  290 (357)
T 2zb4_A          215 KKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNK---DVPYPPPLSPAIEAIQKERNITR  290 (357)
T ss_dssp             TTS-CHHHHHHHHCTTCEEEEEESCCHHHHHHHHHTEEEEEEEEECCCGGGTTS---CCCSSCCCCHHHHHHHHHHTCEE
T ss_pred             Cch-HHHHHHHHhcCCCCCEEEECCCHHHHHHHHHHhccCcEEEEECCcccccc---CccccccchhhhhhhhhcceeEE
Confidence            876 88888988887789999999999889999999999999999997654211   11111       24677899999


Q ss_pred             EeeeccCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecCC
Q 043295          160 QGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE  223 (223)
Q Consensus       160 ~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~~  223 (223)
                      .|+....+.....+.++++++++++|.+++.+..+++|+++.+||+.+.+++..||+|++++++
T Consensus       291 ~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~~  354 (357)
T 2zb4_A          291 ERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISEE  354 (357)
T ss_dssp             EECCGGGGGGGHHHHHHHHHHHHHTTCCCCCEEEEECGGGHHHHHHHHHTTCCSBEEEEECCCC
T ss_pred             EEeehhhhhHHHHHHHHHHHHHHHcCCCcCccceecCHHHHHHHHHHHHcCCCCceEEEEEecc
Confidence            9987655444557789999999999999998888899999999999999988889999998653

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.97  E-value=1.4e-29  Score=200.99  Aligned_cols=202  Identities=22%  Similarity=0.323  Sum_probs=172.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|+++.++.|||+++.+..  ++|++|+|+   |++|++++|+++..|++|+++++++++++.++ ++|++.++|+.
T Consensus       137 ~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~g~~~~~~~~  215 (354)
T 2j8z_A          137 LTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE-KLGAAAGFNYK  215 (354)
T ss_dssp             HHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHTCSEEEETT
T ss_pred             HHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCcEEEecC
Confidence            5588899999999999997655  899999999   89999999999999999999999999999998 99999999998


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCch-HHHHhhcceEEeeecc
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNM-IDIVYKRIKIQGFLST  165 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~  165 (223)
                      +. ++.+.+.+.+++ ++|++|||+|+..+..++++++++|+++.+|.....     ...++. ..++.+++++.|+...
T Consensus       216 ~~-~~~~~~~~~~~~~~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~~i~g~~~~  289 (354)
T 2j8z_A          216 KE-DFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGG-----DINGPLFSKLLFKRGSLITSLLR  289 (354)
T ss_dssp             TS-CHHHHHHHHTTTSCEEEEEESSCGGGHHHHHHHEEEEEEEEECCCTTCS-----CCCSCHHHHHHHTTCEEEECCST
T ss_pred             Ch-HHHHHHHHHhcCCCceEEEECCCchHHHHHHHhccCCCEEEEEeccCCC-----ccCCChhHHHHhCCCEEEEEEcc
Confidence            87 888999988877 899999999998889999999999999999976532     224566 6778899999998765


Q ss_pred             Cccch-----HHHHHHHHHHHHHcC---CCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          166 DHFDL-----HQDFISMTCDALRAG---KIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       166 ~~~~~-----~~~~~~~~~~~~~~g---~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      .....     .....+++++++++|   .+++.++.+|||+++.+||+.+.+++..||+|++++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  353 (354)
T 2j8z_A          290 SRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLELP  353 (354)
T ss_dssp             TCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEECC
T ss_pred             cccccccHHHHHHHHHHHHHHHHcCCCccccCccceEEcHHHHHHHHHHHHhCCCCceEEEecC
Confidence            43211     123345688899999   999999999999999999999998888899999875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.97  E-value=3.3e-29  Score=198.45  Aligned_cols=195  Identities=22%  Similarity=0.241  Sum_probs=172.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|++++++.|||+++.+.. +++++|||+   |++|++++|+++.. |++|+++++++++++.++ ++|++.++|+.
T Consensus       146 ~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~-~~g~~~~~~~~  224 (347)
T 1jvb_A          146 AVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAGADYVINAS  224 (347)
T ss_dssp             HHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HHTCSEEEETT
T ss_pred             HHHcccchhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCCEEecCC
Confidence            4578899999999999998766 999999999   48999999999999 999999999999999998 89999999988


Q ss_pred             CcccHHHHHHHhCC-CCccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeecc
Q 043295           88 EETDLKATLKRYFP-DGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        88 ~~~~~~~~i~~~~~-~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  165 (223)
                      +. ++.+.+.+.++ +++|++||++|+. .+..++++++++|+++.+|....     .. .++...++.+++++.|+...
T Consensus       225 ~~-~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-----~~-~~~~~~~~~~~~~i~g~~~~  297 (347)
T 1jvb_A          225 MQ-DPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGA-----DL-HYHAPLITLSEIQFVGSLVG  297 (347)
T ss_dssp             TS-CHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCC-----CC-CCCHHHHHHHTCEEEECCSC
T ss_pred             Cc-cHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCC-----CC-CCCHHHHHhCceEEEEEecc
Confidence            86 88888888887 5899999999985 88999999999999999987541     11 45666778899999998765


Q ss_pred             CccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          166 DHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      .     .+.++++++++++|.+++.++.++||+++++||+.+.+++..||+|+++
T Consensus       298 ~-----~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  347 (347)
T 1jvb_A          298 N-----QSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVLIP  347 (347)
T ss_dssp             C-----HHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             C-----HHHHHHHHHHHHcCCCCceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence            5     5778999999999999999989999999999999999988889999974

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.97  E-value=6.1e-30  Score=203.91  Aligned_cols=204  Identities=17%  Similarity=0.213  Sum_probs=168.9

Q ss_pred             cchhhhhhhccccchhhHHHHHHHHh--hCC-CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH----HHHHHHhh
Q 043295            9 HRSCYVFANGAGTSGFTAYVGFYEIS--QKG-EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK----VAILKEKL   78 (223)
Q Consensus         9 ~~~~~~~aa~l~~~~~ta~~~l~~~~--~~g-~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~----~~~~~~~~   78 (223)
                      +.+ ++++|++++++.|||+++.+..  ++| ++|||+   |++|++++|+|+..|++|++++++.++    .+.++ ++
T Consensus       138 ~~~-~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~-~l  215 (364)
T 1gu7_A          138 GLT-INQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK-EL  215 (364)
T ss_dssp             CCC-HHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHH-HH
T ss_pred             CCC-HHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHH-hc
Confidence            344 4589999999999999999864  899 999999   899999999999999999999866554    57787 99


Q ss_pred             CCCeeeecCC---cccHHHHHHHhC--CC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHH
Q 043295           79 GFDDAFNYKE---ETDLKATLKRYF--PD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDI  152 (223)
Q Consensus        79 g~~~~~~~~~---~~~~~~~i~~~~--~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  152 (223)
                      |+++++|+++   . ++.+.+++.+  ++ ++|+||||+|+.....++++++++|+++.+|.....     ...++...+
T Consensus       216 Ga~~vi~~~~~~~~-~~~~~i~~~t~~~~~g~Dvvid~~G~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~  289 (364)
T 1gu7_A          216 GATQVITEDQNNSR-EFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQ-----PVTIPTSLY  289 (364)
T ss_dssp             TCSEEEEHHHHHCG-GGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSSC-----CEEECHHHH
T ss_pred             CCeEEEecCccchH-HHHHHHHHHhhccCCCceEEEECCCchhHHHHHHHhccCCEEEEecCCCCC-----CcccCHHHH
Confidence            9999999875   4 7888898887  44 899999999997766899999999999999975431     123455667


Q ss_pred             HhhcceEEeeeccCc----cchHHHHHHHHHHHHHcCCCCccceeeeccC---CHHHHHHHhHcCCCcCcEEEEe
Q 043295          153 VYKRIKIQGFLSTDH----FDLHQDFISMTCDALRAGKIQPLEDISNGVD---SIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       153 ~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~---~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      +.+++++.|+....+    +....+.++++++++++|.+++.+..+++++   ++.+||+.+.+++..||+|+++
T Consensus       290 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  364 (364)
T 1gu7_A          290 IFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY  364 (364)
T ss_dssp             HHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             hhcCcEEEEEchhHhcccCHHHHHHHHHHHHHHHHcCCcccccceEEecCchhhHHHHHHHHHhCCCCceEEEeC
Confidence            789999999875432    2223567899999999999998877777664   9999999999988889999975

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.97  E-value=1.5e-29  Score=200.13  Aligned_cols=191  Identities=21%  Similarity=0.194  Sum_probs=149.9

Q ss_pred             hhhhhccccchhhHHHHHHHH-----hhCCCEEEEE--CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHhhCCCee
Q 043295           13 YVFANGAGTSGFTAYVGFYEI-----SQKGEKVFVS--GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEKLGFDDA   83 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~-----~~~g~~vlI~--g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~~g~~~~   83 (223)
                      ++++|++++++.|||+++.+.     .-+|++|||+  |++|++++|+|+..  |++|++++++++++++++ ++|++++
T Consensus       142 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~v  220 (344)
T 2h6e_A          142 PVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFAL-ELGADYV  220 (344)
T ss_dssp             HHHHGGGGTHHHHHHHHHHHHHHHHTTCSSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH-HHTCSEE
T ss_pred             HHHhhhhhhhhHHHHHHHHhhhhcccCCCCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH-HhCCCEE
Confidence            457889999999999999876     1389999999  99999999999999  999999999999999999 8999999


Q ss_pred             eecCC-cccHHHHHHHhCCC-CccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEE
Q 043295           84 FNYKE-ETDLKATLKRYFPD-GIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQ  160 (223)
Q Consensus        84 ~~~~~-~~~~~~~i~~~~~~-~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (223)
                      +|+++ . ++   +.+.+++ ++|+||||+|+. .+..++++++++|+++.+|....      ...++...++.+++++.
T Consensus       221 i~~~~~~-~~---~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~------~~~~~~~~~~~~~~~i~  290 (344)
T 2h6e_A          221 SEMKDAE-SL---INKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGK------RVSLEAFDTAVWNKKLL  290 (344)
T ss_dssp             ECHHHHH-HH---HHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSS------CCCCCHHHHHHTTCEEE
T ss_pred             eccccch-HH---HHHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCC------CcccCHHHHhhCCcEEE
Confidence            98865 3 43   3444545 899999999986 89999999999999999987542      12456677888999999


Q ss_pred             eeeccCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          161 GFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       161 g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      |+....     .+.++++++++++|.+++.+ .++||+++++||+.+.+++..||+|+++
T Consensus       291 g~~~~~-----~~~~~~~~~l~~~g~i~~~i-~~~~l~~~~~A~~~~~~~~~~gKvvl~~  344 (344)
T 2h6e_A          291 GSNYGS-----LNDLEDVVRLSESGKIKPYI-IKVPLDDINKAFTNLDEGRVDGRQVITP  344 (344)
T ss_dssp             ECCSCC-----HHHHHHHHHHHHTTSSCCCE-EEECC----------------CEEEECC
T ss_pred             EEecCC-----HHHHHHHHHHHHcCCCCcce-EEEeHHHHHHHHHHHHcCCCceEEEEeC
Confidence            987654     57789999999999999998 8999999999999999888889999864

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.97  E-value=4.8e-29  Score=200.90  Aligned_cols=199  Identities=18%  Similarity=0.160  Sum_probs=165.9

Q ss_pred             hhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCccc
Q 043295           16 ANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEETD   91 (223)
Q Consensus        16 aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   91 (223)
                      +|+++.++.|||+++.... ++|++|||+  |++|++++|+|+.+|+ +|++++.+++++++++ ++|++ ++++.+.++
T Consensus       164 aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~-~lGa~-~i~~~~~~~  241 (398)
T 1kol_A          164 LTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-AQGFE-IADLSLDTP  241 (398)
T ss_dssp             HGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCE-EEETTSSSC
T ss_pred             ccccccHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH-HcCCc-EEccCCcch
Confidence            7889999999999998655 999999999  9999999999999999 7999999999999999 99997 788876524


Q ss_pred             HHHHHHHhCCC-CccEEEcCCChH----------------HHHHHHHhhccCcEEEEEcccc-ccccc------ccCCCC
Q 043295           92 LKATLKRYFPD-GIDVYFDNVGGE----------------MLEAAVANMNLFGRVAACGVIS-ECADA------SKRAVP  147 (223)
Q Consensus        92 ~~~~i~~~~~~-~~d~vid~~g~~----------------~~~~~~~~l~~~G~~v~~g~~~-~~~~~------~~~~~~  147 (223)
                      +.+.+++.+++ ++|+||||+|++                .+..++++++++|+++.+|... .....      .....+
T Consensus       242 ~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~  321 (398)
T 1kol_A          242 LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSI  321 (398)
T ss_dssp             HHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCC
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccccCCcccccccccccccccc
Confidence            88899998887 999999999974                6889999999999999998752 11100      012345


Q ss_pred             chHHHHhhcceEEeeeccCccchHHHHHHHHHHHHHcCCCC---ccceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          148 NMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQ---PLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~i~---~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                      ++..++.+++++.++...     ..+.++++++++.+|.++   +.++.+|+|+++++||+.+.+++. ||+|++++.
T Consensus       322 ~~~~~~~~~~~~~g~~~~-----~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~~~~~~~~~-gKvvi~~~~  393 (398)
T 1kol_A          322 RFGLGWAKSHSFHTGQTP-----VMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVP-KKFVIDPHK  393 (398)
T ss_dssp             CHHHHHHTTCEEEESSCC-----HHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHHHHHHHTCS-CEEEECTTC
T ss_pred             cHHHHhhcccEEEecccC-----hHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHHHHHhCCCc-eEEEEEeCC
Confidence            566778888988875432     256678899999999999   457889999999999999998887 999998753

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=99.97  E-value=1.8e-29  Score=200.84  Aligned_cols=197  Identities=14%  Similarity=0.144  Sum_probs=168.3

Q ss_pred             hhhhhccccchhhHHHHHHHHh--h-----CCCEEEEE---CchHHHHHHHHHH-cCCeEEEEecCHHHHHHHHHhhCCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--Q-----KGEKVFVS---GAYGHLVGQYAKL-GGCYVVGSAGTNEKVAILKEKLGFD   81 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~-----~g~~vlI~---g~vG~~a~qla~~-~g~~v~~~~~~~~~~~~~~~~~g~~   81 (223)
                      ++++|++++++.|||+++.+..  +     +|++|||+   |++|++++|+|+. .|++|++++++++++++++ ++|++
T Consensus       141 ~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~-~lGad  219 (363)
T 4dvj_A          141 WAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK-SLGAH  219 (363)
T ss_dssp             HHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH-HTTCS
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH-HcCCC
Confidence            5689999999999999997765  5     89999999   9999999999998 5889999999999999999 99999


Q ss_pred             eeeecCCcccHHHHHHHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEE
Q 043295           82 DAFNYKEETDLKATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQ  160 (223)
Q Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (223)
                      .++|+.+  ++.+.+++..++++|+||||+|++ .+..++++++++|+++.+|.+.         .++...+..+++++.
T Consensus       220 ~vi~~~~--~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~---------~~~~~~~~~k~~~i~  288 (363)
T 4dvj_A          220 HVIDHSK--PLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDPS---------AFDIMLFKRKAVSIH  288 (363)
T ss_dssp             EEECTTS--CHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSCCS---------SCCGGGGTTTTCEEE
T ss_pred             EEEeCCC--CHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCCCEEEEECCCC---------ccchHHHhhccceEE
Confidence            9999875  688888888545999999999985 7899999999999999996432         345566777888888


Q ss_pred             eeeccCc-------cchHHHHHHHHHHHHHcCCCCccceeee---ccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          161 GFLSTDH-------FDLHQDFISMTCDALRAGKIQPLEDISN---GVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       161 g~~~~~~-------~~~~~~~~~~~~~~~~~g~i~~~~~~~~---~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      ++.....       .....+.++++++++++|.+++.++.++   +++++.+||+.+.+++..||+|+++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~~  359 (363)
T 4dvj_A          289 HELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGTARGKVVIEGF  359 (363)
T ss_dssp             ECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCCCEEEEECSCSHHHHHHHHHHHHHTCCCSEEEEECS
T ss_pred             EEEeeccccccCcchhhHHHHHHHHHHHHHCCCeeccccceecCCCHHHHHHHHHHHHhCCCceEEEEeCc
Confidence            7654321       1223578899999999999999988766   89999999999999999999999874

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.97  E-value=1.3e-29  Score=202.28  Aligned_cols=195  Identities=17%  Similarity=0.219  Sum_probs=167.7

Q ss_pred             hhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           14 VFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      +++| ++.++.|||+++.... ++|++|||+  |++|++++|+|+..|+ +|++++.+++++++++ ++|++.++|+.+.
T Consensus       160 ~~aa-l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~~  237 (370)
T 4ej6_A          160 VHGA-FCEPLACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAE-EVGATATVDPSAG  237 (370)
T ss_dssp             TGGG-GHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHTCSEEECTTSS
T ss_pred             HHHh-hhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HcCCCEEECCCCc
Confidence            3454 8889999999996666 999999999  9999999999999999 8999999999999999 9999999999887


Q ss_pred             ccHHHHHHH---hCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeecc
Q 043295           90 TDLKATLKR---YFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        90 ~~~~~~i~~---~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  165 (223)
                       ++.+.+++   .+++++|+||||+|+ +.+..++++++++|+++.+|.....    ....++...++.+++++.|+...
T Consensus       238 -~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~----~~~~~~~~~~~~~~~~i~g~~~~  312 (370)
T 4ej6_A          238 -DVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQG----EKVEIEPFDILFRELRVLGSFIN  312 (370)
T ss_dssp             -CHHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTT----CCCCCCHHHHHHTTCEEEECCSC
T ss_pred             -CHHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCC----CccccCHHHHHhCCcEEEEeccC
Confidence             89999988   777799999999995 6899999999999999999976542    23456788899999999998765


Q ss_pred             CccchHHHHHHHHHHHHHcCCCC--ccceeeeccCCHHHHHHHhHcCC-CcCcEEEEec
Q 043295          166 DHFDLHQDFISMTCDALRAGKIQ--PLEDISNGVDSIPSAFTGFFRGD-NIGKKFVRIA  221 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~i~--~~~~~~~~l~~~~~a~~~~~~~~-~~gk~v~~~~  221 (223)
                      .      ..++++++++++|.++  +.++.++||+++.+||+.+.+++ ..+|+|++++
T Consensus       313 ~------~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~~  365 (370)
T 4ej6_A          313 P------FVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSAE  365 (370)
T ss_dssp             T------TCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC--
T ss_pred             h------HHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEccc
Confidence            4      2378899999999995  45788999999999999998877 4578888874

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=99.97  E-value=1.5e-29  Score=206.73  Aligned_cols=197  Identities=21%  Similarity=0.188  Sum_probs=171.1

Q ss_pred             hhhhhccccchhhHHHHHHHH---h-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEI---S-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFN   85 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~---~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~   85 (223)
                      ++++|+++.++.|||+++...   . ++|++|||+   |++|++++|+|+..|++|+++++++++++.++ ++|++.++|
T Consensus       193 ~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~-~lGa~~~i~  271 (447)
T 4a0s_A          193 WEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVR-ALGCDLVIN  271 (447)
T ss_dssp             HHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCCCEEE
T ss_pred             HHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCCEEEe
Confidence            568888999999999999653   3 999999999   89999999999999999999999999999998 999999998


Q ss_pred             cCCccc------------------HHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCC
Q 043295           86 YKEETD------------------LKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVP  147 (223)
Q Consensus        86 ~~~~~~------------------~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  147 (223)
                      +.+. +                  +.+.+++.+++++|++|||+|++.+..++.+++++|+++.+|...+.     ...+
T Consensus       272 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~  345 (447)
T 4a0s_A          272 RAEL-GITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSGY-----LHTF  345 (447)
T ss_dssp             HHHH-TCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHHHHHHHHHHSCTTCEEEESCCTTCS-----EEEE
T ss_pred             cccc-cccccccccccccchhhhHHHHHHHHHhCCCceEEEECCCchHHHHHHHHHhcCCEEEEEecCCCc-----cccc
Confidence            7653 2                  36778888844999999999998899999999999999999976532     1234


Q ss_pred             chHHHHhhcceEEeeeccCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          148 NMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      +...++.++.++.|+....     .+.+.++++++++|.+++.++++|+|+++.+||+.+.+++..||+|+.+.
T Consensus       346 ~~~~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~GKvvv~~~  414 (447)
T 4a0s_A          346 DNRYLWMKLKKIVGSHGAN-----HEEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVGKVAVLCM  414 (447)
T ss_dssp             EHHHHHHTTCEEEECCSCC-----HHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEESS
T ss_pred             CHHHHHhCCCEEEecCCCC-----HHHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            5677788899999988766     45567899999999999999999999999999999999999999999874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.97  E-value=1.8e-29  Score=201.19  Aligned_cols=192  Identities=21%  Similarity=0.219  Sum_probs=163.3

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++++|++++++.|||+++.+.. ++|++|||+  |++|++++|+|+..|++|+++++++++++.++ ++|++.++|+.+.
T Consensus       170 ~~~aa~l~~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~~  248 (369)
T 1uuf_A          170 LAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-ALGADEVVNSRNA  248 (369)
T ss_dssp             HHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHTCSEEEETTCH
T ss_pred             HHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCcEEeccccH
Confidence            5578999999999999999877 999999999  99999999999999999999999999999999 8999999998875


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCcc
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF  168 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  168 (223)
                       ++.+.+   . +++|++|||+|+. .+..++++++++|+++.+|.....     ...++...++.+++++.|+....  
T Consensus       249 -~~~~~~---~-~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~--  316 (369)
T 1uuf_A          249 -DEMAAH---L-KSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATP-----HKSPEVFNLIMKRRAIAGSMIGG--  316 (369)
T ss_dssp             -HHHHTT---T-TCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC------------CHHHHHTTTCEEEECCSCC--
T ss_pred             -HHHHHh---h-cCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCC-----ccccCHHHHHhCCcEEEEeecCC--
Confidence             443333   2 4799999999975 688999999999999999876431     11355667788999999987655  


Q ss_pred             chHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          169 DLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       169 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                         .+.++++++++++|.+++.+. ++||+++++||+.+.+++..||+|++++
T Consensus       317 ---~~~~~~~~~l~~~g~i~~~i~-~~~l~~~~~A~~~~~~~~~~gKvvi~~~  365 (369)
T 1uuf_A          317 ---IPETQEMLDFCAEHGIVADIE-MIRADQINEAYERMLRGDVKYRFVIDNR  365 (369)
T ss_dssp             ---HHHHHHHHHHHHHHTCCCCEE-EECGGGHHHHHHHHHTTCSSSEEEEEGG
T ss_pred             ---HHHHHHHHHHHHhCCCCcceE-EEcHHHHHHHHHHHHcCCCceEEEEecC
Confidence               567888999999999998864 6999999999999999888899999875

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.97  E-value=1.1e-29  Score=203.35  Aligned_cols=193  Identities=19%  Similarity=0.206  Sum_probs=167.9

Q ss_pred             hhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC---
Q 043295           16 ANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK---   87 (223)
Q Consensus        16 aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~---   87 (223)
                      .|++..++.|||+++....  ++|++|||+  |++|++++|+|+..|+ +|+++++++++++.++ ++|+++++|++   
T Consensus       173 ~Aa~~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~~~~  251 (380)
T 1vj0_A          173 LAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EIGADLTLNRRETS  251 (380)
T ss_dssp             HHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HTTCSEEEETTTSC
T ss_pred             hHhhhcHHHHHHHHHHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-HcCCcEEEeccccC
Confidence            4555559999999996654  689999999  9999999999999994 9999999999999999 99999999987   


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccc-cccccccCCCCchHH-HHhhcceEEeee
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVIS-ECADASKRAVPNMID-IVYKRIKIQGFL  163 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~-~~~~~~~~~g~~  163 (223)
                      +. ++.+.+++.+++ ++|+||||+|+ +.+..++++++++|+++.+|... ..     ...+++.. ++.+++++.|+.
T Consensus       252 ~~-~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~-----~~~~~~~~~~~~~~~~i~g~~  325 (380)
T 1vj0_A          252 VE-ERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQD-----PVPFKVYEWLVLKNATFKGIW  325 (380)
T ss_dssp             HH-HHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCC-----CEEECHHHHTTTTTCEEEECC
T ss_pred             cc-hHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCC-----CeeEchHHHHHhCCeEEEEee
Confidence            55 788899999988 99999999997 68999999999999999999765 21     12345556 778999999987


Q ss_pred             ccCccchHHHHHHHHHHHHHc--CCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          164 STDHFDLHQDFISMTCDALRA--GKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~--g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      ...     .+.++++++++++  |.+++.++.+|+|+++.+||+.+.+++.. |+|++++
T Consensus       326 ~~~-----~~~~~~~~~l~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~-Kvvl~~~  379 (380)
T 1vj0_A          326 VSD-----TSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESREAL-KVILYPE  379 (380)
T ss_dssp             CCC-----HHHHHHHHHHHHTCHHHHGGGCCEEEEGGGHHHHHHHHHHTSCS-CEEEECC
T ss_pred             cCC-----HHHHHHHHHHHHhhcCCeeeEEEEEEeHHHHHHHHHHHhcCCCc-eEEEEeC
Confidence            654     6778999999999  99988888999999999999999988877 9999875

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.97  E-value=2.3e-29  Score=200.54  Aligned_cols=195  Identities=15%  Similarity=0.128  Sum_probs=164.4

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecC-
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYK-   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~-   87 (223)
                      +++||.+ .++.|||+++.... ++|++|||+  |++|++++|+|+..|++ |++++.+++++++++ ++ ++.++++. 
T Consensus       156 ~~~aa~~-~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-~~~~~~~~~  232 (363)
T 3m6i_A          156 YENGAML-EPLSVALAGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAK-EI-CPEVVTHKV  232 (363)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-HH-CTTCEEEEC
T ss_pred             HHHHHhh-hHHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-chhcccccc
Confidence            4566655 68899999996666 999999999  99999999999999996 999999999999999 88 76666654 


Q ss_pred             ---CcccHHHHHHHhCCC-CccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEee
Q 043295           88 ---EETDLKATLKRYFPD-GIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGF  162 (223)
Q Consensus        88 ---~~~~~~~~i~~~~~~-~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  162 (223)
                         ...++.+.+++.+++ ++|++|||+|++ .+..++++++++|+++.+|....      ...++...++.+++++.|+
T Consensus       233 ~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i~g~  306 (363)
T 3m6i_A          233 ERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKN------EIQIPFMRASVREVDLQFQ  306 (363)
T ss_dssp             CSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCCS------CCCCCHHHHHHHTCEEEEC
T ss_pred             cccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEccCCC------CccccHHHHHhcCcEEEEc
Confidence               112788899999987 999999999986 78999999999999999997543      2245677888999999987


Q ss_pred             eccCccchHHHHHHHHHHHHHcCCC--CccceeeeccCCHHHHHHHhHcC-CCcCcEEEEecC
Q 043295          163 LSTDHFDLHQDFISMTCDALRAGKI--QPLEDISNGVDSIPSAFTGFFRG-DNIGKKFVRIAG  222 (223)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~g~i--~~~~~~~~~l~~~~~a~~~~~~~-~~~gk~v~~~~~  222 (223)
                      ...      .+.++++++++++|.+  ++.++.+|||+++++||+.+.++ ...+|+|+++++
T Consensus       307 ~~~------~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  363 (363)
T 3m6i_A          307 YRY------CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSLE  363 (363)
T ss_dssp             CSC------SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEECC-
T ss_pred             cCC------HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEecCC
Confidence            654      2447789999999999  45577899999999999999998 577899999864

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.97  E-value=7.7e-29  Score=196.91  Aligned_cols=195  Identities=16%  Similarity=0.167  Sum_probs=164.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC-
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK-   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~-   87 (223)
                      ++++|. ..++.|||+++.... ++|++|||+  |++|++++|+|+..|+ +|++++++++++++++ ++|+++++|++ 
T Consensus       148 ~~~aa~-~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~  225 (356)
T 1pl8_A          148 FEEGAL-IEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EIGADLVLQISK  225 (356)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCSEEEECSS
T ss_pred             HHHHHh-hchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEEcCcc
Confidence            345554 468899999996666 999999999  9999999999999999 9999999999999999 99999999987 


Q ss_pred             --CcccHHHHHHHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           88 --EETDLKATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        88 --~~~~~~~~i~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                        +. ++.+.+++.+++++|+|||++|+. .+..++++++++|+++.+|....      ...++...++.+++++.|+..
T Consensus       226 ~~~~-~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i~g~~~  298 (356)
T 1pl8_A          226 ESPQ-EIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSE------MTTVPLLHAAIREVDIKGVFR  298 (356)
T ss_dssp             CCHH-HHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCS------CCCCCHHHHHHTTCEEEECCS
T ss_pred             cccc-hHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEecCCC------CCccCHHHHHhcceEEEEecc
Confidence              34 678888887766899999999974 78999999999999999986432      234566778889999998764


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCC--ccceeeeccCCHHHHHHHhHcCCCcCcEEEEecCC
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQ--PLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE  223 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~--~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~~  223 (223)
                      ..      +.++++++++++|.++  +.++.+|||+++.+||+.+.++ ..||+|++++++
T Consensus       299 ~~------~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~-~~gKvvi~~~~~  352 (356)
T 1pl8_A          299 YC------NTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKG-LGLKIMLKCDPS  352 (356)
T ss_dssp             CS------SCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTT-CCSEEEEECCTT
T ss_pred             cH------HHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCC-CceEEEEeCCCC
Confidence            32      3478899999999875  5677899999999999999988 789999998653

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.97  E-value=1.1e-29  Score=201.33  Aligned_cols=190  Identities=18%  Similarity=0.140  Sum_probs=164.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++++|++++++.|||+++.+.. ++|++|||+  |++|++++|+|+..|++|++++++++++++++ ++|++.++ .+..
T Consensus       152 ~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~v~-~~~~  229 (348)
T 3two_A          152 LEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDAL-SMGVKHFY-TDPK  229 (348)
T ss_dssp             HHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHH-HTTCSEEE-SSGG
T ss_pred             HHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-hcCCCeec-CCHH
Confidence            5689999999999999998877 999999999  99999999999999999999999999999999 99999988 3221


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHH-hhcceEEeeeccCc
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIV-YKRIKIQGFLSTDH  167 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~  167 (223)
                       .+    .    .++|++|||+|++ .+..++++++++|+++.+|.....    ....++...++ .+++++.|+.... 
T Consensus       230 -~~----~----~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~~~~i~g~~~~~-  295 (348)
T 3two_A          230 -QC----K----EELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVE----VAPVLSVFDFIHLGNRKVYGSLIGG-  295 (348)
T ss_dssp             -GC----C----SCEEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGG----GCCEEEHHHHHHTCSCEEEECCSCC-
T ss_pred             -HH----h----cCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCC----CcccCCHHHHHhhCCeEEEEEecCC-
Confidence             11    1    1799999999986 899999999999999999976521    11125666777 8999999988776 


Q ss_pred             cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecCC
Q 043295          168 FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE  223 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~~  223 (223)
                          .+.++++++++++|.+++.+ .++||+++++||+.+.+++..||+|++++++
T Consensus       296 ----~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvVi~~~~~  346 (348)
T 3two_A          296 ----IKETQEMVDFSIKHNIYPEI-DLILGKDIDTAYHNLTHGKAKFRYVIDMKKS  346 (348)
T ss_dssp             ----HHHHHHHHHHHHHTTCCCCE-EEECGGGHHHHHHHHHTTCCCSEEEEEGGGC
T ss_pred             ----HHHHHHHHHHHHhCCCCceE-EEEEHHHHHHHHHHHHcCCCceEEEEecCCc
Confidence                56788999999999999965 6899999999999999999999999998753

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.97  E-value=1.2e-29  Score=204.41  Aligned_cols=198  Identities=17%  Similarity=0.249  Sum_probs=166.0

Q ss_pred             hhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCccc
Q 043295           16 ANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEETD   91 (223)
Q Consensus        16 aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   91 (223)
                      +|+++.++.|||+++.... ++|++|||+  |++|++++|+|+..|+ +|+++++++++++.++ ++|++ ++|+.+. +
T Consensus       164 aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~-~i~~~~~-~  240 (398)
T 2dph_A          164 LTLISDILPTGFHGCVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS-DAGFE-TIDLRNS-A  240 (398)
T ss_dssp             HTTTTTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-TTTCE-EEETTSS-S
T ss_pred             hhhhcCHHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcCCc-EEcCCCc-c
Confidence            8899999999999996555 999999999  9999999999999999 9999999999999999 99995 8898876 6


Q ss_pred             H-HHHHHHhCCC-CccEEEcCCChH---------------HHHHHHHhhccCcEEEEEccccccccc-------ccCCCC
Q 043295           92 L-KATLKRYFPD-GIDVYFDNVGGE---------------MLEAAVANMNLFGRVAACGVISECADA-------SKRAVP  147 (223)
Q Consensus        92 ~-~~~i~~~~~~-~~d~vid~~g~~---------------~~~~~~~~l~~~G~~v~~g~~~~~~~~-------~~~~~~  147 (223)
                      + .+.+++.+++ ++|+||||+|+.               .+..++++++++|+++.+|........       .....+
T Consensus       241 ~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~~~~~~~~~~~~~~~~~~~~  320 (398)
T 2dph_A          241 PLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDPVNKDAGSGRLHL  320 (398)
T ss_dssp             CHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCCCSCCSSCSSHHHHTTEEEE
T ss_pred             hHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccccccccccccccccCCcccc
Confidence            5 8889998888 999999999974               688999999999999999875210000       011234


Q ss_pred             chHHHHhhcceEEeeeccCccchHHHHHHHHHHHHHcCCCC--c--cceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          148 NMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQ--P--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       148 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~i~--~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                      +...++.+++++.|+....     .+.++++++++++|.++  +  .++.+++|+++.+||+.+.+++. ||+|++++.
T Consensus       321 ~~~~~~~k~~~i~g~~~~~-----~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-gKvvv~~~~  393 (398)
T 2dph_A          321 DFGKMWTKSIRIMTGMAPV-----TNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSP-AKFVIDPHG  393 (398)
T ss_dssp             EHHHHHHTTCEEECSSCCG-----GGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHHHHHHTTCS-CEEEECTTS
T ss_pred             cHHHHhhcCCEEEEeccCc-----HHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHHHHHhcCCc-eEEEEecCc
Confidence            5567788999988765433     45578899999999999  7  46789999999999999998888 999998753

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=200.82  Aligned_cols=206  Identities=21%  Similarity=0.291  Sum_probs=162.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCCCeeeec
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGFDDAFNY   86 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~~~~~~~   86 (223)
                      ++++|++++++.|||+++.+..  ++|++|||+   |++|++++|+|+..| ++|++++ ++++.+.++  +|+++++| 
T Consensus       117 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~--~ga~~~~~-  192 (349)
T 4a27_A          117 FSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK--DSVTHLFD-  192 (349)
T ss_dssp             HHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG--GGSSEEEE-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH--cCCcEEEc-
Confidence            4588999999999999997766  999999999   899999999999985 5999988 667777765  89999999 


Q ss_pred             CCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccc-----------cCCCCchHHHHhh
Q 043295           87 KEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADAS-----------KRAVPNMIDIVYK  155 (223)
Q Consensus        87 ~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-----------~~~~~~~~~~~~~  155 (223)
                      .+. ++.+.+++.+++++|++|||+|++.+..++++++++|+++.+|.........           .....+...++.+
T Consensus       193 ~~~-~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  271 (349)
T 4a27_A          193 RNA-DYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEE  271 (349)
T ss_dssp             TTS-CHHHHHHHHCTTCEEEEEEECC-------CTTEEEEEEEEEEC-------------------------CHHHHHHH
T ss_pred             CCc-cHHHHHHHhcCCCceEEEECCCchhHHHHHHHhhcCCEEEEECCCcccccccccccccccccccccccCHHHHhhc
Confidence            555 8999999998779999999999988899999999999999999754221100           0122456677889


Q ss_pred             cceEEeeeccCc------cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecCC
Q 043295          156 RIKIQGFLSTDH------FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE  223 (223)
Q Consensus       156 ~~~~~g~~~~~~------~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~~  223 (223)
                      +.++.|+....+      .....+.++++++++++|.+++.++.+++|+++++||+.+.+++..||+|++++++
T Consensus       272 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~~~~  345 (349)
T 4a27_A          272 NKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVKEAMQRIHDRGNIGKLILDVEKT  345 (349)
T ss_dssp             TCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSCCCCEEEEECGGGHHHHHHHHHTTCCSSEEEEETTCC
T ss_pred             CceEEEEeehheeccccchHHHHHHHHHHHHHHHCCCccccccceECHHHHHHHHHHHHhCCCCceEEEecCCC
Confidence            999999886443      12347789999999999999999999999999999999999999999999998753

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=99.97  E-value=2.1e-29  Score=197.49  Aligned_cols=189  Identities=23%  Similarity=0.288  Sum_probs=160.2

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++|++++++.|||+++.... ++|++|+|+   |++|++++|+|+..|++|++++ ++++++.++ ++|+++++|+++
T Consensus       128 ~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~-~lGa~~~i~~~~  205 (321)
T 3tqh_A          128 FLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLK-ALGAEQCINYHE  205 (321)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHH-HHTCSEEEETTT
T ss_pred             HHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHH-HcCCCEEEeCCC
Confidence            5689999999999999995555 999999999   9999999999999999999998 566789998 999999999988


Q ss_pred             ccc-HHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETD-LKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~-~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      . + +.+.+     +++|++|||+|++.+..++++++++|+++.+|.....        ........+++++.++.... 
T Consensus       206 ~-~~~~~~~-----~g~D~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~-  270 (321)
T 3tqh_A          206 E-DFLLAIS-----TPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTITAG--------RVIEVAKQKHRRAFGLLKQF-  270 (321)
T ss_dssp             S-CHHHHCC-----SCEEEEEESSCHHHHHHHGGGEEEEEEEEECCSTTHH--------HHHHHHHHTTCEEECCCCCC-
T ss_pred             c-chhhhhc-----cCCCEEEECCCcHHHHHHHHhccCCCEEEEeCCCCch--------hhhhhhhhcceEEEEEecCC-
Confidence            6 5 55443     3799999999998889999999999999999854321        11234567788888754322 


Q ss_pred             cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          168 FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                         ..+.++++++++.+|.+++.++.+++|+++.+||+.+.+++..||+|++++
T Consensus       271 ---~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~~  321 (321)
T 3tqh_A          271 ---NIEELHYLGKLVSEDKLRIEISRIFQLSEAVTAHELLETGHVRGKLVFKVR  321 (321)
T ss_dssp             ---CHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             ---CHHHHHHHHHHHHCCCcccccccEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence               156789999999999999999999999999999999999999999999873

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.97  E-value=8.9e-29  Score=197.94  Aligned_cols=196  Identities=19%  Similarity=0.201  Sum_probs=166.4

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|++++++.|||+++.+..  ++|++|||+  |++|++++|+|+..|+ +|+++++++++++.++ ++|+++++|+.
T Consensus       170 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~  248 (376)
T 1e3i_A          170 LERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-ALGATDCLNPR  248 (376)
T ss_dssp             HHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCSEEECGG
T ss_pred             HHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCcEEEccc
Confidence            5688999999999999987655  899999999  9999999999999999 8999999999999999 99999999987


Q ss_pred             C--cccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCchHHHHhhcceEEeee
Q 043295           88 E--ETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFL  163 (223)
Q Consensus        88 ~--~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  163 (223)
                      +  . ++.+.+++.+++++|+||||+|+ +.+..++++++++ |+++.+|....      ...++...++.++ ++.|+.
T Consensus       249 ~~~~-~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~~------~~~~~~~~~~~~~-~i~g~~  320 (376)
T 1e3i_A          249 ELDK-PVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVD------EMTIPTVDVILGR-SINGTF  320 (376)
T ss_dssp             GCSS-CHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSS------EEEEEHHHHHTTC-EEEECS
T ss_pred             cccc-hHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCCC------ccccCHHHhhccC-eEEEEe
Confidence            5  3 78888988887799999999997 6789999999999 99999997321      1234556677777 888876


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          164 STDHFDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ...+.  ..+.++++++++.+|.+++  .++.++||+++++||+.+.+++ .+|+|+++
T Consensus       321 ~~~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~-~~Kvvi~~  376 (376)
T 1e3i_A          321 FGGWK--SVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGK-SIRTILTF  376 (376)
T ss_dssp             GGGCC--HHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTC-CSEEEEEC
T ss_pred             cCCCC--cHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCC-cceEEEeC
Confidence            54321  2567899999999999984  5678899999999999998877 47999875

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.97  E-value=3.9e-29  Score=196.55  Aligned_cols=201  Identities=19%  Similarity=0.189  Sum_probs=171.8

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|+++.++.|||+++.+..  +++++|+|+   |++|++++|+++..|++|+++++++++.+.++ ++|++.++|+.
T Consensus       115 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~-~~g~~~~~~~~  193 (327)
T 1qor_A          115 FEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KAGAWQVINYR  193 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSEEEETT
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEECC
Confidence            5588899999999999998654  899999999   89999999999999999999999999999999 89999999988


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhh-cceEEeeecc
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYK-RIKIQGFLST  165 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~  165 (223)
                      +. ++.+.+.+.+++ ++|++|||+|++.+..++++++++|+++.+|.....     ...++...++.+ .+++.++...
T Consensus       194 ~~-~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  267 (327)
T 1qor_A          194 EE-DLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGA-----VTGVNLGILNQKGSLYVTRPSLQ  267 (327)
T ss_dssp             TS-CHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCC-----CCCBCTHHHHHTTSCEEECCCHH
T ss_pred             Cc-cHHHHHHHHhCCCCceEEEECCchHHHHHHHHHhcCCCEEEEEecCCCC-----CCccCHHHHhhccceEEEccchh
Confidence            77 888899888876 899999999988899999999999999999976532     123455666667 7777765432


Q ss_pred             Cc---cchHHHHHHHHHHHHHcCCCCccce--eeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          166 DH---FDLHQDFISMTCDALRAGKIQPLED--ISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       166 ~~---~~~~~~~~~~~~~~~~~g~i~~~~~--~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      .+   +....+.++++++++++|.+++.++  .+++|+++.+||+.+.+++..||+|+++
T Consensus       268 ~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  327 (327)
T 1qor_A          268 GYITTREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP  327 (327)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHTTSSCCCCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred             hhcCCHHHHHHHHHHHHHHHHCCCcccccccCcEEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            22   2224567899999999999999888  8999999999999999988889999874

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.97  E-value=1.2e-28  Score=197.02  Aligned_cols=199  Identities=19%  Similarity=0.221  Sum_probs=166.8

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|++++++.|||+++.+..  ++|++|||+  |++|++++|+|+..|+ +|+++++++++++.++ ++|+++++|+.
T Consensus       165 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~  243 (373)
T 2fzw_A          165 LDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EFGATECINPQ  243 (373)
T ss_dssp             HHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HHTCSEEECGG
T ss_pred             HHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcCCceEeccc
Confidence            5688999999999999987655  899999999  9999999999999999 8999999999999999 99999999987


Q ss_pred             C-cccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           88 E-ETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        88 ~-~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      + .+++.+.+++.+++++|++|||+|+ +.+..++++++++ |+++.+|.....    ....++...++.++ ++.|+..
T Consensus       244 ~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~-~i~g~~~  318 (373)
T 2fzw_A          244 DFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASG----EEIATRPFQLVTGR-TWKGTAF  318 (373)
T ss_dssp             GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTT----CCEEECTHHHHTTC-EEEECSG
T ss_pred             cccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCC----ceeeeCHHHHhcCC-EEEEecc
Confidence            5 1278889999887799999999997 6889999999999 999999975431    11234455666677 8888765


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCC--ccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQ--PLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~--~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ..+.  ..+.++++++++++|.++  +.++.++||+++.+||+.+.+++. +|+|+++
T Consensus       319 ~~~~--~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  373 (373)
T 2fzw_A          319 GGWK--SVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKS-IRTVVKI  373 (373)
T ss_dssp             GGCC--HHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCC-SEEEEEC
T ss_pred             CCCC--cHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCc-ceEEEeC
Confidence            4321  256789999999999998  456788999999999999988775 6999874

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.97  E-value=8.6e-29  Score=197.83  Aligned_cols=196  Identities=18%  Similarity=0.178  Sum_probs=164.3

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++ +|++++++.|||+++.+..  ++|++|||+  |++|++++|+|+..|+ +|++++++++++++++ ++|+++++|+.
T Consensus       167 ~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~  244 (373)
T 1p0f_A          167 LE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-ELGATECLNPK  244 (373)
T ss_dssp             GG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HTTCSEEECGG
T ss_pred             hh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-HcCCcEEEecc
Confidence            45 8888899999999987655  899999999  9999999999999999 8999999999999999 99999999987


Q ss_pred             C--cccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCchHHHHhhcceEEeee
Q 043295           88 E--ETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFL  163 (223)
Q Consensus        88 ~--~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  163 (223)
                      +  . ++.+.+++.+++++|+||||+|+ +.+..++++++++ |+++.+|.....    ....++...++.++ ++.|+.
T Consensus       245 ~~~~-~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~-~i~g~~  318 (373)
T 1p0f_A          245 DYDK-PIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPN----ERLPLDPLLLLTGR-SLKGSV  318 (373)
T ss_dssp             GCSS-CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTT----CCEEECTHHHHTTC-EEEECS
T ss_pred             cccc-hHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCC----CccccCHHHhccCc-eEEeec
Confidence            5  3 78899999887799999999997 6889999999999 999999975431    11234445566677 888876


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          164 STDHFDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ...+.   .+.++++++++++|.+++  .++.++||+++.+||+.+.+++. +|+|+++
T Consensus       319 ~~~~~---~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  373 (373)
T 1p0f_A          319 FGGFK---GEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQG-VRSIMIY  373 (373)
T ss_dssp             GGGCC---GGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSC-SEEEEEC
T ss_pred             cCCcC---HHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCc-ceEEEeC
Confidence            54321   145788999999999984  56788999999999999987764 7999874

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.97  E-value=2.7e-28  Score=192.19  Aligned_cols=203  Identities=43%  Similarity=0.748  Sum_probs=171.4

Q ss_pred             hhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC-c
Q 043295           16 ANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE-E   89 (223)
Q Consensus        16 aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~-~   89 (223)
                      +|++++++.|||+++.+..  ++|++|+|+   |++|++++|+++..|++|+++++++++.+.++ ++|++.++|+.+ .
T Consensus       123 ~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~-~~g~~~~~d~~~~~  201 (333)
T 1v3u_A          123 LGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVN  201 (333)
T ss_dssp             GTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTSCS
T ss_pred             HHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCCcEEEecCCHH
Confidence            6899999999999997665  899999999   79999999999999999999999999999997 899999999887 5


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccc-cCCCCchHHHHhhcceEEeeeccCc-
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADAS-KRAVPNMIDIVYKRIKIQGFLSTDH-  167 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~-  167 (223)
                       ++.+.+.+.+++++|++||++|++.+..++++++++|+++.+|......... .....+...++.+++++.|+....+ 
T Consensus       202 -~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  280 (333)
T 1v3u_A          202 -SLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQ  280 (333)
T ss_dssp             -CHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCGGGCC
T ss_pred             -HHHHHHHHHhCCCCeEEEECCChHHHHHHHHHHhcCCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEehhhcc
Confidence             8888888887778999999999988999999999999999999765321000 0111255678889999999876543 


Q ss_pred             cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          168 FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      +....+.++++++++++|.+++.+..+++|+++.+||+.+.+++..||+|+++
T Consensus       281 ~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  333 (333)
T 1v3u_A          281 GDVREKALRDLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGANLGKAVVTA  333 (333)
T ss_dssp             THHHHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             hHHHHHHHHHHHHHHHCCCccCccccccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            23456788999999999999998877889999999999999988889999974

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.97  E-value=1.7e-29  Score=203.76  Aligned_cols=192  Identities=15%  Similarity=0.199  Sum_probs=166.5

Q ss_pred             hhhhhccccchhhHHHHHHHH--h-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeec
Q 043295           13 YVFANGAGTSGFTAYVGFYEI--S-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNY   86 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~--~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~   86 (223)
                      +.++|+++.++.|||+++...  . ++|++|||+  |++|++++|+|+..|+ +|++++.+++++++++ ++|+++++|+
T Consensus       187 ~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~  265 (404)
T 3ip1_A          187 LFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK-ELGADHVIDP  265 (404)
T ss_dssp             HHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHTCSEEECT
T ss_pred             chhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HcCCCEEEcC
Confidence            456899999999999999654  3 899999999  9999999999999999 9999999999999999 9999999999


Q ss_pred             CCcccHHHHHHHhCCC-CccEEEcCCChH--HHHHHHHhh----ccCcEEEEEcccccccccccCCCCchHHHHhhcceE
Q 043295           87 KEETDLKATLKRYFPD-GIDVYFDNVGGE--MLEAAVANM----NLFGRVAACGVISECADASKRAVPNMIDIVYKRIKI  159 (223)
Q Consensus        87 ~~~~~~~~~i~~~~~~-~~d~vid~~g~~--~~~~~~~~l----~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (223)
                      .+. ++.+.+++.+++ ++|+||||+|++  .+..++.++    +++|+++.+|.....      ..++...++.+++++
T Consensus       266 ~~~-~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~------~~~~~~~~~~~~~~i  338 (404)
T 3ip1_A          266 TKE-NFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAK------IPLTGEVFQVRRAQI  338 (404)
T ss_dssp             TTS-CHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSC------EEECHHHHHHTTCEE
T ss_pred             CCC-CHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCC------CcccHHHHhccceEE
Confidence            887 899999999988 999999999986  677777777    999999999976532      255678888999999


Q ss_pred             EeeeccCccchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          160 QGFLSTDHFDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       160 ~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      .|+.....    .+.++++++++++| +++  .++.+++|+++.+||+.+.    .||+|++++
T Consensus       339 ~g~~~~~~----~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~----~GKvvl~~~  393 (404)
T 3ip1_A          339 VGSQGHSG----HGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQ----TDKSLVKVT  393 (404)
T ss_dssp             EECCCCCS----TTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTT----TCTTCSCEE
T ss_pred             EEecCCCc----hHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHh----CCcEEEecC
Confidence            99875331    34578899999999 764  5778999999999999987    589998875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.97  E-value=2.1e-28  Score=195.60  Aligned_cols=199  Identities=18%  Similarity=0.201  Sum_probs=166.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|++++++.|||+++.+..  ++|++|||+  |++|++++|+|+..|+ +|+++++++++++.++ ++|+++++|+.
T Consensus       166 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~  244 (374)
T 2jhf_A          166 LEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK-EVGATECVNPQ  244 (374)
T ss_dssp             HHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCSEEECGG
T ss_pred             HHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCceEeccc
Confidence            5688999999999999997655  899999999  9999999999999999 8999999999999999 99999999987


Q ss_pred             C-cccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           88 E-ETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        88 ~-~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      + .+++.+.+++.+++++|++|||+|+ +.+..++++++++ |+++.+|.....    ....++...++.++ ++.|+..
T Consensus       245 ~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~----~~~~~~~~~~~~~~-~i~g~~~  319 (374)
T 2jhf_A          245 DYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS----QNLSMNPMLLLSGR-TWKGAIF  319 (374)
T ss_dssp             GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTT----CCEEECTHHHHTTC-EEEECSG
T ss_pred             ccchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCC----CccccCHHHHhcCC-eEEEecc
Confidence            5 1268888998887799999999997 6889999999999 999999975431    11234455666777 8888765


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ..+.  ..+.++++++++++|.+++  .++.+|||+++.+||+.+.+++. +|+|+++
T Consensus       320 ~~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~Kvvi~~  374 (374)
T 2jhf_A          320 GGFK--SKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGES-IRTILTF  374 (374)
T ss_dssp             GGCC--HHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             CCCC--hHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCc-ceEEEeC
Confidence            4321  2467899999999999874  56788999999999999988774 6999875

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.97  E-value=5.3e-29  Score=198.80  Aligned_cols=207  Identities=17%  Similarity=0.188  Sum_probs=166.8

Q ss_pred             hhhhhccccchhhHHHHHHHH-h-------------hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHH
Q 043295           13 YVFANGAGTSGFTAYVGFYEI-S-------------QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK   75 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~-~-------------~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~   75 (223)
                      ++++|.+++++.|||+++.+. .             ++|++|||+   |++|++++|+|+..|++|++++ +++++++++
T Consensus       127 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~  205 (371)
T 3gqv_A          127 FEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAK  205 (371)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHH
Confidence            568898999999999999776 2             678999999   6899999999999999999997 789999999


Q ss_pred             HhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhh-ccCcEEEEEccccccccccc---CCCCchH
Q 043295           76 EKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANM-NLFGRVAACGVISECADASK---RAVPNMI  150 (223)
Q Consensus        76 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~---~~~~~~~  150 (223)
                       ++|+++++|+++. ++.+.+++.+++++|++|||+|+ ..+..+++++ +++|+++.+|..........   .......
T Consensus       206 -~lGa~~vi~~~~~-~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~  283 (371)
T 3gqv_A          206 -SRGAEEVFDYRAP-NLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGP  283 (371)
T ss_dssp             -HTTCSEEEETTST-THHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEESSCCCC---CCSCEEEEECCGG
T ss_pred             -HcCCcEEEECCCc-hHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCCCEEEEEecCccccccccccceeeeeee
Confidence             9999999999987 89999999998899999999998 6789999999 59999999996543110000   0111223


Q ss_pred             HHHhhcceEEeeeccCc----cchHHHHHHHHHHHHHcCCCCccceee--eccCCHHHHHHHhHcCCCcC-cEEEEecC
Q 043295          151 DIVYKRIKIQGFLSTDH----FDLHQDFISMTCDALRAGKIQPLEDIS--NGVDSIPSAFTGFFRGDNIG-KKFVRIAG  222 (223)
Q Consensus       151 ~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~g~i~~~~~~~--~~l~~~~~a~~~~~~~~~~g-k~v~~~~~  222 (223)
                      .++.+++++.|+.....    .....++++++++++++|++++....+  ++|+++++||+.+.+++..| |+|+++++
T Consensus       284 ~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~~~Gkkvvv~~~~  362 (371)
T 3gqv_A          284 TIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLVVRLEG  362 (371)
T ss_dssp             GGGTSCBSCSTTTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTCCSSCEEEEEECC
T ss_pred             eeccccccccccccccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCCCceEEEEEEeCC
Confidence            56778888887754432    123445667899999999999886554  79999999999999999887 67777654

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=99.97  E-value=2.6e-29  Score=199.71  Aligned_cols=200  Identities=20%  Similarity=0.288  Sum_probs=164.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH----HHHHHHHHhhCCCee
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN----EKVAILKEKLGFDDA   83 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~----~~~~~~~~~~g~~~~   83 (223)
                      ++++|++++++.|||+++.+..  ++|++|||+   |++|++++|+||..|+++++++++.    ++.+.++ ++|++++
T Consensus       142 ~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~-~lGa~~v  220 (357)
T 1zsy_A          142 LQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK-SLGAEHV  220 (357)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH-HTTCSEE
T ss_pred             HHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH-hcCCcEE
Confidence            5689999999999999998765  899999999   8999999999999999988888553    2567888 9999999


Q ss_pred             eecCCcccHHHHHHHhCCC--CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEe
Q 043295           84 FNYKEETDLKATLKRYFPD--GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQG  161 (223)
Q Consensus        84 ~~~~~~~~~~~~i~~~~~~--~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g  161 (223)
                      +|+.+.  ..+.+.+.+++  ++|+||||+|++....++++++++|+++.+|.....     ...++...++.+++++.|
T Consensus       221 i~~~~~--~~~~~~~~~~~~~~~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~i~g  293 (357)
T 1zsy_A          221 ITEEEL--RRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQ-----PVVASVSLLIFKDLKLRG  293 (357)
T ss_dssp             EEHHHH--HSGGGGGTTSSSCCCSEEEESSCHHHHHHHHTTSCTTCEEEECCCCTTC-----CBCCCHHHHHHSCCEEEE
T ss_pred             EecCcc--hHHHHHHHHhCCCCceEEEECCCcHHHHHHHHhhCCCCEEEEEecCCCC-----CCCCCHHHHHhcCceEEE
Confidence            987542  22445566654  599999999997777899999999999999864321     224556677789999999


Q ss_pred             eeccCc-----cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          162 FLSTDH-----FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       162 ~~~~~~-----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      +....+     +...++.++++++++++|.+++.+..++||+++.+||+.+.+++..||+|+++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  357 (357)
T 1zsy_A          294 FWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPFISSKQILTM  357 (357)
T ss_dssp             CCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred             EEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCccceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence            876432     22245678999999999999998888999999999999999888889999974

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.97  E-value=1.6e-28  Score=196.39  Aligned_cols=198  Identities=15%  Similarity=0.134  Sum_probs=166.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|++++++.|||+++.+..  ++|++|||+  |++|++++|+|+..|+ +|+++++++++++.++ ++|+++++|+.
T Consensus       167 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~lGa~~vi~~~  245 (374)
T 1cdo_A          167 LDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VFGATDFVNPN  245 (374)
T ss_dssp             HHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCCEEECGG
T ss_pred             HHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HhCCceEEecc
Confidence            5688999999999999987655  899999999  9999999999999999 8999999999999999 99999999987


Q ss_pred             C-cccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           88 E-ETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        88 ~-~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      + .+++.+.+++.+++++|++||++|+ +.+..++++++++ |+++.+|.....     ...++...++.++ ++.|+..
T Consensus       246 ~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~-~i~g~~~  319 (374)
T 1cdo_A          246 DHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLH-----DVATRPIQLIAGR-TWKGSMF  319 (374)
T ss_dssp             GCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSS-----CEEECHHHHHTTC-EEEECSG
T ss_pred             ccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCC-----CcccCHHHHhcCC-eEEEEec
Confidence            5 1268888988887799999999997 6889999999999 999999976431     1234555666777 8888765


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ..+.  ..+.++++++++.+|.+++  .++.++||+++.+||+.+.+++. +|+|+++
T Consensus       320 ~~~~--~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  374 (374)
T 1cdo_A          320 GGFK--GKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKC-IRTVLSL  374 (374)
T ss_dssp             GGCC--HHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             CCCC--cHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCe-eEEEEeC
Confidence            4321  2567899999999999884  56788999999999999988775 6999875

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.96  E-value=8.5e-29  Score=196.05  Aligned_cols=202  Identities=17%  Similarity=0.092  Sum_probs=165.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++|.+ .+..++++++.... ++|++|+|+  |++|++++|+|+..|++ +++++.+++|+++++ ++|+++++|+++
T Consensus       137 ~~~aa~l-~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~-~lGa~~~i~~~~  214 (346)
T 4a2c_A          137 IEDGAFI-EPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAK-SFGAMQTFNSSE  214 (346)
T ss_dssp             GGGGGGH-HHHHHHHHHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCSEEEETTT
T ss_pred             HHHHHhc-hHHHHHHHHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHH-HcCCeEEEeCCC
Confidence            4455544 35566666666666 999999999  99999999999999995 578888999999999 999999999998


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      . +..+.++..+++ ++|+++|++|+ ..++.++++++++|+++.+|......   .....+...++.+++++.|+....
T Consensus       215 ~-~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~~---~~~~~~~~~~~~k~~~i~G~~~~~  290 (346)
T 4a2c_A          215 M-SAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDL---HLTSATFGKILRKELTVIGSWMNY  290 (346)
T ss_dssp             S-CHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSCE---EECHHHHHHHHHHTCEEEECCTTC
T ss_pred             C-CHHHHHHhhcccCCcccccccccccchhhhhhheecCCeEEEEEeccCCCc---cccccCHHHHhhceeEEEEEeccc
Confidence            7 888888888887 99999999996 67899999999999999999765421   112234456788999999987644


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCc--cceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          167 HFDLHQDFISMTCDALRAGKIQP--LEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~--~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ......+.++++++++++|++++  .++++|+|+++.+||+.+.+++..||+||.+
T Consensus       291 ~~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P  346 (346)
T 4a2c_A          291 SSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP  346 (346)
T ss_dssp             CSSTTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred             cCcchHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence            32233567889999999998864  4788999999999999999999999999863

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.96  E-value=2.2e-28  Score=194.01  Aligned_cols=195  Identities=16%  Similarity=0.151  Sum_probs=164.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC-
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE-   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~-   88 (223)
                      +++|| +..++.|||+++.... ++|++|||+  |++|++++|+|+..|++|+++++++++++.++ ++|++.++|+++ 
T Consensus       145 ~~~aa-~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~~~~~~  222 (352)
T 1e3j_A          145 LEEGA-LLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NCGADVTLVVDPA  222 (352)
T ss_dssp             HHHHH-THHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEEECCTT
T ss_pred             HHHHH-hhchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HhCCCEEEcCccc
Confidence            44555 4468899999996655 999999999  99999999999999999999999999999999 999999999885 


Q ss_pred             cccHHHHHHHhCC---C-CccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeee
Q 043295           89 ETDLKATLKRYFP---D-GIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFL  163 (223)
Q Consensus        89 ~~~~~~~i~~~~~---~-~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  163 (223)
                      . ++.+.+++.++   + ++|++||++|+. .+..++++++++|+++.+|....      ...++...++.+++++.|+.
T Consensus       223 ~-~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~~~~~i~g~~  295 (352)
T 1e3j_A          223 K-EEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQ------MVTVPLVNACAREIDIKSVF  295 (352)
T ss_dssp             T-SCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSS------CCCCCHHHHHTTTCEEEECC
T ss_pred             c-cHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCC------CccccHHHHHhcCcEEEEec
Confidence            5 77788888775   4 899999999975 78999999999999999986432      23456677888999999876


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCCC--ccceeeeccCCHHHHHHHhHcCC-CcCcEEEEecC
Q 043295          164 STDHFDLHQDFISMTCDALRAGKIQ--PLEDISNGVDSIPSAFTGFFRGD-NIGKKFVRIAG  222 (223)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~i~--~~~~~~~~l~~~~~a~~~~~~~~-~~gk~v~~~~~  222 (223)
                      ..      .+.++++++++++|.++  +.++.+|||+++++||+.+.+++ ..||+|+++++
T Consensus       296 ~~------~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  351 (352)
T 1e3j_A          296 RY------CNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ  351 (352)
T ss_dssp             SC------SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEECCC
T ss_pred             cc------hHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence            43      23478899999999865  56778899999999999999988 68999999863

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=99.96  E-value=8.9e-29  Score=196.59  Aligned_cols=193  Identities=20%  Similarity=0.185  Sum_probs=164.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh-h-CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-Q-KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~-~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++|++++++.|||+++.+.. + +|++|||+  |++|++++|+|+..|++|+++++++++++.+++++|+++++|+.+
T Consensus       155 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~  234 (357)
T 2cf5_A          155 VEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSD  234 (357)
T ss_dssp             HHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTC
T ss_pred             HHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeecccc
Confidence            5588999999999999998877 7 99999999  999999999999999999999999999888765899999999875


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      .    +.+++.++ ++|++|||+|+. .+..++++++++|+++.+|.....     ...++.. ++.+++++.|+.... 
T Consensus       235 ~----~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~-~~~~~~~i~g~~~~~-  302 (357)
T 2cf5_A          235 Q----AKMSELAD-SLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNP-----LQFLTPL-LMLGRKVITGSFIGS-  302 (357)
T ss_dssp             H----HHHHHSTT-TEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSC-----CCCCHHH-HHHHTCEEEECCSCC-
T ss_pred             H----HHHHHhcC-CCCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCC-----ccccCHH-HHhCccEEEEEccCC-
Confidence            3    34555543 799999999974 788999999999999999975431     1124555 788999999987654 


Q ss_pred             cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          168 FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                          .+.++++++++++|.+++.+ .++||+++++||+.+.+++..||+|+++++
T Consensus       303 ----~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  352 (357)
T 2cf5_A          303 ----MKETEEMLEFCKEKGLSSII-EVVKMDYVNTAFERLEKNDVRYRFVVDVEG  352 (357)
T ss_dssp             ----HHHHHHHHHHHHHTTCCCCE-EEEEGGGHHHHHHHHHTTCSSSEEEEETTS
T ss_pred             ----HHHHHHHHHHHHcCCCCCce-EEEeHHHHHHHHHHHHCCCCceEEEEeCCc
Confidence                56788999999999999876 689999999999999999888999999854

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.96  E-value=5e-30  Score=221.22  Aligned_cols=198  Identities=18%  Similarity=0.252  Sum_probs=170.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++++|+++++++|||+++.+..  ++|++|||+   |++|++++|+||..|++|+++++++ |.+.++  +|+++++|++
T Consensus       320 ~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~~l~--lga~~v~~~~  396 (795)
T 3slk_A          320 FARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQAVE--LSREHLASSR  396 (795)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGGGSC--SCGGGEECSS
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhhhhh--cChhheeecC
Confidence            6699999999999999997766  999999999   8999999999999999999999665 656553  8999999999


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      +. ++.+.+++.+++ |+|+||||+|++.+..++++++++|+++.+|.....       .........++.++.++....
T Consensus       397 ~~-~~~~~i~~~t~g~GvDvVld~~gg~~~~~~l~~l~~~Gr~v~iG~~~~~-------~~~~~~~~~~~~~~~~~~l~~  468 (795)
T 3slk_A          397 TC-DFEQQFLGATGGRGVDVVLNSLAGEFADASLRMLPRGGRFLELGKTDVR-------DPVEVADAHPGVSYQAFDTVE  468 (795)
T ss_dssp             SS-THHHHHHHHSCSSCCSEEEECCCTTTTHHHHTSCTTCEEEEECCSTTCC-------CHHHHHHHSSSEEEEECCGGG
T ss_pred             Ch-hHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHhcCCCEEEEecccccc-------CcccccccCCCCEEEEeeccc
Confidence            87 999999999998 999999999999999999999999999999965431       111122334677777766543


Q ss_pred             c-cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          167 H-FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       167 ~-~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      . +....+.++++++++++|.++|.+..+||++++.+||+.+.+++..||+|++++
T Consensus       469 ~~~~~~~~~l~~~~~l~~~g~l~p~~~~~~~l~~~~eA~~~l~~g~~~GKvVl~~~  524 (795)
T 3slk_A          469 AGPQRIGEMLHELVELFEGRVLEPLPVTAWDVRQAPEALRHLSQARHVGKLVLTMP  524 (795)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEGGGHHHHHHHHHHTCCCBEEEEECC
T ss_pred             cCHHHHHHHHHHHHHHHHcCCcCCCcceeEcHHHHHHHHHHHhcCCccceEEEecC
Confidence            2 445567899999999999999999999999999999999999999999999975

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=99.96  E-value=1.2e-29  Score=201.93  Aligned_cols=193  Identities=16%  Similarity=0.086  Sum_probs=164.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++++|++++++.|||+++.+.. ++|++|||+  |++|++++|+|+..|++|+++++++++++.++ ++|+++++|+.+.
T Consensus       155 ~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~-~lGa~~v~~~~~~  233 (360)
T 1piw_A          155 SHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM-KMGADHYIATLEE  233 (360)
T ss_dssp             HHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HHTCSEEEEGGGT
T ss_pred             HHHhhhhhhhHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HcCCCEEEcCcCc
Confidence            5588999999999999998866 999999999  99999999999999999999999999999999 8999999988653


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCCh---HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGG---EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~---~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      .++.+.++    +++|++|||+|+   ..+..++++++++|+++.+|.... .     ..++...++.+++++.|+....
T Consensus       234 ~~~~~~~~----~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~-~-----~~~~~~~~~~~~~~i~g~~~~~  303 (360)
T 1piw_A          234 GDWGEKYF----DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ-H-----EMLSLKPYGLKAVSISYSALGS  303 (360)
T ss_dssp             SCHHHHSC----SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS-S-----CCEEECGGGCBSCEEEECCCCC
T ss_pred             hHHHHHhh----cCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC-c-----cccCHHHHHhCCeEEEEEecCC
Confidence            13444433    479999999997   578889999999999999987542 1     1234445677889999877655


Q ss_pred             ccchHHHHHHHHHHHHHcCCCCccceeeeccCC--HHHHHHHhHcCCCcCcEEEEecC
Q 043295          167 HFDLHQDFISMTCDALRAGKIQPLEDISNGVDS--IPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~--~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                           .+.++++++++++|.+++.+ .+++|++  +++||+.+.+++..||+|+++++
T Consensus       304 -----~~~~~~~~~l~~~g~l~~~i-~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~~~  355 (360)
T 1piw_A          304 -----IKELNQLLKLVSEKDIKIWV-ETLPVGEAGVHEAFERMEKGDVRYRFTLVGYD  355 (360)
T ss_dssp             -----HHHHHHHHHHHHHTTCCCCE-EEEESSHHHHHHHHHHHHHTCCSSEEEEECCH
T ss_pred             -----HHHHHHHHHHHHhCCCcceE-EEEeccHhHHHHHHHHHHCCCCceEEEEecCc
Confidence                 56789999999999999988 8899999  99999999998888999999864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.9e-28  Score=193.03  Aligned_cols=197  Identities=19%  Similarity=0.287  Sum_probs=170.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++|++++++.|||+++.+.. ++|++|||+   |++|++++|+++..|++|+++++++++.+.++ ++|++.++|+.+
T Consensus       145 ~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~-~~g~~~~~d~~~  223 (347)
T 2hcy_A          145 LAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR-SIGGEVFIDFTK  223 (347)
T ss_dssp             HHHHGGGGTHHHHHHHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHH-HTTCCEEEETTT
T ss_pred             HHHHHHHhhhHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH-HcCCceEEecCc
Confidence            5578999999999999998877 999999999   68999999999999999999999999999998 899999999874


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      .+++.+.+++.+++++|++||++|. ..+..++++++++|+++.+|.....     ...++...++.+++++.|+.... 
T Consensus       224 ~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~-  297 (347)
T 2hcy_A          224 EKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGA-----KCCSDVFNQVVKSISIVGSYVGN-  297 (347)
T ss_dssp             CSCHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTTC-----EEEEEHHHHHHTTCEEEECCCCC-
T ss_pred             cHhHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCCC-----CCCCCHHHHhhCCcEEEEccCCC-
Confidence            3278888888776689999999997 7889999999999999999876532     12345667788999999987655 


Q ss_pred             cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          168 FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                          .+.++++++++++|.+++.+ .++||+++++||+.+.+++..||+|++++
T Consensus       298 ----~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  346 (347)
T 2hcy_A          298 ----RADTREALDFFARGLVKSPI-KVVGLSTLPEIYEKMEKGQIVGRYVVDTS  346 (347)
T ss_dssp             ----HHHHHHHHHHHHTTSCCCCE-EEEEGGGHHHHHHHHHTTCCSSEEEEESC
T ss_pred             ----HHHHHHHHHHHHhCCCccce-EEEcHHHHHHHHHHHHcCCcceeEEEecC
Confidence                56788999999999999864 68999999999999999888899999875

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.96  E-value=4.6e-29  Score=194.03  Aligned_cols=194  Identities=23%  Similarity=0.292  Sum_probs=162.1

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++|+++.++.|||+++.+.. ++|++|+|+   |++|++++|+|+..|++|+++++++++++.++ ++|++.++|+++
T Consensus       101 ~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~~~~~~~  179 (302)
T 1iz0_A          101 PEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-ALGAEEAATYAE  179 (302)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HTTCSEEEEGGG
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCCCEEEECCc
Confidence            4588999999999999998776 899999999   79999999999999999999999999999998 899999999876


Q ss_pred             -cccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 -ETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 -~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                       . ++.+.+     +++|++|| +|++.+..++++++++|+++.+|.....     ...++...++.+++++.|+....+
T Consensus       180 ~~-~~~~~~-----~~~d~vid-~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~  247 (302)
T 1iz0_A          180 VP-ERAKAW-----GGLDLVLE-VRGKEVEESLGLLAHGGRLVYIGAAEGE-----VAPIPPLRLMRRNLAVLGFWLTPL  247 (302)
T ss_dssp             HH-HHHHHT-----TSEEEEEE-CSCTTHHHHHTTEEEEEEEEEC------------CCCCTTHHHHTTCEEEECCHHHH
T ss_pred             ch-hHHHHh-----cCceEEEE-CCHHHHHHHHHhhccCCEEEEEeCCCCC-----CCCcCHHHHHhCCCeEEEEeccch
Confidence             5 555554     57999999 9988899999999999999999876542     123455667889999999875422


Q ss_pred             cchHHHHHHHHHH---HHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          168 FDLHQDFISMTCD---ALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       168 ~~~~~~~~~~~~~---~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                       ....+.++++++   ++.+|.+++.++.+++|+++++||+.+.+++..||+|+++
T Consensus       248 -~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  302 (302)
T 1iz0_A          248 -LREGALVEEALGFLLPRLGRELRPVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL  302 (302)
T ss_dssp             -TTCHHHHHHHHHHHGGGBTTTBCCCEEEEEEGGGHHHHHHHTTCTTCCBEEEEEC
T ss_pred             -hhhHHHHHHHHhhhHHHHcCCcccccceEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence             122567888889   9999999999999999999999999999888889999864

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.96  E-value=4.6e-29  Score=198.28  Aligned_cols=190  Identities=12%  Similarity=0.081  Sum_probs=163.5

Q ss_pred             hhhccccchhhHHHHHHHHh-hCC------CEEEEE--CchHHHH-HHHH-HHcCCe-EEEEecCHH---HHHHHHHhhC
Q 043295           15 FANGAGTSGFTAYVGFYEIS-QKG------EKVFVS--GAYGHLV-GQYA-KLGGCY-VVGSAGTNE---KVAILKEKLG   79 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~-~~g------~~vlI~--g~vG~~a-~qla-~~~g~~-v~~~~~~~~---~~~~~~~~~g   79 (223)
                      ++|+++.++.|||+++.... ++|      ++|||+  |++|+++ +|+| +..|++ |++++++++   ++++++ ++|
T Consensus       144 ~~aal~~~~~ta~~al~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~-~lG  222 (357)
T 2b5w_A          144 ELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE-ELD  222 (357)
T ss_dssp             TTGGGHHHHHHHHHHHHHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH-HTT
T ss_pred             hhhhhhchHHHHHHHHHhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH-HcC
Confidence            46778999999999996655 899      999999  9999999 9999 999996 999999988   999999 999


Q ss_pred             CCeeeecCCcccHHHHHHHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHH----Hh
Q 043295           80 FDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDI----VY  154 (223)
Q Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~----~~  154 (223)
                      ++++ |+++. ++.+ +++. ++++|+||||+|+. .+..++++++++|+++.+|.....     ...++...+    +.
T Consensus       223 a~~v-~~~~~-~~~~-i~~~-~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~~~~~~  293 (357)
T 2b5w_A          223 ATYV-DSRQT-PVED-VPDV-YEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDW-----AFEVDAGAFHREMVL  293 (357)
T ss_dssp             CEEE-ETTTS-CGGG-HHHH-SCCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCC-----CCCCCHHHHHHHHHH
T ss_pred             Cccc-CCCcc-CHHH-HHHh-CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCC-----CceecHHHHhHHHHh
Confidence            9999 98876 7777 7777 55899999999985 789999999999999999976521     224556666    78


Q ss_pred             hcceEEeeeccCccchHHHHHHHHHHHHHcC--C-CCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          155 KRIKIQGFLSTDHFDLHQDFISMTCDALRAG--K-IQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       155 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~-i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                      +++++.|+....     .+.++++++++++|  . +++.++.+++|+++++||+.+   +..||+|+++++
T Consensus       294 ~~~~i~g~~~~~-----~~~~~~~~~l~~~g~~~~~~~~i~~~~~l~~~~~A~~~~---~~~gKvvi~~~~  356 (357)
T 2b5w_A          294 HNKALVGSVNSH-----VEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFDDD---DTTIKTAIEFST  356 (357)
T ss_dssp             TTCEEEECCCCC-----HHHHHHHHHHHHHSCHHHHHHHEEEEEEGGGGGGGGCCS---TTCCEEEEECCC
T ss_pred             CCeEEEEeccCC-----HHHHHHHHHHHHhCchhhhhhhcceeecHHHHHHHHHHh---CCCceEEEEecC
Confidence            999999987655     67789999999999  8 688888899999999999988   357899999864

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.96  E-value=1.4e-27  Score=189.24  Aligned_cols=195  Identities=22%  Similarity=0.263  Sum_probs=164.4

Q ss_pred             hhhhhccccchhhHHHHHHHHhhCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEISQKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      +++||.+ .++.|||+++....-+|++|||+  |++|++++|+|+..|+ +|+++++++++++.++ ++|+++++|+++.
T Consensus       145 ~~~aa~~-~~~~ta~~~l~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~Ga~~~~~~~~~  222 (348)
T 2d8a_A          145 PEYATLQ-EPLGNAVDTVLAGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KVGADYVINPFEE  222 (348)
T ss_dssp             HHHHTTH-HHHHHHHHHHTTSCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HHTCSEEECTTTS
T ss_pred             HHHHHhh-hHHHHHHHHHHhcCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhCCCEEECCCCc
Confidence            4466655 48899999994321588999999  9999999999999999 9999999999999999 9999999999877


Q ss_pred             ccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCch-HHHHhhcceEEeeeccC
Q 043295           90 TDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNM-IDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        90 ~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~  166 (223)
                       ++.+.+++.+++ ++|++|||+|+ +.+..++++++++|+++.+|....      ...++. ..++.+++++.|+....
T Consensus       223 -~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~------~~~~~~~~~~~~~~~~i~g~~~~~  295 (348)
T 2d8a_A          223 -DVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPG------KVTIDFNNLIIFKALTIYGITGRH  295 (348)
T ss_dssp             -CHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSS------CCCCCHHHHTTTTTCEEEECCCCC
T ss_pred             -CHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCC------CcccCchHHHHhCCcEEEEecCCC
Confidence             899999999887 99999999997 788999999999999999987543      224556 66778999999876432


Q ss_pred             ccchHHHHHHHHHHHHHcCCC--Cccceeeec-cCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          167 HFDLHQDFISMTCDALRAGKI--QPLEDISNG-VDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i--~~~~~~~~~-l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                          ..+.++++++++++|.+  ++.++.+|| |+++++||+.+.+ ...||+|++++
T Consensus       296 ----~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~-~~~gKvvi~~~  348 (348)
T 2d8a_A          296 ----LWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRA-GKTGKVVFMLK  348 (348)
T ss_dssp             ----SHHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHT-TCCSEEEEEC-
T ss_pred             ----cHHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhC-CCceEEEEeeC
Confidence                14668899999999995  566778999 9999999999977 56799999864

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.96  E-value=1.1e-28  Score=194.16  Aligned_cols=199  Identities=21%  Similarity=0.308  Sum_probs=157.9

Q ss_pred             hhhhhccccchhhHHHHHHHH---h-hCCC-EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEI---S-QKGE-KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF   84 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~---~-~~g~-~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~   84 (223)
                      ++++|++++++.|||.++...   . ++++ +|||+   |++|++++|+|+..|++|+++++++++++.++ ++|+++++
T Consensus       121 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~-~lGa~~~i  199 (328)
T 1xa0_A          121 LKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VLGAKEVL  199 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HTTCSEEE
T ss_pred             HHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCcEEE
Confidence            568999999999999888644   3 7776 89999   89999999999999999999999999999999 89999999


Q ss_pred             ecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           85 NYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        85 ~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      |+.+. + .+.+++.+++++|++|||+|++.+..++++++++|+++.+|...+.     ...++...++.+++++.|+..
T Consensus       200 ~~~~~-~-~~~~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~  272 (328)
T 1xa0_A          200 AREDV-M-AERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGA-----EVPTTVHPFILRGVSLLGIDS  272 (328)
T ss_dssp             ECC-----------CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSSS-----CCCCCSHHHHHTTCEEEECCS
T ss_pred             ecCCc-H-HHHHHHhcCCcccEEEECCcHHHHHHHHHhhccCCEEEEEeecCCC-----CCCCchhhhhhcCceEEEEec
Confidence            98764 3 3445555555899999999998899999999999999999976532     223455667889999999853


Q ss_pred             cCc-cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          165 TDH-FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       165 ~~~-~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                      ... .....+.++.+.+++.+| +++ +..+++|+++++||+.+.+++..||+|++++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~g-l~~-~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  328 (328)
T 1xa0_A          273 VYCPMDLRLRIWERLAGDLKPD-LER-IAQEISLAELPQALKRILRGELRGRTVVRLA  328 (328)
T ss_dssp             SSCCHHHHHHHHHHHHTTTCCC-HHH-HEEEEEGGGHHHHHHHHHHTCCCSEEEEECC
T ss_pred             ccCCHHHHHHHHHHHHHHHHcC-Cce-eeeEeCHHHHHHHHHHHHcCCCCCeEEEEeC
Confidence            322 222345677788888888 776 4688999999999999999988999999863

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=99.96  E-value=3.6e-28  Score=193.63  Aligned_cols=192  Identities=14%  Similarity=0.103  Sum_probs=164.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh-h-CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-Q-KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~-~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++|++++++.|||+++.+.. + +|++|||+  |++|++++|+|+..|++|+++++++++++.+++++|++.++|+.+
T Consensus       162 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~  241 (366)
T 1yqd_A          162 LDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRD  241 (366)
T ss_dssp             TTTTGGGGTHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTC
T ss_pred             HHHhhhhhhhHHHHHHHHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccC
Confidence            4578999999999999998877 6 99999999  999999999999999999999999999888765899999999875


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      .    +.+++.++ ++|+||||+|+. .+..++++++++|+++.+|.....      ..++...++.+++++.|+.... 
T Consensus       242 ~----~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~------~~~~~~~~~~~~~~i~g~~~~~-  309 (366)
T 1yqd_A          242 Q----EQMQAAAG-TLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKP------LELPAFSLIAGRKIVAGSGIGG-  309 (366)
T ss_dssp             H----HHHHHTTT-CEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSSC------EEECHHHHHTTTCEEEECCSCC-
T ss_pred             H----HHHHHhhC-CCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCCC------CCcCHHHHHhCCcEEEEecCCC-
Confidence            3    24555553 799999999974 688999999999999999875431      1345667888999999987654 


Q ss_pred             cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          168 FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                          .+.+.++++++.+|.+++.+ .+|||+++++||+.+.+++..||+|++++
T Consensus       310 ----~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~~~gKvvl~~~  358 (366)
T 1yqd_A          310 ----MKETQEMIDFAAKHNITADI-EVISTDYLNTAMERLAKNDVRYRFVIDVG  358 (366)
T ss_dssp             ----HHHHHHHHHHHHHTTCCCCE-EEECGGGHHHHHHHHHTTCCSSEEEECHH
T ss_pred             ----HHHHHHHHHHHHcCCCCCce-EEEcHHHHHHHHHHHHcCCcceEEEEEcc
Confidence                56788999999999999877 68999999999999999988899999874

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.96  E-value=1.8e-29  Score=198.65  Aligned_cols=200  Identities=21%  Similarity=0.311  Sum_probs=162.6

Q ss_pred             hhhhhccccchhhHHHHHHHH---h-hCCC-EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEI---S-QKGE-KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF   84 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~---~-~~g~-~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~   84 (223)
                      ++++|+++.++.|||+++...   . ++++ +|||+   |++|++++|+|+..|++|+++++++++++.++ ++|++.++
T Consensus       122 ~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~-~lGa~~v~  200 (330)
T 1tt7_A          122 LKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK-QLGASEVI  200 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH-HHTCSEEE
T ss_pred             HHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCcEEE
Confidence            568999999999999888654   2 7776 89999   89999999999999999999999999999999 89999999


Q ss_pred             ecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           85 NYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        85 ~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      |+++. + .+.+++.+++++|++|||+|++.+..++++++++|+++.+|...+.     ....+...++.+++++.|+..
T Consensus       201 ~~~~~-~-~~~~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~-----~~~~~~~~~~~~~~~i~g~~~  273 (330)
T 1tt7_A          201 SREDV-Y-DGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGG-----EVPATVYPFILRGVSLLGIDS  273 (330)
T ss_dssp             EHHHH-C-SSCCCSSCCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSCS-----CEEECSHHHHTSCCEEEECCS
T ss_pred             ECCCc-h-HHHHHHhhcCCccEEEECCcHHHHHHHHHhhcCCCEEEEEecCCCC-----ccCcchHHHHhcCeEEEEEec
Confidence            87543 2 2223344444899999999998899999999999999999976532     113345567889999999853


Q ss_pred             cCc-cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          165 TDH-FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       165 ~~~-~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                      ... .....+.++.+.+++++|.+++.++.++||+++.+||+.+.+++..||+|+++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  330 (330)
T 1tt7_A          274 VYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL  330 (330)
T ss_dssp             SSCCHHHHHHHHHHTTTTSCCSCSTTSEEEEECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred             cccCHHHHHHHHHHHHHHHhcCCcccccceEEcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            322 22234567778888889999998889999999999999999988889999864

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.96  E-value=4.8e-28  Score=191.44  Aligned_cols=194  Identities=18%  Similarity=0.194  Sum_probs=163.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++|.+ .++.|||+++.+.. -+|++|||+  |++|++++|+|+..|+ +|+++++++++++.++ ++ +++++|+++
T Consensus       141 ~~~aa~~-~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~l-a~~v~~~~~  217 (343)
T 2dq4_A          141 FEVAAIL-EPFGNAVHTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR-PY-ADRLVNPLE  217 (343)
T ss_dssp             HHHHTTH-HHHHHHHHHHHSTTCCTTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGT-TT-CSEEECTTT
T ss_pred             HHHHHhh-hHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-HHhccCcCc
Confidence            3455554 67889999996333 489999999  9999999999999999 9999999999999998 88 999999987


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCch-HHHHhhcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNM-IDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~  166 (223)
                      . ++.+.+++.+++++|++||++|+ +.+..++++++++|+++.+|....      ...++. ..++.+++++.|+....
T Consensus       218 ~-~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~------~~~~~~~~~~~~~~~~i~g~~~~~  290 (343)
T 2dq4_A          218 E-DLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSD------PIRFDLAGELVMRGITAFGIAGRR  290 (343)
T ss_dssp             S-CHHHHHHHHHSSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSS------CEEECHHHHTGGGTCEEEECCSCC
T ss_pred             c-CHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCC------CceeCcHHHHHhCceEEEEeecCC
Confidence            6 88999988883399999999998 788999999999999999987532      124455 66788999999986542


Q ss_pred             ccchHHHHHHHHHHHHHcCCC--CccceeeeccCCHHHHHHHhHcCCCcCcEEEEec
Q 043295          167 HFDLHQDFISMTCDALRAGKI--QPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA  221 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~i--~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~  221 (223)
                          ..+.++++++++++|.+  ++.++.++||+++++||+.+.+++. ||+|++++
T Consensus       291 ----~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-gKvv~~~~  342 (343)
T 2dq4_A          291 ----LWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQA-VKVILDPK  342 (343)
T ss_dssp             ----TTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSC-SEEEEETT
T ss_pred             ----CHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCc-eEEEEeeC
Confidence                14668899999999995  5667889999999999999998877 99999875

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=99.95  E-value=1.5e-28  Score=192.22  Aligned_cols=187  Identities=14%  Similarity=0.106  Sum_probs=142.2

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++++|++++++.|||+++.... ++|++|||+  |++|++++|+|+..|++|++++ +++++++++ ++|++++++    
T Consensus       118 ~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~-~lGa~~v~~----  191 (315)
T 3goh_A          118 FERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAA-KRGVRHLYR----  191 (315)
T ss_dssp             HHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHH-HHTEEEEES----
T ss_pred             HHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHH-HcCCCEEEc----
Confidence            5688899999999999994334 999999999  9999999999999999999999 999999999 999999884    


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc--
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH--  167 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--  167 (223)
                       + .+.+    ++++|++|||+|++.+..++++++++|+++.+|.....         .....+.+.+.+.+......  
T Consensus       192 -d-~~~v----~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  256 (315)
T 3goh_A          192 -E-PSQV----TQKYFAIFDAVNSQNAAALVPSLKANGHIICIQDRIPA---------PIDPAFTRTISYHEIALGALHD  256 (315)
T ss_dssp             -S-GGGC----CSCEEEEECC-------TTGGGEEEEEEEEEECCC-------------------CCSEEEEECGGGHHH
T ss_pred             -C-HHHh----CCCccEEEECCCchhHHHHHHHhcCCCEEEEEeCCCCc---------cccchhhhcceeeEEEeecccc
Confidence             1 1122    44999999999998778899999999999999754321         11223344555555444322  


Q ss_pred             ---cc---hHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          168 ---FD---LHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       168 ---~~---~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                         +.   ...+.++++++++++|.+++.++.++||+++++||+.+.  +..||+|+++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~gKvvi~~~~  315 (315)
T 3goh_A          257 FGDRQDWQILMQQGEALLTLIAQGKMEIAAPDIFRFEQMIEALDHSE--QTKLKTVLTLNE  315 (315)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHHH--HHCCCEEEESCC
T ss_pred             cCChhHHHHHHHHHHHHHHHHHCCCcccccceEecHHHHHHHHHHHH--hcCCcEEEEecC
Confidence               11   334568899999999999999999999999999999998  667999999864

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.95  E-value=1.2e-28  Score=197.22  Aligned_cols=200  Identities=13%  Similarity=0.114  Sum_probs=165.0

Q ss_pred             hhhhhccccchhhHHHHHHHHhhCCCEEEEE----CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEISQKGEKVFVS----GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~~~g~~vlI~----g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++++|++++.++|||+++....++|++|||+    |++|++++|+|+..|++|++++++++++++++ ++|+++++|+++
T Consensus       147 ~~~aa~l~~~~~ta~~~~~~~~~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~~~~~~~  225 (379)
T 3iup_A          147 PADGASSFVNPLTALGMVETMRLEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLK-AQGAVHVCNAAS  225 (379)
T ss_dssp             HHHHTTSSHHHHHHHHHHHHHHHTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHH-HTTCSCEEETTS
T ss_pred             HHHHHhhhhhHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hCCCcEEEeCCC
Confidence            5689999999999998876655899999998    78999999999999999999999999999999 999999999998


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhc-----cC-----------cEEEEEcccccccccccCCCCchH
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMN-----LF-----------GRVAACGVISECADASKRAVPNMI  150 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~-----~~-----------G~~v~~g~~~~~~~~~~~~~~~~~  150 (223)
                      . ++.+.+++.+++ ++|++|||+|+ .....++++++     ++           |+++.+|.....       ..+..
T Consensus       226 ~-~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~~~-------~~~~~  297 (379)
T 3iup_A          226 P-TFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTS-------PTEFN  297 (379)
T ss_dssp             T-THHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSEEE-------EEEEC
T ss_pred             h-HHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhccccceeecccccCceEEEecCCCCC-------ccccc
Confidence            7 899999999988 99999999997 46677777775     44           666666654321       11223


Q ss_pred             HHHhhcceEEeeeccCc-----cchHHHHHHHHHHHHHcCCCCccceeeeccCCH--HHHHHHhHcCCCcCcEEEEecC
Q 043295          151 DIVYKRIKIQGFLSTDH-----FDLHQDFISMTCDALRAGKIQPLEDISNGVDSI--PSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       151 ~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~--~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                      ..+.+++++.|+....+     +....+.++.+.+++.+ .+++.++.+++|+++  ++||+.+.+++..||+|++++.
T Consensus       298 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~~~~l~~~~~~~A~~~l~~~~~~gKvVv~~~~  375 (379)
T 3iup_A          298 RNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKT-TFASHYSKEISLAEVLDLDMIAVYNKRATGEKYLINPNK  375 (379)
T ss_dssp             CCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTTT-TTCCCCSEEEEHHHHTCHHHHHHHTTCCTTCCEEEETTT
T ss_pred             cccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHhc-cCCCcceEEecHHHhhhHHHHHHHhcCCCCceEEEeCCC
Confidence            34567889999876554     23345667778888888 589999999999999  9999999999999999999864

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.94  E-value=9.1e-27  Score=185.65  Aligned_cols=190  Identities=13%  Similarity=0.049  Sum_probs=157.8

Q ss_pred             hhccccchhhHHHHHH-----HHh-h--C-------CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCH---HHHHHHH
Q 043295           16 ANGAGTSGFTAYVGFY-----EIS-Q--K-------GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTN---EKVAILK   75 (223)
Q Consensus        16 aa~l~~~~~ta~~~l~-----~~~-~--~-------g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~---~~~~~~~   75 (223)
                      .|+++.++.|||+++.     ... +  +       |++|||+  |++|++++|+|+..|++|+++++++   ++.+.++
T Consensus       145 ~Aal~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~  224 (366)
T 2cdc_A          145 IGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIE  224 (366)
T ss_dssp             TGGGHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHH
T ss_pred             hhhhcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHH
Confidence            3568889999999998     444 7  8       9999999  9999999999999999999999998   8889998


Q ss_pred             HhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh-HHH-HHHHHhhccCcEEEEEcccccccccccCCCCchHH--
Q 043295           76 EKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG-EML-EAAVANMNLFGRVAACGVISECADASKRAVPNMID--  151 (223)
Q Consensus        76 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~-~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~--  151 (223)
                       ++|++.+ | .+  ++.+.+++ +++++|++||++|+ ..+ ..++++++++|+++.+|.....     ...++...  
T Consensus       225 -~~ga~~v-~-~~--~~~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~-----~~~~~~~~~~  293 (366)
T 2cdc_A          225 -ETKTNYY-N-SS--NGYDKLKD-SVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSG-----SVPLDYKTLQ  293 (366)
T ss_dssp             -HHTCEEE-E-CT--TCSHHHHH-HHCCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSC-----EEEEEHHHHH
T ss_pred             -HhCCcee-c-hH--HHHHHHHH-hCCCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCC-----ccccChhhhH
Confidence             9999888 7 43  55566666 44689999999998 477 8999999999999999876431     12345556  


Q ss_pred             -HHhhcceEEeeeccCccchHHHHHHHHHHHHHcCC------CCccceeeeccCCHHHHHHHh-HcCCCcCcEEEEec
Q 043295          152 -IVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGK------IQPLEDISNGVDSIPSAFTGF-FRGDNIGKKFVRIA  221 (223)
Q Consensus       152 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~------i~~~~~~~~~l~~~~~a~~~~-~~~~~~gk~v~~~~  221 (223)
                       ++.+++++.|+....     .+.++++++++++|.      +++.++.+++|+++++||+.+ .++...||+|++++
T Consensus       294 ~~~~~~~~i~g~~~~~-----~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~~~~~~gKvvi~~~  366 (366)
T 2cdc_A          294 EIVHTNKTIIGLVNGQ-----KPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKIRILWE  366 (366)
T ss_dssp             HHHHTTCEEEECCCCC-----HHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHCCCTTCCEEEEECC
T ss_pred             HHHhcCcEEEEecCCC-----HHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhhhcCCceEEEEecC
Confidence             788999999976654     577899999999999      667788899999999999994 33567899999874

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.94  E-value=2.9e-26  Score=215.85  Aligned_cols=204  Identities=22%  Similarity=0.291  Sum_probs=173.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAF   84 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~   84 (223)
                      +++||++++++.|||+++.+..  ++|++|||+   |++|++++|+|+..|++|++++.++++.+++++.   +|+++++
T Consensus      1642 ~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~ 1721 (2512)
T 2vz8_A         1642 LEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFA 1721 (2512)
T ss_dssp             HHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTTEE
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceEEe
Confidence            5689999999999999997766  999999999   8999999999999999999999999999999842   6789999


Q ss_pred             ecCCcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeee
Q 043295           85 NYKEETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFL  163 (223)
Q Consensus        85 ~~~~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  163 (223)
                      ++++. ++.+.+++.+++ |+|+||||++++.+..++++++++|+++.+|......     .......++.+++++.|+.
T Consensus      1722 ~~~~~-~~~~~i~~~t~g~GvDvVld~~g~~~l~~~l~~L~~~Gr~V~iG~~~~~~-----~~~~~~~~~~~~~~~~g~~ 1795 (2512)
T 2vz8_A         1722 NSRDT-SFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCLAQHGRFLEIGKFDLSN-----NHALGMAVFLKNVTFHGIL 1795 (2512)
T ss_dssp             ESSSS-HHHHHHHHTTTSCCEEEEEECCCHHHHHHHHTTEEEEEEEEECCCHHHHT-----TCEEEGGGGGGCCEEEECC
T ss_pred             cCCCH-HHHHHHHHhcCCCCceEEEECCCchHHHHHHHhcCCCcEEEEeecccccc-----cCcccccccccCCcEEEee
Confidence            99887 899999999988 9999999999999999999999999999999654321     1112234567889999887


Q ss_pred             ccCc----cchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEecC
Q 043295          164 STDH----FDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAG  222 (223)
Q Consensus       164 ~~~~----~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~~~  222 (223)
                      ...+    +....+.++.+.+++.+|.+++.+..+||++++.+|++.+.+++..||+|+++++
T Consensus      1796 l~~~~~~~~~~~~~~l~~l~~~~~~g~l~p~i~~~f~l~ei~eA~~~l~~g~~~GKvVi~~~~ 1858 (2512)
T 2vz8_A         1796 LDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVEAAFRYMAQGKHIGKVVIQVRE 1858 (2512)
T ss_dssp             GGGTTSSCCHHHHHHHHHHHHHHTTTCSCCCCEEEEESSTHHHHHHHHHTTCCSSEEEEECSC
T ss_pred             HHHHhhhCHHHHHHHHHHHHHHHHcCCcCCCcceEecHHHHHHHHHhhhccCccceEEEECCC
Confidence            6443    2344566666777778899999999999999999999999999999999999854

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.94  E-value=2.7e-26  Score=183.47  Aligned_cols=199  Identities=20%  Similarity=0.248  Sum_probs=153.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh------hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS------QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA   83 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~------~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~   83 (223)
                      ++++|+++.++.|||+++.+..      ++|++|||+   |++|++++|+|+..|++|++++ ++++++.++ ++|++.+
T Consensus       154 ~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~-~lGa~~v  231 (375)
T 2vn8_A          154 HTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVR-KLGADDV  231 (375)
T ss_dssp             HHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHH-HTTCSEE
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHH-HcCCCEE
Confidence            5688999999999999996432      689999999   8999999999999999999998 678889998 9999999


Q ss_pred             eecCCcccHHHHHHHhCCCCccEEEcCCChH--HHHHHHHhhccCcEEEEEcccccccccccCCCCch----HHHHhh--
Q 043295           84 FNYKEETDLKATLKRYFPDGIDVYFDNVGGE--MLEAAVANMNLFGRVAACGVISECADASKRAVPNM----IDIVYK--  155 (223)
Q Consensus        84 ~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~----~~~~~~--  155 (223)
                      +|+.+. ++.+.+++.  +++|++|||+|+.  .+..++++++++|+++.+|...............+    ..++.+  
T Consensus       232 ~~~~~~-~~~~~~~~~--~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (375)
T 2vn8_A          232 IDYKSG-SVEEQLKSL--KPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKAL  308 (375)
T ss_dssp             EETTSS-CHHHHHHTS--CCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             EECCch-HHHHHHhhc--CCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCcccccccccccchhheeehhhccccc
Confidence            999886 787777653  3799999999986  45888899999999999986543100000000000    122222  


Q ss_pred             -----cceEEeeeccCccchHHHHHHHHHHHHHcCCCCccceeeeccCCHHHHHHHhHcCCCcCcEEEEe
Q 043295          156 -----RIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI  220 (223)
Q Consensus       156 -----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gk~v~~~  220 (223)
                           +..+.+...    ....+.++++++++++|.+++.++.++||+++++||+.+.+++..||+|+++
T Consensus       309 ~~~~~g~~~~~~~~----~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          309 KHFWKGVHYRWAFF----MASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHARGKTVINV  374 (375)
T ss_dssp             HHHHTTCEEEECCC----CCCHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCCCSSEEEEEC
T ss_pred             cccccCcceEEEEe----CCCHHHHHHHHHHHHCCCcccCcCeEECHHHHHHHHHHHHcCCCCCeEEEEe
Confidence                 222222111    1125678999999999999999999999999999999999988889999986

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.90  E-value=1.3e-22  Score=148.26  Aligned_cols=178  Identities=20%  Similarity=0.246  Sum_probs=140.3

Q ss_pred             cchhhhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee
Q 043295            9 HRSCYVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA   83 (223)
Q Consensus         9 ~~~~~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~   83 (223)
                      +.+ ++++|+++.++.|||+++.+..  ++|++|+|+   |++|.+++|+++..|++|+++++++++.+.++ ++|++.+
T Consensus        10 ~~~-~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~-~~g~~~~   87 (198)
T 1pqw_A           10 TLA-DNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS-RLGVEYV   87 (198)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-TTCCSEE
T ss_pred             CCC-HHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEE
Confidence            344 4588999999999999998765  899999999   79999999999999999999999999988888 8999888


Q ss_pred             eecCCcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEee
Q 043295           84 FNYKEETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGF  162 (223)
Q Consensus        84 ~~~~~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  162 (223)
                      +|+.+. ++.+.+.+.+++ ++|+++|++|++.+..++++++++|+++.+|......    ...++.. .+.+++++.++
T Consensus        88 ~d~~~~-~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~----~~~~~~~-~~~~~~~~~~~  161 (198)
T 1pqw_A           88 GDSRSV-DFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYA----DASLGLA-ALAKSASFSVV  161 (198)
T ss_dssp             EETTCS-THHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTT----TCEEEGG-GGTTTCEEEEC
T ss_pred             eeCCcH-HHHHHHHHHhCCCCCeEEEECCchHHHHHHHHHhccCCEEEEEcCCCCcC----cCcCChh-HhcCCcEEEEE
Confidence            888876 788888888766 8999999999888999999999999999999765321    1112222 34677888765


Q ss_pred             eccC----ccchHHHHHHHHHHHHHcCCCCccceee
Q 043295          163 LSTD----HFDLHQDFISMTCDALRAGKIQPLEDIS  194 (223)
Q Consensus       163 ~~~~----~~~~~~~~~~~~~~~~~~g~i~~~~~~~  194 (223)
                      ....    .+....+.++++++++++|+++|.+..+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~  197 (198)
T 1pqw_A          162 DLDLNLKLQPARYRQLLQHILQHVADGKLEVLPVTA  197 (198)
T ss_dssp             CHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCCCCC-
T ss_pred             ehHHhhccCHHHHHHHHHHHHHHHHcCCccCCCCCc
Confidence            4311    0112356789999999999999876543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.04  E-value=9.4e-10  Score=87.14  Aligned_cols=144  Identities=13%  Similarity=0.022  Sum_probs=97.8

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe--eeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD--AFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      ++++|+|+  |++|+++++.++..|++|+++++++++.+.++ +++...  +++++.. ++.+.+.     ++|+||+|+
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~-~~~~~~~~~~~~~~~-~~~~~~~-----~~DvVI~~~  238 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE-TLFGSRVELLYSNSA-EIETAVA-----EADLLIGAV  238 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHGGGSEEEECCHH-HHHHHHH-----TCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HhhCceeEeeeCCHH-HHHHHHc-----CCCEEEECC
Confidence            35899999  99999999999999999999999999999988 666544  3433332 4444443     499999999


Q ss_pred             ChHH-------HHHHHHhhccCcEEEEEcccccccccc-cCCCCchHHHHhhcceEEeeeccCc--c-----chHHHHHH
Q 043295          112 GGEM-------LEAAVANMNLFGRVAACGVISECADAS-KRAVPNMIDIVYKRIKIQGFLSTDH--F-----DLHQDFIS  176 (223)
Q Consensus       112 g~~~-------~~~~~~~l~~~G~~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~--~-----~~~~~~~~  176 (223)
                      +.+.       ....+..++++|+++.++...+...+. .....+...+..+++++.+......  +     ......+.
T Consensus       239 ~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~~~  318 (361)
T 1pjc_A          239 LVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTLP  318 (361)
T ss_dssp             CCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHHHH
Confidence            8532       567788999999999998765422110 0112233334456777666432211  1     11144567


Q ss_pred             HHHHHHHcCC
Q 043295          177 MTCDALRAGK  186 (223)
Q Consensus       177 ~~~~~~~~g~  186 (223)
                      .+++++.+|.
T Consensus       319 ~l~~l~~~G~  328 (361)
T 1pjc_A          319 YVVKLANQGL  328 (361)
T ss_dssp             HHHHHHHHGG
T ss_pred             HHHHHHhCCc
Confidence            8889998884

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.89  E-value=1.2e-08  Score=81.19  Aligned_cols=96  Identities=18%  Similarity=0.078  Sum_probs=74.3

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      ++++|+|.  |++|..+++.++..|++|+++++++++.+.+++.+|.....+.....++.+.+.     ++|+|++|++.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~-----~aDvVi~~~~~  241 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVK-----RADLVIGAVLV  241 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHH-----HCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHc-----CCCEEEECCCc
Confidence            57899999  999999999999999999999999999888873477754333322213444333     48999999975


Q ss_pred             HH-------HHHHHHhhccCcEEEEEcccc
Q 043295          114 EM-------LEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       114 ~~-------~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      +.       ....+..++++|.++.++...
T Consensus       242 p~~~t~~li~~~~l~~mk~g~~iV~va~~~  271 (377)
T 2vhw_A          242 PGAKAPKLVSNSLVAHMKPGAVLVDIAIDQ  271 (377)
T ss_dssp             TTSCCCCCBCHHHHTTSCTTCEEEEGGGGT
T ss_pred             CCCCCcceecHHHHhcCCCCcEEEEEecCC
Confidence            32       567889999999999998644

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.89  E-value=2.6e-08  Score=79.10  Aligned_cols=146  Identities=12%  Similarity=0.030  Sum_probs=90.4

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      ++++|+|+  |++|..+++.++..|++|+++++++++.+.+++.+|.....+..+..++.+.+.     ++|++++|++.
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~-----~~DvVi~~~g~  239 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQ-----HADLLIGAVLV  239 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHH-----HCSEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHh-----CCCEEEECCCC
Confidence            46899999  999999999999999999999999999888873477753333333213444433     49999999985


Q ss_pred             HH-------HHHHHHhhccCcEEEEEccccccccccc-CCCCchHHHHhhcceEEeeeccCc--cc-----hHHHHHHHH
Q 043295          114 EM-------LEAAVANMNLFGRVAACGVISECADASK-RAVPNMIDIVYKRIKIQGFLSTDH--FD-----LHQDFISMT  178 (223)
Q Consensus       114 ~~-------~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~--~~-----~~~~~~~~~  178 (223)
                      ..       ....+..++++|.++.++...+...+.. +.+.+...+..+++++.+....+-  +.     .....+..+
T Consensus       240 ~~~~~~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l  319 (369)
T 2eez_A          240 PGAKAPKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYV  319 (369)
T ss_dssp             ------CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHH
T ss_pred             CccccchhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHH
Confidence            42       5678889999999999987543211000 111222233346666666542221  11     113456778


Q ss_pred             HHHHHcCC
Q 043295          179 CDALRAGK  186 (223)
Q Consensus       179 ~~~~~~g~  186 (223)
                      .+++.+|.
T Consensus       320 ~~l~~~g~  327 (369)
T 2eez_A          320 LKLAEKGL  327 (369)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHhcCh
Confidence            88888874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.71  E-value=1.1e-08  Score=81.58  Aligned_cols=142  Identities=15%  Similarity=0.082  Sum_probs=90.6

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCC---------------c---ccHHH
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKE---------------E---TDLKA   94 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~---------------~---~~~~~   94 (223)
                      ++++|+|.  |.+|+.++++++.+|++|+++++++.+.+.++ ++|++.+ ++..+               .   ....+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVE-SLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH-HTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            68899999  99999999999999999999999988888888 7998655 23311               0   00112


Q ss_pred             HHHHhCCCCccEEEcCC---ChH---H-HHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           95 TLKRYFPDGIDVYFDNV---GGE---M-LEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        95 ~i~~~~~~~~d~vid~~---g~~---~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      .+.+... ++|+|++|+   |..   . ....+..|++++.++.++...+.....   ..+...+..+++++.|+...+ 
T Consensus       250 ~l~~~~~-~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~---~~~~~~~~~~~v~i~g~~~~p-  324 (384)
T 1l7d_A          250 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL---SEPGKIVVKHGVKIVGHTNVP-  324 (384)
T ss_dssp             HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTT---CCTTCEEEETTEEEECCSSGG-
T ss_pred             HHHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeec---ccCCcEEEECCEEEEEeCCCc-
Confidence            2333332 599999999   532   1 367889999999999999754321110   111112345677777754322 


Q ss_pred             cchHHHHHHHHHHHHHcCCC
Q 043295          168 FDLHQDFISMTCDALRAGKI  187 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i  187 (223)
                          ........+++.++.+
T Consensus       325 ----~~~~~~a~~l~~~~~~  340 (384)
T 1l7d_A          325 ----SRVAADASPLFAKNLL  340 (384)
T ss_dssp             ----GGGHHHHHHHHHHHHH
T ss_pred             ----chhHHHHHHHHHHhHH
Confidence                1123335555555543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.62  E-value=1.5e-07  Score=76.94  Aligned_cols=102  Identities=16%  Similarity=0.202  Sum_probs=81.1

Q ss_pred             chhhHHHHHHHHh---hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHH
Q 043295           22 SGFTAYVGFYEIS---QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATL   96 (223)
Q Consensus        22 ~~~ta~~~l~~~~---~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i   96 (223)
                      ...++|+++.+..   .+|++|+|.  |.+|..++|.++..|++|+++++++.+.+.++ ++|++ +.      ++.+.+
T Consensus       256 ~~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~-~~Ga~-~~------~l~e~l  327 (494)
T 3ce6_A          256 TRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAM-MEGFD-VV------TVEEAI  327 (494)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-EC------CHHHHG
T ss_pred             hhhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCE-Ee------cHHHHH
Confidence            4566777776554   689999999  99999999999999999999999999988888 88885 22      233222


Q ss_pred             HHhCCCCccEEEcCCChH-HHH-HHHHhhccCcEEEEEcccc
Q 043295           97 KRYFPDGIDVYFDNVGGE-MLE-AAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        97 ~~~~~~~~d~vid~~g~~-~~~-~~~~~l~~~G~~v~~g~~~  136 (223)
                           .+.|+|++|+|.. .+. ..+..++++|+++.+|...
T Consensus       328 -----~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          328 -----GDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             -----GGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSG
T ss_pred             -----hCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence                 2599999999864 344 7888999999999998643

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.51  E-value=1.8e-07  Score=74.91  Aligned_cols=122  Identities=14%  Similarity=0.072  Sum_probs=81.4

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee-ecC-------------CcccH----HHH
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF-NYK-------------EETDL----KAT   95 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~-~~~-------------~~~~~----~~~   95 (223)
                      ++.+|+|.  |.+|+.++++++.+|++|+++++++++.+.++ ++|++.+. +..             .. ++    .+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~-~lGa~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~  248 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ-SMGAEFLELDFKEEAGSGDGYAKVMSD-AFIKAEMEL  248 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHH-HTTCEECCC--------CCHHHHHHSH-HHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HcCCEEEEecccccccccccchhhccH-HHHHHHHHH
Confidence            47899999  99999999999999999999999999988887 88886542 211             00 11    112


Q ss_pred             HHHhCCCCccEEEcCC---ChH--H--HHHHHHhhccCcEEEEEcccccccccccCCCCchH-HHHhhcceEEeee
Q 043295           96 LKRYFPDGIDVYFDNV---GGE--M--LEAAVANMNLFGRVAACGVISECADASKRAVPNMI-DIVYKRIKIQGFL  163 (223)
Q Consensus        96 i~~~~~~~~d~vid~~---g~~--~--~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~  163 (223)
                      +.+... +.|+|++|+   |..  .  ....+..|++++.++.++...+...+.   ..... .+..+++++.|..
T Consensus       249 l~e~~~-~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~---~~~~~p~~~~~gv~i~g~~  320 (401)
T 1x13_A          249 FAAQAK-EVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY---TVPGEIFTTENGVKVIGYT  320 (401)
T ss_dssp             HHHHHH-HCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT---CCTTSEEECTTSCEEECCS
T ss_pred             HHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc---ccCCCceEEECCEEEEeeC
Confidence            222222 489999995   311  1  257889999999999999754322111   11111 1345778888754

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.37  E-value=8e-07  Score=60.88  Aligned_cols=106  Identities=12%  Similarity=0.112  Sum_probs=78.3

Q ss_pred             chhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHH
Q 043295           22 SGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKR   98 (223)
Q Consensus        22 ~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~   98 (223)
                      +..+++.+++... ..+++|+|.  |.+|...++.++..|++|+..++++++.+.+.+++|... ..+.   ++.+.+. 
T Consensus         5 ~~sv~~~a~~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~-~~~~---~~~~~~~-   79 (144)
T 3oj0_A            5 KVSIPSIVYDIVRKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEY-VLIN---DIDSLIK-   79 (144)
T ss_dssp             CCSHHHHHHHHHHHHCCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEE-EECS---CHHHHHH-
T ss_pred             cccHHHHHHHHHHhccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCce-Eeec---CHHHHhc-
Confidence            5678888888877 789999999  999999888888889999999999988776554787532 2222   3444443 


Q ss_pred             hCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           99 YFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        99 ~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                          ++|+|+.|++..........+++++.++.++.+.
T Consensus        80 ----~~Divi~at~~~~~~~~~~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           80 ----NNDVIITATSSKTPIVEERSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             ----TCSEEEECSCCSSCSBCGGGCCTTCEEEECCSSC
T ss_pred             ----CCCEEEEeCCCCCcEeeHHHcCCCCEEEEccCCc
Confidence                3899999998642111236788899999988754

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.27  E-value=2.1e-06  Score=67.72  Aligned_cols=103  Identities=17%  Similarity=0.071  Sum_probs=74.3

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee-e--------cCCc--c----cHHHHHHH
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF-N--------YKEE--T----DLKATLKR   98 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~-~--------~~~~--~----~~~~~i~~   98 (223)
                      ++.+|+|.  |.+|..+++.++.+|++|++.++++++.+.++ ++|++.+. +        |...  .    ...+.+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~-~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVR-SVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH-HTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            67899999  99999999999999999999999999999998 78875431 1        0000  0    00112222


Q ss_pred             hCCCCccEEEcCCCh-----H--HHHHHHHhhccCcEEEEEcccccccc
Q 043295           99 YFPDGIDVYFDNVGG-----E--MLEAAVANMNLFGRVAACGVISECAD  140 (223)
Q Consensus        99 ~~~~~~d~vid~~g~-----~--~~~~~~~~l~~~G~~v~~g~~~~~~~  140 (223)
                      .. .+.|+||.|+.-     +  .....+..+++++.++.++...+.+.
T Consensus       262 ~l-~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~  309 (381)
T 3p2y_A          262 AI-TKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNC  309 (381)
T ss_dssp             HH-TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred             HH-hcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCcc
Confidence            22 259999998631     1  24688899999999999997766543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.21  E-value=9.6e-06  Score=65.12  Aligned_cols=108  Identities=16%  Similarity=0.138  Sum_probs=76.6

Q ss_pred             ccccchhhHHHHHHHHh-----hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHH-HHHHHhhCCCeeeecCC
Q 043295           18 GAGTSGFTAYVGFYEIS-----QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKV-AILKEKLGFDDAFNYKE   88 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~-----~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~-~~~~~~~g~~~~~~~~~   88 (223)
                      ....++.++|.++....     .+|++|+|+  |++|.++++.++..|+ +|+++.+++++. +.++ ++|++ ++++. 
T Consensus       143 ~~~~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~-~~g~~-~~~~~-  219 (404)
T 1gpj_A          143 ISEGAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELAR-DLGGE-AVRFD-  219 (404)
T ss_dssp             TTCSCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH-HHTCE-ECCGG-
T ss_pred             hcCCCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HcCCc-eecHH-
Confidence            34456778888775533     479999999  9999999999999999 999999999886 5555 88875 34332 


Q ss_pred             cccHHHHHHHhCCCCccEEEcCCChH-HH--HHHHHh--h--ccCcEEEEEccc
Q 043295           89 ETDLKATLKRYFPDGIDVYFDNVGGE-ML--EAAVAN--M--NLFGRVAACGVI  135 (223)
Q Consensus        89 ~~~~~~~i~~~~~~~~d~vid~~g~~-~~--~~~~~~--l--~~~G~~v~~g~~  135 (223)
                        ++.+.+.     ++|+|++|++.. .+  ...+..  +  +++|.++.++..
T Consensus       220 --~l~~~l~-----~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          220 --ELVDHLA-----RSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             --GHHHHHH-----TCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             --hHHHHhc-----CCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence              3444332     499999999853 21  134554  4  556777666653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.15  E-value=9.6e-06  Score=64.53  Aligned_cols=102  Identities=17%  Similarity=0.113  Sum_probs=72.6

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeee-------------cCC--cccH----HH
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFN-------------YKE--ETDL----KA   94 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~-------------~~~--~~~~----~~   94 (223)
                      ++.+|+|.  |.+|..++++++.+|++|++.++++.+++.++ ++|++.+..             |..  .+++    .+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~-~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVA-SLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH-HTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            67899999  99999999999999999999999999999998 788753211             110  0011    11


Q ss_pred             HHHHhCCCCccEEEcCCC--h---H--HHHHHHHhhccCcEEEEEccccccc
Q 043295           95 TLKRYFPDGIDVYFDNVG--G---E--MLEAAVANMNLFGRVAACGVISECA  139 (223)
Q Consensus        95 ~i~~~~~~~~d~vid~~g--~---~--~~~~~~~~l~~~G~~v~~g~~~~~~  139 (223)
                      .+.+... +.|+||.|+.  +   +  ..+..+..+++++.+|.++...+.+
T Consensus       268 ~l~e~l~-~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~  318 (405)
T 4dio_A          268 LVAEHIA-KQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGN  318 (405)
T ss_dssp             HHHHHHH-TCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred             HHHHHhc-CCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCC
Confidence            2222211 5999999963  1   1  2467889999999999998755433

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.94  E-value=4.4e-05  Score=61.00  Aligned_cols=99  Identities=17%  Similarity=0.154  Sum_probs=73.7

Q ss_pred             hHHHHHHHHh---hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHh
Q 043295           25 TAYVGFYEIS---QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRY   99 (223)
Q Consensus        25 ta~~~l~~~~---~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~   99 (223)
                      ..+.++.+..   -.|++|+|.  |.+|..+++.++..|++|+++.+++.+...+. ..|... .      ++.+.+.  
T Consensus       205 s~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~-~~G~~v-~------~Leeal~--  274 (435)
T 3gvp_A          205 SILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC-MDGFRL-V------KLNEVIR--  274 (435)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEE-C------CHHHHTT--
T ss_pred             HHHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH-HcCCEe-c------cHHHHHh--
Confidence            4445555544   579999999  99999999999999999999998887766666 566421 1      3333332  


Q ss_pred             CCCCccEEEcCCChH-HH-HHHHHhhccCcEEEEEcccc
Q 043295          100 FPDGIDVYFDNVGGE-ML-EAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       100 ~~~~~d~vid~~g~~-~~-~~~~~~l~~~G~~v~~g~~~  136 (223)
                         ..|+++.|.|.. .+ ...+..|++++.++.+|...
T Consensus       275 ---~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~  310 (435)
T 3gvp_A          275 ---QVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSN  310 (435)
T ss_dssp             ---TCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTT
T ss_pred             ---cCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCC
Confidence               489999998753 33 37889999999999998643

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.87  E-value=0.00012  Score=58.77  Aligned_cols=98  Identities=16%  Similarity=0.107  Sum_probs=72.3

Q ss_pred             HHHHHHHHh---hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhC
Q 043295           26 AYVGFYEIS---QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYF  100 (223)
Q Consensus        26 a~~~l~~~~---~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~  100 (223)
                      .+.++.+..   -.|++|+|.  |.+|..+++.++..|++|+++.+++.+..... ..|... .      ++.+.++   
T Consensus       233 lvdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-~~G~~v-v------~LeElL~---  301 (464)
T 3n58_A          233 LVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA-MDGFEV-V------TLDDAAS---  301 (464)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-HTTCEE-C------CHHHHGG---
T ss_pred             HHHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-hcCcee-c------cHHHHHh---
Confidence            344444433   689999999  99999999999999999999998877655555 556532 1      2333332   


Q ss_pred             CCCccEEEcCCChH-H-HHHHHHhhccCcEEEEEcccc
Q 043295          101 PDGIDVYFDNVGGE-M-LEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       101 ~~~~d~vid~~g~~-~-~~~~~~~l~~~G~~v~~g~~~  136 (223)
                        ..|+++.+.|.. . -...+..|++++.++.+|...
T Consensus       302 --~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          302 --TADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             --GCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSST
T ss_pred             --hCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCC
Confidence              389999998864 2 257889999999999888543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.81  E-value=0.00022  Score=54.45  Aligned_cols=95  Identities=14%  Similarity=0.047  Sum_probs=67.4

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      +++++||..  |+.|..++.+|+..|++|++++.+++..+.+++.   .|.+.+ ..... +..+    ...+.||+|+-
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v-~~v~g-Da~~----l~d~~FDvV~~  194 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGV-NVITG-DETV----IDGLEFDVLMV  194 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSE-EEEES-CGGG----GGGCCCSEEEE
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCe-EEEEC-chhh----CCCCCcCEEEE
Confidence            899999999  5566777888888899999999999988888732   354332 11111 1111    22347999986


Q ss_pred             CCCh----HHHHHHHHhhccCcEEEEEccc
Q 043295          110 NVGG----EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       110 ~~g~----~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      ....    ..+..+.+.|+|||+++.....
T Consensus       195 ~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          195 AALAEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             CTTCSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CCCccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            5442    3688899999999999987643

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.77  E-value=5e-05  Score=56.51  Aligned_cols=101  Identities=14%  Similarity=0.114  Sum_probs=71.9

Q ss_pred             HHHHHHHh-hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCC-CeeeecCCcccHHHHHHHhC
Q 043295           27 YVGFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGF-DDAFNYKEETDLKATLKRYF  100 (223)
Q Consensus        27 ~~~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~-~~~~~~~~~~~~~~~i~~~~  100 (223)
                      .+.+.... .++++||.. .+.|..+.++++. +.+|++++.+++..+.+++.   .+. ..+ ..... +..    +..
T Consensus        81 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~-d~~----~~~  153 (248)
T 2yvl_A           81 FYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNV-KFFNV-DFK----DAE  153 (248)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTE-EEECS-CTT----TSC
T ss_pred             HHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcE-EEEEc-Chh----hcc
Confidence            34454445 789999999 6689999999999 88999999999988887732   243 222 11111 111    122


Q ss_pred             -CC-CccEEEcCCCh--HHHHHHHHhhccCcEEEEEcc
Q 043295          101 -PD-GIDVYFDNVGG--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       101 -~~-~~d~vid~~g~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                       .+ ++|+|+...+.  ..+..+.+.|+++|+++....
T Consensus       154 ~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          154 VPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             CCTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             cCCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence             33 79999987764  468889999999999988754

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.76  E-value=0.0002  Score=46.57  Aligned_cols=91  Identities=16%  Similarity=0.162  Sum_probs=61.7

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      .+.+|+|.  |.+|..+++.+...| .+|+++++++++.+.+. ..+...+ .|..+.    +.+.+... ++|+||+|+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-~~~~~~~~~d~~~~----~~~~~~~~-~~d~vi~~~   77 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-RMGVATKQVDAKDE----AGLAKALG-GFDAVISAA   77 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-TTTCEEEECCTTCH----HHHHHHTT-TCSEEEECS
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hCCCcEEEecCCCH----HHHHHHHc-CCCEEEECC
Confidence            35688898  899999999999999 79999999999888887 6665432 333322    23333332 599999999


Q ss_pred             ChHHHHHHH-HhhccCcEEEEE
Q 043295          112 GGEMLEAAV-ANMNLFGRVAAC  132 (223)
Q Consensus       112 g~~~~~~~~-~~l~~~G~~v~~  132 (223)
                      +........ .+...+..++.+
T Consensus        78 ~~~~~~~~~~~~~~~g~~~~~~   99 (118)
T 3ic5_A           78 PFFLTPIIAKAAKAAGAHYFDL   99 (118)
T ss_dssp             CGGGHHHHHHHHHHTTCEEECC
T ss_pred             CchhhHHHHHHHHHhCCCEEEe
Confidence            864333333 344555555544

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.67  E-value=0.00023  Score=54.53  Aligned_cols=90  Identities=20%  Similarity=0.234  Sum_probs=68.7

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -+|++|+|.  |.+|..+++.++..|++|++.+++.++.+.+. ++|+.. ++..   ++.+.+     ...|+|+.++.
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~-~~~~---~l~~~l-----~~aDvVi~~~p  222 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-EMGMEP-FHIS---KAAQEL-----RDVDVCINTIP  222 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTSEE-EEGG---GHHHHT-----TTCSEEEECCS
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HCCCee-cChh---hHHHHh-----cCCCEEEECCC
Confidence            468999999  99999999999999999999999988877777 778643 2221   333322     24899999987


Q ss_pred             hHH-HHHHHHhhccCcEEEEEcc
Q 043295          113 GEM-LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 ~~~-~~~~~~~l~~~G~~v~~g~  134 (223)
                      ... -...+..+++++.++.++.
T Consensus       223 ~~~i~~~~l~~mk~~~~lin~ar  245 (293)
T 3d4o_A          223 ALVVTANVLAEMPSHTFVIDLAS  245 (293)
T ss_dssp             SCCBCHHHHHHSCTTCEEEECSS
T ss_pred             hHHhCHHHHHhcCCCCEEEEecC
Confidence            422 2356778999999999885

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.65  E-value=0.00038  Score=55.81  Aligned_cols=106  Identities=11%  Similarity=0.076  Sum_probs=75.4

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -.|++|.|.  |.+|...++.++..|++|+++++++.+...+. ..|...+       ++.+.+.     ..|+++.+.+
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-~~G~~~~-------sL~eal~-----~ADVVilt~g  275 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAA-MEGYQVL-------LVEDVVE-----EAHIFVTTTG  275 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEEC-------CHHHHTT-----TCSEEEECSS
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-HhCCeec-------CHHHHHh-----hCCEEEECCC
Confidence            468999999  99999999999999999999999887766666 5665321       3433332     3899998887


Q ss_pred             hH-HH-HHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEe
Q 043295          113 GE-ML-EAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQG  161 (223)
Q Consensus       113 ~~-~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g  161 (223)
                      .. .+ ...+..|++++.++.++...        ..++...+..+..++.+
T Consensus       276 t~~iI~~e~l~~MK~gAIVINvgRg~--------vEID~~~L~~~~~~~~~  318 (436)
T 3h9u_A          276 NDDIITSEHFPRMRDDAIVCNIGHFD--------TEIQVAWLKANAKERVE  318 (436)
T ss_dssp             CSCSBCTTTGGGCCTTEEEEECSSSG--------GGBCHHHHHHHCSEEEE
T ss_pred             CcCccCHHHHhhcCCCcEEEEeCCCC--------CccCHHHHHhhcCceEe
Confidence            53 22 35678899999999887432        13455555554444443

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.65  E-value=0.00024  Score=53.24  Aligned_cols=103  Identities=15%  Similarity=0.139  Sum_probs=67.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .++++||+   +++|.+.++.....|++|+.+++++++.+.+.++++....   .|-.+.++....+.+...  +++|++
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   86 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLL   86 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            57899999   8999999998888999999999999888777656654221   233333122222222211  369999


Q ss_pred             EcCCCh-----------HHH---------------HHHHHhhccCcEEEEEcccccc
Q 043295          108 FDNVGG-----------EML---------------EAAVANMNLFGRVAACGVISEC  138 (223)
Q Consensus       108 id~~g~-----------~~~---------------~~~~~~l~~~G~~v~~g~~~~~  138 (223)
                      +++.|-           +.+               +.++..++++|+++.++.....
T Consensus        87 v~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~  143 (255)
T 4eso_A           87 HINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADE  143 (255)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGS
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhc
Confidence            998862           111               1223445567999998876543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.64  E-value=0.00097  Score=47.15  Aligned_cols=91  Identities=14%  Similarity=0.111  Sum_probs=62.8

Q ss_pred             CCEEEEE--CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCeee-ecCCcccHHHHHHHhCC-CCccEEEcCC
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDDAF-NYKEETDLKATLKRYFP-DGIDVYFDNV  111 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~-~~~d~vid~~  111 (223)
                      +++|+|.  |.+|..+++.++.. |.+|+++++++++.+.++ +.|...+. |..+.    +.+.+.++ .++|+++.++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~-~~g~~~~~gd~~~~----~~l~~~~~~~~ad~vi~~~  113 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHR-SEGRNVISGDATDP----DFWERILDTGHVKLVLLAM  113 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH-HTTCCEEECCTTCH----HHHHTBCSCCCCCEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH-HCCCCEEEcCCCCH----HHHHhccCCCCCCEEEEeC
Confidence            5578888  99999999999998 999999999999988888 77875443 33222    23344322 3799999999


Q ss_pred             ChH-HHHHH---HHhhccCcEEEEE
Q 043295          112 GGE-MLEAA---VANMNLFGRVAAC  132 (223)
Q Consensus       112 g~~-~~~~~---~~~l~~~G~~v~~  132 (223)
                      +++ .....   .+.+.+...++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          114 PHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             SSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CChHHHHHHHHHHHHHCCCCEEEEE
Confidence            864 22222   3344445566654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.58  E-value=0.00029  Score=53.36  Aligned_cols=103  Identities=16%  Similarity=0.182  Sum_probs=71.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      +|+.+||+   +++|.+.++.....|++|+.+++++++++.+.+++|....   .|-.+.++..+.+.+...  |++|++
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL  107 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDVL  107 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            68899999   7999999999999999999999999998877768876332   233333122222232222  369999


Q ss_pred             EcCCCh-----------HHHH---------------HHHHhhccCcEEEEEcccccc
Q 043295          108 FDNVGG-----------EMLE---------------AAVANMNLFGRVAACGVISEC  138 (223)
Q Consensus       108 id~~g~-----------~~~~---------------~~~~~l~~~G~~v~~g~~~~~  138 (223)
                      +++.|.           +.++               .++..|+.+|++|.++...+.
T Consensus       108 VNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~  164 (273)
T 4fgs_A          108 FVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGS  164 (273)
T ss_dssp             EECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGG
T ss_pred             EECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhc
Confidence            998863           1122               234567778999998876553

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.54  E-value=0.00025  Score=48.84  Aligned_cols=88  Identities=18%  Similarity=0.110  Sum_probs=57.9

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      .++++|+|.  |.+|..+++.++..|.+|+++++++++.+.+++..|.. ++..+.. + .+.+.+..-.++|+||.|++
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~-~~~~d~~-~-~~~l~~~~~~~ad~Vi~~~~   93 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGF-TVVGDAA-E-FETLKECGMEKADMVFAFTN   93 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSE-EEESCTT-S-HHHHHTTTGGGCSEEEECSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCc-EEEecCC-C-HHHHHHcCcccCCEEEEEeC
Confidence            678899999  99999999999999999999999988776554124443 3322221 2 22333321127999999999


Q ss_pred             hHH-HHHHHHhhcc
Q 043295          113 GEM-LEAAVANMNL  125 (223)
Q Consensus       113 ~~~-~~~~~~~l~~  125 (223)
                      .+. .......++.
T Consensus        94 ~~~~~~~~~~~~~~  107 (155)
T 2g1u_A           94 DDSTNFFISMNARY  107 (155)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHH
Confidence            743 3333344443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.53  E-value=0.0004  Score=53.36  Aligned_cols=91  Identities=18%  Similarity=0.253  Sum_probs=68.9

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -++++|+|.  |.+|..+++.++..|++|++.+++.++.+.+. ++|.. ++++.   ++.+.+     ...|+|+.++.
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~-~~~~~---~l~~~l-----~~aDvVi~~~p  224 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARIT-EMGLV-PFHTD---ELKEHV-----KDIDICINTIP  224 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCE-EEEGG---GHHHHS-----TTCSEEEECCS
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HCCCe-EEchh---hHHHHh-----hCCCEEEECCC
Confidence            568899999  99999999999999999999999988877776 67763 33221   333322     24899999987


Q ss_pred             hHH-HHHHHHhhccCcEEEEEccc
Q 043295          113 GEM-LEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       113 ~~~-~~~~~~~l~~~G~~v~~g~~  135 (223)
                      ... -...+..+++++.++.++..
T Consensus       225 ~~~i~~~~~~~mk~g~~lin~a~g  248 (300)
T 2rir_A          225 SMILNQTVLSSMTPKTLILDLASR  248 (300)
T ss_dssp             SCCBCHHHHTTSCTTCEEEECSST
T ss_pred             hhhhCHHHHHhCCCCCEEEEEeCC
Confidence            532 23467789999999998863

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.49  E-value=0.0017  Score=47.78  Aligned_cols=98  Identities=15%  Similarity=0.079  Sum_probs=68.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhC--C--CCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYF--P--DGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~--~--~~~  104 (223)
                      .++++||-. ++.|..+..+++..  +.+|++++.+++..+.+++.   .|....+..... +..+.+....  +  +.|
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~l~~l~~~~~~~~f  149 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLG-PALATLEQLTQGKPLPEF  149 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-CHHHHHHHHHTSSSCCCE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHHhcCCCCCc
Confidence            677899888 88999999999987  56999999999988777632   355322222222 3444444432  1  469


Q ss_pred             cEEE-cCCCh---HHHHHHHHhhccCcEEEEEc
Q 043295          105 DVYF-DNVGG---EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       105 d~vi-d~~g~---~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+|| |....   ..+..+.++|++||.++.-.
T Consensus       150 D~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          150 DLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             CEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            9998 44432   35788899999999998743

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.47  E-value=0.0014  Score=48.18  Aligned_cols=97  Identities=11%  Similarity=0.052  Sum_probs=67.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhC-CCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYF-PDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~-~~~~d~vi  108 (223)
                      .++.+||-. ++.|..+..+++.. +.+|++++.++...+.+++.   .|...-+..... +..+.+.... ++.+|+|+
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~fD~I~  131 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFG-DALQLGEKLELYPLFDVLF  131 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-CGGGSHHHHTTSCCEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-CHHHHHHhcccCCCccEEE
Confidence            788999999 78999999999988 67999999999988877733   254221111111 2222222222 23799998


Q ss_pred             cCCCh----HHHHHHHHhhccCcEEEEE
Q 043295          109 DNVGG----EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       109 d~~g~----~~~~~~~~~l~~~G~~v~~  132 (223)
                      .....    ..+..+.+.|++||.++..
T Consensus       132 ~~~~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          132 IDAAKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            65542    4577888999999999875

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.46  E-value=0.00061  Score=50.68  Aligned_cols=76  Identities=17%  Similarity=0.280  Sum_probs=53.4

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee---ecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF---NYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      .+++++||+   |++|.+.++.....|++|+.++++.++.+.+.++++....+   |..+.+.+.+.+.+.  +++|+++
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~id~li   89 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKT--SNLDILV   89 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTC--SCCSEEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhc--CCCCEEE
Confidence            578899999   89999999888889999999999998887776556543322   323221222222221  3699999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        90 ~~Ag   93 (249)
T 3f9i_A           90 CNAG   93 (249)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9887

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.45  E-value=0.00065  Score=55.32  Aligned_cols=88  Identities=16%  Similarity=0.210  Sum_probs=67.2

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -.|++++|.  |++|...++.++..|++|+++++++.+...+. ..|++ +.+..   +.        -..+|+++++.|
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa-~~g~d-v~~le---e~--------~~~aDvVi~atG  329 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQAT-MEGLQ-VLTLE---DV--------VSEADIFVTTTG  329 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-ECCGG---GT--------TTTCSEEEECSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HhCCc-cCCHH---HH--------HHhcCEEEeCCC
Confidence            478999999  99999999999999999999999988877776 56652 21111   11        114899999998


Q ss_pred             h-HHH-HHHHHhhccCcEEEEEccc
Q 043295          113 G-EML-EAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       113 ~-~~~-~~~~~~l~~~G~~v~~g~~  135 (223)
                      . +.+ ...+..+++++.++.+|..
T Consensus       330 ~~~vl~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          330 NKDIIMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             CSCSBCHHHHTTSCTTEEEEESSST
T ss_pred             ChhhhhHHHHHhcCCCeEEEEcCCC
Confidence            6 333 3478899999999988854

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.41  E-value=0.0016  Score=46.93  Aligned_cols=101  Identities=14%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             HHHHHh-hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCC-eeeecCCcccHHHHHHHhCCC
Q 043295           29 GFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFD-DAFNYKEETDLKATLKRYFPD  102 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~~~~~~~~~~~~~~i~~~~~~  102 (223)
                      .+.... .++++||-. .|.|..+..+++. +.+|++++.+++..+.+++.   +|.. .+- .... +..+.+..  .+
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~-~~~~-d~~~~~~~--~~  121 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMR-AVQG-TAPAALAD--LP  121 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEE-EEES-CTTGGGTT--SC
T ss_pred             HHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEE-EEeC-chhhhccc--CC
Confidence            344444 788999988 7779999999998 88999999999988877632   3554 221 1111 11111111  12


Q ss_pred             CccEEEcCCCh--HHHHHHHHhhccCcEEEEEcc
Q 043295          103 GIDVYFDNVGG--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       103 ~~d~vid~~g~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .+|+|+...+.  +.+..+.+.|+++|+++....
T Consensus       122 ~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          122 LPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             CCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CCCEEEECCcccHHHHHHHHHhcCCCcEEEEEec
Confidence            69999866542  267888899999999988654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.41  E-value=0.0027  Score=42.78  Aligned_cols=91  Identities=13%  Similarity=0.109  Sum_probs=63.4

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee-ecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF-NYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .++|+|.  |.+|..+++.++..|.+|+++++++++.+.++ +.|...+. |..+    .+.+++..-.++|.++-+++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~-~~g~~~i~gd~~~----~~~l~~a~i~~ad~vi~~~~~   81 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELR-ERGVRAVLGNAAN----EEIMQLAHLECAKWLILTIPN   81 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH-HTTCEEEESCTTS----HHHHHHTTGGGCSEEEECCSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-HcCCCEEECCCCC----HHHHHhcCcccCCEEEEECCC
Confidence            3578888  99999999999999999999999999999998 77775433 2222    222333211269999999986


Q ss_pred             HH----HHHHHHhhccCcEEEEE
Q 043295          114 EM----LEAAVANMNLFGRVAAC  132 (223)
Q Consensus       114 ~~----~~~~~~~l~~~G~~v~~  132 (223)
                      +.    .-...+.+.++.+++.-
T Consensus        82 ~~~n~~~~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           82 GYEAGEIVASARAKNPDIEIIAR  104 (140)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             hHHHHHHHHHHHHHCCCCeEEEE
Confidence            42    22334455666766654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.40  E-value=0.0032  Score=46.84  Aligned_cols=98  Identities=12%  Similarity=0.054  Sum_probs=68.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCC-CccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPD-GIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~-~~d~v  107 (223)
                      .++.+||-. ++.|..+..+++..  +.+|++++.+++..+.+++.   .|...-+..... +..+.+....+. .||+|
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREG-PALQSLESLGECPAFDLI  140 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHTCCSCCCCSEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHhcCCCCCeEEE
Confidence            788999999 88899999999987  56999999999988877733   255321222222 444444444333 79999


Q ss_pred             E-cCCCh---HHHHHHHHhhccCcEEEEEc
Q 043295          108 F-DNVGG---EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       108 i-d~~g~---~~~~~~~~~l~~~G~~v~~g  133 (223)
                      + |+.-.   ..+..+.++|++||.++.-.
T Consensus       141 ~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          141 FIDADKPNNPHYLRWALRYSRPGTLIIGDN  170 (248)
T ss_dssp             EECSCGGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             EECCchHHHHHHHHHHHHhcCCCeEEEEeC
Confidence            8 33322   36788899999999888654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.39  E-value=0.00061  Score=50.40  Aligned_cols=97  Identities=9%  Similarity=-0.074  Sum_probs=66.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe--eeecCCcccHHHHHHHhCCCCccEE-EcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD--AFNYKEETDLKATLKRYFPDGIDVY-FDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~i~~~~~~~~d~v-id~  110 (223)
                      .+|.+||-. .|.|..+..+++..+.+|+++..++.-.+.++ +.....  -+..... +..+.......+.||.| +|+
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~-~~~~~~~~~~~~~~~-~a~~~~~~~~~~~FD~i~~D~  136 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKG-LWEDVAPTLPDGHFDGILYDT  136 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEES-CHHHHGGGSCTTCEEEEEECC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHH-HHHhhCCCceEEEee-hHHhhcccccccCCceEEEee
Confidence            889999999 88999999999887789999999999888888 433211  0111111 33333333333479987 565


Q ss_pred             CCh-----------HHHHHHHHhhccCcEEEEEc
Q 043295          111 VGG-----------EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       111 ~g~-----------~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ...           ..+..+.++|+|||+++.+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             eecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            431           13566788999999998764

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.36  E-value=0.004  Score=45.95  Aligned_cols=98  Identities=12%  Similarity=0.088  Sum_probs=68.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhC--------
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYF--------  100 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~--------  100 (223)
                      .++++||-. ++.|..+..+++..  +.+|++++.++...+.+++.   .|....+..... +..+.+....        
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~-d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLG-SALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHCSSCCGG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC-CHHHHHHHHHhhcccccc
Confidence            788999999 78899999999987  57999999999888777733   354331222222 3333333221        


Q ss_pred             ------C-CCccEEEcCCCh----HHHHHHHHhhccCcEEEEEc
Q 043295          101 ------P-DGIDVYFDNVGG----EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       101 ------~-~~~d~vid~~g~----~~~~~~~~~l~~~G~~v~~g  133 (223)
                            + +.||+|+...+.    ..+..+.++|++||.++...
T Consensus       138 ~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence                  2 469999876553    35678889999999998753

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.32  E-value=0.00096  Score=49.66  Aligned_cols=77  Identities=18%  Similarity=0.265  Sum_probs=53.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .++++||+   +++|.+.++.....|++|+.+++++++.+.+.++++....   .|-.+.++..+.+.+...  +++|++
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   84 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDIL   84 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            57889999   8999999999999999999999999887776656665322   233333122222222221  269999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        85 v~nAg   89 (247)
T 3rwb_A           85 VNNAS   89 (247)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99887

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.31  E-value=0.00094  Score=49.61  Aligned_cols=77  Identities=12%  Similarity=0.170  Sum_probs=52.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCC--CCccEEEc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFP--DGIDVYFD  109 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~--~~~d~vid  109 (223)
                      .+++++|+   |++|.+.++.....|++|+.+++++++.+.+.+++|...+ .|-.+.++..+.+.+...  +++|++++
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lvn   83 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            46789999   8999999998888999999999998887766545563222 344433123332332221  36999999


Q ss_pred             CCC
Q 043295          110 NVG  112 (223)
Q Consensus       110 ~~g  112 (223)
                      +.|
T Consensus        84 ~Ag   86 (245)
T 1uls_A           84 YAG   86 (245)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            987

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.31  E-value=0.0089  Score=43.63  Aligned_cols=96  Identities=13%  Similarity=0.048  Sum_probs=66.3

Q ss_pred             CCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHh---hCCC-eeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           36 KGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEK---LGFD-DAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        36 ~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~---~g~~-~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      ++.+||-. ++.|..+..+++..  +.+|++++.+++..+.+++.   .|.. .-+..... +..+.+....++.||+||
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g-da~~~l~~~~~~~fD~V~  134 (221)
T 3dr5_A           56 GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS-RPLDVMSRLANDSYQLVF  134 (221)
T ss_dssp             TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS-CHHHHGGGSCTTCEEEEE
T ss_pred             CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc-CHHHHHHHhcCCCcCeEE
Confidence            34488877 89999999999986  67999999999988777632   3443 22222222 344444333245799997


Q ss_pred             cCCC-h---HHHHHHHHhhccCcEEEEE
Q 043295          109 DNVG-G---EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       109 d~~g-~---~~~~~~~~~l~~~G~~v~~  132 (223)
                      -... .   ..+..++++|++||.++.-
T Consensus       135 ~d~~~~~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          135 GQVSPMDLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             ECCCTTTHHHHHHHHHHHEEEEEEEEET
T ss_pred             EcCcHHHHHHHHHHHHHHcCCCcEEEEe
Confidence            5433 2   3578889999999999874

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.28  E-value=0.0011  Score=49.67  Aligned_cols=77  Identities=17%  Similarity=0.320  Sum_probs=53.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .++++||+   +++|.+.++.....|++|+.+++++++.+.+.++++....   .|-.+.++..+.+.+...  +++|++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   87 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDIL   87 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            56889999   7999999988888999999999999988877656664322   233333123333332221  269999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        88 i~~Ag   92 (261)
T 3n74_A           88 VNNAG   92 (261)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99876

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.27  E-value=0.0011  Score=50.56  Aligned_cols=76  Identities=13%  Similarity=0.202  Sum_probs=53.8

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      -++++++|+   |++|.+.++.....|++|+.++++.++.+.+.++++....   .|-.+.++..+.+.+.  +++|+++
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~--~~iD~lv   91 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGV--SGADVLI   91 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTC--CCEEEEE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhc--CCCCEEE
Confidence            467899999   8999999998888999999999999888777645543221   2333331222223322  4799999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        92 ~nAg   95 (291)
T 3rd5_A           92 NNAG   95 (291)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            9887

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.26  E-value=0.0012  Score=49.43  Aligned_cols=77  Identities=13%  Similarity=0.231  Sum_probs=53.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .++++||+   |++|.+.++.....|++|+.++++.++.+.+.++++....   .|-.+.++..+.+.+...  +++|++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   86 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDIL   86 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            57889999   8999999988888999999999998887776656654322   243333123333332221  369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        87 v~~Ag   91 (259)
T 4e6p_A           87 VNNAA   91 (259)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99887

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.24  E-value=0.004  Score=46.77  Aligned_cols=102  Identities=17%  Similarity=0.191  Sum_probs=63.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC----Ce--e--eecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF----DD--A--FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~----~~--~--~~~~~~~~~~~~i~~~~~--~  102 (223)
                      .+++++|+   |++|.+.++.....|++|+.+++++++.+.+.+++..    ..  .  .|-.+.+++.+.+.+...  +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            46789999   8999999998888999999999998776554323321    11  1  233333123333322211  3


Q ss_pred             CccEEEcCCCh---H----HH-----------HHHHHhhcc-----CcEEEEEccccc
Q 043295          103 GIDVYFDNVGG---E----ML-----------EAAVANMNL-----FGRVAACGVISE  137 (223)
Q Consensus       103 ~~d~vid~~g~---~----~~-----------~~~~~~l~~-----~G~~v~~g~~~~  137 (223)
                      ++|+++++.|.   +    .+           ...+..+..     .|+++.++....
T Consensus        86 ~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~  143 (267)
T 2gdz_A           86 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAG  143 (267)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGG
T ss_pred             CCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccc
Confidence            69999999872   1    11           223344433     588998887654

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.23  E-value=0.00082  Score=50.05  Aligned_cols=77  Identities=23%  Similarity=0.421  Sum_probs=53.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC---eeeecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD---DAFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .++++||+   +++|.+.++.....|++|+.+++++++.+.+.++++..   ...|-.+.++..+.+.+...  +++|++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   87 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDIL   87 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            57889999   89999999998899999999999998877666455432   12344443223333332222  369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        88 v~nAg   92 (248)
T 3op4_A           88 VNNAG   92 (248)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99887

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.23  E-value=0.007  Score=44.66  Aligned_cols=97  Identities=16%  Similarity=0.035  Sum_probs=66.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhC-----CCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYF-----PDG  103 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~-----~~~  103 (223)
                      .++++||-. ++.|..+..+++..  +.+|++++.+++..+.+++.   .|...-+..... +..+.+....     .+.
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g-da~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIES-DAMLALDNLLQGQESEGS  147 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHSTTCTTC
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHHhccCCCCC
Confidence            677889888 88999999999986  57999999999988777632   355322222222 3333333331     347


Q ss_pred             ccEEEcCCCh----HHHHHHHHhhccCcEEEEE
Q 043295          104 IDVYFDNVGG----EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       104 ~d~vid~~g~----~~~~~~~~~l~~~G~~v~~  132 (223)
                      ||+||-....    ..++.+.++|++||.++.-
T Consensus       148 fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          148 YDFGFVDADKPNYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             EEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence            9998744332    3578888999999998764

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.22  E-value=0.0017  Score=48.84  Aligned_cols=78  Identities=23%  Similarity=0.342  Sum_probs=54.5

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~  106 (223)
                      -.++++||+   |++|.+.++.....|++|+.++++.++.+.+.++++....   .|-.+.++..+.+.+...  +++|+
T Consensus        25 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (266)
T 3grp_A           25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDI  104 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence            457899999   8999999999889999999999999887776656765322   233333122222222221  36999


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ++++.|
T Consensus       105 lvnnAg  110 (266)
T 3grp_A          105 LVNNAG  110 (266)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999987

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.20  E-value=0.0012  Score=50.04  Aligned_cols=78  Identities=21%  Similarity=0.327  Sum_probs=54.0

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~  106 (223)
                      -.++++||+   |++|.+.++.....|++|+.+++++++.+.+.++++....   .|-.+.++..+.+.+...  +++|+
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  106 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDK  106 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            357889999   8999999998888999999999998887776656654222   244443122222322221  26999


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ++++.|
T Consensus       107 lvnnAg  112 (277)
T 3gvc_A          107 LVANAG  112 (277)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999887

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.20  E-value=0.0055  Score=45.21  Aligned_cols=73  Identities=18%  Similarity=0.199  Sum_probs=50.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee--ecCCcccHHHHHHHhCC--CCccEEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF--NYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      ++++++|+   |++|.+.++.....|++|+.+++++++.+.+.+++....++  |-.+.    +.+.+...  +++|++|
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~~~~~~~~id~vi   81 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDW----EATERALGSVGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCH----HHHHHHHTTCCCCCEEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCH----HHHHHHHHHcCCCCEEE
Confidence            56889999   89999999988889999999999988777665344322222  33332    22333222  3699999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        82 ~~Ag   85 (244)
T 3d3w_A           82 NNAA   85 (244)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            9887

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.19  E-value=0.0012  Score=49.37  Aligned_cols=77  Identities=21%  Similarity=0.236  Sum_probs=52.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe---eeecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD---AFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.++++...   ..|-.+.+++.+.+.+...  +++|++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   83 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46789999   899999999888899999999999887776654554321   1243333133333332222  269999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        84 v~nAg   88 (254)
T 1hdc_A           84 VNNAG   88 (254)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99887

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.19  E-value=0.0015  Score=49.49  Aligned_cols=78  Identities=15%  Similarity=0.275  Sum_probs=54.4

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~  106 (223)
                      -.++++||+   |++|.+.++.....|++|+.+++++++.+.+.++++....   .|-.+.++..+.+.+...  +++|+
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDV  104 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467899999   8999999998888999999999999887776646664322   233333122222332221  26999


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ++++.|
T Consensus       105 lv~nAg  110 (277)
T 4dqx_A          105 LVNNAG  110 (277)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999887

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.18  E-value=0.0051  Score=44.11  Aligned_cols=102  Identities=9%  Similarity=0.041  Sum_probs=68.8

Q ss_pred             HHHHHh-hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCC
Q 043295           29 GFYEIS-QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPD  102 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~  102 (223)
                      .+.... .++++||-. .|.|..+..+++.. +.+|++++.+++..+.+++.   .|.+.+--...  +..+.+..  .+
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~--~~  107 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEA--FAPEGLDD--LP  107 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEEC--CTTTTCTT--SC
T ss_pred             HHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeC--Chhhhhhc--CC
Confidence            344444 788999999 77899999999986 36999999999988877632   34432211111  11111110  13


Q ss_pred             CccEEEcCCC----hHHHHHHHHhhccCcEEEEEcc
Q 043295          103 GIDVYFDNVG----GEMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       103 ~~d~vid~~g----~~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .+|+|+....    ...+..+.+.|+++|+++....
T Consensus       108 ~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          108 DPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             CCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence            6999987654    2467888999999999998754

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.17  E-value=0.00097  Score=49.90  Aligned_cols=77  Identities=21%  Similarity=0.357  Sum_probs=52.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCee---eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDA---FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      +|+.+||+   +++|.+.++.....|++|+.+++++++.+.+.++   .|....   .|-.+.++....+.+...  |++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i   85 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI   85 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            68899999   7999999998889999999999999887665533   344322   344443233322333222  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        86 DiLVNNAG   93 (254)
T 4fn4_A           86 DVLCNNAG   93 (254)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCc
Confidence            99999876

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.17  E-value=0.0011  Score=48.91  Aligned_cols=76  Identities=11%  Similarity=0.054  Sum_probs=52.0

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe---eeecCCcccHHHHHHHhCC--CCccEEE
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD---AFNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      ++++||+   |++|.+.++.....|++|+.+++++++.+.+.++++...   ..|-.+.++..+.+.+...  +++|+++
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv   82 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVL   82 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            5789999   899999998888899999999999988877764554321   1233333123322322221  3699999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        83 nnAg   86 (235)
T 3l6e_A           83 HCAG   86 (235)
T ss_dssp             EECC
T ss_pred             ECCC
Confidence            9887

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.17  E-value=0.0015  Score=49.60  Aligned_cols=77  Identities=19%  Similarity=0.233  Sum_probs=53.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .++++||+   +++|.+.++.....|++|+.++++.++.+.+.++++....   .|-.+.++..+.+.+...  +++|++
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l   83 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTL   83 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            47889999   8999999998888999999999999888777645554222   233333122222322211  369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        84 vnnAg   88 (281)
T 3zv4_A           84 IPNAG   88 (281)
T ss_dssp             ECCCC
T ss_pred             EECCC
Confidence            99887

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.16  E-value=0.003  Score=48.36  Aligned_cols=95  Identities=11%  Similarity=0.070  Sum_probs=66.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      +++.+||-. +|.|..+..+++..|++|++++.++...+.+++.   .|...-+..... ++.    +. .+.+|+|+..
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~----~~-~~~fD~v~~~  144 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ-GWE----EF-DEPVDRIVSL  144 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC-CGG----GC-CCCCSEEEEE
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-CHH----Hc-CCCccEEEEc
Confidence            788899999 7889999999999899999999999988877732   243211111111 221    12 4479998753


Q ss_pred             C------------C----hHHHHHHHHhhccCcEEEEEccc
Q 043295          111 V------------G----GEMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       111 ~------------g----~~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .            |    ...+..+.++|+|||+++.....
T Consensus       145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  185 (302)
T 3hem_A          145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  185 (302)
T ss_dssp             SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred             chHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            2            2    13577888999999999887654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.14  E-value=0.0078  Score=43.73  Aligned_cols=98  Identities=13%  Similarity=0.041  Sum_probs=66.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhC---CCCcc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYF---PDGID  105 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~---~~~~d  105 (223)
                      .++.+||-. ++.|..+..+++..  +.+|++++.+++..+.+++.   .|....+..... +..+.+....   .+.||
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTG-LALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHHHHHTTCCCCS
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHHhcCCCCcC
Confidence            788999988 88999999999987  57999999999887777632   354321222222 3333333321   13699


Q ss_pred             EEEcCCC-h---HHHHHHHHhhccCcEEEEEc
Q 043295          106 VYFDNVG-G---EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       106 ~vid~~g-~---~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +|+-... .   ..+..+.+.|++||.++.-.
T Consensus       136 ~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          136 FIFIDADKQNNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred             EEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            9974332 2   35788889999999887653

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.14  E-value=0.0015  Score=48.64  Aligned_cols=101  Identities=16%  Similarity=0.066  Sum_probs=65.4

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEEE
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      +++|||+   +++|.+.++.....|++|+.+++++++.+.+. +-+....   .|-.+.++....+.+...  +++|+++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLV   80 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFA-KERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLV   80 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-TTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3688999   89999999999999999999999998888777 3333221   233333123332332222  3699999


Q ss_pred             cCCCh-----------HHHH---------------HHHHhh-ccCcEEEEEcccccc
Q 043295          109 DNVGG-----------EMLE---------------AAVANM-NLFGRVAACGVISEC  138 (223)
Q Consensus       109 d~~g~-----------~~~~---------------~~~~~l-~~~G~~v~~g~~~~~  138 (223)
                      ++.|.           +.++               .+...| +.+|++|.++...+.
T Consensus        81 NNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~  137 (247)
T 3ged_A           81 NNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAF  137 (247)
T ss_dssp             ECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGT
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccc
Confidence            98862           1122               123333 457999998876553

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.14  E-value=0.0032  Score=47.76  Aligned_cols=102  Identities=22%  Similarity=0.286  Sum_probs=62.8

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH-HHH----HHHhhCCCee---eecCCcccHHHHHHHhCC--
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK-VAI----LKEKLGFDDA---FNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~-~~~----~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--  101 (223)
                      -.++++||+   |++|.+.++.....|++|+.++++.++ .+.    ++ +.|....   .|-.+.++....+.+...  
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  105 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK-KNGSDAACVKANVGVVEDIVRMFEEAVKIF  105 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH-HTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHH-HhCCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            357889999   899999999888899999999987543 222    23 3343221   233333122222222211  


Q ss_pred             CCccEEEcCCCh-----------HHH---------------HHHHHhhccCcEEEEEccccc
Q 043295          102 DGIDVYFDNVGG-----------EML---------------EAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       102 ~~~d~vid~~g~-----------~~~---------------~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      +++|+++++.|.           +.+               +.+...++.+|++|.++....
T Consensus       106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  167 (283)
T 1g0o_A          106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITG  167 (283)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGG
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhh
Confidence            369999998872           111               233445556799999987554

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.13  E-value=0.0012  Score=49.85  Aligned_cols=78  Identities=14%  Similarity=0.181  Sum_probs=53.7

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~  106 (223)
                      -.++++||+   |++|.+.++.....|++|+.+++++++.+.+.++++....   .|-.+.++..+.+.+...  +++|+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   88 (271)
T 3tzq_B            9 LENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDI   88 (271)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            357899999   8999999998889999999999998877766656664322   344443122222322221  26999


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ++++.|
T Consensus        89 lv~nAg   94 (271)
T 3tzq_B           89 VDNNAA   94 (271)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999876

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.11  E-value=0.0077  Score=43.80  Aligned_cols=98  Identities=15%  Similarity=0.079  Sum_probs=66.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCC----CCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFP----DGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~----~~~  104 (223)
                      .++.+||-. ++.|..+..+++..  +.+|++++.+++..+.+++.   .|...-+..... +..+.+.....    +.|
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~f  141 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLS-PAKDTLAELIHAGQAWQY  141 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHHHHTTTCTTCE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeC-CHHHHHHHhhhccCCCCc
Confidence            678898888 88899999999986  56999999999888777633   354321222222 33344433321    469


Q ss_pred             cEEEcCCCh----HHHHHHHHhhccCcEEEEEc
Q 043295          105 DVYFDNVGG----EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       105 d~vid~~g~----~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+|+-....    ..+..+.++|++||.++.-.
T Consensus       142 D~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          142 DLIYIDADKANTDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            999843332    35778889999999998643

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.11  E-value=0.0015  Score=49.35  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=52.7

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~  106 (223)
                      ..++++||+   |++|.+.++.....|++|+.++++.++.+.+.++++....   .|-.+.++..+.+.+...  +++|+
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  105 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVDV  105 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            457888999   8999999988888999999999999887777656653221   244443123322322221  36999


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ++++.|
T Consensus       106 lVnnAg  111 (272)
T 4dyv_A          106 LFNNAG  111 (272)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999886

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.10  E-value=0.0047  Score=46.32  Aligned_cols=103  Identities=10%  Similarity=0.079  Sum_probs=62.4

Q ss_pred             CCCEEEEE---Cc--hHHHHHHHHHHcCCeEEEEecCHHHHHHHH---HhhCCCe----eeecCCcccHHHHHHHhCC--
Q 043295           36 KGEKVFVS---GA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILK---EKLGFDD----AFNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        36 ~g~~vlI~---g~--vG~~a~qla~~~g~~v~~~~~~~~~~~~~~---~~~g~~~----~~~~~~~~~~~~~i~~~~~--  101 (223)
                      .++++||+   |+  +|.+.++.....|++|+.++++++..+.+.   ++++...    ..|-.+.++..+.+.+...  
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            47889999   34  999999888888999999998865444333   1333211    1344443233333333222  


Q ss_pred             CCccEEEcCCCh---------------HH---------------HHHHHHhhccCcEEEEEcccccc
Q 043295          102 DGIDVYFDNVGG---------------EM---------------LEAAVANMNLFGRVAACGVISEC  138 (223)
Q Consensus       102 ~~~d~vid~~g~---------------~~---------------~~~~~~~l~~~G~~v~~g~~~~~  138 (223)
                      +++|+++++.|.               +.               .+.++..++++|+++.++.....
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~  152 (266)
T 3oig_A           86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGE  152 (266)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT
T ss_pred             CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccccc
Confidence            269999988762               01               11233455668999998876543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.10  E-value=0.0042  Score=43.74  Aligned_cols=97  Identities=18%  Similarity=0.171  Sum_probs=64.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      +++++||=. .|.|..+..+++. +.+|++++.+++..+.+++.   .|.+.+--...  +. +.+....++.+|+|+-.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~--~~-~~l~~~~~~~fD~v~~~   96 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILD--GH-ENLDHYVREPIRAAIFN   96 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEES--CG-GGGGGTCCSCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC--cH-HHHHhhccCCcCEEEEe
Confidence            788898888 7889999999988 88999999999988777632   34332211111  11 12222333479998755


Q ss_pred             CC-------------h---HHHHHHHHhhccCcEEEEEccc
Q 043295          111 VG-------------G---EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       111 ~g-------------~---~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .+             .   ..+..+.+.|+|||+++.+...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            21             1   2357778899999999887654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.10  E-value=0.0019  Score=48.27  Aligned_cols=77  Identities=18%  Similarity=0.245  Sum_probs=52.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC---Ce---eeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF---DD---AFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~---~~---~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .++++||+   +++|.+.++.....|++|+.+++++++.+.+.+++..   ..   ..|-.+.++..+.+.+...  +++
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   84 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRI   84 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            46789999   8999999998888999999999999887776644432   11   1243333123222332221  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        85 d~lv~nAg   92 (257)
T 3imf_A           85 DILINNAA   92 (257)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.09  E-value=0.018  Score=42.71  Aligned_cols=97  Identities=10%  Similarity=0.048  Sum_probs=66.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhC-----CCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYF-----PDG  103 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~-----~~~  103 (223)
                      .++++||-. ++.|..+..+++..  +.+|++++.+++..+.+++.   .|...-+..... +..+.+....     .+.
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~g-da~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG-PALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHSGGGTTC
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC-CHHHHHHHHHhccCCCCC
Confidence            677888888 88999999999986  67999999999887777632   354221222222 3333333331     347


Q ss_pred             ccEEEcCCC-h---HHHHHHHHhhccCcEEEEE
Q 043295          104 IDVYFDNVG-G---EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       104 ~d~vid~~g-~---~~~~~~~~~l~~~G~~v~~  132 (223)
                      ||+||-... .   ..+..+.++|++||.++.-
T Consensus       157 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          157 YDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             BSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEe
Confidence            999874332 2   3678889999999999864

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.09  E-value=0.0054  Score=46.35  Aligned_cols=78  Identities=23%  Similarity=0.377  Sum_probs=50.9

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCC-Cee----eecCCcccHHHHHHHhCC--
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGF-DDA----FNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~-~~~----~~~~~~~~~~~~i~~~~~--  101 (223)
                      -.++++||+   |++|..+++.+...|++|++++++.++.+.+.++   .|. ..+    .|-.+.+++.+.+.+...  
T Consensus        30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            357899999   8999999988888999999999998776654422   232 111    233333123222222211  


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|++|++.|
T Consensus       110 g~iD~vi~~Ag  120 (279)
T 1xg5_A          110 SGVDICINNAG  120 (279)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36999999887

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.08  E-value=0.002  Score=48.17  Aligned_cols=103  Identities=18%  Similarity=0.280  Sum_probs=67.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCee---eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDA---FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      +|+.++|+   +++|.+.++.....|++|+.+++++++.+.+.++   .|....   .|-.+.++..+.+.+...  +++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            68899999   8999999999999999999999998876655433   343222   233333233333333322  379


Q ss_pred             cEEEcCCChH-----------HH---------------HHHHHhh---ccCcEEEEEcccccc
Q 043295          105 DVYFDNVGGE-----------ML---------------EAAVANM---NLFGRVAACGVISEC  138 (223)
Q Consensus       105 d~vid~~g~~-----------~~---------------~~~~~~l---~~~G~~v~~g~~~~~  138 (223)
                      |+++++.|..           .+               +.++..|   ..+|++|.++...+.
T Consensus        88 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~  150 (255)
T 4g81_D           88 DILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQ  150 (255)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhc
Confidence            9999988721           11               1234455   246899999876654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.07  E-value=0.00097  Score=50.70  Aligned_cols=77  Identities=16%  Similarity=0.199  Sum_probs=50.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC--ee--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD--DA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~--~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++   +..  ..  .|-.+.++..+.+.+...  ++
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  111 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFAR  111 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            67899999   89999999888889999999999988766554333   111  11  344443223222322221  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus       112 iD~lvnnAG  120 (281)
T 4dry_A          112 LDLLVNNAG  120 (281)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999886

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.07  E-value=0.0014  Score=49.27  Aligned_cols=94  Identities=13%  Similarity=0.005  Sum_probs=66.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      .++.+||.. .|.|..+.++++.. |.+|++++.++...+.++ +.+....+...+..++     ....+.+|+|+....
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~d~~~~-----~~~~~~fD~v~~~~~  157 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAA-KRYPQVTFCVASSHRL-----PFSDTSMDAIIRIYA  157 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHH-HHCTTSEEEECCTTSC-----SBCTTCEEEEEEESC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HhCCCcEEEEcchhhC-----CCCCCceeEEEEeCC
Confidence            467899988 56699999999986 789999999999999988 5543222211111011     112237999996444


Q ss_pred             hHHHHHHHHhhccCcEEEEEcc
Q 043295          113 GEMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 ~~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      ...+....+.|+++|+++....
T Consensus       158 ~~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          158 PCKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             CCCHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhHHHHHHhcCCCcEEEEEEc
Confidence            4568889999999999988754

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.07  E-value=0.0026  Score=47.59  Aligned_cols=77  Identities=17%  Similarity=0.241  Sum_probs=51.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh-----CCC-ee--eecCCcccHHHHHHHhCCC-C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL-----GFD-DA--FNYKEETDLKATLKRYFPD-G  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~-----g~~-~~--~~~~~~~~~~~~i~~~~~~-~  103 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++     +.. ..  .|-.+.+++.+.+.+.... +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            46789999   89999999888889999999999988766554333     211 11  3444432333333333322 4


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        86 id~lv~~Ag   94 (260)
T 2z1n_A           86 ADILVYSTG   94 (260)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.07  E-value=0.0074  Score=40.51  Aligned_cols=73  Identities=16%  Similarity=0.204  Sum_probs=53.6

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee-ecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF-NYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .++++|.  |.+|..+++.+...|.+|+++++++++.+.++ +.|...+. |..+    .+.+++..-.++|+++-+++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~-~~~~~~~~gd~~~----~~~l~~~~~~~~d~vi~~~~~   80 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLE-DEGFDAVIADPTD----ESFYRSLDLEGVSAVLITGSD   80 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH-HTTCEEEECCTTC----HHHHHHSCCTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-HCCCcEEECCCCC----HHHHHhCCcccCCEEEEecCC
Confidence            4568888  89999999999999999999999999988888 66654332 2222    223343322379999999996


Q ss_pred             H
Q 043295          114 E  114 (223)
Q Consensus       114 ~  114 (223)
                      +
T Consensus        81 ~   81 (141)
T 3llv_A           81 D   81 (141)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.06  E-value=0.0071  Score=44.13  Aligned_cols=98  Identities=12%  Similarity=0.008  Sum_probs=67.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCC----CCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFP----DGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~----~~~  104 (223)
                      .++++||-. ++.|..+..+++..  +.+|++++.+++..+.+++.   .|...-+..... +..+.+.....    +.+
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK-PALETLDELLAAGEAGTF  146 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHHHHHTTCTTCE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEc-CHHHHHHHHHhcCCCCCc
Confidence            678899888 78999999999976  56999999999888777633   244221222222 33333333321    469


Q ss_pred             cEEEcCCC-h---HHHHHHHHhhccCcEEEEEc
Q 043295          105 DVYFDNVG-G---EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       105 d~vid~~g-~---~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+|+-... .   ..+..+.++|++||.++...
T Consensus       147 D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          147 DVAVVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             EEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            99874432 2   46888889999999998754

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.05  E-value=0.0056  Score=42.66  Aligned_cols=96  Identities=20%  Similarity=0.239  Sum_probs=66.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHh---hCCC-eeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEK---LGFD-DAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~---~g~~-~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      .++++||-. ++.|..+..+++.. +.+|++++.++...+.+++.   .|.. .+ ....  +..+.+.. ..+.+|+|+
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~--d~~~~~~~-~~~~~D~i~   99 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQ--GAPRAFDD-VPDNPDVIF   99 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEEC--CTTGGGGG-CCSCCSEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEec--chHhhhhc-cCCCCCEEE
Confidence            788899988 77899999999987 56999999999888877732   3443 33 2221  11111211 114699998


Q ss_pred             cCCCh---HHHHHHHHhhccCcEEEEEcc
Q 043295          109 DNVGG---EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 d~~g~---~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .....   ..+..+.+.|+++|+++....
T Consensus       100 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A          100 IGGGLTAPGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             ECC-TTCTTHHHHHHHTCCTTCEEEEEEC
T ss_pred             ECCcccHHHHHHHHHHhcCCCCEEEEEee
Confidence            65543   368889999999999987654

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.04  E-value=0.0027  Score=47.79  Aligned_cols=78  Identities=21%  Similarity=0.298  Sum_probs=51.8

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCCee---eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -.++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++    +....   .|-.+.+++.+.+.+...  +
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   98 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            457889999   89999999988889999999999987765543233    54221   244433123222322211  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        99 ~iD~lvnnAg  108 (267)
T 1vl8_A           99 KLDTVVNAAG  108 (267)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999887

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.04  E-value=0.002  Score=48.36  Aligned_cols=77  Identities=12%  Similarity=0.139  Sum_probs=52.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe---eeecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD---AFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .+++++|+   |++|.+.++.....|++|+.+++++++.+.+.++++...   ..|-.+.++..+.+.+...  +++|++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l   84 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV   84 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence            46789999   899999999888899999999999888776654554221   1243433123222332221  369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        85 vnnAg   89 (263)
T 2a4k_A           85 AHFAG   89 (263)
T ss_dssp             EEGGG
T ss_pred             EECCC
Confidence            99887

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.03  E-value=0.0022  Score=48.26  Aligned_cols=77  Identities=14%  Similarity=0.293  Sum_probs=51.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .++++||+   |++|.+.++.....|++|+.++++.++.+.+.+++   |....   .|-.+.++..+.+.+...  +++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   82 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI   82 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46788999   89999999888889999999999988776655343   33211   344443123322332222  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        83 D~lVnnAG   90 (264)
T 3tfo_A           83 DVLVNNAG   90 (264)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999886

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.03  E-value=0.0028  Score=47.46  Aligned_cols=77  Identities=16%  Similarity=0.239  Sum_probs=51.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      +++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++    +....   .|-.+.+++.+.+.+...  ++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGG   85 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999   89999999888889999999999987766544233    43221   244433123332332221  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        86 id~lv~~Ag   94 (263)
T 3ai3_A           86 ADILVNNAG   94 (263)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.02  E-value=0.0068  Score=43.99  Aligned_cols=94  Identities=7%  Similarity=-0.001  Sum_probs=60.4

Q ss_pred             CEEEEE---CchHHHHHHHHH-HcCCeEEEEecCHH-HHHHHHHhhCCC-ee--eecCCcccHHHHHHHhCCCCccEEEc
Q 043295           38 EKVFVS---GAYGHLVGQYAK-LGGCYVVGSAGTNE-KVAILKEKLGFD-DA--FNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~-~~g~~v~~~~~~~~-~~~~~~~~~g~~-~~--~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      ++|+|+   |++|...++.+. ..|++|++++++++ +.+.+. ..+.. .+  .|..+.    +.+.+... ++|++|+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~D~~d~----~~~~~~~~-~~d~vv~   79 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI-IDHERVTVIEGSFQNP----GXLEQAVT-NAEVVFV   79 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH-HTSTTEEEEECCTTCH----HHHHHHHT-TCSEEEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc-cCCCceEEEECCCCCH----HHHHHHHc-CCCEEEE
Confidence            468999   899999888777 89999999999988 665553 22221 12  233332    23333322 5899999


Q ss_pred             CCChHH--HHHHHHhhccC--cEEEEEccccc
Q 043295          110 NVGGEM--LEAAVANMNLF--GRVAACGVISE  137 (223)
Q Consensus       110 ~~g~~~--~~~~~~~l~~~--G~~v~~g~~~~  137 (223)
                      +.|...  ....++.+...  |++|.++....
T Consensus        80 ~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           80 GAMESGSDMASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             SCCCCHHHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             cCCCCChhHHHHHHHHHhcCCCeEEEEeecee
Confidence            998522  34445555433  68888876544

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.02  E-value=0.0053  Score=45.64  Aligned_cols=94  Identities=19%  Similarity=0.170  Sum_probs=68.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCC-CccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPD-GIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~-~~d~v  107 (223)
                      .++++||-. ++.|..+..+++..  +.+|++++.+++..+.+++.   .|....+..... ++.    +.... .+|+|
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~----~~~~~~~~D~v  166 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLK-DIY----EGIEEENVDHV  166 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECS-CGG----GCCCCCSEEEE
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEEC-chh----hccCCCCcCEE
Confidence            789999988 77899999999985  56999999999888777733   354331122221 222    12333 79999


Q ss_pred             EcCCCh--HHHHHHHHhhccCcEEEEEc
Q 043295          108 FDNVGG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       108 id~~g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +.....  ..+..+.+.|+++|+++...
T Consensus       167 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          167 ILDLPQPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             EECSSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EECCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            876664  37889999999999998875

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.02  E-value=0.0029  Score=47.58  Aligned_cols=77  Identities=16%  Similarity=0.206  Sum_probs=50.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh-----CCCee---eecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL-----GFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~-----g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++     +....   .|-.+.+++.+.+.+...  +
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   91 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   91 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            56889999   89999999888888999999999988766544232     33211   244443123333332221  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        92 ~id~lv~nAg  101 (267)
T 1iy8_A           92 RIDGFFNNAG  101 (267)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999876

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.01  E-value=0.004  Score=46.32  Aligned_cols=75  Identities=20%  Similarity=0.367  Sum_probs=51.6

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe-e--eecCCcccHHHHHHHhCCC--CccEEEc
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD-A--FNYKEETDLKATLKRYFPD--GIDVYFD  109 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~-~--~~~~~~~~~~~~i~~~~~~--~~d~vid  109 (223)
                      ++++|+   |++|.+.++.....|++|+.+++++++.+.+.++++... .  .|-.+.+++.+.+.+....  ++|++++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            357888   899999999888899999999999888776664565321 1  3444432333334443332  7999999


Q ss_pred             CCC
Q 043295          110 NVG  112 (223)
Q Consensus       110 ~~g  112 (223)
                      +.|
T Consensus        81 nAg   83 (248)
T 3asu_A           81 NAG   83 (248)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            876

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.01  E-value=0.0033  Score=46.71  Aligned_cols=77  Identities=10%  Similarity=0.113  Sum_probs=51.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe--e--eecCCcccHHHHHHHhC-CCCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD--A--FNYKEETDLKATLKRYF-PDGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~--~--~~~~~~~~~~~~i~~~~-~~~~d~v  107 (223)
                      .+++++|+   |++|...++.....|++|+.+++++++.+.+.++++...  .  .|..+.+.+.+.+.+.. -+++|++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~l   89 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSIL   89 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcEE
Confidence            56789999   899999998888899999999999887766654554322  1  23333312222222211 1369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        90 i~~Ag   94 (254)
T 2wsb_A           90 VNSAG   94 (254)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99886

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.00  E-value=0.0044  Score=46.72  Aligned_cols=78  Identities=17%  Similarity=0.219  Sum_probs=52.3

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccH---HHHHHHhCCC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDL---KATLKRYFPD  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~---~~~i~~~~~~  102 (223)
                      -.+++++|+   |++|.+.++.....|++|+.+++++++.+.+.+++   +...   ..|-.+.++.   .+.+.+..++
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   98 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   98 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            357889999   89999999988889999999999987765543232   4321   1233333122   2333333335


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        99 ~id~lv~nAg  108 (273)
T 1ae1_A           99 KLNILVNNAG  108 (273)
T ss_dssp             CCCEEEECCC
T ss_pred             CCcEEEECCC
Confidence            7999999887

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.00  E-value=0.0027  Score=47.30  Aligned_cols=77  Identities=10%  Similarity=0.201  Sum_probs=51.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh-----C-CC-ee--eecCCcccHHHHHHHhCC--
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL-----G-FD-DA--FNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~-----g-~~-~~--~~~~~~~~~~~~i~~~~~--  101 (223)
                      .++++||+   +++|.+.++.....|++|+.+++++++.+.+.+++     + .. ..  .|-.+.++..+.+.+...  
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY   85 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence            57789999   89999999888888999999999988776655333     2 11 11  244433122322322221  


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|+++++.|
T Consensus        86 g~iD~lvnnAg   96 (250)
T 3nyw_A           86 GAVDILVNAAA   96 (250)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36999999887

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.99  E-value=0.0042  Score=46.98  Aligned_cols=76  Identities=21%  Similarity=0.165  Sum_probs=53.9

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC-CCccEE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP-DGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~~d~v  107 (223)
                      -.++++||+   +++|.+.++.....|++|+.++++.++.+.+.++++....   .|-.+.++..+.+.+... +++|++
T Consensus        28 l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~l  107 (281)
T 3ppi_A           28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYA  107 (281)
T ss_dssp             GTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeE
Confidence            467889999   8999999988888999999999999888777656765322   344443233444444411 278999


Q ss_pred             EcC
Q 043295          108 FDN  110 (223)
Q Consensus       108 id~  110 (223)
                      +.+
T Consensus       108 v~~  110 (281)
T 3ppi_A          108 VVA  110 (281)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            887

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.99  E-value=0.0084  Score=42.52  Aligned_cols=93  Identities=14%  Similarity=0.095  Sum_probs=61.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC----------CeEEEEecCHHHHHHHHHhhCCCeee---ecCCcccHHHHHHHhC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG----------CYVVGSAGTNEKVAILKEKLGFDDAF---NYKEETDLKATLKRYF  100 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g----------~~v~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~i~~~~  100 (223)
                      +++++||-. .+.|..+..+++..|          .+|++++.++..      .+.....+   |..+. ...+.+....
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~~~~~~~~~~~d~~~~-~~~~~~~~~~   93 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------PLEGATFLCPADVTDP-RTSQRILEVL   93 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------CCTTCEEECSCCTTSH-HHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------cCCCCeEEEeccCCCH-HHHHHHHHhc
Confidence            788999999 666999999999976          789999988632      11111122   11222 3344455555


Q ss_pred             CC-CccEEE-----cCCCh-------------HHHHHHHHhhccCcEEEEEcc
Q 043295          101 PD-GIDVYF-----DNVGG-------------EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       101 ~~-~~d~vi-----d~~g~-------------~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      ++ .+|+|+     ++++.             ..+..+.+.|+++|+++....
T Consensus        94 ~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           94 PGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             GGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence            55 799998     44342             235667889999999987643

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.98  E-value=0.0087  Score=43.90  Aligned_cols=77  Identities=13%  Similarity=0.244  Sum_probs=49.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      +++++||+   |++|.+.++.....|++|+.++++.++.+.+.+++    +....   .|-.+.++..+.+.+...  ++
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            36789999   89999999999999999999999988766554332    33222   233332122222111111  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        81 id~li~~Ag   89 (235)
T 3l77_A           81 VDVVVANAG   89 (235)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999886

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.98  E-value=0.0033  Score=46.69  Aligned_cols=77  Identities=19%  Similarity=0.351  Sum_probs=51.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .+++++|+   |++|.+.++.....|++|+.+++++++.+.+.+++   |... .  .|-.+.++..+.+.+...  +++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   85 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGL   85 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            46789999   89999999888889999999999988766554333   4321 1  243333123322322221  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        86 d~lv~nAg   93 (247)
T 2jah_A           86 DILVNNAG   93 (247)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999876

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.98  E-value=0.0031  Score=46.99  Aligned_cols=75  Identities=20%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCccc---HHHHHHHhCCCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETD---LKATLKRYFPDG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~---~~~~i~~~~~~~  103 (223)
                      .++++||+   +++|.+.++.....|++|+.+++++++.+.+.+++   |....   .|-.+.++   +.+.+.+.  ++
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--g~   83 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH--AP   83 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH--SC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh--CC
Confidence            57889999   89999999988889999999999988766554333   33211   23333312   23333333  57


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        84 id~lv~nAg   92 (252)
T 3h7a_A           84 LEVTIFNVG   92 (252)
T ss_dssp             EEEEEECCC
T ss_pred             ceEEEECCC
Confidence            999999887

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.97  E-value=0.0045  Score=46.31  Aligned_cols=77  Identities=14%  Similarity=0.222  Sum_probs=51.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHH---HHHHHhCCCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLK---ATLKRYFPDG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~---~~i~~~~~~~  103 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++   |...   ..|-.+.++..   +.+.+..+++
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   87 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   87 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46889999   89999999888889999999999988765543233   3321   12333331222   2233333257


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        88 id~lv~~Ag   96 (260)
T 2ae2_A           88 LNILVNNAG   96 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.97  E-value=0.0019  Score=47.54  Aligned_cols=100  Identities=15%  Similarity=0.140  Sum_probs=67.5

Q ss_pred             HHHHHh-hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCC-
Q 043295           29 GFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPD-  102 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~-  102 (223)
                      .+.... .++++||.. +|.|..+..+++..+.+|++++.++...+.+++.   .|...+ ..... +..   .....+ 
T Consensus        83 ~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~-d~~---~~~~~~~  157 (235)
T 1jg1_A           83 MLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNV-HVILG-DGS---KGFPPKA  157 (235)
T ss_dssp             HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSE-EEEES-CGG---GCCGGGC
T ss_pred             HHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEC-Ccc---cCCCCCC
Confidence            343344 788899999 7799999999998878999999999887777632   344332 11111 221   111122 


Q ss_pred             CccEEEcCCCh-HHHHHHHHhhccCcEEEEEc
Q 043295          103 GIDVYFDNVGG-EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       103 ~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ++|+|+.+..- .......+.|+++|+++..-
T Consensus       158 ~fD~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          158 PYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             CEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CccEEEECCcHHHHHHHHHHhcCCCcEEEEEE
Confidence            59999876653 23457788999999988754

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.97  E-value=0.0049  Score=47.50  Aligned_cols=95  Identities=12%  Similarity=0.154  Sum_probs=66.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||-. +|.|..+..+++..|++|++++.+++..+.+++.+   |...-+..... ++    .+. ++.+|+|+..
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~----~~~-~~~fD~v~~~  162 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ-GW----EDF-AEPVDRIVSI  162 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-CG----GGC-CCCCSEEEEE
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-Ch----HHC-CCCcCEEEEe
Confidence            678899999 77799999999988999999999999888887332   33211111111 11    111 2469999865


Q ss_pred             -----CCh----HHHHHHHHhhccCcEEEEEccc
Q 043295          111 -----VGG----EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       111 -----~g~----~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                           .+.    ..+..+.++|+|||+++.....
T Consensus       163 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          163 EAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             SCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence                 432    3577888999999999876543

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.97  E-value=0.0033  Score=47.59  Aligned_cols=77  Identities=18%  Similarity=0.268  Sum_probs=50.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++   |...   ..|-.+.+++.+.+.+...  +++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i  100 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV  100 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            46789999   89999999988889999999999987765543233   4321   1243333122222222211  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus       101 D~lv~~Ag  108 (277)
T 2rhc_B          101 DVLVNNAG  108 (277)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999886

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.96  E-value=0.0044  Score=45.89  Aligned_cols=74  Identities=16%  Similarity=0.034  Sum_probs=51.5

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEE-e--cCHHHHHHHHHhh-CCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGS-A--GTNEKVAILKEKL-GFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~-~--~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      +++++|+   |++|.+.++.....|++|+.+ +  +++++.+.+.+++ +. .+.|...-..+.+.+.+.. +++|++++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-g~iD~lv~   78 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGT-IALAEQKPERLVDATLQHG-EAIDTIVS   78 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHSTTE-EECCCCCGGGHHHHHGGGS-SCEEEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHHc-CCCCEEEE
Confidence            4678888   899999999988899999999 6  8888877665455 32 2333333224444444433 36999999


Q ss_pred             CCC
Q 043295          110 NVG  112 (223)
Q Consensus       110 ~~g  112 (223)
                      +.|
T Consensus        79 ~Ag   81 (244)
T 1zmo_A           79 NDY   81 (244)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            887

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.96  E-value=0.0033  Score=48.24  Aligned_cols=78  Identities=22%  Similarity=0.299  Sum_probs=52.7

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      -.++++||+   |++|.+.++.....|++|+.++++.++.+.+.+++   +...   ..|-.+.++..+.+.+...  ++
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            367899999   89999999988889999999999988876654333   3321   1344443123333332221  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus       109 id~lvnnAg  117 (301)
T 3tjr_A          109 VDVVFSNAG  117 (301)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.96  E-value=0.0034  Score=47.35  Aligned_cols=77  Identities=19%  Similarity=0.182  Sum_probs=51.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CCccEEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++.....  .|-.+.++..+.+.+...  +++|+++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv   87 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   87 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            46889999   8999999998888999999999998877766534432122  233333123222222211  3699999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        88 ~nAg   91 (270)
T 1yde_A           88 NNAG   91 (270)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9876

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.95  E-value=0.0022  Score=48.18  Aligned_cols=77  Identities=21%  Similarity=0.279  Sum_probs=51.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee----eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA----FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~----~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++   +...+    .|-.+.++..+.+.+...  ++
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGG   88 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            57889999   89999999988889999999999988776554333   21111    233333122222222221  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        89 id~lvnnAg   97 (262)
T 3pk0_A           89 IDVVCANAG   97 (262)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.95  E-value=0.0013  Score=49.20  Aligned_cols=77  Identities=18%  Similarity=0.133  Sum_probs=45.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .++++||+   +++|.+.++.....|++|+.+++++++.+.+.++++....   .|-.+.++..+.+.+...  +++|++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   85 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHGL   85 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            57889999   8999999998888999999999988776655535543211   233333123333332221  269999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        86 v~nAg   90 (257)
T 3tpc_A           86 VNCAG   90 (257)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99887

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.95  E-value=0.0033  Score=47.12  Aligned_cols=77  Identities=16%  Similarity=0.210  Sum_probs=51.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-e--eeecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-D--AFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~--~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++... .  ..|-.+.+++.+.+.+...  +++|++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~l   90 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLL   90 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46889999   89999999988889999999999988776665344321 1  1343333123332332211  269999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        91 v~~Ag   95 (263)
T 3ak4_A           91 CANAG   95 (263)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99887

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.95  E-value=0.0028  Score=47.52  Aligned_cols=77  Identities=19%  Similarity=0.217  Sum_probs=51.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-e--eeecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-D--AFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~--~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.++++.. .  ..|-.+.+++.+.+.+...  +++|++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l   85 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46789999   89999999888889999999999988776655344321 1  1243333123333332221  269999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        86 v~~Ag   90 (260)
T 1nff_A           86 VNNAG   90 (260)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99887

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.95  E-value=0.0024  Score=47.64  Aligned_cols=77  Identities=19%  Similarity=0.186  Sum_probs=52.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.++++....   .|-.+.+++.+.+.+...  +++|++
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   84 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            46788999   8999999988888899999999998887766545554221   233333122222222211  368999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        85 v~~Ag   89 (253)
T 1hxh_A           85 VNNAG   89 (253)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99887

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.94  E-value=0.002  Score=48.84  Aligned_cols=77  Identities=17%  Similarity=0.278  Sum_probs=52.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .++++||+   |++|.+.++.....|++|++++++.++.+.+.++++....   .|-.+.+++.+.+.+...  +++|++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~l   83 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVL   83 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            46789999   8999999998888999999999998887766645543221   233333123332332221  269999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        84 v~~Ag   88 (281)
T 3m1a_A           84 VNNAG   88 (281)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99887

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.94  E-value=0.0023  Score=47.84  Aligned_cols=77  Identities=19%  Similarity=0.148  Sum_probs=52.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .+++++|+   |++|...++.....|++|+.++++.++.+.+.++++....   .|-.+.+++.+.+.+...  +++|++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   90 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVA   90 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            56889999   8999999988888999999999988776665546654221   233333123333332211  369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      |++.|
T Consensus        91 i~~Ag   95 (265)
T 2o23_A           91 VNCAG   95 (265)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99876

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.94  E-value=0.0089  Score=44.38  Aligned_cols=96  Identities=14%  Similarity=0.050  Sum_probs=67.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHhh----CCCeeeecCCcccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEKL----GFDDAFNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      .++++||-. ++.|..+..+++..  +.+|++++.++...+.+++.+    |.+.+- .... +..+.  ....+.+|+|
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~-~~~~-d~~~~--~~~~~~~D~v  170 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVR-FHLG-KLEEA--ELEEAAYDGV  170 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEE-EEES-CGGGC--CCCTTCEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEE-EEEC-chhhc--CCCCCCcCEE
Confidence            789999999 77899999999986  569999999999888887332    533221 1111 11110  0112369999


Q ss_pred             EcCCCh--HHHHHHHHhhccCcEEEEEcc
Q 043295          108 FDNVGG--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       108 id~~g~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      +.....  ..+..+.+.|+++|+++.+..
T Consensus       171 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          171 ALDLMEPWKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             EEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             EECCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            876553  468889999999999988753

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.93  E-value=0.0028  Score=48.02  Aligned_cols=78  Identities=17%  Similarity=0.313  Sum_probs=52.0

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      -.++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++   +... .  .|-.+.++..+.+.+...  ++
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  109 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGG  109 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            567899999   89999999888889999999999887765554333   3221 1  244433223333332221  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus       110 iD~lvnnAg  118 (276)
T 3r1i_A          110 IDIAVCNAG  118 (276)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.93  E-value=0.0028  Score=49.08  Aligned_cols=77  Identities=16%  Similarity=0.198  Sum_probs=51.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CC--C-e--eeecCCcccHHHHHHHhC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GF--D-D--AFNYKEETDLKATLKRYF--PD  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~--~-~--~~~~~~~~~~~~~i~~~~--~~  102 (223)
                      .++++||+   |++|.+.++.....|++|+.++++.++.+.+.+++   +.  . .  ..|-.+.+++.+.+....  .+
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            46789999   89999999888889999999999998776654333   22  1 1  134444322333333221  13


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|++|++.|
T Consensus        87 ~id~lv~nAg   96 (319)
T 3ioy_A           87 PVSILCNNAG   96 (319)
T ss_dssp             CEEEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999987

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.93  E-value=0.0039  Score=46.32  Aligned_cols=77  Identities=19%  Similarity=0.264  Sum_probs=51.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++   +... .  .|-.+.++..+.+.+...  +++
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGI   87 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999   89999999988889999999999988776655333   3211 1  233333122222222211  269


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        88 d~li~~Ag   95 (253)
T 3qiv_A           88 DYLVNNAA   95 (253)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999886

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.93  E-value=0.0053  Score=43.69  Aligned_cols=98  Identities=18%  Similarity=0.208  Sum_probs=66.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHh---hCC-CeeeecCCcccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEK---LGF-DDAFNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~---~g~-~~~~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      +++++||-. .|.|..+..+++..+  .+|++++.++...+.+++.   .|. ..+ ..... +. ..+....++.+|+|
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v-~~~~~-d~-~~~~~~~~~~fD~v   97 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRV-TLIKD-GH-QNMDKYIDCPVKAV   97 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGE-EEECS-CG-GGGGGTCCSCEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCe-EEEEC-CH-HHHhhhccCCceEE
Confidence            788899888 788999999999864  5999999999888777632   233 222 11111 21 11222233479999


Q ss_pred             EcCCCh----------------HHHHHHHHhhccCcEEEEEccc
Q 043295          108 FDNVGG----------------EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       108 id~~g~----------------~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      +...+-                ..+..+.+.|+++|+++.....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            854421                3678888999999999887543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.92  E-value=0.0035  Score=47.49  Aligned_cols=78  Identities=19%  Similarity=0.304  Sum_probs=50.3

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      ..++++||+   +++|.+.++.....|++|+.+++++++.+.+.+++   |....   .|-.+.++..+.+.+...  ++
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP  101 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            457889999   89999999888888999999999988776554333   33221   243333122222332221  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus       102 id~lv~nAg  110 (279)
T 3sju_A          102 IGILVNSAG  110 (279)
T ss_dssp             CCEEEECCC
T ss_pred             CcEEEECCC
Confidence            999999887

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.91  E-value=0.012  Score=44.43  Aligned_cols=102  Identities=16%  Similarity=0.259  Sum_probs=62.6

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC-HHHHHHHHH---hhCCCee---eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT-NEKVAILKE---KLGFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~-~~~~~~~~~---~~g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -.++++||+   +++|.+.++.....|++|+.++++ .++.+.+.+   ..|....   .|-.+.++..+.+.+...  +
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG  108 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            467899999   899999999888899999998654 344443332   2343222   233333123333333222  2


Q ss_pred             CccEEEcCCCh-----------HH---------------HHHHHHhhccCcEEEEEcccc
Q 043295          103 GIDVYFDNVGG-----------EM---------------LEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       103 ~~d~vid~~g~-----------~~---------------~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      ++|+++++.|.           +.               .+.+...++.+|++|.++...
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~  168 (271)
T 3v2g_A          109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNL  168 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGG
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChh
Confidence            69999998862           11               123345566789999987643

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.90  E-value=0.0046  Score=45.76  Aligned_cols=77  Identities=19%  Similarity=0.324  Sum_probs=51.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCcccHHHHHHHhC--CCCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETDLKATLKRYF--PDGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~--~~~~  104 (223)
                      .+++++|+   |++|.+.++.....|++|+.+++++++.+.+.+++   +....   .|-.+.++..+.+.+..  .+++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            46789999   89999999888888999999999988766554332   43221   23333312333333322  2369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        84 d~li~~Ag   91 (247)
T 3lyl_A           84 DILVNNAG   91 (247)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.89  E-value=0.0044  Score=46.16  Aligned_cols=77  Identities=14%  Similarity=0.146  Sum_probs=50.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----C--CC-eeeec--CCcccHHHHHHHhC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----G--FD-DAFNY--KEETDLKATLKRYF--P  101 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g--~~-~~~~~--~~~~~~~~~i~~~~--~  101 (223)
                      .++++||+   +++|.+.++.....|++|+.+++++++.+.+.+++    +  .. ...|-  .+.++..+.+.+..  .
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNY   90 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHhC
Confidence            57899999   89999999888889999999999988766554332    2  11 11233  22212222222221  1


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|+++++.|
T Consensus        91 g~id~lv~nAg  101 (252)
T 3f1l_A           91 PRLDGVLHNAG  101 (252)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            36999999887

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.89  E-value=0.0041  Score=47.25  Aligned_cols=78  Identities=13%  Similarity=0.194  Sum_probs=52.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhC---CCee---eecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG---FDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g---~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .+++++||+   +++|.+.++.....|++|+.++++.++.+.+.+++.   ....   .|-.+.++..+.+.+...  ++
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH  105 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            567899999   899999999888899999999999888776654442   2211   233333122233332221  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus       106 iD~lVnnAg  114 (283)
T 3v8b_A          106 LDIVVANAG  114 (283)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.89  E-value=0.0094  Score=45.52  Aligned_cols=78  Identities=13%  Similarity=0.118  Sum_probs=49.8

Q ss_pred             hCCCEEEEE---C--chHHHHHHHHHHcCCeEEEEecCHHHHHHHH---HhhCCCee--eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---G--AYGHLVGQYAKLGGCYVVGSAGTNEKVAILK---EKLGFDDA--FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g--~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~---~~~g~~~~--~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -.++++||+   |  ++|.+.++.....|++|+.++++++..+.+.   ++.+....  .|-.+.++..+.+.+...  +
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWG  107 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            357899999   3  8999999888889999999998875443333   13443222  243333123333332221  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus       108 ~iD~lVnnAG  117 (296)
T 3k31_A          108 SLDFVVHAVA  117 (296)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999887

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.88  E-value=0.013  Score=44.72  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=63.9

Q ss_pred             hCCCEEEEE---Cc--hHHHHHHHHHHcCCeEEEEecCHHHHHHHH---HhhCCCee--eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILK---EKLGFDDA--FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~--vG~~a~qla~~~g~~v~~~~~~~~~~~~~~---~~~g~~~~--~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -.++++||+   |+  +|.+.++.....|++|+.++++++..+.+.   ++.+....  .|-.+.++..+.+.+...  +
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG  108 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            467899999   44  999999988889999999998865433332   13343222  233333122222222211  3


Q ss_pred             CccEEEcCCChH---------------HH---------------HHHHHhhccCcEEEEEcccccc
Q 043295          103 GIDVYFDNVGGE---------------ML---------------EAAVANMNLFGRVAACGVISEC  138 (223)
Q Consensus       103 ~~d~vid~~g~~---------------~~---------------~~~~~~l~~~G~~v~~g~~~~~  138 (223)
                      ++|+++++.|-.               .+               +.++..+..+|++|.++.....
T Consensus       109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~  174 (293)
T 3grk_A          109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAE  174 (293)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGT
T ss_pred             CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhc
Confidence            699999988721               11               2234456678999998876543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.87  E-value=0.004  Score=46.70  Aligned_cols=77  Identities=17%  Similarity=0.222  Sum_probs=51.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .++++||+   +++|.+.++.....|++|+.++++.++.+.+.+++   |....   .|-.+.++..+.+.+...  +++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   89 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRV   89 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999   89999999988889999999999988776654333   33211   244443122222222211  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        90 d~lv~nAg   97 (264)
T 3ucx_A           90 DVVINNAF   97 (264)
T ss_dssp             SEEEECCC
T ss_pred             cEEEECCC
Confidence            99999875

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.87  E-value=0.0027  Score=48.58  Aligned_cols=78  Identities=15%  Similarity=0.241  Sum_probs=52.0

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC---Cee----eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF---DDA----FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~---~~~----~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -.++++||+   |++|.+.++.....|++|+.++++.++.+.+.+++..   ..+    .|-.+.++..+.+.+...  +
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            467889999   8999999998888999999999998876665544432   111    233333122222222221  2


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus       119 ~iD~lvnnAg  128 (293)
T 3rih_A          119 ALDVVCANAG  128 (293)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999887

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.87  E-value=0.0033  Score=47.62  Aligned_cols=79  Identities=15%  Similarity=0.157  Sum_probs=52.0

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC--ee----eecCCcccHHHHHHHhCC-
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD--DA----FNYKEETDLKATLKRYFP-  101 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~--~~----~~~~~~~~~~~~i~~~~~-  101 (223)
                      -.++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++   +..  .+    .|-.+.++..+.+.+... 
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            357899999   89999999988889999999999988766554333   320  11    233333123333333222 


Q ss_pred             -CCccEEEcCCCh
Q 043295          102 -DGIDVYFDNVGG  113 (223)
Q Consensus       102 -~~~d~vid~~g~  113 (223)
                       +++|+++++.|.
T Consensus        89 ~g~id~lv~nAg~  101 (281)
T 3svt_A           89 HGRLHGVVHCAGG  101 (281)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence             369999998873

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.87  E-value=0.0066  Score=45.86  Aligned_cols=95  Identities=15%  Similarity=0.229  Sum_probs=66.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHh---hCC-CeeeecCCcccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEK---LGF-DDAFNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~---~g~-~~~~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      .++.+||-. ++.|..+..+++..  +.+|++++.++...+.+++.   .|. +.+ ..... ++.+.   ...+.+|+|
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v-~~~~~-d~~~~---~~~~~~D~V  185 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERV-TIKVR-DISEG---FDEKDVDAL  185 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGE-EEECC-CGGGC---CSCCSEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCE-EEEEC-CHHHc---ccCCccCEE
Confidence            788999988 67799999999986  46999999999988877732   244 222 11111 22111   122379999


Q ss_pred             EcCCCh--HHHHHHHHhhccCcEEEEEcc
Q 043295          108 FDNVGG--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       108 id~~g~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      +.....  ..+..+.+.|+++|.++....
T Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          186 FLDVPDPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             EECCSCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             EECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            876553  468889999999999988753

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.86  E-value=0.0038  Score=46.76  Aligned_cols=79  Identities=20%  Similarity=0.238  Sum_probs=52.0

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      -.++++||+   |++|.+.++.....|++|+.++++.++.+.+.+++   +...   ..|-.+.++..+.+.+...  ++
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  106 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGR  106 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            457899999   89999999888888999999999988776554333   3321   1243333123322322211  26


Q ss_pred             ccEEEcCCCh
Q 043295          104 IDVYFDNVGG  113 (223)
Q Consensus       104 ~d~vid~~g~  113 (223)
                      +|+++++.|.
T Consensus       107 id~lv~~Ag~  116 (262)
T 3rkr_A          107 CDVLVNNAGV  116 (262)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999998873

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.85  E-value=0.002  Score=48.44  Aligned_cols=78  Identities=18%  Similarity=0.283  Sum_probs=52.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh----hCCCee---eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK----LGFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -.++++||+   +++|.+.++.....|++|+.++++.++.+.+.++    .+....   .|-.+.++..+.+.+...  +
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            457889999   8999999999889999999999998876655433    343221   344443233333332222  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        98 ~id~lv~nAg  107 (266)
T 4egf_A           98 GLDVLVNNAG  107 (266)
T ss_dssp             SCSEEEEECC
T ss_pred             CCCEEEECCC
Confidence            6999999876

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.85  E-value=0.017  Score=42.41  Aligned_cols=73  Identities=16%  Similarity=0.266  Sum_probs=50.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh-CCCee-eecCCcccHHHHHHHhCC--CCccEEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL-GFDDA-FNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~-g~~~~-~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      +++++||+   |++|...++.....|++|+++++++++.+.+.+++ +...+ .|..+.    +.+.+...  +++|+++
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~~~~~~~~id~vi   81 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDW----DATEKALGGIGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCH----HHHHHHHTTCCCCSEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCH----HHHHHHHHHcCCCCEEE
Confidence            46789999   89999999988889999999999988776655333 22211 233332    22333322  2689999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        82 ~~Ag   85 (244)
T 1cyd_A           82 NNAA   85 (244)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            9987

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.85  E-value=0.0096  Score=45.35  Aligned_cols=102  Identities=19%  Similarity=0.225  Sum_probs=62.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH-HHHHHH---hhCCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK-VAILKE---KLGFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~-~~~~~~---~~g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .++++||+   |++|.+.++.....|++|+.++++.++ .+.+.+   +.|....   .|-.+.++..+.+.+...  ++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  125 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGS  125 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999   899999999888899999999987653 222221   3343222   243433122222322221  36


Q ss_pred             ccEEEcCCCh------------HHH---------------HHHHHhhccCcEEEEEccccc
Q 043295          104 IDVYFDNVGG------------EML---------------EAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       104 ~d~vid~~g~------------~~~---------------~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      +|+++++.|.            +.+               +.++..++.+|++|.++....
T Consensus       126 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~  186 (291)
T 3ijr_A          126 LNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVA  186 (291)
T ss_dssp             CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHH
T ss_pred             CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHh
Confidence            9999988652            011               123445567899998876543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.85  E-value=0.0048  Score=46.21  Aligned_cols=77  Identities=18%  Similarity=0.261  Sum_probs=50.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .+++++|+   |++|.+.++.....|++|+.+++++++.+.+.+++   |....   .|-.+.++....+.+...  +++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   85 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   85 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            46789999   89999999998889999999999987766554333   33211   243333122222222221  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        86 d~lv~nAg   93 (262)
T 1zem_A           86 DFLFNNAG   93 (262)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999876

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.83  E-value=0.0068  Score=46.64  Aligned_cols=85  Identities=20%  Similarity=0.142  Sum_probs=62.8

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .|.+|.|.  |.+|...++.++..|++|++.+++.++ +... ++|+...       ++.+.+.+     .|+|+-++..
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~-~~g~~~~-------~l~ell~~-----aDvV~l~~p~  206 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAK-EVNGKFV-------DLETLLKE-----SDVVTIHVPL  206 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-HTTCEEC-------CHHHHHHH-----CSEEEECCCC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHh-hcCcccc-------CHHHHHhh-----CCEEEEecCC
Confidence            46789999  999999999999999999999988776 5555 6776321       23333332     7899888763


Q ss_pred             -H----HH-HHHHHhhccCcEEEEEcc
Q 043295          114 -E----ML-EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       114 -~----~~-~~~~~~l~~~G~~v~~g~  134 (223)
                       +    .+ ...+..+++++.++.++.
T Consensus       207 ~~~t~~li~~~~l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          207 VESTYHLINEERLKLMKKTAILINTSR  233 (307)
T ss_dssp             STTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             ChHHhhhcCHHHHhcCCCCeEEEECCC
Confidence             2    12 356788999999998875

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.83  E-value=0.0046  Score=46.77  Aligned_cols=78  Identities=19%  Similarity=0.227  Sum_probs=51.4

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC-Cee----eecCCcccHHHHHHHhC--CCCc
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF-DDA----FNYKEETDLKATLKRYF--PDGI  104 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~-~~~----~~~~~~~~~~~~i~~~~--~~~~  104 (223)
                      -.+++++|+   |++|.+.++.....|++|+.+++++++.+.+.+++.. ..+    .|-.+.+++.+.+.+..  -+++
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARL  106 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            356889999   8999999998888999999999998876655434421 011    23333312222222221  1369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus       107 D~lvnnAg  114 (276)
T 2b4q_A          107 DILVNNAG  114 (276)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.82  E-value=0.0045  Score=46.80  Aligned_cols=78  Identities=15%  Similarity=0.263  Sum_probs=51.7

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCCee---eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -.++++||+   +++|.+.++.....|++|+.++++.++.+.+.+++    |....   .|-.+.++..+.+.+...  +
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g  104 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFG  104 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            357899999   79999999988889999999999987655443232    43221   244433123333332222  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus       105 ~id~lv~nAg  114 (277)
T 4fc7_A          105 RIDILINCAA  114 (277)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            6999999987

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.82  E-value=0.0035  Score=45.10  Aligned_cols=95  Identities=12%  Similarity=-0.004  Sum_probs=64.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++++||-. .+.|..+..+++. +.+|++++.+++..+.+++.   .|...+- .... +..+...  ..+.||+|+..
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~-~~~~-d~~~~~~--~~~~~D~i~~~  150 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVS-TRHG-DGWQGWQ--ARAPFDAIIVT  150 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEE-EEES-CGGGCCG--GGCCEEEEEES
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceE-EEEC-CcccCCc--cCCCccEEEEc
Confidence            788999999 7789999999988 88999999999988877743   2443221 1111 1111111  12379999876


Q ss_pred             CCh-HHHHHHHHhhccCcEEEEEcc
Q 043295          111 VGG-EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       111 ~g~-~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      ..- .......+.|+++|+++..-.
T Consensus       151 ~~~~~~~~~~~~~L~pgG~lv~~~~  175 (210)
T 3lbf_A          151 AAPPEIPTALMTQLDEGGILVLPVG  175 (210)
T ss_dssp             SBCSSCCTHHHHTEEEEEEEEEEEC
T ss_pred             cchhhhhHHHHHhcccCcEEEEEEc
Confidence            543 233467889999999887543

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.82  E-value=0.003  Score=47.93  Aligned_cols=77  Identities=23%  Similarity=0.310  Sum_probs=51.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .++++||+   +++|.+.++.....|++|+.+++++++.+.+.+++   +....   .|-.+.++....+.+...  +++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   86 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGL   86 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            57889999   89999999988889999999999988877665454   22111   233333122222222211  269


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        87 D~lvnnAg   94 (280)
T 3tox_A           87 DTAFNNAG   94 (280)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=96.81  E-value=0.0031  Score=45.60  Aligned_cols=96  Identities=18%  Similarity=0.142  Sum_probs=65.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      .++++||.. .+.|..+..+++..|  .+|++++.++...+.+++.   .|...+ ..... +......  ..+.+|+|+
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~~~~--~~~~fD~v~  151 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNV-IVIVG-DGTLGYE--PLAPYDRIY  151 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTE-EEEES-CGGGCCG--GGCCEEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCe-EEEEC-CcccCCC--CCCCeeEEE
Confidence            788999999 778999999999887  7999999999888777632   344332 11111 1111110  123699998


Q ss_pred             cCCCh-HHHHHHHHhhccCcEEEEEcc
Q 043295          109 DNVGG-EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 d~~g~-~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .+..- ...+.+.++|+++|+++..-.
T Consensus       152 ~~~~~~~~~~~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          152 TTAAGPKIPEPLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             ESSBBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             ECCchHHHHHHHHHHcCCCcEEEEEEC
Confidence            77654 234577889999999987643

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.81  E-value=0.0041  Score=46.89  Aligned_cols=78  Identities=18%  Similarity=0.315  Sum_probs=51.5

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCe---eeecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDD---AFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      -.++++||+   +++|.+.++.....|++|+.+++++++.+.+.++   .+...   ..|-.+.++..+.+.+...  ++
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGA  105 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            457889999   8999999988888999999999998876654422   23321   2344443123322332221  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus       106 iD~lvnnAg  114 (270)
T 3ftp_A          106 LNVLVNNAG  114 (270)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.81  E-value=0.011  Score=44.38  Aligned_cols=102  Identities=17%  Similarity=0.182  Sum_probs=63.0

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC-HHHHHHHHH---hhCCCee---eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT-NEKVAILKE---KLGFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~-~~~~~~~~~---~~g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -.++++||+   +++|.+.++.....|++|+.++++ .++.+.+.+   ..|....   .|-.+.++..+.+.+...  +
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   95 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFG   95 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            457889999   899999999888999999987654 444443332   3343222   233333123333333222  2


Q ss_pred             CccEEEcCCCh-----------HH---------------HHHHHHhhccCcEEEEEcccc
Q 043295          103 GIDVYFDNVGG-----------EM---------------LEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       103 ~~d~vid~~g~-----------~~---------------~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      ++|+++++.|.           +.               .+.++..+.++|+++.++...
T Consensus        96 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           96 HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            69999998872           11               123455667789999988754

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.80  E-value=0.0071  Score=45.92  Aligned_cols=94  Identities=20%  Similarity=0.231  Sum_probs=65.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhh----CC---------CeeeecCCcccHHHHHHHh
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKL----GF---------DDAFNYKEETDLKATLKRY   99 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~----g~---------~~~~~~~~~~~~~~~i~~~   99 (223)
                      .++.+||+. +|.|..+..+++. +. +|++++.++.-.+.+++.+    +.         ..+ ..... +..+.+.. 
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v-~~~~~-D~~~~l~~-  149 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKA-KLTIG-DGFEFIKN-  149 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSE-EEEES-CHHHHHHH-
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcE-EEEEC-chHHHhcc-
Confidence            567899999 8889999999988 65 9999999999888888544    21         111 11112 33444444 


Q ss_pred             CCCCccEEE-cCCC----------hHHHHHHHHhhccCcEEEEEc
Q 043295          100 FPDGIDVYF-DNVG----------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       100 ~~~~~d~vi-d~~g----------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                       .+.+|+|+ |...          .+.+..+.+.|+++|.++.-.
T Consensus       150 -~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          150 -NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             -CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence             44799886 4331          235778889999999998753

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.80  E-value=0.0062  Score=44.58  Aligned_cols=74  Identities=8%  Similarity=0.063  Sum_probs=50.1

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      +++||+   |++|.+.++.....|++|+.+++++++.+.+.++++....   .|-.+. +-.+.+.+...+.+|+++++.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~~d~lv~~A   80 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASH-QEVEQLFEQLDSIPSTVVHSA   80 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCH-HHHHHHHHSCSSCCSEEEECC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCH-HHHHHHHHHHhhcCCEEEEeC
Confidence            357888   8999999988888999999999999988877655543221   243433 222333332333459999988


Q ss_pred             C
Q 043295          112 G  112 (223)
Q Consensus       112 g  112 (223)
                      |
T Consensus        81 g   81 (230)
T 3guy_A           81 G   81 (230)
T ss_dssp             C
T ss_pred             C
Confidence            7

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.80  E-value=0.0085  Score=44.65  Aligned_cols=76  Identities=16%  Similarity=0.218  Sum_probs=49.8

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhCC--CCcc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      +++++|+   |++|.+.++.....|++|+.+++++++.+.+.+++   +... .  .|-.+.+++.+.+.+...  +++|
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   81 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            5688999   89999999988889999999999987765544233   3321 1  244443123332322211  3699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++++.|
T Consensus        82 ~lv~nAg   88 (256)
T 1geg_A           82 VIVNNAG   88 (256)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999886

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.80  E-value=0.0043  Score=41.59  Aligned_cols=73  Identities=15%  Similarity=0.119  Sum_probs=50.8

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      +++|+|.  |.+|...++.++..|++|+++++++++.+.++ +.+.. ++..+.. + .+.+.+..-+++|+++.+++.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-~~~~~-~~~~d~~-~-~~~l~~~~~~~~d~vi~~~~~   80 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-SYATH-AVIANAT-E-ENELLSLGIRNFEYVIVAIGA   80 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT-TTCSE-EEECCTT-C-HHHHHTTTGGGCSEEEECCCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HhCCE-EEEeCCC-C-HHHHHhcCCCCCCEEEECCCC
Confidence            4578888  99999999999999999999999888777666 55543 2222211 2 233333311269999999986

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.79  E-value=0.0027  Score=47.48  Aligned_cols=78  Identities=19%  Similarity=0.228  Sum_probs=51.5

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      -.++++||+   |++|.+.++.....|++|+.++++.++.+.+.+++   +....   .|-.+.++..+.+.+...  ++
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   89 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGK   89 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            357899999   89999999888888999999999988766554332   33221   233333122222322221  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        90 id~lv~nAg   98 (256)
T 3gaf_A           90 ITVLVNNAG   98 (256)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.78  E-value=0.0031  Score=47.72  Aligned_cols=77  Identities=16%  Similarity=0.287  Sum_probs=50.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CC---C-ee--eecCCcccHHHHHHHhCC--
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GF---D-DA--FNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~---~-~~--~~~~~~~~~~~~i~~~~~--  101 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++   +.   . ..  .|-.+.++..+.+.+...  
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   84 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            46788998   89999999888889999999999988776554333   22   1 11  244443122222332221  


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|+++++.|
T Consensus        85 g~iD~lv~nAg   95 (280)
T 1xkq_A           85 GKIDVLVNNAG   95 (280)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36999999886

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.78  E-value=0.0085  Score=46.23  Aligned_cols=95  Identities=14%  Similarity=0.113  Sum_probs=59.4

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecC---HHHHHHHHHhhC----C-CeeeecCCcccHHHHHHHhCCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGT---NEKVAILKEKLG----F-DDAFNYKEETDLKATLKRYFPDG  103 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~---~~~~~~~~~~~g----~-~~~~~~~~~~~~~~~i~~~~~~~  103 (223)
                      -.+++++|.  |++|.+++..+...|+ +|+.+.|+   .++.+.+.++++    . ..++++.+.+++.+.+.     .
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~  226 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIA-----E  226 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH-----T
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhc-----C
Confidence            468899999  8999999998889999 89999998   666655543432    2 12344433112333332     3


Q ss_pred             ccEEEcCCChHHH------HH-HHHhhccCcEEEEEcc
Q 043295          104 IDVYFDNVGGEML------EA-AVANMNLFGRVAACGV  134 (223)
Q Consensus       104 ~d~vid~~g~~~~------~~-~~~~l~~~G~~v~~g~  134 (223)
                      +|+||+|+.....      .. ....++++..++.+-.
T Consensus       227 aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY  264 (315)
T 3tnl_A          227 SVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVY  264 (315)
T ss_dssp             CSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCC
T ss_pred             CCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEecc
Confidence            8999999863111      01 2345666666666543

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.78  E-value=0.005  Score=46.46  Aligned_cols=77  Identities=12%  Similarity=0.249  Sum_probs=51.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CC---C-e--eeecCCcccHHHHHHHhCC--
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GF---D-D--AFNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~---~-~--~~~~~~~~~~~~~i~~~~~--  101 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++   +.   . .  ..|-.+.+++.+.+.+...  
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   84 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHHc
Confidence            46788998   89999999888889999999999988776655344   21   1 1  1243433123333332221  


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|+++++.|
T Consensus        85 g~id~lv~~Ag   95 (278)
T 1spx_A           85 GKLDILVNNAG   95 (278)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36999999887

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.77  E-value=0.004  Score=46.75  Aligned_cols=77  Identities=13%  Similarity=0.085  Sum_probs=50.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCCee----eecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFDDA----FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~~~----~~~~~~~~~~~~i~~~~~--~  102 (223)
                      .++++||+   +++|.+.++.....|++|+.++++.++.+.+.+++    +...+    .|-.+.++..+.+.+...  +
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLG   86 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            57889999   89999999988889999999999988766554332    22211    243333122222222211  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        87 ~id~lvnnAg   96 (265)
T 3lf2_A           87 CASILVNNAG   96 (265)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999887

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.77  E-value=0.0047  Score=46.42  Aligned_cols=75  Identities=16%  Similarity=0.219  Sum_probs=50.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh-----CCCe---eeecCCcccHHHHHHHhCCCCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL-----GFDD---AFNYKEETDLKATLKRYFPDGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~-----g~~~---~~~~~~~~~~~~~i~~~~~~~~  104 (223)
                      .++++||+   +++|.+.++.....|++|+.+++++++.+.+.+++     +...   ..|..+. +..+.+.+.. +++
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~-g~i   86 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTE-QGCQDVIEKY-PKV   86 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSH-HHHHHHHHHC-CCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCH-HHHHHHHHhc-CCC
Confidence            57889999   89999999888889999999999987765544232     1211   1233333 2233333322 369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        87 d~lv~nAg   94 (267)
T 3t4x_A           87 DILINNLG   94 (267)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.76  E-value=0.013  Score=43.74  Aligned_cols=94  Identities=18%  Similarity=0.138  Sum_probs=65.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++++||-. .|.|..++.+++ .|++|++++.++...+.+++.   .+..  +..... +..+.   ...+.+|+|+..
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~-~g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~-d~~~~---~~~~~fD~Vv~n  191 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEG-SLEAA---LPFGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEES-CHHHH---GGGCCEEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEEC-Chhhc---CcCCCCCEEEEC
Confidence            688899988 777998888777 477999999999887777632   3433  222222 33332   223479999875


Q ss_pred             CCh----HHHHHHHHhhccCcEEEEEccc
Q 043295          111 VGG----EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       111 ~g~----~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      ...    ..+....++|+++|.++..+..
T Consensus       192 ~~~~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          192 LYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHHcCCCCEEEEEeec
Confidence            532    3566778899999999987654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.76  E-value=0.0061  Score=45.90  Aligned_cols=78  Identities=15%  Similarity=0.145  Sum_probs=51.3

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhC--CCC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYF--PDG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~--~~~  103 (223)
                      -.+++++|+   |++|...++.....|++|+++++++++.+.+.+++   |... .  .|-.+.+.+.+.+.+..  -++
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  108 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD  108 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            456889999   89999999888889999999999987766544232   4321 1  23333312322232221  136


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|++|.+.|
T Consensus       109 iD~li~~Ag  117 (272)
T 1yb1_A          109 VSILVNNAG  117 (272)
T ss_dssp             CSEEEECCC
T ss_pred             CcEEEECCC
Confidence            999999887

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.76  E-value=0.0025  Score=47.84  Aligned_cols=77  Identities=14%  Similarity=0.095  Sum_probs=50.0

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHH-HHHHHhhCCCee-eecCCcccHHHHHHHhCC--CCccEE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKV-AILKEKLGFDDA-FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~-~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      -.++++||+   |++|.+.++.....|++|+.+++++++. +.+. +.++..+ .|-.+.++..+.+.+...  +++|++
T Consensus        25 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l  103 (260)
T 3gem_A           25 LSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELR-QAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAV  103 (260)
T ss_dssp             --CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHH-HHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH-hcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            456789999   8999999988888899999999887654 3344 5665322 344443122222222211  369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus       104 v~nAg  108 (260)
T 3gem_A          104 VHNAS  108 (260)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99887

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.75  E-value=0.0059  Score=45.63  Aligned_cols=77  Identities=16%  Similarity=0.237  Sum_probs=49.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH-HHHHHHhh----CCCee---eecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK-VAILKEKL----GFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~-~~~~~~~~----g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      +++++||+   |++|.+.++.....|++|+.+++++++ .+.+.+++    |....   .|-.+.+++.+.+.+...  +
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   82 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46788998   899999999888899999999988766 55443233    43221   243433123333332221  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        83 ~iD~lv~~Ag   92 (260)
T 1x1t_A           83 RIDILVNNAG   92 (260)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999886

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.74  E-value=0.0066  Score=45.44  Aligned_cols=77  Identities=19%  Similarity=0.270  Sum_probs=50.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCcccHHH---HHHHhCCCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETDLKA---TLKRYFPDG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~---~i~~~~~~~  103 (223)
                      .++++||+   |++|...++.....|++|+.+++++++.+.+.+++   +....   .|-.+.+++.+   .+.+..+++
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   92 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   92 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            56789999   89999999888889999999999987765543232   33211   23333212222   222223246


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|++|++.|
T Consensus        93 id~li~~Ag  101 (266)
T 1xq1_A           93 LDILINNLG  101 (266)
T ss_dssp             CSEEEEECC
T ss_pred             CcEEEECCC
Confidence            999999887

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.74  E-value=0.005  Score=46.04  Aligned_cols=103  Identities=13%  Similarity=0.092  Sum_probs=65.0

Q ss_pred             CCCEEEEE---C--chHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCee----eecCCcccHHHHHHHhCC--
Q 043295           36 KGEKVFVS---G--AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDA----FNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        36 ~g~~vlI~---g--~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~----~~~~~~~~~~~~i~~~~~--  101 (223)
                      +|++++|+   |  ++|.+.++.....|++|+.++++++..+.+.+   +++...+    .|-.+.++..+.+.+...  
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            57899999   3  79999999999999999999999876665542   3333221    233333122222222222  


Q ss_pred             CCccEEEcCCCh---------------HHHH---------------HHHHhhccCcEEEEEcccccc
Q 043295          102 DGIDVYFDNVGG---------------EMLE---------------AAVANMNLFGRVAACGVISEC  138 (223)
Q Consensus       102 ~~~d~vid~~g~---------------~~~~---------------~~~~~l~~~G~~v~~g~~~~~  138 (223)
                      +++|+++++.|.               +.+.               .....++.+|++|.++...+.
T Consensus        85 G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~  151 (256)
T 4fs3_A           85 GNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGE  151 (256)
T ss_dssp             CCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGT
T ss_pred             CCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccc
Confidence            369999988762               0111               123355678999998876553

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.74  E-value=0.0053  Score=45.03  Aligned_cols=76  Identities=16%  Similarity=0.159  Sum_probs=50.6

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CCccEEEc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DGIDVYFD  109 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~~d~vid  109 (223)
                      +++++|+   |++|...++.....|++|+.+++++++.+.+.++++-...  .|-.+.+++.+.+.+...  +++|++++
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~   84 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALVN   84 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5678998   8999999988888999999999998887766534432122  233333123322222211  26999999


Q ss_pred             CCC
Q 043295          110 NVG  112 (223)
Q Consensus       110 ~~g  112 (223)
                      +.|
T Consensus        85 ~Ag   87 (234)
T 2ehd_A           85 NAG   87 (234)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            887

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.74  E-value=0.0052  Score=45.52  Aligned_cols=77  Identities=19%  Similarity=0.318  Sum_probs=49.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEec-CHHHHHHHHHhh---CCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-TNEKVAILKEKL---GFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .+++++|+   |++|.+.++.....|++|+.+++ ++++.+.+.+++   +....   .|-.+.+++.+.+.+...  ++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ   82 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46788999   89999999988889999999998 776655443232   43211   243333123332332221  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        83 id~lv~nAg   91 (246)
T 2uvd_A           83 VDILVNNAG   91 (246)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.74  E-value=0.0099  Score=44.23  Aligned_cols=77  Identities=13%  Similarity=0.171  Sum_probs=50.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .++++||+   |++|...++.....|++|+.+++++++.+.+.+++   +... .  .|-.+.+++.+.+.+...  +++
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   91 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRV   91 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            57889999   89999999888888999999999887655443232   4321 1  233333123333332211  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++.+.|
T Consensus        92 d~vi~~Ag   99 (260)
T 3awd_A           92 DILVACAG   99 (260)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999876

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.74  E-value=0.0035  Score=47.97  Aligned_cols=78  Identities=17%  Similarity=0.313  Sum_probs=50.9

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CC---C-ee--eecCCcccHHHHHHHhCC-
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GF---D-DA--FNYKEETDLKATLKRYFP-  101 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~---~-~~--~~~~~~~~~~~~i~~~~~-  101 (223)
                      -.++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++   +.   . ..  .|-.+.++..+.+.+... 
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            356889999   89999999888889999999999988766554233   22   1 11  243433122222322211 


Q ss_pred             -CCccEEEcCCC
Q 043295          102 -DGIDVYFDNVG  112 (223)
Q Consensus       102 -~~~d~vid~~g  112 (223)
                       +++|+++++.|
T Consensus       104 ~g~iD~lvnnAG  115 (297)
T 1xhl_A          104 FGKIDILVNNAG  115 (297)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence             36999999887

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.74  E-value=0.0054  Score=45.01  Aligned_cols=97  Identities=18%  Similarity=0.178  Sum_probs=63.0

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      -.+.+|||+   |++|..+++.+...|++|+++++++++.+.+. ..++..++.. +   +.+.+.+..+ ++|+||.+.
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~-~~~~~~~~~~-D---l~~~~~~~~~-~~D~vi~~a   92 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELR-ERGASDIVVA-N---LEEDFSHAFA-SIDAVVFAA   92 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HTTCSEEEEC-C---TTSCCGGGGT-TCSEEEECC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHH-hCCCceEEEc-c---cHHHHHHHHc-CCCEEEECC
Confidence            457899999   89999999888889999999999999888777 5565122211 1   1122333332 699999998


Q ss_pred             ChH-------H-------HHHHHHhhc--cCcEEEEEccccc
Q 043295          112 GGE-------M-------LEAAVANMN--LFGRVAACGVISE  137 (223)
Q Consensus       112 g~~-------~-------~~~~~~~l~--~~G~~v~~g~~~~  137 (223)
                      |..       .       ....++.+.  ..++++.++....
T Consensus        93 g~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  134 (236)
T 3e8x_A           93 GSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT  134 (236)
T ss_dssp             CCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred             CCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            831       0       112333332  2378998887554

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=96.74  E-value=0.022  Score=45.41  Aligned_cols=96  Identities=16%  Similarity=0.182  Sum_probs=66.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      ++|++||=. ++.|..++.+++. |++|++++.++..++.+++.   .|.+.-+.  .. +..+.+....+ .||+|+--
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~~~~~--~~-D~~~~l~~~~~-~fD~Ii~d  287 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLRVDIR--HG-EALPTLRGLEG-PFHHVLLD  287 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCCEEE--ES-CHHHHHHTCCC-CEEEEEEC
T ss_pred             cCCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCCCcEE--Ec-cHHHHHHHhcC-CCCEEEEC
Confidence            568998888 8889999988885 88899999999988877642   35432222  22 44444444433 49988742


Q ss_pred             CCh----------------HHHHHHHHhhccCcEEEEEccc
Q 043295          111 VGG----------------EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       111 ~g~----------------~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      ...                ..+..++++|++||.++.+...
T Consensus       288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS  328 (393)
T ss_dssp             CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            221                3466778899999999877654

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.73  E-value=0.0083  Score=44.79  Aligned_cols=78  Identities=18%  Similarity=0.237  Sum_probs=50.4

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      -.++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++   +....   .|-.+.++..+.+.+...  ++
T Consensus        12 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   91 (260)
T 2zat_A           12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGG   91 (260)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            357889999   89999999888889999999999987765443232   33211   233333122222222211  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        92 iD~lv~~Ag  100 (260)
T 2zat_A           92 VDILVSNAA  100 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999876

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.73  E-value=0.0075  Score=45.37  Aligned_cols=77  Identities=16%  Similarity=0.275  Sum_probs=50.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC---ee--eecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD---DA--FNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~---~~--~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      .++++||+   |++|...++.....|++|+.++++.++.+.+.++++..   ..  .|-.+.+++.+.+.+...  +++|
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   94 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   94 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            56889999   89999999888888999999999887765554355431   11  233333123322322211  3699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      ++|++.|
T Consensus        95 ~li~~Ag  101 (278)
T 2bgk_A           95 IMFGNVG  101 (278)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9998876

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.72  E-value=0.029  Score=39.26  Aligned_cols=94  Identities=17%  Similarity=0.144  Sum_probs=65.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCC-CeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGF-DDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~-~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .++.+||-. .|.|..+..+++.. .+|++++.++...+.+++.   .+. ..+ ..... +..+.+...  +.+|+|+.
T Consensus        32 ~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~~~-d~~~~~~~~--~~~D~v~~  106 (192)
T 1l3i_A           32 GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNV-TLMEG-DAPEALCKI--PDIDIAVV  106 (192)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTE-EEEES-CHHHHHTTS--CCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcce-EEEec-CHHHhcccC--CCCCEEEE
Confidence            788899988 67799988888876 8999999999888777732   343 222 11122 333322211  36999986


Q ss_pred             CCC----hHHHHHHHHhhccCcEEEEEc
Q 043295          110 NVG----GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       110 ~~g----~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ...    ...+..+.+.|+++|.++...
T Consensus       107 ~~~~~~~~~~l~~~~~~l~~gG~l~~~~  134 (192)
T 1l3i_A          107 GGSGGELQEILRIIKDKLKPGGRIIVTA  134 (192)
T ss_dssp             SCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCchHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            544    246778888999999998764

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.71  E-value=0.0041  Score=46.24  Aligned_cols=72  Identities=25%  Similarity=0.409  Sum_probs=50.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH--HHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC-CCccE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN--EKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP-DGIDV  106 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~--~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~~d~  106 (223)
                      +|+.+||+   +++|.+.++.....|++|+.++++.  +..+.++ +.|....   .|-.+. .   .+++... +++|+
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~-~~g~~~~~~~~Dv~d~-~---~v~~~~~~g~iDi   82 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIA-KDGGNASALLIDFADP-L---AAKDSFTDAGFDI   82 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH-HTTCCEEEEECCTTST-T---TTTTSSTTTCCCE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHH-HhCCcEEEEEccCCCH-H---HHHHHHHhCCCCE
Confidence            58899999   8999999999999999999999774  3345555 5665332   233332 1   2233333 38999


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ++++.|
T Consensus        83 LVNNAG   88 (247)
T 4hp8_A           83 LVNNAG   88 (247)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999887

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.70  E-value=0.0062  Score=45.20  Aligned_cols=76  Identities=14%  Similarity=0.224  Sum_probs=49.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH-HHHH-HHHHhhCCCee---eecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN-EKVA-ILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~-~~~~-~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      .+++++|+   |++|.+.++.....|++|+.+++++ ++.+ .++ +.+....   .|-.+.++..+.+.+...  +++|
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIR-NLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   84 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH-HTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHH-hcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCC
Confidence            46789999   8999999988888999999999887 6554 344 4554221   243333123222222211  3699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++++.|
T Consensus        85 ~lv~nAg   91 (249)
T 2ew8_A           85 ILVNNAG   91 (249)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999886

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=96.70  E-value=0.028  Score=40.33  Aligned_cols=95  Identities=18%  Similarity=0.148  Sum_probs=64.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      .++.+||-. ++.|..+..+++..  +.+|++++.++...+.+++.   .|...-+..... +..+.+.. ..+ ||+|+
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~-~~~-fD~v~  131 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVG-DPLGIAAG-QRD-IDILF  131 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEES-CHHHHHTT-CCS-EEEEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEe-cHHHHhcc-CCC-CCEEE
Confidence            677898888 88999999999976  57999999999888777632   343221111111 33333222 234 99987


Q ss_pred             cCCC----hHHHHHHHHhhccCcEEEEE
Q 043295          109 DNVG----GEMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       109 d~~g----~~~~~~~~~~l~~~G~~v~~  132 (223)
                      -...    ...+..+.+.|++||.++.-
T Consensus       132 ~~~~~~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          132 MDCDVFNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             EETTTSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EcCChhhhHHHHHHHHHhcCCCeEEEEE
Confidence            4322    13577888999999998864

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.70  E-value=0.0046  Score=46.65  Aligned_cols=78  Identities=18%  Similarity=0.342  Sum_probs=52.0

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCcccHHHHHHHhC--CCC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETDLKATLKRYF--PDG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~--~~~  103 (223)
                      -.++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++   |....   .|-.+.++..+.+.+..  .++
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            467899999   89999999988889999999999988766554333   33221   23333312222222221  136


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus       104 iD~lv~nAg  112 (271)
T 4ibo_A          104 VDILVNNAG  112 (271)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=96.69  E-value=0.028  Score=40.79  Aligned_cols=97  Identities=15%  Similarity=0.080  Sum_probs=63.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCC----CCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFP----DGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~----~~~  104 (223)
                      .++.+||-. .+.|..++.+++..  +.+|++++.++...+.+++   ..|...-+..... +..+.+.....    +.|
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~l~~~~~~~~~~~f  135 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNG-ASQDLIPQLKKKYDVDTL  135 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-CHHHHGGGTTTTSCCCCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEEC-CHHHHHHHHHHhcCCCce
Confidence            678899888 88899999999975  6799999999998877763   2454321222222 34444433332    369


Q ss_pred             cEEEcCCC-hHH------HHHHHHhhccCcEEEEEc
Q 043295          105 DVYFDNVG-GEM------LEAAVANMNLFGRVAACG  133 (223)
Q Consensus       105 d~vid~~g-~~~------~~~~~~~l~~~G~~v~~g  133 (223)
                      |+|+-... ...      +... ++|++||.++.-.
T Consensus       136 D~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~  170 (221)
T 3u81_A          136 DMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADN  170 (221)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESC
T ss_pred             EEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeC
Confidence            98864333 211      1222 7899999987643

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.69  E-value=0.0059  Score=46.02  Aligned_cols=77  Identities=14%  Similarity=0.099  Sum_probs=49.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEec-CHHHHHHHHHhh----CCCee---eecCCc----ccHHHHHHHhC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-TNEKVAILKEKL----GFDDA---FNYKEE----TDLKATLKRYF  100 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-~~~~~~~~~~~~----g~~~~---~~~~~~----~~~~~~i~~~~  100 (223)
                      .++++||+   |++|.+.++.....|++|+.+++ ++++.+.+.+++    +....   .|-.+.    +.+.+.+.+..
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   89 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSF   89 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHH
Confidence            46788999   89999999888889999999999 877765554333    43211   233332    12332222221


Q ss_pred             C--CCccEEEcCCC
Q 043295          101 P--DGIDVYFDNVG  112 (223)
Q Consensus       101 ~--~~~d~vid~~g  112 (223)
                      .  +++|+++++.|
T Consensus        90 ~~~g~id~lv~nAg  103 (276)
T 1mxh_A           90 RAFGRCDVLVNNAS  103 (276)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence            1  36999999887

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=96.69  E-value=0.017  Score=42.48  Aligned_cols=91  Identities=13%  Similarity=0.135  Sum_probs=64.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcC---
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN---  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~---  110 (223)
                      +++.+||=. +|.|..+..+++. |++|++++.++...+.++ +. . ..+   .. +..+.+.....+.+|+|+..   
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~-~~-~-~~~---~~-d~~~~~~~~~~~~fD~i~~~~~l  111 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCE-GK-F-NVV---KS-DAIEYLKSLPDKYLDGVMISHFV  111 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHH-TT-S-EEE---CS-CHHHHHHTSCTTCBSEEEEESCG
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHH-hh-c-cee---ec-cHHHHhhhcCCCCeeEEEECCch
Confidence            577888888 8889988888776 889999999999988888 43 1 222   22 33333333333479999752   


Q ss_pred             --CCh----HHHHHHHHhhccCcEEEEEc
Q 043295          111 --VGG----EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       111 --~g~----~~~~~~~~~l~~~G~~v~~g  133 (223)
                        +..    ..+..+.++|++||.++...
T Consensus       112 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (240)
T 3dli_A          112 EHLDPERLFELLSLCYSKMKYSSYIVIES  140 (240)
T ss_dssp             GGSCGGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred             hhCCcHHHHHHHHHHHHHcCCCcEEEEEe
Confidence              231    35778889999999998754

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.69  E-value=0.0022  Score=48.32  Aligned_cols=77  Identities=13%  Similarity=0.133  Sum_probs=49.4

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-eeeecCCcccHHHHHHHhCC--CCccEEE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DAFNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      -.++++||+   |++|.+.++.....|++|+.++++.++.+.+. .-... ...|-.+.++..+.+.+...  +++|+++
T Consensus        14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv   92 (266)
T 3p19_A           14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN-LPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIV   92 (266)
T ss_dssp             -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC-CTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh-cCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEE
Confidence            356889999   89999999988889999999999887755432 11111 11233333123333332221  3699999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        93 nnAg   96 (266)
T 3p19_A           93 NNAG   96 (266)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9887

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.69  E-value=0.0047  Score=46.08  Aligned_cols=75  Identities=19%  Similarity=0.199  Sum_probs=49.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CCccEEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++ +.+.++++. ..  .|-.+.+++.+.+.+...  +++|+++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv   82 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVLV   82 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            46789999   899999998888899999999988777 444335542 22  233333123333332211  3699999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        83 ~~Ag   86 (256)
T 2d1y_A           83 NNAA   86 (256)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9887

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=96.68  E-value=0.019  Score=43.10  Aligned_cols=95  Identities=12%  Similarity=0.143  Sum_probs=64.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc---CCeEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG---GCYVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~---g~~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      ++|.+||=. .|.|..+..+++..   |++|++++.++.-++.+++.+   +...-+..... +.    .+..-+.+|+|
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~-D~----~~~~~~~~d~v  143 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEG-DI----RDIAIENASMV  143 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-CT----TTCCCCSEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeec-cc----ccccccccccc
Confidence            789999999 88999999999875   679999999999888887433   32211111111 11    11222358877


Q ss_pred             EcCCC-----h----HHHHHHHHhhccCcEEEEEcc
Q 043295          108 FDNVG-----G----EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       108 id~~g-----~----~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      +-...     .    ..+....+.|+|||.++....
T Consensus       144 ~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          144 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence            64322     1    247788899999999988653

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.68  E-value=0.0021  Score=47.71  Aligned_cols=100  Identities=16%  Similarity=0.177  Sum_probs=64.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC-CeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF-DDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      .|+++||+   +++|.+.++.....|++|+.+++++++.+... .-.+ ....|-.+. +-.+.+-+.. +++|+++++.
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~-~~~~~~~~~Dv~~~-~~v~~~~~~~-g~iDiLVNNA   86 (242)
T 4b79_A           10 AGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPR-HPRIRREELDITDS-QRLQRLFEAL-PRLDVLVNNA   86 (242)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCC-CTTEEEEECCTTCH-HHHHHHHHHC-SCCSEEEECC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhh-cCCeEEEEecCCCH-HHHHHHHHhc-CCCCEEEECC
Confidence            58999999   89999999999999999999998877654322 1111 112344443 2233333333 3699999988


Q ss_pred             Ch--H-------HHH---------------HHHHhhc-cCcEEEEEcccccc
Q 043295          112 GG--E-------MLE---------------AAVANMN-LFGRVAACGVISEC  138 (223)
Q Consensus       112 g~--~-------~~~---------------~~~~~l~-~~G~~v~~g~~~~~  138 (223)
                      |-  +       .++               .+...|+ .+|++|.++...+.
T Consensus        87 Gi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~  138 (242)
T 4b79_A           87 GISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYST  138 (242)
T ss_dssp             CCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGT
T ss_pred             CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            72  1       111               2334553 57999999876553

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=96.68  E-value=0.007  Score=44.80  Aligned_cols=77  Identities=10%  Similarity=0.103  Sum_probs=50.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC---Cee--eecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF---DDA--FNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~---~~~--~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      ++++++|+   |++|...++.....|++|+.+++++++.+.+.+++..   -..  .|..+.+++.+.+.+...  +++|
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   84 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS   84 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            46789999   8999999988888899999999998877665434432   111  233333122222222211  2699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      ++|.+.|
T Consensus        85 ~li~~Ag   91 (251)
T 1zk4_A           85 TLVNNAG   91 (251)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999886

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.67  E-value=0.003  Score=47.14  Aligned_cols=94  Identities=9%  Similarity=0.013  Sum_probs=66.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC--ee--eecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD--DA--FNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~--~~--~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .++.+||-. +|.|..+..+++..|++|++++.++...+.++ +....  .+  +..+-. ++     ....+.+|+|+.
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~d~~-~~-----~~~~~~fD~v~~  126 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMAN-ERVSGNNKIIFEANDIL-TK-----EFPENNFDLIYS  126 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HTCCSCTTEEEEECCTT-TC-----CCCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHhhcCCCeEEEECccc-cC-----CCCCCcEEEEeH
Confidence            678899999 88999999999988999999999999999988 44321  11  111111 10     111237999986


Q ss_pred             CCC------h---HHHHHHHHhhccCcEEEEEccc
Q 043295          110 NVG------G---EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       110 ~~g------~---~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .-.      .   ..+..+.+.|+|||.++.....
T Consensus       127 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  161 (266)
T 3ujc_A          127 RDAILALSLENKNKLFQKCYKWLKPTGTLLITDYC  161 (266)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            432      1   2467888899999999887643

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.66  E-value=0.0093  Score=44.00  Aligned_cols=77  Identities=21%  Similarity=0.433  Sum_probs=50.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh----hCCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK----LGFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      ++++++|+   |++|...++.....|++|+.+++++++.+.+.++    .+....   .|..+.+++.+.+.+...  ++
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDG   85 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            46788999   8999999988888999999999998776655422    243211   233333123322322211  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|++|.+.|
T Consensus        86 ~d~vi~~Ag   94 (248)
T 2pnf_A           86 IDILVNNAG   94 (248)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.66  E-value=0.0093  Score=44.99  Aligned_cols=93  Identities=10%  Similarity=0.016  Sum_probs=60.1

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -++++++|.  |++|.++++.+...|++|+.+.++.++.+.+.++++....++..+   + +.+.+   +++|++++|++
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~---~-~~~~~---~~~DivVn~t~  189 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALS---M-DELEG---HEFDLIINATS  189 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECC---S-GGGTT---CCCSEEEECCS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEec---H-HHhcc---CCCCEEEECCC
Confidence            467899999  899999999999999999999999888766654655311111111   1 11111   46999999998


Q ss_pred             hHHHH----HHHHhhccCcEEEEEcc
Q 043295          113 GEMLE----AAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 ~~~~~----~~~~~l~~~G~~v~~g~  134 (223)
                      .....    .....+.++..++.+..
T Consensus       190 ~~~~~~~~~i~~~~l~~~~~v~D~~y  215 (271)
T 1nyt_A          190 SGISGDIPAIPSSLIHPGIYCYDMFY  215 (271)
T ss_dssp             CGGGTCCCCCCGGGCCTTCEEEESCC
T ss_pred             CCCCCCCCCCCHHHcCCCCEEEEecc
Confidence            53221    01234556666666654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.65  E-value=0.0062  Score=45.64  Aligned_cols=78  Identities=24%  Similarity=0.375  Sum_probs=51.2

Q ss_pred             hCCCEEEEE---C-chHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee----eecCCcccHHHHHHHhCC--
Q 043295           35 QKGEKVFVS---G-AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA----FNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        35 ~~g~~vlI~---g-~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~----~~~~~~~~~~~~i~~~~~--  101 (223)
                      -.++++||+   | ++|.+.++.....|++|+.++++.++.+.+.+++   +...+    .|-.+.++..+.+.+...  
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            457899999   4 6999999888888999999999988776655344   21111    243433123222322221  


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|+++++.|
T Consensus       100 g~id~li~~Ag  110 (266)
T 3o38_A          100 GRLDVLVNNAG  110 (266)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCcEEEECCC
Confidence            26999999887

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.65  E-value=0.02  Score=44.19  Aligned_cols=94  Identities=13%  Similarity=0.086  Sum_probs=66.0

Q ss_pred             CEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCC---eeeecCCcccHHHHHHHhCCCCccEEEc-CC
Q 043295           38 EKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFD---DAFNYKEETDLKATLKRYFPDGIDVYFD-NV  111 (223)
Q Consensus        38 ~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~i~~~~~~~~d~vid-~~  111 (223)
                      .+||+. +|.|..+..+++.. +.+|+++..++.-.+.+++.++..   .+ ..... +..+.+....++.||+|+- ..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv-~v~~~-Da~~~l~~~~~~~fDvIi~D~~  168 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRV-KIRVD-DARMVAESFTPASRDVIIRDVF  168 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTE-EEEES-CHHHHHHTCCTTCEEEEEECCS
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCce-EEEEC-cHHHHHhhccCCCCCEEEECCC
Confidence            399999 89999999999965 779999999999999998555431   11 11112 4444454443447998864 22


Q ss_pred             C----------hHHHHHHHHhhccCcEEEEEc
Q 043295          112 G----------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 g----------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      .          .+.+..+.++|+++|.++.-.
T Consensus       169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            1          235788889999999988654

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.65  E-value=0.0083  Score=45.27  Aligned_cols=75  Identities=13%  Similarity=0.273  Sum_probs=51.1

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC--C-ee--eecCCcccHHHHHHHhCC--CCccEE
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF--D-DA--FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~--~-~~--~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      +++||+   |++|.+.++.....|++|+.+++++++.+.+.+++..  . ..  .|-.+.++..+.+.+...  +++|++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  101 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGL  101 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            678888   8999999998888999999999998887766545432  1 11  244443233333333322  268999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus       102 vnnAG  106 (272)
T 2nwq_A          102 INNAG  106 (272)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99886

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.0096  Score=45.30  Aligned_cols=78  Identities=15%  Similarity=0.218  Sum_probs=53.3

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCC---eEEEEecCHHHHHHHHHhh-----CCCe---eeecCCcccHHHHHHHhC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGC---YVVGSAGTNEKVAILKEKL-----GFDD---AFNYKEETDLKATLKRYF  100 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~---~v~~~~~~~~~~~~~~~~~-----g~~~---~~~~~~~~~~~~~i~~~~  100 (223)
                      -.++++||+   +++|.+.++.....|+   +|+.++++.++.+.+.+++     +...   ..|-.+.++..+.+.+..
T Consensus        31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~  110 (287)
T 3rku_A           31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP  110 (287)
T ss_dssp             HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            467899999   8999988877666676   9999999988877665343     3211   134444434444454443


Q ss_pred             CC--CccEEEcCCC
Q 043295          101 PD--GIDVYFDNVG  112 (223)
Q Consensus       101 ~~--~~d~vid~~g  112 (223)
                      ..  ++|+++++.|
T Consensus       111 ~~~g~iD~lVnnAG  124 (287)
T 3rku_A          111 QEFKDIDILVNNAG  124 (287)
T ss_dssp             GGGCSCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence            32  7999999887

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.65  E-value=0.004  Score=45.44  Aligned_cols=87  Identities=8%  Similarity=0.046  Sum_probs=55.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      .++++||+   +++|.+.++.....|++|+.++++.+              .|-.+.++..+.+.++  +++|+++++.|
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~--------------~D~~~~~~v~~~~~~~--g~id~lv~nAg   68 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG--------------LDISDEKSVYHYFETI--GAFDHLIVTAG   68 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT--------------CCTTCHHHHHHHHHHH--CSEEEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc--------------cCCCCHHHHHHHHHHh--CCCCEEEECCC
Confidence            46788999   89999999888888999999987643              2223321233333333  45888888776


Q ss_pred             hH------------H---------------HHHHHHhhccCcEEEEEcccccc
Q 043295          113 GE------------M---------------LEAAVANMNLFGRVAACGVISEC  138 (223)
Q Consensus       113 ~~------------~---------------~~~~~~~l~~~G~~v~~g~~~~~  138 (223)
                      ..            .               .+.+...++++|+++.++.....
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~  121 (223)
T 3uce_A           69 SYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSR  121 (223)
T ss_dssp             CCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGT
T ss_pred             CCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhc
Confidence            21            1               12233455667899998866543

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.65  E-value=0.012  Score=43.88  Aligned_cols=77  Identities=13%  Similarity=0.198  Sum_probs=51.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHh---CCCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRY---FPDG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~---~~~~  103 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.+++   |... .  .|-.+.++....+.+.   ..++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   83 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGR   83 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            46788999   89999999988889999999999987765544333   4321 1  2434331233333332   1347


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        84 id~lvnnAg   92 (260)
T 2qq5_A           84 LDVLVNNAY   92 (260)
T ss_dssp             CCEEEECCC
T ss_pred             ceEEEECCc
Confidence            999999984

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.64  E-value=0.0078  Score=45.92  Aligned_cols=77  Identities=12%  Similarity=0.197  Sum_probs=50.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCCee---eecCCcccHHHHHHHhC--CCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFDDA---FNYKEETDLKATLKRYF--PDG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~~~---~~~~~~~~~~~~i~~~~--~~~  103 (223)
                      .+++++|+   |++|.+.++.....|++|+.++++.++.+.+.+++    +....   .|-.+.+++.+.+.+..  .++
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  104 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            56789999   89999999888889999999999987765544233    43211   23333312333232221  136


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|++|++.|
T Consensus       105 id~li~~Ag  113 (302)
T 1w6u_A          105 PNIVINNAA  113 (302)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999887

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.64  E-value=0.0055  Score=46.84  Aligned_cols=77  Identities=19%  Similarity=0.265  Sum_probs=49.7

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee----eecCCc-ccHH---HHHHHhC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA----FNYKEE-TDLK---ATLKRYF  100 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~----~~~~~~-~~~~---~~i~~~~  100 (223)
                      ..++++||+   |++|.+.++.....|++|+.++++.++.+.+.+++   +...+    .|-.+. +...   +.+.+..
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            457889999   89999999888888999999999988765544333   22111    233332 1222   2222222


Q ss_pred             CCCccEEEcCCC
Q 043295          101 PDGIDVYFDNVG  112 (223)
Q Consensus       101 ~~~~d~vid~~g  112 (223)
                       +++|++|++.|
T Consensus        90 -g~iD~lv~nAg  100 (311)
T 3o26_A           90 -GKLDILVNNAG  100 (311)
T ss_dssp             -SSCCEEEECCC
T ss_pred             -CCCCEEEECCc
Confidence             36999999998

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.64  E-value=0.014  Score=44.27  Aligned_cols=94  Identities=12%  Similarity=0.050  Sum_probs=60.2

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCC----CeeeecCCcccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGF----DDAFNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      -.+++++|.  |++|.+++..+...|+ +|+.+.++.++.+.+.++++.    ..+...... ++.+.+.+     +|+|
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~-~l~~~l~~-----~DiV  198 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDAR-GIEDVIAA-----ADGV  198 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECST-THHHHHHH-----SSEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHH-HHHHHHhc-----CCEE
Confidence            468899999  9999999988888999 799999998887765434432    112122212 44444433     8999


Q ss_pred             EcCCChHHH-----HHHHHhhccCcEEEEEcc
Q 043295          108 FDNVGGEML-----EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       108 id~~g~~~~-----~~~~~~l~~~G~~v~~g~  134 (223)
                      ++|+.....     ......++++..++.+-.
T Consensus       199 InaTp~Gm~~~~~~pi~~~~l~~~~~v~DlvY  230 (283)
T 3jyo_A          199 VNATPMGMPAHPGTAFDVSCLTKDHWVGDVVY  230 (283)
T ss_dssp             EECSSTTSTTSCSCSSCGGGCCTTCEEEECCC
T ss_pred             EECCCCCCCCCCCCCCCHHHhCCCCEEEEecC
Confidence            999863110     112345666666665543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.64  E-value=0.04  Score=36.51  Aligned_cols=74  Identities=15%  Similarity=0.111  Sum_probs=50.5

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee-ecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF-NYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      +.+|+|.  |.+|...++.....|.+|+++++++++.+.+.+.+|...+. |..+    .+.+.+..-.++|+|+-|++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~----~~~l~~~~~~~~d~vi~~~~~   79 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTK----IKTLEDAGIEDADMYIAVTGK   79 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTS----HHHHHHTTTTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCC----HHHHHHcCcccCCEEEEeeCC
Confidence            4578888  99999999888888999999999988887776345653221 2222    122332212269999999986


Q ss_pred             H
Q 043295          114 E  114 (223)
Q Consensus       114 ~  114 (223)
                      +
T Consensus        80 ~   80 (140)
T 1lss_A           80 E   80 (140)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.64  E-value=0.0069  Score=44.82  Aligned_cols=76  Identities=17%  Similarity=0.157  Sum_probs=49.7

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCC-ee--eecCCcccHHHHHHHhCC--CCc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFD-DA--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~-~~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      +++++|+   |++|...+......|++|+.+++++++.+.+.+++    +.. ..  .|-.+.+++.+.+.+...  +++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI   81 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            5788999   89999999888889999999999988776654344    221 11  233333123333322211  269


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |++|++.|
T Consensus        82 d~li~~Ag   89 (250)
T 2cfc_A           82 DVLVNNAG   89 (250)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999886

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.59  E-value=0.016  Score=41.73  Aligned_cols=94  Identities=18%  Similarity=0.139  Sum_probs=65.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-  112 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-  112 (223)
                      .++.+||-. +|.|..+..+++. |.+|++++.++...+.++ +.+...+- .... +..+ .  ...+.+|+|+.... 
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~-~~~~~~~~-~~~~-d~~~-~--~~~~~~D~v~~~~~l  117 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAG-RHGLDNVE-FRQQ-DLFD-W--TPDRQWDAVFFAHWL  117 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHG-GGCCTTEE-EEEC-CTTS-C--CCSSCEEEEEEESCG
T ss_pred             CCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHH-hcCCCCeE-EEec-cccc-C--CCCCceeEEEEechh
Confidence            667888888 7889999999888 889999999999999998 66643321 1111 1111 1  12237999985432 


Q ss_pred             ----h----HHHHHHHHhhccCcEEEEEccc
Q 043295          113 ----G----EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       113 ----~----~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                          .    ..+..+.+.|+++|.++.....
T Consensus       118 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          118 AHVPDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence                1    2467788899999999887643

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.59  E-value=0.013  Score=44.95  Aligned_cols=99  Identities=11%  Similarity=0.097  Sum_probs=66.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||-. +|.|..+..+++..|++|++++.++...+.+++.   .|...-+..... +..+ + ....+.+|+|+..
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-~-~~~~~~fD~V~~~  192 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC-NMLD-T-PFDKGAVTASWNN  192 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-CTTS-C-CCCTTCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC-Chhc-C-CCCCCCEeEEEEC
Confidence            567899888 8889999999998899999999999988777632   343211111111 1110 0 0112379999753


Q ss_pred             -----CC-hHHHHHHHHhhccCcEEEEEcccc
Q 043295          111 -----VG-GEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       111 -----~g-~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                           .+ ...+..+.++|++||+++......
T Consensus       193 ~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          193 ESTMYVDLHDLFSEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             SCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CchhhCCHHHHHHHHHHHcCCCcEEEEEEccc
Confidence                 22 246888899999999999876443

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=96.58  E-value=0.0075  Score=45.14  Aligned_cols=77  Identities=17%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHH-cCCeEEEEecCHHHHHHHHHhh---CCC-ee--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKL-GGCYVVGSAGTNEKVAILKEKL---GFD-DA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~-~g~~v~~~~~~~~~~~~~~~~~---g~~-~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      +++++||+   |++|...++.... .|++|+.++++.++.+.+.+++   +.. ..  .|-.+.+++.+.+.+...  ++
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   82 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            56789999   8999998887777 8999999999887665443233   321 11  233332123322322211  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|++|.+.|
T Consensus        83 id~li~~Ag   91 (276)
T 1wma_A           83 LDVLVNNAG   91 (276)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999886

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.57  E-value=0.011  Score=43.83  Aligned_cols=77  Identities=18%  Similarity=0.262  Sum_probs=49.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .++++||+   |++|...++.....|++|+++++++++.+.+.+++   +... .  .|-.+.+.+.+.+.+...  +++
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   89 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            56889999   89999999888888999999999987765443232   3321 1  233333122222222211  269


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |++|.+.|
T Consensus        90 d~vi~~Ag   97 (255)
T 1fmc_A           90 DILVNNAG   97 (255)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999887

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.57  E-value=0.0077  Score=49.29  Aligned_cols=89  Identities=15%  Similarity=0.118  Sum_probs=65.6

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -.|++|.|.  |.+|..+++.++.+|++|+++++++.+..... ..|... .      ++.+.+.     ..|+|+-+++
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-~~G~~~-~------~l~ell~-----~aDiVi~~~~  341 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAA-MEGYRV-V------TMEYAAD-----KADIFVTATG  341 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-TTTCEE-C------CHHHHTT-----TCSEEEECSS
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-HcCCEe-C------CHHHHHh-----cCCEEEECCC
Confidence            468899999  99999999999999999999999887643444 455521 1      3333332     3899998876


Q ss_pred             hH-HH-HHHHHhhccCcEEEEEcccc
Q 043295          113 GE-ML-EAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       113 ~~-~~-~~~~~~l~~~G~~v~~g~~~  136 (223)
                      .. .+ ...+..|++++.++.++..+
T Consensus       342 t~~lI~~~~l~~MK~gAilINvgrg~  367 (494)
T 3d64_A          342 NYHVINHDHMKAMRHNAIVCNIGHFD  367 (494)
T ss_dssp             SSCSBCHHHHHHCCTTEEEEECSSSS
T ss_pred             cccccCHHHHhhCCCCcEEEEcCCCc
Confidence            43 22 46778999999999888643

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.57  E-value=0.014  Score=43.97  Aligned_cols=96  Identities=15%  Similarity=0.105  Sum_probs=66.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHhh----C--CCeeeecCCcccHHHHHHHhCCCCcc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEKL----G--FDDAFNYKEETDLKATLKRYFPDGID  105 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~~~~i~~~~~~~~d  105 (223)
                      .++++||-. ++.|..+..+++..  +.+|++++.+++..+.+++.+    |  .+.+- .... +..+.  ....+.+|
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~-~~~~-d~~~~--~~~~~~~D  173 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWR-LVVS-DLADS--ELPDGSVD  173 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEE-EECS-CGGGC--CCCTTCEE
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEE-EEEC-chHhc--CCCCCcee
Confidence            788999998 77999999999975  569999999999888777332    4  22221 1111 11111  01123799


Q ss_pred             EEEcCCCh--HHHHHHHHhhccCcEEEEEcc
Q 043295          106 VYFDNVGG--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       106 ~vid~~g~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      +|+.....  ..+..+.+.|+++|.++.+..
T Consensus       174 ~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          174 RAVLDMLAPWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             EEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             EEEECCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            99875553  468889999999999988753

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.56  E-value=0.018  Score=44.50  Aligned_cols=97  Identities=15%  Similarity=0.105  Sum_probs=65.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCC------CeeeecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGF------DDAFNYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      .++.+||+. +|.|..+..+++..+ .+|++++.++.-.+.+++.+..      +.-+..... +..+.+.. ..+.||+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~-D~~~~l~~-~~~~fD~  184 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCG-DGFEFLKN-HKNEFDV  184 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECS-CHHHHHHH-CTTCEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEC-hHHHHHHh-cCCCceE
Confidence            566899999 889999999998764 6999999999988888844421      111111222 44444443 3347999


Q ss_pred             EEcCCC-----------hHHHHHHHHhhccCcEEEEEc
Q 043295          107 YFDNVG-----------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       107 vid~~g-----------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+-...           .+.+..+.++|+++|.++.-.
T Consensus       185 Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          185 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            873321           235677888999999998754

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.55  E-value=0.024  Score=42.86  Aligned_cols=95  Identities=11%  Similarity=0.060  Sum_probs=65.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||-. +|.|..+..+++..|++|++++.++...+.+++.+   |...-+..... ++    .+.. +.+|+|+..
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~----~~~~-~~fD~v~~~  136 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-GW----EQFD-EPVDRIVSI  136 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-CG----GGCC-CCCSEEEEE
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC-Ch----hhCC-CCeeEEEEe
Confidence            678899988 78899999999888999999999999888887332   32111111111 22    1121 469988753


Q ss_pred             -----CC----hHHHHHHHHhhccCcEEEEEccc
Q 043295          111 -----VG----GEMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       111 -----~g----~~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                           .+    ...+..+.++|+|||.++.....
T Consensus       137 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  170 (287)
T 1kpg_A          137 GAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  170 (287)
T ss_dssp             SCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             CchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence                 32    13577888999999999876543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.54  E-value=0.013  Score=43.80  Aligned_cols=95  Identities=14%  Similarity=0.049  Sum_probs=62.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC--------------------CeeeecCCcccHH
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF--------------------DDAFNYKEETDLK   93 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~--------------------~~~~~~~~~~~~~   93 (223)
                      .++.+||.. .|.|..+..+++. |++|++++.|+.-++.+++..+.                    ..+ ..... ++.
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~-D~~  143 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSI-SLYCC-SIF  143 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE-EEEES-CTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCce-EEEEC-ccc
Confidence            478899999 7889999888876 99999999999998888744432                    111 11111 111


Q ss_pred             HHHHHhCCCCccEEEcCCC-----h----HHHHHHHHhhccCcEEEEEc
Q 043295           94 ATLKRYFPDGIDVYFDNVG-----G----EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus        94 ~~i~~~~~~~~d~vid~~g-----~----~~~~~~~~~l~~~G~~v~~g  133 (223)
                      + +.....+.||+|++...     .    ..+..+.++|+|||+++.+.
T Consensus       144 ~-l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          144 D-LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             T-GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             c-CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            1 11111147999996421     1    25677889999999986544

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=96.53  E-value=0.013  Score=45.08  Aligned_cols=97  Identities=15%  Similarity=0.089  Sum_probs=65.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhC-------CCeeeecCCcccHHHHHHHhCCCCcc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLG-------FDDAFNYKEETDLKATLKRYFPDGID  105 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~~~~i~~~~~~~~d  105 (223)
                      .++.+||+. +|.|..+..+++..+ .+|++++.++.-.+.+++.+.       ...+ ..... +..+.+....++.||
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v-~~~~~-D~~~~~~~~~~~~fD  171 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRA-TVRVG-DGLAFVRQTPDNTYD  171 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-EEEES-CHHHHHHSSCTTCEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcE-EEEEC-cHHHHHHhccCCcee
Confidence            567899999 889999999998754 599999999988888874331       1111 11111 333333322234799


Q ss_pred             EEEcCCC-----------hHHHHHHHHhhccCcEEEEEc
Q 043295          106 VYFDNVG-----------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       106 ~vid~~g-----------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +|+-...           .+.+..+.++|+++|.++...
T Consensus       172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  210 (304)
T 3bwc_A          172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG  210 (304)
T ss_dssp             EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            9874321           245778889999999998864

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.53  E-value=0.0057  Score=46.22  Aligned_cols=76  Identities=14%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCccc---HHHHHHHhCCC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETD---LKATLKRYFPD  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~---~~~~i~~~~~~  102 (223)
                      -.+++++|+   +++|.+.++.....|++|+.+++++++.+.+.+++   +....   .|-.+.++   +.+.+.+.  +
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~--g  108 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI--A  108 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH--S
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh--C
Confidence            567899999   89999999988889999999999877655444232   33211   23333312   23333333  4


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus       109 ~iD~lvnnAg  118 (275)
T 4imr_A          109 PVDILVINAS  118 (275)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999887

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.53  E-value=0.038  Score=42.09  Aligned_cols=103  Identities=15%  Similarity=0.132  Sum_probs=62.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH--HHHHHHHH---hhCCCee---eecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN--EKVAILKE---KLGFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~--~~~~~~~~---~~g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      .++++||+   +++|.+.++.....|++|+.++++.  ++.+.+.+   +.|....   .|-.+.++..+.+.+...  +
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  127 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALG  127 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            57899999   8999999998889999999988762  23333221   3443222   233333122222222221  3


Q ss_pred             CccEEEcCCCh-H-----------HH---------------HHHHHhhccCcEEEEEcccccc
Q 043295          103 GIDVYFDNVGG-E-----------ML---------------EAAVANMNLFGRVAACGVISEC  138 (223)
Q Consensus       103 ~~d~vid~~g~-~-----------~~---------------~~~~~~l~~~G~~v~~g~~~~~  138 (223)
                      ++|+++++.|. .           .+               +.++..+.++|++|.++.....
T Consensus       128 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~  190 (294)
T 3r3s_A          128 GLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAY  190 (294)
T ss_dssp             CCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGT
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhc
Confidence            69999988762 0           11               1233456678999999876553

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.52  E-value=0.011  Score=43.70  Aligned_cols=78  Identities=18%  Similarity=0.203  Sum_probs=50.4

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CC--Cee--eec--CCcccHHHHHHHhCC-
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GF--DDA--FNY--KEETDLKATLKRYFP-  101 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~--~~~--~~~--~~~~~~~~~i~~~~~-  101 (223)
                      -++++++|+   |++|.+.++.....|++|+.+++++++.+.+.+++   +.  ..+  .|.  .+.++..+.+.+... 
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            357889999   89999999888889999999999988776654332   21  112  222  222122222222211 


Q ss_pred             -CCccEEEcCCC
Q 043295          102 -DGIDVYFDNVG  112 (223)
Q Consensus       102 -~~~d~vid~~g  112 (223)
                       +++|+++++.|
T Consensus        92 ~g~id~lv~nAg  103 (247)
T 3i1j_A           92 FGRLDGLLHNAS  103 (247)
T ss_dssp             HSCCSEEEECCC
T ss_pred             CCCCCEEEECCc
Confidence             26999999877

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.52  E-value=0.0062  Score=49.63  Aligned_cols=88  Identities=17%  Similarity=0.130  Sum_probs=65.0

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -.|++|.|.  |.+|..+++.++..|++|+++++++.+..... ..|+. +.      ++.+.+.     ..|+|+-+.+
T Consensus       255 l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-~~g~~-~~------~l~ell~-----~aDiVi~~~~  321 (479)
T 1v8b_A          255 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-MEGFN-VV------TLDEIVD-----KGDFFITCTG  321 (479)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-TTTCE-EC------CHHHHTT-----TCSEEEECCS
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-HcCCE-ec------CHHHHHh-----cCCEEEECCC
Confidence            578899999  99999999999999999999999887754444 55652 11      3333332     3899988875


Q ss_pred             hH-HH-HHHHHhhccCcEEEEEccc
Q 043295          113 GE-ML-EAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       113 ~~-~~-~~~~~~l~~~G~~v~~g~~  135 (223)
                      .. .+ ...+..|++++.++.+|..
T Consensus       322 t~~lI~~~~l~~MK~gailiNvgrg  346 (479)
T 1v8b_A          322 NVDVIKLEHLLKMKNNAVVGNIGHF  346 (479)
T ss_dssp             SSSSBCHHHHTTCCTTCEEEECSST
T ss_pred             hhhhcCHHHHhhcCCCcEEEEeCCC
Confidence            43 22 3677889999999988854

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.51  E-value=0.0098  Score=43.81  Aligned_cols=72  Identities=19%  Similarity=0.268  Sum_probs=48.6

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCC--CCccEEEcC
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFP--DGIDVYFDN  110 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~--~~~d~vid~  110 (223)
                      +++++|+   |++|.+.++.....|++|+.+++++++  ..+ ++|...+ .|-.+. +..+.+.+...  +++|+++++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~--~~~-~~~~~~~~~D~~~~-~~~~~~~~~~~~~g~id~lv~~   77 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE--AAQ-SLGAVPLPTDLEKD-DPKGLVKRALEALGGLHVLVHA   77 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH--HHH-HHTCEEEECCTTTS-CHHHHHHHHHHHHTSCCEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH--HHH-hhCcEEEecCCchH-HHHHHHHHHHHHcCCCCEEEEC
Confidence            5789999   899999999888899999999988766  233 5563221 233332 44433333221  369999998


Q ss_pred             CC
Q 043295          111 VG  112 (223)
Q Consensus       111 ~g  112 (223)
                      .|
T Consensus        78 Ag   79 (239)
T 2ekp_A           78 AA   79 (239)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.51  E-value=0.042  Score=44.61  Aligned_cols=97  Identities=23%  Similarity=0.194  Sum_probs=65.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      ++|++||=. .+.|..++++|...+  .+|++++.++.+.+.+++   .+|...+.-...  +..+ +....++.||.|+
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~--Da~~-l~~~~~~~FD~Il  180 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNH--APAE-LVPHFSGFFDRIV  180 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECC--CHHH-HHHHHTTCEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeC--CHHH-hhhhccccCCEEE
Confidence            788888777 788999999998764  499999999998877763   357654422222  2222 2222234799886


Q ss_pred             c---CCCh--------------------------HHHHHHHHhhccCcEEEEEcc
Q 043295          109 D---NVGG--------------------------EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 d---~~g~--------------------------~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      -   |+|.                          ..+..++++|++||+++....
T Consensus       181 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  235 (456)
T 3m4x_A          181 VDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC  235 (456)
T ss_dssp             EECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             ECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            3   4442                          236677889999999987554

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.50  E-value=0.0091  Score=45.89  Aligned_cols=96  Identities=18%  Similarity=0.166  Sum_probs=64.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhC-------CCeeeecCCcccHHHHHHHhCCCCcc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLG-------FDDAFNYKEETDLKATLKRYFPDGID  105 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~~~~i~~~~~~~~d  105 (223)
                      .++.+||+. ++.|..+..+++..+ .+|++++.+++-.+.+++.+.       ...+ ..... +..+.+.. .++.||
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv-~v~~~-Da~~~l~~-~~~~fD  170 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL-TLHVG-DGFEFMKQ-NQDAFD  170 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-EEEES-CHHHHHHT-CSSCEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcE-EEEEC-cHHHHHhh-CCCCce
Confidence            567899999 889999999998764 599999999988888874321       1111 11111 33333332 234799


Q ss_pred             EEE-cCCC----------hHHHHHHHHhhccCcEEEEEc
Q 043295          106 VYF-DNVG----------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       106 ~vi-d~~g----------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +|+ |...          .+.+..+.++|+++|.++.-.
T Consensus       171 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          171 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            987 4332          135778889999999998754

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.50  E-value=0.0089  Score=46.58  Aligned_cols=85  Identities=16%  Similarity=0.152  Sum_probs=62.1

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .|++|.|.  |.+|...++.++..|.+|++.+++..+ +... ++|+...       ++.+.+.     ..|+|+.++..
T Consensus       164 ~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-~~g~~~~-------~l~ell~-----~aDvV~l~~P~  229 (335)
T 2g76_A          164 NGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSA-SFGVQQL-------PLEEIWP-----LCDFITVHTPL  229 (335)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHH-HTTCEEC-------CHHHHGG-----GCSEEEECCCC
T ss_pred             CcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhh-hcCceeC-------CHHHHHh-----cCCEEEEecCC
Confidence            46789999  999999999999999999999987665 4455 6776321       2333332     37899887763


Q ss_pred             -H----HH-HHHHHhhccCcEEEEEcc
Q 043295          114 -E----ML-EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       114 -~----~~-~~~~~~l~~~G~~v~~g~  134 (223)
                       +    .+ ...+..|++++.++.++.
T Consensus       230 t~~t~~li~~~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          230 LPSTTGLLNDNTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             CTTTTTSBCHHHHTTSCTTEEEEECSC
T ss_pred             CHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence             2    12 457788999999998875

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.50  E-value=0.0086  Score=45.28  Aligned_cols=78  Identities=14%  Similarity=0.228  Sum_probs=50.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEec-------------CHHHHHHHHHh---hCCCee---eecCCcccH
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-------------TNEKVAILKEK---LGFDDA---FNYKEETDL   92 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-------------~~~~~~~~~~~---~g~~~~---~~~~~~~~~   92 (223)
                      -.++++||+   +++|.+.++.....|++|+.+++             ++++.+.+.+.   .|....   .|-.+.++.
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            467899999   89999999988899999999987             55555544322   233221   244443123


Q ss_pred             HHHHHHhCC--CCccEEEcCCC
Q 043295           93 KATLKRYFP--DGIDVYFDNVG  112 (223)
Q Consensus        93 ~~~i~~~~~--~~~d~vid~~g  112 (223)
                      .+.+.+...  +++|+++++.|
T Consensus        93 ~~~~~~~~~~~g~id~lvnnAg  114 (280)
T 3pgx_A           93 RELVADGMEQFGRLDVVVANAG  114 (280)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            332332221  36999999887

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.50  E-value=0.013  Score=45.61  Aligned_cols=96  Identities=19%  Similarity=0.158  Sum_probs=65.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhh-----CC--CeeeecCCcccHHHHHHHhCCCCcc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKL-----GF--DDAFNYKEETDLKATLKRYFPDGID  105 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~-----g~--~~~~~~~~~~~~~~~i~~~~~~~~d  105 (223)
                      .++.+||.. +|.|..+..+++..+ .+|++++.++.-.+.+++.+     |.  ..+ ..... +..+.+.....+.||
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv-~~~~~-D~~~~l~~~~~~~fD  196 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRV-NLVIG-DGVAFLKNAAEGSYD  196 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTE-EEEES-CHHHHHHTSCTTCEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcE-EEEEC-CHHHHHHhccCCCcc
Confidence            567899999 889999999998764 59999999999888887433     11  111 11112 444444433334799


Q ss_pred             EEEc-CC---C-------hHHHHHHHHhhccCcEEEEE
Q 043295          106 VYFD-NV---G-------GEMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       106 ~vid-~~---g-------~~~~~~~~~~l~~~G~~v~~  132 (223)
                      +|+- ..   +       ...+..+.++|+++|.++.-
T Consensus       197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            8873 32   1       24577888999999999875

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.49  E-value=0.0064  Score=45.17  Aligned_cols=77  Identities=18%  Similarity=0.283  Sum_probs=49.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC-HHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT-NEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~-~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .+++++|+   |++|...++.....|++|+.++++ +++.+.+.+++   +... .  .|..+.+++.+.+.+...  ++
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGG   85 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999   899999998888899999999988 66555443232   3311 1  233333123333332221  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|++|++.|
T Consensus        86 id~vi~~Ag   94 (258)
T 3afn_B           86 IDVLINNAG   94 (258)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.49  E-value=0.022  Score=42.55  Aligned_cols=77  Identities=14%  Similarity=0.247  Sum_probs=48.8

Q ss_pred             CCCEEEEE--C---chHHHHHHHHHHcCCeEEEEecCH---HHHHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS--G---AYGHLVGQYAKLGGCYVVGSAGTN---EKVAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~--g---~vG~~a~qla~~~g~~v~~~~~~~---~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .++++||+  +   ++|.+.++.....|++|+.+++++   +..+.+.+..+....  .|-.+.++..+.+.+...  ++
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   87 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   87 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46788998  3   699999988888899999999876   333444323343222  244443233333333332  27


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        88 iD~lv~~Ag   96 (265)
T 1qsg_A           88 FDGFVHSIG   96 (265)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.49  E-value=0.0012  Score=48.61  Aligned_cols=96  Identities=19%  Similarity=0.171  Sum_probs=58.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee--eecCCccc---HHHHHHHhCC-CCccE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA--FNYKEETD---LKATLKRYFP-DGIDV  106 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~---~~~~i~~~~~-~~~d~  106 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+      +....  .|-.+.++   +.+.+.+..+ +++|+
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~   75 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDG   75 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc------cccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCE
Confidence            35788999   89999999988889999999998765421      10011  12222111   2223333332 47999


Q ss_pred             EEcCCCh--------H----H---------------HHHHHHhhccCcEEEEEccccc
Q 043295          107 YFDNVGG--------E----M---------------LEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       107 vid~~g~--------~----~---------------~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      ++++.|.        +    .               .+.+...+..+|+++.++....
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  133 (236)
T 1ooe_A           76 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAA  133 (236)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             EEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhh
Confidence            9998871        1    1               1223344555789998887554

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.49  E-value=0.011  Score=44.75  Aligned_cols=76  Identities=22%  Similarity=0.208  Sum_probs=49.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCee----eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDA----FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~----~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -++++++|+   |++|.+.++.+...|++|+++++++++.+.+.++   .|...+    .|-.+.+...+.+.+...  +
T Consensus        26 ~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  105 (286)
T 1xu9_A           26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG  105 (286)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            357889999   8999999988888999999999998877655422   343222    233332122222222211  3


Q ss_pred             CccEEEcC
Q 043295          103 GIDVYFDN  110 (223)
Q Consensus       103 ~~d~vid~  110 (223)
                      ++|+++++
T Consensus       106 ~iD~li~n  113 (286)
T 1xu9_A          106 GLDMLILN  113 (286)
T ss_dssp             SCSEEEEC
T ss_pred             CCCEEEEC
Confidence            69999987

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.48  E-value=0.011  Score=44.40  Aligned_cols=78  Identities=17%  Similarity=0.265  Sum_probs=49.9

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEec-CHHHHHHHHHh---hCCCee---eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-TNEKVAILKEK---LGFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -+++++||+   |++|...++.....|++|+++++ ++++.+.+.++   .+....   .|-.+.+.+.+.+.+...  +
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   98 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   98 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            456789999   89999999888889999999998 66665444322   343221   243433123333332221  2


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        99 ~~d~vi~~Ag  108 (274)
T 1ja9_A           99 GLDFVMSNSG  108 (274)
T ss_dssp             CEEEEECCCC
T ss_pred             CCCEEEECCC
Confidence            6999999886

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.47  E-value=0.0039  Score=46.75  Aligned_cols=102  Identities=12%  Similarity=0.137  Sum_probs=63.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH--hhCCCee---eecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE--KLGFDDA---FNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~--~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      +|+.+||+   +++|.+.++.....|++|+.+++++++.+.+.+  +.+....   .|-.+.++..+.+.+...  |++|
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD   85 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRLD   85 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            57899999   899999999888999999999987665433321  3443221   344443223333333222  3699


Q ss_pred             EEEcCCCh----------HHHH---------------HHHHhhc-cCcEEEEEccccc
Q 043295          106 VYFDNVGG----------EMLE---------------AAVANMN-LFGRVAACGVISE  137 (223)
Q Consensus       106 ~vid~~g~----------~~~~---------------~~~~~l~-~~G~~v~~g~~~~  137 (223)
                      +++++.|-          +.++               .++..|+ .+|++|.++...+
T Consensus        86 iLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~  143 (258)
T 4gkb_A           86 GLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTA  143 (258)
T ss_dssp             EEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHH
T ss_pred             EEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhh
Confidence            99998872          1121               2334453 4699999887654

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.47  E-value=0.009  Score=44.55  Aligned_cols=76  Identities=12%  Similarity=0.217  Sum_probs=48.4

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH--HHHHHHhh---CCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK--VAILKEKL---GFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~--~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      +++++|+   |++|.+.++.....|++|+.+++++++  .+.+.+++   +....   .|-.+.+++.+.+.+...  ++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG   81 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5788999   899999998888889999999988766  44433233   32211   243333122222322211  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        82 iD~lv~nAg   90 (258)
T 3a28_C           82 FDVLVNNAG   90 (258)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.46  E-value=0.014  Score=44.58  Aligned_cols=77  Identities=18%  Similarity=0.222  Sum_probs=50.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh--------CCCe-e--eecCCcccHHHHHHHhCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL--------GFDD-A--FNYKEETDLKATLKRYFP  101 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~--------g~~~-~--~~~~~~~~~~~~i~~~~~  101 (223)
                      .+++++|+   |++|.+.++.....|++|+.++++.++.+.+.+++        +... .  .|-.+.+.+...+.+...
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   96 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   96 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHH
Confidence            46889999   89999999888889999999999987765544232        2211 1  233333122222322211


Q ss_pred             --CCccEEEcCCC
Q 043295          102 --DGIDVYFDNVG  112 (223)
Q Consensus       102 --~~~d~vid~~g  112 (223)
                        +++|++|++.|
T Consensus        97 ~~g~id~li~~Ag  109 (303)
T 1yxm_A           97 TFGKINFLVNNGG  109 (303)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence              26999999887

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.46  E-value=0.011  Score=44.13  Aligned_cols=40  Identities=13%  Similarity=0.057  Sum_probs=34.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHH
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK   75 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~   75 (223)
                      .+++++|+   |++|...++.....|++|+.+++++++.+.+.
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   48 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETV   48 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            46789999   89999999888888999999999988776654

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.45  E-value=0.01  Score=44.15  Aligned_cols=77  Identities=18%  Similarity=0.240  Sum_probs=49.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEec-CHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-TNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      +++++||+   |++|.+.++.....|++|+.+++ ++++.+.+.+++   +... .  .|..+.+++.+.+.+...  ++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999   89999999888888999999998 766655443232   3321 1  233333123332332211  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|++|++.|
T Consensus        86 id~li~~Ag   94 (261)
T 1gee_A           86 LDVMINNAG   94 (261)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999876

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.44  E-value=0.013  Score=44.33  Aligned_cols=77  Identities=10%  Similarity=0.307  Sum_probs=49.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCcccHHHHHHHhC--CCCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETDLKATLKRYF--PDGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~--~~~~  104 (223)
                      .+++++|+   |++|...++.....|++|+++.+++++.+.+.+++   +....   .|-.+.+.+.+.+.+..  .+++
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i  122 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV  122 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            36789999   89999999888888999999888877665544233   43211   24333312333332221  1369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |++|.+.|
T Consensus       123 d~li~~Ag  130 (285)
T 2c07_A          123 DILVNNAG  130 (285)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999886

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.42  E-value=0.012  Score=43.55  Aligned_cols=74  Identities=15%  Similarity=0.224  Sum_probs=49.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe--eeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD--AFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .+++++|+   |++|.+.++.....|++|+.+++++++.+.+. +++-..  ..|-.+. +..+.+.+.. +++|+++++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~~~-~~~~~~~~~~-~~id~lv~~   81 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KYPGIQTRVLDVTKK-KQIDQFANEV-ERLDVLFNV   81 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GSTTEEEEECCTTCH-HHHHHHHHHC-SCCSEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hccCceEEEeeCCCH-HHHHHHHHHh-CCCCEEEEC
Confidence            46789999   89999999888889999999999887765544 332111  1243433 2222333322 369999998


Q ss_pred             CC
Q 043295          111 VG  112 (223)
Q Consensus       111 ~g  112 (223)
                      .|
T Consensus        82 Ag   83 (246)
T 2ag5_A           82 AG   83 (246)
T ss_dssp             CC
T ss_pred             Cc
Confidence            87

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.42  E-value=0.019  Score=43.54  Aligned_cols=96  Identities=17%  Similarity=0.122  Sum_probs=65.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCC-------CeeeecCCcccHHHHHHHhCCCCcc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGF-------DDAFNYKEETDLKATLKRYFPDGID  105 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~~~~i~~~~~~~~d  105 (223)
                      .++.+||+. +|.|..+..+++.. +.+|++++.++.-.+.+++.+..       ..+ ..... +..+.+... ++.+|
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v-~~~~~-D~~~~l~~~-~~~fD  153 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRV-NVFIE-DASKFLENV-TNTYD  153 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTE-EEEES-CHHHHHHHC-CSCEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcE-EEEEC-ChHHHHHhC-CCCce
Confidence            567899999 88999999998876 45999999999988888844431       111 11111 344434332 44799


Q ss_pred             EEEc-CC---C-------hHHHHHHHHhhccCcEEEEEc
Q 043295          106 VYFD-NV---G-------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       106 ~vid-~~---g-------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +|+- ..   +       .+.+..+.++|+++|.++...
T Consensus       154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            8874 22   1       245778889999999998764

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.41  E-value=0.0065  Score=47.31  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=65.5

Q ss_pred             HHHHHh-hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHhhC--------------CCeeeecCCcc
Q 043295           29 GFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEKLG--------------FDDAFNYKEET   90 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~~g--------------~~~~~~~~~~~   90 (223)
                      .+.... .++++||-. .+.|..+..+++..|  .+|++++.++...+.+++.+.              ...+ ..... 
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v-~~~~~-  174 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV-DFIHK-  174 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE-EEEES-
T ss_pred             HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCce-EEEEC-
Confidence            343444 889999988 777999999999876  699999999988877773221              1111 11111 


Q ss_pred             cHHHHHHHhCCCCccEEEcCCCh--HHHHHHHHhhccCcEEEEEcc
Q 043295           91 DLKATLKRYFPDGIDVYFDNVGG--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus        91 ~~~~~i~~~~~~~~d~vid~~g~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      +..+.......+.+|+|+-....  ..+..+.++|+++|+++....
T Consensus       175 d~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          175 DISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             CTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             ChHHcccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            11110111112359988855443  357889999999999997653

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.41  E-value=0.018  Score=42.84  Aligned_cols=77  Identities=17%  Similarity=0.270  Sum_probs=48.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHH---cCCeEEEEecCHHHHHHHHHhh-----CCCe-e--eecCCcccHHHHHHHhC-
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKL---GGCYVVGSAGTNEKVAILKEKL-----GFDD-A--FNYKEETDLKATLKRYF-  100 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~---~g~~v~~~~~~~~~~~~~~~~~-----g~~~-~--~~~~~~~~~~~~i~~~~-  100 (223)
                      .++++||+   |++|.+.++....   .|++|+.+++++++.+.+.+++     +... .  .|-.+.++..+.+.+.. 
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            35678888   8999988877776   8999999999988766554343     3211 1  34444323333333332 


Q ss_pred             ---CCCcc--EEEcCCC
Q 043295          101 ---PDGID--VYFDNVG  112 (223)
Q Consensus       101 ---~~~~d--~vid~~g  112 (223)
                         .+++|  +++++.|
T Consensus        85 ~~~~g~~d~~~lvnnAg  101 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             SCCCTTCCEEEEEECCC
T ss_pred             ccccccCCccEEEECCc
Confidence               23577  9988765

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.41  E-value=0.011  Score=43.91  Aligned_cols=94  Identities=16%  Similarity=0.140  Sum_probs=64.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCC-eeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFD-DAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .++.+||-. +|.|..+..+++..|.+|++++.++...+.+++.   .|.. .+ ..... +..+ +  ...+.||+|+.
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v-~~~~~-d~~~-~--~~~~~fD~V~~  109 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERV-HFIHN-DAAG-Y--VANEKCDVAAC  109 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTE-EEEES-CCTT-C--CCSSCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcce-EEEEC-ChHh-C--CcCCCCCEEEE
Confidence            788999988 7889999999998899999999999887777632   3432 12 11111 1111 0  01236999984


Q ss_pred             CC-----C--hHHHHHHHHhhccCcEEEEEc
Q 043295          110 NV-----G--GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       110 ~~-----g--~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      .-     .  ...+..+.++|+|||+++...
T Consensus       110 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          110 VGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             ESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            21     1  135778888999999998764

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.41  E-value=0.0069  Score=47.47  Aligned_cols=77  Identities=21%  Similarity=0.365  Sum_probs=50.1

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH-----------HHHHHHhhCCCee---eecCCcccHHHHHH
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK-----------VAILKEKLGFDDA---FNYKEETDLKATLK   97 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~-----------~~~~~~~~g~~~~---~~~~~~~~~~~~i~   97 (223)
                      -.++++||+   +++|.+.++.....|++|+.++++.++           .+.++ ..|....   .|-.+.++..+.+.
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~-~~g~~~~~~~~Dv~d~~~v~~~~~  121 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIE-AVGGKALPCIVDVRDEQQISAAVE  121 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHH-HTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHH-hcCCeEEEEEccCCCHHHHHHHHH
Confidence            357899999   899999998888899999999988653           22333 3444221   34444322333333


Q ss_pred             HhCC--CCccEEEcCCC
Q 043295           98 RYFP--DGIDVYFDNVG  112 (223)
Q Consensus        98 ~~~~--~~~d~vid~~g  112 (223)
                      +...  +++|+++++.|
T Consensus       122 ~~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          122 KAIKKFGGIDILVNNAS  138 (346)
T ss_dssp             HHHHHHSCCCEEEECCC
T ss_pred             HHHHHcCCCCEEEECCC
Confidence            3222  36999999887

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.41  E-value=0.014  Score=43.98  Aligned_cols=95  Identities=6%  Similarity=-0.017  Sum_probs=66.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHhh----CCCeeeecCCcccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEKL----GFDDAFNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      .++++||-. ++.|..+..+++..  +.+|++++.++...+.+++.+    |.+.+- .... +..+   ...++.+|+|
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~-~~~~-d~~~---~~~~~~fD~V  183 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVR-TSRS-DIAD---FISDQMYDAV  183 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEE-EECS-CTTT---CCCSCCEEEE
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEE-EEEC-chhc---cCcCCCccEE
Confidence            788899888 78899999999974  679999999999888877433    533321 1111 2211   1112369999


Q ss_pred             EcCCCh--HHHHHHHHhhccCcEEEEEcc
Q 043295          108 FDNVGG--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       108 id~~g~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      +-....  ..+..+.+.|+++|.++....
T Consensus       184 i~~~~~~~~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          184 IADIPDPWNHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             EECCSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             EEcCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            875553  468889999999999988753

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.40  E-value=0.02  Score=43.28  Aligned_cols=78  Identities=9%  Similarity=0.189  Sum_probs=49.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEec-CHHHHHHHHHhh----CCCee---eecCCcccHHHHHHHhCC--
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-TNEKVAILKEKL----GFDDA---FNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-~~~~~~~~~~~~----g~~~~---~~~~~~~~~~~~i~~~~~--  101 (223)
                      -.++++||+   |++|.+.++.....|++|+.+++ +.++.+.+.+++    +....   .|-.+.++..+.+.+...  
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            456889999   89999999988899999999998 555554443232    22111   233333122222222211  


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|+++++.|
T Consensus       103 g~iD~lv~nAg  113 (281)
T 3v2h_A          103 GGADILVNNAG  113 (281)
T ss_dssp             SSCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36999999887

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.40  E-value=0.011  Score=44.87  Aligned_cols=78  Identities=17%  Similarity=0.183  Sum_probs=49.4

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC----------------HHHHHHHHHh---hCCCee---eecCCc
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT----------------NEKVAILKEK---LGFDDA---FNYKEE   89 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~----------------~~~~~~~~~~---~g~~~~---~~~~~~   89 (223)
                      -.++++||+   +++|.+.++.....|++|+.++++                .++.+.+.++   .+....   .|-.+.
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   88 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY   88 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence            357899999   899999999888999999999876                5555444322   233211   244443


Q ss_pred             ccHHHHHHHhCC--CCccEEEcCCC
Q 043295           90 TDLKATLKRYFP--DGIDVYFDNVG  112 (223)
Q Consensus        90 ~~~~~~i~~~~~--~~~d~vid~~g  112 (223)
                      ++..+.+.+...  +++|+++++.|
T Consensus        89 ~~v~~~~~~~~~~~g~id~lv~nAg  113 (286)
T 3uve_A           89 DALKAAVDSGVEQLGRLDIIVANAG  113 (286)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCc
Confidence            123322332221  36999999887

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.39  E-value=0.0084  Score=44.80  Aligned_cols=77  Identities=16%  Similarity=0.218  Sum_probs=49.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEE-ecCHHHHHHHHHhh---CCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGS-AGTNEKVAILKEKL---GFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~-~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      +++++||+   |++|.+.++.....|++|+.+ .++.++.+.+.+++   |....   .|-.+.++..+.+.+...  ++
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGR   82 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57889999   899999999988999999987 77777665554333   33221   233333122222322221  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        83 id~lv~nAg   91 (258)
T 3oid_A           83 LDVFVNNAA   91 (258)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999886

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.39  E-value=0.014  Score=44.51  Aligned_cols=42  Identities=12%  Similarity=0.072  Sum_probs=34.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEe-cCHHHHHHHHHh
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSA-GTNEKVAILKEK   77 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~-~~~~~~~~~~~~   77 (223)
                      .++++||+   |++|.+.++.....|++|+.++ +++++.+.+.++
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~   53 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSAT   53 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH
Confidence            56788999   8999999998888999999999 998776655433

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.39  E-value=0.029  Score=40.39  Aligned_cols=89  Identities=18%  Similarity=0.131  Sum_probs=59.3

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcCCChH
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDNVGGE  114 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~  114 (223)
                      +|||+   |.+|..+++.+...|++|+++++++++.+.+.  .+...+ .|..+. +. +.   +  +++|+||.+.|..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~-~~-~~---~--~~~d~vi~~ag~~   72 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDINILQKDIFDL-TL-SD---L--SDQNVVVDAYGIS   72 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSEEEECCGGGC-CH-HH---H--TTCSEEEECCCSS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCeEEeccccCh-hh-hh---h--cCCCEEEECCcCC
Confidence            58888   88999999998889999999999987765442  233222 244333 22 22   2  2599999999741


Q ss_pred             ---------HHHHHHHhhcc--CcEEEEEcccc
Q 043295          115 ---------MLEAAVANMNL--FGRVAACGVIS  136 (223)
Q Consensus       115 ---------~~~~~~~~l~~--~G~~v~~g~~~  136 (223)
                               .....++.++.  .++++.++...
T Consensus        73 ~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~  105 (221)
T 3ew7_A           73 PDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAA  105 (221)
T ss_dssp             TTTTTSHHHHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred             ccccchHHHHHHHHHHHHHhcCCceEEEEecce
Confidence                     23455566654  37888877543

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.0075  Score=44.94  Aligned_cols=76  Identities=24%  Similarity=0.220  Sum_probs=49.1

Q ss_pred             CCEEEEE---CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccE
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDV  106 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~  106 (223)
                      ++++||+   +++|.+.++.....  |++|+.+++++++.+.+.++++....   .|-.+.++..+.+.+...  +++|+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   81 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS   81 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence            5788999   78998888665555  57999999999888777656654222   243433122222322221  36999


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ++++.|
T Consensus        82 lvnnAg   87 (254)
T 3kzv_A           82 LVANAG   87 (254)
T ss_dssp             EEEECC
T ss_pred             EEECCc
Confidence            998876

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.36  E-value=0.049  Score=43.68  Aligned_cols=93  Identities=16%  Similarity=0.259  Sum_probs=65.0

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChH
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGE  114 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~  114 (223)
                      +.+|+|.  |-+|..+++.++..|..|++++.++++.+.++ ..|...++  .+. .-.+.+++..-..+|+++-+++.+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~-~~g~~vi~--GDa-t~~~~L~~agi~~A~~viv~~~~~   79 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLR-KFGMKVFY--GDA-TRMDLLESAGAAKAEVLINAIDDP   79 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHH-HTTCCCEE--SCT-TCHHHHHHTTTTTCSEEEECCSSH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH-hCCCeEEE--cCC-CCHHHHHhcCCCccCEEEECCCCh
Confidence            4568888  99999999999999999999999999999998 78875443  221 112334443223799999999864


Q ss_pred             H----HHHHHHhhccCcEEEEEc
Q 043295          115 M----LEAAVANMNLFGRVAACG  133 (223)
Q Consensus       115 ~----~~~~~~~l~~~G~~v~~g  133 (223)
                      .    +....+.+.+..+++.-.
T Consensus        80 ~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           80 QTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCeEEEEE
Confidence            2    233445566676666543

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.35  E-value=0.012  Score=45.47  Aligned_cols=77  Identities=23%  Similarity=0.247  Sum_probs=49.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEe---------cCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSA---------GTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYF  100 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~---------~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~  100 (223)
                      .+++++|+   |++|...++.....|++|+.++         ++.++.+.+.++   .+...+.|..+..+....+.+..
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~~   87 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   87 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence            46788999   8999999988888999999864         345554433222   34334456555423333333221


Q ss_pred             --CCCccEEEcCCC
Q 043295          101 --PDGIDVYFDNVG  112 (223)
Q Consensus       101 --~~~~d~vid~~g  112 (223)
                        -+++|++|++.|
T Consensus        88 ~~~g~iD~lVnnAG  101 (319)
T 1gz6_A           88 DTFGRIDVVVNNAG  101 (319)
T ss_dssp             HHTSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence              136999999887

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.34  E-value=0.013  Score=43.21  Aligned_cols=76  Identities=18%  Similarity=0.199  Sum_probs=47.8

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEE-ecCHHHHHHHHHh---hCCCe----eeecCCcccHHHHHHHhCC--CC
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGS-AGTNEKVAILKEK---LGFDD----AFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~-~~~~~~~~~~~~~---~g~~~----~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      +++++|+   |++|...++.....|++|+++ ++++++.+.+.++   .+...    ..|-.+.+...+.+.+...  ++
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG   80 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence            3578888   899999998888899999998 7787766544322   23321    1243333122222222211  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|++|.+.|
T Consensus        81 ~d~li~~Ag   89 (245)
T 2ph3_A           81 LDTLVNNAG   89 (245)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999886

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.34  E-value=0.11  Score=35.14  Aligned_cols=94  Identities=11%  Similarity=0.057  Sum_probs=57.0

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecC-HHHHHHHHHhh--CCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGT-NEKVAILKEKL--GFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~-~~~~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      +.++++|.  |.+|...++.+...|.+|++++++ +++.+.+.+.+  |.. ++. .+. ...+.+.+..-+++|.|+-+
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~-~i~-gd~-~~~~~l~~a~i~~ad~vi~~   78 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNAD-VIP-GDS-NDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCE-EEE-SCT-TSHHHHHHHTTTTCSEEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCe-EEE-cCC-CCHHHHHHcChhhCCEEEEe
Confidence            34678888  899999998888899999999986 45555554233  332 222 221 11233444322369999999


Q ss_pred             CChHHHH----HHHHhhccCcEEEEE
Q 043295          111 VGGEMLE----AAVANMNLFGRVAAC  132 (223)
Q Consensus       111 ~g~~~~~----~~~~~l~~~G~~v~~  132 (223)
                      ++.+...    ...+.+.+..+++..
T Consensus        79 ~~~d~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           79 SDNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             SSCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             cCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            9865322    233344455566553

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=96.33  E-value=0.015  Score=43.04  Aligned_cols=98  Identities=12%  Similarity=0.019  Sum_probs=63.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhC----CCCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYF----PDGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~----~~~~  104 (223)
                      .++.+||-. ++.|..+..+|+..  +.+|++++.+++..+.+++   ..|...-+..... +..+.+....    .+.|
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g-da~~~l~~~~~~~~~~~f  137 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLG-PALDTLHSLLNEGGEHQF  137 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEES-CHHHHHHHHHHHHCSSCE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHhhccCCCCE
Confidence            678898888 88899999999976  5799999988765433331   4465321122222 3333333321    2479


Q ss_pred             cEEEcCCC-h---HHHHHHHHhhccCcEEEEEc
Q 043295          105 DVYFDNVG-G---EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       105 d~vid~~g-~---~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+|+-... .   ..+..+.++|++||.++.-.
T Consensus       138 D~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~  170 (242)
T 3r3h_A          138 DFIFIDADKTNYLNYYELALKLVTPKGLIAIDN  170 (242)
T ss_dssp             EEEEEESCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             eEEEEcCChHHhHHHHHHHHHhcCCCeEEEEEC
Confidence            98864333 2   25778899999999998743

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.33  E-value=0.02  Score=44.19  Aligned_cols=85  Identities=19%  Similarity=0.127  Sum_probs=62.3

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .|.+|.|.  |.+|...++.++..|++|++.++++++. ... ++|+...       ++.+.+.+     .|+|+-++..
T Consensus       141 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~-~~g~~~~-------~l~ell~~-----aDvVvl~~P~  206 (313)
T 2ekl_A          141 AGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAE-KINAKAV-------SLEELLKN-----SDVISLHVTV  206 (313)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHH-HTTCEEC-------CHHHHHHH-----CSEEEECCCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHH-hcCceec-------CHHHHHhh-----CCEEEEeccC
Confidence            46789999  9999999999999999999999887664 355 6776421       23333332     7899888763


Q ss_pred             -H----HH-HHHHHhhccCcEEEEEcc
Q 043295          114 -E----ML-EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       114 -~----~~-~~~~~~l~~~G~~v~~g~  134 (223)
                       +    .+ ...+..+++++.++.++.
T Consensus       207 ~~~t~~li~~~~l~~mk~ga~lIn~ar  233 (313)
T 2ekl_A          207 SKDAKPIIDYPQFELMKDNVIIVNTSR  233 (313)
T ss_dssp             CTTSCCSBCHHHHHHSCTTEEEEESSC
T ss_pred             ChHHHHhhCHHHHhcCCCCCEEEECCC
Confidence             2    12 456778899998888875

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.31  E-value=0.023  Score=43.98  Aligned_cols=97  Identities=19%  Similarity=0.166  Sum_probs=65.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCC------CeeeecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGF------DDAFNYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      .++.+||.. +|.|..+..+++.. +.+|++++.+++-.+.+++.+..      +.-+..... +..+.+.. .++.||+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~-D~~~~l~~-~~~~fDv  192 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE-DASKFLEN-VTNTYDV  192 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEES-CHHHHHHH-CCSCEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEc-cHHHHHhh-cCCCceE
Confidence            567899999 88999999999875 46999999999988888844332      101111112 34333332 2347999


Q ss_pred             EE-cCC---C-------hHHHHHHHHhhccCcEEEEEc
Q 043295          107 YF-DNV---G-------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       107 vi-d~~---g-------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+ |..   +       .+.+..+.+.|+++|.++.-.
T Consensus       193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          193 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             EEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            87 332   1       245778889999999998753

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.31  E-value=0.019  Score=43.41  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=48.9

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC------------HHHHHHHHH---hhCCCee---eecCCcccHH
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT------------NEKVAILKE---KLGFDDA---FNYKEETDLK   93 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~------------~~~~~~~~~---~~g~~~~---~~~~~~~~~~   93 (223)
                      -.++++||+   +++|.+.++.....|++|+.++++            .++.+...+   ..|....   .|-.+.++..
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~   87 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALE   87 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            357899999   899999999999999999999986            344333221   3343222   2433331222


Q ss_pred             HHHHHhCC--CCccEEEcCCC
Q 043295           94 ATLKRYFP--DGIDVYFDNVG  112 (223)
Q Consensus        94 ~~i~~~~~--~~~d~vid~~g  112 (223)
                      +.+.+...  +++|+++++.|
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg  108 (281)
T 3s55_A           88 SFVAEAEDTLGGIDIAITNAG  108 (281)
T ss_dssp             HHHHHHHHHHTCCCEEEECCC
T ss_pred             HHHHHHHHhcCCCCEEEECCC
Confidence            22322211  36999999887

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.29  E-value=0.009  Score=45.36  Aligned_cols=76  Identities=18%  Similarity=0.314  Sum_probs=48.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH-----------HHHHHHhhCCCee---eecCCcccHHHHHHH
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK-----------VAILKEKLGFDDA---FNYKEETDLKATLKR   98 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~-----------~~~~~~~~g~~~~---~~~~~~~~~~~~i~~   98 (223)
                      .++++||+   +++|.+.++.....|++|+.++++.++           .+.++ ..+....   .|-.+.++..+.+.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~   86 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIE-EAGGQALPIVGDIRDGDAVAAAVAK   86 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHH-HHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHH-hcCCcEEEEECCCCCHHHHHHHHHH
Confidence            57889999   899999998888889999999988652           22233 3444221   244443122222332


Q ss_pred             hCC--CCccEEEcCCC
Q 043295           99 YFP--DGIDVYFDNVG  112 (223)
Q Consensus        99 ~~~--~~~d~vid~~g  112 (223)
                      ...  +++|+++++.|
T Consensus        87 ~~~~~g~id~lvnnAg  102 (285)
T 3sc4_A           87 TVEQFGGIDICVNNAS  102 (285)
T ss_dssp             HHHHHSCCSEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence            221  26999999887

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.29  E-value=0.013  Score=44.29  Aligned_cols=79  Identities=18%  Similarity=0.155  Sum_probs=50.4

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEec-CHHHHHHHHHh---hCCCee---eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-TNEKVAILKEK---LGFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -.++++||+   |++|.+.++.....|++|+.+++ ++++.+.+.++   .|....   .|-.+.++..+.+.+...  +
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            457889999   89999999988899999999985 66555444323   233211   244443233333333222  2


Q ss_pred             CccEEEcCCCh
Q 043295          103 GIDVYFDNVGG  113 (223)
Q Consensus       103 ~~d~vid~~g~  113 (223)
                      ++|+++++.|.
T Consensus       107 ~iD~lvnnAg~  117 (280)
T 4da9_A          107 RIDCLVNNAGI  117 (280)
T ss_dssp             CCCEEEEECC-
T ss_pred             CCCEEEECCCc
Confidence            69999998874

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.29  E-value=0.016  Score=44.95  Aligned_cols=42  Identities=12%  Similarity=0.072  Sum_probs=35.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEe-cCHHHHHHHHHh
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSA-GTNEKVAILKEK   77 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~-~~~~~~~~~~~~   77 (223)
                      .++++||+   |++|.+.++.....|++|+.++ +++++.+.+.++
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~   90 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSAT   90 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence            56788999   8999999998888999999999 988876655433

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.28  E-value=0.016  Score=42.55  Aligned_cols=98  Identities=8%  Similarity=-0.101  Sum_probs=63.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC--CeeeecCCcccHHHHHHHhCCCCccEEEc-C
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF--DDAFNYKEETDLKATLKRYFPDGIDVYFD-N  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~i~~~~~~~~d~vid-~  110 (223)
                      .++.+||=. .|.|..+..+++....+|++++.++.-++.+++....  ..+ ..... +..+.......+.||+|+- +
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v-~~~~~-d~~~~~~~~~~~~fD~V~~d~  136 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKV-IPLKG-LWEDVAPTLPDGHFDGILYDT  136 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEE-EEEES-CHHHHGGGSCTTCEEEEEECC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCe-EEEec-CHHHhhcccCCCceEEEEECC
Confidence            678888888 7889988888664444999999999988888843211  122 11111 3333222233347999976 2


Q ss_pred             CC----h-------HHHHHHHHhhccCcEEEEEcc
Q 043295          111 VG----G-------EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       111 ~g----~-------~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .+    .       ..+..+.++|+|||+++.+..
T Consensus       137 ~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             cccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            21    1       126778899999999987643

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.28  E-value=0.0081  Score=44.71  Aligned_cols=74  Identities=14%  Similarity=0.039  Sum_probs=47.4

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH--hhCCCee-eecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE--KLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~--~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      +++||+   |++|.+.++.....|++|+.+++++++.+.+.+  ..|.... +|..+-..+.+.+.+.. +++|+++++.
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~v~~~~~~~~~~~-g~iD~lv~nA   80 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAY-GQVDVLVSND   80 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHH-SCCCEEEEEC
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEECHHHHHHHHHHHHHHh-CCCCEEEECC
Confidence            467888   899999999988999999999988776655431  2343222 22222112233333322 3699999987


Q ss_pred             C
Q 043295          112 G  112 (223)
Q Consensus       112 g  112 (223)
                      |
T Consensus        81 g   81 (254)
T 1zmt_A           81 I   81 (254)
T ss_dssp             C
T ss_pred             C
Confidence            6

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=96.27  E-value=0.023  Score=41.79  Aligned_cols=100  Identities=13%  Similarity=0.112  Sum_probs=65.6

Q ss_pred             HHHHh-hCCCEEEEE-CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHhhCC-Cee--eecCCcccHHHHHHHhCCC
Q 043295           30 FYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEKLGF-DDA--FNYKEETDLKATLKRYFPD  102 (223)
Q Consensus        30 l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~~g~-~~~--~~~~~~~~~~~~i~~~~~~  102 (223)
                      +..+. +||++||=. .+.|..+..+|+..|-  +|++++.+++..+.+++.... ..+  +..+.. .. +.. ....+
T Consensus        70 l~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~-~p-~~~-~~~~~  146 (233)
T 4df3_A           70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDAR-FP-EKY-RHLVE  146 (233)
T ss_dssp             CSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTT-CG-GGG-TTTCC
T ss_pred             hhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEecc-Cc-ccc-ccccc
Confidence            33344 999999999 8899999999999875  899999999988887733221 112  111111 10 000 01112


Q ss_pred             CccEEEcCCC-h----HHHHHHHHhhccCcEEEEE
Q 043295          103 GIDVYFDNVG-G----EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       103 ~~d~vid~~g-~----~~~~~~~~~l~~~G~~v~~  132 (223)
                      .+|+||.... .    ..+..+.+.|+|+|+++..
T Consensus       147 ~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          147 GVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             CEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            6898875443 1    2466778899999999875

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.26  E-value=0.011  Score=44.65  Aligned_cols=78  Identities=10%  Similarity=0.150  Sum_probs=49.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEec-------------CHHHHHHHHHh---hCCCee---eecCCcccH
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-------------TNEKVAILKEK---LGFDDA---FNYKEETDL   92 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-------------~~~~~~~~~~~---~g~~~~---~~~~~~~~~   92 (223)
                      -.++++||+   +++|.+.++.....|++|+.+++             +.++.+.+.+.   .+....   .|-.+.++.
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   88 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL   88 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            357899999   89999999988899999999987             45554443322   233221   233333123


Q ss_pred             HHHHHHhCC--CCccEEEcCCC
Q 043295           93 KATLKRYFP--DGIDVYFDNVG  112 (223)
Q Consensus        93 ~~~i~~~~~--~~~d~vid~~g  112 (223)
                      .+.+.+...  +++|+++++.|
T Consensus        89 ~~~~~~~~~~~g~id~lvnnAg  110 (277)
T 3tsc_A           89 RKVVDDGVAALGRLDIIVANAG  110 (277)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            333333222  36999999886

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.26  E-value=0.015  Score=44.45  Aligned_cols=91  Identities=14%  Similarity=0.038  Sum_probs=61.4

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCC--eeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFD--DAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      ++++++|.  |++|.+++..+...|+ +|+...++.++.+.+.++++..  .+.+      + +.+.+.. .++|+|++|
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~------~-~~~~~~~-~~aDivIn~  211 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS------L-AEAETRL-AEYDIIINT  211 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC------H-HHHHHTG-GGCSEEEEC
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee------H-HHHHhhh-ccCCEEEEC
Confidence            57899999  9999999999989998 9999999988876665466652  2221      1 1222221 259999999


Q ss_pred             CChHHH------HHHHHhhccCcEEEEEcc
Q 043295          111 VGGEML------EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       111 ~g~~~~------~~~~~~l~~~G~~v~~g~  134 (223)
                      ++....      ......++++..++.+..
T Consensus       212 t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y  241 (297)
T 2egg_A          212 TSVGMHPRVEVQPLSLERLRPGVIVSDIIY  241 (297)
T ss_dssp             SCTTCSSCCSCCSSCCTTCCTTCEEEECCC
T ss_pred             CCCCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence            985321      011235667777777765

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.25  E-value=0.0098  Score=44.77  Aligned_cols=78  Identities=14%  Similarity=0.185  Sum_probs=49.1

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEec-CHHHHHHHHH---hhCCCee---eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-TNEKVAILKE---KLGFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-~~~~~~~~~~---~~g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -.++++||+   |++|.+.++.....|++|+.+++ +.++.+.+.+   ..+....   .|-.+.++..+.+.+...  +
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g  105 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWG  105 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            467889999   89999999988889999999887 5555444332   2333221   244443122222322221  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus       106 ~id~lv~nAg  115 (269)
T 4dmm_A          106 RLDVLVNNAG  115 (269)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999886

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.25  E-value=0.024  Score=42.83  Aligned_cols=95  Identities=14%  Similarity=0.064  Sum_probs=65.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhh-----CC--Cee-eecCCcccHHHHHHHhCCCCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKL-----GF--DDA-FNYKEETDLKATLKRYFPDGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~-----g~--~~~-~~~~~~~~~~~~i~~~~~~~~  104 (223)
                      ..+.+||+. +|.|..+..+++..+ .+|+++..+++-.+.+++.+     +.  ..+ +-..   +..+.+.. .++.+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~---D~~~~l~~-~~~~f  149 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD---DGFMHIAK-SENQY  149 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES---CSHHHHHT-CCSCE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEEC---cHHHHHhh-CCCCe
Confidence            467899999 888999999998766 59999999999888887433     22  111 1111   22333333 23479


Q ss_pred             cEEEc-CCC----------hHHHHHHHHhhccCcEEEEEc
Q 043295          105 DVYFD-NVG----------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       105 d~vid-~~g----------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+|+- ...          .+.+..+.+.|+++|.++.-.
T Consensus       150 D~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          150 DVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             EEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            98874 321          246888999999999998763

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.24  E-value=0.014  Score=44.18  Aligned_cols=92  Identities=16%  Similarity=0.095  Sum_probs=63.0

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE--Cc-hHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS--GA-YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~-vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      .+||+..-+...+.+..  -.|++++|.  |. +|..+++++...|++|+...+..                    . ++
T Consensus       140 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------------~-~L  198 (285)
T 3l07_A          140 LESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------------T-DL  198 (285)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------------S-SH
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------------h-hH
Confidence            34554455555555555  688999999  55 89999999999999987654221                    1 33


Q ss_pred             HHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      .+.+++     .|+++.++|.+.+ -.-+.++++..++.+|...
T Consensus       199 ~~~~~~-----ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~~  236 (285)
T 3l07_A          199 KSHTTK-----ADILIVAVGKPNF-ITADMVKEGAVVIDVGINH  236 (285)
T ss_dssp             HHHHTT-----CSEEEECCCCTTC-BCGGGSCTTCEEEECCCEE
T ss_pred             HHhccc-----CCEEEECCCCCCC-CCHHHcCCCcEEEEecccC
Confidence            333332     8999999986533 2335678999999998654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.24  E-value=0.062  Score=40.70  Aligned_cols=84  Identities=18%  Similarity=0.143  Sum_probs=56.0

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh-H
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG-E  114 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~-~  114 (223)
                      .+|.|.  |.+|...++.....|.+|++.++++++.+.+. +.|....   .   +..+.+.+     .|+||-|+.. .
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~---~---~~~~~~~~-----aDvvi~~vp~~~   69 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELA-ALGAERA---A---TPCEVVES-----CPVTFAMLADPA   69 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH-HTTCEEC---S---SHHHHHHH-----CSEEEECCSSHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-HCCCeec---C---CHHHHHhc-----CCEEEEEcCCHH
Confidence            467788  99999999888889999999999999888887 6665221   1   23333332     6777777763 3


Q ss_pred             HHHHHH-------HhhccCcEEEEEc
Q 043295          115 MLEAAV-------ANMNLFGRVAACG  133 (223)
Q Consensus       115 ~~~~~~-------~~l~~~G~~v~~g  133 (223)
                      .....+       ..++++..++..+
T Consensus        70 ~~~~v~~~~~~l~~~l~~~~~vi~~s   95 (287)
T 3pef_A           70 AAEEVCFGKHGVLEGIGEGRGYVDMS   95 (287)
T ss_dssp             HHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             HHHHHHcCcchHhhcCCCCCEEEeCC
Confidence            333333       3455555565554

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.24  E-value=0.049  Score=41.31  Aligned_cols=73  Identities=19%  Similarity=0.187  Sum_probs=50.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CCC-eeeecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GFD-DAFNYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~~-~~~~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      -++++++|.   |++|.+++..+...|++|+.+.++.++.+.+.+++    +.. ...|..+.    +.+.+... .+|+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~----~~~~~~~~-~~Dv  191 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADD----ASRAEAVK-GAHF  191 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSH----HHHHHHTT-TCSE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCH----HHHHHHHH-hCCE
Confidence            367899999   89999999988889999999999987766554333    322 12343332    22333322 3899


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      +++++|
T Consensus       192 lVn~ag  197 (287)
T 1lu9_A          192 VFTAGA  197 (287)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999997

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.24  E-value=0.015  Score=42.74  Aligned_cols=76  Identities=13%  Similarity=0.144  Sum_probs=49.1

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCC-------eEEEEecCHHHHHHHHHhh---CCCe-e--eecCCcccHHHHHHHhC
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGC-------YVVGSAGTNEKVAILKEKL---GFDD-A--FNYKEETDLKATLKRYF  100 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~-------~v~~~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~  100 (223)
                      ++++||+   |++|...++.....|+       +|+.+++++++.+.+.+++   +... .  .|-.+.+.+...+.+..
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            5678999   8999999888888899       9999999988776554333   3211 1  23333312222222221


Q ss_pred             --CCCccEEEcCCC
Q 043295          101 --PDGIDVYFDNVG  112 (223)
Q Consensus       101 --~~~~d~vid~~g  112 (223)
                        .+++|+++++.|
T Consensus        82 ~~~g~id~li~~Ag   95 (244)
T 2bd0_A           82 ERYGHIDCLVNNAG   95 (244)
T ss_dssp             HHTSCCSEEEECCC
T ss_pred             HhCCCCCEEEEcCC
Confidence              136999999886

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.23  E-value=0.0072  Score=45.91  Aligned_cols=78  Identities=15%  Similarity=0.180  Sum_probs=49.1

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH-HHHHHHHHhh----CCCe---eeecCC----cccHHHHHHHh
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN-EKVAILKEKL----GFDD---AFNYKE----ETDLKATLKRY   99 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~-~~~~~~~~~~----g~~~---~~~~~~----~~~~~~~i~~~   99 (223)
                      -.++++||+   |++|.+.++.....|++|+.++++. ++.+.+.+++    +...   ..|-.+    .++....+.+.
T Consensus        21 l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~  100 (288)
T 2x9g_A           21 MEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC  100 (288)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence            356789999   8999999988888899999999887 6655443233    3211   123333    21222222222


Q ss_pred             CC--CCccEEEcCCC
Q 043295          100 FP--DGIDVYFDNVG  112 (223)
Q Consensus       100 ~~--~~~d~vid~~g  112 (223)
                      ..  +++|++|++.|
T Consensus       101 ~~~~g~iD~lvnnAG  115 (288)
T 2x9g_A          101 FRAFGRCDVLVNNAS  115 (288)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHhcCCCCEEEECCC
Confidence            11  36999999887

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.23  E-value=0.019  Score=43.21  Aligned_cols=78  Identities=17%  Similarity=0.255  Sum_probs=49.6

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC------------HHHHHHHHH---hhCCCee---eecCCcccHH
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT------------NEKVAILKE---KLGFDDA---FNYKEETDLK   93 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~------------~~~~~~~~~---~~g~~~~---~~~~~~~~~~   93 (223)
                      -.++++||+   +++|.+.++.....|++|+.++++            .++.+.+.+   ..+....   .|-.+.++..
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   90 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS   90 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            357899999   899999998888899999999876            444443321   3343222   2333331233


Q ss_pred             HHHHHhCC--CCccEEEcCCC
Q 043295           94 ATLKRYFP--DGIDVYFDNVG  112 (223)
Q Consensus        94 ~~i~~~~~--~~~d~vid~~g  112 (223)
                      +.+.+...  +++|+++++.|
T Consensus        91 ~~~~~~~~~~g~id~lv~nAg  111 (278)
T 3sx2_A           91 AALQAGLDELGRLDIVVANAG  111 (278)
T ss_dssp             HHHHHHHHHHCCCCEEEECCC
T ss_pred             HHHHHHHHHcCCCCEEEECCC
Confidence            33332221  36999999887

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.22  E-value=0.019  Score=43.83  Aligned_cols=78  Identities=13%  Similarity=0.179  Sum_probs=49.1

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC------------HHHHHHHHH---hhCCCee---eecCCcccHH
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT------------NEKVAILKE---KLGFDDA---FNYKEETDLK   93 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~------------~~~~~~~~~---~~g~~~~---~~~~~~~~~~   93 (223)
                      -.++++||+   +++|.+.++.....|++|+.++++            .++.+.+.+   ..|....   .|-.+.++..
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~  105 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ  105 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence            357899999   899999999888999999999876            444443321   3343222   3444331222


Q ss_pred             HHHHHhCC--CCccEEEcCCC
Q 043295           94 ATLKRYFP--DGIDVYFDNVG  112 (223)
Q Consensus        94 ~~i~~~~~--~~~d~vid~~g  112 (223)
                      +.+.+...  +++|+++++.|
T Consensus       106 ~~~~~~~~~~g~iD~lv~nAg  126 (299)
T 3t7c_A          106 AAVDDGVTQLGRLDIVLANAA  126 (299)
T ss_dssp             HHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHhCCCCEEEECCC
Confidence            22332221  36999998876

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.22  E-value=0.044  Score=42.26  Aligned_cols=88  Identities=13%  Similarity=0.061  Sum_probs=61.2

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHhhCCC-eeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEKLGFD-DAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      ..+|.|.  |.+|...++..+..|.  +|++.++++++.+.+. +.|.. ...+ +.. ++  .+     .+.|+||-|+
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-~~G~~~~~~~-~~~-~~--~~-----~~aDvVilav  102 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGTT-SIA-KV--ED-----FSPDFVMLSS  102 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEES-CTT-GG--GG-----GCCSEEEECS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HCCCcchhcC-CHH-HH--hh-----ccCCEEEEeC
Confidence            3688888  9999999999999998  9999999999988888 78763 2221 111 10  11     1488999888


Q ss_pred             ChH----HHHHHHHhhccCcEEEEEcc
Q 043295          112 GGE----MLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       112 g~~----~~~~~~~~l~~~G~~v~~g~  134 (223)
                      ...    .+......++++..++.++.
T Consensus       103 p~~~~~~vl~~l~~~l~~~~iv~d~~S  129 (314)
T 3ggo_A          103 PVRTFREIAKKLSYILSEDATVTDQGS  129 (314)
T ss_dssp             CGGGHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             CHHHHHHHHHHHhhccCCCcEEEECCC
Confidence            753    34444556677777776654

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.19  E-value=0.014  Score=43.82  Aligned_cols=78  Identities=19%  Similarity=0.319  Sum_probs=48.8

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC-HHHHHHHHH---hhCCCe-e--eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT-NEKVAILKE---KLGFDD-A--FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~-~~~~~~~~~---~~g~~~-~--~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -.++++||+   |++|.+.++.....|++|+.++++ ++..+.+.+   +.+... +  .|..+.++..+.+.+...  +
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  106 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG  106 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            467899999   899999998888899999999984 444333331   234322 1  233333122333332221  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++.+.|
T Consensus       107 ~id~li~nAg  116 (271)
T 4iin_A          107 GLSYLVNNAG  116 (271)
T ss_dssp             SCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999887

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=96.18  E-value=0.0053  Score=45.67  Aligned_cols=93  Identities=13%  Similarity=0.149  Sum_probs=55.8

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChH
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGE  114 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~  114 (223)
                      +++||+   |++|.++++.....|++|+.+++++++.+    .   ....|-.+.+...+.+.+ ..+++|+++++.|..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~----~---~~~~Dl~~~~~v~~~~~~-~~~~id~lv~~Ag~~   73 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI----A---DLSTAEGRKQAIADVLAK-CSKGMDGLVLCAGLG   73 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE----C---CTTSHHHHHHHHHHHHTT-CTTCCSEEEECCCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhc----c---ccccCCCCHHHHHHHHHH-hCCCCCEEEECCCCC
Confidence            468888   89999999888889999999998764321    0   111122221012222222 224689999988731


Q ss_pred             H-------------------HHHHHHhhcc--CcEEEEEcccccc
Q 043295          115 M-------------------LEAAVANMNL--FGRVAACGVISEC  138 (223)
Q Consensus       115 ~-------------------~~~~~~~l~~--~G~~v~~g~~~~~  138 (223)
                      .                   .+.++..+..  .|++|.++.....
T Consensus        74 ~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  118 (257)
T 1fjh_A           74 PQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASA  118 (257)
T ss_dssp             TTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG
T ss_pred             CCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhh
Confidence            1                   2234444433  3899998876543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=96.18  E-value=0.025  Score=42.36  Aligned_cols=94  Identities=14%  Similarity=0.057  Sum_probs=61.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe-eeecCCcccHHHHHHHhCCCCccEEEcCC-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD-AFNYKEETDLKATLKRYFPDGIDVYFDNV-  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~~d~vid~~-  111 (223)
                      .++.+||=. .|.|..+..+++. |++|++++.++.-++.+++...... ..+..+. +.  .......+.||+|+-+. 
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~-~~--~~~~~~~~~fD~Vv~~~~  119 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADRCVTIDLLDI-TA--EIPKELAGHFDFVLNDRL  119 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCT-TS--CCCGGGTTCCSEEEEESC
T ss_pred             CCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhccceeeeeec-cc--ccccccCCCccEEEEhhh
Confidence            788999988 8899999998875 8899999999999999884443221 1111111 00  00001123699987542 


Q ss_pred             ----Ch----HHHHHHHHhhccCcEEEEEc
Q 043295          112 ----GG----EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 ----g~----~~~~~~~~~l~~~G~~v~~g  133 (223)
                          ..    ..+....+++ |||+++..-
T Consensus       120 l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          120 INRFTTEEARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             GGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             hHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence                21    1456667788 999988653

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.17  E-value=0.012  Score=43.75  Aligned_cols=97  Identities=15%  Similarity=0.184  Sum_probs=60.9

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCC--CCccEEEc
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFP--DGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~--~~~d~vid  109 (223)
                      +-++++||+   |++|.+.++.....|++|+.+++++.+.+.      ....+|..+.++..+.+.+...  +++|++++
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~------~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~   93 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD------HSFTIKDSGEEEIKSVIEKINSKSIKVDTFVC   93 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS------EEEECSCSSHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc------cceEEEeCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            457889999   899999999888899999999988754221      1112233332133333333332  27999999


Q ss_pred             CCCh------------HHH---------------HHHHHhhccCcEEEEEccccc
Q 043295          110 NVGG------------EML---------------EAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       110 ~~g~------------~~~---------------~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      +.|.            +.+               +.+...++++|+++.++....
T Consensus        94 ~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  148 (251)
T 3orf_A           94 AAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAA  148 (251)
T ss_dssp             CCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred             CCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhh
Confidence            8872            011               123345566789999887654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.17  E-value=0.077  Score=37.92  Aligned_cols=90  Identities=13%  Similarity=0.101  Sum_probs=60.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC---------------Ce--ee--ecCCcccHHH
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF---------------DD--AF--NYKEETDLKA   94 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~---------------~~--~~--~~~~~~~~~~   94 (223)
                      .++.+||-. .|.|..+..+++. |++|++++.|+.-++.+++..+.               ..  .+  |..+. .+.+
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l-~~~~   98 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL-TARD   98 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS-THHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC-Cccc
Confidence            678899988 8889999999886 89999999999998888854432               11  11  11111 1111


Q ss_pred             HHHHhCCCCccEEEcCC-----Ch----HHHHHHHHhhccCcEEEEE
Q 043295           95 TLKRYFPDGIDVYFDNV-----GG----EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus        95 ~i~~~~~~~~d~vid~~-----g~----~~~~~~~~~l~~~G~~v~~  132 (223)
                            .+.||+|++..     ..    ..+....+.|+|||+++.+
T Consensus        99 ------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           99 ------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             ------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             ------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence                  02499998632     11    1466788899999994433

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.17  E-value=0.071  Score=40.40  Aligned_cols=97  Identities=12%  Similarity=0.060  Sum_probs=64.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||-. +|.|..+..+++..|++|++++.++..++.+++.   .|...-+..... ++.+ + ...++.+|+|+..
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~~fD~v~~~  157 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG-SFLE-I-PCEDNSYDFIWSQ  157 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEEC-CTTS-C-SSCTTCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEc-Cccc-C-CCCCCCEeEEEec
Confidence            678899988 8899999999998899999999999887777632   233211111111 1110 0 0112369999754


Q ss_pred             CC-------hHHHHHHHHhhccCcEEEEEcc
Q 043295          111 VG-------GEMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       111 ~g-------~~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      -.       ...+..+.++|+|||.++....
T Consensus       158 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          158 DAFLHSPDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            32       1357888899999999988754

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.16  E-value=0.087  Score=40.04  Aligned_cols=83  Identities=17%  Similarity=0.090  Sum_probs=57.0

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh-HH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG-EM  115 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~-~~  115 (223)
                      +|.|.  |.+|...++.....|.+|++.++++++.+.+. +.|...   ..   ++.+.+.     +.|+|+.|+.. ..
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~---~~---~~~~~~~-----~~D~vi~~v~~~~~   74 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-AAGAET---AS---TAKAIAE-----QCDVIITMLPNSPH   74 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEE---CS---SHHHHHH-----HCSEEEECCSSHHH
T ss_pred             eEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HCCCee---cC---CHHHHHh-----CCCEEEEECCCHHH
Confidence            67788  99999988888888999999999998888887 556421   11   2333332     27888888873 33


Q ss_pred             HHHHH-------HhhccCcEEEEEc
Q 043295          116 LEAAV-------ANMNLFGRVAACG  133 (223)
Q Consensus       116 ~~~~~-------~~l~~~G~~v~~g  133 (223)
                      +...+       ..++++..++.++
T Consensus        75 ~~~~~~~~~~l~~~l~~~~~vv~~s   99 (299)
T 1vpd_A           75 VKEVALGENGIIEGAKPGTVLIDMS   99 (299)
T ss_dssp             HHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             HHHHHhCcchHhhcCCCCCEEEECC
Confidence            44443       4566666666654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.16  E-value=0.021  Score=43.11  Aligned_cols=101  Identities=14%  Similarity=0.146  Sum_probs=62.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC------------HHHHHHHHH---hhCCCee---eecCCcccHHH
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT------------NEKVAILKE---KLGFDDA---FNYKEETDLKA   94 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~------------~~~~~~~~~---~~g~~~~---~~~~~~~~~~~   94 (223)
                      .++++||+   +++|.+.++.....|++|+.++++            .++.+.+.+   ..+....   .|-.+.++..+
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   88 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR   88 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence            57899999   799999999888999999999876            444443321   2333221   24343312322


Q ss_pred             HHHHhCC--CCccEEEcCCCh---------HHH---------------HHHHHhhccCcEEEEEcccc
Q 043295           95 TLKRYFP--DGIDVYFDNVGG---------EML---------------EAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        95 ~i~~~~~--~~~d~vid~~g~---------~~~---------------~~~~~~l~~~G~~v~~g~~~  136 (223)
                      .+.+...  +++|+++++.|.         +.+               +.++..+..+|+++.++...
T Consensus        89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  156 (287)
T 3pxx_A           89 ELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVA  156 (287)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHH
T ss_pred             HHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccch
Confidence            2332221  269999998872         111               12334456679999887643

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.15  E-value=0.018  Score=43.44  Aligned_cols=92  Identities=17%  Similarity=0.100  Sum_probs=63.8

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE--Cc-hHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS--GA-YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~-vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      .+||+..-+...|.+..  -.|++++|.  |. +|..+++++...|++|+...+..                    . ++
T Consensus       140 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------------~-~L  198 (286)
T 4a5o_A          140 LRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------------R-DL  198 (286)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------------S-CH
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------------c-CH
Confidence            34555455555565555  689999999  54 89999999999999988765321                    1 34


Q ss_pred             HHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      .+.+++     .|+++.++|.+.+ -.-+.++++..++.+|...
T Consensus       199 ~~~~~~-----ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~~  236 (286)
T 4a5o_A          199 ADHVSR-----ADLVVVAAGKPGL-VKGEWIKEGAIVIDVGINR  236 (286)
T ss_dssp             HHHHHT-----CSEEEECCCCTTC-BCGGGSCTTCEEEECCSCS
T ss_pred             HHHhcc-----CCEEEECCCCCCC-CCHHHcCCCeEEEEecccc
Confidence            444433     8999999986532 1235679999999998654

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.15  E-value=0.017  Score=44.77  Aligned_cols=77  Identities=16%  Similarity=0.288  Sum_probs=48.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC-----HHHHHHHHH---hhCCCe-e--eecCCcccHHHHHHHhCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT-----NEKVAILKE---KLGFDD-A--FNYKEETDLKATLKRYFP  101 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~-----~~~~~~~~~---~~g~~~-~--~~~~~~~~~~~~i~~~~~  101 (223)
                      .++++||+   |++|.+.++.....|++|++++++     .++.+.+.+   ..+... .  .|-.+.+++.+.+.+...
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~   83 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG   83 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            35788999   899999999988999999998875     334343331   234321 1  233333233333333322


Q ss_pred             --CCccEEEcCCC
Q 043295          102 --DGIDVYFDNVG  112 (223)
Q Consensus       102 --~~~d~vid~~g  112 (223)
                        +++|+++++.|
T Consensus        84 ~~g~iD~lVnnAG   96 (324)
T 3u9l_A           84 EDGRIDVLIHNAG   96 (324)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence              36999999988

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.15  E-value=0.041  Score=40.78  Aligned_cols=70  Identities=23%  Similarity=0.285  Sum_probs=47.9

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      ..++++||+   |++|.+.++.....|++|+.++++++.   ++ +++.... .|- .. +....+.+..  ++|+++++
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~---~~-~~~~~~~~~D~-~~-~~~~~~~~~~--~iD~lv~~   88 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEEL---LK-RSGHRYVVCDL-RK-DLDLLFEKVK--EVDILVLN   88 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HH-HTCSEEEECCT-TT-CHHHHHHHSC--CCSEEEEC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH---HH-hhCCeEEEeeH-HH-HHHHHHHHhc--CCCEEEEC
Confidence            567899999   899999998888899999999988743   33 4442222 233 11 3333333332  69999998


Q ss_pred             CC
Q 043295          111 VG  112 (223)
Q Consensus       111 ~g  112 (223)
                      .|
T Consensus        89 Ag   90 (249)
T 1o5i_A           89 AG   90 (249)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.13  E-value=0.017  Score=43.60  Aligned_cols=76  Identities=16%  Similarity=0.232  Sum_probs=47.8

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe---eeecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      -.++++||+   +++|.+.++.....|++|+.+++++...+... ++   +...   ..|-.+. +-.+.+.+...  ++
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~Dv~d~-~~v~~~~~~~~~~g~  106 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVAD-EIADGGGSAEAVVADLADL-EGAANVAEELAATRR  106 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHH-HHHTTTCEEEEEECCTTCH-HHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH-HHHhcCCcEEEEEecCCCH-HHHHHHHHHHHhcCC
Confidence            457899999   89999999888889999999996654333333 33   3211   1233333 22222222111  37


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus       107 iD~lv~nAg  115 (273)
T 3uf0_A          107 VDVLVNNAG  115 (273)
T ss_dssp             CCEEEECCC
T ss_pred             CcEEEECCC
Confidence            999999886

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=96.11  E-value=0.039  Score=40.41  Aligned_cols=96  Identities=14%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHh---hCCC-eeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEK---LGFD-DAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~---~g~~-~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      .++.+||-. ++.|..+..+++.. +.+|++++.+++..+.+++.   .|.. .+ ..... +..+.+.....+.||+|+
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-~~~~~-d~~~~~~~~~~~~fD~V~  147 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQV-RIIEG-NALEQFENVNDKVYDMIF  147 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTE-EEEES-CGGGCHHHHTTSCEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-EEEEC-CHHHHHHhhccCCccEEE
Confidence            678898888 88899999999854 67999999999888777632   3432 22 11111 121222201134799887


Q ss_pred             cCCC-h---HHHHHHHHhhccCcEEEEE
Q 043295          109 DNVG-G---EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       109 d~~g-~---~~~~~~~~~l~~~G~~v~~  132 (223)
                      -... .   ..+..+.+.|++||.++.-
T Consensus       148 ~~~~~~~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          148 IDAAKAQSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             EETTSSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EcCcHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            4332 2   3567888999999999773

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=96.10  E-value=0.012  Score=44.53  Aligned_cols=96  Identities=18%  Similarity=0.114  Sum_probs=65.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCe-eeecCCcccHHHHHHHhCCC-CccEE-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDD-AFNYKEETDLKATLKRYFPD-GIDVY-  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~-~~~~~~~~~~~~~i~~~~~~-~~d~v-  107 (223)
                      ++|++||=. .++|..++.+|+.-.++|++++.++...+.+++   ..|... +--...  +.    +++... .+|.| 
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~--D~----~~~~~~~~~D~Vi  197 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM--DN----RDFPGENIADRIL  197 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS--CT----TTCCCCSCEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeC--cH----HHhccccCCCEEE
Confidence            789998888 888988888888755699999999998887763   234432 211111  11    222333 68855 


Q ss_pred             EcCCCh--HHHHHHHHhhccCcEEEEEcccc
Q 043295          108 FDNVGG--EMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       108 id~~g~--~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      ++...+  +.+..++.++++||.+...+...
T Consensus       198 ~~~p~~~~~~l~~a~~~lk~gG~ih~~~~~~  228 (278)
T 3k6r_A          198 MGYVVRTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             ECCCSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ECCCCcHHHHHHHHHHHcCCCCEEEEEeeec
Confidence            454433  56888999999999887665543

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=96.10  E-value=0.022  Score=41.97  Aligned_cols=78  Identities=19%  Similarity=0.262  Sum_probs=46.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEE-ecCHHHHHHHHHh---hCCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGS-AGTNEKVAILKEK---LGFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~-~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      +++++||+   |++|...++.....|++|+.+ .+++++.+.+.++   .+....   .|-.+.+.+.+.+.+...  ++
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGR   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            46789999   899999998888899999998 4555544433222   243211   233333123222322211  26


Q ss_pred             ccEEEcCCCh
Q 043295          104 IDVYFDNVGG  113 (223)
Q Consensus       104 ~d~vid~~g~  113 (223)
                      +|++|++.|.
T Consensus        84 ~d~vi~~Ag~   93 (247)
T 2hq1_A           84 IDILVNNAGI   93 (247)
T ss_dssp             CCEEEECC--
T ss_pred             CCEEEECCCC
Confidence            9999998873

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.09  E-value=0.056  Score=40.75  Aligned_cols=87  Identities=14%  Similarity=0.082  Sum_probs=58.7

Q ss_pred             EEEEE--CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGE  114 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~  114 (223)
                      +|.|.  |.+|...++.++..|.  +|++.++++++.+.++ +.|...... .   +..+.+.    .+.|+|+-|+...
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-~~g~~~~~~-~---~~~~~~~----~~aDvVilavp~~   73 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGT-T---SIAKVED----FSPDFVMLSSPVR   73 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEE-S---CGGGGGG----TCCSEEEECSCHH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-HCCCccccc-C---CHHHHhc----CCCCEEEEcCCHH
Confidence            67788  9999999998888888  8999999999888887 777632111 1   1111111    0389999999864


Q ss_pred             HH----HHHHHhhccCcEEEEEcc
Q 043295          115 ML----EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       115 ~~----~~~~~~l~~~G~~v~~g~  134 (223)
                      ..    ......++++..++.++.
T Consensus        74 ~~~~v~~~l~~~l~~~~iv~~~~~   97 (281)
T 2g5c_A           74 TFREIAKKLSYILSEDATVTDQGS   97 (281)
T ss_dssp             HHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             HHHHHHHHHHhhCCCCcEEEECCC
Confidence            33    333345667776666554

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.08  E-value=0.021  Score=42.45  Aligned_cols=76  Identities=18%  Similarity=0.294  Sum_probs=47.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH--HHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK--VAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~--~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++  .+.+. ..+....   .|-.+.+++.+.+.+...  +++|
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIA-RHGVKAVHHPADLSDVAQIEALFALAEREFGGVD   81 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHH-TTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHH-hcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            46789999   899999998888899999999987652  12222 2343221   243333123333332211  3699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++++.|
T Consensus        82 ~lv~~Ag   88 (255)
T 2q2v_A           82 ILVNNAG   88 (255)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999887

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.08  E-value=0.023  Score=42.88  Aligned_cols=77  Identities=13%  Similarity=0.246  Sum_probs=49.7

Q ss_pred             hCCCEEEEE---Cc--hHHHHHHHHHHcCCeEEEEecCH--HHHHHHHHhhCCCee--eecCCcccHHH---HHHHhCCC
Q 043295           35 QKGEKVFVS---GA--YGHLVGQYAKLGGCYVVGSAGTN--EKVAILKEKLGFDDA--FNYKEETDLKA---TLKRYFPD  102 (223)
Q Consensus        35 ~~g~~vlI~---g~--vG~~a~qla~~~g~~v~~~~~~~--~~~~~~~~~~g~~~~--~~~~~~~~~~~---~i~~~~~~  102 (223)
                      -+++++||+   |+  +|.+.++.....|++|+.++++.  +..+.+.++.+....  .|-.+.++..+   .+.+.. +
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~-g  102 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVW-D  102 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHC-S
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHc-C
Confidence            457899999   33  99999988888999999999887  555555534443222  23333312222   232222 3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus       103 ~id~li~nAg  112 (280)
T 3nrc_A          103 GLDAIVHSIA  112 (280)
T ss_dssp             SCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            6999999886

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.07  E-value=0.083  Score=40.70  Aligned_cols=95  Identities=15%  Similarity=0.087  Sum_probs=63.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHh---hCCCee-eecCCcccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEK---LGFDDA-FNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~---~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      +++++||=. .+.|..+.++++..  +.+|++++.++.+.+.+++.   +|...+ +-..+...+    .. ..+.||.|
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~----~~-~~~~fD~I  191 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI----GE-LNVEFDKI  191 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG----GG-GCCCEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhc----cc-ccccCCEE
Confidence            788888877 78899999999986  36999999999988877643   365332 111111011    11 13369988


Q ss_pred             Ec---CCC--------------------------hHHHHHHHHhhccCcEEEEEcc
Q 043295          108 FD---NVG--------------------------GEMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       108 id---~~g--------------------------~~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      +-   |+|                          ...+..++++|++||+++....
T Consensus       192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc  247 (315)
T 1ixk_A          192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  247 (315)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            73   333                          1345678889999999987653

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.07  E-value=0.2  Score=38.92  Aligned_cols=131  Identities=15%  Similarity=0.141  Sum_probs=76.2

Q ss_pred             CEEEEE--CchHHHHHHHHH-H-cCCeEEEE-ecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           38 EKVFVS--GAYGHLVGQYAK-L-GGCYVVGS-AGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~-~-~g~~v~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -+|.|.  |.+|...++..+ . .+++++++ ++++++.+.+.+++|...+++     ++.+.+.   ..++|+|+.|+.
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~-----~~~~~l~---~~~~D~V~i~tp   80 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYT-----NYKDMID---TENIDAIFIVAP   80 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEES-----CHHHHHT---TSCCSEEEECSC
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccC-----CHHHHhc---CCCCCEEEEeCC
Confidence            467787  899988887776 4 47787665 566666665554677754431     3333331   126999999998


Q ss_pred             h-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchH---HHH----hh-cceEEeeeccCccchHHHHHHHHHHHHH
Q 043295          113 G-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMI---DIV----YK-RIKIQGFLSTDHFDLHQDFISMTCDALR  183 (223)
Q Consensus       113 ~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~---~~~----~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~  183 (223)
                      . .+...+..+++.| +.|.+..+.         ..+..   .+.    .+ ++.+.-....    .+...+..+.+++.
T Consensus        81 ~~~h~~~~~~al~~G-~~v~~eKp~---------~~~~~~~~~l~~~a~~~~~~~~~~~~~~----r~~p~~~~~~~~i~  146 (346)
T 3cea_A           81 TPFHPEMTIYAMNAG-LNVFCEKPL---------GLDFNEVDEMAKVIKSHPNQIFQSGFMR----RYDDSYRYAKKIVD  146 (346)
T ss_dssp             GGGHHHHHHHHHHTT-CEEEECSCC---------CSCHHHHHHHHHHHHTCTTSCEECCCGG----GTCHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHCC-CEEEEcCCC---------CCCHHHHHHHHHHHHhCCCCeEEEeccc----ccCHHHHHHHHHHH
Confidence            6 4677777788765 555554322         12221   121    12 3333211111    12344777888889


Q ss_pred             cCCCCcc
Q 043295          184 AGKIQPL  190 (223)
Q Consensus       184 ~g~i~~~  190 (223)
                      +|.+-..
T Consensus       147 ~g~iG~i  153 (346)
T 3cea_A          147 NGDIGKI  153 (346)
T ss_dssp             TTTTCSE
T ss_pred             cCCCCCe
Confidence            8887544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.07  E-value=0.07  Score=43.46  Aligned_cols=96  Identities=20%  Similarity=0.154  Sum_probs=65.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      ++|++||=. .+.|..+.++|...+  .+|++++.++.+.+.+++   .+|.. +.-.. . +..+ +.....+.||.|+
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~-~-Da~~-l~~~~~~~FD~Il  175 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQ-A-PPRA-LAEAFGTYFHRVL  175 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEEC-S-CHHH-HHHHHCSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEE-C-CHHH-hhhhccccCCEEE
Confidence            788888777 788999999998874  599999999998877763   35665 32122 1 2222 2222234799987


Q ss_pred             -c--CCC--------------------------hHHHHHHHHhhccCcEEEEEcc
Q 043295          109 -D--NVG--------------------------GEMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 -d--~~g--------------------------~~~~~~~~~~l~~~G~~v~~g~  134 (223)
                       |  |+|                          ...+..++++|++||+++....
T Consensus       176 ~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC  230 (464)
T 3m6w_A          176 LDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC  230 (464)
T ss_dssp             EECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             ECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence             3  433                          1245677889999999987543

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.06  E-value=0.01  Score=46.08  Aligned_cols=86  Identities=10%  Similarity=-0.001  Sum_probs=57.9

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .|++|.|.  |.+|...++.++..|.+|++.+++..+.+... .+|+...       ++.+.+.+     .|+|+-++..
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~-------~l~ell~~-----aDvV~l~~P~  210 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQ-RLGLRQV-------ACSELFAS-----SDFILLALPL  210 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHH-HHTEEEC-------CHHHHHHH-----CSEEEECCCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHH-hcCceeC-------CHHHHHhh-----CCEEEEcCCC
Confidence            36789999  99999999999999999999998864445555 5665221       23333332     6777766542


Q ss_pred             --H---H-HHHHHHhhccCcEEEEEcc
Q 043295          114 --E---M-LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       114 --~---~-~~~~~~~l~~~G~~v~~g~  134 (223)
                        +   . -...+..|++++.++.++.
T Consensus       211 t~~t~~li~~~~l~~mk~gailIN~ar  237 (330)
T 4e5n_A          211 NADTLHLVNAELLALVRPGALLVNPCR  237 (330)
T ss_dssp             STTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred             CHHHHHHhCHHHHhhCCCCcEEEECCC
Confidence              1   1 1356667777777777663

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.05  E-value=0.0051  Score=45.24  Aligned_cols=95  Identities=17%  Similarity=0.080  Sum_probs=59.6

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      .++|||+   |++|...++.+...| ++|+++++++++.+.+. ..++..+ .|..+.    +.+.+... ++|+||.+.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~-~~~~~~~~~Dl~d~----~~~~~~~~-~~D~vv~~a   96 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPY-PTNSQIIMGDVLNH----AALKQAMQ-GQDIVYANL   96 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSC-CTTEEEEECCTTCH----HHHHHHHT-TCSEEEEEC
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccc-cCCcEEEEecCCCH----HHHHHHhc-CCCEEEEcC
Confidence            4578999   899999999888889 79999999887644322 1122111 233332    22333322 589999988


Q ss_pred             ChH----HHHHHHHhhccC--cEEEEEccccc
Q 043295          112 GGE----MLEAAVANMNLF--GRVAACGVISE  137 (223)
Q Consensus       112 g~~----~~~~~~~~l~~~--G~~v~~g~~~~  137 (223)
                      |..    ..+..++.+...  +++|.++....
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A           97 TGEDLDIQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             CSTTHHHHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             CCCchhHHHHHHHHHHHHcCCCEEEEEeccee
Confidence            853    233455555433  68998876543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.05  E-value=0.028  Score=42.09  Aligned_cols=97  Identities=15%  Similarity=0.196  Sum_probs=64.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||-. ++.|..+..+++..|.+|++++.++...+.+++.   .|...-+..... +..+ + ...++.+|+|+..
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~~fD~v~~~  136 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYA-DAMD-L-PFEDASFDAVWAL  136 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-CTTS-C-CSCTTCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC-cccc-C-CCCCCCccEEEEe
Confidence            678899999 7889999999998899999999999887777632   233210111111 1100 0 0112369998742


Q ss_pred             -----CCh--HHHHHHHHhhccCcEEEEEcc
Q 043295          111 -----VGG--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       111 -----~g~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                           ...  ..+..+.++|+|+|+++....
T Consensus       137 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  167 (273)
T 3bus_A          137 ESLHHMPDRGRALREMARVLRPGGTVAIADF  167 (273)
T ss_dssp             SCTTTSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             chhhhCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence                 222  357788899999999987654

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.04  E-value=0.022  Score=42.49  Aligned_cols=77  Identities=18%  Similarity=0.194  Sum_probs=47.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEE-ecCHHHHHHHHH---hhCCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGS-AGTNEKVAILKE---KLGFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~-~~~~~~~~~~~~---~~g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .++++||+   +++|.+.++.....|++|+.+ .++.++.+...+   +.|....   .|-.+.++....+.+...  ++
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGE   86 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            57899999   899999998888889999988 444444433322   2343221   233333122222332221  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        87 id~lv~nAg   95 (259)
T 3edm_A           87 IHGLVHVAG   95 (259)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCC
Confidence            999998876

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.04  E-value=0.028  Score=41.96  Aligned_cols=77  Identities=21%  Similarity=0.244  Sum_probs=47.9

Q ss_pred             CCCEEEEE--C---chHHHHHHHHHHcCCeEEEEecCHH---HHHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS--G---AYGHLVGQYAKLGGCYVVGSAGTNE---KVAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~--g---~vG~~a~qla~~~g~~v~~~~~~~~---~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .++++||+  +   ++|.+.++.....|++|+.++++++   ..+.+.++.+....  .|-.+.++..+.+.+...  ++
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999  3   7999998888888999999998875   33444323342222  243333123222322211  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        87 iD~lv~~Ag   95 (261)
T 2wyu_A           87 LDYLVHAIA   95 (261)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=96.04  E-value=0.013  Score=42.81  Aligned_cols=92  Identities=8%  Similarity=0.025  Sum_probs=64.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC-CeeeecCCcccHHHHHHHhC-CCCccEEEcCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF-DDAFNYKEETDLKATLKRYF-PDGIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~~~~-~~~~d~vid~~  111 (223)
                      .++.+||-. .+.|..+..+++. |++|++++.++..++.++ +... ..++..+-.    +.+ ... .+.+|+|+...
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~d~~----~~~-~~~~~~~fD~v~~~~  119 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLAR-ANAPHADVYEWNGK----GEL-PAGLGAPFGLIVSRR  119 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHH-HHCTTSEEEECCSC----SSC-CTTCCCCEEEEEEES
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHH-HhCCCceEEEcchh----hcc-CCcCCCCEEEEEeCC
Confidence            678898888 8889998888887 889999999999999888 4422 122211110    001 011 23799999765


Q ss_pred             Ch-HHHHHHHHhhccCcEEEEEc
Q 043295          112 GG-EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 g~-~~~~~~~~~l~~~G~~v~~g  133 (223)
                      .- ..+..+.+.|+|+|.++..+
T Consensus       120 ~~~~~l~~~~~~LkpgG~l~~~~  142 (226)
T 3m33_A          120 GPTSVILRLPELAAPDAHFLYVG  142 (226)
T ss_dssp             CCSGGGGGHHHHEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHcCCCcEEEEeC
Confidence            43 56788899999999999443

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.03  E-value=0.01  Score=44.93  Aligned_cols=93  Identities=14%  Similarity=0.071  Sum_probs=59.5

Q ss_pred             EEEEE---CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           39 KVFVS---GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      +|||+   |.+|...++.+... |.+|+++++++++...+. ..++..+ .|..+.    +.+.+... ++|+||.+.+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~-~~~v~~~~~D~~d~----~~l~~~~~-~~d~vi~~a~~   75 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDW-RGKVSVRQLDYFNQ----ESMVEAFK-GMDTVVFIPSI   75 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGG-BTTBEEEECCTTCH----HHHHHHTT-TCSEEEECCCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhh-hCCCEEEEcCCCCH----HHHHHHHh-CCCEEEEeCCC
Confidence            48888   88999988887776 899999999987755443 3344222 344332    23444433 59999999873


Q ss_pred             --------HHHHHHHHhhccC--cEEEEEccccc
Q 043295          114 --------EMLEAAVANMNLF--GRVAACGVISE  137 (223)
Q Consensus       114 --------~~~~~~~~~l~~~--G~~v~~g~~~~  137 (223)
                              ......++.+...  ++++.++..+.
T Consensus        76 ~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~  109 (289)
T 3e48_A           76 IHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYAD  109 (289)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred             CccchhhHHHHHHHHHHHHHcCCCEEEEEcccCC
Confidence                    1223444545433  57888876543

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.03  E-value=0.014  Score=42.91  Aligned_cols=76  Identities=17%  Similarity=0.206  Sum_probs=50.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHhh-CCC-ee--eecCCcccHH---HHHHHhCCC-
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEKL-GFD-DA--FNYKEETDLK---ATLKRYFPD-  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~~-g~~-~~--~~~~~~~~~~---~~i~~~~~~-  102 (223)
                      ++++++|+   |++|..+++.....|  ++|++++++.++.+.+. ++ +.. ..  .|..+.+.+.   +.+.+..+. 
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   80 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK-SIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH-TCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHH-hccCCceEEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence            36788999   899999998888889  99999999988777666 44 221 11  2333321222   223232332 


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|++|.+.|
T Consensus        81 ~id~li~~Ag   90 (250)
T 1yo6_A           81 GLSLLINNAG   90 (250)
T ss_dssp             CCCEEEECCC
T ss_pred             CCcEEEECCc
Confidence            6999999876

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=96.03  E-value=0.14  Score=36.77  Aligned_cols=94  Identities=18%  Similarity=0.134  Sum_probs=65.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHH-hCCC-CccEEEcCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKR-YFPD-GIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~-~~~~-~~d~vid~~  111 (223)
                      .++.+||-. ++.|..+..+++. |++|++++.++...+.++ +.+.......    ++.+.... ...+ .+|+|+...
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~-~~~~~~~~~~----~~~~~~~~~~~~~~~fD~v~~~~  124 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAAR-AAGAGEVHLA----SYAQLAEAKVPVGKDYDLICANF  124 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHH-HTCSSCEEEC----CHHHHHTTCSCCCCCEEEEEEES
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHH-Hhcccccchh----hHHhhcccccccCCCccEEEECc
Confidence            677888888 8889988888887 889999999999999988 5433222221    22221111 1223 599997643


Q ss_pred             C------hHHHHHHHHhhccCcEEEEEcc
Q 043295          112 G------GEMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       112 g------~~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .      ...+..+.+.|+++|.++....
T Consensus       125 ~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          125 ALLHQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             CCCSSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhhhhhHHHHHHHHHHHhCCCeEEEEEec
Confidence            2      2468888999999999998654

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.03  E-value=0.027  Score=42.36  Aligned_cols=76  Identities=20%  Similarity=0.334  Sum_probs=48.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH-------HH----HHHHhhCCCee---eecCCcccHHHHHHH
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK-------VA----ILKEKLGFDDA---FNYKEETDLKATLKR   98 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~-------~~----~~~~~~g~~~~---~~~~~~~~~~~~i~~   98 (223)
                      .++++||+   +++|.+.++.....|++|+.++++.++       .+    .++ ..+....   .|-.+.++..+.+.+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~   83 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVN-AAGGQGLALKCDIREEDQVRAAVAA   83 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHH-HHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHH-hcCCeEEEEeCCCCCHHHHHHHHHH
Confidence            57889999   899999998888899999999987642       22    222 3343211   344433122222222


Q ss_pred             hCC--CCccEEEcCCC
Q 043295           99 YFP--DGIDVYFDNVG  112 (223)
Q Consensus        99 ~~~--~~~d~vid~~g  112 (223)
                      ...  +++|+++++.|
T Consensus        84 ~~~~~g~iD~lvnnAG   99 (274)
T 3e03_A           84 TVDTFGGIDILVNNAS   99 (274)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence            221  36999999887

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.03  E-value=0.028  Score=43.45  Aligned_cols=86  Identities=9%  Similarity=-0.002  Sum_probs=60.9

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEec-CHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAG-TNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      .|.+|.|.  |.+|...++.++..|.+|++.++ +.++ +... ++|+..+    +  ++.+.+.+     .|+|+-++.
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~-~~g~~~~----~--~l~ell~~-----aDvVil~~p  211 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS-SDEA-SYQATFH----D--SLDSLLSV-----SQFFSLNAP  211 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHH-HHTCEEC----S--SHHHHHHH-----CSEEEECCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhh-hcCcEEc----C--CHHHHHhh-----CCEEEEecc
Confidence            45689899  99999999999999999999998 7665 3455 6776321    1  23333332     788888776


Q ss_pred             h-H----HH-HHHHHhhccCcEEEEEcc
Q 043295          113 G-E----ML-EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 ~-~----~~-~~~~~~l~~~G~~v~~g~  134 (223)
                      . +    .+ ...+..+++++.++.++.
T Consensus       212 ~~~~t~~~i~~~~l~~mk~gailIn~ar  239 (320)
T 1gdh_A          212 STPETRYFFNKATIKSLPQGAIVVNTAR  239 (320)
T ss_dssp             CCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             CchHHHhhcCHHHHhhCCCCcEEEECCC
Confidence            3 1    12 346678888888888775

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.03  E-value=0.016  Score=45.45  Aligned_cols=87  Identities=21%  Similarity=0.181  Sum_probs=61.3

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .|.+|.|.  |.+|...++.++..|.+|++.++++...+... +.|+..+    +  ++.+.+.+     .|+|+-++..
T Consensus       163 ~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~----~--~l~ell~~-----aDvV~l~~Pl  230 (351)
T 3jtm_A          163 EGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEK-ETGAKFV----E--DLNEMLPK-----CDVIVINMPL  230 (351)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHH-HHCCEEC----S--CHHHHGGG-----CSEEEECSCC
T ss_pred             cCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHH-hCCCeEc----C--CHHHHHhc-----CCEEEECCCC
Confidence            46789999  99999999999999999999998765556666 6776332    1  33333322     7788776652


Q ss_pred             --H---H-HHHHHHhhccCcEEEEEcc
Q 043295          114 --E---M-LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       114 --~---~-~~~~~~~l~~~G~~v~~g~  134 (223)
                        +   . -...+..|++++.++.++.
T Consensus       231 t~~t~~li~~~~l~~mk~gailIN~aR  257 (351)
T 3jtm_A          231 TEKTRGMFNKELIGKLKKGVLIVNNAR  257 (351)
T ss_dssp             CTTTTTCBSHHHHHHSCTTEEEEECSC
T ss_pred             CHHHHHhhcHHHHhcCCCCCEEEECcC
Confidence              1   1 2456677888888887764

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=96.02  E-value=0.047  Score=39.92  Aligned_cols=94  Identities=15%  Similarity=0.225  Sum_probs=62.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      .++.+||-. ++.|..+..+++. |. +|++++.++...+.+++......+ ..... +..+ + ....+.+|+|+....
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~-d~~~-~-~~~~~~fD~v~~~~~  116 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGI-TYERA-DLDK-L-HLPQDSFDLAYSSLA  116 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSE-EEEEC-CGGG-C-CCCTTCEEEEEEESC
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCc-eEEEc-Chhh-c-cCCCCCceEEEEecc
Confidence            578898888 7889988888877 77 999999999998888833322111 11111 1111 0 011237999975432


Q ss_pred             -------hHHHHHHHHhhccCcEEEEEc
Q 043295          113 -------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       113 -------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                             ...+..+.++|+++|+++...
T Consensus       117 l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          117 LHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence                   135778889999999998754

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.02  E-value=0.046  Score=42.60  Aligned_cols=73  Identities=8%  Similarity=0.159  Sum_probs=50.7

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHc-CC-eEEEEecCHHHHHHHHHhhCCCee----eecCCcccHHHHHHHhCCCCcc
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLG-GC-YVVGSAGTNEKVAILKEKLGFDDA----FNYKEETDLKATLKRYFPDGID  105 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~-g~-~v~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~i~~~~~~~~d  105 (223)
                      -.+++|||+   |.+|..+++.+... |+ +|+++++++.+.+.+.+.+....+    .|..+    .+.+.+... ++|
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~l~~~~~-~~D   93 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRD----LERLNYALE-GVD   93 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTC----HHHHHHHTT-TCS
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCC----HHHHHHHHh-cCC
Confidence            356899999   89999998877777 98 999999998887766534432111    23332    233444443 599


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +||.+.+
T Consensus        94 ~Vih~Aa  100 (344)
T 2gn4_A           94 ICIHAAA  100 (344)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.01  E-value=0.055  Score=39.28  Aligned_cols=98  Identities=16%  Similarity=0.070  Sum_probs=65.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC------CeEEEEecCHHHHHHHHHh---hC-----CCee--eecCCcccHHHHHH
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG------CYVVGSAGTNEKVAILKEK---LG-----FDDA--FNYKEETDLKATLK   97 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g------~~v~~~~~~~~~~~~~~~~---~g-----~~~~--~~~~~~~~~~~~i~   97 (223)
                      +++++||-. .+.|..+..+++..+      .+|++++.++...+.+++.   .+     ...+  +..+-...+.+...
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  158 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK  158 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence            788999999 777999999999876      5999999999888777632   23     2222  11111101100001


Q ss_pred             HhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcc
Q 043295           98 RYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus        98 ~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .  .+.||+|+..... ..+....+.|+++|+++..-.
T Consensus       159 ~--~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          159 E--LGLFDAIHVGASASELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             H--HCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEE
T ss_pred             c--CCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEc
Confidence            1  2369999876654 456778899999999887654

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.01  E-value=0.027  Score=41.74  Aligned_cols=77  Identities=17%  Similarity=0.194  Sum_probs=47.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCe-EEEEecCH--HHHHHHHHhh-CCC-ee--eecCCc-ccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCY-VVGSAGTN--EKVAILKEKL-GFD-DA--FNYKEE-TDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~-v~~~~~~~--~~~~~~~~~~-g~~-~~--~~~~~~-~~~~~~i~~~~~--~  102 (223)
                      ++++++|+   |++|.+.++.....|++ |+.+++++  +..+.+.+.. +.. ..  .|-.+. ++..+.+.+...  +
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   83 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcC
Confidence            46789999   89999999888889996 88888875  3444444222 221 11  233322 133333332221  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        84 ~id~lv~~Ag   93 (254)
T 1sby_A           84 TVDILINGAG   93 (254)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            6999999987

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.01  E-value=0.024  Score=43.15  Aligned_cols=93  Identities=12%  Similarity=0.044  Sum_probs=62.6

Q ss_pred             cccchhhHHHHHHHHh--hCCCEEEEE--Cc-hHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHH
Q 043295           19 AGTSGFTAYVGFYEIS--QKGEKVFVS--GA-YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLK   93 (223)
Q Consensus        19 l~~~~~ta~~~l~~~~--~~g~~vlI~--g~-vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   93 (223)
                      +||+..-+...|.+..  -.|.+++|.  |. +|..+++++...|++|+...+....++                   +.
T Consensus       145 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~-------------------l~  205 (300)
T 4a26_A          145 TPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTED-------------------MI  205 (300)
T ss_dssp             CCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHH-------------------HH
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCch-------------------hh
Confidence            4555555555666655  689999999  55 899999999999999887764222111                   00


Q ss_pred             HHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           94 ATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        94 ~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      +.+++     .|+||.++|.+.+ -.-+.++++..++.+|...
T Consensus       206 ~~~~~-----ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~~  242 (300)
T 4a26_A          206 DYLRT-----ADIVIAAMGQPGY-VKGEWIKEGAAVVDVGTTP  242 (300)
T ss_dssp             HHHHT-----CSEEEECSCCTTC-BCGGGSCTTCEEEECCCEE
T ss_pred             hhhcc-----CCEEEECCCCCCC-CcHHhcCCCcEEEEEeccC
Confidence            22222     8899999986432 1224578999999998754

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.00  E-value=0.047  Score=42.02  Aligned_cols=95  Identities=15%  Similarity=0.191  Sum_probs=57.5

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecC---HHHHHHHHHhhC----CC-eeeecCCcccHHHHHHHhCCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGT---NEKVAILKEKLG----FD-DAFNYKEETDLKATLKRYFPDG  103 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~---~~~~~~~~~~~g----~~-~~~~~~~~~~~~~~i~~~~~~~  103 (223)
                      -.+++++|.  |+.|.+++..+...|+ +|+.+.|+   .++.+.+.++++    .. ..++..+.+.+.+.+.     .
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~-----~  220 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALA-----S  220 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH-----H
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhcc-----C
Confidence            467899999  9999999988888999 89999999   666555443333    21 2233322100122232     2


Q ss_pred             ccEEEcCCChHH--H-HH----HHHhhccCcEEEEEcc
Q 043295          104 IDVYFDNVGGEM--L-EA----AVANMNLFGRVAACGV  134 (223)
Q Consensus       104 ~d~vid~~g~~~--~-~~----~~~~l~~~G~~v~~g~  134 (223)
                      +|+||+|++...  . ..    ....+.++..+..+-.
T Consensus       221 ~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY  258 (312)
T 3t4e_A          221 ADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVY  258 (312)
T ss_dssp             CSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCC
T ss_pred             ceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEecc
Confidence            899999986321  0 11    1235566666666543

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=95.98  E-value=0.03  Score=43.89  Aligned_cols=86  Identities=23%  Similarity=0.235  Sum_probs=61.6

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .|++|.|.  |.+|...++.++..|.+|++.+++.+. +... ..|+..+    +  ++.+.+.+     .|+|+-++..
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-~~g~~~~----~--~l~ell~~-----aDiV~l~~Pl  225 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERAR-ADGFAVA----E--SKDALFEQ-----SDVLSVHLRL  225 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHH-HTTCEEC----S--SHHHHHHH-----CSEEEECCCC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHH-hcCceEe----C--CHHHHHhh-----CCEEEEeccC
Confidence            36789999  999999999999999999999977533 5555 6676422    1  34444433     7888877642


Q ss_pred             -H-----HHHHHHHhhccCcEEEEEcc
Q 043295          114 -E-----MLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       114 -~-----~~~~~~~~l~~~G~~v~~g~  134 (223)
                       +     .-...+..|++++.++.++.
T Consensus       226 t~~t~~li~~~~l~~mk~gailIN~aR  252 (352)
T 3gg9_A          226 NDETRSIITVADLTRMKPTALFVNTSR  252 (352)
T ss_dssp             STTTTTCBCHHHHTTSCTTCEEEECSC
T ss_pred             cHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence             1     12356778899999988873

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.98  E-value=0.015  Score=44.01  Aligned_cols=91  Identities=12%  Similarity=0.040  Sum_probs=62.8

Q ss_pred             cccchhhHHHHHHHHh--hCCCEEEEE--Cc-hHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHH
Q 043295           19 AGTSGFTAYVGFYEIS--QKGEKVFVS--GA-YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLK   93 (223)
Q Consensus        19 l~~~~~ta~~~l~~~~--~~g~~vlI~--g~-vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   93 (223)
                      +||+..-+...|.+..  -.|++++|.  |. +|..+++++...|++|+...+..                    . ++.
T Consensus       140 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------------~-~L~  198 (285)
T 3p2o_A          140 LPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------------K-DLS  198 (285)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------------S-CHH
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------------h-hHH
Confidence            4444444555555555  689999999  54 89999999999999988765321                    1 333


Q ss_pred             HHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           94 ATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        94 ~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      +.+++     .|+++.++|.+.+ -.-+.++++..++.+|...
T Consensus       199 ~~~~~-----ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~~  235 (285)
T 3p2o_A          199 LYTRQ-----ADLIIVAAGCVNL-LRSDMVKEGVIVVDVGINR  235 (285)
T ss_dssp             HHHTT-----CSEEEECSSCTTC-BCGGGSCTTEEEEECCCEE
T ss_pred             HHhhc-----CCEEEECCCCCCc-CCHHHcCCCeEEEEeccCc
Confidence            33332     8999999986532 2235678999999998754

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=95.98  E-value=0.022  Score=41.84  Aligned_cols=76  Identities=22%  Similarity=0.317  Sum_probs=47.7

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEE-ecCHHHHHHHHHh---hCCCe---eeecCCcccHHHHHHHhCC--CCc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGS-AGTNEKVAILKEK---LGFDD---AFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~-~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      +++++|+   |++|...++.....|++|+.+ .+++++.+.+.++   .+...   ..|-.+.+++.+.+.+...  +++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678888   899999999888899999985 7777766544322   24321   1243333123332322211  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |++|++.|
T Consensus        81 d~li~~Ag   88 (244)
T 1edo_A           81 DVVVNNAG   88 (244)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999876

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.97  E-value=0.028  Score=40.67  Aligned_cols=89  Identities=16%  Similarity=-0.014  Sum_probs=59.3

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcCCChH
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDNVGGE  114 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~  114 (223)
                      +|||+   |.+|..+++.+...|++|+++++++.+.+.+. ..+...+ .|..+. +. +.   +  +++|+||.+.|..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~~D~~d~-~~-~~---~--~~~d~vi~~ag~~   73 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL-GATVATLVKEPLVL-TE-AD---L--DSVDAVVDALSVP   73 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT-CTTSEEEECCGGGC-CH-HH---H--TTCSEEEECCCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc-CCCceEEecccccc-cH-hh---c--ccCCEEEECCccC
Confidence            58888   89999999888888999999999988876554 3344322 244443 22 21   2  2599999999741


Q ss_pred             -----------HHHHHHHhhc-cCcEEEEEccc
Q 043295          115 -----------MLEAAVANMN-LFGRVAACGVI  135 (223)
Q Consensus       115 -----------~~~~~~~~l~-~~G~~v~~g~~  135 (223)
                                 .....++.+. .+++++.++..
T Consensus        74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           74 WGSGRGYLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             TTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             CCcchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence                       2234444443 34788888654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=95.97  E-value=0.022  Score=43.53  Aligned_cols=96  Identities=16%  Similarity=0.129  Sum_probs=63.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhC-------CCeeeecCCcccHHHHHHHhCCCCcc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLG-------FDDAFNYKEETDLKATLKRYFPDGID  105 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~~~~i~~~~~~~~d  105 (223)
                      ..+.+||+. +|.|..+..+++..+ .+|++++.++.-.+.+++.+.       ...+ ..... +..+.+.. .++.||
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v-~~~~~-D~~~~l~~-~~~~fD  165 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRA-EIVIA-NGAEYVRK-FKNEFD  165 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTE-EEEES-CHHHHGGG-CSSCEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCce-EEEEC-cHHHHHhh-CCCCce
Confidence            456899999 889999999998765 599999999998888874331       1111 11111 33333322 234799


Q ss_pred             EEEc-C----CC-------hHHHHHHHHhhccCcEEEEEc
Q 043295          106 VYFD-N----VG-------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       106 ~vid-~----~g-------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +|+- .    .+       .+.+..+.+.|+++|.++...
T Consensus       166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            8873 3    11       245678889999999998864

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.96  E-value=0.031  Score=43.20  Aligned_cols=78  Identities=19%  Similarity=0.222  Sum_probs=48.1

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC----------HHHHHHHHH---hhCCCee---eecCCcccHHHH
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT----------NEKVAILKE---KLGFDDA---FNYKEETDLKAT   95 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~----------~~~~~~~~~---~~g~~~~---~~~~~~~~~~~~   95 (223)
                      -.++++||+   +++|.+.++.....|++|+.++++          .++.+.+.+   ..|....   .|-.+.++..+.
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~  104 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL  104 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence            357889999   899999998888899999999876          344333322   2343222   233332122222


Q ss_pred             HHHhCC--CCccEEEcCCC
Q 043295           96 LKRYFP--DGIDVYFDNVG  112 (223)
Q Consensus        96 i~~~~~--~~~d~vid~~g  112 (223)
                      +.+...  +++|+++++.|
T Consensus       105 ~~~~~~~~g~iD~lv~nAg  123 (322)
T 3qlj_A          105 IQTAVETFGGLDVLVNNAG  123 (322)
T ss_dssp             HHHHHHHHSCCCEEECCCC
T ss_pred             HHHHHHHcCCCCEEEECCC
Confidence            222221  36999999887

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=95.94  E-value=0.019  Score=45.74  Aligned_cols=87  Identities=13%  Similarity=-0.039  Sum_probs=58.9

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .|++|.|.  |.+|...++.++..|.+|++.+++..+.+... ++|+...   .   ++.+.+.     ..|+|+.++..
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~-~~G~~~~---~---~l~ell~-----~aDvV~l~~Pl  257 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-ELNLTWH---A---TREDMYP-----VCDVVTLNCPL  257 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-HHTCEEC---S---SHHHHGG-----GCSEEEECSCC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHh-hcCceec---C---CHHHHHh-----cCCEEEEecCC
Confidence            56789999  99999999999999999999998765555555 6675321   1   2332222     26777776652


Q ss_pred             --H---HH-HHHHHhhccCcEEEEEcc
Q 043295          114 --E---ML-EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       114 --~---~~-~~~~~~l~~~G~~v~~g~  134 (223)
                        +   .+ ...+..|++++.++.++.
T Consensus       258 t~~t~~li~~~~l~~mk~gailIN~aR  284 (393)
T 2nac_A          258 HPETEHMINDETLKLFKRGAYIVNTAR  284 (393)
T ss_dssp             CTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             chHHHHHhhHHHHhhCCCCCEEEECCC
Confidence              1   12 345667777777777664

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=95.94  E-value=0.016  Score=45.66  Aligned_cols=87  Identities=10%  Similarity=0.019  Sum_probs=60.0

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCe-EEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCY-VVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~-v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      .|.+|.|.  |.+|...++.++..|.+ |++.+++..+.+... ++|+..+    .  ++.+.+.     ..|+|+.++.
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~-~~g~~~~----~--~l~ell~-----~aDvV~l~~P  230 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEE-KVGARRV----E--NIEELVA-----QADIVTVNAP  230 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHH-HTTEEEC----S--SHHHHHH-----TCSEEEECCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHH-hcCcEec----C--CHHHHHh-----cCCEEEECCC
Confidence            57799999  99999999999999997 999998775555555 6665321    1  3333332     2778877765


Q ss_pred             hH-----HH-HHHHHhhccCcEEEEEcc
Q 043295          113 GE-----ML-EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 ~~-----~~-~~~~~~l~~~G~~v~~g~  134 (223)
                      ..     .+ ...+..|++++.++.++.
T Consensus       231 ~t~~t~~li~~~~l~~mk~ga~lIn~ar  258 (364)
T 2j6i_A          231 LHAGTKGLINKELLSKFKKGAWLVNTAR  258 (364)
T ss_dssp             CSTTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred             CChHHHHHhCHHHHhhCCCCCEEEECCC
Confidence            31     12 345677788877777664

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=95.94  E-value=0.026  Score=43.56  Aligned_cols=78  Identities=18%  Similarity=0.233  Sum_probs=49.0

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC------------HHHHHHHHH---hhCCCee---eecCCcccHH
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT------------NEKVAILKE---KLGFDDA---FNYKEETDLK   93 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~------------~~~~~~~~~---~~g~~~~---~~~~~~~~~~   93 (223)
                      -.++++||+   +++|.+.++.....|++|+.++++            .++.+.+.+   ..|....   .|-.+.++..
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~  123 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ  123 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            457889999   899999999888999999998865            444433321   3343222   2433331233


Q ss_pred             HHHHHhCC--CCccEEEcCCC
Q 043295           94 ATLKRYFP--DGIDVYFDNVG  112 (223)
Q Consensus        94 ~~i~~~~~--~~~d~vid~~g  112 (223)
                      +.+.+...  +++|+++++.|
T Consensus       124 ~~~~~~~~~~g~iD~lVnnAg  144 (317)
T 3oec_A          124 AVVDEALAEFGHIDILVSNVG  144 (317)
T ss_dssp             HHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHcCCCCEEEECCC
Confidence            33332222  36999999887

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=95.93  E-value=0.028  Score=42.05  Aligned_cols=78  Identities=10%  Similarity=0.176  Sum_probs=48.5

Q ss_pred             hCCCEEEEE--C---chHHHHHHHHHHcCCeEEEEecCHHHHHHHH---HhhCCCee--eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS--G---AYGHLVGQYAKLGGCYVVGSAGTNEKVAILK---EKLGFDDA--FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~--g---~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~---~~~g~~~~--~~~~~~~~~~~~i~~~~~--~  102 (223)
                      .+++++||+  +   ++|.+.++.....|++|+.++++.+..+.++   ++.+....  .|-.+.++....+.+...  +
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   91 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWD   91 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            568899999  3   6899999888888999999998755433333   13343222  233333122222222211  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        92 ~id~lv~nAg  101 (271)
T 3ek2_A           92 SLDGLVHSIG  101 (271)
T ss_dssp             CEEEEEECCC
T ss_pred             CCCEEEECCc
Confidence            6999999886

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=95.93  E-value=0.032  Score=40.75  Aligned_cols=96  Identities=11%  Similarity=0.135  Sum_probs=62.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHhhCC-Ceeee-cCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEKLGF-DDAFN-YKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~~g~-~~~~~-~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++++||-. .|.|..+..+++..| .+|++++.+++..+.+++.... ..+.. ..+..+... .. ...+.+|+|+..
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~-~~~~~~D~v~~~  150 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQE-YA-NIVEKVDVIYED  150 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGG-GT-TTSCCEEEEEEC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCccc-cc-ccCccEEEEEEe
Confidence            678888888 777999999999987 5999999999888777632221 22211 111101000 00 111369999855


Q ss_pred             CCh----H-HHHHHHHhhccCcEEEEE
Q 043295          111 VGG----E-MLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       111 ~g~----~-~~~~~~~~l~~~G~~v~~  132 (223)
                      +..    . .+..+.+.|+++|.++..
T Consensus       151 ~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          151 VAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            432    2 377888899999999886

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.92  E-value=0.021  Score=43.43  Aligned_cols=91  Identities=12%  Similarity=0.075  Sum_probs=62.5

Q ss_pred             cccchhhHHHHHHHHh--hCCCEEEEE--C-chHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHH
Q 043295           19 AGTSGFTAYVGFYEIS--QKGEKVFVS--G-AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLK   93 (223)
Q Consensus        19 l~~~~~ta~~~l~~~~--~~g~~vlI~--g-~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   93 (223)
                      +||+.......|.+..  -.|.+++|.  | .+|.-+++++...|++|+...+..                    . ++.
T Consensus       145 ~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------------~-~L~  203 (301)
T 1a4i_A          145 IPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------------A-HLD  203 (301)
T ss_dssp             CCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------------S-SHH
T ss_pred             cCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc--------------------c-cHH
Confidence            4444444444454444  578999999  5 489999999999999988764221                    1 344


Q ss_pred             HHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           94 ATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        94 ~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      +.+++     .|+||.++|...+ -.-+.++++..++.+|...
T Consensus       204 ~~~~~-----ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~~  240 (301)
T 1a4i_A          204 EEVNK-----GDILVVATGQPEM-VKGEWIKPGAIVIDCGINY  240 (301)
T ss_dssp             HHHTT-----CSEEEECCCCTTC-BCGGGSCTTCEEEECCCBC
T ss_pred             HHhcc-----CCEEEECCCCccc-CCHHHcCCCcEEEEccCCC
Confidence            44433     8999999997533 2234578999999999753

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=95.92  E-value=0.065  Score=43.86  Aligned_cols=95  Identities=15%  Similarity=0.185  Sum_probs=64.8

Q ss_pred             CCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHH---hhCCCee-eecCCcccHHHHHHHhCCCCccEEE
Q 043295           36 KGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKE---KLGFDDA-FNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        36 ~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~---~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      ++++||=. .+.|..+.++|...+  .+|++++.++.+.+.+++   .+|...+ +-..+...+..    ...+.||.|+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~----~~~~~fD~Il  192 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA----AVPEMFDAIL  192 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH----HSTTCEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh----hccccCCEEE
Confidence            88998877 888999999999874  699999999998877763   3466433 21122112221    1234699887


Q ss_pred             c---CCCh--------------------------HHHHHHHHhhccCcEEEEEcc
Q 043295          109 D---NVGG--------------------------EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 d---~~g~--------------------------~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      -   |+|.                          ..+..++++|++||+++....
T Consensus       193 ~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          193 LDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             EECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            4   5542                          135567789999999987654

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=95.92  E-value=0.013  Score=43.84  Aligned_cols=77  Identities=13%  Similarity=0.178  Sum_probs=49.3

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcC---CeEEEEecCHHHHHHHHHhh---CCC-ee--eecCCcccHHHH---HHHh
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGG---CYVVGSAGTNEKVAILKEKL---GFD-DA--FNYKEETDLKAT---LKRY   99 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g---~~v~~~~~~~~~~~~~~~~~---g~~-~~--~~~~~~~~~~~~---i~~~   99 (223)
                      .+++++||+   |++|.+.++.+...|   ++|+.++++.++.+.+. ++   +.. ..  .|-.+.+.+.+.   +.+.
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~-~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE-DLAKNHSNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH-HHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHH-HhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence            457789999   899999998888889   99999998876544333 22   221 11  233333233333   3333


Q ss_pred             CCC-CccEEEcCCC
Q 043295          100 FPD-GIDVYFDNVG  112 (223)
Q Consensus       100 ~~~-~~d~vid~~g  112 (223)
                      .+. ++|++|.+.|
T Consensus        98 ~g~~~id~li~~Ag  111 (267)
T 1sny_A           98 TKDQGLNVLFNNAG  111 (267)
T ss_dssp             HGGGCCSEEEECCC
T ss_pred             cCCCCccEEEECCC
Confidence            332 5999999887

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=95.92  E-value=0.056  Score=40.98  Aligned_cols=89  Identities=12%  Similarity=-0.009  Sum_probs=58.2

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCC---CeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGF---DDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      -.+++++|.  |++|.+++..+...|+ +|+...++.++.+.+.++++.   ..+.+..+.          . .++|+|+
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l----------~-~~aDiII  192 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQL----------K-QSYDVII  192 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGC----------C-SCEEEEE
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHh----------c-CCCCEEE
Confidence            468899999  8999998888888997 999999999887666545543   122222211          1 3599999


Q ss_pred             cCCChHHHHH----HHHhhccCcEEEEEcc
Q 043295          109 DNVGGEMLEA----AVANMNLFGRVAACGV  134 (223)
Q Consensus       109 d~~g~~~~~~----~~~~l~~~G~~v~~g~  134 (223)
                      +|++......    ....++++..++.+..
T Consensus       193 naTp~gm~~~~~~l~~~~l~~~~~V~DlvY  222 (281)
T 3o8q_A          193 NSTSASLDGELPAIDPVIFSSRSVCYDMMY  222 (281)
T ss_dssp             ECSCCCC----CSCCGGGEEEEEEEEESCC
T ss_pred             EcCcCCCCCCCCCCCHHHhCcCCEEEEecC
Confidence            9987421111    1234566666666543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=95.91  E-value=0.047  Score=42.98  Aligned_cols=91  Identities=13%  Similarity=0.066  Sum_probs=62.1

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChH
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGE  114 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~  114 (223)
                      ..+|+|.  |.+|..+++.+.. ..+|...+++.++.+.++ +......+|..+.    +.+.+... +.|+|++|++..
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~-~~~~~~~~d~~d~----~~l~~~~~-~~DvVi~~~p~~   88 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK-EFATPLKVDASNF----DKLVEVMK-EFELVIGALPGF   88 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT-TTSEEEECCTTCH----HHHHHHHT-TCSEEEECCCGG
T ss_pred             ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh-ccCCcEEEecCCH----HHHHHHHh-CCCEEEEecCCc
Confidence            3479999  8899888876643 468888899998888877 4432333454443    22333322 489999999864


Q ss_pred             -HHHHHHHhhccCcEEEEEcc
Q 043295          115 -MLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       115 -~~~~~~~~l~~~G~~v~~g~  134 (223)
                       ....+-.|+..+-.++.++.
T Consensus        89 ~~~~v~~~~~~~g~~yvD~s~  109 (365)
T 3abi_A           89 LGFKSIKAAIKSKVDMVDVSF  109 (365)
T ss_dssp             GHHHHHHHHHHHTCEEEECCC
T ss_pred             ccchHHHHHHhcCcceEeeec
Confidence             45556667788888888764

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=95.91  E-value=0.0073  Score=45.45  Aligned_cols=73  Identities=18%  Similarity=0.175  Sum_probs=46.7

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-eeeecCCcccHHHHHHHhCC--CCccEEE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DAFNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      .+++++||+   +++|.+.++.....|++|+.+++++++..    . ... ...|-.+.++..+.+.+...  +++|+++
T Consensus        12 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~----~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv   86 (269)
T 3vtz_A           12 FTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV----N-VSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILV   86 (269)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT----T-SSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc----C-ceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            568899999   89999999988889999999998765421    1 111 11344443123333332221  3699999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        87 ~nAg   90 (269)
T 3vtz_A           87 NNAG   90 (269)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9887

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=95.90  E-value=0.033  Score=42.14  Aligned_cols=77  Identities=13%  Similarity=0.203  Sum_probs=47.7

Q ss_pred             CCCEEEEE--C---chHHHHHHHHHHcCCeEEEEecCHH---HHHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS--G---AYGHLVGQYAKLGGCYVVGSAGTNE---KVAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~--g---~vG~~a~qla~~~g~~v~~~~~~~~---~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .++++||+  +   ++|.+.++.....|++|+.++++++   ..+.+.+..+....  .|-.+.++..+.+.+...  ++
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGS   99 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999  3   7999999888888999999998875   33334323342122  243333122222222211  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus       100 iD~lv~~Ag  108 (285)
T 2p91_A          100 LDIIVHSIA  108 (285)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999886

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=95.90  E-value=0.017  Score=44.54  Aligned_cols=96  Identities=20%  Similarity=0.114  Sum_probs=64.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhC--------CCeeeecCCcccHHHHHHHhCCCCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLG--------FDDAFNYKEETDLKATLKRYFPDGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~i~~~~~~~~  104 (223)
                      .++.+||+. +|.|..+..+++.. +.+|++++.++.-.+.+++.+.        ...+ ..... +..+.+.. ..+.+
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v-~~~~~-D~~~~l~~-~~~~f  152 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRA-VLVID-DARAYLER-TEERY  152 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTE-EEEES-CHHHHHHH-CCCCE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCce-EEEEc-hHHHHHHh-cCCCc
Confidence            567899999 89999999999875 4599999999988888774331        1111 11111 33333333 33479


Q ss_pred             cEEEc-CC------C-------hHHHHHHHHhhccCcEEEEEc
Q 043295          105 DVYFD-NV------G-------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       105 d~vid-~~------g-------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+|+- ..      +       .+.+..+.++|+++|.++...
T Consensus       153 D~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            98873 22      1       235788889999999998753

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=95.89  E-value=0.024  Score=42.43  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=47.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH---HHHHHHHhh---CCCee---eecCCcccHHHHHHHhCC--
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE---KVAILKEKL---GFDDA---FNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~---~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~~--  101 (223)
                      .++++||+   +++|.+.++.....|++|+.++++..   +.+.+.+++   |....   .|-.+.++....+.+...  
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   89 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEF   89 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            57889999   89999999888889999999876533   333333232   33211   243333122222322221  


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|+++++.|
T Consensus        90 g~iD~lvnnAg  100 (262)
T 3ksu_A           90 GKVDIAINTVG  100 (262)
T ss_dssp             CSEEEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36999999887

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.89  E-value=0.031  Score=42.05  Aligned_cols=77  Identities=14%  Similarity=0.141  Sum_probs=48.1

Q ss_pred             CCCEEEEE--C---chHHHHHHHHHHcCCeEEEEecCHH---HHHHHHHhhCCCee--eecCCcccHHHHHHHhC--CCC
Q 043295           36 KGEKVFVS--G---AYGHLVGQYAKLGGCYVVGSAGTNE---KVAILKEKLGFDDA--FNYKEETDLKATLKRYF--PDG  103 (223)
Q Consensus        36 ~g~~vlI~--g---~vG~~a~qla~~~g~~v~~~~~~~~---~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~--~~~  103 (223)
                      .+++++|+  +   ++|.+.++.....|++|+.++++++   ..+.+.++.+....  .|-.+.++..+.+.+..  -++
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   84 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999  3   7899999888888999999998865   34444423342122  24443312222222221  136


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        85 id~lv~nAg   93 (275)
T 2pd4_A           85 LDFIVHSVA   93 (275)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999886

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.88  E-value=0.018  Score=42.93  Aligned_cols=77  Identities=12%  Similarity=0.148  Sum_probs=47.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHH----HHHhhCCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAI----LKEKLGFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~----~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .++++||+   |++|.+.++.....|++|+.++++..+.+.    +.++.+....   .|..+.+++.+.+.+...  ++
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   92 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   92 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            46789999   899999998888889999999986443322    2212343211   243433123333332211  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++.+.|
T Consensus        93 id~li~~Ag  101 (265)
T 1h5q_A           93 ISGLIANAG  101 (265)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999886

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=95.87  E-value=0.047  Score=40.55  Aligned_cols=95  Identities=16%  Similarity=0.028  Sum_probs=63.5

Q ss_pred             CCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHH--hCCCCccEEE
Q 043295           36 KGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKR--YFPDGIDVYF  108 (223)
Q Consensus        36 ~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~--~~~~~~d~vi  108 (223)
                      ++.+||=. +|.|..++.+++.. +.+|++++.+++..+.+++   .+|...+- .... +.. .+..  ...+.||+|+
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~-~~~~-d~~-~~~~~~~~~~~fD~I~  156 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGAR-ALWG-RAE-VLAREAGHREAYARAV  156 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEE-EEEC-CHH-HHTTSTTTTTCEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceE-EEEC-cHH-HhhcccccCCCceEEE
Confidence            56787777 78898888999876 5699999999998877763   34654331 1111 222 2211  1123799998


Q ss_pred             cCCCh---HHHHHHHHhhccCcEEEEEc
Q 043295          109 DNVGG---EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       109 d~~g~---~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ...-.   ..+..+.++|++||+++.+-
T Consensus       157 s~a~~~~~~ll~~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          157 ARAVAPLCVLSELLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             EESSCCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ECCcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence            64332   35677888999999998764

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=95.87  E-value=0.05  Score=42.34  Aligned_cols=85  Identities=16%  Similarity=0.141  Sum_probs=59.9

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .+.+|.|.  |.+|...++.++..|.+|++.+++.++ +... ++|...    .   ++.+.+.+     .|+|+.++..
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-~~g~~~----~---~l~~~l~~-----aDvVil~vp~  214 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVER-ELNAEF----K---PLEDLLRE-----SDFVVLAVPL  214 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-HHCCEE----C---CHHHHHHH-----CSEEEECCCC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHh-hcCccc----C---CHHHHHhh-----CCEEEECCCC
Confidence            45689999  999999999999999999999988776 5555 666521    1   33333332     7888887763


Q ss_pred             -H----HH-HHHHHhhccCcEEEEEcc
Q 043295          114 -E----ML-EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       114 -~----~~-~~~~~~l~~~G~~v~~g~  134 (223)
                       .    .+ ...+..++++..++.++.
T Consensus       215 ~~~t~~~i~~~~~~~mk~~ailIn~sr  241 (334)
T 2dbq_A          215 TRETYHLINEERLKLMKKTAILINIAR  241 (334)
T ss_dssp             CTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             ChHHHHhhCHHHHhcCCCCcEEEECCC
Confidence             2    12 345677888888877663

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=95.85  E-value=0.02  Score=48.47  Aligned_cols=78  Identities=18%  Similarity=0.239  Sum_probs=44.9

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEec---------CHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHh
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG---------TNEKVAILKE---KLGFDDAFNYKEETDLKATLKRY   99 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~---------~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~   99 (223)
                      -.|+++||+   +++|.+.++.....|++|+.+++         +.++.+.+.+   ..+...+.|..+..+..+.+.+.
T Consensus        17 l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~   96 (613)
T 3oml_A           17 YDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETA   96 (613)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC--
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Confidence            357889999   89999999888889999999876         4433333321   34555555655542444444444


Q ss_pred             CCC--CccEEEcCCC
Q 043295          100 FPD--GIDVYFDNVG  112 (223)
Q Consensus       100 ~~~--~~d~vid~~g  112 (223)
                      ...  ++|+++++.|
T Consensus        97 ~~~~g~iDiLVnnAG  111 (613)
T 3oml_A           97 IKAFGRVDILVNNAG  111 (613)
T ss_dssp             --------CEECCCC
T ss_pred             HHHCCCCcEEEECCC
Confidence            332  6999999887

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=95.85  E-value=0.02  Score=42.36  Aligned_cols=77  Identities=22%  Similarity=0.306  Sum_probs=47.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEec-CHHHHHHHHH---hhCCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAG-TNEKVAILKE---KLGFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~-~~~~~~~~~~---~~g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .++++||+   |++|.+.++.....|++|+.+++ +.++.+.+.+   ..|....   .|-.+.++..+.+.+...  ++
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS   82 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            36788999   89999999988899999988876 4455444332   2343222   233333122222332221  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        83 id~lv~nAg   91 (246)
T 3osu_A           83 LDVLVNNAG   91 (246)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999887

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=95.85  E-value=0.11  Score=36.31  Aligned_cols=92  Identities=15%  Similarity=0.088  Sum_probs=62.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcC-C-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN-V-  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~-~-  111 (223)
                      .++.+||-. .+.|..+..+++. |.++++++.++...+.+++.+..-.++..+-. ++     ....+.+|+|+.. . 
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~-~~-----~~~~~~~D~i~~~~~~  117 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFPEARWVVGDLS-VD-----QISETDFDLIVSAGNV  117 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCTTSEEEECCTT-TS-----CCCCCCEEEEEECCCC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccc-cC-----CCCCCceeEEEECCcH
Confidence            778899888 7889988888887 88999999999988888833322222221111 11     0112379999864 1 


Q ss_pred             -C-------hHHHHHHHHhhccCcEEEEEc
Q 043295          112 -G-------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 -g-------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                       .       ...+..+.+.|+++|.++...
T Consensus       118 ~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A          118 MGFLAEDGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence             1       124667788999999988753

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.84  E-value=0.027  Score=42.57  Aligned_cols=92  Identities=13%  Similarity=0.062  Sum_probs=64.2

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE--C-chHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS--G-AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~--g-~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      .+||+.......|....  -.|.+++|.  | .+|.-+++++...|++|+...+..                    . ++
T Consensus       138 ~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------------~-~L  196 (288)
T 1b0a_A          138 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------------K-NL  196 (288)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------------S-CH
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------------h-hH
Confidence            34544444555555555  688999999  5 479999999999999988875221                    1 45


Q ss_pred             HHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      .+.+++     .|+||.++|...+ -.-+.++++..++.+|...
T Consensus       197 ~~~~~~-----ADIVI~Avg~p~l-I~~~~vk~GavVIDVgi~r  234 (288)
T 1b0a_A          197 RHHVEN-----ADLLIVAVGKPGF-IPGDWIKEGAIVIDVGINR  234 (288)
T ss_dssp             HHHHHH-----CSEEEECSCCTTC-BCTTTSCTTCEEEECCCEE
T ss_pred             HHHhcc-----CCEEEECCCCcCc-CCHHHcCCCcEEEEccCCc
Confidence            555544     8999999997542 2223468999999998764

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=95.81  E-value=0.014  Score=43.86  Aligned_cols=70  Identities=14%  Similarity=0.232  Sum_probs=46.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC--eeeecCCccc---HHHHHHHhCCCCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD--DAFNYKEETD---LKATLKRYFPDGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~---~~~~i~~~~~~~~d~v  107 (223)
                      +|+++||+   +++|.+.++.....|++|+.++++..+      .+...  ...|-.+.++   +.+.+.+.. |++|++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~------~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-G~iDil   82 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPE------GLPEELFVEADLTTKEGCAIVAEATRQRL-GGVDVI   82 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCT------TSCTTTEEECCTTSHHHHHHHHHHHHHHT-SSCSEE
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchh------CCCcEEEEEcCCCCHHHHHHHHHHHHHHc-CCCCEE
Confidence            68899999   799999999999999999999987542      11111  1123333312   223333333 369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        83 VnnAG   87 (261)
T 4h15_A           83 VHMLG   87 (261)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            98765

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.80  E-value=0.08  Score=43.18  Aligned_cols=94  Identities=14%  Similarity=0.116  Sum_probs=59.5

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCe-eeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDD-AFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      -++.+|+|.  |++|.+++..+... |.+|++.+++.++.+.+.+..+... .+|..+.+++.+.+.     ++|+|++|
T Consensus        21 l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~-----~~DvVIn~   95 (467)
T 2axq_A           21 HMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLA-----DNDVVISL   95 (467)
T ss_dssp             --CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHH-----TSSEEEEC
T ss_pred             CCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHc-----CCCEEEEC
Confidence            356789999  99999998887777 6799999999888776652334322 233333212222222     49999999


Q ss_pred             CChH-HHHHHHHhhccCcEEEEEc
Q 043295          111 VGGE-MLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       111 ~g~~-~~~~~~~~l~~~G~~v~~g  133 (223)
                      ++.. .......++.++..++...
T Consensus        96 tp~~~~~~v~~a~l~~g~~vvd~~  119 (467)
T 2axq_A           96 IPYTFHPNVVKSAIRTKTDVVTSS  119 (467)
T ss_dssp             SCGGGHHHHHHHHHHHTCEEEECS
T ss_pred             CchhhhHHHHHHHHhcCCEEEEee
Confidence            9853 3333445666666666553

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.79  E-value=0.046  Score=39.56  Aligned_cols=92  Identities=14%  Similarity=0.095  Sum_probs=56.2

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .+|||+   |.+|..+++.+...|.+|+++++++.+.+.+.  -+...+ .|..+.    +.+.+... ++|+||.+.|.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~Dl~d~----~~~~~~~~-~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN--EHLKVKKADVSSL----DEVCEVCK-GADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC--TTEEEECCCTTCH----HHHHHHHT-TCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc--CceEEEEecCCCH----HHHHHHhc-CCCEEEEeCcC
Confidence            579999   88999999888888999999999877643221  111111 233332    22333332 49999999874


Q ss_pred             H------------HHHHHHHhhccC--cEEEEEcccc
Q 043295          114 E------------MLEAAVANMNLF--GRVAACGVIS  136 (223)
Q Consensus       114 ~------------~~~~~~~~l~~~--G~~v~~g~~~  136 (223)
                      .            .....++.+...  ++++.++...
T Consensus        78 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~  114 (227)
T 3dhn_A           78 GWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG  114 (227)
T ss_dssp             ------CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence            2            122334444433  4888887643

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.79  E-value=0.14  Score=39.49  Aligned_cols=86  Identities=15%  Similarity=0.127  Sum_probs=56.3

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh-
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG-  113 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~-  113 (223)
                      ..+|.|.  |.+|...++.+...|.+|++.++++++.+.+. +.|+...   .   +..+.+.     ..|+||-|+.. 
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~~~---~---~~~e~~~-----~aDvVi~~vp~~   98 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLA-ALGATIH---E---QARAAAR-----DADIVVSMLENG   98 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-TTTCEEE---S---SHHHHHT-----TCSEEEECCSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-HCCCEee---C---CHHHHHh-----cCCEEEEECCCH
Confidence            4588888  99999999988889999999999999988887 5565221   1   2333222     26777777764 


Q ss_pred             HHHHHHH------HhhccCcEEEEEcc
Q 043295          114 EMLEAAV------ANMNLFGRVAACGV  134 (223)
Q Consensus       114 ~~~~~~~------~~l~~~G~~v~~g~  134 (223)
                      ......+      ..+.++..++.++.
T Consensus        99 ~~~~~v~~~~~~~~~l~~~~~vi~~st  125 (320)
T 4dll_A           99 AVVQDVLFAQGVAAAMKPGSLFLDMAS  125 (320)
T ss_dssp             HHHHHHHTTTCHHHHCCTTCEEEECSC
T ss_pred             HHHHHHHcchhHHhhCCCCCEEEecCC
Confidence            2333332      24455555555543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=95.79  E-value=0.16  Score=36.73  Aligned_cols=98  Identities=12%  Similarity=0.035  Sum_probs=65.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCC-CCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFP-DGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~-~~~d~vi  108 (223)
                      .++..||=. .|.|..+..+|+.. +.+|++++.++...+.+++   ..|.+.+ ..-.. +..+.+..... +.+|.|+
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv-~~~~~-Da~~~l~~~~~~~~~d~v~  110 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNL-RVMCH-DAVEVLHKMIPDNSLRMVQ  110 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSE-EEECS-CHHHHHHHHSCTTCEEEEE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcE-EEEEC-CHHHHHHHHcCCCChheEE
Confidence            466777766 88999999999877 5699999999987777653   2454433 22222 44444444333 3788776


Q ss_pred             cCCC---------------hHHHHHHHHhhccCcEEEEEcc
Q 043295          109 DNVG---------------GEMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 d~~g---------------~~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      -...               ...+..+.+.|+|||.++....
T Consensus       111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td  151 (218)
T 3dxy_A          111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD  151 (218)
T ss_dssp             EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence            4311               1267788889999999887653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=95.78  E-value=0.1  Score=37.54  Aligned_cols=91  Identities=19%  Similarity=0.122  Sum_probs=62.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhC-CCeeeecCCcccHHHHHHHhCCCCccEEEcCC-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG-FDDAFNYKEETDLKATLKRYFPDGIDVYFDNV-  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~-  111 (223)
                      .++.+||-. +|.|..+..+++. |.++++++.++...+.+++.+. --.++..+-. ++.      ..+.+|+|+... 
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~-~~~------~~~~fD~v~~~~~  115 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFL-SFE------VPTSIDTIVSTYA  115 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSS-SCC------CCSCCSEEEEESC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChh-hcC------CCCCeEEEEECcc
Confidence            788899888 8889998888887 8899999999998888884443 1111111111 110      013689887543 


Q ss_pred             ----ChH----HHHHHHHhhccCcEEEEEc
Q 043295          112 ----GGE----MLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 ----g~~----~~~~~~~~l~~~G~~v~~g  133 (223)
                          ...    .+..+.+.|++||.++...
T Consensus       116 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          116 FHHLTDDEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             GGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhcCChHHHHHHHHHHHHhcCCCCEEEEEe
Confidence                221    5678888999999998874

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=95.78  E-value=0.012  Score=42.90  Aligned_cols=95  Identities=15%  Similarity=0.077  Sum_probs=63.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHh---hC-----CCee-eecCCcccHHHHHHHhCCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEK---LG-----FDDA-FNYKEETDLKATLKRYFPD  102 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~---~g-----~~~~-~~~~~~~~~~~~i~~~~~~  102 (223)
                      +++++||-. .+.|..+..+++..|  .+|++++.++...+.+++.   .|     .+.+ +...+   .....  ...+
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d---~~~~~--~~~~  150 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD---GRMGY--AEEA  150 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC---GGGCC--GGGC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECC---cccCc--ccCC
Confidence            678899988 778999999999876  5999999999888777632   22     1122 11111   11000  1123


Q ss_pred             CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcc
Q 043295          103 GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       103 ~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .||+|+..... ..+..+.+.|+++|+++..-.
T Consensus       151 ~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          151 PYDAIHVGAAAPVVPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             CEEEEEECSBBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             CcCEEEECCchHHHHHHHHHhcCCCcEEEEEEe
Confidence            69999866553 456778899999999987643

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.77  E-value=0.038  Score=42.96  Aligned_cols=85  Identities=9%  Similarity=-0.017  Sum_probs=58.1

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChH
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGE  114 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~  114 (223)
                      |.+|.|.  |.+|...++.++..|.+|++.+++.++.+... ++|....       ++.+.+.+     .|+|+.++...
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~-------~l~e~l~~-----aDvVi~~vp~~  221 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA-EFQAEFV-------STPELAAQ-----SDFIVVACSLT  221 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH-TTTCEEC-------CHHHHHHH-----CSEEEECCCCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHH-hcCceeC-------CHHHHHhh-----CCEEEEeCCCC
Confidence            5689888  99999999999999999999998766555555 5654321       22233322     78888877531


Q ss_pred             -----HH-HHHHHhhccCcEEEEEcc
Q 043295          115 -----ML-EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       115 -----~~-~~~~~~l~~~G~~v~~g~  134 (223)
                           .+ ...+..++++..++.++.
T Consensus       222 ~~t~~~i~~~~~~~mk~gailIn~sr  247 (330)
T 2gcg_A          222 PATEGLCNKDFFQKMKETAVFINISR  247 (330)
T ss_dssp             TTTTTCBSHHHHHHSCTTCEEEECSC
T ss_pred             hHHHHhhCHHHHhcCCCCcEEEECCC
Confidence                 12 345667788777776654

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.77  E-value=0.24  Score=38.38  Aligned_cols=72  Identities=14%  Similarity=0.112  Sum_probs=47.6

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH----HHHHHHHHhh-------CCCee-eecCCcccHHHHHHHh
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN----EKVAILKEKL-------GFDDA-FNYKEETDLKATLKRY   99 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~----~~~~~~~~~~-------g~~~~-~~~~~~~~~~~~i~~~   99 (223)
                      ..+.+|||+   |.+|..+++.+...|.+|++++++.    ...+.+. ..       +...+ .|..+.    +.+.+.
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~----~~~~~~   97 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVK-TLVSTEQWSRFCFIEGDIRDL----TTCEQV   97 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHH-HTSCHHHHTTEEEEECCTTCH----HHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhh-hccccccCCceEEEEccCCCH----HHHHHH
Confidence            567899999   8899999988888899999999854    3334333 22       22111 233322    234444


Q ss_pred             CCCCccEEEcCCC
Q 043295          100 FPDGIDVYFDNVG  112 (223)
Q Consensus       100 ~~~~~d~vid~~g  112 (223)
                      .. ++|+||.+.+
T Consensus        98 ~~-~~d~Vih~A~  109 (351)
T 3ruf_A           98 MK-GVDHVLHQAA  109 (351)
T ss_dssp             TT-TCSEEEECCC
T ss_pred             hc-CCCEEEECCc
Confidence            43 6999999987

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=95.76  E-value=0.18  Score=37.85  Aligned_cols=98  Identities=14%  Similarity=0.157  Sum_probs=64.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-C-CeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHh--CCCCccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-G-CYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRY--FPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g-~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~--~~~~~d~  106 (223)
                      +++++||=. .+.|..+.+++... + .+|++++.++.+.+.+++.   +|...+--...  +..+.....  ..+.||.
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~--D~~~~~~~~~~~~~~fD~  159 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINA--DMRKYKDYLLKNEIFFDK  159 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES--CHHHHHHHHHHTTCCEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeC--ChHhcchhhhhccccCCE
Confidence            788888777 78899999999875 5 6999999999988877632   45533211111  222221111  1336998


Q ss_pred             EE-c--CCC----------------------hHHHHHHHHhhccCcEEEEEcc
Q 043295          107 YF-D--NVG----------------------GEMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       107 vi-d--~~g----------------------~~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      |+ |  |+|                      ...+..+++.|++||+++....
T Consensus       160 Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          160 ILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             EEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence            86 3  443                      1346778889999999987654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=95.75  E-value=0.12  Score=36.99  Aligned_cols=96  Identities=15%  Similarity=0.042  Sum_probs=59.9

Q ss_pred             hCCCEEEEECchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCC---Cee-eecCCc---------------c--
Q 043295           35 QKGEKVFVSGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGF---DDA-FNYKEE---------------T--   90 (223)
Q Consensus        35 ~~g~~vlI~g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~---~~~-~~~~~~---------------~--   90 (223)
                      .+.++||-+|. |..++.+|+..+.+|+++..+++..+.+++   ..|.   +.+ +-..+.               +  
T Consensus        29 ~~a~~VLEiGt-GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           29 EEAEVILEYGS-GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HHCSEEEEESC-SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             hCCCEEEEECc-hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            66788888754 778888888547899999999988777663   3353   233 111110               0  


Q ss_pred             -cHHHHHHHhCC-CCccEEE-cCCCh-HHHHHHHHhhccCcEEEE
Q 043295           91 -DLKATLKRYFP-DGIDVYF-DNVGG-EMLEAAVANMNLFGRVAA  131 (223)
Q Consensus        91 -~~~~~i~~~~~-~~~d~vi-d~~g~-~~~~~~~~~l~~~G~~v~  131 (223)
                       .+...+.+... +.||+|| |.--. ..+..++.+|++||.++.
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLF  152 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEE
T ss_pred             HHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEE
Confidence             12222222222 3799986 65422 567778899999998843

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=95.75  E-value=0.17  Score=38.37  Aligned_cols=103  Identities=16%  Similarity=0.044  Sum_probs=66.4

Q ss_pred             HHHHHh-hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHhh----C-CCee--eecCCcccHHHHHH
Q 043295           29 GFYEIS-QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEKL----G-FDDA--FNYKEETDLKATLK   97 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~~----g-~~~~--~~~~~~~~~~~~i~   97 (223)
                      .+.... .++.+||=. .|.|..+..+++..  +.+|++++.++...+.+++.+    + ...+  +..+-. ++.  ..
T Consensus        28 ~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~-~~~--~~  104 (299)
T 3g5t_A           28 MIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD-DFK--FL  104 (299)
T ss_dssp             HHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT-CCG--GG
T ss_pred             HHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH-hCC--cc
Confidence            343333 688899888 88999999999864  679999999999888887321    1 1121  111111 110  00


Q ss_pred             H---hCCCCccEEEcCCC------hHHHHHHHHhhccCcEEEEEcc
Q 043295           98 R---YFPDGIDVYFDNVG------GEMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus        98 ~---~~~~~~d~vid~~g------~~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .   ...+.+|+|+....      ...+..+.++|++||.++....
T Consensus       105 ~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~~~  150 (299)
T 3g5t_A          105 GADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIWGY  150 (299)
T ss_dssp             CTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEEec
Confidence            0   01146999976433      2467888899999999987543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.75  E-value=0.034  Score=40.14  Aligned_cols=93  Identities=14%  Similarity=0.144  Sum_probs=57.6

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChH-
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGE-  114 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~-  114 (223)
                      +|||+   |.+|...++.+...|++|+++++++++.+..   .+. .++..+-. +..+.+.+... ++|+||.+.|.. 
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~~~-~~~~~D~~-d~~~~~~~~~~-~~d~vi~~ag~~~   75 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY---NNV-KAVHFDVD-WTPEEMAKQLH-GMDAIINVSGSGG   75 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC---TTE-EEEECCTT-SCHHHHHTTTT-TCSEEEECCCCTT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc---CCc-eEEEeccc-CCHHHHHHHHc-CCCEEEECCcCCC
Confidence            68888   8999999988888899999999987654321   121 22211111 21334444443 599999999842 


Q ss_pred             ---------HHHHHHHhhcc-C-cEEEEEccccc
Q 043295          115 ---------MLEAAVANMNL-F-GRVAACGVISE  137 (223)
Q Consensus       115 ---------~~~~~~~~l~~-~-G~~v~~g~~~~  137 (223)
                               .....++.+.. + ++++.++....
T Consensus        76 ~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  109 (219)
T 3dqp_A           76 KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFS  109 (219)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence                     12334444433 2 58888876544

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=95.73  E-value=0.082  Score=37.79  Aligned_cols=90  Identities=18%  Similarity=0.107  Sum_probs=63.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC--
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV--  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~--  111 (223)
                      .++.+||-. +|.|..+..+++. |.+|++++.++...+.+++.++..... .+-. .+    .  ..+.+|+|+...  
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~d~~-~~----~--~~~~fD~v~~~~~l  112 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRLGRPVRT-MLFH-QL----D--AIDAYDAVWAHACL  112 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTSCCEE-CCGG-GC----C--CCSCEEEEEECSCG
T ss_pred             CCCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhcCCceEE-eeec-cC----C--CCCcEEEEEecCch
Confidence            677888888 8889998888877 889999999999888888544543221 1111 11    1  223799998643  


Q ss_pred             ---C--h--HHHHHHHHhhccCcEEEEEc
Q 043295          112 ---G--G--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 ---g--~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                         .  .  ..+..+.+.|+++|.++...
T Consensus       113 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  141 (211)
T 3e23_A          113 LHVPRDELADVLKLIWRALKPGGLFYASY  141 (211)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence               2  1  25677888999999998764

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=95.72  E-value=0.017  Score=43.40  Aligned_cols=103  Identities=15%  Similarity=0.188  Sum_probs=60.8

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEe-cCHHHHHHHHH---hhCCCee---eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSA-GTNEKVAILKE---KLGFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~-~~~~~~~~~~~---~~g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      ..++++||+   +++|.+.++.....|++|+.++ ++.++.+.+.+   ..|....   .|-.+.++..+.+.+...  +
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  104 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG  104 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467899999   8999999988888899998874 44444443332   2343221   244443122222222221  3


Q ss_pred             CccEEEcCCCh-----------HHH---------------HHHHHhhccCcEEEEEccccc
Q 043295          103 GIDVYFDNVGG-----------EML---------------EAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       103 ~~d~vid~~g~-----------~~~---------------~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      ++|+++++.|-           +.+               +.++..++.+|+++.++....
T Consensus       105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~  165 (267)
T 3u5t_A          105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQV  165 (267)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHH
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhh
Confidence            69999998872           111               233445566799998876443

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.72  E-value=0.019  Score=43.28  Aligned_cols=78  Identities=22%  Similarity=0.264  Sum_probs=49.1

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCe-e--eecCCcccHHHHHHHhCC--CC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDD-A--FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~-~--~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      -.++++||+   |++|...+......|++|+.+++++++.+.+.+   ..+... .  .|-.+.+++.+.+.+...  ++
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  111 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGT  111 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            457889999   899999998888889999999988765443331   234321 1  233333123333322211  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|++|++.|
T Consensus       112 id~li~~Ag  120 (279)
T 3ctm_A          112 IDVFVANAG  120 (279)
T ss_dssp             CSEEEECGG
T ss_pred             CCEEEECCc
Confidence            999999876

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=95.72  E-value=0.045  Score=41.93  Aligned_cols=97  Identities=11%  Similarity=0.067  Sum_probs=61.7

Q ss_pred             CCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCC---------e-eeecCCcccHHHHHHHhCC
Q 043295           36 KGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFD---------D-AFNYKEETDLKATLKRYFP  101 (223)
Q Consensus        36 ~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~---------~-~~~~~~~~~~~~~i~~~~~  101 (223)
                      ++.+||-. .|.|..+..+++..+.+|++++.++.-++.+++.   .+..         . +.+.... .+...+.+...
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d-~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSD-TFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSS-SHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccc-hhhhhhhcccc
Confidence            47888888 6677666666766667999999999988888743   2321         0 1111111 34445544333


Q ss_pred             -CCccEEEcCC---------C-hHHHHHHHHhhccCcEEEEEc
Q 043295          102 -DGIDVYFDNV---------G-GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       102 -~~~d~vid~~---------g-~~~~~~~~~~l~~~G~~v~~g  133 (223)
                       +.||+|+...         . ...+..+.++|+|||.++...
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~  169 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITT  169 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence             3799997421         1 235778889999999997654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=95.72  E-value=0.013  Score=42.72  Aligned_cols=93  Identities=19%  Similarity=0.168  Sum_probs=62.1

Q ss_pred             hCCCEEEEE-Cc-hHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCC-CeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GA-YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGF-DDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~-vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~-~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      +++.+||=. .| .|..+..+++..+.+|++++.++...+.+++.   .|. -.++..+-. .    .....++.+|+|+
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~----~~~~~~~~fD~I~  128 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG-I----IKGVVEGTFDVIF  128 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSC-S----STTTCCSCEEEEE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCch-h----hhhcccCceeEEE
Confidence            788898888 77 99999999988788999999999887777632   343 122221110 0    1112224799998


Q ss_pred             cCC----------------------C----hHHHHHHHHhhccCcEEEEE
Q 043295          109 DNV----------------------G----GEMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       109 d~~----------------------g----~~~~~~~~~~l~~~G~~v~~  132 (223)
                      -..                      +    ...+..+.+.|+++|+++.+
T Consensus       129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            431                      1    23466777889999998875

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.70  E-value=0.032  Score=40.62  Aligned_cols=93  Identities=14%  Similarity=-0.015  Sum_probs=62.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC---eeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD---DAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||-. .|.|..+..+++.. .+|++++.++...+.+++.+...   .++..    +..+...  ..+.+|+|+..
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~----d~~~~~~--~~~~fD~v~~~  141 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILG----DGTLGYE--EEKPYDRVVVW  141 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEES----CGGGCCG--GGCCEEEEEES
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEEC----Ccccccc--cCCCccEEEEC
Confidence            788899988 77899999988874 89999999999888888443211   11111    1111010  12369999865


Q ss_pred             CCh-HHHHHHHHhhccCcEEEEEcc
Q 043295          111 VGG-EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       111 ~g~-~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      ..- .......+.|+++|+++....
T Consensus       142 ~~~~~~~~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          142 ATAPTLLCKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             SBBSSCCHHHHHTEEEEEEEEEEEC
T ss_pred             CcHHHHHHHHHHHcCCCcEEEEEEc
Confidence            543 234567889999999987743

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=95.70  E-value=0.034  Score=41.73  Aligned_cols=78  Identities=19%  Similarity=0.164  Sum_probs=48.7

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEE-ecCHHHHHHHHHh---hCCCee---eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGS-AGTNEKVAILKEK---LGFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~-~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      .+++++||+   |++|.+.++.....|++|+.+ .++.++.+.+.++   .+....   .|-.+.++..+.+.+...  +
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  103 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFG  103 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            567889999   899999999988999999776 6666665544322   233211   233333123222322221  2


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|++|.+.|
T Consensus       104 ~id~li~nAg  113 (272)
T 4e3z_A          104 RLDGLVNNAG  113 (272)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999876

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=95.70  E-value=0.026  Score=43.56  Aligned_cols=96  Identities=23%  Similarity=0.204  Sum_probs=63.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      +++++||-. .|.|..+..+++..+  .+|++++.+++..+.+++.   .|...+ ..... +..+...  ..+.+|+|+
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v-~~~~~-d~~~~~~--~~~~fD~Iv  149 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENV-IFVCG-DGYYGVP--EFSPYDVIF  149 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEES-CGGGCCG--GGCCEEEEE
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCe-EEEEC-Chhhccc--cCCCeEEEE
Confidence            789999999 777999999998754  4799999999988877732   244332 11111 1111111  113699998


Q ss_pred             cCCChH-HHHHHHHhhccCcEEEEEcc
Q 043295          109 DNVGGE-MLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 d~~g~~-~~~~~~~~l~~~G~~v~~g~  134 (223)
                      ....-. ....+.+.|+|+|+++..-.
T Consensus       150 ~~~~~~~~~~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          150 VTVGVDEVPETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             ECSBBSCCCHHHHHHEEEEEEEEEEBC
T ss_pred             EcCCHHHHHHHHHHhcCCCcEEEEEEC
Confidence            765532 23567789999999887643

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=95.69  E-value=0.11  Score=39.34  Aligned_cols=41  Identities=22%  Similarity=0.169  Sum_probs=35.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHH
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILK   75 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~   75 (223)
                      .++.+||=. .+.|..+..+++..+ .+|++++.++.-.+.++
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~   87 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSAR   87 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHH
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            367898888 889999999999874 69999999998888777

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=95.69  E-value=0.2  Score=35.09  Aligned_cols=98  Identities=14%  Similarity=0.087  Sum_probs=61.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||=. .|.|..+..+++.-..+|++++.+++..+.+++.   .+.+.+ ..... +..+.......+.+|+|+-.
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~~-d~~~~~~~~~~~~fD~i~~~  120 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGA-TLRRG-AVAAVVAAGTTSPVDLVLAD  120 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCE-EEEES-CHHHHHHHCCSSCCSEEEEC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCce-EEEEc-cHHHHHhhccCCCccEEEEC
Confidence            477888877 7889888877775334899999999887777632   344222 11112 34433333323479998753


Q ss_pred             C---C--h---HHHHHHHH--hhccCcEEEEEcc
Q 043295          111 V---G--G---EMLEAAVA--NMNLFGRVAACGV  134 (223)
Q Consensus       111 ~---g--~---~~~~~~~~--~l~~~G~~v~~g~  134 (223)
                      .   .  .   ..+....+  .|+++|.++.-..
T Consensus       121 ~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~  154 (189)
T 3p9n_A          121 PPYNVDSADVDAILAALGTNGWTREGTVAVVERA  154 (189)
T ss_dssp             CCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred             CCCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence            2   2  1   24555666  8999999987543

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=95.69  E-value=0.053  Score=42.43  Aligned_cols=88  Identities=20%  Similarity=0.145  Sum_probs=58.6

Q ss_pred             hCCCEEEEE--CchHHHHHHHHH-HcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAK-LGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~-~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      -.|.+|.|.  |.+|...++.++ ..|.+|++.+++.++.+... ++|...+    .  ++.+.+.+     .|+|+.++
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~-~~g~~~~----~--~l~ell~~-----aDvVil~v  228 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEK-ALGAERV----D--SLEELARR-----SDCVSVSV  228 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHH-HHTCEEC----S--SHHHHHHH-----CSEEEECC
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHh-hcCcEEe----C--CHHHHhcc-----CCEEEEeC
Confidence            457789999  999999999999 99999999998876655555 5665322    1  23333332     67777766


Q ss_pred             Ch-H----HH-HHHHHhhccCcEEEEEcc
Q 043295          112 GG-E----ML-EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       112 g~-~----~~-~~~~~~l~~~G~~v~~g~  134 (223)
                      .. .    .+ ...+..++++..++.++.
T Consensus       229 p~~~~t~~li~~~~l~~mk~gailin~sr  257 (348)
T 2w2k_A          229 PYMKLTHHLIDEAFFAAMKPGSRIVNTAR  257 (348)
T ss_dssp             CCSGGGTTCBCHHHHHHSCTTEEEEECSC
T ss_pred             CCChHHHHHhhHHHHhcCCCCCEEEECCC
Confidence            52 1    11 245566777776666554

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=95.69  E-value=0.14  Score=35.68  Aligned_cols=94  Identities=13%  Similarity=0.071  Sum_probs=63.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCe--e-eecCCcccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDD--A-FNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~--~-~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      .++.+||-. .|.|..+..+++. +.++++++.++...+.+++.+   +...  + +...   ++.+.   ...+.+|+|
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~---d~~~~---~~~~~~D~v  123 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS---DLYEN---VKDRKYNKI  123 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC---STTTT---CTTSCEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC---chhcc---cccCCceEE
Confidence            688898888 7889999998888 889999999998887776332   4332  2 1111   11111   112379999


Q ss_pred             EcCCC----h----HHHHHHHHhhccCcEEEEEccc
Q 043295          108 FDNVG----G----EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       108 id~~g----~----~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      +-...    .    ..+..+.++|+++|.++.....
T Consensus       124 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          124 ITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             EECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             EECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            86432    1    3466778899999999887543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=95.68  E-value=0.28  Score=39.33  Aligned_cols=97  Identities=18%  Similarity=0.203  Sum_probs=62.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHH----------hhCC--Cee-eecCCcc--cHHHHHH
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKE----------KLGF--DDA-FNYKEET--DLKATLK   97 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~----------~~g~--~~~-~~~~~~~--~~~~~i~   97 (223)
                      .++++|+=. +|.|..++++|+..|+ +|++++.++.-.+.+++          .+|.  ..+ +-..+-.  .+.+.+ 
T Consensus       172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~-  250 (438)
T 3uwp_A          172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI-  250 (438)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHH-
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccccc-
Confidence            788888777 8999999999999998 59999999865544431          2343  222 1111110  121111 


Q ss_pred             HhCCCCccEEEc-CC--Ch---HHHHHHHHhhccCcEEEEEcccc
Q 043295           98 RYFPDGIDVYFD-NV--GG---EMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        98 ~~~~~~~d~vid-~~--g~---~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                          +.+|+|+- +.  ..   ..+...++.|+|||++|......
T Consensus       251 ----~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~  291 (438)
T 3uwp_A          251 ----ANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFA  291 (438)
T ss_dssp             ----HTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred             ----CCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeeccc
Confidence                13888873 22  22   24667788999999999875443

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=95.67  E-value=0.0047  Score=45.16  Aligned_cols=94  Identities=15%  Similarity=0.125  Sum_probs=63.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-------CeEEEEecCHHHHHHHHHhh---C-----CCee-eecCCcccHHHHHH
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-------CYVVGSAGTNEKVAILKEKL---G-----FDDA-FNYKEETDLKATLK   97 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-------~~v~~~~~~~~~~~~~~~~~---g-----~~~~-~~~~~~~~~~~~i~   97 (223)
                      +++.+||-. ++.|..+..+++..|       .+|++++.+++..+.+++.+   +     ...+ +...   +..+   
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~---d~~~---  156 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG---DGRK---  156 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES---CGGG---
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC---Cccc---
Confidence            678899999 777999999999776       49999999998877776322   1     1111 1111   1111   


Q ss_pred             HhCC-CCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcc
Q 043295           98 RYFP-DGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus        98 ~~~~-~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .... +.||+|+....- .......+.|+++|+++..-.
T Consensus       157 ~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          157 GYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVG  195 (227)
T ss_dssp             CCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             CCCcCCCccEEEECCchHHHHHHHHHHhcCCCEEEEEEe
Confidence            1111 369999876654 345778889999999887543

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=95.67  E-value=0.031  Score=41.87  Aligned_cols=77  Identities=14%  Similarity=0.264  Sum_probs=49.0

Q ss_pred             CCCEEEEE-C----chHHHHHHHHHHcCCeEEEEecCHHH-HHHHHHhhCCCe---eeecCCcccHH---HHHHHhCC--
Q 043295           36 KGEKVFVS-G----AYGHLVGQYAKLGGCYVVGSAGTNEK-VAILKEKLGFDD---AFNYKEETDLK---ATLKRYFP--  101 (223)
Q Consensus        36 ~g~~vlI~-g----~vG~~a~qla~~~g~~v~~~~~~~~~-~~~~~~~~g~~~---~~~~~~~~~~~---~~i~~~~~--  101 (223)
                      .+++++|+ +    ++|.+.++.....|++|+.+++++++ .+.+.++++...   ..|-.+.++..   +.+.+..+  
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~~   85 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAG   85 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            46788888 4    78898888888889999999988765 355543454321   13444431222   22333333  


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|+++++.|
T Consensus        86 ~~iD~lv~nAg   96 (269)
T 2h7i_A           86 NKLDGVVHSIG   96 (269)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCceEEEECCc
Confidence            16999999886

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=95.65  E-value=0.033  Score=41.41  Aligned_cols=72  Identities=14%  Similarity=0.150  Sum_probs=46.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHH---HHHHHhCCCCccE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLK---ATLKRYFPDGIDV  106 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~---~~i~~~~~~~~d~  106 (223)
                      .++++||+   +++|.+.++.....|++|+.++++.++  ... +++....   .|-.+.++..   +.+.+  .+++|+
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~--~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~--~g~id~   82 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGED--VVA-DLGDRARFAAADVTDEAAVASALDLAET--MGTLRI   82 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHH--HHH-HTCTTEEEEECCTTCHHHHHHHHHHHHH--HSCEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHH--HHH-hcCCceEEEECCCCCHHHHHHHHHHHHH--hCCCCE
Confidence            46789999   899999998888889999999975443  233 4554221   2333331222   22222  137999


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      ++++.|
T Consensus        83 lv~nAg   88 (257)
T 3tl3_A           83 VVNCAG   88 (257)
T ss_dssp             EEECGG
T ss_pred             EEECCC
Confidence            999988

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.65  E-value=0.0031  Score=48.65  Aligned_cols=113  Identities=14%  Similarity=0.038  Sum_probs=70.5

Q ss_pred             hccccchhhHHHHHHH---------Hh--hCCCEEEEE--C-chHHHHHHHHHHcCCeEEEEecCHHHH-HHHHHhhCCC
Q 043295           17 NGAGTSGFTAYVGFYE---------IS--QKGEKVFVS--G-AYGHLVGQYAKLGGCYVVGSAGTNEKV-AILKEKLGFD   81 (223)
Q Consensus        17 a~l~~~~~ta~~~l~~---------~~--~~g~~vlI~--g-~vG~~a~qla~~~g~~v~~~~~~~~~~-~~~~~~~g~~   81 (223)
                      .-+||+...+...+.+         ..  -.|.+++|.  | .+|..+++++...|++|+...++..+. +... .++..
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~-~la~~  224 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGE-SLKLN  224 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCC-CSSCC
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHH-HHhhh
Confidence            3456666666666766         33  578899999  5 369999999999999998887653221 1111 23221


Q ss_pred             -eee-e---cCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           82 -DAF-N---YKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        82 -~~~-~---~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                       +.. .   ++.. ++.+.+++     +|+||.++|.+.+--.-+.++++..++.+|.+.
T Consensus       225 ~~~~t~~~~t~~~-~L~e~l~~-----ADIVIsAtg~p~~vI~~e~vk~GavVIDVgi~r  278 (320)
T 1edz_A          225 KHHVEDLGEYSED-LLKKCSLD-----SDVVITGVPSENYKFPTEYIKEGAVCINFACTK  278 (320)
T ss_dssp             CCEEEEEEECCHH-HHHHHHHH-----CSEEEECCCCTTCCBCTTTSCTTEEEEECSSSC
T ss_pred             cccccccccccHh-HHHHHhcc-----CCEEEECCCCCcceeCHHHcCCCeEEEEcCCCc
Confidence             110 0   1012 45555555     899999999753211223468888889998754

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=95.64  E-value=0.046  Score=40.44  Aligned_cols=96  Identities=14%  Similarity=0.101  Sum_probs=64.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEc-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFD-  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid-  109 (223)
                      .++.+||-. +|.|..+..+++..+.+|++++.++...+.+++.   .|...-+..... +.. .+ ....+.+|+|+. 
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~~-~~-~~~~~~fD~v~~~  121 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITG-SMD-NL-PFQNEELDLIWSE  121 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-CTT-SC-SSCTTCEEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC-Chh-hC-CCCCCCEEEEEec
Confidence            678899888 8889999999999888999999999888777632   343210111111 110 00 011237999964 


Q ss_pred             ----CCCh-HHHHHHHHhhccCcEEEEEc
Q 043295          110 ----NVGG-EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       110 ----~~g~-~~~~~~~~~l~~~G~~v~~g  133 (223)
                          ..+. ..+..+.++|+|||.++...
T Consensus       122 ~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          122 GAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             SCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence                2322 46788889999999998775

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=95.63  E-value=0.073  Score=42.58  Aligned_cols=94  Identities=12%  Similarity=0.056  Sum_probs=65.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-  112 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-  112 (223)
                      .++.+||=. ++.|..+..+++ .|.+|++++.++...+.++ +.+.......-.. ...+.+. ...+.+|+|+..-. 
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~-~g~~v~gvD~s~~~~~~a~-~~~~~~~~~~~~~-~~~~~l~-~~~~~fD~I~~~~vl  181 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQE-AGVRHLGFEPSSGVAAKAR-EKGIRVRTDFFEK-ATADDVR-RTEGPANVIYAANTL  181 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHH-TTCEEEEECCCHHHHHHHH-TTTCCEECSCCSH-HHHHHHH-HHHCCEEEEEEESCG
T ss_pred             CCCCEEEEecCCCCHHHHHHHH-cCCcEEEECCCHHHHHHHH-HcCCCcceeeech-hhHhhcc-cCCCCEEEEEECChH
Confidence            578898888 788888888776 4889999999999999998 6666444322222 2222222 12246999975332 


Q ss_pred             ----h--HHHHHHHHhhccCcEEEEE
Q 043295          113 ----G--EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       113 ----~--~~~~~~~~~l~~~G~~v~~  132 (223)
                          .  ..+..+.++|+++|.++..
T Consensus       182 ~h~~d~~~~l~~~~r~LkpgG~l~i~  207 (416)
T 4e2x_A          182 CHIPYVQSVLEGVDALLAPDGVFVFE  207 (416)
T ss_dssp             GGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence                2  3678888999999999875

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=95.62  E-value=0.034  Score=46.94  Aligned_cols=76  Identities=21%  Similarity=0.264  Sum_probs=47.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH---------HHHHHHHH---hhCCCeeeecCCccc---HHHHHH
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN---------EKVAILKE---KLGFDDAFNYKEETD---LKATLK   97 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~---------~~~~~~~~---~~g~~~~~~~~~~~~---~~~~i~   97 (223)
                      .++.++|+   +++|.+.++.....|++|+..+++.         ++.+.+.+   ..|...+.|..+.++   +.+.+.
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~~   86 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETAV   86 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH
Confidence            46788888   7999999999999999999987643         33333221   335444455554323   233333


Q ss_pred             HhCCCCccEEEcCCC
Q 043295           98 RYFPDGIDVYFDNVG  112 (223)
Q Consensus        98 ~~~~~~~d~vid~~g  112 (223)
                      +.. |++|+++++.|
T Consensus        87 ~~~-G~iDiLVnNAG  100 (604)
T 2et6_A           87 KNF-GTVHVIINNAG  100 (604)
T ss_dssp             HHH-SCCCEEEECCC
T ss_pred             HHc-CCCCEEEECCC
Confidence            322 36999999887

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=95.62  E-value=0.038  Score=40.16  Aligned_cols=95  Identities=15%  Similarity=0.134  Sum_probs=61.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHhhCC-Cee--eecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEKLGF-DDA--FNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~~g~-~~~--~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      .++++||-. +|.|..+..+++..|  .+|++++.++...+.+++.... ..+  +..+-. +.. .. ....+.+|+|+
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~-~~~-~~-~~~~~~~D~v~  148 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDAT-KPE-EY-RALVPKVDVIF  148 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTT-CGG-GG-TTTCCCEEEEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCC-Ccc-hh-hcccCCceEEE
Confidence            678898888 778999999998874  6999999999766665522211 111  111111 100 00 01123699998


Q ss_pred             cCCChH----H-HHHHHHhhccCcEEEEE
Q 043295          109 DNVGGE----M-LEAAVANMNLFGRVAAC  132 (223)
Q Consensus       109 d~~g~~----~-~~~~~~~l~~~G~~v~~  132 (223)
                      -.....    . +..+.+.|++||.++..
T Consensus       149 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          149 EDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            554421    3 77888999999999887

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=95.62  E-value=0.15  Score=38.33  Aligned_cols=96  Identities=13%  Similarity=0.118  Sum_probs=63.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CC-CeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GF-DDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~-~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .++.+||-. +|.|..+..+++. |.+|++++.++...+.+++.+   |. ..+ ..... +.. .+....++.+|+|+.
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~-d~~-~~~~~~~~~fD~v~~  142 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNM-QFIHC-AAQ-DVASHLETPVDLILF  142 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGE-EEEES-CGG-GTGGGCSSCEEEEEE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcce-EEEEc-CHH-HhhhhcCCCceEEEE
Confidence            446788888 8889999999888 899999999998888777432   33 121 11111 111 111123347999975


Q ss_pred             CCC-----h--HHHHHHHHhhccCcEEEEEcc
Q 043295          110 NVG-----G--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       110 ~~g-----~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      ...     .  ..+..+.++|+|||.++....
T Consensus       143 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          143 HAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             ESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            322     1  367888899999999987653

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=95.60  E-value=0.046  Score=40.50  Aligned_cols=92  Identities=7%  Similarity=0.017  Sum_probs=62.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh--CCCee-eecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL--GFDDA-FNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~--g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||-. +|.|..+..+++. |.+|++++.++...+.+++.+  +...+ +...+   .. .+ ....+.+|+|+..
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d---~~-~~-~~~~~~fD~v~~~  111 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQAD---AR-AI-PLPDESVHGVIVV  111 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESC---TT-SC-CSCTTCEEEEEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcc---cc-cC-CCCCCCeeEEEEC
Confidence            678898888 7789888888876 889999999999988888433  11111 11111   10 00 0112369999864


Q ss_pred             CC-------hHHHHHHHHhhccCcEEEEE
Q 043295          111 VG-------GEMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       111 ~g-------~~~~~~~~~~l~~~G~~v~~  132 (223)
                      ..       ...+..+.+.|++||.++..
T Consensus       112 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          112 HLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             SCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            43       23577888999999999876

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=95.59  E-value=0.18  Score=35.72  Aligned_cols=93  Identities=14%  Similarity=0.079  Sum_probs=63.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC--
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV--  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~--  111 (223)
                      ..+.+||=. +|.|..+..+++. |.+|++++.++...+.+++...--.++. .+   +.+ + ....+.+|+|+...  
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~d---~~~-~-~~~~~~fD~v~~~~~l  112 (203)
T 3h2b_A           40 GVDGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTHPSVTFHH-GT---ITD-L-SDSPKRWAGLLAWYSL  112 (203)
T ss_dssp             HCCSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHHHHHCTTSEEEC-CC---GGG-G-GGSCCCEEEEEEESSS
T ss_pred             cCCCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhCCCCeEEe-Cc---ccc-c-ccCCCCeEEEEehhhH
Confidence            568888888 8889988888887 8899999999998888883322112221 11   111 1 12234799997632  


Q ss_pred             ---C----hHHHHHHHHhhccCcEEEEEcc
Q 043295          112 ---G----GEMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       112 ---g----~~~~~~~~~~l~~~G~~v~~g~  134 (223)
                         .    ...+..+.+.|+++|.++....
T Consensus       113 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  142 (203)
T 3h2b_A          113 IHMGPGELPDALVALRMAVEDGGGLLMSFF  142 (203)
T ss_dssp             TTCCTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence               2    1357788899999999987653

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=95.57  E-value=0.0049  Score=45.50  Aligned_cols=72  Identities=15%  Similarity=0.160  Sum_probs=45.8

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee--eecCCccc---HHHHHHHhCC-CCcc
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA--FNYKEETD---LKATLKRYFP-DGID  105 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~---~~~~i~~~~~-~~~d  105 (223)
                      ..++++||+   |++|.+.++.....|++|+.+++++++.+      +....  .|-.+.++   +.+.+.+..+ +++|
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc------CCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            357889999   89999999988889999999998765421      10011  12222212   2223333333 4799


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++++.|
T Consensus        79 ~lv~~Ag   85 (241)
T 1dhr_A           79 AILCVAG   85 (241)
T ss_dssp             EEEECCC
T ss_pred             EEEEccc
Confidence            9999887

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=95.56  E-value=0.099  Score=39.47  Aligned_cols=95  Identities=12%  Similarity=-0.035  Sum_probs=62.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CC----C--eeeecCCcccHHHHHHHhCCCCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GF----D--DAFNYKEETDLKATLKRYFPDGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~----~--~~~~~~~~~~~~~~i~~~~~~~~  104 (223)
                      .++.+||=. +|.|..+..+++. |++|++++.++...+.+++..   +.    .  .+...+-. .+.+.+  ...+.+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~--~~~~~f  131 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL-TLDKDV--PAGDGF  131 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG-GHHHHS--CCTTCE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh-hCcccc--ccCCCe
Confidence            667788877 8889999888887 789999999999888886321   11    1  11111111 222211  123379


Q ss_pred             cEEEcC---CC------------hHHHHHHHHhhccCcEEEEEc
Q 043295          105 DVYFDN---VG------------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       105 d~vid~---~g------------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+|+..   ..            ...+..+.++|+|||.++...
T Consensus       132 D~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             EEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            999853   21            135778889999999998653

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.56  E-value=0.051  Score=43.49  Aligned_cols=93  Identities=13%  Similarity=0.074  Sum_probs=60.9

Q ss_pred             CEEEEE--CchHHHHHHHHHHcC---CeEEEEecCHHHHHHHHHhhC------CCe-eeecCCcccHHHHHHHhCCCCcc
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGG---CYVVGSAGTNEKVAILKEKLG------FDD-AFNYKEETDLKATLKRYFPDGID  105 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g---~~v~~~~~~~~~~~~~~~~~g------~~~-~~~~~~~~~~~~~i~~~~~~~~d  105 (223)
                      .+|+|+  |++|..+++.+...|   .+|+..+++.++.+.+.++++      ... ..|..+.+++.+.+.+.   ++|
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~---~~D   78 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV---KPQ   78 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH---CCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh---CCC
Confidence            368888  899999888887777   489999999988776654543      211 23333321333333332   589


Q ss_pred             EEEcCCCh-HHHHHHHHhhccCcEEEEEc
Q 043295          106 VYFDNVGG-EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       106 ~vid~~g~-~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +|++|++. ......-.++..+-.++.++
T Consensus        79 vVin~ag~~~~~~v~~a~l~~g~~vvD~a  107 (405)
T 4ina_A           79 IVLNIALPYQDLTIMEACLRTGVPYLDTA  107 (405)
T ss_dssp             EEEECSCGGGHHHHHHHHHHHTCCEEESS
T ss_pred             EEEECCCcccChHHHHHHHHhCCCEEEec
Confidence            99999985 34445556777777777653

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.56  E-value=0.097  Score=39.63  Aligned_cols=41  Identities=22%  Similarity=0.063  Sum_probs=34.7

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF   80 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~   80 (223)
                      +|.|.  |.+|...++.....|.+|++.++++++.+.+. +.|.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~   45 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLV-ALGA   45 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHH-HHTC
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-HCCC
Confidence            56677  99999888888888999999999999888887 6665

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=95.55  E-value=0.076  Score=39.59  Aligned_cols=97  Identities=12%  Similarity=0.039  Sum_probs=64.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||-. +|.|..+..+++..+++|++++.++...+.+++.   .|...-+..... ++.+ + ....+.+|+|+..
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-~-~~~~~~fD~i~~~  121 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVG-SMDD-L-PFRNEELDLIWSE  121 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-CTTS-C-CCCTTCEEEEEES
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEc-Chhh-C-CCCCCCEEEEEEc
Confidence            678899988 8889999999999666999999999988777632   233210111111 1100 0 0112379999753


Q ss_pred             C-----Ch-HHHHHHHHhhccCcEEEEEcc
Q 043295          111 V-----GG-EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       111 ~-----g~-~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      -     +- ..+..+.++|+|||.++....
T Consensus       122 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          122 GAIYNIGFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             SCGGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             CCceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            2     22 357788889999999987654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.55  E-value=0.15  Score=39.15  Aligned_cols=65  Identities=15%  Similarity=0.034  Sum_probs=46.8

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      -.+|.|.  |.+|...++.....|.+|++.++++++.+.+. +.|+...   .   +..+.+..     .|+||-|+..
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~~~---~---~~~~~~~~-----aDvvi~~vp~   87 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELV-EHGASVC---E---SPAEVIKK-----CKYTIAMLSD   87 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH-HTTCEEC---S---SHHHHHHH-----CSEEEECCSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HCCCeEc---C---CHHHHHHh-----CCEEEEEcCC
Confidence            3578888  99999999888889999999999999988887 6665321   1   23333322     5677766654

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=95.55  E-value=0.041  Score=41.07  Aligned_cols=77  Identities=19%  Similarity=0.244  Sum_probs=47.8

Q ss_pred             hCCCEEEEE--C---chHHHHHHHHHHcCCeEEEEecCHHH-----HHHHHHhhCCCee---eecCCcccHH---HHHHH
Q 043295           35 QKGEKVFVS--G---AYGHLVGQYAKLGGCYVVGSAGTNEK-----VAILKEKLGFDDA---FNYKEETDLK---ATLKR   98 (223)
Q Consensus        35 ~~g~~vlI~--g---~vG~~a~qla~~~g~~v~~~~~~~~~-----~~~~~~~~g~~~~---~~~~~~~~~~---~~i~~   98 (223)
                      -.+++++|+  +   ++|.+.++.....|++|+.++++..+     .+.+.+..+....   .|-.+.++..   +.+.+
T Consensus        18 l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (267)
T 3gdg_A           18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVA   97 (267)
T ss_dssp             CTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHH
Confidence            567899999  4   79999888888889999999876432     2333323343221   2333331222   23333


Q ss_pred             hCCCCccEEEcCCC
Q 043295           99 YFPDGIDVYFDNVG  112 (223)
Q Consensus        99 ~~~~~~d~vid~~g  112 (223)
                      .. +++|+++++.|
T Consensus        98 ~~-g~id~li~nAg  110 (267)
T 3gdg_A           98 DF-GQIDAFIANAG  110 (267)
T ss_dssp             HT-SCCSEEEECCC
T ss_pred             Hc-CCCCEEEECCC
Confidence            32 36999999887

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=95.54  E-value=0.032  Score=40.50  Aligned_cols=97  Identities=11%  Similarity=0.106  Sum_probs=63.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-------eecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-------FNYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      +++.+||-. +|.|..+..+++. |++|++++.++...+.+++......+       +..... +..+ + ....+.+|+
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-d~~~-~-~~~~~~~D~  104 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVE-NASS-L-SFHDSSFDF  104 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEEC-CTTS-C-CSCTTCEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEe-cccc-c-CCCCCceeE
Confidence            678899888 7889999998887 88999999999988888832221110       111111 1100 0 011237999


Q ss_pred             EEcCCC-----h-----HHHHHHHHhhccCcEEEEEccc
Q 043295          107 YFDNVG-----G-----EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       107 vid~~g-----~-----~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      |+-...     .     ..+..+.+.|+++|.++.....
T Consensus       105 v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (235)
T 3sm3_A          105 AVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG  143 (235)
T ss_dssp             EEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             EEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence            874321     1     3577788899999999887643

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.54  E-value=0.044  Score=40.25  Aligned_cols=70  Identities=19%  Similarity=0.159  Sum_probs=46.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .+.+|+|+   |.+|...++.+...  |++|+++++++.+.+.+.  -+...+ .|..+.    +.+.+... ++|+||.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~D~~d~----~~~~~~~~-~~d~vi~   75 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG--GEADVFIGDITDA----DSINPAFQ-GIDALVI   75 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT--CCTTEEECCTTSH----HHHHHHHT-TCSEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcC--CCeeEEEecCCCH----HHHHHHHc-CCCEEEE
Confidence            46789999   89999999888887  889999999877654321  122221 233332    22333322 4899999


Q ss_pred             CCC
Q 043295          110 NVG  112 (223)
Q Consensus       110 ~~g  112 (223)
                      +.|
T Consensus        76 ~a~   78 (253)
T 1xq6_A           76 LTS   78 (253)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            876

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=95.53  E-value=0.057  Score=43.85  Aligned_cols=97  Identities=19%  Similarity=0.142  Sum_probs=63.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCC-CCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFP-DGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~-~~~d~v  107 (223)
                      +++++||-. .+.|..+.+++...+  .+|++++.++.+.+.+++   .+|...+.-...  +..+ ...... +.||.|
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~--D~~~-~~~~~~~~~fD~V  334 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVK--DARK-APEIIGEEVADKV  334 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECS--CTTC-CSSSSCSSCEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEc--Chhh-cchhhccCCCCEE
Confidence            788898888 777999999999874  699999999998877763   236543311111  1100 001122 369998


Q ss_pred             Ec---CCCh--------------------------HHHHHHHHhhccCcEEEEEcc
Q 043295          108 FD---NVGG--------------------------EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       108 id---~~g~--------------------------~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      +-   |+|.                          ..+..++++|++||+++....
T Consensus       335 l~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc  390 (450)
T 2yxl_A          335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC  390 (450)
T ss_dssp             EEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             EEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            74   4442                          236677889999999997654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=95.53  E-value=0.13  Score=39.99  Aligned_cols=94  Identities=18%  Similarity=0.134  Sum_probs=60.4

Q ss_pred             CCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCe--eeecCCcccHHHHHHHhC--CCCccEE
Q 043295           36 KGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDD--AFNYKEETDLKATLKRYF--PDGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~--~~~~~~~~~~~~~i~~~~--~~~~d~v  107 (223)
                      ++.+||=. ++.|..++.+++. |++|++++.++..++.+++.   .|.+.  + ..... +..+.+....  ++.||+|
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v-~~i~~-D~~~~l~~~~~~~~~fD~I  229 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPI-RWICE-DAMKFIQREERRGSTYDII  229 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCE-EEECS-CHHHHHHHHHHHTCCBSEE
T ss_pred             CCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccce-EEEEC-cHHHHHHHHHhcCCCceEE
Confidence            56788888 8889888888874 77999999999988877632   34431  2 11122 3333333221  2369988


Q ss_pred             EcCC---C--------------hHHHHHHHHhhccCcEEEEE
Q 043295          108 FDNV---G--------------GEMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       108 id~~---g--------------~~~~~~~~~~l~~~G~~v~~  132 (223)
                      +-..   +              ...+..+.++|+++|.++..
T Consensus       230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~  271 (332)
T 2igt_A          230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL  271 (332)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred             EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            6511   1              13466778899999995544

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.50  E-value=0.099  Score=40.24  Aligned_cols=87  Identities=15%  Similarity=0.080  Sum_probs=56.1

Q ss_pred             CEEEEE--CchHHHHHHHH-H-HcCCeEEEEecC-HHH--HHHHHHhhCCCeeeecCCcccHHHHHHHhCCC-CccEEEc
Q 043295           38 EKVFVS--GAYGHLVGQYA-K-LGGCYVVGSAGT-NEK--VAILKEKLGFDDAFNYKEETDLKATLKRYFPD-GIDVYFD  109 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla-~-~~g~~v~~~~~~-~~~--~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~-~~d~vid  109 (223)
                      -+|.|.  |.+|...+..+ + ..+.++++++.. +++  .+..+ ++|.....      +..+.+.+.++. ++|+|++
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~-~~g~~~~~------~~~e~ll~~~~~~~iDvV~~   77 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ-RMGVTTTY------AGVEGLIKLPEFADIDFVFD   77 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH-HTTCCEES------SHHHHHHHSGGGGGEEEEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHH-HcCCCccc------CCHHHHHhccCCCCCcEEEE
Confidence            467788  99998888777 4 346777766643 344  45555 78764221      223334333333 6999999


Q ss_pred             CCCh-HHHHHHHHhhcc--CcEEEE
Q 043295          110 NVGG-EMLEAAVANMNL--FGRVAA  131 (223)
Q Consensus       110 ~~g~-~~~~~~~~~l~~--~G~~v~  131 (223)
                      |++. .+.+.+..++..  |..+++
T Consensus        78 atp~~~h~~~a~~al~a~~Gk~Vi~  102 (312)
T 1nvm_B           78 ATSASAHVQNEALLRQAKPGIRLID  102 (312)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CCChHHHHHHHHHHHHhCCCCEEEE
Confidence            9996 467777778877  777666

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=95.49  E-value=0.14  Score=41.31  Aligned_cols=96  Identities=15%  Similarity=0.112  Sum_probs=65.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHh---hCCC-eeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEK---LGFD-DAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~---~g~~-~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      +++++||=. .+.|..+.+++...+ .+|++++.++.+.+.+++.   +|.. .++..+-. .+...   ..++.||.|+
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~-~~~~~---~~~~~fD~Vl  320 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGR-YPSQW---CGEQQFDRIL  320 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTT-CTHHH---HTTCCEEEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchh-hchhh---cccCCCCEEE
Confidence            788998888 777999999999875 6999999999888777632   3542 22222211 22211   2223799987


Q ss_pred             c---CCCh--------------------------HHHHHHHHhhccCcEEEEEcc
Q 043295          109 D---NVGG--------------------------EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 d---~~g~--------------------------~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      -   |+|.                          ..+..++++|++||+++....
T Consensus       321 ~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc  375 (429)
T 1sqg_A          321 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  375 (429)
T ss_dssp             EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             EeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            4   5541                          236677889999999988653

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.49  E-value=0.078  Score=39.95  Aligned_cols=101  Identities=11%  Similarity=0.043  Sum_probs=66.2

Q ss_pred             hhHHHHHHHH-h------hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCC--CeeeecCCccc
Q 043295           24 FTAYVGFYEI-S------QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGF--DDAFNYKEETD   91 (223)
Q Consensus        24 ~ta~~~l~~~-~------~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~   91 (223)
                      -|-+.++.+. -      -.+++++|.  |++|.+++..+...|+ +|+.+.++.++.+.+.++++.  ..+.++.   +
T Consensus       100 NTD~~G~~~~lL~~~~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~---~  176 (272)
T 3pwz_A          100 NFDGIGLLRDIEENLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYE---A  176 (272)
T ss_dssp             CCHHHHHHHHHHTTSCCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSG---G
T ss_pred             cCCHHHHHHHHHHHcCCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHH---H
Confidence            4555555543 2      368899999  8999999988888997 999999999887766646654  1222222   1


Q ss_pred             HHHHHHHhCCCCccEEEcCCChHHHH----HHHHhhccCcEEEEEcc
Q 043295           92 LKATLKRYFPDGIDVYFDNVGGEMLE----AAVANMNLFGRVAACGV  134 (223)
Q Consensus        92 ~~~~i~~~~~~~~d~vid~~g~~~~~----~~~~~l~~~G~~v~~g~  134 (223)
                      +.       ...+|+|++|++.....    .....++++..++.+..
T Consensus       177 l~-------~~~~DivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY  216 (272)
T 3pwz_A          177 LE-------GQSFDIVVNATSASLTADLPPLPADVLGEAALAYELAY  216 (272)
T ss_dssp             GT-------TCCCSEEEECSSGGGGTCCCCCCGGGGTTCSEEEESSC
T ss_pred             hc-------ccCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeec
Confidence            11       13599999998742111    12345677777777654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.48  E-value=0.13  Score=38.66  Aligned_cols=84  Identities=14%  Similarity=0.156  Sum_probs=56.5

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChHHH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEML  116 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~  116 (223)
                      +|.|.  |.+|...+......|.+|++.++++++.+.+. +.|..... ..   ++.    +.  .+.|+|+-|+.....
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~~~-~~---~~~----~~--~~~D~vi~av~~~~~   70 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-ERQLVDEA-GQ---DLS----LL--QTAKIIFLCTPIQLI   70 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTSCSEE-ES---CGG----GG--TTCSEEEECSCHHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hCCCCccc-cC---CHH----Hh--CCCCEEEEECCHHHH
Confidence            56777  89999988888888999999999999888887 77763111 11   111    11  248999999987544


Q ss_pred             HHHHH----hhccCcEEEEEc
Q 043295          117 EAAVA----NMNLFGRVAACG  133 (223)
Q Consensus       117 ~~~~~----~l~~~G~~v~~g  133 (223)
                      ...+.    .++++..++.++
T Consensus        71 ~~~~~~l~~~~~~~~~vv~~~   91 (279)
T 2f1k_A           71 LPTLEKLIPHLSPTAIVTDVA   91 (279)
T ss_dssp             HHHHHHHGGGSCTTCEEEECC
T ss_pred             HHHHHHHHhhCCCCCEEEECC
Confidence            44433    445566666653

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=95.48  E-value=0.0048  Score=45.79  Aligned_cols=72  Identities=15%  Similarity=0.159  Sum_probs=46.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCC--CCccEEEcC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFP--DGIDVYFDN  110 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~--~~~d~vid~  110 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++.+.+.   +  ...|-.+.++..+.+.+...  +++|+++++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~---~--~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~   88 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF---G--VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   88 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSE---E--EECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhc---C--eeccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            46789999   89999999888889999999998765433211   1  22344443123222222211  368999998


Q ss_pred             CC
Q 043295          111 VG  112 (223)
Q Consensus       111 ~g  112 (223)
                      .|
T Consensus        89 Ag   90 (247)
T 1uzm_A           89 AG   90 (247)
T ss_dssp             CS
T ss_pred             CC
Confidence            87

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.48  E-value=0.04  Score=41.28  Aligned_cols=78  Identities=22%  Similarity=0.279  Sum_probs=47.0

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEe-cCHHHHHHHHHh---hCCCe-e--eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSA-GTNEKVAILKEK---LGFDD-A--FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~-~~~~~~~~~~~~---~g~~~-~--~~~~~~~~~~~~i~~~~~--~  102 (223)
                      ..+++++|+   |++|.+.++.....|++|+.++ ++.++.+...+.   .+... .  .|-.+.++..+.+.+...  +
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFG  102 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            456788998   8999999988888999999988 555444333212   23221 1  344433122222222221  2


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus       103 ~id~li~nAg  112 (269)
T 3gk3_A          103 KVDVLINNAG  112 (269)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999887

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=95.48  E-value=0.018  Score=42.76  Aligned_cols=72  Identities=15%  Similarity=0.294  Sum_probs=46.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe-eeecCCcccHHHHHHHhC--CCCccEEEc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD-AFNYKEETDLKATLKRYF--PDGIDVYFD  109 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~--~~~~d~vid  109 (223)
                      .++++||+   |++|.+.++.....|++|+.++++++.    + +.+... ..|-.+.+++.+.+.+..  -+++|++++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~----~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~   80 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ----E-QYPFATEVMDVADAAQVAQVCQRLLAETERLDALVN   80 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS----S-CCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh----h-cCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            46789999   899999999888899999999987642    2 334211 134443312333333221  136999999


Q ss_pred             CCC
Q 043295          110 NVG  112 (223)
Q Consensus       110 ~~g  112 (223)
                      +.|
T Consensus        81 ~Ag   83 (250)
T 2fwm_X           81 AAG   83 (250)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            887

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.48  E-value=0.045  Score=43.06  Aligned_cols=83  Identities=14%  Similarity=0.092  Sum_probs=56.6

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh-
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG-  113 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~-  113 (223)
                      |++|.|.  |.+|...++.++..|.+|++.+++... +... ..|+..      . ++.+.+.+     .|+|+-++.. 
T Consensus       176 gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-~~g~~~------~-~l~ell~~-----aDvV~l~~Plt  241 (365)
T 4hy3_A          176 GSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLE-ENGVEP------A-SLEDVLTK-----SDFIFVVAAVT  241 (365)
T ss_dssp             SSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHH-HTTCEE------C-CHHHHHHS-----CSEEEECSCSS
T ss_pred             CCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHh-hcCeee------C-CHHHHHhc-----CCEEEEcCcCC
Confidence            6799999  999999999999999999999987533 4444 566531      1 33333332     6777765542 


Q ss_pred             -HH----HHHHHHhhccCcEEEEEc
Q 043295          114 -EM----LEAAVANMNLFGRVAACG  133 (223)
Q Consensus       114 -~~----~~~~~~~l~~~G~~v~~g  133 (223)
                       ++    -...+..|++++.++.++
T Consensus       242 ~~T~~li~~~~l~~mk~gailIN~a  266 (365)
T 4hy3_A          242 SENKRFLGAEAFSSMRRGAAFILLS  266 (365)
T ss_dssp             CC---CCCHHHHHTSCTTCEEEECS
T ss_pred             HHHHhhcCHHHHhcCCCCcEEEECc
Confidence             11    135667778888887776

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=95.46  E-value=0.14  Score=36.35  Aligned_cols=94  Identities=21%  Similarity=0.204  Sum_probs=61.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||-. +|.|..+..+++.-..+|++++.++...+.+++.   .+...+ ..... +..    +...+.+|+|+..
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v-~~~~~-d~~----~~~~~~fD~i~~~  132 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDI-ALQKT-SLL----ADVDGKFDLIVAN  132 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCC-EEEES-STT----TTCCSCEEEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCce-EEEec-ccc----ccCCCCceEEEEC
Confidence            678899888 7779988888775334999999999888777732   243321 11111 111    1223479999876


Q ss_pred             CChHH----HHHHHHhhccCcEEEEEcc
Q 043295          111 VGGEM----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       111 ~g~~~----~~~~~~~l~~~G~~v~~g~  134 (223)
                      ..-..    +..+.+.|+++|.++..+.
T Consensus       133 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~  160 (205)
T 3grz_A          133 ILAEILLDLIPQLDSHLNEDGQVIFSGI  160 (205)
T ss_dssp             SCHHHHHHHGGGSGGGEEEEEEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            65433    4455668899999988654

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=95.44  E-value=0.066  Score=42.92  Aligned_cols=77  Identities=16%  Similarity=0.118  Sum_probs=50.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHH-cCCeEEEEecCHHHH----------------HHHHHhhCCCee---eecCCc---
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKL-GGCYVVGSAGTNEKV----------------AILKEKLGFDDA---FNYKEE---   89 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~-~g~~v~~~~~~~~~~----------------~~~~~~~g~~~~---~~~~~~---   89 (223)
                      .++++||+   +++|++.++.... .|++|+.++++.+..                +.++ ..|....   .|-.+.   
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~-~~G~~a~~i~~Dvtd~~~v  138 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAK-AAGLYSKSINGDAFSDAAR  138 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHH-HTTCCEEEEESCTTSHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHH-hcCCcEEEEEecCCCHHHH
Confidence            57788999   7999988887777 999999998764321                3344 5565322   233332   


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCCh
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      ....+.+.+..+|++|+++++.|.
T Consensus       139 ~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          139 AQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             HHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCCEEEEcCcc
Confidence            123444555553579999998764

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=95.43  E-value=0.2  Score=39.71  Aligned_cols=95  Identities=15%  Similarity=0.075  Sum_probs=64.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHh---h---------------CCCeeeecCCcccHHH
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKEK---L---------------GFDDAFNYKEETDLKA   94 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~~---~---------------g~~~~~~~~~~~~~~~   94 (223)
                      .++.+||=. ++.|..++.+++..+ .+|++++.+++..+.+++.   .               |.+.+ ..... +..+
T Consensus        46 ~~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i-~v~~~-Da~~  123 (378)
T 2dul_A           46 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTI-VINHD-DANR  123 (378)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEE-EEEES-CHHH
T ss_pred             cCCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCce-EEEcC-cHHH
Confidence            467787766 899999999999876 4999999999988777642   3               54332 11112 3333


Q ss_pred             HHHHhCCCCccEEE-cCCCh--HHHHHHHHhhccCcEEEEE
Q 043295           95 TLKRYFPDGIDVYF-DNVGG--EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus        95 ~i~~~~~~~~d~vi-d~~g~--~~~~~~~~~l~~~G~~v~~  132 (223)
                      .+... .+.||+|+ |.-+.  +.++.++..++++|.+...
T Consensus       124 ~~~~~-~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          124 LMAER-HRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             HHHHS-TTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHhc-cCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEE
Confidence            33332 33689775 55453  5688899999999966544

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=95.43  E-value=0.038  Score=40.45  Aligned_cols=94  Identities=15%  Similarity=0.111  Sum_probs=63.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC-CeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF-DDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      .++.+||-. +|.|..+..+++. |++|++++.++...+.++ +... ..+ ..... +..+ + ....+.+|+|+....
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~-~~~~~~~~-~~~~~-d~~~-~-~~~~~~fD~v~~~~~  125 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGK-ERGEGPDL-SFIKG-DLSS-L-PFENEQFEAIMAINS  125 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHH-TTTCBTTE-EEEEC-BTTB-C-SSCTTCEEEEEEESC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHH-hhcccCCc-eEEEc-chhc-C-CCCCCCccEEEEcCh
Confidence            678899888 8889998888887 889999999999988888 4422 111 11111 1100 0 011237999975332


Q ss_pred             -----h--HHHHHHHHhhccCcEEEEEcc
Q 043295          113 -----G--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 -----~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                           .  ..+..+.+.|+++|.++....
T Consensus       126 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          126 LEWTEEPLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             TTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence                 1  367888899999999987753

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=95.42  E-value=0.08  Score=37.53  Aligned_cols=94  Identities=15%  Similarity=0.106  Sum_probs=60.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++ +||-. ++.|..+..+++. |.+|++++.++...+.+++.+   +....+...+   +.+ . ....+.+|+|+.+
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d---~~~-~-~~~~~~fD~v~~~  101 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSN---LAD-F-DIVADAWEGIVSI  101 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCB---TTT-B-SCCTTTCSEEEEE
T ss_pred             CCC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcC---hhh-c-CCCcCCccEEEEE
Confidence            566 88877 7779988888875 889999999998887777332   3211111111   110 0 1112369999865


Q ss_pred             CC-------hHHHHHHHHhhccCcEEEEEccc
Q 043295          111 VG-------GEMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       111 ~g-------~~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      ..       ...+..+.+.|+++|.++.....
T Consensus       102 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A          102 FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            32       12467778899999999887643

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=95.40  E-value=0.13  Score=38.01  Aligned_cols=94  Identities=12%  Similarity=0.164  Sum_probs=63.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCee-eecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDA-FNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .++.+||-. ++.|..+..+++.. .+|++++.++..++.+++.   .|...+ +...+..++     ...++.+|+|+.
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l-----~~~~~~fD~V~~  109 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-----PFTDERFHIVTC  109 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-----CSCTTCEEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC-----CCCCCCEEEEEE
Confidence            788899999 78899888888764 5999999999888877632   233222 111111011     111237999986


Q ss_pred             CCCh-------HHHHHHHHhhccCcEEEEEcc
Q 043295          110 NVGG-------EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       110 ~~g~-------~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      ...-       ..+..+.+.|+|||.++....
T Consensus       110 ~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A          110 RIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            5331       367888899999999988643

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=95.40  E-value=0.061  Score=43.71  Aligned_cols=77  Identities=16%  Similarity=0.268  Sum_probs=48.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH--HHHHHHHhhCCCee-eecCCcccHH---HHHHHhCCCCccE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE--KVAILKEKLGFDDA-FNYKEETDLK---ATLKRYFPDGIDV  106 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~--~~~~~~~~~g~~~~-~~~~~~~~~~---~~i~~~~~~~~d~  106 (223)
                      +++++||+   |++|...++.....|++|+.++++..  +.+...++.+...+ .|-.+.+...   +.+.+..++.+|+
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id~  291 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVDI  291 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCSE
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCceE
Confidence            46788999   89999988888788999999987543  23332225555322 3444431222   3333333335999


Q ss_pred             EEcCCC
Q 043295          107 YFDNVG  112 (223)
Q Consensus       107 vid~~g  112 (223)
                      +|++.|
T Consensus       292 lV~nAG  297 (454)
T 3u0b_A          292 LVNNAG  297 (454)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999887

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.40  E-value=0.049  Score=42.63  Aligned_cols=86  Identities=21%  Similarity=0.176  Sum_probs=56.8

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .|.+|.|.  |.+|...++.++..|.+|++.+++..+ .... .+|+..+.      ++.+.+.+     .|+|+-++..
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-~~g~~~~~------~l~ell~~-----aDvV~l~~P~  233 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD-GVER-ALGLQRVS------TLQDLLFH-----SDCVTLHCGL  233 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCT-THHH-HHTCEECS------SHHHHHHH-----CSEEEECCCC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhHh-hcCCeecC------CHHHHHhc-----CCEEEEcCCC
Confidence            46789899  999999999999999999999876544 2334 56653221      23333332     6777766542


Q ss_pred             -H----HH-HHHHHhhccCcEEEEEcc
Q 043295          114 -E----ML-EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       114 -~----~~-~~~~~~l~~~G~~v~~g~  134 (223)
                       +    .+ ...+..|++++.++.++.
T Consensus       234 t~~t~~li~~~~l~~mk~gailIN~ar  260 (347)
T 1mx3_A          234 NEHNHHLINDFTVKQMRQGAFLVNTAR  260 (347)
T ss_dssp             CTTCTTSBSHHHHTTSCTTEEEEECSC
T ss_pred             CHHHHHHhHHHHHhcCCCCCEEEECCC
Confidence             1    12 455667777777777664

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.39  E-value=0.075  Score=41.31  Aligned_cols=84  Identities=19%  Similarity=0.084  Sum_probs=58.1

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .|.+|.|.  |.+|...++.++..|++|++.+++.++.  +. +. +..    .+  ++.+.+.+     .|+|+.++..
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~-~~-~~~----~~--~l~ell~~-----aDvV~l~~p~  209 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LE-KK-GYY----VD--SLDDLYKQ-----ADVISLHVPD  209 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HH-HT-TCB----CS--CHHHHHHH-----CSEEEECSCC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HH-hh-Cee----cC--CHHHHHhh-----CCEEEEcCCC
Confidence            35689899  9999999999999999999999877654  23 33 321    11  23333332     7888887763


Q ss_pred             -H-H---H-HHHHHhhccCcEEEEEcc
Q 043295          114 -E-M---L-EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       114 -~-~---~-~~~~~~l~~~G~~v~~g~  134 (223)
                       + +   + ...+..|++++.++.++.
T Consensus       210 ~~~t~~li~~~~l~~mk~ga~lIn~ar  236 (333)
T 1j4a_A          210 VPANVHMINDESIAKMKQDVVIVNVSR  236 (333)
T ss_dssp             CGGGTTCBSHHHHHHSCTTEEEEECSC
T ss_pred             cHHHHHHHhHHHHhhCCCCcEEEECCC
Confidence             2 1   1 346678888888888765

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.39  E-value=0.052  Score=42.22  Aligned_cols=43  Identities=21%  Similarity=0.137  Sum_probs=35.1

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF   80 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~   80 (223)
                      .|.+|.|.  |.+|...++.++..|.+|++.+++.++ +... ++|.
T Consensus       145 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-~~g~  189 (333)
T 2d0i_A          145 YGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEK-ELKA  189 (333)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHH-HHTE
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhh-hcCc
Confidence            35689888  999999999999999999999988766 5444 5554

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.38  E-value=0.025  Score=43.73  Aligned_cols=74  Identities=15%  Similarity=0.095  Sum_probs=45.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHH----HHHHHhhCCC-ee--eecCCcccHHHHHHHhCCCCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKV----AILKEKLGFD-DA--FNYKEETDLKATLKRYFPDGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~----~~~~~~~g~~-~~--~~~~~~~~~~~~i~~~~~~~~d  105 (223)
                      .+.+|||+   |.+|..+++.....|++|++++++..+.    +.+.+..+.. ..  .|-.+.+.+.+.+.+   +++|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~~~d   80 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDA---HPIT   80 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHH---SCCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhc---cCCc
Confidence            35689999   8999999998888899999999765432    2222112321 11  233332122222222   3699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +|+++.+
T Consensus        81 ~vih~A~   87 (341)
T 3enk_A           81 AAIHFAA   87 (341)
T ss_dssp             EEEECCC
T ss_pred             EEEECcc
Confidence            9999987

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.37  E-value=0.023  Score=40.67  Aligned_cols=94  Identities=13%  Similarity=0.037  Sum_probs=62.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC---CeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF---DDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||-. .+.|..+..+++....+|++++.++...+.+++....   -.++..+-. ++     ....+.+|+|+..
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~-~~-----~~~~~~fD~v~~~  114 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVR-KL-----DFPSASFDVVLEK  114 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTT-SC-----CSCSSCEEEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchh-cC-----CCCCCcccEEEEC
Confidence            678899988 6779888888887323999999999998888843321   111111111 11     1122379999853


Q ss_pred             CC----------------------hHHHHHHHHhhccCcEEEEEcc
Q 043295          111 VG----------------------GEMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       111 ~g----------------------~~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      ..                      ...+..+.+.|+++|+++....
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          115 GTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             SHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            21                      1356777889999999998764

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=95.37  E-value=0.13  Score=38.18  Aligned_cols=84  Identities=11%  Similarity=0.114  Sum_probs=56.5

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChHH
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEM  115 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~  115 (223)
                      .+|.|.  |.+|...+......|..|.+.++++++.+.+.+++|...   +.   ++.+.+.     ..|+|+-|+....
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~---~~~~~~~-----~~D~Vi~~v~~~~   72 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPY---AM---SHQDLID-----QVDLVILGIKPQL   72 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCB---CS---SHHHHHH-----TCSEEEECSCGGG
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEe---eC---CHHHHHh-----cCCEEEEEeCcHh
Confidence            367777  889988887777778899999999888877764567532   11   3333332     3788888887655


Q ss_pred             HHHHHHhhccCcEEEEE
Q 043295          116 LEAAVANMNLFGRVAAC  132 (223)
Q Consensus       116 ~~~~~~~l~~~G~~v~~  132 (223)
                      ....+..+.++..++..
T Consensus        73 ~~~v~~~l~~~~~vv~~   89 (259)
T 2ahr_A           73 FETVLKPLHFKQPIISM   89 (259)
T ss_dssp             HHHHHTTSCCCSCEEEC
T ss_pred             HHHHHHHhccCCEEEEe
Confidence            55566666655555544

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.35  E-value=0.052  Score=41.86  Aligned_cols=73  Identities=19%  Similarity=0.161  Sum_probs=48.1

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh----CC--Cee--eecCCcccHHHHHHHhCCCC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL----GF--DDA--FNYKEETDLKATLKRYFPDG  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~----g~--~~~--~~~~~~~~~~~~i~~~~~~~  103 (223)
                      .++.+|||+   |.+|..+++.+...|++|++++++..+.+.+.+.+    +.  ..+  .|..+. +   .+.+... +
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~-~---~~~~~~~-~   83 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQ-G---AYDEVIK-G   83 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTST-T---TTTTTTT-T
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcCh-H---HHHHHHc-C
Confidence            456899999   89999999888888999999999887765554221    21  111  233322 1   1222222 5


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+||.+.+
T Consensus        84 ~d~vih~A~   92 (342)
T 1y1p_A           84 AAGVAHIAS   92 (342)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEeCC
Confidence            999999886

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=95.35  E-value=0.13  Score=38.24  Aligned_cols=91  Identities=15%  Similarity=0.115  Sum_probs=62.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .++.+||-. +|.|..+..+++. |.+|++++.++.-.+.++ +.....++..+-. ++     ....+.+|+|+....-
T Consensus        53 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~-~~~~~~~~~~d~~-~~-----~~~~~~fD~v~~~~~~  124 (260)
T 2avn_A           53 KNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAR-EKGVKNVVEAKAE-DL-----PFPSGAFEAVLALGDV  124 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHH-HHTCSCEEECCTT-SC-----CSCTTCEEEEEECSSH
T ss_pred             CCCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHH-hhcCCCEEECcHH-HC-----CCCCCCEEEEEEcchh
Confidence            577888888 8889988888876 889999999999888888 4433222221111 11     0112369998864321


Q ss_pred             --------HHHHHHHHhhccCcEEEEEc
Q 043295          114 --------EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       114 --------~~~~~~~~~l~~~G~~v~~g  133 (223)
                              ..+..+.++|+++|.++...
T Consensus       125 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          125 LSYVENKDKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             HHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhccccHHHHHHHHHHHcCCCeEEEEEe
Confidence                    24677788999999998754

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=95.34  E-value=0.7  Score=35.55  Aligned_cols=134  Identities=11%  Similarity=0.057  Sum_probs=71.9

Q ss_pred             EEEEE--CchHHHH-H-HHHHHcCCeEEEE-ecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           39 KVFVS--GAYGHLV-G-QYAKLGGCYVVGS-AGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        39 ~vlI~--g~vG~~a-~-qla~~~g~~v~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      +|.|.  |.+|... + .+.+ .+.+++++ ++++++.+.+.+++|...++  .   ++.+.+.+   ..+|+|+.|+..
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~~~~~~~~g~~~~~--~---~~~~~l~~---~~~D~V~i~tp~   72 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYATENGIGKSV--T---SVEELVGD---PDVDAVYVSTTN   72 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHHHHHHHHTTCSCCB--S---CHHHHHTC---TTCCEEEECSCG
T ss_pred             eEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHHHHHHHHcCCCccc--C---CHHHHhcC---CCCCEEEEeCCh
Confidence            46677  8888765 5 4444 78888765 45666665555477764332  1   34333321   269999999986


Q ss_pred             -HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHH-hhcceE-EeeeccCccchHHHHHHHHHHHHHcCCCCcc
Q 043295          114 -EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIV-YKRIKI-QGFLSTDHFDLHQDFISMTCDALRAGKIQPL  190 (223)
Q Consensus       114 -~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~  190 (223)
                       .+...+..++..| +.|.+..+...+.   .....+.... .+++.+ .++..     .+...+..+.+++++|.+-..
T Consensus        73 ~~h~~~~~~al~~G-k~v~~ekP~~~~~---~~~~~l~~~a~~~g~~~~~~~~~-----r~~p~~~~~~~~i~~g~iG~i  143 (332)
T 2glx_A           73 ELHREQTLAAIRAG-KHVLCEKPLAMTL---EDAREMVVAAREAGVVLGTNHHL-----RNAAAHRAMRDAIAEGRIGRP  143 (332)
T ss_dssp             GGHHHHHHHHHHTT-CEEEECSSSCSSH---HHHHHHHHHHHHHTCCEEECCCG-----GGSHHHHHHHHHHHTTTTSSE
T ss_pred             hHhHHHHHHHHHCC-CeEEEeCCCcCCH---HHHHHHHHHHHHcCCEEEEeehh-----hcCHHHHHHHHHHHcCCCCCe
Confidence             4666677777764 5555543321100   0000011111 123332 22221     123457778888888887543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.30  E-value=0.17  Score=36.50  Aligned_cols=74  Identities=15%  Similarity=-0.048  Sum_probs=51.1

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChHH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEM  115 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~  115 (223)
                      +|+|.  |.+|..+++.+...|.+|+++++++++.+.+.+..|... +..+..  ..+.+++..-.++|+++-+++.+.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~-i~gd~~--~~~~l~~a~i~~ad~vi~~~~~d~   77 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATI-IHGDGS--HKEILRDAEVSKNDVVVILTPRDE   77 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEE-EESCTT--SHHHHHHHTCCTTCEEEECCSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeE-EEcCCC--CHHHHHhcCcccCCEEEEecCCcH
Confidence            46777  888988888888889999999999998887663556533 222221  123344432237999999998754

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=95.30  E-value=0.038  Score=41.65  Aligned_cols=92  Identities=18%  Similarity=0.114  Sum_probs=62.8

Q ss_pred             ccccchhhHHHHHHHHh--hCCCEEEEE--C-chHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           18 GAGTSGFTAYVGFYEIS--QKGEKVFVS--G-AYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        18 ~l~~~~~ta~~~l~~~~--~~g~~vlI~--g-~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      -+||+...+...+.+..  -.|.+++|.  | .+|.-+++++...  |++|+...+..                    . 
T Consensus       137 ~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------------~-  195 (281)
T 2c2x_A          137 PLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------------R-  195 (281)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------------S-
T ss_pred             CCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------------h-
Confidence            34444444555555555  678999999  5 4799999999988  88988764221                    1 


Q ss_pred             cHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           91 DLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        91 ~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      ++.+.+++     .|++|.++|.+.+ -.-+.++++..++.+|.+.
T Consensus       196 ~L~~~~~~-----ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~r  235 (281)
T 2c2x_A          196 DLPALTRQ-----ADIVVAAVGVAHL-LTADMVRPGAAVIDVGVSR  235 (281)
T ss_dssp             CHHHHHTT-----CSEEEECSCCTTC-BCGGGSCTTCEEEECCEEE
T ss_pred             HHHHHHhh-----CCEEEECCCCCcc-cCHHHcCCCcEEEEccCCC
Confidence            34444433     8999999997543 2334578889999998764

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.30  E-value=0.24  Score=38.89  Aligned_cols=43  Identities=19%  Similarity=0.151  Sum_probs=36.4

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF   80 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~   80 (223)
                      ..+|.|.  |.+|...++.....|.+|++.++++++.+.+. +.|+
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~-~~g~   66 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALE-REGI   66 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-TTTC
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HCCC
Confidence            4578888  99999998888889999999999999888877 5554

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.30  E-value=0.19  Score=40.75  Aligned_cols=91  Identities=12%  Similarity=0.055  Sum_probs=56.3

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee--eecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA--FNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      +.+|+|.  |++|...++.+...|++|++.+++.++.+.+.+.++....  .|..+.    +.+.+... ++|+|++|++
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~----~~l~~~l~-~~DvVIn~a~   77 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDD----AALDAEVA-KHDLVISLIP   77 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCH----HHHHHHHT-TSSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCH----HHHHHHHc-CCcEEEECCc
Confidence            5689999  9999999988888899999999988776655423332111  233222    12222222 5999999998


Q ss_pred             hH-HHHHHHHhhccCcEEEEE
Q 043295          113 GE-MLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       113 ~~-~~~~~~~~l~~~G~~v~~  132 (223)
                      .. .......++.++..++..
T Consensus        78 ~~~~~~i~~a~l~~g~~vvd~   98 (450)
T 1ff9_A           78 YTFHATVIKSAIRQKKHVVTT   98 (450)
T ss_dssp             --CHHHHHHHHHHHTCEEEES
T ss_pred             cccchHHHHHHHhCCCeEEEe
Confidence            53 323344556665555544

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.30  E-value=0.045  Score=42.85  Aligned_cols=93  Identities=20%  Similarity=0.214  Sum_probs=58.9

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC--------------cccH-HHHHHH
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE--------------ETDL-KATLKR   98 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--------------~~~~-~~~i~~   98 (223)
                      +|++|.|.  |.||..+++.++..|++|++.+.++.+.+..+ ++|++.+ +..+              ...+ .+.+..
T Consensus       174 ~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~-~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~~~  251 (355)
T 1c1d_A          174 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAV-ALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVART  251 (355)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHH-hcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHHhh
Confidence            57899999  99999999999999999998887766655555 6776433 1110              0000 111111


Q ss_pred             hCCCCccEEEcCCChHHH-HHHHHhhccCcEEEEEc
Q 043295           99 YFPDGIDVYFDNVGGEML-EAAVANMNLFGRVAACG  133 (223)
Q Consensus        99 ~~~~~~d~vid~~g~~~~-~~~~~~l~~~G~~v~~g  133 (223)
                      .   +.++|+++..++.. ..+.+.|..+|.++.-+
T Consensus       252 l---k~~iVie~AN~p~t~~eA~~~L~~~gIlv~Pd  284 (355)
T 1c1d_A          252 L---DCSVVAGAANNVIADEAASDILHARGILYAPD  284 (355)
T ss_dssp             C---CCSEECCSCTTCBCSHHHHHHHHHTTCEECCH
T ss_pred             C---CCCEEEECCCCCCCCHHHHHHHHhCCEEEECC
Confidence            1   36677777765432 35567777777666533

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.28  E-value=0.012  Score=44.08  Aligned_cols=74  Identities=14%  Similarity=0.129  Sum_probs=47.1

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe-eeecCCcccHHHHHHHhCC--CCccEEE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD-AFNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      -.++++||+   |++|.+.++.....|++|+.++++.++.+    ...+.. ..|-.+.++..+.+.+...  +++|+++
T Consensus        26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv  101 (260)
T 3un1_A           26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA----DPDIHTVAGDISKPETADRIVREGIERFGRIDSLV  101 (260)
T ss_dssp             TTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS----STTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc----cCceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEE
Confidence            567899999   89999999988889999999998765422    111111 1233333123222332221  2699999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus       102 ~nAg  105 (260)
T 3un1_A          102 NNAG  105 (260)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9886

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.26  E-value=0.28  Score=37.36  Aligned_cols=44  Identities=18%  Similarity=0.050  Sum_probs=37.6

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD   82 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~   82 (223)
                      .+|.|.  |.+|...++.....|.+|++.++++++.+.+. +.|...
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~   53 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLL-AEGACG   53 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCSE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-HcCCcc
Confidence            578888  99999999888889999999999999988888 667643

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=95.26  E-value=0.092  Score=38.78  Aligned_cols=91  Identities=9%  Similarity=-0.035  Sum_probs=63.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCC-CeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGF-DDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      .++.+||-. .|.|..+..+++.. +.+|++++.++...+.++ +... -.....+-. ++    .  ..+.+|+|+...
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~-~~~~~~~~~~~d~~-~~----~--~~~~fD~v~~~~  103 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAA-DRLPNTNFGKADLA-TW----K--PAQKADLLYANA  103 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHH-HHSTTSEEEECCTT-TC----C--CSSCEEEEEEES
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HhCCCcEEEECChh-hc----C--ccCCcCEEEEeC
Confidence            678888888 78899999998876 779999999999988888 4322 122211111 11    1  123799998644


Q ss_pred             C-----h--HHHHHHHHhhccCcEEEEEc
Q 043295          112 G-----G--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 g-----~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      .     .  ..+..+.++|++||.++...
T Consensus       104 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A          104 VFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             CGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             chhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            2     1  35677788999999998764

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=95.25  E-value=0.054  Score=37.27  Aligned_cols=91  Identities=9%  Similarity=-0.073  Sum_probs=64.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-  112 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-  112 (223)
                      .++.+||-. ++.|..+..+++... +|++++.++...+.++ +... .+ ..... +     .....+.+|+|+.... 
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~-~~~~-~v-~~~~~-d-----~~~~~~~~D~v~~~~~l   85 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVK-EKFD-SV-ITLSD-P-----KEIPDNSVDFILFANSF   85 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHH-HHCT-TS-EEESS-G-----GGSCTTCEEEEEEESCS
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHH-HhCC-Cc-EEEeC-C-----CCCCCCceEEEEEccch
Confidence            778888888 788998888888775 9999999999988888 4421 11 11112 2     1222337999975332 


Q ss_pred             ----h--HHHHHHHHhhccCcEEEEEccc
Q 043295          113 ----G--EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       113 ----~--~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                          .  ..+..+.+.|+++|+++.....
T Consensus        86 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  114 (170)
T 3i9f_A           86 HDMDDKQHVISEVKRILKDDGRVIIIDWR  114 (170)
T ss_dssp             TTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hcccCHHHHHHHHHHhcCCCCEEEEEEcC
Confidence                1  3578888999999999987643

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=95.25  E-value=0.056  Score=38.69  Aligned_cols=89  Identities=9%  Similarity=-0.005  Sum_probs=60.3

Q ss_pred             EEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCC-ee--eecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           39 KVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFD-DA--FNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        39 ~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~~--~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      +||-. ++.|..+..+++..+.+|++++.++...+.+++.   .+.. .+  +..+-. ++     ....+.+|+|+..-
T Consensus        46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~-----~~~~~~~D~v~~~~  119 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVH-NI-----PIEDNYADLIVSRG  119 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTT-BC-----SSCTTCEEEEEEES
T ss_pred             EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHH-HC-----CCCcccccEEEECc
Confidence            77777 8889999999998778999999999888777732   2322 11  111111 10     01123699998643


Q ss_pred             C-------hHHHHHHHHhhccCcEEEEEc
Q 043295          112 G-------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 g-------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      .       ...+..+.+.|+++|.++...
T Consensus       120 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          120 SVFFWEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             CGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence            2       236788889999999998865

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.24  E-value=0.078  Score=39.85  Aligned_cols=97  Identities=14%  Similarity=0.135  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHh
Q 043295           24 FTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRY   99 (223)
Q Consensus        24 ~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~   99 (223)
                      -|=+.++.+.-  ..+++++|.  |++|.+++..+...|.+|+...|+.++.+.+. ++|.. ...+.+   +.      
T Consensus       103 NTD~~Gf~~~L~~~~~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~~~-~~~~~~---l~------  171 (269)
T 3phh_A          103 NTDALGFYLSLKQKNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLGCD-CFMEPP---KS------  171 (269)
T ss_dssp             CCHHHHHHHHCC---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHTCE-EESSCC---SS------
T ss_pred             cChHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCe-EecHHH---hc------
Confidence            45555555443  238899999  99999999888889999999999999888777 78742 333222   11      


Q ss_pred             CCCCccEEEcCCChH-----HHH--HHHHhhccCcEEEEEcc
Q 043295          100 FPDGIDVYFDNVGGE-----MLE--AAVANMNLFGRVAACGV  134 (223)
Q Consensus       100 ~~~~~d~vid~~g~~-----~~~--~~~~~l~~~G~~v~~g~  134 (223)
                         .+|+||+|+...     .+.  .....++++..++.+..
T Consensus       172 ---~~DiVInaTp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY  210 (269)
T 3phh_A          172 ---AFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAY  210 (269)
T ss_dssp             ---CCSEEEECCTTCCCCSCSSCHHHHHHHHHHCSEEEESCC
T ss_pred             ---cCCEEEEcccCCCCCCCCCChHHHHhhCCCCCEEEEeCC
Confidence               499999988631     121  12225778888877754

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=95.22  E-value=0.14  Score=40.72  Aligned_cols=94  Identities=16%  Similarity=0.111  Sum_probs=64.2

Q ss_pred             CCCEEEEE-CchHHHHHHHHHHc-CC-eEEEEecCHHHHHHHHH---hhCCCe--eeecCCcccHHHHHH-HhCCCCccE
Q 043295           36 KGEKVFVS-GAYGHLVGQYAKLG-GC-YVVGSAGTNEKVAILKE---KLGFDD--AFNYKEETDLKATLK-RYFPDGIDV  106 (223)
Q Consensus        36 ~g~~vlI~-g~vG~~a~qla~~~-g~-~v~~~~~~~~~~~~~~~---~~g~~~--~~~~~~~~~~~~~i~-~~~~~~~d~  106 (223)
                      +|.+||=. ++.|..++.+++.. |+ +|++++.+++..+.+++   ..|.+.  +--.. . +..+.+. +. ++.||+
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~-~-Da~~~l~~~~-~~~fD~  128 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHG-M-EANFFLRKEW-GFGFDY  128 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC-S-CHHHHHHSCC-SSCEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEe-C-CHHHHHHHhh-CCCCcE
Confidence            57777776 88899999999875 65 89999999998877764   245532  32122 2 3444444 32 336997


Q ss_pred             E-EcCCCh--HHHHHHHHhhccCcEEEEE
Q 043295          107 Y-FDNVGG--EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       107 v-id~~g~--~~~~~~~~~l~~~G~~v~~  132 (223)
                      | +|.-|.  +.+..++.+++++|.+...
T Consensus       129 V~lDP~g~~~~~l~~a~~~Lk~gGll~~t  157 (392)
T 3axs_A          129 VDLDPFGTPVPFIESVALSMKRGGILSLT  157 (392)
T ss_dssp             EEECCSSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEECCCcCHHHHHHHHHHHhCCCCEEEEE
Confidence            7 566553  5788889999999966544

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=95.21  E-value=0.066  Score=38.03  Aligned_cols=60  Identities=15%  Similarity=0.262  Sum_probs=40.7

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      +++|+   |++|...++.+. .|++|+++++++.           ....|..+.+.+.+.+.+.  +++|+++.+.|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-----------~~~~D~~~~~~~~~~~~~~--~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-----------DVTVDITNIDSIKKMYEQV--GKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-----------SEECCTTCHHHHHHHHHHH--CCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-----------ceeeecCCHHHHHHHHHHh--CCCCEEEECCC
Confidence            78999   899999998877 8999999997753           1122333331333333333  36899998876

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=95.19  E-value=0.039  Score=41.11  Aligned_cols=97  Identities=13%  Similarity=0.059  Sum_probs=62.6

Q ss_pred             h-CCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCC-eeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 Q-KGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFD-DAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~-~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      . ++++||=. .|.|..+..+++....+|++++.++...+.+++.   .+.. .+- .... ++.+.......+.||+|+
T Consensus        47 ~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~-~~~~-D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           47 PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIE-IIEY-DLKKITDLIPKERADIVT  124 (259)
T ss_dssp             CSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEE-EECS-CGGGGGGTSCTTCEEEEE
T ss_pred             CCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEE-EEEC-cHHHhhhhhccCCccEEE
Confidence            5 78888777 8889988888888666999999999887777632   2432 121 1111 221111112234799998


Q ss_pred             cCCC---------------------------hHHHHHHHHhhccCcEEEEEc
Q 043295          109 DNVG---------------------------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       109 d~~g---------------------------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ....                           ...+..+.++|+++|+++.+.
T Consensus       125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  176 (259)
T 3lpm_A          125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH  176 (259)
T ss_dssp             ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence            6211                           124567788999999999864

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.19  E-value=0.24  Score=38.65  Aligned_cols=90  Identities=17%  Similarity=0.091  Sum_probs=60.1

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChH
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGE  114 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~  114 (223)
                      ..+|.|.  |.+|...+...+..|.+|++.++++++.+.+. ++|+...-      +..+.+.+.. .+.|+||-|+...
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~-~~G~~~~~------~~~e~~~~a~-~~aDlVilavP~~   79 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAV-DEGFDVSA------DLEATLQRAA-AEDALIVLAVPMT   79 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHH-HTTCCEES------CHHHHHHHHH-HTTCEEEECSCHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeeeC------CHHHHHHhcc-cCCCEEEEeCCHH
Confidence            3568888  99999999988889999999999999988888 88873221      3333333220 1368888888854


Q ss_pred             HHHHHHH---hhccCcEEEEEcc
Q 043295          115 MLEAAVA---NMNLFGRVAACGV  134 (223)
Q Consensus       115 ~~~~~~~---~l~~~G~~v~~g~  134 (223)
                      .....+.   -++++..++.++.
T Consensus        80 ~~~~vl~~l~~~~~~~iv~Dv~S  102 (341)
T 3ktd_A           80 AIDSLLDAVHTHAPNNGFTDVVS  102 (341)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHHHccCCCCEEEEcCC
Confidence            3333222   2355655666654

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=95.19  E-value=0.14  Score=36.78  Aligned_cols=100  Identities=19%  Similarity=0.175  Sum_probs=66.2

Q ss_pred             HHHHh-hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHh---hCCCee--eecCCcccHHHHHHHhC
Q 043295           30 FYEIS-QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEK---LGFDDA--FNYKEETDLKATLKRYF  100 (223)
Q Consensus        30 l~~~~-~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~---~g~~~~--~~~~~~~~~~~~i~~~~  100 (223)
                      +.... .++.+||-. ++.|..+..+++..  +.+|++++.++...+.+++.   .+...+  +..+-. ++     ...
T Consensus        30 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~-----~~~  103 (219)
T 3dh0_A           30 LKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEEN-KI-----PLP  103 (219)
T ss_dssp             HHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTT-BC-----SSC
T ss_pred             HHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccc-cC-----CCC
Confidence            33344 778898888 78899999999887  46999999999887777633   233222  111111 11     011


Q ss_pred             CCCccEEEcCCC-------hHHHHHHHHhhccCcEEEEEccc
Q 043295          101 PDGIDVYFDNVG-------GEMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       101 ~~~~d~vid~~g-------~~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      .+.+|+|+....       ...+..+.+.|+++|.++.....
T Consensus       104 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  145 (219)
T 3dh0_A          104 DNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWK  145 (219)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEec
Confidence            236999975432       13678888999999999987643

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=95.19  E-value=0.06  Score=40.10  Aligned_cols=77  Identities=16%  Similarity=0.211  Sum_probs=47.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH-HHHHHHHhh---CCC-e--eeecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE-KVAILKEKL---GFD-D--AFNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~-~~~~~~~~~---g~~-~--~~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .+++++|+   |++|.+.++.....|++|+.++++.. ..+.+.+.+   +.. .  ..|-.+.+++.+.+.+...  ++
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   85 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGK   85 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46789999   89999999888888999999876543 344444222   211 1  1344443233333333222  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++.+.|
T Consensus        86 id~lv~~Ag   94 (264)
T 3i4f_A           86 IDFLINNAG   94 (264)
T ss_dssp             CCEEECCCC
T ss_pred             CCEEEECCc
Confidence            999999998

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=95.15  E-value=0.27  Score=36.84  Aligned_cols=91  Identities=16%  Similarity=0.180  Sum_probs=62.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-  112 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-  112 (223)
                      .++.+||-. +|.|..+..+++ .+.+|++++.++...+.+++.+..-.....+-. ++    .  ..+.+|+|+.... 
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~----~--~~~~fD~v~~~~~l  127 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNYPHLHFDVADAR-NF----R--VDKPLDAVFSNAML  127 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTT-TC----C--CSSCEEEEEEESCG
T ss_pred             CCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhCCCCEEEECChh-hC----C--cCCCcCEEEEcchh
Confidence            678898888 888999999988 788999999999988888833311111111111 11    0  1236999875432 


Q ss_pred             ----h--HHHHHHHHhhccCcEEEEEc
Q 043295          113 ----G--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       113 ----~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                          .  ..+..+.+.|+|||.++...
T Consensus       128 ~~~~d~~~~l~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          128 HWVKEPEAAIASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             GGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhCcCHHHHHHHHHHhcCCCcEEEEEe
Confidence                1  35778889999999988754

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=95.14  E-value=0.25  Score=36.52  Aligned_cols=74  Identities=12%  Similarity=0.166  Sum_probs=50.5

Q ss_pred             EEEEE---CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           39 KVFVS---GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      +|.|.   |.+|...++.+... +.++++.....+..+.+. ..+++.++|...++...+.+......|.++|+.++|-
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~-~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~   79 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLT-DGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGF   79 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHH-HTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHh-ccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCC
Confidence            46677   67888888887755 889888775544444444 3467888888776445555555444478899988873

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=95.12  E-value=0.03  Score=42.33  Aligned_cols=97  Identities=16%  Similarity=0.094  Sum_probs=64.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhC-CCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYF-PDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~-~~~~d~vid  109 (223)
                      +++++||=. .+.|..++.+++....+|++++.++...+.+++.   .|....+..... +.    .+.. ++.+|+|+-
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~-D~----~~~~~~~~fD~Vi~  198 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM-DN----RDFPGENIADRILM  198 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-CT----TTCCCCSCEEEEEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEEC-CH----HHhcccCCccEEEE
Confidence            678888877 8889888888887544799999999988777632   244321111111 11    1111 237997764


Q ss_pred             -CCCh--HHHHHHHHhhccCcEEEEEcccc
Q 043295          110 -NVGG--EMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       110 -~~g~--~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                       ....  ..+..+.++|++||.++......
T Consensus       199 ~~p~~~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          199 GYVVRTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             CCCSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCchhHHHHHHHHHHHCCCCeEEEEEEeec
Confidence             3322  46888999999999999876543

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=95.11  E-value=0.82  Score=35.59  Aligned_cols=88  Identities=15%  Similarity=0.026  Sum_probs=55.5

Q ss_pred             CEEEEE--CchHH-HHHHHHHHc-CCeEEEEe-cCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           38 EKVFVS--GAYGH-LVGQYAKLG-GCYVVGSA-GTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        38 ~~vlI~--g~vG~-~a~qla~~~-g~~v~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -+|.|.  |.+|. ..+...+.. +.++++++ +++++.+.+.+++|...+     . ++.+.+.+   ..+|+|+.|+.
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~-----~-~~~~ll~~---~~~D~V~i~tp   98 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPV-----E-GYPALLER---DDVDAVYVPLP   98 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEE-----E-SHHHHHTC---TTCSEEEECCC
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCc-----C-CHHHHhcC---CCCCEEEECCC
Confidence            367777  88887 455555545 77888665 555666655547787543     1 34443321   26999999998


Q ss_pred             h-HHHHHHHHhhccCcEEEEEccc
Q 043295          113 G-EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       113 ~-~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      . .+...+..++..| +-|.+..|
T Consensus        99 ~~~h~~~~~~al~aG-k~Vl~EKP  121 (350)
T 3rc1_A           99 AVLHAEWIDRALRAG-KHVLAEKP  121 (350)
T ss_dssp             GGGHHHHHHHHHHTT-CEEEEESS
T ss_pred             cHHHHHHHHHHHHCC-CcEEEeCC
Confidence            6 4677777777655 44666544

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.10  E-value=0.098  Score=39.31  Aligned_cols=90  Identities=9%  Similarity=-0.033  Sum_probs=60.4

Q ss_pred             ccchhhHHHHHHHHhhCCCEEEEE--C-chHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHH
Q 043295           20 GTSGFTAYVGFYEISQKGEKVFVS--G-AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATL   96 (223)
Q Consensus        20 ~~~~~ta~~~l~~~~~~g~~vlI~--g-~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i   96 (223)
                      ||+..-....+.+..-.|.+++|.  | .+|..+++++...|++|+...+..                    . ++.+.+
T Consensus       133 PcTp~gv~~lL~~~~l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t--------------------~-~L~~~~  191 (276)
T 3ngx_A          133 PATPRAVIDIMDYYGYHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT--------------------K-DIGSMT  191 (276)
T ss_dssp             CHHHHHHHHHHHHHTCCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------------S-CHHHHH
T ss_pred             CCcHHHHHHHHHHhCcCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc--------------------c-cHHHhh
Confidence            333333333443333578999999  4 489999999999999988765321                    1 444455


Q ss_pred             HHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           97 KRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        97 ~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      ++     .|++|.++|.+.+ -.-+.+++|..++.+|...
T Consensus       192 ~~-----ADIVI~Avg~p~~-I~~~~vk~GavVIDvgi~~  225 (276)
T 3ngx_A          192 RS-----SKIVVVAVGRPGF-LNREMVTPGSVVIDVGINY  225 (276)
T ss_dssp             HH-----SSEEEECSSCTTC-BCGGGCCTTCEEEECCCEE
T ss_pred             cc-----CCEEEECCCCCcc-ccHhhccCCcEEEEeccCc
Confidence            44     8999999986432 1224578999999998754

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=95.09  E-value=0.47  Score=33.93  Aligned_cols=94  Identities=17%  Similarity=0.188  Sum_probs=63.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHh---hCCCee--eecCCcccHHHHHHHhC-CCCccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEK---LGFDDA--FNYKEETDLKATLKRYF-PDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~---~g~~~~--~~~~~~~~~~~~i~~~~-~~~~d~  106 (223)
                      .++.+||=. .|.|..+..+++.. +.++++++.++...+.+++.   .|.+.+  +..+-. +    +.+.. .+.+|.
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~-~----~~~~~~~~~~D~  114 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGS-D----LTDYFEDGEIDR  114 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSS-C----GGGTSCTTCCSE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHH-H----HHhhcCCCCCCE
Confidence            567788777 88999999999987 67999999999887777632   344322  222111 1    22222 236888


Q ss_pred             EEcCCCh---------------HHHHHHHHhhccCcEEEEEc
Q 043295          107 YFDNVGG---------------EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       107 vid~~g~---------------~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+-....               ..+..+.+.|+++|.++...
T Consensus       115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  156 (214)
T 1yzh_A          115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  156 (214)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence            8644332               46778888999999987753

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.08  E-value=0.048  Score=41.00  Aligned_cols=92  Identities=20%  Similarity=0.212  Sum_probs=57.7

Q ss_pred             EEEEE---CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           39 KVFVS---GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      +|||+   |.+|...++.+...  |++|+++++++.+.+.+. ..+...+ .|..+.    +.+.+... ++|+||.+.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~-~~~~~~~~~D~~d~----~~l~~~~~-~~d~vi~~a~   75 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLA-DQGVEVRHGDYNQP----ESLQKAFA-GVSKLLFISG   75 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHH-HTTCEEEECCTTCH----HHHHHHTT-TCSEEEECCC
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHh-hcCCeEEEeccCCH----HHHHHHHh-cCCEEEEcCC
Confidence            57888   88898888877777  899999999887766555 4444322 233332    23444433 5899999887


Q ss_pred             h---H-----HHHHHHHhhccC--cEEEEEcccc
Q 043295          113 G---E-----MLEAAVANMNLF--GRVAACGVIS  136 (223)
Q Consensus       113 ~---~-----~~~~~~~~l~~~--G~~v~~g~~~  136 (223)
                      .   .     .....++.+...  ++++.++...
T Consensus        76 ~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~  109 (287)
T 2jl1_A           76 PHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAF  109 (287)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred             CCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            3   1     122334444333  4888887644

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=95.08  E-value=0.022  Score=42.69  Aligned_cols=71  Identities=18%  Similarity=0.287  Sum_probs=45.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-eeeecCCcccHHHHHHHhCC--CCccEEEc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DAFNYKEETDLKATLKRYFP--DGIDVYFD  109 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~--~~~d~vid  109 (223)
                      .++++||+   |++|.+.++.....|++|+.+++++++      .-.+. ...|-.+.+++.+.+.+...  +++|++++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG------EAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc------CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            46889999   899999999888899999999987644      11111 11243333123322332221  26999999


Q ss_pred             CCC
Q 043295          110 NVG  112 (223)
Q Consensus       110 ~~g  112 (223)
                      +.|
T Consensus        81 ~Ag   83 (264)
T 2dtx_A           81 NAG   83 (264)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            887

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=95.02  E-value=0.081  Score=37.75  Aligned_cols=98  Identities=12%  Similarity=-0.052  Sum_probs=59.6

Q ss_pred             CCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCC--CeeeecCCcccHHHHHHHhCCCC-ccEEE
Q 043295           36 KGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGF--DDAFNYKEETDLKATLKRYFPDG-IDVYF  108 (223)
Q Consensus        36 ~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~--~~~~~~~~~~~~~~~i~~~~~~~-~d~vi  108 (223)
                      ++.+||=. .|.|..+..+++....+|++++.+++..+.+++.   .|.  +.+ ..... +..+......++. ||+|+
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v-~~~~~-d~~~~~~~~~~~~~fD~I~  130 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQA-EVINQ-SSLDFLKQPQNQPHFDVVF  130 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTE-EEECS-CHHHHTTSCCSSCCEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccce-EEEEC-CHHHHHHhhccCCCCCEEE
Confidence            78888777 7889888876665445999999999888777632   343  222 11122 3333222212346 99987


Q ss_pred             cCCC----h--HHHHHH--HHhhccCcEEEEEccc
Q 043295          109 DNVG----G--EMLEAA--VANMNLFGRVAACGVI  135 (223)
Q Consensus       109 d~~g----~--~~~~~~--~~~l~~~G~~v~~g~~  135 (223)
                      -...    .  ..+...  .++|+++|.++.....
T Consensus       131 ~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          131 LDPPFHFNLAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             ECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             ECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            4332    1  234444  3458999998876543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.01  E-value=0.2  Score=38.43  Aligned_cols=84  Identities=15%  Similarity=0.033  Sum_probs=55.1

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC-hH
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-GE  114 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-~~  114 (223)
                      .+|.|.  |.+|...++.....|.+|+..++++++.+.+. +.|...   ..   +..+.+.     +.|+|+.|+. ..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~---~~---~~~~~~~-----~~DvVi~av~~~~   98 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI-QEGARL---GR---TPAEVVS-----TCDITFACVSDPK   98 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHH-HTTCEE---CS---CHHHHHH-----HCSEEEECCSSHH
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HcCCEE---cC---CHHHHHh-----cCCEEEEeCCCHH
Confidence            568888  99999888888888999999999988888777 566421   11   2223332     2678888887 34


Q ss_pred             HHHHHH-------HhhccCcEEEEEc
Q 043295          115 MLEAAV-------ANMNLFGRVAACG  133 (223)
Q Consensus       115 ~~~~~~-------~~l~~~G~~v~~g  133 (223)
                      .....+       ..+.++..++.++
T Consensus        99 ~~~~v~~~~~~~~~~l~~~~~vv~~s  124 (316)
T 2uyy_A           99 AAKDLVLGPSGVLQGIRPGKCYVDMS  124 (316)
T ss_dssp             HHHHHHHSTTCGGGGCCTTCEEEECS
T ss_pred             HHHHHHcCchhHhhcCCCCCEEEECC
Confidence            444443       2344555566554

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=95.01  E-value=0.02  Score=42.26  Aligned_cols=72  Identities=15%  Similarity=0.113  Sum_probs=44.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHH-----HHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKAT-----LKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----i~~~~~--~~~d  105 (223)
                      .++++||+   |++|.+.++.... |++|+.+++++++.+.+. +..-...+..    ++.+.     +.+...  +++|
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~-~~~~~~~~~~----D~~~~~~~~~~~~~~~~~~~id   77 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALA-EIEGVEPIES----DIVKEVLEEGGVDKLKNLDHVD   77 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHH-TSTTEEEEEC----CHHHHHHTSSSCGGGTTCSCCS
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHH-hhcCCcceec----ccchHHHHHHHHHHHHhcCCCC
Confidence            46789999   7899888876655 899999999998888777 4322122211    22221     111112  2699


Q ss_pred             EEEcCCCh
Q 043295          106 VYFDNVGG  113 (223)
Q Consensus       106 ~vid~~g~  113 (223)
                      +++++.|.
T Consensus        78 ~lv~~Ag~   85 (245)
T 3e9n_A           78 TLVHAAAV   85 (245)
T ss_dssp             EEEECC--
T ss_pred             EEEECCCc
Confidence            99999873

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=95.00  E-value=0.31  Score=36.26  Aligned_cols=98  Identities=14%  Similarity=0.064  Sum_probs=63.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhC------CC---eeeecCCcccH-HHHHHHhCC-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLG------FD---DAFNYKEETDL-KATLKRYFP-  101 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g------~~---~~~~~~~~~~~-~~~i~~~~~-  101 (223)
                      .++.+||=. .|.|..+..+++.. +.+|++++.+++..+.+++.+.      ..   .++..+-. ++ .....+... 
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~-~~~~~~~~~~~~~  113 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVT-LRAKARVEAGLPD  113 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTT-CCHHHHHHTTCCT
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHH-HHhhhhhhhccCC
Confidence            567777777 78899999999887 5699999999998888874322      21   12222211 22 111112222 


Q ss_pred             CCccEEEcCCC-------------------------hHHHHHHHHhhccCcEEEEEc
Q 043295          102 DGIDVYFDNVG-------------------------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       102 ~~~d~vid~~g-------------------------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +.||+|+-...                         ...+..+.++|+++|+++.+-
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            37999886410                         124667778999999998764

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.97  E-value=0.043  Score=40.70  Aligned_cols=76  Identities=26%  Similarity=0.286  Sum_probs=45.7

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEe-cCHHHH----HHHHHhhCCCee---eecCCcccHHH---HHHHhC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSA-GTNEKV----AILKEKLGFDDA---FNYKEETDLKA---TLKRYF  100 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~-~~~~~~----~~~~~~~g~~~~---~~~~~~~~~~~---~i~~~~  100 (223)
                      .+++++||+   |++|.+.++.....|++|+.++ ++..+.    +.++ ..+....   .|-.+.++..+   .+.+..
T Consensus        11 ~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (256)
T 3ezl_A           11 MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQK-ALGFDFYASEGNVGDWDSTKQAFDKVKAEV   89 (256)
T ss_dssp             --CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHH-HTTCCCEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH-hcCCeeEEEecCCCCHHHHHHHHHHHHHhc
Confidence            567889999   8999999988888899999887 433332    2233 3343221   23333212222   232322


Q ss_pred             CCCccEEEcCCC
Q 043295          101 PDGIDVYFDNVG  112 (223)
Q Consensus       101 ~~~~d~vid~~g  112 (223)
                       +++|+++++.|
T Consensus        90 -g~id~lv~~Ag  100 (256)
T 3ezl_A           90 -GEIDVLVNNAG  100 (256)
T ss_dssp             -CCEEEEEECCC
T ss_pred             -CCCCEEEECCC
Confidence             36999999887

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.97  E-value=0.034  Score=42.87  Aligned_cols=73  Identities=12%  Similarity=0.133  Sum_probs=44.6

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHH--HHHHHhh----CCCee-eecCCcccHHHHHHHhCCC-C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKV--AILKEKL----GFDDA-FNYKEETDLKATLKRYFPD-G  103 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~--~~~~~~~----g~~~~-~~~~~~~~~~~~i~~~~~~-~  103 (223)
                      +++.+|||+   |.+|..+++.+...|++|++++++..+.  +.+. .+    +...+ .|..+.    +.+.+...+ +
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~----~~~~~~~~~~~   86 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLR-ELGIEGDIQYEDGDMADA----CSVQRAVIKAQ   86 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHH-HTTCGGGEEEEECCTTCH----HHHHHHHHHHC
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchh-hccccCceEEEECCCCCH----HHHHHHHHHcC
Confidence            788999999   8999999988888899999999876431  2232 22    11111 233332    223333223 5


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+||.+.+
T Consensus        87 ~d~Vih~A~   95 (335)
T 1rpn_A           87 PQEVYNLAA   95 (335)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEECcc
Confidence            899999887

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=94.96  E-value=0.027  Score=41.53  Aligned_cols=67  Identities=18%  Similarity=0.179  Sum_probs=41.9

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      +++||+   |++|..+++.....|++|+++++++++.+       .....|-.+.+.+.+.+.+. .+++|++|.+.|
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~-------~~~~~D~~~~~~~~~~~~~~-~~~~d~vi~~Ag   71 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIE-------ADLSTPGGRETAVAAVLDRC-GGVLDGLVCCAG   71 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE-------CCTTSHHHHHHHHHHHHHHH-TTCCSEEEECCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHcc-------ccccCCcccHHHHHHHHHHc-CCCccEEEECCC
Confidence            468888   89999999888888999999998764321       01111211111222223322 247999999887

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=94.96  E-value=0.0058  Score=45.94  Aligned_cols=72  Identities=18%  Similarity=0.222  Sum_probs=45.5

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH---HHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL---KATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~i~~~~~~~~d~vi  108 (223)
                      -.++++||+   |++|.+.++.....|++|+.++++.++.+... .+    ..|-.+.+..   .+.+.+.. +++|+++
T Consensus        26 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~-~~----~~Dv~~~~~~~~~~~~~~~~~-g~iD~lv   99 (266)
T 3uxy_A           26 FEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADL-HL----PGDLREAAYADGLPGAVAAGL-GRLDIVV   99 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSE-EC----CCCTTSHHHHHHHHHHHHHHH-SCCCEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhh-cc----CcCCCCHHHHHHHHHHHHHhc-CCCCEEE
Confidence            467899999   89999999888889999999998755432111 11    1232332112   22222222 3699999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus       100 nnAg  103 (266)
T 3uxy_A          100 NNAG  103 (266)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9887

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=94.95  E-value=0.14  Score=37.25  Aligned_cols=94  Identities=12%  Similarity=0.127  Sum_probs=63.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCC-eeeecCCcccHHHHHHHhCC-CCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFD-DAFNYKEETDLKATLKRYFP-DGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~-~~~d~vid~  110 (223)
                      .++.+||=. +|.|..+..+++.. +.+|++++.++...+.+++.+... .+ ..... +.    .+... +.+|+|+..
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~-d~----~~~~~~~~fD~v~~~  116 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKV-KYIEA-DY----SKYDFEEKYDMVVSA  116 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTE-EEEES-CT----TTCCCCSCEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCE-EEEeC-ch----hccCCCCCceEEEEe
Confidence            567888888 88999999999987 789999999999888888443221 11 11000 11    11111 369988754


Q ss_pred             C-----ChH----HHHHHHHhhccCcEEEEEcc
Q 043295          111 V-----GGE----MLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       111 ~-----g~~----~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .     ..+    .+..+.+.|+|||.++....
T Consensus       117 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  149 (234)
T 3dtn_A          117 LSIHHLEDEDKKELYKRSYSILKESGIFINADL  149 (234)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            3     221    57788899999999988754

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.93  E-value=0.058  Score=40.09  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=27.9

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCH
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTN   68 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~   68 (223)
                      .+.+|+|.  |++|..+++.+...|. +++.+++..
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            45789999  9999999999999998 788887665

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=94.90  E-value=0.65  Score=33.28  Aligned_cols=95  Identities=12%  Similarity=0.079  Sum_probs=62.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHh---hCCCee-eecCCcccHHHHHHHhCC-CCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEK---LGFDDA-FNYKEETDLKATLKRYFP-DGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~---~g~~~~-~~~~~~~~~~~~i~~~~~-~~~d~v  107 (223)
                      .++..||=. .|.|..++.+|+.. +.+|++++.++...+.+++.   .|...+ +-..+   ..+ +..... +.+|.|
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d---~~~-l~~~~~~~~~d~v  112 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNID---ADT-LTDVFEPGEVKRV  112 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCC---GGG-HHHHCCTTSCCEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCC---HHH-HHhhcCcCCcCEE
Confidence            566777766 78999999999986 67999999999887777632   344332 11111   111 222233 368877


Q ss_pred             EcCCC---------------hHHHHHHHHhhccCcEEEEEc
Q 043295          108 FDNVG---------------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       108 id~~g---------------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +-...               ...+..+.+.|++||.++...
T Consensus       113 ~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          113 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             EEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            53221               235788889999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	223
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	4e-18
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	4e-18
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	7e-15
d1tt7a2	167	c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bac	8e-14
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	3e-13
d1o89a2	177	c.2.1.1 (A:116-292) Hypothetical protein YhdH {Esc	5e-12
d1xa0a2	176	c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Ba	2e-10
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	4e-10
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	1e-09
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	6e-09
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	2e-08
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	1e-07
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	4e-07
d1o8ca2	77	c.2.1.1 (A:116-192) Hypothetical protein YhdH {Esc	5e-05
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	5e-05
d1iz0a2	171	c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus	6e-05
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	3e-04
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	7e-04
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	0.002
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	0.003

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.0 bits (188), Expect = 4e-18
 Identities = 46/184 (25%), Positives = 71/184 (38%), Gaps = 12/184 (6%)

Query: 15  FANGA-GTSGFTAYVGFYEISQ----KGEKVFVSGAY---GHLVGQYAKLGGCYVVGSAG 66
           +  GA G  G T+ +G  E         + + VSGA    G L GQ   L GC  V    
Sbjct: 4   YFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGIC 63

Query: 67  TNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLF 126
             ++  +        DA    +  ++   L+   P G+DVYFDNVGG++    ++ MN  
Sbjct: 64  GTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVISQMNEN 123

Query: 127 GRVAACGVISECADASKRAVP----NMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDAL 182
             +  CG IS+         P           + I  + F   ++ D  +  I       
Sbjct: 124 SHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWF 183

Query: 183 RAGK 186
           + GK
Sbjct: 184 KEGK 187

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 76.6 bits (187), Expect = 4e-18
 Identities = 74/174 (42%), Positives = 99/174 (56%), Gaps = 8/174 (4%)

Query: 19  AGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAI 73
            G  G TAY G  E+   + GE V VS   GA G +VGQ AKL GC VVG+AG++EK+A 
Sbjct: 10  IGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAY 69

Query: 74  LKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACG 133
           LK+  GFD AFNYK    L+  LK+  PDG D YFDNVGGE L   ++ M  FG++A CG
Sbjct: 70  LKQI-GFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICG 128

Query: 134 VISE-CADASKRAVPNMIDIVYKRIKIQGFLSTDHF-DLHQDFISMTCDALRAG 185
            IS           P+   I+YK+++I+GF+      D+ +  +      +  G
Sbjct: 129 AISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEG 182

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 68.1 bits (165), Expect = 7e-15
 Identities = 26/185 (14%), Positives = 50/185 (27%), Gaps = 23/185 (12%)

Query: 20  GTSGFTAYVGFYEIS--QKGEKVFV----SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAI 73
             +  TAY+          G+  F+    + A G    Q  KL     +        +  
Sbjct: 10  SVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDE 69

Query: 74  L---KEKLGFDDAFNYKEET-----DLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNL 125
           +    ++LG        +              +       +  + VGG+        +N 
Sbjct: 70  VVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNN 129

Query: 126 FGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHF----DLHQDFISMTCDA 181
            G +   G +S                ++K     GF  T+      +L    ++     
Sbjct: 130 NGLMLTYGGMSFQP-----VTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAW 184

Query: 182 LRAGK 186
              GK
Sbjct: 185 YEEGK 189

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 64.6 bits (156), Expect = 8e-14
 Identities = 37/156 (23%), Positives = 60/156 (38%), Gaps = 16/156 (10%)

Query: 20  GTSGFTAYVGFYEI-----SQKGEKVFVSGAYGH---LVGQYAKLGGCYVVGSAGTNEKV 71
           GT+GFTA +  + +     S +   V V+GA G    +        G  VV S G  E  
Sbjct: 2   GTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA 61

Query: 72  AILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAA 131
             LK +LG  +  + ++  D   TLK           D VGG+ L + ++ +   G VA 
Sbjct: 62  DYLK-QLGASEVISREDVYD--GTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAV 118

Query: 132 CGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH 167
            G+              +   + + + + G  S   
Sbjct: 119 SGLT-----GGGEVPATVYPFILRGVSLLGIDSVYC 149

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 63.5 bits (153), Expect = 3e-13
 Identities = 28/175 (16%), Positives = 60/175 (34%), Gaps = 5/175 (2%)

Query: 20  GTSGFTAYVGFYEIS--QKGEKVFVSGAYG--HLVGQYAKLGGCYVVGSAGTNEKVAILK 75
           G +  TA+    E+     GE+V +  A G   +            + +   ++    + 
Sbjct: 7   GVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML 66

Query: 76  EKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVI 135
            +LG +   + +        L+     G+DV  +++ GE ++  V  +   GR    G  
Sbjct: 67  SRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKK 126

Query: 136 SECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPL 190
              ADAS           +  + +           ++  +      +  GK++ L
Sbjct: 127 DVYADASLGLAALAKSASFSVVDL-DLNLKLQPARYRQLLQHILQHVADGKLEVL 180

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 177

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 59.9 bits (144), Expect = 5e-12
 Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 18/156 (11%)

Query: 20  GTSGFTAYVGFYEI-----SQKGEKVFVSGAYGHLVGQYAKLG---GCYVVGSAGTNEKV 71
           GT+GFTA +    +       +  ++ V+GA G +      L    G  VV  +G     
Sbjct: 10  GTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTH 69

Query: 72  AILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAA 131
             LK  LG        E  + +   K+          D VG ++L   +A MN  G VAA
Sbjct: 70  EYLKS-LGASRVLPRDEFAESRPLEKQ----VWAGAIDTVGDKVLAKVLAQMNYGGCVAA 124

Query: 132 CGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH 167
           CG               ++  + + +++QG  S   
Sbjct: 125 CG-----LAGGFTLPTTVMPFILRNVRLQGVDSVMT 155

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 16/154 (10%)

Query: 20  GTSGFTAYVGFYEI-----SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKV 71
           GT+GFTA +  + +     + +   V V+   G  G L        G  V  S G   + 
Sbjct: 10  GTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH 69

Query: 72  AILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAA 131
             L+             E  +   ++           D VGG  L   ++ M   G VA 
Sbjct: 70  DYLRV---LGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAV 126

Query: 132 CGVISECADASKRAVPNMIDIVYKRIKIQGFLST 165
            G+              +   + + + + G  S 
Sbjct: 127 SGLTGGAEVP-----TTVHPFILRGVSLLGIDSV 155

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 4e-10
 Identities = 26/173 (15%), Positives = 50/173 (28%), Gaps = 12/173 (6%)

Query: 20  GTSGFTAYVGFYEIS--QKGEKVFVSGAY---GHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G    T Y      +  + G    V G       ++      G   ++G     +K A  
Sbjct: 10  GCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARA 69

Query: 75  KEKLGFDDAFNYKEET-DLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACG 133
           KE  G  +  N ++ +  ++  L      G+D  F+ +G   +  A       G   +  
Sbjct: 70  KE-FGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVV 128

Query: 134 VISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGK 186
           V      AS   +      +      +G           + +        + K
Sbjct: 129 VGVA---ASGEEIATRPFQLVTGRTWKGTAFGGW--KSVESVPKLVSEYMSKK 176

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 53.8 bits (128), Expect = 1e-09
 Identities = 37/168 (22%), Positives = 52/168 (30%), Gaps = 13/168 (7%)

Query: 19  AGTSGFTAYVGFYEIS--QKGEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
           A  SG TAY  F E      G+ V + GA   G      A+  G   V     +     L
Sbjct: 9   AMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKL 68

Query: 75  KEKLGFDDAFNYKE---ETDLKATLKRYFPDGIDVYFDNVGGEM-LEAAVANMNLFGRVA 130
            E++G D   N +E   E   KA +      G D   +  G    L      +   G  +
Sbjct: 69  AEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYS 128

Query: 131 ACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQ--DFIS 176
             GV                 +V K    +G   +D     +     S
Sbjct: 129 VAGVAVPQDPVP---FKVYEWLVLKNATFKGIWVSDTSHFVKTVSITS 173

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 51.5 bits (122), Expect = 6e-09
 Identities = 22/172 (12%), Positives = 48/172 (27%), Gaps = 10/172 (5%)

Query: 20  GTSGFTAYVGFYEIS--QKGEKVFVSGAYGH---LVGQYAKLGGCYVVGSAGTNEKVAIL 74
           G    T Y    +++   +G    V G  G    ++      G   ++G     +K A  
Sbjct: 10  GCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA 69

Query: 75  KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           KE    +       +  ++  L      G+D  F+ +G         +        +   
Sbjct: 70  KEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVI- 128

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGK 186
                    + +     ++      +G +        +D +        A K
Sbjct: 129 --VGVPPDSQNLSMNPMLLLSGRTWKGAIFGGF--KSKDSVPKLVADFMAKK 176

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 33/171 (19%), Positives = 62/171 (36%), Gaps = 11/171 (6%)

Query: 19  AGTSGFTAYVGFYEISQKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE 76
              +G  A +   ++            GA G      AK+ G  ++ +    E    L +
Sbjct: 12  GIQTGAGACINALKV-TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK 70

Query: 77  KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVI 135
           +LG     N K + D  A +K     G++   ++ G  E+L+  V  + + G++A  G  
Sbjct: 71  QLGATHVINSKTQ-DPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAP 129

Query: 136 SECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGK 186
                    A  ++ D++     I G +        + FI       + GK
Sbjct: 130 QL----GTTAQFDVNDLLLGGKTILGVVEGSG--SPKKFIPELVRLYQQGK 174

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-07
 Identities = 40/177 (22%), Positives = 64/177 (36%), Gaps = 16/177 (9%)

Query: 15  FANGA--GTSGFTAYVGFYEIS--QKGEKVFVSGAYGHLVGQYAKLGGCY--VVGSAGTN 68
           F  GA  G   FTAY      +  + GE V V GA G +     ++   Y   +      
Sbjct: 3   FKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGT 62

Query: 69  EKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGR 128
           E+   +  + G  + FN++E   +    K     GID+  + +    L   ++ ++  GR
Sbjct: 63  EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGR 122

Query: 129 VAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAG 185
           V   G              N  D + K   I G      F   ++       AL+AG
Sbjct: 123 VIVVGSRGT-------IEINPRDTMAKESSIIGV---TLFSSTKEEFQQYAAALQAG 169

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 46.6 bits (109), Expect = 4e-07
 Identities = 23/172 (13%), Positives = 42/172 (24%), Gaps = 11/172 (6%)

Query: 20  GTSGFTAYVGFYEIS--QKGEKVFVSGAYGH--LVGQYAKLGGCYVVGSAGTNEKVAILK 75
           G    T +      +  + G    V G               G   + +   N       
Sbjct: 10  GCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA 69

Query: 76  EKLGFDDAFNYKEETDL-KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
           +  G  D  N  + ++     L +    G+D   + VG   +        L G   +  V
Sbjct: 70  KVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLV 129

Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGK 186
                      V      +      +G +        +D +     A    K
Sbjct: 130 GWT----DLHDVATRPIQLIAGRTWKGSMFGGF--KGKDGVPKMVKAYLDKK 175

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (89), Expect = 5e-05
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 9/68 (13%)

Query: 20 GTSGFTAYVGFYEISQKGEK--------VFVSGAYGHLVGQYAKLGGCYVVGSAGTNEKV 71
          GT+GFTA +    +   G +           SG  G          G  VV  +G     
Sbjct: 10 GTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTH 69

Query: 72 AILKEKLG 79
            LK  LG
Sbjct: 70 EYLKS-LG 76

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 29/155 (18%), Positives = 43/155 (27%), Gaps = 9/155 (5%)

Query: 35  QKGEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL 92
           + G  V V G    G +    AKL G   +   G+        +  G  D  NYK     
Sbjct: 26  EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIE 85

Query: 93  KATLKRYFPDGIDVYFDNVGGEM-LEAAVANMNLFGRVAACGVISECADASKRAVPNMID 151
              +K     G+D      GG   L  AV  +   G ++               V     
Sbjct: 86  DQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVE--WG 143

Query: 152 IVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGK 186
                  I+G L        +       D +   +
Sbjct: 144 CGMAHKTIKGGL----CPGGRLRAERLRDMVVYNR 174

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 29/151 (19%), Positives = 50/151 (33%), Gaps = 10/151 (6%)

Query: 20  GTSGFTAYVGFYEIS-QKGEKVFVSGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL 78
             S  TAY+       + GEKV V  A G L     ++     +       +     EKL
Sbjct: 10  PVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR----PEKL 65

Query: 79  GFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISEC 138
               A   +E        +R    G       V G+ +E ++  +   GR+   G     
Sbjct: 66  ALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGKEVEESLGLLAHGGRLVYIGAAE-- 123

Query: 139 ADASKRAVPNMIDIVYKRIKIQGFLSTDHFD 169
               + A    + ++ + + + GF  T    
Sbjct: 124 ---GEVAPIPPLRLMRRNLAVLGFWLTPLLR 151

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 11/148 (7%)

Query: 19  AGTSGFTAYVGFYEISQKGEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILKE 76
              +G+ A V   ++   G    V G    G       K  G   +   GT++       
Sbjct: 11  GFATGYGAAVNTAKV-TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 69

Query: 77  KLGFDDAFNYKEETDLKATLKRYFPDG--IDVYFDNVGGEMLEAAVANM-NLFGRVAACG 133
           +LG  +  N K+       +     +G            E +  A+ +     G     G
Sbjct: 70  ELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLG 129

Query: 134 VISECADASKRAVPNMIDIVYKRIKIQG 161
           + S         +P    ++     ++G
Sbjct: 130 LASPNER-----LPLDPLLLLTGRSLKG 152

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 27/144 (18%), Positives = 43/144 (29%), Gaps = 19/144 (13%)

Query: 25  TAYVGFYEIS-QKGEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD 81
           T Y G        G  V+V+GA   G      A+L G  VV     N       +  GF+
Sbjct: 13  TGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE 72

Query: 82  DAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEM----------------LEAAVANMNL 125
            A    +    +          +D   D VG E                 L + +    +
Sbjct: 73  IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRV 132

Query: 126 FGRVAACGVISECADASKRAVPNM 149
            G++   G+       +  A   +
Sbjct: 133 AGKIGIPGLYVTEDPGAVDAAAKI 156

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 30/171 (17%), Positives = 45/171 (26%), Gaps = 14/171 (8%)

Query: 20  GTSGFTAYVGFYEIS-QKGEKVFVSGAYG---HLVGQYAKLGGCYVVGSAGTNEKVAILK 75
             SG T Y    + S    + + V GA G    +  Q AK      +      E+     
Sbjct: 10  TCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA 69

Query: 76  EKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVI 135
           ++ G D   N   +  L    +     G+D   D    E   +              G  
Sbjct: 70  KRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-----GKY 124

Query: 136 SECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGK 186
                       +   I    I+  G L  +  D              AGK
Sbjct: 125 VMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLG-----IMRLAEAGK 170

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 35  QKGEKVFV--SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL 92
           Q G  V V  +G  G +    AK  G +VV +A +  ++ + K   G D         + 
Sbjct: 25  QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NCGADVTLVVDPAKEE 83

Query: 93  KATLKRYFPD----GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPN 148
           ++++            +V  D  G E       N+         G +      S+     
Sbjct: 84  ESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINI-----TRTGGTLMLVGMGSQMVTVP 138

Query: 149 MIDIVYKRIKIQG-FLSTDHFDLHQDFISMTCDALRAGK 186
           +++   + I I+  F   + +        +  + + +G+
Sbjct: 139 LVNACAREIDIKSVFRYCNDYP-------IALEMVASGR 170

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	223
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.98
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.97
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.97
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.97
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.97
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.96
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.96
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.96
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.96
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.96
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.96
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.96
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.95
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.95
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.95
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.95
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.95
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.94
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.94
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.94
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.94
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.94
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.94
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.93
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.93
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.93
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.93
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.64
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.29
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.9
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.77
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.7
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.7
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.67
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.66
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.65
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.61
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.6
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.6
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.59
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.58
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.56
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.53
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.5
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.49
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.48
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.47
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.47
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.45
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.41
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.41
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.4
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.4
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.39
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.39
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.35
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.35
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.34
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.32
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.31
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.29
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.29
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.29
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.29
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.28
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.28
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.24
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.22
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.22
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.21
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.2
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.19
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.18
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.14
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.14
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.13
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.07
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.05
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.03
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.01
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.01
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	96.98
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.96
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	96.94
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.87
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.86
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.82
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.8
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.79
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.77
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.75
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.74
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	96.73
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.7
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.69
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.69
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.68
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	96.67
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.66
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.57
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	96.56
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.55
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.49
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.49
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.49
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.47
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.45
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.45
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.42
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.27
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	96.23
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.22
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.19
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.18
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	96.17
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.16
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.12
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.11
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.1
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.07
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.04
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.03
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.02
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.01
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.01
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	95.89
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.89
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.88
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	95.81
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	95.81
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.8
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	95.68
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	95.65
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.64
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.64
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	95.58
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.56
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	95.53
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	95.5
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.4
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.39
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	95.31
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	95.3
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	95.29
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	95.07
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.04
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.01
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.98
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	94.89
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	94.88
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	94.87
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	94.71
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	94.67
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	94.62
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	94.59
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	94.47
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	94.45
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.41
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	94.39
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	94.38
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.37
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.36
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	94.29
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	94.05
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	93.98
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	93.97
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	93.94
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.89
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	93.74
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	93.67
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	93.66
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	93.66
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	93.62
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	93.53
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	93.47
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	93.44
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	93.37
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	93.37
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	93.35
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	93.3
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.2
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	93.15
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	93.06
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	92.97
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	92.9
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	92.87
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	92.77
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	92.64
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.63
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	92.62
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.53
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	92.21
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	91.96
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	91.75
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.74
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	91.58
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.58
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	91.47
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	91.47
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	91.23
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	91.23
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.14
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	91.04
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	91.01
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	90.97
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	90.94
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	90.93
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	90.86
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	90.85
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	90.8
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	90.78
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	90.76
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.44
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	90.35
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	90.32
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.03
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	89.97
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	89.88
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	89.81
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	89.8
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	89.27
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	89.24
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	89.23
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	89.21
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	89.19
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	88.82
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.7
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	88.61
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	88.45
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	88.29
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	88.22
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	88.2
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	88.17
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	87.95
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	87.89
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	87.89
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.88
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	87.73
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	87.66
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	87.63
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	87.57
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	87.12
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	86.7
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	86.49
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	86.46
d1zn7a1	178	Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]	86.32
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	86.24
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	86.13
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	86.11
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	85.99
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	85.9
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	85.87
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	85.73
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	85.62
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	85.32
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	85.25
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	85.19
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	85.1
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	85.06
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	84.92
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	84.55
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.42
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	84.36
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	84.0
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.99
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	83.97
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	83.84
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	83.51
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	83.51
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	83.47
d1g2qa_	178	Adenine PRTase {Baker's yeast (Saccharomyces cerev	83.22
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	83.04
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	82.99
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	82.8
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	82.75
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	82.64
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	82.63
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	82.47
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	82.03
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	81.48
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	81.42
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	81.36
d1qb7a_	236	Adenine PRTase {Leishmania donovani [TaxId: 5661]}	81.24
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	81.0
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	81.0
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	80.93
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	80.85
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	80.85
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	80.75
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	80.67
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	80.28
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	80.03

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.98  E-value=2.2e-32  Score=196.25  Aligned_cols=171  Identities=20%  Similarity=0.259  Sum_probs=149.1

Q ss_pred             hhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           14 VFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ++||+++++++|||+++.+..  ++|++|||+   |++|++++|+|+..|++|+++++++++.+.++ ++|+++++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~-~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS-RLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-TTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccc-cccccccccCCc
Confidence            489999999999999998887  999999999   99999999999999999999999999999999 999999999998


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      . ++.+.+++.+++ |+|++|||+|++.++.++.+|+++|+++.+|..+...    . ......++.++.++.++.....
T Consensus        80 ~-~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~  153 (183)
T d1pqwa_          80 V-DFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYA----D-ASLGLAALAKSASFSVVDLDLN  153 (183)
T ss_dssp             S-THHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTT----T-CEEEGGGGTTTCEEEECCHHHH
T ss_pred             c-CHHHHHHHHhCCCCEEEEEecccchHHHHHHHHhcCCCEEEEEccCCCCC----C-cccchHHHhCCcEEEEEEccce
Confidence            8 999999999988 9999999999999999999999999999998765432    1 2223344578888888775543


Q ss_pred             ----cchHHHHHHHHHHHHHcCCCCccc
Q 043295          168 ----FDLHQDFISMTCDALRAGKIQPLE  191 (223)
Q Consensus       168 ----~~~~~~~~~~~~~~~~~g~i~~~~  191 (223)
                          +...++.++++.+++++|+++|.+
T Consensus       154 ~~~~~~~~~~~~~~v~~~i~~G~i~p~P  181 (183)
T d1pqwa_         154 LKLQPARYRQLLQHILQHVADGKLEVLP  181 (183)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             eccCHHHHHHHHHHHHHHHHCCCCceeC
Confidence                455567899999999999999853

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.97  E-value=4.8e-31  Score=188.82  Aligned_cols=169  Identities=41%  Similarity=0.684  Sum_probs=146.5

Q ss_pred             hhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           15 FANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        15 ~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      -.++++++++|||++|.+..  ++|++|||+   |++|++++|+|+..|++|+++++++++.+.++ ++|+++++++.++
T Consensus         6 ~l~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~-~~Ga~~vi~~~~~   84 (182)
T d1v3va2           6 ALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTV   84 (182)
T ss_dssp             GGTTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETTSC
T ss_pred             HHHHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHH-hhhhhhhcccccc
Confidence            34788999999999999887  999999999   78999999999999999999999999999999 9999999999987


Q ss_pred             ccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEccccccccc-ccCCCCchHHHHhhcceEEeeeccCc
Q 043295           90 TDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADA-SKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        90 ~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                       ++.+.+.+.+.+ |+|+||||+|++.++.++++++++|+++.+|..+..... ..+..+++..++.+++++.|+...++
T Consensus        85 -~~~~~~~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~~  163 (182)
T d1v3va2          85 -NSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRW  163 (182)
T ss_dssp             -SCHHHHHHHHCTTCEEEEEESSCHHHHHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGGC
T ss_pred             -cHHHHHHHHhhcCCCceeEEecCchhhhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEecc
Confidence             777777777666 999999999999999999999999999999976554321 12334567788999999999988776


Q ss_pred             -cchHHHHHHHHHHHHHcC
Q 043295          168 -FDLHQDFISMTCDALRAG  185 (223)
Q Consensus       168 -~~~~~~~~~~~~~~~~~g  185 (223)
                       .+...+.++++.+++++|
T Consensus       164 ~~~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         164 QGDVREKALRDLMKWVLEG  182 (182)
T ss_dssp             CHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHhCc
Confidence             455667889999999886

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-31  Score=187.98  Aligned_cols=145  Identities=27%  Similarity=0.367  Sum_probs=132.3

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +++||+++++++|||++|.+..  ++|++|||+   |++|++++|+|+..|++|+++++++++.+.++ ++|+++++|++
T Consensus         3 ~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~-~~Ga~~vi~~~   81 (174)
T d1yb5a2           3 FKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QNGAHEVFNHR   81 (174)
T ss_dssp             HHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEEEETT
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccc-ccCcccccccc
Confidence            6799999999999999998776  899999999   89999999999999999999999999999999 99999999999


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      +. ++.+.+++.+++ ++|++|||+|++.++.++++++++|+++.+|..+.       .++++..++.+++++.|+....
T Consensus        82 ~~-~~~~~i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~-------~~~~~~~~~~k~~~i~g~~~~~  153 (174)
T d1yb5a2          82 EV-NYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRGT-------IEINPRDTMAKESSIIGVTLFS  153 (174)
T ss_dssp             ST-THHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCCSC-------EEECTHHHHTTTCEEEECCGGG
T ss_pred             cc-cHHHHhhhhhccCCceEEeecccHHHHHHHHhccCCCCEEEEEecCCC-------CCCCHHHHHHCCCEEEEEEecC
Confidence            88 999999999988 99999999999999999999999999999986542       2456678889999999987654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=3.2e-31  Score=187.23  Aligned_cols=166  Identities=22%  Similarity=0.295  Sum_probs=132.5

Q ss_pred             hhhhhccccchhhHHHHHHHH---h--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEI---S--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF   84 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~---~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~   84 (223)
                      +++||+++++++|||++++.+   +  ++|++|||+   |+||.+++|+|+..|++|++++++++|.+.++ ++|+++++
T Consensus         3 ~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~-~lGa~~vi   81 (176)
T d1xa0a2           3 LKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VLGAKEVL   81 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HTTCSEEE
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH-hcccceee
Confidence            679999999999999887654   3  789999999   99999999999999999999999999999999 99999999


Q ss_pred             ecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           85 NYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        85 ~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      |+++  .+.+.++...++++|+|||++|++++..++++|+++|+++.+|...+.     ..+++...++.|++++.|+..
T Consensus        82 ~~~~--~~~~~~~~~~~~gvD~vid~vgg~~~~~~l~~l~~~Griv~~G~~~g~-----~~~~~~~~~~~k~~~i~Gv~~  154 (176)
T d1xa0a2          82 ARED--VMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGA-----EVPTTVHPFILRGVSLLGIDS  154 (176)
T ss_dssp             ECC-----------CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSSS-----CCCCCSHHHHHTTCEEEECCS
T ss_pred             ecch--hHHHHHHHhhccCcCEEEEcCCchhHHHHHHHhCCCceEEEeecccCc-----ccCCCHHHHHHCCcEEEEEeC
Confidence            9875  355555444444999999999999999999999999999999987653     446788899999999999754


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCCcc
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQPL  190 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~~~  190 (223)
                      ...+   .+....+.+.+ .|.++|.
T Consensus       155 ~~~~---~~~~~~~~~~l-ag~lkP~  176 (176)
T d1xa0a2         155 VYCP---MDLRLRIWERL-AGDLKPD  176 (176)
T ss_dssp             SSCC---HHHHHHHHHHH-HTTTCCC
T ss_pred             CcCC---HHHHHHHHHHH-hcccCCC
Confidence            4321   23334444444 4777763

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6.1e-30  Score=182.71  Aligned_cols=167  Identities=22%  Similarity=0.240  Sum_probs=138.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      |++||+++++++|||++|.+..  ++|++|+|+   |++|++++|+|+..|++|+++++++++++.++ ++|+++++|++
T Consensus         3 fe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~-~lGa~~vi~~~   81 (179)
T d1qora2           3 FEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KAGAWQVINYR   81 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH-hcCCeEEEECC
Confidence            7899999999999999998876  999999999   67999999999999999999999999999999 99999999999


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhc-ceEEeeecc
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKR-IKIQGFLST  165 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~  165 (223)
                      ++ ++.+++++.+++ ++|+++|++|++.+..++.+++++|+++.++.....     ....+...+..+. ..+.+....
T Consensus        82 ~~-d~~~~v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~  155 (179)
T d1qora2          82 EE-DLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGA-----VTGVNLGILNQKGSLYVTRPSLQ  155 (179)
T ss_dssp             TS-CHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCC-----CCCBCTHHHHHTTSCEEECCCHH
T ss_pred             CC-CHHHHHHHHhCCCCeEEEEeCccHHHHHHHHHHHhcCCeeeecccccCC-----ccccchhhhhccceEEEEeeEEe
Confidence            98 999999999988 999999999999999999999999999999876653     2234444444432 333333322


Q ss_pred             Cc---cchHHHHHHHHHHHHHcCC
Q 043295          166 DH---FDLHQDFISMTCDALRAGK  186 (223)
Q Consensus       166 ~~---~~~~~~~~~~~~~~~~~g~  186 (223)
                      .+   ++...+.+.++.+++++|.
T Consensus       156 ~~~~~~~~~~~~~~~l~~lv~~Gv  179 (179)
T d1qora2         156 GYITTREELTEASNELFSLIASGV  179 (179)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHTTS
T ss_pred             eecCCHHHHHHHHHHHHHHHHCcC
Confidence            22   3444566778888888873

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.97  E-value=4.4e-29  Score=177.11  Aligned_cols=166  Identities=19%  Similarity=0.253  Sum_probs=145.2

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++.+++++|++.|||+++.+..  ++|++|+|+  |++|++++|+|+..|+ +|++++.+++|++.++ ++|+++++|++
T Consensus         3 ~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~-~~Ga~~~i~~~   81 (174)
T d1f8fa2           3 IELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QLGATHVINSK   81 (174)
T ss_dssp             GGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HHTCSEEEETT
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH-HcCCeEEEeCC
Confidence            4579999999999999988776  999999999  9999999999999999 5667788999999999 99999999999


Q ss_pred             CcccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           88 EETDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      ++ ++.+++++.+++++|+||||+|+ +.++.++++++++|+++.+|.+...    ....+++..++.+++++.|+...+
T Consensus        82 ~~-~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~----~~~~~~~~~~~~k~~~i~Gs~~g~  156 (174)
T d1f8fa2          82 TQ-DPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLG----TTAQFDVNDLLLGGKTILGVVEGS  156 (174)
T ss_dssp             TS-CHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTT----CCCCCCHHHHHHTTCEEEECSGGG
T ss_pred             Cc-CHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCC----cccccCHHHHHHCCCEEEEEEecC
Confidence            87 89999999999899999999997 5789999999999999999975432    334678889999999999987654


Q ss_pred             ccchHHHHHHHHHHHHHcCC
Q 043295          167 HFDLHQDFISMTCDALRAGK  186 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~  186 (223)
                      +  ..++.++++++++++|+
T Consensus       157 ~--~~~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         157 G--SPKKFIPELVRLYQQGK  174 (174)
T ss_dssp             S--CHHHHHHHHHHHHHTTS
T ss_pred             C--ChHHHHHHHHHHHHcCC
Confidence            3  12567899999999985

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=1.2e-28  Score=173.81  Aligned_cols=161  Identities=22%  Similarity=0.291  Sum_probs=141.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++++|+++++++|||+++++.. ++|++|+|+  |++|++++|+||..|++|+++++++++++.++ ++|+++++|+.+.
T Consensus         3 f~~aA~l~ca~~Ta~~al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~-~~Ga~~~i~~~~~   81 (166)
T d1llua2           3 FAEIAPILCAGVTVYKGLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR-KLGASLTVNARQE   81 (166)
T ss_dssp             HHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEEETTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh-ccCccccccccch
Confidence            6799999999999999998877 999999999  99999999999999999999999999999999 9999999999987


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccc
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFD  169 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  169 (223)
                       ++.+.+++.+.++.++++++.+++.+..++++++++|+++.+|.+.+      ..+++...++.+++++.|+....   
T Consensus        82 -~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~k~~~i~Gs~~~~---  151 (166)
T d1llua2          82 -DPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPG------DFPTPIFDVVLKGLHIAGSIVGT---  151 (166)
T ss_dssp             -CHHHHHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSS------EEEEEHHHHHHTTCEEEECCSCC---
T ss_pred             -hHHHHHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEEEEecCC------CccCCHHHHHhCCcEEEEEeecC---
Confidence             88888888776555555555566889999999999999999997653      23567888999999999988776   


Q ss_pred             hHHHHHHHHHHHHHcCC
Q 043295          170 LHQDFISMTCDALRAGK  186 (223)
Q Consensus       170 ~~~~~~~~~~~~~~~g~  186 (223)
                        ++.++++++++.+|.
T Consensus       152 --~~d~~e~l~l~~~Gl  166 (166)
T d1llua2         152 --RADLQEALDFAGEGL  166 (166)
T ss_dssp             --HHHHHHHHHHHHTTS
T ss_pred             --HHHHHHHHHHHHCcC
Confidence              567889999999873

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2e-28  Score=175.59  Aligned_cols=170  Identities=34%  Similarity=0.522  Sum_probs=135.2

Q ss_pred             hhccccchhhHHHHHHHHh--hCC--CEEEEE---CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           16 ANGAGTSGFTAYVGFYEIS--QKG--EKVFVS---GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        16 aa~l~~~~~ta~~~l~~~~--~~g--~~vlI~---g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ..+++++++|||++|.+..  ++|  ++|||+   |+||++++|+||..|+ .|++++.++++...+.+++|++.++|+.
T Consensus         6 ~galg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~   85 (187)
T d1vj1a2           6 LGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYK   85 (187)
T ss_dssp             GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETT
T ss_pred             HHHhhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeecc
Confidence            3458889999999999987  666  899999   9999999999999999 5666777777666555489999999999


Q ss_pred             CcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCC-C---CchHHHHhhcceEEeee
Q 043295           88 EETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRA-V---PNMIDIVYKRIKIQGFL  163 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~---~~~~~~~~~~~~~~g~~  163 (223)
                      ++ ++.+.+++.+++|+|+|||++|++.+..++++++++|+++.+|..++.....+.. .   .....+..+++++.|+.
T Consensus        86 ~~-~~~~~~~~~~~~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~~~g~~  164 (187)
T d1vj1a2          86 TG-NVAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFT  164 (187)
T ss_dssp             SS-CHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCEEEECC
T ss_pred             ch-hHHHHHHHHhccCceEEEecCCchhHHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceEEEEeE
Confidence            98 9999999999779999999999999999999999999999999765533211111 1   11234567889999988


Q ss_pred             ccCccchHHHHHHHHHHHHHcCC
Q 043295          164 STDHFDLHQDFISMTCDALRAGK  186 (223)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~  186 (223)
                      ..++.+.+.+.++++.+++++|+
T Consensus       165 ~~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         165 VLNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             GGGCGGGHHHHHHHHHHHHHHTS
T ss_pred             ecchHHHHHHHHHHHHHHHHCcC
Confidence            87777777889999999999885

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=2.3e-28  Score=172.75  Aligned_cols=163  Identities=25%  Similarity=0.256  Sum_probs=147.1

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      +++||++++++.|||+++++.. ++|++|+|+  |++|++++|+++..|++|++++.+++|+++++ ++|++.++++.+.
T Consensus         3 ~eeAA~l~~~~~Ta~~al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k-~~Ga~~~~~~~~~   81 (168)
T d1rjwa2           3 FEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-ELGADLVVNPLKE   81 (168)
T ss_dssp             HHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCSEEECTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhh-hcCcceecccccc
Confidence            6799999999999999999888 999999999  99999999999999999999999999999999 9999999999987


Q ss_pred             ccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccc
Q 043295           90 TDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFD  169 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  169 (223)
                       ++.+.++..+++..|+++|+.+...+..++++++++|+++.+|.+.+      ...++...++.+++++.|+....   
T Consensus        82 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~------~~~~~~~~~~~~~~~i~gs~~~~---  151 (168)
T d1rjwa2          82 -DAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPE------EMPIPIFDTVLNGIKIIGSIVGT---  151 (168)
T ss_dssp             -CHHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSS------EEEEEHHHHHHTTCEEEECCSCC---
T ss_pred             -hhhhhcccccCCCceEEeecCCHHHHHHHHHHhccCCceEecccccC------CCCCCHHHHHHCCcEEEEEeeCC---
Confidence             89999999988767777777667889999999999999999997654      23567888999999999988766   


Q ss_pred             hHHHHHHHHHHHHHcCCCC
Q 043295          170 LHQDFISMTCDALRAGKIQ  188 (223)
Q Consensus       170 ~~~~~~~~~~~~~~~g~i~  188 (223)
                        ++.++++++++++|+++
T Consensus       152 --~~~~~~~l~l~~~Gkik  168 (168)
T d1rjwa2         152 --RKDLQEALQFAAEGKVK  168 (168)
T ss_dssp             --HHHHHHHHHHHHTTSCC
T ss_pred             --HHHHHHHHHHHHhCCCC
Confidence              67799999999999985

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.96  E-value=2.9e-28  Score=172.65  Aligned_cols=159  Identities=20%  Similarity=0.244  Sum_probs=140.3

Q ss_pred             hhhhhccccchhhHHHHHHHHh---hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeec
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS---QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNY   86 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~---~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~   86 (223)
                      +.++|++++++.|||+++.+..   ++|++|+|+  |++|++++|+++..|+ +|++++.+++|++.++ ++|+++++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~-~~ga~~~i~~   84 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RLGADHVVDA   84 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HTTCSEEEET
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh-hcccceeecC
Confidence            4589999999999999999875   899999999  9999999999999997 7888899999999999 9999999998


Q ss_pred             CCcccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           87 KEETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        87 ~~~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      .+  +..+.+.+.+++ ++|++|||+|+ ..++.++++++++|+++.+|...       ..++++..++.+++++.|+..
T Consensus        85 ~~--~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~-------~~~~~~~~l~~k~~~i~Gs~~  155 (172)
T d1h2ba2          85 RR--DPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGG-------ELRFPTIRVISSEVSFEGSLV  155 (172)
T ss_dssp             TS--CHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSS-------CCCCCHHHHHHTTCEEEECCS
T ss_pred             cc--cHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcc-------cccCCHHHHHhCCcEEEEEEe
Confidence            86  456666777777 99999999997 47899999999999999999643       235778889999999999988


Q ss_pred             cCccchHHHHHHHHHHHHHcCC
Q 043295          165 TDHFDLHQDFISMTCDALRAGK  186 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~  186 (223)
                      ..     .+.++++++++++|+
T Consensus       156 ~~-----~~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         156 GN-----YVELHELVTLALQGK  172 (172)
T ss_dssp             CC-----HHHHHHHHHHHHTTS
T ss_pred             cC-----HHHHHHHHHHHHcCC
Confidence            77     667889999999885

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.96  E-value=2.2e-28  Score=173.06  Aligned_cols=161  Identities=23%  Similarity=0.226  Sum_probs=145.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      +.+||++++++.|||+++++.. +++++|+|+   |++|++++|+++..|+ +|++++.+++++++++ ++|++++++++
T Consensus         3 ~~eAA~l~c~~~Ta~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~-~~Ga~~~i~~~   81 (170)
T d1jvba2           3 AVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAGADYVINAS   81 (170)
T ss_dssp             HHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HHTCSEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH-HcCCceeeccC
Confidence            4689999999999999998877 999999999   7899999999999996 9999999999999999 99999999998


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeecc
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  165 (223)
                      +. ++.+.+++.+.+ ++|++|||+|+ ..++.++++++++|+++.+|....      ...++...++.+++++.|+...
T Consensus        82 ~~-~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~k~i~i~Gs~~~  154 (170)
T d1jvba2          82 MQ-DPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGA------DLHYHAPLITLSEIQFVGSLVG  154 (170)
T ss_dssp             TS-CHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCC------CCCCCHHHHHHHTCEEEECCSC
T ss_pred             Cc-CHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccC------ccccCHHHHHhCCcEEEEEecC
Confidence            87 899999998887 89999999997 578899999999999999997653      3467788899999999999887


Q ss_pred             CccchHHHHHHHHHHHHHcCC
Q 043295          166 DHFDLHQDFISMTCDALRAGK  186 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~  186 (223)
                      .     ++.++++++++++|+
T Consensus       155 ~-----~~d~~~~l~lv~~GK  170 (170)
T d1jvba2         155 N-----QSDFLGIMRLAEAGK  170 (170)
T ss_dssp             C-----HHHHHHHHHHHHTTS
T ss_pred             C-----HHHHHHHHHHHHcCC
Confidence            6     677999999999985

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=2.7e-29  Score=177.59  Aligned_cols=142  Identities=26%  Similarity=0.299  Sum_probs=118.9

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++||+++++++|||+++.+.. ++|++|||+   |++|++++|+|+..|++|+++++++++.+.++ ++|+++++|+.+
T Consensus         3 ~eeAA~l~~~~~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~-~lGa~~~i~~~~   81 (171)
T d1iz0a2           3 PEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-ALGAEEAATYAE   81 (171)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HTTCSEEEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccc-ccccceeeehhh
Confidence            5799999999999999998866 999999999   89999999999999999999999999999999 999999998864


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      .   .+.   .+.+ |+|+||||+| +.+..++++++++|+++.+|...+     ...++++..++.+++++.|+...++
T Consensus        82 ~---~~~---~~~~~g~D~v~d~~G-~~~~~~~~~l~~~G~~v~~G~~~g-----~~~~~~~~~~~~k~~~i~g~~~~~~  149 (171)
T d1iz0a2          82 V---PER---AKAWGGLDLVLEVRG-KEVEESLGLLAHGGRLVYIGAAEG-----EVAPIPPLRLMRRNLAVLGFWLTPL  149 (171)
T ss_dssp             H---HHH---HHHTTSEEEEEECSC-TTHHHHHTTEEEEEEEEEC------------CCCCTTHHHHTTCEEEECCHHHH
T ss_pred             h---hhh---hhccccccccccccc-hhHHHHHHHHhcCCcEEEEeCCCC-----CCCCccHHHHHHCCcEEEEEeCcCh
Confidence            2   222   3334 8999999988 568899999999999999997654     2345677888999999999987664

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.96  E-value=1.4e-28  Score=176.81  Aligned_cols=168  Identities=19%  Similarity=0.233  Sum_probs=137.8

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE----CchHHHHHHHHHHcCCeEEEEecCHH----HHHHHHHhhCCCe
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS----GAYGHLVGQYAKLGGCYVVGSAGTNE----KVAILKEKLGFDD   82 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~----g~vG~~a~qla~~~g~~v~~~~~~~~----~~~~~~~~~g~~~   82 (223)
                      +++||+++++++|||++|.+..  ++|++++|+    |++|++++|+||.+|++|++++++.+    +.+.++ ++|+++
T Consensus         3 ~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~-~lGad~   81 (189)
T d1gu7a2           3 INQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLK-ELGATQ   81 (189)
T ss_dssp             HHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHH-HHTCSE
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhh-hccccE
Confidence            6799999999999999999876  899988886    78999999999999999999986644    455677 899999


Q ss_pred             eeecCCc--ccHHHHHHHhC---CCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcc
Q 043295           83 AFNYKEE--TDLKATLKRYF---PDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRI  157 (223)
Q Consensus        83 ~~~~~~~--~~~~~~i~~~~---~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  157 (223)
                      ++++++.  .++.+.+++.+   ++++|++|||+|++.+..++++|+++|+++.+|...+.     +..++...++.+++
T Consensus        82 vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~~~~-----~~~~~~~~l~~k~~  156 (189)
T d1gu7a2          82 VITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQ-----PVTIPTSLYIFKNF  156 (189)
T ss_dssp             EEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSSC-----CEEECHHHHHHSCC
T ss_pred             EEeccccchhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECCccCC-----CccCcHHHHHHCCc
Confidence            9988643  13445555543   44899999999999999999999999999999976542     33567788888999


Q ss_pred             eEEeeeccCc----cchHHHHHHHHHHHHHcCC
Q 043295          158 KIQGFLSTDH----FDLHQDFISMTCDALRAGK  186 (223)
Q Consensus       158 ~~~g~~~~~~----~~~~~~~~~~~~~~~~~g~  186 (223)
                      ++.|+....+    +...++.+.++.+++++|+
T Consensus       157 ~i~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         157 TSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             EEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            9999877654    3445678899999999885

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.95  E-value=5.1e-28  Score=171.24  Aligned_cols=166  Identities=20%  Similarity=0.128  Sum_probs=137.0

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++|+.+++++.|||+++.... ++|++|+|+  |++|++++|+||..|+ +|++++.+++|++.++ ++|+++++|+++
T Consensus         3 ~e~A~~l~~~~~ta~~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~-~lGa~~~i~~~~   81 (174)
T d1jqba2           3 LENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK-FYGATDILNYKN   81 (174)
T ss_dssp             HHHHHTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH-HHTCSEEECGGG
T ss_pred             HHHHHHhhhHHHHHHHHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH-hhCccccccccc
Confidence            5688889999999999998777 999999999  9999999999999998 7999999999999999 999999999988


Q ss_pred             cccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccC
Q 043295           89 ETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTD  166 (223)
Q Consensus        89 ~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  166 (223)
                      . ++.+.+++.+++ |+|++|||+|+ ..++.++++++++|+++.+|.++....  ...+........++.++.|.....
T Consensus        82 ~-~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~--~~~~~~~~~~~~~~~~i~g~~~~~  158 (174)
T d1jqba2          82 G-HIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDA--LLIPRVEWGCGMAHKTIKGGLCPG  158 (174)
T ss_dssp             S-CHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSE--EEEETTTTGGGTBCCEEEEBCCCC
T ss_pred             h-hHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCc--CcCcHhHHHHHhCccEEEEecCCC
Confidence            7 899999999998 99999999997 678999999999999999997654211  000011122344667887776544


Q ss_pred             ccchHHHHHHHHHHHHHcCC
Q 043295          167 HFDLHQDFISMTCDALRAGK  186 (223)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~g~  186 (223)
                          .+...+.+.+++..|+
T Consensus       159 ----~r~~~e~l~~li~~gk  174 (174)
T d1jqba2         159 ----GRLRAERLRDMVVYNR  174 (174)
T ss_dssp             ----HHHHHHHHHHHHHTTS
T ss_pred             ----CcccHHHHHHHHHcCC
Confidence                1455677888888875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=3.4e-27  Score=168.63  Aligned_cols=161  Identities=20%  Similarity=0.235  Sum_probs=135.3

Q ss_pred             hhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           14 VFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +.+|++.+++.|||+++.+..  ++|++|||+  |++|++++|+|+..|+ +|+++++++++++.++ ++|+++++|+.+
T Consensus         4 ~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi~~~~   82 (182)
T d1vj0a2           4 DVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EIGADLTLNRRE   82 (182)
T ss_dssp             HHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HTTCSEEEETTT
T ss_pred             HHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccc-cccceEEEeccc
Confidence            468899999999999998876  899999999  9999999999999999 8999999999999999 999999999987


Q ss_pred             cccH---HHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCch-HHHHhhcceEEee
Q 043295           89 ETDL---KATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNM-IDIVYKRIKIQGF  162 (223)
Q Consensus        89 ~~~~---~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~  162 (223)
                      . +.   .+.+.+.+++ |+|+||||+|+ ..++.++++++++|+++.+|.....    .+.+.+. ..++.+++++.|+
T Consensus        83 ~-~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~----~~~~~~~~~~l~~k~l~i~G~  157 (182)
T d1vj0a2          83 T-SVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQ----DPVPFKVYEWLVLKNATFKGI  157 (182)
T ss_dssp             S-CHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCC----CCEEECHHHHTTTTTCEEEEC
T ss_pred             c-chHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCC----CccccccHHHHHHCCcEEEEE
Confidence            6 54   4557778887 99999999997 5789999999999999999965432    1222333 3456799999999


Q ss_pred             eccCccchHHHHHHHHHHHHHcC
Q 043295          163 LSTDHFDLHQDFISMTCDALRAG  185 (223)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~g  185 (223)
                      ...+     .+.+++++++++++
T Consensus       158 ~~~~-----~~~~~~~~~~i~~~  175 (182)
T d1vj0a2         158 WVSD-----TSHFVKTVSITSRN  175 (182)
T ss_dssp             CCCC-----HHHHHHHHHHHHTC
T ss_pred             EeCC-----HHHHHHHHHHHHHC
Confidence            8876     56677777877764

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=4.7e-28  Score=171.28  Aligned_cols=162  Identities=22%  Similarity=0.244  Sum_probs=132.6

Q ss_pred             hhhhhccccchhhHHHHHHHHh-----hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-----QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF   84 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-----~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~   84 (223)
                      +.+||+++++++|||++++.+.     +++++|||+   |+||.+++|+||.+|++|+++++++++.+.++ ++|+++++
T Consensus         3 ~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~-~lGad~vi   81 (177)
T d1o89a2           3 ARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK-SLGASRVL   81 (177)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH-HHTEEEEE
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHH-hhcccccc
Confidence            3599999999999998876543     456699999   99999999999999999999999999999999 99999999


Q ss_pred             ecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           85 NYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        85 ~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      |+++. ++.+   ...+...|.++|++|++.+..++++++++|+++.+|..++.     ....+...++.+++++.|+..
T Consensus        82 ~~~~~-~~~~---~l~~~~~~~vvD~Vgg~~~~~~l~~l~~~Griv~~G~~~~~-----~~~~~~~~~~~k~~~i~G~~~  152 (177)
T d1o89a2          82 PRDEF-AESR---PLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGF-----TLPTTVMPFILRNVRLQGVDS  152 (177)
T ss_dssp             EGGGS-SSCC---SSCCCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTCS-----CCCCCSHHHHHHCCEEEECCS
T ss_pred             ccccH-HHHH---HHHhhcCCeeEEEcchHHHHHHHHHhccccceEeecccCCc-----cccccHHHHHHCCCeEEEEec
Confidence            99875 4432   22334689999999999999999999999999999987653     335677889999999999876


Q ss_pred             cCc-cchHHHHHHHHHHHHHc
Q 043295          165 TDH-FDLHQDFISMTCDALRA  184 (223)
Q Consensus       165 ~~~-~~~~~~~~~~~~~~~~~  184 (223)
                      ... ++.+.+.++++.+.+.+
T Consensus       153 ~~~~~~~~~~~~~~L~~~l~~  173 (177)
T d1o89a2         153 VMTPPERRAQAWQRLVADLPE  173 (177)
T ss_dssp             SSCCHHHHHHHHHHHHHHSCH
T ss_pred             ccCCHHHHHHHHHHHHHhccc
Confidence            543 45555566666665544

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=7.5e-28  Score=169.83  Aligned_cols=159  Identities=16%  Similarity=0.123  Sum_probs=135.8

Q ss_pred             hhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           14 VFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      +.||+++|++.|+|+++++.. ++|++|+|+  |++|++++|+||..|++|++++++++|++.++ ++|+++++++.+..
T Consensus         4 e~AApl~cag~Ta~~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~-~lGa~~~i~~~~~~   82 (168)
T d1piwa2           4 HLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM-KMGADHYIATLEEG   82 (168)
T ss_dssp             HHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HHTCSEEEEGGGTS
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh-ccCCcEEeeccchH
Confidence            468899999999999998877 999999999  99999999999999999999999999999999 99999999887642


Q ss_pred             cHHHHHHHhCCCCccEEEcCCChH---HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           91 DLKATLKRYFPDGIDVYFDNVGGE---MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        91 ~~~~~i~~~~~~~~d~vid~~g~~---~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      ++.+    ...+++|+++||+++.   .+..++++++++|+++.+|.+..      ...++...++.+++++.|+.... 
T Consensus        83 ~~~~----~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~------~~~~~~~~~~~k~~~i~Gs~~g~-  151 (168)
T d1piwa2          83 DWGE----KYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ------HEMLSLKPYGLKAVSISYSALGS-  151 (168)
T ss_dssp             CHHH----HSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS------SCCEEECGGGCBSCEEEECCCCC-
T ss_pred             HHHH----hhhcccceEEEEecCCccchHHHHHHHhhccceEEEeccccc------cccccHHHHHhCCcEEEEEeeCC-
Confidence            4433    2334799999998853   47788999999999999997653      23556677888999999988776 


Q ss_pred             cchHHHHHHHHHHHHHcCCCC
Q 043295          168 FDLHQDFISMTCDALRAGKIQ  188 (223)
Q Consensus       168 ~~~~~~~~~~~~~~~~~g~i~  188 (223)
                          ++.++++++++++|+|+
T Consensus       152 ----~~~~~e~l~li~~gkIk  168 (168)
T d1piwa2         152 ----IKELNQLLKLVSEKDIK  168 (168)
T ss_dssp             ----HHHHHHHHHHHHHTTCC
T ss_pred             ----HHHHHHHHHHHHhCCCC
Confidence                67789999999999885

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.9e-27  Score=164.88  Aligned_cols=158  Identities=22%  Similarity=0.231  Sum_probs=131.7

Q ss_pred             hhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcc
Q 043295           14 VFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEET   90 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   90 (223)
                      +.+|+++|++.|+|+++++.. ++|++|+|+  |++|++++|+||.+|+++++++.+++++++++ ++|++.++|+.+. 
T Consensus         7 a~~Apl~Cag~Tay~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~-~lGad~~i~~~~~-   84 (168)
T d1uufa2           7 AAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-ALGADEVVNSRNA-   84 (168)
T ss_dssp             HHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHTCSEEEETTCH-
T ss_pred             HHHHHHHhHHHHHHHHHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHh-ccCCcEEEECchh-
Confidence            478889999999999998766 999999999  99999999999999999999999999999999 9999999998875 


Q ss_pred             cHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCccc
Q 043295           91 DLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFD  169 (223)
Q Consensus        91 ~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  169 (223)
                      +...    ...+++|++|||+|+ ..+..++.+++++|+++.+|.+.+     ....++...++.+++++.|+....   
T Consensus        85 ~~~~----~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~-----~~~~~~~~~l~~k~~~i~Gs~~~~---  152 (168)
T d1uufa2          85 DEMA----AHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPAT-----PHKSPEVFNLIMKRRAIAGSMIGG---  152 (168)
T ss_dssp             HHHH----TTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC------------CHHHHHTTTCEEEECCSCC---
T ss_pred             hHHH----HhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCC-----CcccccHHHHHHCCcEEEEEeecC---
Confidence            3221    122389999999997 469999999999999999997654     233567788889999999998877   


Q ss_pred             hHHHHHHHHHHHHHcCCC
Q 043295          170 LHQDFISMTCDALRAGKI  187 (223)
Q Consensus       170 ~~~~~~~~~~~~~~~g~i  187 (223)
                        .+.++++++++.+++|
T Consensus       153 --~~d~~e~l~l~a~~~I  168 (168)
T d1uufa2         153 --IPETQEMLDFCAEHGI  168 (168)
T ss_dssp             --HHHHHHHHHHHHHHTC
T ss_pred             --HHHHHHHHHHHHHcCC
Confidence              6778888998887654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.94  E-value=1.7e-26  Score=164.24  Aligned_cols=168  Identities=15%  Similarity=0.117  Sum_probs=133.9

Q ss_pred             hhhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeec
Q 043295           12 CYVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNY   86 (223)
Q Consensus        12 ~~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~   86 (223)
                      ++++||.++|++.|||+++.+..  +||++|+|+  |++|.+++|+++.+|+ +|++++++++|++.++ ++|+++++|+
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak-~lGa~~~i~~   80 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EFGATECINP   80 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HHTCSEEECG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH-HhCCcEEEeC
Confidence            36789999999999999998765  999999999  9999999999999997 7888989999999999 9999999988


Q ss_pred             CCc-ccHHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           87 KEE-TDLKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        87 ~~~-~~~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      .+. +...+.++..+++|+|++||++|+ ..+..+..+++++|+++.++.....    ..........+.++.++.|+..
T Consensus        81 ~~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~----~~~~~~~~~~~~~~~~i~Gs~~  156 (176)
T d2fzwa2          81 QDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAAS----GEEIATRPFQLVTGRTWKGTAF  156 (176)
T ss_dssp             GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCT----TCCEEECTHHHHTTCEEEECSG
T ss_pred             CchhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccc----cccccccHHHHHCCCEEEEEee
Confidence            653 245566666666699999999997 4677888888999888877654332    1112233444567889999887


Q ss_pred             cCccchHHHHHHHHHHHHHcCC
Q 043295          165 TDHFDLHQDFISMTCDALRAGK  186 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~  186 (223)
                      .+..  ..+.+.++++++.+|+
T Consensus       157 G~~~--~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         157 GGWK--SVESVPKLVSEYMSKK  176 (176)
T ss_dssp             GGCC--HHHHHHHHHHHHHTTS
T ss_pred             eCCc--HHHHHHHHHHHHHcCC
Confidence            6532  2567888999999885

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.94  E-value=3.2e-26  Score=161.76  Aligned_cols=163  Identities=20%  Similarity=0.168  Sum_probs=132.0

Q ss_pred             hhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           14 VFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++|.++|++.|+|+++.+..  ++|++|+|+  |++|++++|+++..|+ +|++++.+++|++.++ ++|+++++++..
T Consensus         4 e~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~-~~Ga~~~i~~~~   82 (174)
T d1e3ia2           4 ERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-ALGATDCLNPRE   82 (174)
T ss_dssp             HHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCSEEECGGG
T ss_pred             HHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH-HhCCCcccCCcc
Confidence            589999999999999997765  999999999  9999999999999999 7999999999999999 999999998765


Q ss_pred             cccHHHHHHH-hCCCCccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCchHHHHhhcceEEeeecc
Q 043295           89 ETDLKATLKR-YFPDGIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        89 ~~~~~~~i~~-~~~~~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  165 (223)
                      .++..+.+.. ..++|+|++|||+|. ..+..++++++++ |+++.+|.+.+.      ..++...++ .+.++.|+...
T Consensus        83 ~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~------~~i~~~~~~-~~k~i~Gs~~G  155 (174)
T d1e3ia2          83 LDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDE------MTIPTVDVI-LGRSINGTFFG  155 (174)
T ss_dssp             CSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSE------EEEEHHHHH-TTCEEEECSGG
T ss_pred             chhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCc------cccchHHHh-ccCEEEEEEee
Confidence            4234444444 444599999999997 5799999999996 999999976532      234455554 35688887765


Q ss_pred             CccchHHHHHHHHHHHHHcCC
Q 043295          166 DHFDLHQDFISMTCDALRAGK  186 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~  186 (223)
                      .+.  ..+.+.++++++++|+
T Consensus       156 s~~--~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         156 GWK--SVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             GCC--HHHHHHHHHHHHHTTS
T ss_pred             CCC--hHHHHHHHHHHHHCcC
Confidence            531  2567889999999885

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.1e-26  Score=160.86  Aligned_cols=161  Identities=16%  Similarity=0.168  Sum_probs=135.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +++| ++..++.|||+++++.. ++|++|+|+  |++|++++|+++..|+ +|++++++++|++.++ ++|+++++++.+
T Consensus         3 ~e~A-al~epla~a~~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~-~~Ga~~~~~~~~   80 (171)
T d1pl8a2           3 FEEG-ALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EIGADLVLQISK   80 (171)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCSEEEECSS
T ss_pred             HHHH-HHHHHHHHHHHHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH-HhCCcccccccc
Confidence            4454 46689999999999888 999999999  9999999999999999 8999999999999999 999999998887


Q ss_pred             cccHHHHHHHh---CCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           89 ETDLKATLKRY---FPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        89 ~~~~~~~i~~~---~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      . +..+..+..   .+.++|++|||+|+ ..++.++.+++++|+++.+|.+..      ...+++..++.+++++.|+..
T Consensus        81 ~-~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~------~~~~~~~~~~~k~l~i~Gs~~  153 (171)
T d1pl8a2          81 E-SPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSE------MTTVPLLHAAIREVDIKGVFR  153 (171)
T ss_dssp             C-CHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCS------CCCCCHHHHHHTTCEEEECCS
T ss_pred             c-ccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCC------CCccCHHHHHHCCcEEEEEeC
Confidence            6 555444433   33489999999997 478999999999999999997653      346788899999999999864


Q ss_pred             cCccchHHHHHHHHHHHHHcCCCC
Q 043295          165 TDHFDLHQDFISMTCDALRAGKIQ  188 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~i~  188 (223)
                      ..      +.++++++++++|+++
T Consensus       154 ~~------~~~~~al~li~~gkid  171 (171)
T d1pl8a2         154 YC------NTWPVAISMLASKSVN  171 (171)
T ss_dssp             CS------SCHHHHHHHHHTTSCC
T ss_pred             CH------hHHHHHHHHHHcCCCC
Confidence            32      2367889999999874

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.94  E-value=1e-25  Score=159.23  Aligned_cols=160  Identities=17%  Similarity=0.185  Sum_probs=131.5

Q ss_pred             hhhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC-
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE-   88 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~-   88 (223)
                      +++ |++..++.|||+++.+.. ++|++|+|+  |++|++++|+|+..|++|++++++++|++.++ ++|++..++++. 
T Consensus         3 ~e~-Aal~ePla~a~~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~-~~ga~~~~~~~~~   80 (170)
T d1e3ja2           3 LEE-GALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NCGADVTLVVDPA   80 (170)
T ss_dssp             HHH-HHTHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSEEEECCTT
T ss_pred             HHH-HHHHHHHHHHHHHHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHH-HcCCcEEEecccc
Confidence            444 456678999999999888 999999999  99999999999999999999999999999999 999987765443 


Q ss_pred             -c--ccHHHHHHHhCCCCccEEEcCCChH-HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           89 -E--TDLKATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        89 -~--~~~~~~i~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                       .  .+..+.++...++++|++|||+|++ .++.++++++++|+++.+|.+..      ...+++..++.+++++.|+..
T Consensus        81 ~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~------~~~~~~~~~~~k~i~i~gs~~  154 (170)
T d1e3ja2          81 KEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQ------MVTVPLVNACAREIDIKSVFR  154 (170)
T ss_dssp             TSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSS------CCCCCHHHHHTTTCEEEECCS
T ss_pred             ccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCC------CCCcCHHHHHHCCCEEEEEEC
Confidence             1  1234555556666999999999984 68999999999999999997653      336778889999999999864


Q ss_pred             cCccchHHHHHHHHHHHHHcCC
Q 043295          165 TDHFDLHQDFISMTCDALRAGK  186 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~  186 (223)
                      ..      +.++++++++++|+
T Consensus       155 ~~------~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         155 YC------NDYPIALEMVASGR  170 (170)
T ss_dssp             CS------SCHHHHHHHHHTTS
T ss_pred             CH------HHHHHHHHHHHcCC
Confidence            43      23677888888875

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.94  E-value=5.6e-26  Score=160.73  Aligned_cols=164  Identities=17%  Similarity=0.166  Sum_probs=130.7

Q ss_pred             hhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           14 VFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      .+||.+.|++.|+|+++.+..  ++|++|+|+  |++|++++|+|+..|+ +|++++.+++|++.++ ++|+++++|+++
T Consensus         3 ~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~-~lGa~~~i~~~~   81 (174)
T d1p0fa2           3 LESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-ELGATECLNPKD   81 (174)
T ss_dssp             GGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HTTCSEEECGGG
T ss_pred             HHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH-HcCCcEEEcCCC
Confidence            368999999999999987765  999999999  9999999999999998 8999999999999999 999999999876


Q ss_pred             ccc-HHHHHHHhCCCCccEEEcCCCh-HHHHHHHHhhcc-CcEEEEEcccccccccccCCCCchHHHHhhcceEEeeecc
Q 043295           89 ETD-LKATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNL-FGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLST  165 (223)
Q Consensus        89 ~~~-~~~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~-~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  165 (223)
                      .+. ..+..+..+++|+|++||++|+ ..+..++..+.+ +|+++.+|.+...    ...+++.. .+.++.++.|+...
T Consensus        82 ~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~----~~~~~~~~-~~~~~~~i~Gs~~G  156 (174)
T d1p0fa2          82 YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPN----ERLPLDPL-LLLTGRSLKGSVFG  156 (174)
T ss_dssp             CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTT----CCEEECTH-HHHTTCEEEECSGG
T ss_pred             chhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCc----cccccCHH-HHhCCCEEEEEEeC
Confidence            523 4444455555699999999997 567888887766 5999999976532    22233333 34567899998765


Q ss_pred             CccchHHHHHHHHHHHHHcCC
Q 043295          166 DHFDLHQDFISMTCDALRAGK  186 (223)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~g~  186 (223)
                      .+.   .++++++++++.+|+
T Consensus       157 ~~~---~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         157 GFK---GEEVSRLVDDYMKKK  174 (174)
T ss_dssp             GCC---GGGHHHHHHHHHTTS
T ss_pred             CCC---HHHHHHHHHHHHcCC
Confidence            531   346788999998885

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.94  E-value=1.3e-25  Score=159.54  Aligned_cols=168  Identities=16%  Similarity=0.127  Sum_probs=131.0

Q ss_pred             hhhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeec
Q 043295           12 CYVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNY   86 (223)
Q Consensus        12 ~~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~   86 (223)
                      ++++||.++|++.|+|+++.+..  ++|++|+|+  |++|.+++|+++..|+ +|++++.+++|++.++ ++|+++++++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~-~~Ga~~~i~~   80 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK-EVGATECVNP   80 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCSEEECG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH-HhCCeeEEec
Confidence            46789999999999999998776  999999999  9999999999999986 9999999999999999 9999999987


Q ss_pred             CCcccHH-HHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           87 KEETDLK-ATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        87 ~~~~~~~-~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      .+.++.. +.++...++|+|++||++|. ..+..++..++++|..+.++.....    .........++.++.++.|+..
T Consensus        81 ~~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~i~Gs~~  156 (176)
T d2jhfa2          81 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPD----SQNLSMNPMLLLSGRTWKGAIF  156 (176)
T ss_dssp             GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCT----TCCEEECTHHHHTTCEEEECSG
T ss_pred             CCchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCC----cccccccHHHHhCCCEEEEEEE
Confidence            6542444 44444555599999999997 4678889999887555444433221    1112233456678999999876


Q ss_pred             cCccchHHHHHHHHHHHHHcCC
Q 043295          165 TDHFDLHQDFISMTCDALRAGK  186 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~  186 (223)
                      ..+  ..++.+.++++++.+|+
T Consensus       157 G~~--~~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         157 GGF--KSKDSVPKLVADFMAKK  176 (176)
T ss_dssp             GGC--CHHHHHHHHHHHHHTTS
T ss_pred             eCC--CHHHHHHHHHHHHHCcC
Confidence            543  22667888999998875

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.93  E-value=3.1e-25  Score=157.43  Aligned_cols=166  Identities=15%  Similarity=0.083  Sum_probs=132.5

Q ss_pred             hhhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeec
Q 043295           12 CYVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNY   86 (223)
Q Consensus        12 ~~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~   86 (223)
                      ++++||.++|++.|+|+++.+..  ++|++|+|+  |++|.++++.++..|+ +|++++++++|++.++ ++|+++++|+
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~-~~GAd~~in~   80 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VFGATDFVNP   80 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTTCCEEECG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH-HcCCcEEEcC
Confidence            36789999999999999998766  999999999  9999999999999988 8999999999999999 9999999998


Q ss_pred             CCcccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEE-EEcccccccccccCCCCchHHHHhhcceEEeee
Q 043295           87 KEETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVA-ACGVISECADASKRAVPNMIDIVYKRIKIQGFL  163 (223)
Q Consensus        87 ~~~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  163 (223)
                      .+.++..+.++..+.+ |+|+++|++|+ ..+..++.+++++|..+ ..+....      .........+.++.++.|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~------~~~~~~~~~~~~~~~i~Gs~  154 (175)
T d1cdoa2          81 NDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL------HDVATRPIQLIAGRTWKGSM  154 (175)
T ss_dssp             GGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSS------SCEEECHHHHHTTCEEEECS
T ss_pred             CCcchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCC------cccCccHHHHHCCcEEEEEE
Confidence            7653455666666555 99999999997 56778888877775554 4544332      22334556667889999987


Q ss_pred             ccCccchHHHHHHHHHHHHHcCC
Q 043295          164 STDHFDLHQDFISMTCDALRAGK  186 (223)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~g~  186 (223)
                      ...+.  .++.+.++++++.+|+
T Consensus       155 ~G~~~--~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         155 FGGFK--GKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             GGGCC--HHHHHHHHHHHHHTTS
T ss_pred             EeCCc--HHHHHHHHHHHHHcCC
Confidence            66532  3678889999999885

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=1e-26  Score=162.78  Aligned_cols=139  Identities=24%  Similarity=0.328  Sum_probs=114.5

Q ss_pred             cchhhHHHHHHH---Hh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccH
Q 043295           21 TSGFTAYVGFYE---IS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDL   92 (223)
Q Consensus        21 ~~~~ta~~~l~~---~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   92 (223)
                      ++++|||.+++.   ..  +++++|||+   |+||.+++|+||.+|++|++++++++|.++++ ++|++.++++++.  .
T Consensus         3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~-~lGad~vi~~~~~--~   79 (167)
T d1tt7a2           3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK-QLGASEVISREDV--Y   79 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH-HHTCSEEEEHHHH--C
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHH-hhcccceEeccch--h
Confidence            467788866543   33  678899999   99999999999999999999999999999999 9999999987642  2


Q ss_pred             HHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhhcceEEeeeccCc
Q 043295           93 KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDH  167 (223)
Q Consensus        93 ~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  167 (223)
                      .+.++...++++|+|||++|++.+..++++|+++|+++.+|...+.     ..+.+...++.+++++.|+.....
T Consensus        80 ~~~~~~~~~~gvd~vid~vgg~~~~~~~~~l~~~G~iv~~G~~~g~-----~~~~~~~~l~~k~~~i~G~~~~~~  149 (167)
T d1tt7a2          80 DGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGG-----EVPATVYPFILRGVSLLGIDSVYC  149 (167)
T ss_dssp             SSCCCSSCCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSCS-----CEEECSHHHHTSCCEEEECCSSSC
T ss_pred             chhhhcccCCCceEEEecCcHHHHHHHHHHhccCceEEEeeccCCC-----cccCCHHHHHHCCcEEEEEecCCC
Confidence            2233333344999999999999999999999999999999987753     335678889999999999765543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.93  E-value=5.6e-25  Score=155.74  Aligned_cols=163  Identities=16%  Similarity=0.156  Sum_probs=129.7

Q ss_pred             hhhhhccccchhhHHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      ++.||.++|++.|+|+++.+..  ++|++|+|+  |++|++++|+++..|+ +|++++.+++|++.++ ++|+++++|+.
T Consensus         4 ~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak-~~GA~~~in~~   82 (176)
T d1d1ta2           4 PEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM-AVGATECISPK   82 (176)
T ss_dssp             HHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HHTCSEEECGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHH-hcCCcEEECcc
Confidence            6799999999999999987765  999999999  9999999999999997 8999999999999999 99999999988


Q ss_pred             CcccHHHHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccC-cEEEEEcccccccccccCCCCchHHHHhhcceEEeeec
Q 043295           88 EETDLKATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLF-GRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLS  164 (223)
Q Consensus        88 ~~~~~~~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  164 (223)
                      +.+...+.+.+.+.+ |+|++||++|+ +.+..++..+.++ |+++.+|.+...    ....+++. .+.++.+++|+..
T Consensus        83 ~~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~----~~~~~~~~-~~~~~~~i~Gs~~  157 (176)
T d1d1ta2          83 DSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSA----KMLTYDPM-LLFTGRTWKGCVF  157 (176)
T ss_dssp             GCSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTT----CCEEECTH-HHHTTCEEEECSG
T ss_pred             ccchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccc----cccCCCHH-HHhCCCEEEEEEE
Confidence            753445666666666 99999999997 4677778777655 999999976542    12223333 3446789999876


Q ss_pred             cCccchHHHHHHHHHHHHH
Q 043295          165 TDHFDLHQDFISMTCDALR  183 (223)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (223)
                      .+..  .++++.++++++.
T Consensus       158 G~~~--~~~dip~li~~~~  174 (176)
T d1d1ta2         158 GGLK--SRDDVPKLVTEFL  174 (176)
T ss_dssp             GGCC--HHHHHHHHHHHHT
T ss_pred             eCCC--cHHHHHHHHHHHh
Confidence            5531  1566777777654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=2.7e-24  Score=154.50  Aligned_cols=166  Identities=16%  Similarity=0.099  Sum_probs=136.0

Q ss_pred             hhhhccccchhhHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCc
Q 043295           14 VFANGAGTSGFTAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEE   89 (223)
Q Consensus        14 ~~aa~l~~~~~ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~   89 (223)
                      ++.++|+.++.|||+++.+.. ++|++|+|+  |++|++++|+|+..|+ +|++++.+++|++.++ ++|+++++++.+.
T Consensus         2 ~d~~~l~d~~~ta~~a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~-~~Ga~~~~~~~~~   80 (195)
T d1kola2           2 RDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-AQGFEIADLSLDT   80 (195)
T ss_dssp             HHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCEEEETTSSS
T ss_pred             chHHhcccHHHHHHHHHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh-hccccEEEeCCCc
Confidence            478899999999999998777 999999999  9999999999999998 8999999999999999 9999999999887


Q ss_pred             ccHHHHHHHhCCC-CccEEEcCCCh----------------HHHHHHHHhhccCcEEEEEccccccccc-------ccCC
Q 043295           90 TDLKATLKRYFPD-GIDVYFDNVGG----------------EMLEAAVANMNLFGRVAACGVISECADA-------SKRA  145 (223)
Q Consensus        90 ~~~~~~i~~~~~~-~~d~vid~~g~----------------~~~~~~~~~l~~~G~~v~~g~~~~~~~~-------~~~~  145 (223)
                       ++.+.+.+.+++ |+|++|||+|.                +.++.++++++++|+++.+|........       ....
T Consensus        81 -~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~~~~  159 (195)
T d1kola2          81 -PLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSL  159 (195)
T ss_dssp             -CHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCC
T ss_pred             -CHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhcCce
Confidence             999999999988 99999999983                4799999999999999999975432110       1122


Q ss_pred             CCchHHHHhhcceEEeeeccCccchHHHHHHHHHHHHHcCC
Q 043295          146 VPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGK  186 (223)
Q Consensus       146 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  186 (223)
                      .+.+..++.+++++.+-..     ..++.++++++++.+++
T Consensus       160 ~~~~~~~~~k~~~i~~g~~-----~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         160 SIRFGLGWAKSHSFHTGQT-----PVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             CCCHHHHHHTTCEEEESSC-----CHHHHHHHHHHHHHTTS
T ss_pred             eeeHHHHHhhcceeccCCC-----chHHHHHHHHHHHHcCC
Confidence            3455566778887654222     12556778888887664

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=2e-16  Score=94.45  Aligned_cols=67  Identities=27%  Similarity=0.307  Sum_probs=61.8

Q ss_pred             hhhhhccccchhhHHHHHHHHh-----hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC
Q 043295           13 YVFANGAGTSGFTAYVGFYEIS-----QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF   80 (223)
Q Consensus        13 ~~~aa~l~~~~~ta~~~l~~~~-----~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~   80 (223)
                      ++++++++++++|||++++...     +++++|||+   |+||.+++|+++..|++|+++++++++.++++ ++|+
T Consensus         3 ~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~-~lGA   77 (77)
T d1o8ca2           3 ARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK-SLGA   77 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH-HHTE
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHH-HCCC
Confidence            5699999999999999987654     789999999   99999999999999999999999999999999 8885

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.29  E-value=4e-06  Score=56.48  Aligned_cols=100  Identities=17%  Similarity=0.135  Sum_probs=74.4

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC-
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-  112 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-  112 (223)
                      +.-+|+|.  |.+|+.|++.|+.+|+.|.+.+.+.++++.++..++......+.+...+.+.+++     .|+||.++- 
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-----aDivI~aali  105 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAE-----ADLLIGAVLV  105 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHT-----CSEEEECCCC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhcc-----CcEEEEeeec
Confidence            45788888  9999999999999999999999999999999844443222222222145554543     899999874 


Q ss_pred             --hH----HHHHHHHhhccCcEEEEEcccccccc
Q 043295          113 --GE----MLEAAVANMNLFGRVAACGVISECAD  140 (223)
Q Consensus       113 --~~----~~~~~~~~l~~~G~~v~~g~~~~~~~  140 (223)
                        ..    .-+..+..|++|..+|.+....+.+.
T Consensus       106 pG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~~  139 (168)
T d1pjca1         106 PGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCV  139 (168)
T ss_dssp             TTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSB
T ss_pred             CCcccCeeecHHHHhhcCCCcEEEEeecCCCCcc
Confidence              21    35688899999999999987766554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.90  E-value=2.3e-05  Score=53.40  Aligned_cols=104  Identities=14%  Similarity=0.036  Sum_probs=74.4

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee-ecCCc------------------ccHH
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF-NYKEE------------------TDLK   93 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~-~~~~~------------------~~~~   93 (223)
                      -+.-+|+|.  |.+|+.|++.|+.+|+.|.+.+.+.++++.++ +++...+. ++...                  ....
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~-~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVE-SLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH-HTTCEECCC-----------------------CCHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH-HhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            345688888  99999999999999999999999999999999 88764431 00000                  0112


Q ss_pred             HHHHHhCCCCccEEEcCCC---hH----HHHHHHHhhccCcEEEEEcccccccc
Q 043295           94 ATLKRYFPDGIDVYFDNVG---GE----MLEAAVANMNLFGRVAACGVISECAD  140 (223)
Q Consensus        94 ~~i~~~~~~~~d~vid~~g---~~----~~~~~~~~l~~~G~~v~~g~~~~~~~  140 (223)
                      +.+.+... ..|+||-++-   ..    .-+.....|++|..+|.+....+.+.
T Consensus       106 ~~l~~~l~-~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~  158 (183)
T d1l7da1         106 EAVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNC  158 (183)
T ss_dssp             HHHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             HHHHHHHH-hhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCcc
Confidence            22322222 4899998773   21    35688899999999999998776554

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.77  E-value=4.5e-05  Score=55.02  Aligned_cols=77  Identities=12%  Similarity=0.170  Sum_probs=56.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCC--CCccEEEc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFP--DGIDVYFD  109 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~--~~~d~vid  109 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++++.+.++++...+ .|-.+.++..+.+.+...  +++|++++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn   83 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEEE
Confidence            57899999   7899999999999999999999999998888767776332 344443233333333222  36999999


Q ss_pred             CCC
Q 043295          110 NVG  112 (223)
Q Consensus       110 ~~g  112 (223)
                      +.|
T Consensus        84 nAG   86 (242)
T d1ulsa_          84 YAG   86 (242)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            876

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.70  E-value=0.00066  Score=45.37  Aligned_cols=94  Identities=20%  Similarity=0.225  Sum_probs=64.7

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      -.+.+|||.  |.+|...++.....|+ +++.+.|+.++.+.+.+++|. .+.++.   ++.+.+.+     +|+||.|+
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~-~~~~~~---~~~~~l~~-----~Divi~at   92 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG-EAVRFD---ELVDHLAR-----SDVVVSAT   92 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC-EECCGG---GHHHHHHT-----CSEEEECC
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc-ccccch---hHHHHhcc-----CCEEEEec
Confidence            578899999  9999988888888898 688889998876655548885 344443   45555543     99999999


Q ss_pred             ChH-------HHHHHHHhhccCc--EEEEEccccc
Q 043295          112 GGE-------MLEAAVANMNLFG--RVAACGVISE  137 (223)
Q Consensus       112 g~~-------~~~~~~~~l~~~G--~~v~~g~~~~  137 (223)
                      +++       .+...+..-..+.  .++.++.|..
T Consensus        93 ss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~  127 (159)
T d1gpja2          93 AAPHPVIHVDDVREALRKRDRRSPILIIDIANPRD  127 (159)
T ss_dssp             SSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCS
T ss_pred             CCCCccccHhhhHHHHHhcccCCCeEEEeecCCCC
Confidence            853       2333333323333  5777776653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.70  E-value=0.00013  Score=50.55  Aligned_cols=74  Identities=19%  Similarity=0.148  Sum_probs=54.4

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhC----C-CeeeecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG----F-DDAFNYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g----~-~~~~~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      -+|++++|+   |++|..+++.+...|++|+.++++.++.+.+.+++.    . ....|..+.    +.+.+..+ ++|+
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~~-~iDi   95 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADD----ASRAEAVK-GAHF   95 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSH----HHHHHHTT-TCSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccH----HHHHHHhc-CcCe
Confidence            589999999   899999999999999999999999988876654432    2 222343332    33444433 5999


Q ss_pred             EEcCCCh
Q 043295          107 YFDNVGG  113 (223)
Q Consensus       107 vid~~g~  113 (223)
                      +|++.|.
T Consensus        96 lin~Ag~  102 (191)
T d1luaa1          96 VFTAGAI  102 (191)
T ss_dssp             EEECCCT
T ss_pred             eeecCcc
Confidence            9999873

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00017  Score=51.95  Aligned_cols=75  Identities=16%  Similarity=0.159  Sum_probs=55.1

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe--eeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD--AFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++++.+.++++...  ..|-.+. +-.+++.+.. +++|+++++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~-~~v~~~~~~~-g~iDilVnn   83 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDW-EATERALGSV-GPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCH-HHHHHHHTTC-CCCCEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCH-HHHHHHHHHh-CCceEEEec
Confidence            68999999   899999999999999999999999999887775665422  2344443 2233332222 379999988


Q ss_pred             CC
Q 043295          111 VG  112 (223)
Q Consensus       111 ~g  112 (223)
                      .|
T Consensus        84 Ag   85 (244)
T d1pr9a_          84 AA   85 (244)
T ss_dssp             CC
T ss_pred             cc
Confidence            76

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=5.5e-05  Score=54.60  Aligned_cols=103  Identities=18%  Similarity=0.370  Sum_probs=69.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe---eeecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD---AFNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      +|++++|+   +++|.+.++.....|++|+.+++++++++.+.++++...   ..|-.+.++..+.+.+...  +++|++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   82 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDIL   82 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCccee
Confidence            57889999   899999999999999999999999999888776776522   2344443233333333222  379999


Q ss_pred             EcCCChH-----------HH---------------HHHHHhh--ccCcEEEEEcccccc
Q 043295          108 FDNVGGE-----------ML---------------EAAVANM--NLFGRVAACGVISEC  138 (223)
Q Consensus       108 id~~g~~-----------~~---------------~~~~~~l--~~~G~~v~~g~~~~~  138 (223)
                      +++.|..           .+               +.+++.|  +.+|+++.++.....
T Consensus        83 VnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~  141 (243)
T d1q7ba_          83 VNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGT  141 (243)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred             hhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhc
Confidence            9887531           11               1244555  346999999876543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.65  E-value=7.1e-05  Score=54.02  Aligned_cols=103  Identities=19%  Similarity=0.168  Sum_probs=69.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      +|++++|+   +++|.+.++.....|++|+.+++++++.+.+.++++....   .|-.+.++..+.+.+...  +++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idil   84 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL   84 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCeEE
Confidence            57899999   8899999999999999999999999998877767654222   343343233333333322  369999


Q ss_pred             EcCCChH-----------HHH---------------HHHHhh--ccCcEEEEEcccccc
Q 043295          108 FDNVGGE-----------MLE---------------AAVANM--NLFGRVAACGVISEC  138 (223)
Q Consensus       108 id~~g~~-----------~~~---------------~~~~~l--~~~G~~v~~g~~~~~  138 (223)
                      +++.|..           .++               .++..+  +.+|++|.++.....
T Consensus        85 innAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~  143 (244)
T d1nffa_          85 VNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGL  143 (244)
T ss_dssp             EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             EECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccc
Confidence            9988731           111               223344  346899999876654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.61  E-value=8e-05  Score=54.16  Aligned_cols=77  Identities=12%  Similarity=0.223  Sum_probs=56.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      +|++++|+   +++|.+.++.....|++|+.+++++++.+.+.+++|....   .|-.+.++..+.+.+...  +++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDil   83 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDIL   83 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence            57889999   8999999999999999999999999988877768876432   344443233333333322  379999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        84 VnnAg   88 (256)
T d1k2wa_          84 VNNAA   88 (256)
T ss_dssp             EECCC
T ss_pred             Eeecc
Confidence            99887

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.60  E-value=8.8e-05  Score=54.55  Aligned_cols=77  Identities=23%  Similarity=0.264  Sum_probs=55.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++++.+.+++|....   .|..+.++..+.+.+...  +++|++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idil   83 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTL   83 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCcccc
Confidence            57899999   8999999999999999999999999998877767765322   243433223333333222  369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        84 vnnAG   88 (276)
T d1bdba_          84 IPNAG   88 (276)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            98876

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00012  Score=53.05  Aligned_cols=77  Identities=19%  Similarity=0.182  Sum_probs=54.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CCccEEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++.+.+.++++....  .|-.+.++..+.+.+...  +++|+++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilV   84 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   84 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            58899999   8999999999999999999999999998888755553222  343343233333333222  3699999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        85 nnAG   88 (250)
T d1ydea1          85 NNAG   88 (250)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            8876

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=0.00026  Score=50.85  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=53.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee--eecCCcccHHHHHHHhCC--CCccEEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA--FNYKEETDLKATLKRYFP--DGIDVYF  108 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~--~~~d~vi  108 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++++.+.++++....  .|-.+. +   .+++...  +++|+++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~-~---~v~~~~~~~g~iDilV   79 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDW-D---ATEKALGGIGPVDLLV   79 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCH-H---HHHHHHTTCCCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCH-H---HHHHHHHHcCCCeEEE
Confidence            58899999   7999999999999999999999999988777656544222  344443 2   2333333  3799999


Q ss_pred             cCCC
Q 043295          109 DNVG  112 (223)
Q Consensus       109 d~~g  112 (223)
                      ++.|
T Consensus        80 nnAg   83 (242)
T d1cyda_          80 NNAA   83 (242)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            9876

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=0.00029  Score=52.06  Aligned_cols=94  Identities=11%  Similarity=0.088  Sum_probs=66.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEE--
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYF--  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi--  108 (223)
                      ++|++||=. .|.|..+..+|+..|++|+++..|+++.+.+++   ..|....+..... ++     ....+.||.|+  
T Consensus        60 ~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~-d~-----~~~~~~fD~i~si  133 (291)
T d1kpia_          60 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ-GW-----EEFDEPVDRIVSL  133 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEEC-CG-----GGCCCCCSEEEEE
T ss_pred             CCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhh-cc-----cccccccceEeec
Confidence            899999999 899999999999999999999999998666552   3455333222211 21     12234689774  


Q ss_pred             ---cCCCh-----------HHHHHHHHhhccCcEEEEEcc
Q 043295          109 ---DNVGG-----------EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 ---d~~g~-----------~~~~~~~~~l~~~G~~v~~g~  134 (223)
                         +.++.           ..++.+.++|+|||+++.-..
T Consensus       134 e~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i  173 (291)
T d1kpia_         134 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  173 (291)
T ss_dssp             SCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred             hhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence               34432           357788899999999986443

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.56  E-value=0.00011  Score=53.27  Aligned_cols=77  Identities=21%  Similarity=0.237  Sum_probs=54.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++.+.+.++++....   .|-.+.++..+.+.+...  +++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   83 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccEE
Confidence            58899999   7999999999889999999999999988877767764322   333333123333332222  369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        84 VnnAg   88 (254)
T d1hdca_          84 VNNAG   88 (254)
T ss_dssp             EECCC
T ss_pred             EecCc
Confidence            98876

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.53  E-value=0.00014  Score=52.78  Aligned_cols=103  Identities=19%  Similarity=0.192  Sum_probs=70.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee---ecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF---NYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++.+.+.++++....+   |-.+.++..+.+.+...  +++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil   84 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence            57889999   78999999999999999999999999988887688764432   33333122222222222  369999


Q ss_pred             EcCCChH-----------HH---------------HHHHHhhc-cCcEEEEEcccccc
Q 043295          108 FDNVGGE-----------ML---------------EAAVANMN-LFGRVAACGVISEC  138 (223)
Q Consensus       108 id~~g~~-----------~~---------------~~~~~~l~-~~G~~v~~g~~~~~  138 (223)
                      +++.|..           .+               +.++..|+ .+|++|.++.....
T Consensus        85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~  142 (253)
T d1hxha_          85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSW  142 (253)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred             EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhh
Confidence            9988731           11               13345554 57999999876653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.50  E-value=0.00015  Score=52.33  Aligned_cols=102  Identities=16%  Similarity=0.134  Sum_probs=69.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCC--CCccEEEc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFP--DGIDVYFD  109 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~--~~~d~vid  109 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++.+.++ +.+...+ .|-.+.++..+.+.+...  +++|++++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVn   82 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAE-AIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVN   82 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHH-HHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence            58899999   89999999999999999999999988877776 7776432 344443222333333222  36999998


Q ss_pred             CCCh-----------HHHH---------------HHHHhhcc--CcEEEEEcccccc
Q 043295          110 NVGG-----------EMLE---------------AAVANMNL--FGRVAACGVISEC  138 (223)
Q Consensus       110 ~~g~-----------~~~~---------------~~~~~l~~--~G~~v~~g~~~~~  138 (223)
                      +.|.           +.++               .++..|.+  +|++|.++.....
T Consensus        83 nAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~  139 (248)
T d2d1ya1          83 NAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL  139 (248)
T ss_dssp             CCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred             eCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccc
Confidence            8762           1111               23455543  5899998876653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.49  E-value=0.00023  Score=52.02  Aligned_cols=77  Identities=16%  Similarity=0.261  Sum_probs=54.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-e--e--eecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-D--A--FNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~--~--~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      +|+.+||+   +++|.+.++.....|++|+.+++++++.+.+.++++.. .  .  .|-.+.++....+.+...  +++|
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   84 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   84 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcc
Confidence            57899999   89999999999999999999999999888777666542 1  1  233333233332332222  3699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++++.|
T Consensus        85 ~lVnnAG   91 (268)
T d2bgka1          85 IMFGNVG   91 (268)
T ss_dssp             EEEECCC
T ss_pred             eeccccc
Confidence            9998876

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.48  E-value=0.00021  Score=50.36  Aligned_cols=100  Identities=12%  Similarity=0.087  Sum_probs=68.8

Q ss_pred             HHHHHh-hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCC
Q 043295           29 GFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDG  103 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~  103 (223)
                      .+.... +++++||.. ++.|-.++-+++..|.+|+++...++-.+.+++   ++|.+.+.-....  ..+..  ...+.
T Consensus        70 ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd--~~~g~--~~~~p  145 (215)
T d1jg1a_          70 MLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGD--GSKGF--PPKAP  145 (215)
T ss_dssp             HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC--GGGCC--GGGCC
T ss_pred             HHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECc--cccCC--cccCc
Confidence            455555 999999999 899999999999999899999988765444442   5676655332221  11100  11127


Q ss_pred             ccEEEcCCCh-HHHHHHHHhhccCcEEEEE
Q 043295          104 IDVYFDNVGG-EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       104 ~d~vid~~g~-~~~~~~~~~l~~~G~~v~~  132 (223)
                      ||.|+-+.+- ..-...++.|++||++|..
T Consensus       146 fD~Iiv~~a~~~ip~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         146 YDVIIVTAGAPKIPEPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             EEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             ceeEEeecccccCCHHHHHhcCCCCEEEEE
Confidence            9999866553 3345678899999999874

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.47  E-value=0.0002  Score=51.45  Aligned_cols=77  Identities=12%  Similarity=0.135  Sum_probs=56.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      +|+++||+   +++|.+.++-....|++|+.++++.++.+.+.++++....   .|-.+.++..+.+.+...  +++|+.
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDiL   83 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV   83 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccEe
Confidence            58899999   7899999999999999999999999988877767776432   244443233333333322  369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        84 innAg   88 (241)
T d2a4ka1          84 AHFAG   88 (241)
T ss_dssp             EEGGG
T ss_pred             ccccc
Confidence            98876

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.47  E-value=0.00027  Score=51.28  Aligned_cols=78  Identities=18%  Similarity=0.223  Sum_probs=55.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCe---eeecCCcc---cHHHHHHHhCCCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDD---AFNYKEET---DLKATLKRYFPDG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~---~~~~~i~~~~~~~  103 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++++.+.++   .+...   ..|-.+.+   .+.+.+.+..++.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~   84 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   84 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            58899999   8999999999999999999999999887655433   33322   23444431   2334445555557


Q ss_pred             ccEEEcCCCh
Q 043295          104 IDVYFDNVGG  113 (223)
Q Consensus       104 ~d~vid~~g~  113 (223)
                      +|+++++.|.
T Consensus        85 idilinnag~   94 (258)
T d1ae1a_          85 LNILVNNAGV   94 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             cEEEeccccc
Confidence            9999988763

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.45  E-value=0.00045  Score=50.83  Aligned_cols=94  Identities=12%  Similarity=0.086  Sum_probs=65.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEE--
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYF--  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi--  108 (223)
                      ++|++||=. .|.|..+..+|+..|++|+++..|+++.+.+++.   .|...-+..... ++    +. .++.+|.|+  
T Consensus        61 ~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~-d~----~~-~~~~fD~i~si  134 (285)
T d1kpga_          61 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-GW----EQ-FDEPVDRIVSI  134 (285)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-CG----GG-CCCCCSEEEEE
T ss_pred             CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHh-hh----hc-ccccccceeee
Confidence            899999999 8999999999999999999999999988877632   232111111111 21    11 123577663  


Q ss_pred             ---cCCCh----HHHHHHHHhhccCcEEEEEcc
Q 043295          109 ---DNVGG----EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 ---d~~g~----~~~~~~~~~l~~~G~~v~~g~  134 (223)
                         +.+|.    ..+..+.++|+|||+++.-..
T Consensus       135 ~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         135 GAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             SCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             hhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence               45553    257788899999999986443

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=0.00031  Score=49.45  Aligned_cols=100  Identities=22%  Similarity=0.171  Sum_probs=67.5

Q ss_pred             HHHHHh-hCCCEEEEE-CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCC
Q 043295           29 GFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFP  101 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~  101 (223)
                      .+.... ++|++||-. ++.|..++.+|+..|.  +|++++.+++..+.+++.   .+...+.-...  +..+..  ...
T Consensus        67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~--d~~~~~--~~~  142 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG--DGYYGV--PEF  142 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES--CGGGCC--GGG
T ss_pred             HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccC--chHHcc--ccc
Confidence            455555 999999999 8889999999998864  899999998877777632   34433321111  111000  011


Q ss_pred             CCccEEEcCCChH-HHHHHHHhhccCcEEEEE
Q 043295          102 DGIDVYFDNVGGE-MLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       102 ~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~  132 (223)
                      +.||+|+.+.+-. ..+..++.|+|||+++..
T Consensus       143 ~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         143 SPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             CCEEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             cchhhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence            2699998766643 345678899999999874

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.41  E-value=0.00024  Score=51.34  Aligned_cols=77  Identities=14%  Similarity=0.192  Sum_probs=54.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC-Cee----eecCCccc---HHHHHHHhCCCCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF-DDA----FNYKEETD---LKATLKRYFPDGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~-~~~----~~~~~~~~---~~~~i~~~~~~~~  104 (223)
                      +|+.+||+   +++|.+.++.....|++|+.+++++++.+.+.++++. ..+    .|-.+.++   +.+.+.+.. +++
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~-G~i   83 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF-GPV   83 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH-SSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHh-CCc
Confidence            57889999   8999999999999999999999999988877756653 111    23333312   233333332 379


Q ss_pred             cEEEcCCCh
Q 043295          105 DVYFDNVGG  113 (223)
Q Consensus       105 d~vid~~g~  113 (223)
                      |+++++.|.
T Consensus        84 DiLVnnAg~   92 (251)
T d1zk4a1          84 STLVNNAGI   92 (251)
T ss_dssp             CEEEECCCC
T ss_pred             eEEEecccc
Confidence            999998863

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.0003  Score=50.04  Aligned_cols=98  Identities=9%  Similarity=-0.085  Sum_probs=65.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC-CeeeecCCcccHHHHHHHhCCCCccEE-EcCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF-DDAFNYKEETDLKATLKRYFPDGIDVY-FDNV  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~~~~d~v-id~~  111 (223)
                      ++|.+||-. .|.|..+..+++..+.+|+++..++.-++.+++.... ...+..... +..........+.+|.+ +|.+
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG-LWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES-CHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccc-cccccccccccccccceeeccc
Confidence            889999999 8999999999987777999999999999888833221 111111111 23333333333478887 4654


Q ss_pred             Ch-----------HHHHHHHHhhccCcEEEEEc
Q 043295          112 GG-----------EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 g~-----------~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ..           ..+..+.++|+|||.++...
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            32           13456778999999998653

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.0002  Score=51.67  Aligned_cols=75  Identities=15%  Similarity=0.258  Sum_probs=55.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-eeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++++.+.+..+.. ...|.... +..+...+..+ ++|+++++.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~-~id~lVn~a   82 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKK-KQIDQFANEVE-RLDVLFNVA   82 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCH-HHHHHHHHHCS-CCSEEEECC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeecccc-ccccccccccc-cceeEEecc
Confidence            57899999   89999999999999999999999999888777444432 22343333 44555444433 689999887


Q ss_pred             C
Q 043295          112 G  112 (223)
Q Consensus       112 g  112 (223)
                      |
T Consensus        83 g   83 (245)
T d2ag5a1          83 G   83 (245)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00037  Score=50.46  Aligned_cols=103  Identities=16%  Similarity=0.173  Sum_probs=67.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC----Cee----eecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF----DDA----FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~----~~~----~~~~~~~~~~~~i~~~~~--~  102 (223)
                      .|+++||+   +++|.+.++.....|++|+.++++.++.+.+.+++..    ..+    .|-.+.++..+.+.+...  +
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            58899999   8999999999999999999999999887766544421    111    344443233333333322  3


Q ss_pred             CccEEEcCCCh---HHH---------------HHHHHhhcc-----CcEEEEEcccccc
Q 043295          103 GIDVYFDNVGG---EML---------------EAAVANMNL-----FGRVAACGVISEC  138 (223)
Q Consensus       103 ~~d~vid~~g~---~~~---------------~~~~~~l~~-----~G~~v~~g~~~~~  138 (223)
                      ++|+++++.|.   +.+               ..++..|.+     +|+++.++...+.
T Consensus        82 ~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~  140 (254)
T d2gdza1          82 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGL  140 (254)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT
T ss_pred             CcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhc
Confidence            79999999873   111               123344432     4889998876553

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.39  E-value=0.0004  Score=50.42  Aligned_cols=77  Identities=14%  Similarity=0.209  Sum_probs=53.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCcccH---HHHHHHhCCCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETDL---KATLKRYFPDG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~---~~~i~~~~~~~  103 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++++.+.+++   |....   .|-.+.++.   .+.+.+..+++
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~   86 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   86 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence            58899999   78999999999999999999999998876665443   33221   333333122   23333334447


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        87 idilvnnAG   95 (259)
T d2ae2a_          87 LNILVNNAG   95 (259)
T ss_dssp             CCEEEECCC
T ss_pred             ceEEEECCc
Confidence            999999887

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.35  E-value=0.00067  Score=45.71  Aligned_cols=71  Identities=17%  Similarity=0.110  Sum_probs=53.1

Q ss_pred             HHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCc
Q 043295           29 GFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGI  104 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~  104 (223)
                      +|.+.. .++++|+|.  |+.+.+++.-++..|+ +|+.+.|+.++.+.+.+.++...+-....             ..+
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~~-------------~~~   74 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLEN-------------QQA   74 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCTT-------------CCC
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcccc-------------cch
Confidence            344444 677899999  9999999999999998 89999999998887775666543311111             148


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |++++|+.
T Consensus        75 DliINaTp   82 (167)
T d1npya1          75 DILVNVTS   82 (167)
T ss_dssp             SEEEECSS
T ss_pred             hhheeccc
Confidence            99999875

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.35  E-value=0.00048  Score=49.60  Aligned_cols=93  Identities=9%  Similarity=0.025  Sum_probs=66.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHhh---C-CCeeeecCCcccHHHHHHHhCCC-CccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEKL---G-FDDAFNYKEETDLKATLKRYFPD-GIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~~---g-~~~~~~~~~~~~~~~~i~~~~~~-~~d~  106 (223)
                      +||++||=. .|.|.++..+|+..|  .+|++++.+++..+.+++.+   + ...+- .... ++.    +...+ .+|.
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~-~~~~-Di~----~~~~~~~fD~  157 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVR-TSRS-DIA----DFISDQMYDA  157 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEE-EECS-CTT----TCCCSCCEEE
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceE-EEEe-eee----cccccceeee
Confidence            999999999 888999999999875  48999999999888887432   2 23321 1111 222    22233 7998


Q ss_pred             EE-cCCCh-HHHHHHHHhhccCcEEEEEc
Q 043295          107 YF-DNVGG-EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       107 vi-d~~g~-~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+ |.... ..+..+.+.|+|||+++.+.
T Consensus       158 V~ld~p~p~~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         158 VIADIPDPWNHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             EEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             eeecCCchHHHHHHHHHhcCCCceEEEEe
Confidence            86 44433 47899999999999998764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.34  E-value=0.0003  Score=51.09  Aligned_cols=77  Identities=18%  Similarity=0.261  Sum_probs=52.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++++.+.+++   |....   .|-.+.++..+.+.+...  +++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            58899999   79999999999999999999999998877665443   43221   333333233333333222  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        84 DilVnnaG   91 (260)
T d1zema1          84 DFLFNNAG   91 (260)
T ss_dssp             CEEEECCC
T ss_pred             Ceehhhhc
Confidence            99998776

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.004  Score=41.33  Aligned_cols=111  Identities=13%  Similarity=0.076  Sum_probs=77.0

Q ss_pred             hhHHHHHHHHh---hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHH
Q 043295           24 FTAYVGFYEIS---QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKR   98 (223)
Q Consensus        24 ~ta~~~l~~~~---~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~   98 (223)
                      .+.+.++.+..   -.|++++|.  |-+|...++.++.+|++|+++...+.+.-.+. --|. .+.      .+.+.+. 
T Consensus         8 ~S~~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~-~dG~-~v~------~~~~a~~-   78 (163)
T d1li4a1           8 ESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAA-MEGY-EVT------TMDEACQ-   78 (163)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTC-EEC------CHHHHTT-
T ss_pred             hhHHHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhh-cCce-Eee------ehhhhhh-
Confidence            34555565554   689999999  99999999999999999999998886643333 2343 221      2333322 


Q ss_pred             hCCCCccEEEcCCChH--HHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhh
Q 043295           99 YFPDGIDVYFDNVGGE--MLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYK  155 (223)
Q Consensus        99 ~~~~~~d~vid~~g~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  155 (223)
                          ..|+++-++|..  .-...++.|+++..+.-+|...        ..++...+...
T Consensus        79 ----~adivvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghfd--------~EId~~~L~~~  125 (163)
T d1li4a1          79 ----EGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFD--------VEIDVKWLNEN  125 (163)
T ss_dssp             ----TCSEEEECSSCSCSBCHHHHTTCCTTEEEEECSSST--------TSBCHHHHHHH
T ss_pred             ----hccEEEecCCCccchhHHHHHhccCCeEEEEecccc--------ceecHHHHhhc
Confidence                278999999973  3456788999998888887433        25566555443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.31  E-value=0.0003  Score=51.08  Aligned_cols=78  Identities=21%  Similarity=0.298  Sum_probs=54.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCC---eeeecCCccc---HHHHHHHhCCCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFD---DAFNYKEETD---LKATLKRYFPDG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~---~~~~i~~~~~~~  103 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++++.+.+++   +..   ...|-.+.++   +.+.+.+..++.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   86 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   86 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence            58899999   89999999999999999999999998877665443   221   1234443312   233333334456


Q ss_pred             ccEEEcCCCh
Q 043295          104 IDVYFDNVGG  113 (223)
Q Consensus       104 ~d~vid~~g~  113 (223)
                      +|+++++.|.
T Consensus        87 idilvnnAG~   96 (259)
T d1xq1a_          87 LDILINNLGA   96 (259)
T ss_dssp             CSEEEEECCC
T ss_pred             cccccccccc
Confidence            9999998873

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00025  Score=51.44  Aligned_cols=77  Identities=23%  Similarity=0.397  Sum_probs=53.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CC-Cee----eecCCcccH---HHHHHHhCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GF-DDA----FNYKEETDL---KATLKRYFP  101 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~-~~~----~~~~~~~~~---~~~i~~~~~  101 (223)
                      +++++||+   +++|.+.++.+...|++|+.+++++++++.+.+++   +. ..+    .|-.++++.   .+.+.+.. 
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~-   87 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH-   87 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc-
Confidence            57899999   89999999999999999999999998877654333   32 122    233443233   33333333 


Q ss_pred             CCccEEEcCCCh
Q 043295          102 DGIDVYFDNVGG  113 (223)
Q Consensus       102 ~~~d~vid~~g~  113 (223)
                      +++|+++++.|.
T Consensus        88 g~iD~lVnnAg~   99 (257)
T d1xg5a_          88 SGVDICINNAGL   99 (257)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEecccc
Confidence            369999998864

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.29  E-value=0.00094  Score=48.53  Aligned_cols=100  Identities=17%  Similarity=0.239  Sum_probs=70.2

Q ss_pred             HHHHHh-hCCCEEEEE-CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCC
Q 043295           29 GFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFP  101 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~  101 (223)
                      .+.... +||++||=. .|.|..+..+|+..|  .+|++++.+++..+.+++   .+|....+..... +.    .....
T Consensus        95 Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~-d~----~~~~~  169 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR-DI----SEGFD  169 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC-CG----GGCCS
T ss_pred             HHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEec-cc----ccccc
Confidence            344455 999999999 888999999999875  599999999998877764   3454222221111 21    11223


Q ss_pred             C-CccEEEcCCCh--HHHHHHHHhhccCcEEEEEc
Q 043295          102 D-GIDVYFDNVGG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       102 ~-~~d~vid~~g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      . .+|.|+--...  ..++.+.+.|+|||+++.+.
T Consensus       170 ~~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         170 EKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             CCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             ccceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEe
Confidence            3 68877655553  47899999999999998764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.29  E-value=0.00031  Score=51.37  Aligned_cols=77  Identities=16%  Similarity=0.275  Sum_probs=52.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CC--Cee----eecCCcccHHHHHHHhCC--
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GF--DDA----FNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~--~~~----~~~~~~~~~~~~i~~~~~--  101 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++++.+.+++   +.  ..+    .|-.+.++..+.+.+...  
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            57889999   89999999999999999999999998887665443   22  112    243443233333333322  


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|+++++.|
T Consensus        84 g~iDilvnnAG   94 (272)
T d1xkqa_          84 GKIDVLVNNAG   94 (272)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCceEEEeCCc
Confidence            36999999876

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00045  Score=49.55  Aligned_cols=100  Identities=16%  Similarity=0.175  Sum_probs=67.7

Q ss_pred             HHHHHh--hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCC
Q 043295           29 GFYEIS--QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPD  102 (223)
Q Consensus        29 ~l~~~~--~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~  102 (223)
                      .+....  .||++||=. .|.|..+..+++..|++|++++.++...+.+++   ..|...-+..... +.    .+...+
T Consensus        24 ~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~-d~----~~~~~~   98 (245)
T d1nkva_          24 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN-DA----AGYVAN   98 (245)
T ss_dssp             HHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-CC----TTCCCS
T ss_pred             HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhh-HH----hhcccc
Confidence            344444  899999888 889999999999899999999999988877663   2354321111111 11    112223


Q ss_pred             -CccEEEcC-----CC--hHHHHHHHHhhccCcEEEEEc
Q 043295          103 -GIDVYFDN-----VG--GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       103 -~~d~vid~-----~g--~~~~~~~~~~l~~~G~~v~~g  133 (223)
                       .||+|+-.     ..  ...+....+.|+|||+++...
T Consensus        99 ~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_          99 EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence             79988642     22  136778888999999998753

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=0.00053  Score=49.50  Aligned_cols=77  Identities=19%  Similarity=0.292  Sum_probs=52.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH----hhCCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE----KLGFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++.+.+.+    +.|....   .|-.+.++..+.+.+...  ++
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   83 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            57899999   799999999999999999999999887654432    4454322   344443233333333222  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        84 iDiLVnnAG   92 (251)
T d1vl8a_          84 LDTVVNAAG   92 (251)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999886

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.28  E-value=0.0016  Score=44.52  Aligned_cols=94  Identities=15%  Similarity=0.070  Sum_probs=62.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee---------ecC-------CcccHHHHHH
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF---------NYK-------EETDLKATLK   97 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~---------~~~-------~~~~~~~~i~   97 (223)
                      +||.+||.. .|.|..+..+|+. |++|++++.|++-++.+++..+.....         +..       +..++.... 
T Consensus        19 ~~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-   96 (201)
T d1pjza_          19 VPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD-   96 (201)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH-
T ss_pred             CCCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc-
Confidence            899999999 8999999999974 999999999999999998544321110         000       000110000 


Q ss_pred             HhCCCCccEEEcCCC-----h----HHHHHHHHhhccCcEEEEEc
Q 043295           98 RYFPDGIDVYFDNVG-----G----EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus        98 ~~~~~~~d~vid~~g-----~----~~~~~~~~~l~~~G~~v~~g  133 (223)
                         ...+|.|++...     .    ..+....++|+++|+++...
T Consensus        97 ---~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          97 ---IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             ---HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ---ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence               014888877433     1    24677888999999987654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.24  E-value=0.0031  Score=45.36  Aligned_cols=94  Identities=19%  Similarity=0.145  Sum_probs=64.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      ++|++||=. .|.|..++.+++ .|++|++++.++.-.+.+++   ..|....+-..   +..+.   ...+.||+|+..
T Consensus       119 ~~g~~VLDiGcGsG~l~i~aa~-~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~---d~~~~---~~~~~fD~V~an  191 (254)
T d2nxca1         119 RPGDKVLDLGTGSGVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEG---SLEAA---LPFGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEES---CHHHH---GGGCCEEEEEEE
T ss_pred             CccCEEEEcccchhHHHHHHHh-cCCEEEEEECChHHHHHHHHHHHHcCCceeEEec---ccccc---ccccccchhhhc
Confidence            899999888 778988876554 68999999999988777763   23443222111   22222   122379999876


Q ss_pred             CChH----HHHHHHHhhccCcEEEEEccc
Q 043295          111 VGGE----MLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       111 ~g~~----~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      ....    .+....++|+|||+++..|..
T Consensus       192 i~~~~l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         192 LYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccHHHHHHHHHHhcCCCcEEEEEecc
Confidence            6543    355677899999999987654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00026  Score=51.30  Aligned_cols=77  Identities=18%  Similarity=0.247  Sum_probs=52.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCee---eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDA---FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++.+.+.++   .|....   .|-.+.++..+.+.+...  +++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~i   89 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            68899999   8999999999999999999999998887665433   343222   233333122222222222  369


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        90 DilvnnAG   97 (255)
T d1fmca_          90 DILVNNAG   97 (255)
T ss_dssp             CEEEECCC
T ss_pred             CEeeeCCc
Confidence            99999876

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00038  Score=50.06  Aligned_cols=78  Identities=17%  Similarity=0.164  Sum_probs=53.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCC---eeeecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFD---DAFNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      .|+.++|+   +++|...+.-....|++|+.+++++++++.+.++   .|..   ...|..+.++....++....  +++
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~i   85 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV   85 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            58899999   7899999888888999999999999988766533   3332   12344443222333333222  369


Q ss_pred             cEEEcCCCh
Q 043295          105 DVYFDNVGG  113 (223)
Q Consensus       105 d~vid~~g~  113 (223)
                      |+++++.|.
T Consensus        86 dilinnag~   94 (244)
T d1yb1a_          86 SILVNNAGV   94 (244)
T ss_dssp             SEEEECCCC
T ss_pred             ceeEeeccc
Confidence            999998873

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.21  E-value=0.00056  Score=49.57  Aligned_cols=77  Identities=16%  Similarity=0.218  Sum_probs=52.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CC-Cee----eecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GF-DDA----FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~-~~~----~~~~~~~~~~~~i~~~~~--~  102 (223)
                      +|++++|+   +++|.+.++.....|++|+.+++++++++.+.+++   +. ..+    .|-.+.++..+.+.+...  +
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            57889999   79999999999999999999999998876654332   21 122    244443233333333222  3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        83 ~iDiLVnnAG   92 (258)
T d1iy8a_          83 RIDGFFNNAG   92 (258)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCc
Confidence            6999998776

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.20  E-value=0.00073  Score=49.56  Aligned_cols=93  Identities=12%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEE--
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYF--  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi--  108 (223)
                      ++|++||=. .|.|..+..+++..|++|+++..|++..+.+++.   .|....+..... ++.    . .++.+|.|+  
T Consensus        51 ~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~-d~~----~-~~~~fD~i~si  124 (280)
T d2fk8a1          51 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ-GWE----D-FAEPVDRIVSI  124 (280)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-CGG----G-CCCCCSEEEEE
T ss_pred             CCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhh-hhh----h-hccchhhhhHh
Confidence            899999999 8889999999999999999999999988877632   343222111111 111    1 234688773  


Q ss_pred             ---cCCCh----HHHHHHHHhhccCcEEEEEc
Q 043295          109 ---DNVGG----EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       109 ---d~~g~----~~~~~~~~~l~~~G~~v~~g  133 (223)
                         +.++.    ..++...++|+|||+++.-.
T Consensus       125 ~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         125 EAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             SCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence               44443    24778889999999998643

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00044  Score=51.25  Aligned_cols=77  Identities=18%  Similarity=0.217  Sum_probs=52.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh--------CCCee---eecCCcccHHHHHHHhCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL--------GFDDA---FNYKEETDLKATLKRYFP  101 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~--------g~~~~---~~~~~~~~~~~~i~~~~~  101 (223)
                      +|+++||+   +++|.+.++.....|++|+.++++.++.+.+.+++        +....   .|-.+.++..+.+.+...
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   90 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   90 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHH
Confidence            68899999   89999999999999999999999988876654343        11111   233333233333333322


Q ss_pred             --CCccEEEcCCC
Q 043295          102 --DGIDVYFDNVG  112 (223)
Q Consensus       102 --~~~d~vid~~g  112 (223)
                        +++|+++++.|
T Consensus        91 ~~G~iDiLVnnAg  103 (297)
T d1yxma1          91 TFGKINFLVNNGG  103 (297)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HhCCeEEEEeecc
Confidence              36999999876

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.18  E-value=0.00061  Score=48.19  Aligned_cols=98  Identities=13%  Similarity=0.052  Sum_probs=64.5

Q ss_pred             HHHHHh-hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC-Cee-eecCCcccHHHHHHHhCCCCc
Q 043295           29 GFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF-DDA-FNYKEETDLKATLKRYFPDGI  104 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~-~~~-~~~~~~~~~~~~i~~~~~~~~  104 (223)
                      .+.... ++|++||-. +|.|..++.+++. +.+|+++..+++-.+.+++.+.. ..+ +-..+   ......  ..+.|
T Consensus        62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d---~~~g~~--~~~pf  135 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYNNIKLILGD---GTLGYE--EEKPY  135 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESC---GGGCCG--GGCCE
T ss_pred             HHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcccccccccCc---hhhcch--hhhhH
Confidence            454445 999999999 8899888888875 67999999999888888743332 111 11111   100000  01269


Q ss_pred             cEEEcCCCh-HHHHHHHHhhccCcEEEEE
Q 043295          105 DVYFDNVGG-EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       105 d~vid~~g~-~~~~~~~~~l~~~G~~v~~  132 (223)
                      |.|+-+.+- ......++.|++||++|..
T Consensus       136 D~Iiv~~a~~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         136 DRVVVWATAPTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             EEEEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             HHHHhhcchhhhhHHHHHhcCCCCEEEEE
Confidence            988755443 3445677899999999875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.14  E-value=0.00044  Score=50.29  Aligned_cols=77  Identities=12%  Similarity=0.243  Sum_probs=52.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CC--Cee----eecCCcccHHHHHHHhCC--
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GF--DDA----FNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~--~~~----~~~~~~~~~~~~i~~~~~--  101 (223)
                      +|+.+||+   +++|.+.++.....|++|+.+++++++++.+.+++   |.  ..+    .|-.+.++..+.+.+...  
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            57888999   89999999999999999999999998877665433   22  112    244443223333333222  


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|+++++.|
T Consensus        84 g~iDilvnnAG   94 (264)
T d1spxa_          84 GKLDILVNNAG   94 (264)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEeecccc
Confidence            36999999877

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.14  E-value=0.00042  Score=50.72  Aligned_cols=77  Identities=16%  Similarity=0.317  Sum_probs=52.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CC--Cee----eecCCcccHHHHHHHhCC--
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GF--DDA----FNYKEETDLKATLKRYFP--  101 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~--~~~----~~~~~~~~~~~~i~~~~~--  101 (223)
                      +|++++|+   +++|.+.++.....|++|+.+++++++++.+.+++   |.  ..+    .|-.+.++..+.+.+...  
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            57899999   89999999999999999999999998877665333   32  122    344443233333333322  


Q ss_pred             CCccEEEcCCC
Q 043295          102 DGIDVYFDNVG  112 (223)
Q Consensus       102 ~~~d~vid~~g  112 (223)
                      +++|+++++.|
T Consensus        83 G~iDilVnnAG   93 (274)
T d1xhla_          83 GKIDILVNNAG   93 (274)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCceEEEeecc
Confidence            36999998876

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.0015  Score=46.39  Aligned_cols=90  Identities=16%  Similarity=0.147  Sum_probs=65.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-  112 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-  112 (223)
                      .++.+||=. .|.|..+..+++ .|++|++++.++..++.++ +.+....+..+.. ++     ....+.+|+|+.... 
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~giD~s~~~l~~a~-~~~~~~~~~~~~~-~l-----~~~~~~fD~ii~~~~~  112 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQE-RGFEVVLVDPSKEMLEVAR-EKGVKNVVEAKAE-DL-----PFPSGAFEAVLALGDV  112 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHT-TTCEEEEEESCHHHHHHHH-HHTCSCEEECCTT-SC-----CSCTTCEEEEEECSSH
T ss_pred             CCCCEEEEECCCCchhcccccc-cceEEEEeecccccccccc-ccccccccccccc-cc-----ccccccccceeeecch
Confidence            677888877 789999999986 4899999999999999999 6666555443322 21     112237998875432 


Q ss_pred             -----h--HHHHHHHHhhccCcEEEEE
Q 043295          113 -----G--EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       113 -----~--~~~~~~~~~l~~~G~~v~~  132 (223)
                           .  ..+....++|++||.++..
T Consensus       113 ~~~~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         113 LSYVENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             HHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence                 1  2467888999999988764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.07  E-value=0.00065  Score=49.17  Aligned_cols=76  Identities=17%  Similarity=0.243  Sum_probs=51.4

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCee---eecCCcccHHHHHHHhCC--CCcc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDA---FNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      |+.+||+   +++|.+.++.....|++|+.+++++++++.+.++   .|....   .|-.+.++..+.+.+...  +++|
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD   81 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            6777888   7999999999999999999999998887665533   343222   233333233333333222  3699


Q ss_pred             EEEcCCC
Q 043295          106 VYFDNVG  112 (223)
Q Consensus       106 ~vid~~g  112 (223)
                      +++++.|
T Consensus        82 ilVnnAG   88 (257)
T d2rhca1          82 VLVNNAG   88 (257)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            9999876

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.05  E-value=0.0038  Score=42.58  Aligned_cols=98  Identities=16%  Similarity=0.145  Sum_probs=66.3

Q ss_pred             HHHHh-hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCC-eeeecCCcccHHHHHHHhCC-C
Q 043295           30 FYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFD-DAFNYKEETDLKATLKRYFP-D  102 (223)
Q Consensus        30 l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~-~~~~~~~~~~~~~~i~~~~~-~  102 (223)
                      +.... +++++||=. .|.|..++.+|+. +.+|++++.+++..+.+++   .+|.. .+ ..... +..+..   .+ +
T Consensus        26 l~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v-~~~~g-da~~~~---~~~~   99 (186)
T d1l3ia_          26 MCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNV-TLMEG-DAPEAL---CKIP   99 (186)
T ss_dssp             HHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTE-EEEES-CHHHHH---TTSC
T ss_pred             HHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcce-EEEEC-chhhcc---cccC
Confidence            33444 899998888 8889888888775 5699999999998777763   35552 33 11112 333222   22 2


Q ss_pred             CccEEEcCCCh----HHHHHHHHhhccCcEEEEEc
Q 043295          103 GIDVYFDNVGG----EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       103 ~~d~vid~~g~----~~~~~~~~~l~~~G~~v~~g  133 (223)
                      .+|.|+-..+.    +.+..+.+.|+++|+++...
T Consensus       100 ~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_         100 DIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             CEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEe
Confidence            69988754432    35778888999999988654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.03  E-value=0.00067  Score=48.92  Aligned_cols=77  Identities=10%  Similarity=0.308  Sum_probs=51.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCee---eecCCcccHHHHHHHhCC--CCc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDA---FNYKEETDLKATLKRYFP--DGI  104 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~~--~~~  104 (223)
                      +++.+||+   +++|.+.++.....|++|+.+++++++.+.+.++   .|....   .|-.+.++..+.+.+...  +++
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i   88 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV   88 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCc
Confidence            57788999   7999999988888999999999999887665533   343221   343443223333332221  379


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        89 Dilvnnag   96 (251)
T d2c07a1          89 DILVNNAG   96 (251)
T ss_dssp             CEEEECCC
T ss_pred             eeeeeccc
Confidence            99998776

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.01  E-value=0.00063  Score=49.35  Aligned_cols=76  Identities=12%  Similarity=0.160  Sum_probs=51.6

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH----hhCCCee---eecCCcccHH---HHHHHhCCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE----KLGFDDA---FNYKEETDLK---ATLKRYFPD  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~---~~i~~~~~~  102 (223)
                      +|+++||+   +++|.+.++.....|++|+.++++.++.+.+.+    +.|....   .|-.+.++..   +.+.+.. +
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g   86 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL-G   86 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS-C
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHh-C
Confidence            57899999   789999999999999999999998876544332    3454322   3444432232   3333332 3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        87 ~iDilVnnAg   96 (260)
T d1h5qa_          87 PISGLIANAG   96 (260)
T ss_dssp             SEEEEEECCC
T ss_pred             CCcEeccccc
Confidence            7999999876

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.01  E-value=0.00075  Score=49.79  Aligned_cols=77  Identities=13%  Similarity=0.193  Sum_probs=51.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh----hCCCe-e--eecCCcccHHHHHHHhC--CCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK----LGFDD-A--FNYKEETDLKATLKRYF--PDG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~~~~i~~~~--~~~  103 (223)
                      +|+++||+   +++|.+.++.....|++|+.++++.++.+.+.++    .|... .  .|-.+.+.....+....  .++
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  103 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  103 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhccc
Confidence            46899999   8999999999999999999999998876544423    34322 2  23333312222222222  237


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus       104 iDilvnnAg  112 (294)
T d1w6ua_         104 PNIVINNAA  112 (294)
T ss_dssp             CSEEEECCC
T ss_pred             cchhhhhhh
Confidence            999999886

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.98  E-value=0.021  Score=40.15  Aligned_cols=97  Identities=12%  Similarity=0.054  Sum_probs=69.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHh-----CCCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRY-----FPDG  103 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~-----~~~~  103 (223)
                      ...++||-. +..|..++.+|+.+  +.+|+.+..+++..+.+++   +.|...-+..... +..+.+.+.     ..+.
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g-~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG-PALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHCGGGTTC
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeeh-HHHHHHHHHHhccccCCc
Confidence            778899999 89999999999987  4699999999987776663   3466443333333 444455443     2337


Q ss_pred             ccEEE-cCCCh---HHHHHHHHhhccCcEEEEE
Q 043295          104 IDVYF-DNVGG---EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       104 ~d~vi-d~~g~---~~~~~~~~~l~~~G~~v~~  132 (223)
                      ||+|| |+--.   ..++.++++|++||.++.=
T Consensus       137 fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         137 YDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             BSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             eeEEEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence            99886 54443   4688999999999998763

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.004  Score=41.84  Aligned_cols=100  Identities=10%  Similarity=-0.000  Sum_probs=62.8

Q ss_pred             HHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCC
Q 043295           28 VGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDG  103 (223)
Q Consensus        28 ~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~  103 (223)
                      ++|.+..  .++++|+|.  |+.+.+++.-+...|++|+.+.|+.++.+.+.+.+.....+..-.. +      +.....
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~-~------~~~~~~   79 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSM-D------ELEGHE   79 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCS-G------GGTTCC
T ss_pred             HHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccccc-c------cccccc
Confidence            3455555  788999999  9999999988888999999999999887777644432111111110 0      011125


Q ss_pred             ccEEEcCCChHH----HHHHHHhhccCcEEEEEcc
Q 043295          104 IDVYFDNVGGEM----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       104 ~d~vid~~g~~~----~~~~~~~l~~~G~~v~~g~  134 (223)
                      +|++++|+....    .......+.++..++.+-.
T Consensus        80 ~dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY  114 (170)
T d1nyta1          80 FDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFY  114 (170)
T ss_dssp             CSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCC
T ss_pred             cceeecccccCcccCCCCCcHHHhccCcEEEEeec
Confidence            899999985211    1112335666666666543

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.94  E-value=0.0011  Score=47.62  Aligned_cols=76  Identities=16%  Similarity=0.156  Sum_probs=52.0

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHhhCCC-ee--eecCCcc---cHHHHHHHhCCC-Cc
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEKLGFD-DA--FNYKEET---DLKATLKRYFPD-GI  104 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~~g~~-~~--~~~~~~~---~~~~~i~~~~~~-~~  104 (223)
                      .++|||+   +++|.+.++.....|+  +|+.++++.++.+.+++..+.. .+  .|-.+.+   .+.+.+.+..+. ++
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i   82 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL   82 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence            4789999   8999998887777786  7999999999888887333322 11  2443331   234444444444 69


Q ss_pred             cEEEcCCC
Q 043295          105 DVYFDNVG  112 (223)
Q Consensus       105 d~vid~~g  112 (223)
                      |+++++.|
T Consensus        83 dilinnAG   90 (250)
T d1yo6a1          83 SLLINNAG   90 (250)
T ss_dssp             CEEEECCC
T ss_pred             EEEEEcCc
Confidence            99999887

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.87  E-value=0.0013  Score=47.60  Aligned_cols=77  Identities=19%  Similarity=0.240  Sum_probs=49.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH-HHHHHHH---hhCCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE-KVAILKE---KLGFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~-~~~~~~~---~~g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      +|++++|+   +++|.+.++.....|++|+.++++.+ +.+.+.+   +.|....   .|-.+.++..+.+.+...  ++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   85 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            57899999   89999999988899999999998753 3333321   4454322   244443223222333222  36


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        86 iDiLVnnAG   94 (261)
T d1geea_          86 LDVMINNAG   94 (261)
T ss_dssp             CCEEEECCC
T ss_pred             CCEeeccce
Confidence            999999876

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0014  Score=49.00  Aligned_cols=102  Identities=16%  Similarity=0.117  Sum_probs=65.4

Q ss_pred             HHHHHh-hCCCEEEEE-CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHhhC--------------CCee-eecCCc
Q 043295           29 GFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEKLG--------------FDDA-FNYKEE   89 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~~g--------------~~~~-~~~~~~   89 (223)
                      .+.... +||++||=. .|.|.++..+|+..|.  +|++...+++..+.+++.+.              .+.+ +...  
T Consensus        90 Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~--  167 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK--  167 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES--
T ss_pred             HHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEec--
Confidence            344455 999999888 8889999999999875  89999999988877764221              0111 1111  


Q ss_pred             ccHHHHHHHhCCCCccEEE-cCCCh-HHHHHHHHhhccCcEEEEEc
Q 043295           90 TDLKATLKRYFPDGIDVYF-DNVGG-EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vi-d~~g~-~~~~~~~~~l~~~G~~v~~g  133 (223)
                       ++.+.......+.+|.|| |.... ..+..+.+.|+|||+++.+.
T Consensus       168 -di~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         168 -DISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             -CTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             -chhhcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEe
Confidence             111110111122588765 44332 47888999999999999874

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.82  E-value=0.0048  Score=43.75  Aligned_cols=69  Identities=20%  Similarity=0.245  Sum_probs=49.0

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++++    +.+...+ .|-.+  . .+.+.+.. +.+|+++++.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~----~~~~~~~~~Dv~~--~-~~~~~~~~-g~iD~lVnnA   74 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK----RSGHRYVVCDLRK--D-LDLLFEKV-KEVDILVLNA   74 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HTCSEEEECCTTT--C-HHHHHHHS-CCCSEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH----hcCCcEEEcchHH--H-HHHHHHHh-CCCcEEEecc
Confidence            57899999   89999999999999999999999876544    4454332 23222  2 33444433 3599999887


Q ss_pred             C
Q 043295          112 G  112 (223)
Q Consensus       112 g  112 (223)
                      |
T Consensus        75 G   75 (234)
T d1o5ia_          75 G   75 (234)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.80  E-value=0.00083  Score=48.68  Aligned_cols=100  Identities=15%  Similarity=0.061  Sum_probs=68.2

Q ss_pred             HHHHh-hCCCEEEEE-CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHhh---C---CCeeeecCCcccHHHHHHHh
Q 043295           30 FYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEKL---G---FDDAFNYKEETDLKATLKRY   99 (223)
Q Consensus        30 l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~~---g---~~~~~~~~~~~~~~~~i~~~   99 (223)
                      +.... +||++||=. .|.|.++..+|+..|-  +|++++.+++..+.+++.+   +   .+.+-....  +..+  ..+
T Consensus        89 i~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~--d~~~--~~~  164 (264)
T d1i9ga_          89 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS--DLAD--SEL  164 (264)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS--CGGG--CCC
T ss_pred             HHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec--cccc--ccc
Confidence            33444 999999988 8999999999999864  9999999999888887422   1   122211111  1111  011


Q ss_pred             CCCCccEEEcCCCh--HHHHHHHHhhccCcEEEEEc
Q 043295          100 FPDGIDVYFDNVGG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       100 ~~~~~d~vid~~g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ..+.+|.||--...  ..+..+.+.|++||+++.+.
T Consensus       165 ~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         165 PDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             CTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEe
Confidence            12379977544443  57889999999999998764

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.79  E-value=0.0023  Score=45.84  Aligned_cols=77  Identities=16%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH-H-HHHHHhhCCCee---eecCCcccHHHHHHHhCC--CCcc
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK-V-AILKEKLGFDDA---FNYKEETDLKATLKRYFP--DGID  105 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~-~-~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d  105 (223)
                      +|+.+||+   +++|.+.++.....|++|+.+++++.+ . +.++ ++|....   .|-.+.++....+.+...  +++|
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~-~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iD   82 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIR-NLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   82 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH-HTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHH-HcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            57889999   799999999999999999999977543 2 3334 6665322   343443223333333222  3699


Q ss_pred             EEEcCCCh
Q 043295          106 VYFDNVGG  113 (223)
Q Consensus       106 ~vid~~g~  113 (223)
                      +++++.|.
T Consensus        83 ilVnnAG~   90 (247)
T d2ew8a1          83 ILVNNAGI   90 (247)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998873

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.77  E-value=0.0085  Score=40.37  Aligned_cols=88  Identities=17%  Similarity=0.105  Sum_probs=59.1

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee-------ecCC--cccHHHHHHHhCCCCccE
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF-------NYKE--ETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~-------~~~~--~~~~~~~i~~~~~~~~d~  106 (223)
                      +++.|.  |.+|.+.+..+...|.+|+..++++++.+.++ +.+.....       ....  .++..+.++     ..|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~aD~   75 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ-DRGAIIAEGPGLAGTAHPDLLTSDIGLAVK-----DADV   75 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HHTSEEEESSSCCEEECCSEEESCHHHHHT-----TCSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCCchhhhhhhhhhhhhhhhhhhHhHhc-----CCCE
Confidence            678888  99999999999999999999999999999888 55531110       0000  013344343     3899


Q ss_pred             EEcCCChHHHH----HHHHhhccCcEEEE
Q 043295          107 YFDNVGGEMLE----AAVANMNLFGRVAA  131 (223)
Q Consensus       107 vid~~g~~~~~----~~~~~l~~~G~~v~  131 (223)
                      +|-|+......    .....+.++-.++.
T Consensus        76 iii~v~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          76 ILIVVPAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             EEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             EEEEEchhHHHHHHHHhhhccCCCCEEEE
Confidence            99999864333    34445555555543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.75  E-value=0.0015  Score=47.07  Aligned_cols=74  Identities=15%  Similarity=0.195  Sum_probs=49.0

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCee---eecCCcccHHHHHHHhCC--CCccEE
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDA---FNYKEETDLKATLKRYFP--DGIDVY  107 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~~--~~~d~v  107 (223)
                      .+||+   +++|.+.++.....|++|+.+++++++.+.+.++   .|....   .|-.+.++..+.+.+...  +++|++
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   82 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVI   82 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEE
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence            45788   7899999988888999999999999887766533   343221   344443222222333222  369999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      +++.|
T Consensus        83 VnnAG   87 (255)
T d1gega_          83 VNNAG   87 (255)
T ss_dssp             EECCC
T ss_pred             Eeccc
Confidence            98876

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.74  E-value=0.0077  Score=39.77  Aligned_cols=96  Identities=17%  Similarity=0.117  Sum_probs=69.6

Q ss_pred             HHHHHHHh---hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCC
Q 043295           27 YVGFYEIS---QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFP  101 (223)
Q Consensus        27 ~~~l~~~~---~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~  101 (223)
                      +.++.+..   -.|++++|.  |-+|.-.++-+|.+|++|+++...|-+.-.+. --|. .+.      +..+.++    
T Consensus        10 ~d~i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~-mdGf-~v~------~~~~a~~----   77 (163)
T d1v8ba1          10 PDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-MEGF-NVV------TLDEIVD----   77 (163)
T ss_dssp             HHHHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-TTTC-EEC------CHHHHTT----
T ss_pred             HHHHHHHhCceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHH-hcCC-ccC------chhHccc----
Confidence            34444443   689999999  99999999999999999999998886643333 2233 221      3333332    


Q ss_pred             CCccEEEcCCChH--HHHHHHHhhccCcEEEEEccc
Q 043295          102 DGIDVYFDNVGGE--MLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       102 ~~~d~vid~~g~~--~~~~~~~~l~~~G~~v~~g~~  135 (223)
                       ..|+++-++|..  .-..-++.|+++..+.-.|-.
T Consensus        78 -~aDi~vTaTGn~~vI~~~h~~~MKdgaIl~N~GHf  112 (163)
T d1v8ba1          78 -KGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHF  112 (163)
T ss_dssp             -TCSEEEECCSSSSSBCHHHHTTCCTTCEEEECSST
T ss_pred             -cCcEEEEcCCCCccccHHHHHHhhCCeEEEecccc
Confidence             389999999974  245678899999999888753

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0024  Score=45.03  Aligned_cols=92  Identities=17%  Similarity=0.209  Sum_probs=62.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHhh---CC-----Cee-eecCCcccHHHHHHHhCC-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEKL---GF-----DDA-FNYKEETDLKATLKRYFP-  101 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~~---g~-----~~~-~~~~~~~~~~~~i~~~~~-  101 (223)
                      ++|++||-. ++.|..++.+|+..|.  +|+++..+++-.+.+++.+   +.     ..+ +-..+   ..   .-... 
T Consensus        75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD---~~---~~~~~~  148 (224)
T d1i1na_          75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD---GR---MGYAEE  148 (224)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC---GG---GCCGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEee---cc---cccchh
Confidence            899999999 8999999999998763  9999999988776665322   22     111 11111   00   00111 


Q ss_pred             CCccEEEcCCCh-HHHHHHHHhhccCcEEEEE
Q 043295          102 DGIDVYFDNVGG-EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       102 ~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~  132 (223)
                      +.||.|+-+..- ......++.|++||++|..
T Consensus       149 ~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         149 APYDAIHVGAAAPVVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             CCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             hhhhhhhhhcchhhcCHHHHhhcCCCcEEEEE
Confidence            269999876654 3456788999999999874

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.70  E-value=0.019  Score=38.26  Aligned_cols=94  Identities=12%  Similarity=-0.024  Sum_probs=60.5

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh-
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG-  113 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~-  113 (223)
                      +++|+|.  |.+|..+++.+...|.+|+++.++.++.+.+.+.++...+...... .....-....  ..|.++.+... 
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~-~~~~~~~~i~--~~~~~i~~~~~~   78 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVN-DDAALDAEVA--KHDLVISLIPYT   78 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTT-CHHHHHHHHT--TSSEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhccccccccccccc-chhhhHhhhh--ccceeEeeccch
Confidence            6789999  9999999998888899999999999998888744544322211111 1111111111  36777777765 


Q ss_pred             HHHHHHHHhhccCcEEEEEc
Q 043295          114 EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       114 ~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ........+...+..++...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          79 FHATVIKSAIRQKKHVVTTS   98 (182)
T ss_dssp             GHHHHHHHHHHHTCEEECSS
T ss_pred             hhhHHHHHHHhhccceeecc
Confidence            34444555666666666554

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.69  E-value=0.0022  Score=46.32  Aligned_cols=101  Identities=18%  Similarity=0.266  Sum_probs=62.4

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC-HHHHHHHHH---hhCCCee---eecCCcccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT-NEKVAILKE---KLGFDDA---FNYKEETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~-~~~~~~~~~---~~g~~~~---~~~~~~~~~~~~i~~~~~--~~  103 (223)
                      .|+++||+   +++|.+.++.....|++|+.++++ ++..+.+.+   +.|....   .|-.+.++..+.+.+...  ++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG   84 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcCC
Confidence            48899999   899999999999999999987644 444444332   4555322   233333233333333222  26


Q ss_pred             ccEEEcCCChH-----------H---------------HHHHHHhhccCcEEEEEcccc
Q 043295          104 IDVYFDNVGGE-----------M---------------LEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       104 ~d~vid~~g~~-----------~---------------~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      +|+++++.|..           .               .+.++..|+.+|.++.+....
T Consensus        85 idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~  143 (259)
T d1ja9a_          85 LDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIA  143 (259)
T ss_dssp             EEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccc
Confidence            99999988731           1               123456677778777776543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.69  E-value=0.0035  Score=45.73  Aligned_cols=98  Identities=12%  Similarity=0.089  Sum_probs=65.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      .++.+||=. +|.|..+..+++..|++|++++.++...+.+++   ..|...-+..... ++.+ + ....+.||+|+-.
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~-d~~~-l-~~~~~sfD~V~~~  142 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG-SFLE-I-PCEDNSYDFIWSQ  142 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEEC-CTTS-C-SSCTTCEEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccc-cccc-c-cccccccchhhcc
Confidence            789999988 889999999999889999999999988777663   2344211111111 1110 1 1112369988642


Q ss_pred             C-----Ch--HHHHHHHHhhccCcEEEEEccc
Q 043295          111 V-----GG--EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       111 ~-----g~--~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      -     ..  ..+..+.++|+|||+++.....
T Consensus       143 ~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1         143 DAFLHSPDKLKVFQECARVLKPRGVMAITDPM  174 (282)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhhccCHHHHHHHHHHhcCCCcEEEEEEee
Confidence            2     22  3578889999999999886543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.68  E-value=0.0023  Score=46.22  Aligned_cols=103  Identities=17%  Similarity=0.243  Sum_probs=63.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH-HHHHHHHH----hhCCCee---eecCCcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN-EKVAILKE----KLGFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~-~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      +|+.+||+   +++|.+.++.....|++|+.+++++ ++.+.+.+    ..|....   .|-.+.++..+.+.+...  +
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   82 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            57889999   7899999999999999999999864 44444332    3344322   244443223333332222  3


Q ss_pred             CccEEEcCCChH-----------HHH---------------HHHHhhc--cCcEEEEEcccccc
Q 043295          103 GIDVYFDNVGGE-----------MLE---------------AAVANMN--LFGRVAACGVISEC  138 (223)
Q Consensus       103 ~~d~vid~~g~~-----------~~~---------------~~~~~l~--~~G~~v~~g~~~~~  138 (223)
                      ++|+++++.|..           .++               .++..|.  .+|++|.++...+.
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~  146 (260)
T d1x1ta1          83 RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGL  146 (260)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             CCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccce
Confidence            699999887621           111               2344543  35899998876654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.67  E-value=0.006  Score=45.50  Aligned_cols=100  Identities=17%  Similarity=0.207  Sum_probs=65.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhC--CCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYF--PDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~--~~~~d~v  107 (223)
                      ++|++||=. +++|..++..|+. |+ +|++++.+++..+.+++   ..|....+..... +..+.+....  ++.||+|
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~-d~~~~~~~~~~~~~~fD~V  221 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG-SAFEEMEKLQKKGEKFDIV  221 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-CHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeec-hhhhhhHHHHhccCCCCch
Confidence            789998877 8888888887765 66 89999999998887763   2455322222222 3444444332  2379988


Q ss_pred             E-cCCC---h------------HHHHHHHHhhccCcEEEEEcccc
Q 043295          108 F-DNVG---G------------EMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       108 i-d~~g---~------------~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      + |...   +            +.+..++++|+|||.++.+....
T Consensus       222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            6 3321   1            13556778999999999887543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.66  E-value=0.0099  Score=39.46  Aligned_cols=84  Identities=17%  Similarity=0.181  Sum_probs=56.9

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC-CeeeecCCcccHHHHHHHhCCCCccEEEcCCChHH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF-DDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEM  115 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~  115 (223)
                      +|.|.  |.+|...+...+..|.+|++.++++++.+.++ +.|. +...+..      +.+     ...|+||-|+....
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~-~~~~~~~~~~~~------~~~-----~~~DiIilavp~~~   69 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-ERQLVDEAGQDL------SLL-----QTAKIIFLCTPIQL   69 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTSCSEEESCG------GGG-----TTCSEEEECSCHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHH-Hhhccceeeeec------ccc-----cccccccccCcHhh
Confidence            57777  89998888888888999999999999999888 7775 3332211      111     13889988887543


Q ss_pred             ----HHHHHHhhccCcEEEEEcc
Q 043295          116 ----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       116 ----~~~~~~~l~~~G~~v~~g~  134 (223)
                          ++.....+.++..++.++.
T Consensus        70 ~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          70 ILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             HHHHHHHHGGGSCTTCEEEECCS
T ss_pred             hhhhhhhhhhhcccccceeeccc
Confidence                3334444555666666543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.57  E-value=0.018  Score=36.60  Aligned_cols=73  Identities=15%  Similarity=0.092  Sum_probs=52.5

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGE  114 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~  114 (223)
                      +|+|.  |.+|...++.....|..|++++.++++.+.+.++++.. ++..+.  ...+.+++..-...|.++-++..+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~-vi~Gd~--~~~~~l~~~~i~~a~~vv~~t~~d   76 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL-VINGDC--TKIKTLEDAGIEDADMYIAVTGKE   76 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE-EEESCT--TSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhh-hccCcc--cchhhhhhcChhhhhhhcccCCcH
Confidence            57888  99999999999999999999999999998887556654 332221  122333333223689999888875

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.56  E-value=0.00039  Score=49.70  Aligned_cols=97  Identities=16%  Similarity=0.213  Sum_probs=61.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCC--c---ccHHHHHHHhCCC-CccE
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE--E---TDLKATLKRYFPD-GIDV  106 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~---~~~~~~i~~~~~~-~~d~  106 (223)
                      +|++|||+   +++|.+.++.....|++|+.+++++.+..      ..........  .   +.....+.+..+. ++|+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~   74 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA   74 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc------cccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence            47899999   89999999999999999999887654311      1111111111  1   1233334444444 7999


Q ss_pred             EEcCCCh----H--------HHH---------------HHHHhhccCcEEEEEcccccc
Q 043295          107 YFDNVGG----E--------MLE---------------AAVANMNLFGRVAACGVISEC  138 (223)
Q Consensus       107 vid~~g~----~--------~~~---------------~~~~~l~~~G~~v~~g~~~~~  138 (223)
                      ++++.|.    .        .++               .++..++++|+++.++.....
T Consensus        75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~  133 (236)
T d1dhra_          75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL  133 (236)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG
T ss_pred             EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc
Confidence            9998762    1        111               234567888999999876553

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.55  E-value=0.0069  Score=41.79  Aligned_cols=67  Identities=25%  Similarity=0.318  Sum_probs=50.9

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -.|.+|.|.  |.||..+++++...|++|++.+.+..+..... .+|.+.+ +..   +       +.....|+.+-|..
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~-~~g~~~~-~~~---~-------~~~~~~DI~iPcA~   92 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAV-ALGHTAV-ALE---D-------VLSTPCDVFAPCAM   92 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEEC-CGG---G-------GGGCCCSEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHH-hhccccc-Ccc---c-------cccccceeeecccc
Confidence            367899999  99999999999999999999999888888887 7776433 221   1       11125788887665


Q ss_pred             h
Q 043295          113 G  113 (223)
Q Consensus       113 ~  113 (223)
                      +
T Consensus        93 ~   93 (201)
T d1c1da1          93 G   93 (201)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.49  E-value=0.0057  Score=45.12  Aligned_cols=102  Identities=24%  Similarity=0.226  Sum_probs=63.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecC---------HHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT---------NEKVAILKEK---LGFDDAFNYKEETDLKATLKRYF  100 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~---------~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~  100 (223)
                      +|+++||+   +++|.+.++.....|++|+.++++         .+..+.+.++   .+.....|..+.++..+.+.+..
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~   85 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   85 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHH
Confidence            57899999   899999999999999999998643         3333333222   23344455554323333333322


Q ss_pred             C--CCccEEEcCCChH-----------HH---------------HHHHHhhc--cCcEEEEEccccc
Q 043295          101 P--DGIDVYFDNVGGE-----------ML---------------EAAVANMN--LFGRVAACGVISE  137 (223)
Q Consensus       101 ~--~~~d~vid~~g~~-----------~~---------------~~~~~~l~--~~G~~v~~g~~~~  137 (223)
                      .  |++|+++++.|..           .+               +.++..|.  .+|++|.++...+
T Consensus        86 ~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~  152 (302)
T d1gz6a_          86 DTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASG  152 (302)
T ss_dssp             HHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHH
T ss_pred             HHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhh
Confidence            2  3799999988621           11               12345553  4589999987654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.49  E-value=0.008  Score=42.38  Aligned_cols=94  Identities=14%  Similarity=0.220  Sum_probs=63.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      +||++||=. .|.|..+..+++. +.+|++++.|+.-++.+++   ..+.+.+- .... +.. .+ .+.++.||+|+.+
T Consensus        15 ~~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~-~~~~-d~~-~~-~~~~~~fD~v~~~   89 (234)
T d1xxla_          15 RAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVR-FQQG-TAE-SL-PFPDDSFDIITCR   89 (234)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSEE-EEEC-BTT-BC-CSCTTCEEEEEEE
T ss_pred             CCCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhccccccccc-cccc-ccc-cc-cccccccceeeee
Confidence            999999888 8999999999875 6899999999987776653   23433221 1110 110 00 1122369988753


Q ss_pred             CC-----h--HHHHHHHHhhccCcEEEEEc
Q 043295          111 VG-----G--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       111 ~g-----~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      -.     .  ..+..+.+.|+|+|.++...
T Consensus        90 ~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          90 YAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence            22     1  35888899999999988754

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0088  Score=42.07  Aligned_cols=99  Identities=14%  Similarity=0.122  Sum_probs=65.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee------------eecCCc------ccHHHH
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA------------FNYKEE------TDLKAT   95 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~------~~~~~~   95 (223)
                      .++.+||.. .|.|..+..+|+ .|++|++++.|+.-++.++++.+....            ......      .++. .
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~-~  121 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFAD-RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF-D  121 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG-G
T ss_pred             CCCCEEEEeCCCCcHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh-h
Confidence            788899999 888999999987 599999999999998888744432111            000000      0110 0


Q ss_pred             HHHhCCCCccEEEcCCC-----h----HHHHHHHHhhccCcEEEEEccc
Q 043295           96 LKRYFPDGIDVYFDNVG-----G----EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus        96 i~~~~~~~~d~vid~~g-----~----~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      +.....+.+|+|+++..     .    ..+....++|+|||+++.....
T Consensus       122 l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         122 LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            11111236899988652     1    2567888999999998766543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.01  Score=40.17  Aligned_cols=102  Identities=12%  Similarity=0.111  Sum_probs=61.5

Q ss_pred             HHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHH---HhhC----C-CeeeecCCcccHHH
Q 043295           28 VGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILK---EKLG----F-DDAFNYKEETDLKA   94 (223)
Q Consensus        28 ~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~---~~~g----~-~~~~~~~~~~~~~~   94 (223)
                      +++....  -.+++|+|.  |+.|.+++..+...|+ +++.+.+++++.+.+.   +.++    . ..+.+..+..++.+
T Consensus         7 ~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (182)
T d1vi2a1           7 RAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE   86 (182)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred             HHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhh
Confidence            3444444  567899999  9999999888888898 7888888766544332   1222    1 12233333212333


Q ss_pred             HHHHhCCCCccEEEcCCChH-------HHHHHHHhhccCcEEEEEcc
Q 043295           95 TLKRYFPDGIDVYFDNVGGE-------MLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus        95 ~i~~~~~~~~d~vid~~g~~-------~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .+.     .+|++++|+.-.       .+..-+..++++..++.+-.
T Consensus        87 ~~~-----~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y  128 (182)
T d1vi2a1          87 ALA-----SADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVY  128 (182)
T ss_dssp             HHH-----TCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCC
T ss_pred             hhc-----ccceeccccCCccccccchhhhhHHHhhhcchhhHHhhc
Confidence            322     389999998621       11112346777888887754

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.003  Score=45.81  Aligned_cols=42  Identities=24%  Similarity=0.251  Sum_probs=37.0

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE   76 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~   76 (223)
                      -+|+++||+   +++|.+.++.....|++|+.+++++++++.+.+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            368999999   899999999988999999999999998877653

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.45  E-value=0.0038  Score=45.33  Aligned_cols=103  Identities=20%  Similarity=0.244  Sum_probs=64.3

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH-HHHHHHHH---hhCCCee---eecCCcccHHHHHHHhCC--C
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN-EKVAILKE---KLGFDDA---FNYKEETDLKATLKRYFP--D  102 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~-~~~~~~~~---~~g~~~~---~~~~~~~~~~~~i~~~~~--~  102 (223)
                      -+|+++||+   +++|.+.++.....|++|+.++++. +..+.+.+   +.|.+..   .|-.+.++..+.+.+...  +
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            357899999   8999999999999999999988663 44333321   4454332   233333233333333322  3


Q ss_pred             CccEEEcCCChH-----------H---------------HHHHHHhhccCcEEEEEccccc
Q 043295          103 GIDVYFDNVGGE-----------M---------------LEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       103 ~~d~vid~~g~~-----------~---------------~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      ++|+++.+.|..           .               .+.++..|...|+++.++....
T Consensus        96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~  156 (272)
T d1g0oa_          96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITG  156 (272)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGG
T ss_pred             CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccc
Confidence            689998877531           1               1234567777888888775543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0024  Score=46.49  Aligned_cols=99  Identities=21%  Similarity=0.292  Sum_probs=62.4

Q ss_pred             CCCEE-EEE---CchHHHHHH-HHHHcCCeEEEEecCHHHHHHHHHhh---CCC-ee--eecCCccc---HHHHHHHhCC
Q 043295           36 KGEKV-FVS---GAYGHLVGQ-YAKLGGCYVVGSAGTNEKVAILKEKL---GFD-DA--FNYKEETD---LKATLKRYFP  101 (223)
Q Consensus        36 ~g~~v-lI~---g~vG~~a~q-la~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~~--~~~~~~~~---~~~~i~~~~~  101 (223)
                      .|++| ||+   +++|.+.++ +++..|++|+.+++++++.+.+.+++   |.. ..  .|-.+.++   +.+.+.+.. 
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~-   79 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY-   79 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc-
Confidence            36777 555   799988775 56667999999999999877665444   332 11  24333312   333343332 


Q ss_pred             CCccEEEcCCChH-----------HH---------------HHHHHhhccCcEEEEEccc
Q 043295          102 DGIDVYFDNVGGE-----------ML---------------EAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       102 ~~~d~vid~~g~~-----------~~---------------~~~~~~l~~~G~~v~~g~~  135 (223)
                      +++|++++..|-.           .+               +.++..|++.|+++.++..
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~  139 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI  139 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence            3699999988721           11               1234566788999988754

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.27  E-value=0.0022  Score=46.15  Aligned_cols=103  Identities=15%  Similarity=0.109  Sum_probs=61.5

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHH---HhhCCCee----eecC-CcccHHHHHHHhCC--C
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK---EKLGFDDA----FNYK-EETDLKATLKRYFP--D  102 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~---~~~g~~~~----~~~~-~~~~~~~~i~~~~~--~  102 (223)
                      +|+++||+   +++|.+.+......|++|+.++++.++.+.+.   ...+-..+    .|-. +.++..+.+.+...  +
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g   83 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHcC
Confidence            58899999   78999999888889999999987766544333   12222222    2222 11122222222222  3


Q ss_pred             CccEEEcCCCh---HHHH---------------HHHHhhc-----cCcEEEEEcccccc
Q 043295          103 GIDVYFDNVGG---EMLE---------------AAVANMN-----LFGRVAACGVISEC  138 (223)
Q Consensus       103 ~~d~vid~~g~---~~~~---------------~~~~~l~-----~~G~~v~~g~~~~~  138 (223)
                      ++|+++++.|.   +.++               .++..|.     ++|+++.++...+.
T Consensus        84 ~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~  142 (254)
T d1sbya1          84 TVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGF  142 (254)
T ss_dssp             CCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhc
Confidence            69999999984   1122               2334442     35889888766553

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.23  E-value=0.0057  Score=44.11  Aligned_cols=95  Identities=18%  Similarity=0.113  Sum_probs=64.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCe-eeecCCcccHHHHHHHhCCC-CccEE-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDD-AFNYKEETDLKATLKRYFPD-GIDVY-  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~-~~~~~~~~~~~~~i~~~~~~-~~d~v-  107 (223)
                      ++|++||-. .++|..++.+|+.-+++|++++.++...+.+++   ..|.+. +--...  +.    ++..+. .+|.| 
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~--D~----~~~~~~~~~D~Ii  179 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM--DN----RDFPGENIADRIL  179 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS--CT----TTCCCCSCEEEEE
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEc--ch----HHhccCCCCCEEE
Confidence            889999988 889999999998755699999999998877763   234432 211111  11    123333 68855 


Q ss_pred             EcCCC-h-HHHHHHHHhhccCcEEEEEccc
Q 043295          108 FDNVG-G-EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       108 id~~g-~-~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      ++-.. + +.+..++..+++||.+......
T Consensus       180 ~~~p~~~~~~l~~a~~~l~~gG~lh~~~~~  209 (260)
T d2frna1         180 MGYVVRTHEFIPKALSIAKDGAIIHYHNTV  209 (260)
T ss_dssp             ECCCSSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             ECCCCchHHHHHHHHhhcCCCCEEEEEecc
Confidence            55433 3 5678899999999988665543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.22  E-value=0.0066  Score=44.42  Aligned_cols=95  Identities=12%  Similarity=0.009  Sum_probs=60.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCee---eecCCcccHHHHHHHhCCC-CccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDA---FNYKEETDLKATLKRYFPD-GIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~i~~~~~~-~~d~  106 (223)
                      +++.+||=. .|.|..+..+++. |++|++++.|++-++.+++..   +....   .+..+. ++...-.....+ .+|.
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~fd~  132 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA-NWLTLDKDVPAGDGFDA  132 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEEC-CGGGHHHHSCCTTCEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeec-cccccccccCCCCCceE
Confidence            567788888 8999999999886 899999999999887776321   11100   000111 111111222233 7998


Q ss_pred             EEcCCCh---------------HHHHHHHHhhccCcEEEE
Q 043295          107 YFDNVGG---------------EMLEAAVANMNLFGRVAA  131 (223)
Q Consensus       107 vid~~g~---------------~~~~~~~~~l~~~G~~v~  131 (223)
                      |+.....               ..+..+.+.|+|||.++.
T Consensus       133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            8753210               157788899999999876

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.19  E-value=0.00048  Score=49.29  Aligned_cols=72  Identities=14%  Similarity=0.129  Sum_probs=47.8

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCC--CCccEEEcC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFP--DGIDVYFDN  110 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~--~~~d~vid~  110 (223)
                      +|+++||+   +++|.+.++.....|++|+.+++++++.+.+.     ....|-.+.++..+.+.+...  +++|+++++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~-----~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnn   80 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF-----GVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   80 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSE-----EEECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCce-----EEEEecCCHHHHHHHHHHHHHhcCCceEEEee
Confidence            57899999   79999999999999999999998865533221     122344443122222222222  369999988


Q ss_pred             CC
Q 043295          111 VG  112 (223)
Q Consensus       111 ~g  112 (223)
                      .|
T Consensus        81 AG   82 (237)
T d1uzma1          81 AG   82 (237)
T ss_dssp             CS
T ss_pred             ec
Confidence            76

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.18  E-value=0.0055  Score=43.96  Aligned_cols=76  Identities=22%  Similarity=0.291  Sum_probs=48.2

Q ss_pred             CCCEEEEE---C--chHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCeee--ecCCcccH---HHHHHHhCCC
Q 043295           36 KGEKVFVS---G--AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDAF--NYKEETDL---KATLKRYFPD  102 (223)
Q Consensus        36 ~g~~vlI~---g--~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~~--~~~~~~~~---~~~i~~~~~~  102 (223)
                      +|+++||+   |  ++|.+.++.....|++|+.+.++++..+.+.+   ..+....+  |-.+.++.   .+.+.+.. +
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-g   85 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF-G   85 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhc-C
Confidence            68899999   3  69999999888999999999988765443331   23332332  33333122   22222222 3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        86 ~iDilVnnag   95 (256)
T d1ulua_          86 GLDYLVHAIA   95 (256)
T ss_dssp             SEEEEEECCC
T ss_pred             CceEEEeccc
Confidence            6999998876

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=96.17  E-value=0.015  Score=43.20  Aligned_cols=98  Identities=19%  Similarity=0.150  Sum_probs=63.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhC--CCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYF--PDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~--~~~~d~vi  108 (223)
                      .+|++||=. ++.|..++++|+ .+.+|++++.++..++.+++.   .|.+.+- .-.. +..+.++...  ++.||+|+
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~-~i~~-d~~~~~~~~~~~~~~fD~Vi  220 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVR-VLEA-NAFDLLRRLEKEGERFDLVV  220 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEE-EEES-CHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcc-eeec-cHHHHhhhhHhhhcCCCEEE
Confidence            578888877 778888888775 456999999999988877642   4554321 1111 3333333322  23799886


Q ss_pred             -cCC--C--h-----------HHHHHHHHhhccCcEEEEEccc
Q 043295          109 -DNV--G--G-----------EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       109 -d~~--g--~-----------~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                       |..  +  .           +.+..++++|+|||.++.+...
T Consensus       221 ~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         221 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence             421  1  1           1345677899999999988654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0026  Score=44.09  Aligned_cols=93  Identities=17%  Similarity=0.105  Sum_probs=58.6

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      .++|+|+   |.+|..+++.+...|.+|.+++++++++.... ..++..+ .|..+.    +.+.+... +.|+||.++|
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~-~~~~~~~~gD~~d~----~~l~~al~-~~d~vi~~~g   76 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG-PRPAHVVVGDVLQA----ADVDKTVA-GQDAVIVLLG   76 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSS-CCCSEEEESCTTSH----HHHHHHHT-TCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccc-ccccccccccccch----hhHHHHhc-CCCEEEEEec
Confidence            4789999   78999999888888999999999988765433 3333222 233332    23333332 4899999987


Q ss_pred             hH-----------HHHHHHHhhccC--cEEEEEccc
Q 043295          113 GE-----------MLEAAVANMNLF--GRVAACGVI  135 (223)
Q Consensus       113 ~~-----------~~~~~~~~l~~~--G~~v~~g~~  135 (223)
                      ..           .....++.++..  .+++.++..
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~  112 (205)
T d1hdoa_          77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (205)
T ss_dssp             CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             cCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEeee
Confidence            41           122344444433  477777643

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.041  Score=42.03  Aligned_cols=105  Identities=17%  Similarity=0.208  Sum_probs=65.9

Q ss_pred             hHHHHHHHHh-hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHh----------hCC--Ce-eeecCC
Q 043295           25 TAYVGFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEK----------LGF--DD-AFNYKE   88 (223)
Q Consensus        25 ta~~~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~----------~g~--~~-~~~~~~   88 (223)
                      ...+.+.+.. ++|++++=. +|+|..+.++|+..|+ +|++++.++...+.+++.          +|.  .. .+....
T Consensus       204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~  283 (406)
T d1u2za_         204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  283 (406)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence            4445565666 899987777 8999999999999987 899999998877666521          111  00 111111


Q ss_pred             c---ccHHHHHHHhCCCCccEEEc-CC--Ch---HHHHHHHHhhccCcEEEEEc
Q 043295           89 E---TDLKATLKRYFPDGIDVYFD-NV--GG---EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus        89 ~---~~~~~~i~~~~~~~~d~vid-~~--g~---~~~~~~~~~l~~~G~~v~~g  133 (223)
                      .   .+..+....    .+|+++- +.  +.   ..+...++.|++||++|..-
T Consensus       284 ~f~~~~~~d~~~~----~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         284 SFVDNNRVAELIP----QCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             CSTTCHHHHHHGG----GCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             chhhccccccccc----cceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence            0   011111111    2667763 22  22   24677888999999999754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.11  E-value=0.029  Score=36.63  Aligned_cols=84  Identities=12%  Similarity=0.154  Sum_probs=60.5

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChHHH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEML  116 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~  116 (223)
                      +|.+.  |.+|.+.+.-....|.+++...+++++.+.+.+++|....-      +..+.+.     ..|+||=|+-...+
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~------~~~~~~~-----~~dvIilavkp~~~   70 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAM------SHQDLID-----QVDLVILGIKPQLF   70 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCS------SHHHHHH-----TCSEEEECSCGGGH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeec------hhhhhhh-----ccceeeeecchHhH
Confidence            35566  88888777655666889999999999888876578864432      2333333     38999999987777


Q ss_pred             HHHHHhhccCcEEEEEc
Q 043295          117 EAAVANMNLFGRVAACG  133 (223)
Q Consensus       117 ~~~~~~l~~~G~~v~~g  133 (223)
                      ...+..+.++..++.+.
T Consensus        71 ~~vl~~l~~~~~iis~~   87 (152)
T d2ahra2          71 ETVLKPLHFKQPIISMA   87 (152)
T ss_dssp             HHHHTTSCCCSCEEECC
T ss_pred             HHHhhhcccceeEeccc
Confidence            77888888877777554

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0082  Score=42.75  Aligned_cols=46  Identities=20%  Similarity=0.112  Sum_probs=40.2

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD   81 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~   81 (223)
                      +|+.+||+   +++|.+.++-....|++|+.+++++++.+.+.++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Confidence            68999999   89999999999999999999999988887776677653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.07  E-value=0.046  Score=35.59  Aligned_cols=81  Identities=25%  Similarity=0.292  Sum_probs=55.0

Q ss_pred             EEEEE--CchHHHHHH-HHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChHH
Q 043295           39 KVFVS--GAYGHLVGQ-YAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEM  115 (223)
Q Consensus        39 ~vlI~--g~vG~~a~q-la~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~  115 (223)
                      +|.+.  |.+|.+.++ +.+.-+.+|++.++++++.+.+.+++|.... +..+  .    +     ...|+||=|+-...
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~-~~~~--~----v-----~~~Div~lavkP~~   69 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETS-ATLP--E----L-----HSDDVLILAVKPQD   69 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEE-SSCC--C----C-----CTTSEEEECSCHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccc-cccc--c----c-----cccceEEEecCHHH
Confidence            46666  889987776 4554447999999999998888756776322 2111  1    1     13789998888666


Q ss_pred             HHHHHHhhccCcEEEE
Q 043295          116 LEAAVANMNLFGRVAA  131 (223)
Q Consensus       116 ~~~~~~~l~~~G~~v~  131 (223)
                      +...+.-+++.+.++.
T Consensus        70 ~~~v~~~l~~~~~~vi   85 (152)
T d1yqga2          70 MEAACKNIRTNGALVL   85 (152)
T ss_dssp             HHHHHTTCCCTTCEEE
T ss_pred             HHHhHHHHhhcccEEe
Confidence            7777777766665543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.04  E-value=0.0025  Score=44.95  Aligned_cols=94  Identities=14%  Similarity=0.119  Sum_probs=58.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc---C----CeEEEEecCHHHHHHHHHh--------hCCCeeeecCCcccHHHHHHH
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG---G----CYVVGSAGTNEKVAILKEK--------LGFDDAFNYKEETDLKATLKR   98 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~---g----~~v~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~i~~   98 (223)
                      +++++||.. ++.|-.++.+++..   |    .+|+++...++-.+.+++.        .+...+.....  +..+..  
T Consensus        79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~--d~~~~~--  154 (223)
T d1r18a_          79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG--DGRKGY--  154 (223)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES--CGGGCC--
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec--cccccc--
Confidence            899999999 88888777777665   3    3899999888765555421        12222211111  111000  


Q ss_pred             hCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEE
Q 043295           99 YFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus        99 ~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~  132 (223)
                      ...+.||.|+-+.+- ......++.|++||++|..
T Consensus       155 ~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         155 PPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVP  189 (223)
T ss_dssp             GGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred             ccccceeeEEEEeechhchHHHHHhcCCCcEEEEE
Confidence            011269988765553 3445678899999999874

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.03  E-value=0.0081  Score=40.32  Aligned_cols=98  Identities=10%  Similarity=0.002  Sum_probs=61.6

Q ss_pred             HHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCC-eeeecCCcccHHHHHHHhCCCC
Q 043295           29 GFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFD-DAFNYKEETDLKATLKRYFPDG  103 (223)
Q Consensus        29 ~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~  103 (223)
                      +|.+..  .++++|+|.  |+.+.+++..+...+.+|+.+.|+.++.+.+.+.++.. .+......        +.....
T Consensus         8 ~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~--------~~~~~~   79 (171)
T d1p77a1           8 DLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMD--------SIPLQT   79 (171)
T ss_dssp             HHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG--------GCCCSC
T ss_pred             HHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhc--------cccccc
Confidence            344444  688899999  99999998877776779999999999888776555421 11111110        011126


Q ss_pred             ccEEEcCCChHH----HHHHHHhhccCcEEEEEcc
Q 043295          104 IDVYFDNVGGEM----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       104 ~d~vid~~g~~~----~~~~~~~l~~~G~~v~~g~  134 (223)
                      +|++++|+....    .......++++..++.+-.
T Consensus        80 ~diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy  114 (171)
T d1p77a1          80 YDLVINATSAGLSGGTASVDAEILKLGSAFYDMQY  114 (171)
T ss_dssp             CSEEEECCCC-------CCCHHHHHHCSCEEESCC
T ss_pred             cceeeecccccccccccchhhhhhcccceeeeeec
Confidence            999999987321    1112344566777766544

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.02  E-value=0.0077  Score=43.34  Aligned_cols=77  Identities=16%  Similarity=0.300  Sum_probs=51.1

Q ss_pred             CCCEEEEEC-----chHHHHHHHHHHcCCeEEEEecCHHHH-HHHHHhhCCCee---eecCCc---ccHHHHHHHhCCC-
Q 043295           36 KGEKVFVSG-----AYGHLVGQYAKLGGCYVVGSAGTNEKV-AILKEKLGFDDA---FNYKEE---TDLKATLKRYFPD-  102 (223)
Q Consensus        36 ~g~~vlI~g-----~vG~~a~qla~~~g~~v~~~~~~~~~~-~~~~~~~g~~~~---~~~~~~---~~~~~~i~~~~~~-  102 (223)
                      +|+++||+|     ++|.+.++-....|++|+.++++.++. +.+.++++....   .|-.+.   ....+.+.+..+. 
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~~~   84 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAG   84 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccccC
Confidence            578999992     499999999999999999999887665 445435554221   233322   1334445444433 


Q ss_pred             -CccEEEcCCC
Q 043295          103 -GIDVYFDNVG  112 (223)
Q Consensus       103 -~~d~vid~~g  112 (223)
                       .+|+++++.|
T Consensus        85 ~~ld~~i~~ag   95 (268)
T d2h7ma1          85 NKLDGVVHSIG   95 (268)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCcceeeeccc
Confidence             6899998876

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.01  E-value=0.0027  Score=45.61  Aligned_cols=72  Identities=14%  Similarity=0.075  Sum_probs=48.2

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhC----CCeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG----FDDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      ++||+   +++|.+.++.....|++|+..+++.++.+.++ ..+    ...+.+..+...+.+.+.+.. |++|+++++.
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~-~~~~~~~~~dv~~~~~~~~~~~~~~~~~-G~iDiLVnNA   79 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE-AFAETYPQLKPMSEQEPAELIEAVTSAY-GQVDVLVSND   79 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHH-HHHHHCTTSEECCCCSHHHHHHHHHHHH-SCCCEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hhhCcEEEeccCCHHHHHHHHHHHHHHc-CCCCEEEECC
Confidence            67888   78999999998899999999998888777665 332    223333332223344444433 3699998765


Q ss_pred             C
Q 043295          112 G  112 (223)
Q Consensus       112 g  112 (223)
                      |
T Consensus        80 g   80 (252)
T d1zmta1          80 I   80 (252)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.01  E-value=0.028  Score=39.13  Aligned_cols=94  Identities=14%  Similarity=0.194  Sum_probs=62.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEcC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDN  110 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~  110 (223)
                      +++++||=. +|.|..+..+++. |++|++++.++.-.+.+++   ..+.+.+- .... +.. .+ .+..+.||+|+..
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~-~~~~-d~~-~l-~~~~~~fD~v~~~   88 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQVE-YVQG-DAE-QM-PFTDERFHIVTCR   88 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCCSEE-EEEC-CC--CC-CSCTTCEEEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccccccc-cccc-ccc-cc-ccccccccccccc
Confidence            889999999 8899988887754 7899999999987777652   23443331 1111 110 11 1122369999753


Q ss_pred             CC-----h--HHHHHHHHhhccCcEEEEEc
Q 043295          111 VG-----G--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       111 ~g-----~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      -.     .  ..+..+.++|+|||+++...
T Consensus        89 ~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          89 IAAHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            22     2  35788999999999998764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.065  Score=37.25  Aligned_cols=97  Identities=12%  Similarity=0.004  Sum_probs=67.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHh----CCCCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRY----FPDGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~----~~~~~  104 (223)
                      ...++||-. ++.|..+..+|+.+  +.+|+++..+++..+.+++   ..|....+..... +..+.+.+.    ..+.|
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~G-da~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK-PALETLDELLAAGEAGTF  136 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES-CHHHHHHHHHHTTCTTCE
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEe-ehhhcchhhhhhcccCCc
Confidence            678899888 89999999999976  5699999999887666653   3465443333332 344444332    22379


Q ss_pred             cEEEcCCC-h---HHHHHHHHhhccCcEEEEE
Q 043295          105 DVYFDNVG-G---EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       105 d~vid~~g-~---~~~~~~~~~l~~~G~~v~~  132 (223)
                      |+||--.. .   ..++.++++|++||.++.=
T Consensus       137 D~ifiD~dk~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         137 DVAVVDADKENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             EEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEe
Confidence            98864333 2   3678899999999999863

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.89  E-value=0.043  Score=38.44  Aligned_cols=68  Identities=16%  Similarity=0.140  Sum_probs=51.0

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      -.|.+|+|.  |.||..+++++...|++|++++.+..+.+.+.+..|...+ +..+          +..-..|+.+=|..
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~----------~~~~~cDIl~PcA~  105 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNA----------IYGVTCDIFAPCAL  105 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGG----------TTTCCCSEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcc----------cccccccEeccccc
Confidence            458899999  9999999999999999999999998888777756776433 2111          11225788877765


Q ss_pred             h
Q 043295          113 G  113 (223)
Q Consensus       113 ~  113 (223)
                      +
T Consensus       106 ~  106 (230)
T d1leha1         106 G  106 (230)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.88  E-value=0.06  Score=35.60  Aligned_cols=88  Identities=14%  Similarity=0.114  Sum_probs=59.7

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHhhCC-CeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEKLGF-DDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      ++|+|.  |-+|...+.-.+..|.  +|++.+++++..+.++ +.|. +........  .       .....|+|+-|+.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~-~~~~~~~~~~~~~~--~-------~~~~~dlIila~p   71 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGTTSIAK--V-------EDFSPDFVMLSSP   71 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEESCGGG--G-------GGTCCSEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH-Hhhcchhhhhhhhh--h-------hccccccccccCC
Confidence            368888  8888888888887775  8999999999999999 7776 333322111  0       0114788888887


Q ss_pred             hH----HHHHHHHhhccCcEEEEEccc
Q 043295          113 GE----MLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       113 ~~----~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      ..    .+....+.+.++..++.++..
T Consensus        72 ~~~~~~vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          72 VRTFREIAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             chhhhhhhhhhhccccccccccccccc
Confidence            53    344455566777777777643

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.81  E-value=0.0012  Score=47.07  Aligned_cols=96  Identities=18%  Similarity=0.197  Sum_probs=59.0

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCc-----ccHHHHHHHhCC-CCccEE
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEE-----TDLKATLKRYFP-DGIDVY  107 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~i~~~~~-~~~d~v  107 (223)
                      +.+|||+   +++|.+.++.....|++|+.+++++++..      .....+.....     ....+.+..... +++|++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l   75 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   75 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc------cccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence            4578999   89999999999999999999998765321      01111111110     012223333333 479999


Q ss_pred             EcCCCh----H--------HHH---------------HHHHhhccCcEEEEEcccccc
Q 043295          108 FDNVGG----E--------MLE---------------AAVANMNLFGRVAACGVISEC  138 (223)
Q Consensus       108 id~~g~----~--------~~~---------------~~~~~l~~~G~~v~~g~~~~~  138 (223)
                      +++.|.    .        .++               ..+..|+++|+++.++.....
T Consensus        76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~  133 (235)
T d1ooea_          76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM  133 (235)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG
T ss_pred             EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhc
Confidence            998762    1        111               234567788999998876543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.81  E-value=0.11  Score=36.43  Aligned_cols=89  Identities=13%  Similarity=0.098  Sum_probs=59.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhC-CCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYF-PDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~-~~~~d~vid  109 (223)
                      .++++||=. .|.|..+..+++ .|++|++++.|++-++.+++.+   +....+-..+       +.++. ++.+|+|+.
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~-~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d-------~~~l~~~~~fD~I~~  111 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGD-------VLEIAFKNEFDAVTM  111 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESC-------GGGCCCCSCEEEEEE
T ss_pred             CCCCEEEEeCCCCCccchhhcc-cceEEEEEeeccccccccccccccccccchheehh-------hhhcccccccchHhh
Confidence            667788888 788999888887 5889999999998888777432   2211111111       12222 237999886


Q ss_pred             CCCh----------HHHHHHHHhhccCcEEEE
Q 043295          110 NVGG----------EMLEAAVANMNLFGRVAA  131 (223)
Q Consensus       110 ~~g~----------~~~~~~~~~l~~~G~~v~  131 (223)
                      .-+.          ..+..+.++|+|||.++.
T Consensus       112 ~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            4321          246678889999999875

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.80  E-value=0.017  Score=41.65  Aligned_cols=76  Identities=16%  Similarity=0.198  Sum_probs=47.2

Q ss_pred             CCCEEEEE---C--chHHHHHHHHHHcCCeEEEEecCHHH---HHHHHHhhCCCeee--ecCCcccHH---HHHHHhCCC
Q 043295           36 KGEKVFVS---G--AYGHLVGQYAKLGGCYVVGSAGTNEK---VAILKEKLGFDDAF--NYKEETDLK---ATLKRYFPD  102 (223)
Q Consensus        36 ~g~~vlI~---g--~vG~~a~qla~~~g~~v~~~~~~~~~---~~~~~~~~g~~~~~--~~~~~~~~~---~~i~~~~~~  102 (223)
                      +|+++||+   |  ++|.+.++.....|++|+.++++++.   .+.+..+.+...++  |-.+..+..   +.+.+.. +
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-g   82 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL-G   82 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT-S
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHc-C
Confidence            58899999   3  69999999999999999999988643   33333122222222  222221222   2233322 3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++.+.|
T Consensus        83 ~id~lV~nag   92 (274)
T d2pd4a1          83 SLDFIVHSVA   92 (274)
T ss_dssp             CEEEEEECCC
T ss_pred             CCCeEEeecc
Confidence            6899988776

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.16  Score=37.43  Aligned_cols=99  Identities=20%  Similarity=0.230  Sum_probs=63.7

Q ss_pred             HHHHHh-hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHH----------hhCC--Cee--e--ecCCc
Q 043295           29 GFYEIS-QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKE----------KLGF--DDA--F--NYKEE   89 (223)
Q Consensus        29 ~l~~~~-~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~----------~~g~--~~~--~--~~~~~   89 (223)
                      .+.... ++++.|+=. +|.|..+.++|+..|+ +++++..++...+.+++          .+|.  ..+  +  |..+.
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~  222 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE  222 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH
T ss_pred             HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc
Confidence            344444 888887777 8999999999999988 79999999887666542          1222  111  1  11222


Q ss_pred             ccHHHHHHHhCCCCccEEEcC-C--Ch---HHHHHHHHhhccCcEEEEEc
Q 043295           90 TDLKATLKRYFPDGIDVYFDN-V--GG---EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus        90 ~~~~~~i~~~~~~~~d~vid~-~--g~---~~~~~~~~~l~~~G~~v~~g  133 (223)
                       ++.+.+.+     +|+|+-. .  +.   ..+...++.|++||++|..-
T Consensus       223 -~~~~~~~~-----advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         223 -EWRERIAN-----TSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             -HHHHHHHH-----CSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             -ccccccCc-----ceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence             33333322     5677632 2  12   24667788999999999764

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.65  E-value=0.0076  Score=42.46  Aligned_cols=96  Identities=14%  Similarity=0.102  Sum_probs=63.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHhhCC-Cee--eecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEKLGF-DDA--FNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~~g~-~~~--~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      +||++||=. .+.|..+..+++..|-  +|++++.+++..+.+++.... ..+  +..+..  ..+... .....+|+++
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~--~~~~~~-~~~~~vD~i~  148 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDAT--KPEEYR-ALVPKVDVIF  148 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTT--CGGGGT-TTCCCEEEEE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECC--Cccccc-ccccceEEEE
Confidence            999999988 8889999999999864  899999999988877733221 111  111111  011111 1112688886


Q ss_pred             cCCC-h----HHHHHHHHhhccCcEEEEEc
Q 043295          109 DNVG-G----EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       109 d~~g-~----~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ..+. .    ..+..+.+.|+++|.++.+-
T Consensus       149 ~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         149 EDVAQPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEccccchHHHHHHHHHHhcccCCeEEEEE
Confidence            5443 1    24777888999999988753

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.64  E-value=0.007  Score=42.14  Aligned_cols=91  Identities=14%  Similarity=0.075  Sum_probs=60.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCC-eeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFD-DAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      +++.+||=. .|.|..+..+++. |++|++++.|++..+.+++.   .+.. ..+..+.. ++     ...++.+|+|+.
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~-~l-----~~~~~~fD~I~~  108 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDAR-KL-----SFEDKTFDYVIF  108 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTT-SC-----CSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhccccccccccccccc-cc-----cccCcCceEEEE
Confidence            778899888 8889999998874 88999999999988777632   2221 11111111 11     011236898864


Q ss_pred             CC-----Ch-H---HHHHHHHhhccCcEEEEE
Q 043295          110 NV-----GG-E---MLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       110 ~~-----g~-~---~~~~~~~~l~~~G~~v~~  132 (223)
                      .-     .. +   .+..+.++|+|||+++..
T Consensus       109 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         109 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ecchhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            22     22 2   467788999999998754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.64  E-value=0.14  Score=33.43  Aligned_cols=85  Identities=19%  Similarity=0.139  Sum_probs=58.2

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh-HH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG-EM  115 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~-~~  115 (223)
                      +|-|.  |.+|...++-....|.+|++.++++++.+.+. +.+.... +     +..+.+++     .|++|-|+.. +.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~-~~~~~~~-~-----~~~e~~~~-----~d~ii~~v~~~~~   69 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-AAGAETA-S-----TAKAIAEQ-----CDVIITMLPNSPH   69 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEEC-S-----SHHHHHHH-----CSEEEECCSSHHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHH-Hhhhhhc-c-----cHHHHHhC-----CCeEEEEcCCHHH
Confidence            46666  99999888877788999999999999999888 6665322 1     23333333     7888888864 33


Q ss_pred             HHH-------HHHhhccCcEEEEEccc
Q 043295          116 LEA-------AVANMNLFGRVAACGVI  135 (223)
Q Consensus       116 ~~~-------~~~~l~~~G~~v~~g~~  135 (223)
                      ...       ....+.++..++.+++.
T Consensus        70 v~~v~~~~~~~~~~~~~g~iiid~sT~   96 (161)
T d1vpda2          70 VKEVALGENGIIEGAKPGTVLIDMSSI   96 (161)
T ss_dssp             HHHHHHSTTCHHHHCCTTCEEEECSCC
T ss_pred             HHHHHhCCcchhhccCCCCEEEECCCC
Confidence            333       33455666677776653

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=95.58  E-value=0.04  Score=39.22  Aligned_cols=77  Identities=17%  Similarity=0.264  Sum_probs=48.2

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCC-eEEEEecCHHH-------HHHHHHhhCCCee---eecCCcccHHHHHHHhC
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGC-YVVGSAGTNEK-------VAILKEKLGFDDA---FNYKEETDLKATLKRYF  100 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~-~v~~~~~~~~~-------~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~  100 (223)
                      +|+.++||+   +++|.+.++.....|+ +|+.+.++..+       .+.++ ..|....   .|-.+.++..+.+....
T Consensus         7 ~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~-~~g~~v~~~~~Dv~d~~~~~~~~~~i~   85 (259)
T d2fr1a1           7 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELE-ALGARTTVAACDVTDRESVRELLGGIG   85 (259)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHH-HTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred             CCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHH-hccccccccccccchHHHHHHhhcccc
Confidence            678899999   8999999988888898 57777776322       22333 4555222   34444323333333333


Q ss_pred             CC-CccEEEcCCC
Q 043295          101 PD-GIDVYFDNVG  112 (223)
Q Consensus       101 ~~-~~d~vid~~g  112 (223)
                      .. ++|.++.+.|
T Consensus        86 ~~~~i~~vv~~ag   98 (259)
T d2fr1a1          86 DDVPLSAVFHAAA   98 (259)
T ss_dssp             TTSCEEEEEECCC
T ss_pred             ccccccccccccc
Confidence            33 7899998876

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.0044  Score=37.06  Aligned_cols=34  Identities=15%  Similarity=0.095  Sum_probs=30.2

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHH
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNE   69 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~   69 (223)
                      ++++|+|.  |..|+.+++++...|++|++.+.+..
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            57889999  99999999999999999999997543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=95.53  E-value=0.17  Score=33.47  Aligned_cols=94  Identities=15%  Similarity=0.117  Sum_probs=56.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCC-eeeecCCcccHHHHHHHhCCCCccEEE-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFD-DAFNYKEETDLKATLKRYFPDGIDVYF-  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~-~~~~~~~~~~~~~~i~~~~~~~~d~vi-  108 (223)
                      .+|.+||=. ++.|..++..+ ..|++|++++.+++..+.+++   .+|.. .+...+.. .+... ....++.||+|| 
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~-~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d-~~~~~-~~~~~~~fD~If~  116 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAA-SEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVE-VFLPE-AKAQGERFTVAFM  116 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHH-HTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHH-HHHHH-HHHTTCCEEEEEE
T ss_pred             cCCCeEEEeccccchhhhhhh-hccchhhhcccCHHHHhhhhHHHHhhccccceeeeehh-ccccc-ccccCCccceeEE
Confidence            678888777 88888777644 468999999999888776653   35553 34332221 22222 223334799996 


Q ss_pred             cCC---C-hHHHHHHH--HhhccCcEEEE
Q 043295          109 DNV---G-GEMLEAAV--ANMNLFGRVAA  131 (223)
Q Consensus       109 d~~---g-~~~~~~~~--~~l~~~G~~v~  131 (223)
                      |..   + ...+....  .+++++|.++.
T Consensus       117 DPPY~~~~~~~l~~l~~~~ll~~~g~ivi  145 (171)
T d1ws6a1         117 APPYAMDLAALFGELLASGLVEAGGLYVL  145 (171)
T ss_dssp             CCCTTSCTTHHHHHHHHHTCEEEEEEEEE
T ss_pred             ccccccCHHHHHHHHHHcCCcCCCeEEEE
Confidence            432   2 23344333  36788887764

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.50  E-value=0.0053  Score=43.84  Aligned_cols=75  Identities=13%  Similarity=0.181  Sum_probs=46.6

Q ss_pred             CEEEEE---CchHHHHHHHHH---HcCCeEEEEecCHHHHHHHHH--hhCCC---eeeecCCcccH---HHHHHHhCC-C
Q 043295           38 EKVFVS---GAYGHLVGQYAK---LGGCYVVGSAGTNEKVAILKE--KLGFD---DAFNYKEETDL---KATLKRYFP-D  102 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~---~~g~~v~~~~~~~~~~~~~~~--~~g~~---~~~~~~~~~~~---~~~i~~~~~-~  102 (223)
                      ++|||+   +++|.+.++...   ..|++|+.+++++++.+.+++  +.+..   ...|..+.++.   .+.++.... +
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            589999   799998775543   358899999999887665541  11221   12344443233   333333333 3


Q ss_pred             CccEEEcCCC
Q 043295          103 GIDVYFDNVG  112 (223)
Q Consensus       103 ~~d~vid~~g  112 (223)
                      ++|+++++.|
T Consensus        83 ~iDiLvnNAg   92 (248)
T d1snya_          83 GLNVLFNNAG   92 (248)
T ss_dssp             CCSEEEECCC
T ss_pred             CcceEEeecc
Confidence            7999998765

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.40  E-value=0.13  Score=34.19  Aligned_cols=96  Identities=17%  Similarity=0.032  Sum_probs=58.7

Q ss_pred             EEEEE--CchHHHHHHHHHHcC-CeEEEEec--CHHHHHHHHHhhCCCeeeecCCcccHHHHHHHh---C------CCCc
Q 043295           39 KVFVS--GAYGHLVGQYAKLGG-CYVVGSAG--TNEKVAILKEKLGFDDAFNYKEETDLKATLKRY---F------PDGI  104 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g-~~v~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~---~------~~~~  104 (223)
                      +|.|.  |-+|+...+.+.... .+++++..  .......+. +.+.+......+  ........-   .      ..++
T Consensus         4 rIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v   80 (172)
T d2czca2           4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAK-ELGIPVYAASEE--FIPRFEKEGFEVAGTLNDLLEKV   80 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHH-HTTCCEEESSGG--GHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhh-hcCceeeccccc--ceeeecccCccccchhhhhhccC
Confidence            67788  899988887766543 57877763  223344455 555543221111  111111100   0      0269


Q ss_pred             cEEEcCCCh-HHHHHHHHhhccCcEEEEEccccc
Q 043295          105 DVYFDNVGG-EMLEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       105 d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      |+|+||+|. ...+.+-..+..|.+.|..+.+..
T Consensus        81 DvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~  114 (172)
T d2czca2          81 DIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA  114 (172)
T ss_dssp             SEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCG
T ss_pred             CEEEECCCCCCCHHHHHHHHHcCCCEEEECCCCc
Confidence            999999996 567777788999999998887544

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.39  E-value=0.015  Score=41.18  Aligned_cols=99  Identities=15%  Similarity=0.171  Sum_probs=61.8

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCe-------EEEEecCHHHHHHHHHhh---CCCe---eeecCCcccH---HHHHHHh
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCY-------VVGSAGTNEKVAILKEKL---GFDD---AFNYKEETDL---KATLKRY   99 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~-------v~~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~---~~~i~~~   99 (223)
                      .|||+   +++|.+.++.....|++       |+..++++++++.+.+++   |...   ..|-.+.++.   .+.+.+.
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER   82 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            35777   79999999888888887       889999988877665333   3321   1244443222   2333333


Q ss_pred             CCCCccEEEcCCCh-----------HHHH---------------HHHHhhc--cCcEEEEEcccccc
Q 043295          100 FPDGIDVYFDNVGG-----------EMLE---------------AAVANMN--LFGRVAACGVISEC  138 (223)
Q Consensus       100 ~~~~~d~vid~~g~-----------~~~~---------------~~~~~l~--~~G~~v~~g~~~~~  138 (223)
                      . +++|+++++.|.           +.++               .+++.|.  .+|+++.++...+.
T Consensus        83 ~-g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~  148 (240)
T d2bd0a1          83 Y-GHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAAT  148 (240)
T ss_dssp             T-SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             c-CCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhc
Confidence            2 369999998863           1122               2344553  46899998876553

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.31  E-value=0.015  Score=41.38  Aligned_cols=98  Identities=20%  Similarity=0.229  Sum_probs=60.2

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEe-cCHHHHHHHHH---hhCCCe---eeecCCcccH---HHHHHHhCCCCcc
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSA-GTNEKVAILKE---KLGFDD---AFNYKEETDL---KATLKRYFPDGID  105 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~-~~~~~~~~~~~---~~g~~~---~~~~~~~~~~---~~~i~~~~~~~~d  105 (223)
                      .+||+   +++|.+.++.....|++|+.++ +++++.+.+.+   +.|...   ..|-.+.++.   .+.+.+.. +++|
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~-g~iD   81 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAW-GTID   81 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHS-SCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHc-CCCC
Confidence            56777   7899999999999999998875 55555554432   345422   1344443222   23333333 3799


Q ss_pred             EEEcCCChH-----------HH---------------HHHHHhh--ccCcEEEEEccccc
Q 043295          106 VYFDNVGGE-----------ML---------------EAAVANM--NLFGRVAACGVISE  137 (223)
Q Consensus       106 ~vid~~g~~-----------~~---------------~~~~~~l--~~~G~~v~~g~~~~  137 (223)
                      +++++.|..           .+               +.++..|  +.+|++|.++...+
T Consensus        82 iLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~  141 (244)
T d1edoa_          82 VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVG  141 (244)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHH
T ss_pred             ccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhh
Confidence            999988631           11               1234555  45799999987654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=95.30  E-value=0.099  Score=36.20  Aligned_cols=94  Identities=10%  Similarity=0.074  Sum_probs=62.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHH---cCCeEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKL---GGCYVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~---~g~~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      +++.+||=. .|.|..+..+++.   .+++|++++.|+.-++.+++.+   +....+..... +.    .....+.+|++
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~-d~----~~~~~~~~d~i  112 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN-DI----RHVEIKNASMV  112 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECS-CT----TTCCCCSEEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccc-hh----hccccccceee
Confidence            788898888 8899999999985   4789999999999888887433   22211111111 11    11222256666


Q ss_pred             EcCCC-------h--HHHHHHHHhhccCcEEEEEc
Q 043295          108 FDNVG-------G--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       108 id~~g-------~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +-+..       .  ..++.+.+.|+|||.++...
T Consensus       113 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         113 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            54322       1  25888999999999999764

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.031  Score=40.22  Aligned_cols=94  Identities=13%  Similarity=0.005  Sum_probs=64.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      .++.+||=. .|.|..+..+++.. +.++++++.++.-.+.++ +......+...+..++     .+..+.+|+|+..-.
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~-~~~~~~~~~~~d~~~l-----~~~~~sfD~v~~~~~  156 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAA-KRYPQVTFCVASSHRL-----PFSDTSMDAIIRIYA  156 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHH-HHCTTSEEEECCTTSC-----SBCTTCEEEEEEESC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhh-cccccccceeeehhhc-----cCCCCCEEEEeecCC
Confidence            567788877 78899888998876 679999999999888888 4332211111111011     011236999986555


Q ss_pred             hHHHHHHHHhhccCcEEEEEcc
Q 043295          113 GEMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 ~~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      -..+....+.|+|||.++....
T Consensus       157 ~~~~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         157 PCKAEELARVVKPGGWVITATP  178 (268)
T ss_dssp             CCCHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCcEEEEEee
Confidence            4567889999999999988753

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=95.07  E-value=0.068  Score=38.01  Aligned_cols=95  Identities=6%  Similarity=-0.046  Sum_probs=65.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhC--CCCccEEEcCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYF--PDGIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~--~~~~d~vid~~  111 (223)
                      .++.+||=. +|.|..+.+++...+.+|++++.++.-++.+++.+.....+++... ++    .+..  ++.||+|+..-
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~-d~----~~~~~~~~~fD~I~~~~  166 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILA-SM----ETATLPPNTYDLIVIQW  166 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEES-CG----GGCCCCSSCEEEEEEES
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEc-cc----cccccCCCccceEEeec
Confidence            466788877 8999999999988777999999999999999855543223322221 11    1222  23699886532


Q ss_pred             -----ChH----HHHHHHHhhccCcEEEEEcc
Q 043295          112 -----GGE----MLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       112 -----g~~----~~~~~~~~l~~~G~~v~~g~  134 (223)
                           ..+    .+..+.+.|+++|.++....
T Consensus       167 vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         167 TAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence                 222    36778889999999987543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.04  E-value=0.065  Score=33.86  Aligned_cols=70  Identities=19%  Similarity=0.152  Sum_probs=49.5

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeee-ecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAF-NYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      +++|.  |.+|..+++.+...|.+|++++.++++.+.++ ..|...++ |..+. +.   +.+..-...|.++-+++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~-~~~~~~~~gd~~~~-~~---l~~a~i~~a~~vi~~~~~   74 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-SYATHAVIANATEE-NE---LLSLGIRNFEYVIVAIGA   74 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT-TTCSEEEECCTTCT-TH---HHHHTGGGCSEEEECCCS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH-HhCCcceeeecccc-hh---hhccCCccccEEEEEcCc
Confidence            45667  99999999999999999999999999999888 67764333 22222 22   222211257888777765

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.01  E-value=0.13  Score=31.43  Aligned_cols=88  Identities=8%  Similarity=-0.021  Sum_probs=57.4

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHH--HHHHHHhhCCCeeee--cCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEK--VAILKEKLGFDDAFN--YKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~--~~~~~~~~g~~~~~~--~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      -.|++|+|.  |.+|..-++.+...|++|+.++.....  ..++. +-+. ....  +.+. ++         .++++|+
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~-~~~i-~~~~~~~~~~-dl---------~~~~lv~   77 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWAN-EGML-TLVEGPFDET-LL---------DSCWLAI   77 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHT-TTSC-EEEESSCCGG-GG---------TTCSEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHh-cCCc-eeeccCCCHH-Hh---------CCCcEEe
Confidence            357899999  899999999999999998887754332  22222 2122 1121  1111 11         1589999


Q ss_pred             cCCChHHH-HHHHHhhccCcEEEEEcc
Q 043295          109 DNVGGEML-EAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 d~~g~~~~-~~~~~~l~~~G~~v~~g~  134 (223)
                      -+.+.+.+ .......++.|.+|-+..
T Consensus        78 ~at~d~~~n~~i~~~a~~~~ilVNv~D  104 (113)
T d1pjqa1          78 AATDDDTVNQRVSDAAESRRIFCNVVD  104 (113)
T ss_dssp             ECCSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred             ecCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            99887544 466677888898887653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.98  E-value=0.046  Score=37.40  Aligned_cols=84  Identities=19%  Similarity=0.103  Sum_probs=57.2

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG  113 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~  113 (223)
                      .|++|.|.  |.+|...+++++.+|++|++.++..+... ..  .+. .     .. ++.+.+++     .|+++-+...
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~-~~--~~~-~-----~~-~l~~~l~~-----sDii~~~~pl  106 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL-EK--KGY-Y-----VD-SLDDLYKQ-----ADVISLHVPD  106 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HH--TTC-B-----CS-CHHHHHHH-----CSEEEECSCC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCccccccc-cc--cee-e-----ec-cccccccc-----cccccccCCc
Confidence            36799999  99999999999999999999986654322 11  121 1     11 45444444     7888766542


Q ss_pred             --HH----HHHHHHhhccCcEEEEEcc
Q 043295          114 --EM----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       114 --~~----~~~~~~~l~~~G~~v~~g~  134 (223)
                        ++    -...+..|+++..+|-++-
T Consensus       107 t~~T~~li~~~~l~~mk~~a~lIN~sR  133 (197)
T d1j4aa1         107 VPANVHMINDESIAKMKQDVVIVNVSR  133 (197)
T ss_dssp             CGGGTTCBSHHHHHHSCTTEEEEECSC
T ss_pred             cccccccccHHHHhhhCCccEEEecCc
Confidence              21    2466788888888887764

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.89  E-value=0.12  Score=37.60  Aligned_cols=95  Identities=17%  Similarity=0.106  Sum_probs=66.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCC--------Cee-eecCCcccHHHHHHHhCCCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGF--------DDA-FNYKEETDLKATLKRYFPDG  103 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~--------~~~-~~~~~~~~~~~~i~~~~~~~  103 (223)
                      ...++|||. ||-|..+-.+.+..+. +|.++.-.++-.+.++ ++-.        .++ +-..   +-.+.+++..++.
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~-~~f~~~~~~~~~~r~~i~~~---Da~~~l~~~~~~~  154 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSK-QFFPDVAIGYEDPRVNLVIG---DGVAFLKNAAEGS  154 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHH-HHCHHHHGGGGSTTEEEEES---CHHHHHHTSCTTC
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHH-HhchhhhccccCCCcEEEEc---cHHHHHhhccccC
Confidence            566899999 8889989999988776 8999998888888887 4321        111 1111   3455565554458


Q ss_pred             ccEEE-cCCCh----------HHHHHHHHhhccCcEEEEEc
Q 043295          104 IDVYF-DNVGG----------EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       104 ~d~vi-d~~g~----------~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +|+|| |+...          +-++.+.++|+++|.++.=.
T Consensus       155 yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         155 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            99775 54421          24778889999999998754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.043  Score=39.00  Aligned_cols=77  Identities=13%  Similarity=0.226  Sum_probs=47.1

Q ss_pred             CCCEEEEE---C--chHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCeeeecCC--cccHHHHHHHhCC--CC
Q 043295           36 KGEKVFVS---G--AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDAFNYKE--ETDLKATLKRYFP--DG  103 (223)
Q Consensus        36 ~g~~vlI~---g--~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~--~~~~~~~i~~~~~--~~  103 (223)
                      +|+++||+   |  ++|.+.+......|++|+.++++++..+.+.+   ..+.........  ..+..+...+...  +.
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   83 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcccc
Confidence            58899999   3  58888888888999999999988765444431   233333322222  1122222333322  26


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+.+++.+
T Consensus        84 ~d~~v~~a~   92 (258)
T d1qsga_          84 FDGFVHSIG   92 (258)
T ss_dssp             EEEEEECCC
T ss_pred             cceEEEeec
Confidence            888887653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.87  E-value=0.023  Score=38.72  Aligned_cols=93  Identities=15%  Similarity=0.132  Sum_probs=59.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCe-eeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDD-AFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~-~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .++++||=. +|.|..++.+++ .+.+|++++.++...+.+++   ..+... -+..... ++.+   ...++.+|+|+-
T Consensus        51 ~~~~~VLDiGcG~G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~-d~~~---~~~~~~fD~Ii~  125 (194)
T d1dusa_          51 DKDDDILDLGCGYGVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS-DLYE---NVKDRKYNKIIT  125 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC-STTT---TCTTSCEEEEEE
T ss_pred             CCCCeEEEEeecCChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEEc-chhh---hhccCCceEEEE
Confidence            788998888 889998888776 46799999999988877763   223321 1111111 1111   112237999885


Q ss_pred             C----CChH----HHHHHHHhhccCcEEEEE
Q 043295          110 N----VGGE----MLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       110 ~----~g~~----~~~~~~~~l~~~G~~v~~  132 (223)
                      .    .+.+    .+..+.+.|+++|.++..
T Consensus       126 ~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         126 NPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             CCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            2    2322    366778899999988654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.71  E-value=0.16  Score=34.36  Aligned_cols=92  Identities=13%  Similarity=0.088  Sum_probs=59.7

Q ss_pred             CCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH---hhCCCee-eecCCcccHHHHHHHh-CCCCccEEEc
Q 043295           36 KGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE---KLGFDDA-FNYKEETDLKATLKRY-FPDGIDVYFD  109 (223)
Q Consensus        36 ~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~---~~g~~~~-~~~~~~~~~~~~i~~~-~~~~~d~vid  109 (223)
                      ++.+||=. +|.|..+..+++ .|++|++++.++..++.+++   ..|.+.+ +...+.       .+. ..+.||+|+.
T Consensus        30 ~~grvLDiGcG~G~~~~~la~-~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~-------~~~~~~~~fD~I~~  101 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAA-NGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDL-------NTLTFDGEYDFILS  101 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCT-------TTCCCCCCEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHH-HhhhhccccCcHHHHHHHHHHhhhccccchhhhheec-------ccccccccccEEEE
Confidence            33488888 889999988876 48999999999988776652   3344432 111110       111 1236899875


Q ss_pred             CC-----Ch----HHHHHHHHhhccCcEEEEEccc
Q 043295          110 NV-----GG----EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       110 ~~-----g~----~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      ..     ..    ..+..+.++|+++|.++.....
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1         102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            22     11    2566778899999998876543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=94.67  E-value=0.07  Score=39.32  Aligned_cols=98  Identities=12%  Similarity=0.069  Sum_probs=62.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhh---CC--CeeeecCCcccHHHHHHHhC--CCCcc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKL---GF--DDAFNYKEETDLKATLKRYF--PDGID  105 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~---g~--~~~~~~~~~~~~~~~i~~~~--~~~~d  105 (223)
                      .+|++||=. +++|..++..++ .|+ +|++++.++...+.+++.+   |.  +.+ ..-.. +..+.++...  ++.||
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~-~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~-~~i~~-d~~~~l~~~~~~~~~fD  219 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAM-GGAMATTSVDLAKRSRALSLAHFEANHLDMANH-QLVVM-DVFDYFKYARRHHLTYD  219 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTE-EEEES-CHHHHHHHHHHTTCCEE
T ss_pred             hCCCceeecCCCCcHHHHHHHh-CCCceEEEecCCHHHHHHHHHHHHHhcccCcce-EEEEc-cHHHHHHHHHhhcCCCC
Confidence            789999988 888877766554 577 8999999998887776432   32  111 11111 3444444332  23799


Q ss_pred             EEE-cCCC---h------------HHHHHHHHhhccCcEEEEEccc
Q 043295          106 VYF-DNVG---G------------EMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus       106 ~vi-d~~g---~------------~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      +|| |...   +            +.+..++++|+|||.++.+...
T Consensus       220 ~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         220 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            886 4221   0            1455678899999999987654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.62  E-value=0.08  Score=35.67  Aligned_cols=85  Identities=24%  Similarity=0.168  Sum_probs=58.1

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC-
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-  112 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-  112 (223)
                      .+.++.|.  |.+|...+++++..|.+|++.++...+.. .. ..+...      . ++.+.+.+     .|+|.-+.. 
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~-~~-~~~~~~------~-~l~ell~~-----sDiv~~~~Pl  108 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPAR-AA-QLGIEL------L-SLDDLLAR-----ADFISVHLPK  108 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHH-HH-HHTCEE------C-CHHHHHHH-----CSEEEECCCC
T ss_pred             cceeeeeccccchhHHHHHHhhhccceEEeecCCCChhH-Hh-hcCcee------c-cHHHHHhh-----CCEEEEcCCC
Confidence            46788888  99999999999999999999997655533 23 344321      1 34444443     788876554 


Q ss_pred             hH-H----HHHHHHhhccCcEEEEEcc
Q 043295          113 GE-M----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 ~~-~----~~~~~~~l~~~G~~v~~g~  134 (223)
                      .+ +    -...+..|+++..+|-++-
T Consensus       109 t~~T~~lin~~~l~~mk~~a~lIN~sR  135 (184)
T d1ygya1         109 TPETAGLIDKEALAKTKPGVIIVNAAR  135 (184)
T ss_dssp             STTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred             CchhhhhhhHHHHhhhCCCceEEEecc
Confidence            22 1    2367778888888887764

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.59  E-value=0.049  Score=37.60  Aligned_cols=96  Identities=13%  Similarity=0.073  Sum_probs=61.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      +||++||=. .+.|..+..+++..+. +|++++.++...+.+++.   .+....+-.+.. .. ... ......+|+++.
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~-~~-~~~-~~~~~~vd~v~~  131 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDAS-KP-WKY-SGIVEKVDLIYQ  131 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTT-CG-GGT-TTTCCCEEEEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeecc-Cc-ccc-ccccceEEEEEe
Confidence            999999988 7889999999988754 999999999888777632   221111111111 10 000 011125777765


Q ss_pred             CCC--h---HHHHHHHHhhccCcEEEEEc
Q 043295          110 NVG--G---EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       110 ~~g--~---~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ...  .   ..+..+.+.|++||.++.+.
T Consensus       132 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         132 DIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            432  2   24677888999999998764

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.47  E-value=0.36  Score=36.27  Aligned_cols=97  Identities=13%  Similarity=0.078  Sum_probs=65.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhh---CCCee--------------eecCCcccHHHH
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKL---GFDDA--------------FNYKEETDLKAT   95 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~---g~~~~--------------~~~~~~~~~~~~   95 (223)
                      -++.+||=. ++.|.-++++|+..|+ +|++.+.+++-.+.+++.+   +....              +..... +....
T Consensus        44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~-Da~~~  122 (375)
T d2dula1          44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHD-DANRL  122 (375)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEES-CHHHH
T ss_pred             hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehh-hhhhh
Confidence            456666665 9999999999998888 8999999999888887432   22211              111111 22222


Q ss_pred             HHHhCCCCccEE-EcCCCh--HHHHHHHHhhccCcEEEEEc
Q 043295           96 LKRYFPDGIDVY-FDNVGG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus        96 i~~~~~~~~d~v-id~~g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      + ...+..||+| +|.-|+  +.++.++++++.+|.+....
T Consensus       123 ~-~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         123 M-AERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             H-HHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             h-HhhcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEe
Confidence            2 2233379966 899996  57899999999888776554

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=94.45  E-value=0.061  Score=36.60  Aligned_cols=86  Identities=21%  Similarity=0.164  Sum_probs=57.1

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC-
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-  112 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-  112 (223)
                      .|++|.|.  |.+|...+++++..|++|++.++.... +... ..+....    .  ++.+.+++     .|+|.-+.. 
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~-~~~~-~~~~~~~----~--~l~~ll~~-----sD~i~~~~pl  114 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD-GVER-ALGLQRV----S--TLQDLLFH-----SDCVTLHCGL  114 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCT-THHH-HHTCEEC----S--SHHHHHHH-----CSEEEECCCC
T ss_pred             eCceEEEeccccccccceeeeeccccceeeccCcccc-cchh-hhccccc----c--chhhcccc-----CCEEEEeecc
Confidence            46799999  999999999999999999999865443 2222 3443221    1  34444443     677765544 


Q ss_pred             hH-H----HHHHHHhhccCcEEEEEcc
Q 043295          113 GE-M----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 ~~-~----~~~~~~~l~~~G~~v~~g~  134 (223)
                      .+ +    -...+..|+++..+|-++-
T Consensus       115 t~~T~~li~~~~l~~mk~~a~lIN~sR  141 (193)
T d1mx3a1         115 NEHNHHLINDFTVKQMRQGAFLVNTAR  141 (193)
T ss_dssp             CTTCTTSBSHHHHTTSCTTEEEEECSC
T ss_pred             cccchhhhhHHHHhccCCCCeEEecCC
Confidence            22 1    2356778888888887763

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.41  E-value=0.36  Score=31.43  Aligned_cols=41  Identities=15%  Similarity=0.039  Sum_probs=34.1

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF   80 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~   80 (223)
                      +|-+.  |.+|...+.-....|++|++..+++++.+.+. ..+.
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~-~~~~   45 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-AAGA   45 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-HTTC
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhh-hhhc
Confidence            56677  99998888777778999999999999988887 6665

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.39  E-value=0.11  Score=35.83  Aligned_cols=96  Identities=15%  Similarity=0.120  Sum_probs=61.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHh---CCC-Cc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRY---FPD-GI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~---~~~-~~  104 (223)
                      .+.++||-. ++.|..++.+|+.+  +.+|++++.+++..+.+++   ..|...-+..... +..+.+.++   .+. .+
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~G-d~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNG-ASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-CHHHHGGGHHHHSCCCCE
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeec-cccccccchhhccccccc
Confidence            666888888 78999999999876  5699999999887766652   4566432323222 344443332   222 69


Q ss_pred             cEEE-cCCChH-----HHHHHHHhhccCcEEEE
Q 043295          105 DVYF-DNVGGE-----MLEAAVANMNLFGRVAA  131 (223)
Q Consensus       105 d~vi-d~~g~~-----~~~~~~~~l~~~G~~v~  131 (223)
                      |++| |+--..     .+...+++|++||.++.
T Consensus       134 D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         134 DMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence            9775 543332     23455667999987653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.38  E-value=0.092  Score=36.74  Aligned_cols=95  Identities=11%  Similarity=0.022  Sum_probs=61.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhCC----CeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLGF----DDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      +||++||=. .+.|..+..+++.. +..|++++.++...+.++ +.-.    ...+..... ... ..... ...+|+++
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~-~~a~~~~ni~~i~~d~~-~~~-~~~~~-~~~v~~i~  148 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAERENIIPILGDAN-KPQ-EYANI-VEKVDVIY  148 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTTCTTEEEEECCTT-CGG-GGTTT-CCCEEEEE
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHhhhcccceEEEeec-cCc-ccccc-cceeEEee
Confidence            999999999 88899999999975 349999999999888777 4311    111211111 110 11111 11466676


Q ss_pred             cCCCh-----HHHHHHHHhhccCcEEEEEc
Q 043295          109 DNVGG-----EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       109 d~~g~-----~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ....-     ..+..+.+.|+++|.++..-
T Consensus       149 ~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         149 EDVAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccchHHHHHHHHHHHHhcccCceEEEEe
Confidence            65531     24677788999999988764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.37  E-value=0.22  Score=32.95  Aligned_cols=42  Identities=14%  Similarity=-0.026  Sum_probs=33.8

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF   80 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~   80 (223)
                      .+|-+.  |.+|...+.-....|.+|++..+++++.+.+. +.++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-~~~~   46 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL-ANEA   46 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHH-HTTT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-Hhcc
Confidence            356666  89998888777788999999999999988877 4443

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.36  E-value=0.048  Score=40.46  Aligned_cols=41  Identities=29%  Similarity=0.299  Sum_probs=34.4

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHH
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK   75 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~   75 (223)
                      ++|++|||+   |-+|..+++.+...|++|++++++..+...++
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ   52 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHH
Confidence            789999999   67888888777778999999999887766554

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.29  E-value=0.16  Score=37.14  Aligned_cols=98  Identities=17%  Similarity=0.136  Sum_probs=64.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCC-CeeeecCCc----ccHHHHHHHhCCCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGF-DDAFNYKEE----TDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~~----~~~~~~i~~~~~~~~d~v  107 (223)
                      ...++|||. ||-|..+-.+++..+. +|.++.-.++-.+.+++-+.. ...++....    .+-.+.+++ +++.+|+|
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~~~~yDvI  183 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEFDVI  183 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-CCCCCCEE
Confidence            667899999 8889989899987775 899999988888888832321 111111110    144555654 44479988


Q ss_pred             E-cCCC---h-------HHHHHHHHhhccCcEEEEEc
Q 043295          108 F-DNVG---G-------EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       108 i-d~~g---~-------~~~~~~~~~l~~~G~~v~~g  133 (223)
                      | |...   .       +-++.+.++|+++|.++.=+
T Consensus       184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            6 3322   1       13567778999999998754

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.05  E-value=0.38  Score=30.39  Aligned_cols=73  Identities=12%  Similarity=0.188  Sum_probs=35.8

Q ss_pred             EEEEE---CchHHHHHHHHHH-cCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           39 KVFVS---GAYGHLVGQYAKL-GGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~-~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      +|.|.   |-+|...++.... .+.++++.....+...... .-+++.++|...++...+.++.....+.-+|+-++|
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~~-~~~~DvvIDFS~p~~~~~~~~~~~~~~~~~ViGTTG   77 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLT-DGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG   77 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHHH-TTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhhc-cccCCEEEEcccHHHHHHHHHHHHhcCCCEEEeccc
Confidence            46677   6677776666554 4678777664433333333 233444444444323333333333224444444444

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=93.98  E-value=0.45  Score=30.91  Aligned_cols=89  Identities=16%  Similarity=0.155  Sum_probs=52.9

Q ss_pred             CEEEEE--CchHH-HHHHHHHHcC-CeEEEEec-CH--HHHHHHHHhhCCCeeeecCCcccHHHHHHHhCC-CCccEEEc
Q 043295           38 EKVFVS--GAYGH-LVGQYAKLGG-CYVVGSAG-TN--EKVAILKEKLGFDDAFNYKEETDLKATLKRYFP-DGIDVYFD  109 (223)
Q Consensus        38 ~~vlI~--g~vG~-~a~qla~~~g-~~v~~~~~-~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-~~~d~vid  109 (223)
                      -++.|.  |.+|. ...++.+... .++++++. +.  ....+.+ ++|.....      +..+.+.+... .++|+||+
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~-~~~i~~~~------~~~d~l~~~~~~~~iDiVf~   77 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ-RMGVTTTY------AGVEGLIKLPEFADIDFVFD   77 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH-HTTCCEES------SHHHHHHHSGGGGGEEEEEE
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhh-hcCCcccc------cceeeeeecccccccCEEEE
Confidence            367788  88886 4567777664 48888874 32  3445666 77764432      22233333222 26999999


Q ss_pred             CCCh-HHHHHHH--HhhccCcEEEEEc
Q 043295          110 NVGG-EMLEAAV--ANMNLFGRVAACG  133 (223)
Q Consensus       110 ~~g~-~~~~~~~--~~l~~~G~~v~~g  133 (223)
                      ++.. .+....+  ..+..|-.++...
T Consensus        78 ATpag~h~~~~~~~~aa~~G~~VID~s  104 (157)
T d1nvmb1          78 ATSASAHVQNEALLRQAKPGIRLIDLT  104 (157)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             cCCchhHHHhHHHHHHHHcCCEEEEcc
Confidence            9874 4555443  4455566666654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.97  E-value=0.14  Score=36.38  Aligned_cols=43  Identities=23%  Similarity=0.347  Sum_probs=32.5

Q ss_pred             CCCEEEEE---CchHHHHHH-HHHH--cCCeEEEEecCHHHHHHHHHhh
Q 043295           36 KGEKVFVS---GAYGHLVGQ-YAKL--GGCYVVGSAGTNEKVAILKEKL   78 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~q-la~~--~g~~v~~~~~~~~~~~~~~~~~   78 (223)
                      .|+.++|+   +++|.+.++ +|+.  .|++|+.+++++++++.+.+++
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l   53 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL   53 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHH
Confidence            35677777   789987765 5553  6999999999999887775443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.94  E-value=0.29  Score=35.12  Aligned_cols=96  Identities=19%  Similarity=0.163  Sum_probs=62.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe-e-----------eecCCcccHHHHHHHhCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD-A-----------FNYKEETDLKATLKRYFP  101 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~-~-----------~~~~~~~~~~~~i~~~~~  101 (223)
                      .+.++|||. ||-|..+-.+++.-..+|.++.-+++=.+.+++-++... .           +.-... +..+.+++  .
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~-Da~~~l~~--~  147 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIG-DGFEFIKN--N  147 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEES-CHHHHHHH--C
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEC-hHHHHHhc--c
Confidence            677899999 888888888877544589999988888788773332210 0           000011 34444543  3


Q ss_pred             CCccEEE-cCCCh----------HHHHHHHHhhccCcEEEEEc
Q 043295          102 DGIDVYF-DNVGG----------EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       102 ~~~d~vi-d~~g~----------~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +.+|+|+ |+...          +-++.+.++|+++|.++.=+
T Consensus       148 ~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         148 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            4799885 44431          23677888999999987643

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.89  E-value=0.19  Score=33.52  Aligned_cols=94  Identities=16%  Similarity=0.119  Sum_probs=51.7

Q ss_pred             EEEEE--CchHHHHHHHHHHc-CCeEEEEecCH--HHHHHHHHhhCCCeeeecCCcccHHHH-------HHHhCCCCccE
Q 043295           39 KVFVS--GAYGHLVGQYAKLG-GCYVVGSAGTN--EKVAILKEKLGFDDAFNYKEETDLKAT-------LKRYFPDGIDV  106 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~-g~~v~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~-------i~~~~~~~~d~  106 (223)
                      +|.|.  |-+|+...+.+... ..+++++....  .....+. ..+.......+....+.+.       +.+.. .++|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~-~~vDi   80 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAH-RRGIRIYVPQQSIKKFEESGIPVAGTVEDLI-KTSDI   80 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHH-HTTCCEECCGGGHHHHHTTTCCCCCCHHHHH-HHCSE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhc-ccCcceeccCccceeccccceecCCchhhhh-hcCCE
Confidence            57788  89999999888766 45888876432  2323333 3332221111110000000       00000 14899


Q ss_pred             EEcCCCh-HHHHHHHHhhccCcEEEEEcc
Q 043295          107 YFDNVGG-EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       107 vid~~g~-~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      |+||+|. ...+.+-.++..+-+++..+.
T Consensus        81 ViecTG~f~~~e~a~~hl~~G~KvIi~~~  109 (178)
T d1b7go1          81 VVDTTPNGVGAQYKPIYLQLQRNAIFQGG  109 (178)
T ss_dssp             EEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred             EEECCCCcCCHHHHHHHHHcCCEEEEECC
Confidence            9999996 455666677777767776544

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=93.74  E-value=0.13  Score=34.91  Aligned_cols=86  Identities=10%  Similarity=-0.030  Sum_probs=57.3

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC-h
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-G  113 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-~  113 (223)
                      |.++.|+  |.+|...+++++..|.+|++.++......... ..+...   + +  ++.+.+.+     .|+|.-+.. .
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-~~~~~~---~-~--~l~~ll~~-----sD~v~l~~plt  114 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEA-SYQATF---H-D--SLDSLLSV-----SQFFSLNAPST  114 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHH-HHTCEE---C-S--SHHHHHHH-----CSEEEECCCCC
T ss_pred             ccceEEeecccchHHHHHHHHhhccccccccccccccchhh-cccccc---c-C--CHHHHHhh-----CCeEEecCCCC
Confidence            6899999  99999999999999999999886554333222 222211   1 1  34444444     677765553 2


Q ss_pred             -HH----HHHHHHhhccCcEEEEEcc
Q 043295          114 -EM----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       114 -~~----~~~~~~~l~~~G~~v~~g~  134 (223)
                       ++    -...+..|+++..+|-++-
T Consensus       115 ~~T~~li~~~~l~~mk~~a~lIN~sR  140 (191)
T d1gdha1         115 PETRYFFNKATIKSLPQGAIVVNTAR  140 (191)
T ss_dssp             TTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             chHhheecHHHhhCcCCccEEEecCC
Confidence             21    2467778888888887764

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=93.67  E-value=0.16  Score=36.63  Aligned_cols=35  Identities=17%  Similarity=0.370  Sum_probs=30.0

Q ss_pred             CCCEEEEE---C--chHHHHHHHHHHcCCeEEEEecCHHH
Q 043295           36 KGEKVFVS---G--AYGHLVGQYAKLGGCYVVGSAGTNEK   70 (223)
Q Consensus        36 ~g~~vlI~---g--~vG~~a~qla~~~g~~v~~~~~~~~~   70 (223)
                      +|+++||+   |  ++|.+.++.+...|++|+.+.+++..
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~   46 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPAL   46 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhh
Confidence            68899999   3  79999999999999999998876543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.66  E-value=0.05  Score=38.32  Aligned_cols=89  Identities=10%  Similarity=0.032  Sum_probs=58.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHhC-CCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRYF-PDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~-~~~~d~vid  109 (223)
                      .++++||=. .|.|..+..+++ .|.+|++++.|+.-++.+++.   .|...-+-..   +    +.... ++.+|+|+.
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~-~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~---d----~~~~~~~~~fD~i~~  107 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCP-KFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQ---D----ISNLNINRKFDLITC  107 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGG-GSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECC---C----GGGCCCSCCEEEEEE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHH-hCCccEeeccchhhhhhccccccccCccceeecc---c----hhhhcccccccccce
Confidence            456788888 778988887776 478999999999988777632   2332111111   1    12222 237999985


Q ss_pred             CCCh-------H----HHHHHHHhhccCcEEEE
Q 043295          110 NVGG-------E----MLEAAVANMNLFGRVAA  131 (223)
Q Consensus       110 ~~g~-------~----~~~~~~~~l~~~G~~v~  131 (223)
                      ..+.       +    .+..+.++|+|||.++.
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             eeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            3221       1    46677889999999874

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=93.66  E-value=0.23  Score=36.35  Aligned_cols=96  Identities=24%  Similarity=0.246  Sum_probs=63.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCC--Ceeeec-----CCcccHHHHHHHhCCCCcc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGF--DDAFNY-----KEETDLKATLKRYFPDGID  105 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~--~~~~~~-----~~~~~~~~~i~~~~~~~~d  105 (223)
                      ...++|||. +|.|..+-++++..+. +|.++.-+++-.+.+++-+..  ...++.     .-. +..+.+++ +++.+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~-Da~~~l~~-~~~~yD  153 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID-DARAYLER-TEERYD  153 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES-CHHHHHHH-CCCCEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEc-hHHHHhhh-cCCccc
Confidence            667899999 8889999898887654 899999998887877733210  001110     011 44555554 444799


Q ss_pred             EEE-cC---CCh----------HHHHHHHHhhccCcEEEEE
Q 043295          106 VYF-DN---VGG----------EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       106 ~vi-d~---~g~----------~~~~~~~~~l~~~G~~v~~  132 (223)
                      +|| |.   .+.          +-++.+.++|+++|.++.=
T Consensus       154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            885 43   221          2467788999999998753

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.62  E-value=0.11  Score=39.21  Aligned_cols=29  Identities=21%  Similarity=0.138  Sum_probs=25.4

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCCeEEEEe
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGCYVVGSA   65 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~~v~~~~   65 (223)
                      |.+|||+   |-+|..+++.+...|++|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            6789999   8899999988888999999986

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=93.53  E-value=0.099  Score=36.88  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGT   67 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~   67 (223)
                      -.|.+|+|.  |.||..+++++...|++|++++.+
T Consensus        29 l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          29 IEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecc
Confidence            578999999  999999999999999999998854

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=93.47  E-value=0.87  Score=32.58  Aligned_cols=98  Identities=13%  Similarity=0.123  Sum_probs=60.6

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEec---CHHHHHHHHHhhCCCeeeecCCcc--------------------
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAG---TNEKVAILKEKLGFDDAFNYKEET--------------------   90 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~--------------------   90 (223)
                      ++..|+..  |..|.+++..|+..|.+++.+..   ++.+.+.++ .+|+.-++...+..                    
T Consensus        59 ~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~-~~GA~v~~v~~~~~~~~a~~~~~~~~~~~~~~~~  137 (292)
T d2bhsa1          59 PGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMR-AYGAELILVTKEQGMEGARDLALEMANRGEGKLL  137 (292)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHH-HTTCEEEEECTTTHHHHHHHHHHHHHHHTSSEEC
T ss_pred             CCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHH-HhCCCcceeecccchHHHHHHHhhcccccccccc
Confidence            45555555  99999999999999996555553   566778888 88885432211110                    


Q ss_pred             --------------cHHHHHHHhCCCCccEEEcCCCh-HH---HHHHHHhhccCcEEEEEcc
Q 043295           91 --------------DLKATLKRYFPDGIDVYFDNVGG-EM---LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus        91 --------------~~~~~i~~~~~~~~d~vid~~g~-~~---~~~~~~~l~~~G~~v~~g~  134 (223)
                                    ....+|.+..++.+|.++-++|+ ..   +...+....+..+++.+..
T Consensus       138 ~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Vep  199 (292)
T d2bhsa1         138 DQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQP  199 (292)
T ss_dssp             CTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEE
T ss_pred             CCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEecc
Confidence                          01122333344468999988874 33   3345555667777766543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=93.44  E-value=0.23  Score=35.58  Aligned_cols=94  Identities=17%  Similarity=0.112  Sum_probs=64.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhh----CC---C--eeeecCCcccHHHHHHHhCCCC
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKL----GF---D--DAFNYKEETDLKATLKRYFPDG  103 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~----g~---~--~~~~~~~~~~~~~~i~~~~~~~  103 (223)
                      ...++|||. ||-|..+..+.+..+. +|.++.-.++-.+.+++-+    ++   .  .++. .   +....+++ ++..
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~-~---D~~~~l~~-~~~~  148 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV-D---DGFMHIAK-SENQ  148 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEE-S---CSHHHHHT-CCSC
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEe-c---hHHHHHhh-cCCC
Confidence            667899999 8889999999988765 8999998888878777322    22   1  1111 1   33344443 3347


Q ss_pred             ccEEE-cCCC----------hHHHHHHHHhhccCcEEEEEc
Q 043295          104 IDVYF-DNVG----------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       104 ~d~vi-d~~g----------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      +|+|+ |...          .+-++.+.++|+++|.++.=+
T Consensus       149 yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            99885 4332          135788889999999998643

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.37  E-value=0.32  Score=33.20  Aligned_cols=68  Identities=19%  Similarity=0.177  Sum_probs=42.6

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHhhCCCee-eecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEKLGFDDA-FNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      .+|||+   |.+|..+++.+...|.  .|+...+++++.+.+.  -+...+ .|..+.    +.+.+... ++|.|+.+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~--~~~~~~~~d~~~~----~~~~~~~~-~~d~vi~~a   76 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG--GEADVFIGDITDA----DSINPAFQ-GIDALVILT   76 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT--CCTTEEECCTTSH----HHHHHHHT-TCSEEEECC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhcc--CCcEEEEeeeccc----cccccccc-cceeeEEEE
Confidence            589999   8999999988888775  6777888887655443  122222 232222    22222222 488888876


Q ss_pred             C
Q 043295          112 G  112 (223)
Q Consensus       112 g  112 (223)
                      +
T Consensus        77 ~   77 (252)
T d2q46a1          77 S   77 (252)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=1.1  Score=33.24  Aligned_cols=99  Identities=15%  Similarity=0.178  Sum_probs=61.8

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEe---cCHHHHHHHHHhhCCCeeeecCC---------------------
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSA---GTNEKVAILKEKLGFDDAFNYKE---------------------   88 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~---~~~~~~~~~~~~~g~~~~~~~~~---------------------   88 (223)
                      ++++.|+..  |..|.+.+..|+.+|.+.+.+.   .++.|.+.++ .+|++.+.....                     
T Consensus        95 ~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~-~~GA~vv~v~~~~~~~~~~~~~~~~~~~~~~~~  173 (355)
T d1jbqa_          95 KPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLR-ALGAEIVRTPTNARFDSPESHVGVAWRLKNEIP  173 (355)
T ss_dssp             CTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHH-HTTCEEEECCC-------CCHHHHHHHHHHHST
T ss_pred             ccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHH-hcCCeEEEecccccchhhhhhhhHHHHHHHhcc
Confidence            345666555  9999999999999999766655   3456888888 899854421100                     


Q ss_pred             ---------cc--------cHHHHHHHhCCCCccEEEcCCCh-HH---HHHHHHhhccCcEEEEEcc
Q 043295           89 ---------ET--------DLKATLKRYFPDGIDVYFDNVGG-EM---LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus        89 ---------~~--------~~~~~i~~~~~~~~d~vid~~g~-~~---~~~~~~~l~~~G~~v~~g~  134 (223)
                               ..        ....++.+-.++.+|.++-++|+ ..   +-..+....++-+++.+..
T Consensus       174 ~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep  240 (355)
T d1jbqa_         174 NSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDP  240 (355)
T ss_dssp             TEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             ccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecc
Confidence                     00        01122322234468999999985 33   3344555667777776653

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.31  Score=35.15  Aligned_cols=95  Identities=18%  Similarity=0.176  Sum_probs=62.9

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhC----C---Cee-eecCCcccHHHHHHHhCCCCc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLG----F---DDA-FNYKEETDLKATLKRYFPDGI  104 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g----~---~~~-~~~~~~~~~~~~i~~~~~~~~  104 (223)
                      ...++|||. ||-|..+-.+.+..+. +|.++.-.++-.+.+++-+.    .   .++ +-..   +-.+.+++ +++.+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~---Da~~~l~~-~~~~y  152 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVG---DGFEFMKQ-NQDAF  152 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES---CHHHHHHT-CSSCE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEc---cHHHHHhc-CCCCC
Confidence            567899999 8889999999887765 89999988888887773221    0   111 1111   34445543 33479


Q ss_pred             cEEE-cCCCh----------HHHHHHHHhhccCcEEEEEc
Q 043295          105 DVYF-DNVGG----------EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       105 d~vi-d~~g~----------~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+|+ |....          +-++.+-++|+++|.++.=+
T Consensus       153 DvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         153 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            9886 44321          23667788999999988654

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.14  Score=37.06  Aligned_cols=74  Identities=14%  Similarity=0.133  Sum_probs=42.7

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEE---EEecCHHHHHHHH---HhhCC---C---eeeecCCcccHHHHHHHhCCCC
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVV---GSAGTNEKVAILK---EKLGF---D---DAFNYKEETDLKATLKRYFPDG  103 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~---~~~~~~~~~~~~~---~~~g~---~---~~~~~~~~~~~~~~i~~~~~~~  103 (223)
                      .|||+   +|+|.+.++.....|++|+   .+.++.++.+.+.   +++..   .   ...|-.+.++..+.+.+...+.
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g~   83 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEGR   83 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTSC
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccccc
Confidence            34666   8999999988888898644   4454443322222   13322   1   1234444424444444444458


Q ss_pred             ccEEEcCCC
Q 043295          104 IDVYFDNVG  112 (223)
Q Consensus       104 ~d~vid~~g  112 (223)
                      +|+++++.|
T Consensus        84 idilvnnag   92 (285)
T d1jtva_          84 VDVLVCNAG   92 (285)
T ss_dssp             CSEEEECCC
T ss_pred             hhhhhhccc
Confidence            999998775

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=93.20  E-value=0.67  Score=30.51  Aligned_cols=96  Identities=16%  Similarity=0.090  Sum_probs=55.5

Q ss_pred             EEEEE--CchHHHHHHHHHHcC-CeEEEEecCH--HHHHHHHHhhCCCeeeecCCc-ccHHHH-------HHHhCCCCcc
Q 043295           39 KVFVS--GAYGHLVGQYAKLGG-CYVVGSAGTN--EKVAILKEKLGFDDAFNYKEE-TDLKAT-------LKRYFPDGID  105 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g-~~v~~~~~~~--~~~~~~~~~~g~~~~~~~~~~-~~~~~~-------i~~~~~~~~d  105 (223)
                      +|.|.  |-+|+...+.+...+ .+++++....  .....+. .++.+......+. ..+.+.       ..+.. .++|
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~-~~vD   80 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMAL-KKGYDLYVAIPERVKLFEKAGIEVAGTVDDML-DEAD   80 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHH-HTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH-HTCS
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHH-hcCCceEecccccceeecccCcccCCChhHhh-cCCC
Confidence            57788  899998888776665 4777766322  3334444 4554432211111 000000       00010 1589


Q ss_pred             EEEcCCCh-HHHHHHHHhhccCcEEEEEcccc
Q 043295          106 VYFDNVGG-EMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       106 ~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      +|+||+|. ...+.+-..+..+.+++..+.+.
T Consensus        81 vViEcTG~f~~~~~~~~hl~~G~K~vi~~~~~  112 (171)
T d1cf2o1          81 IVIDCTPEGIGAKNLKMYKEKGIKAIFQGGEK  112 (171)
T ss_dssp             EEEECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred             EEEEccCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            99999996 55666777888888887776543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=93.15  E-value=0.3  Score=33.62  Aligned_cols=90  Identities=11%  Similarity=0.090  Sum_probs=57.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhC-CCCccEEEcCC-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYF-PDGIDVYFDNV-  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~~~~d~vid~~-  111 (223)
                      .++.+||=. +|.|..+..+++ .|.+|++++.+++..+.+++... +.+ ..... ++    .... ++.+|+|+..- 
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~-~g~~v~giD~s~~~i~~a~~~~~-~~~-~~~~~-~~----~~~~~~~~fD~I~~~~v   90 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQE-HFNDITCVEASEEAISHAQGRLK-DGI-TYIHS-RF----EDAQLPRRYDNIVLTHV   90 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTT-TCSCEEEEESCHHHHHHHHHHSC-SCE-EEEES-CG----GGCCCSSCEEEEEEESC
T ss_pred             CCCCcEEEEeCCCcHHHHHHHH-cCCeEEEEeCcHHHhhhhhcccc-ccc-ccccc-cc----cccccccccccccccce
Confidence            466788888 888998877764 57899999999999999984433 222 11111 11    1112 23799886422 


Q ss_pred             ----Ch--HHHHHHH-HhhccCcEEEEE
Q 043295          112 ----GG--EMLEAAV-ANMNLFGRVAAC  132 (223)
Q Consensus       112 ----g~--~~~~~~~-~~l~~~G~~v~~  132 (223)
                          ..  ..+.... ++|++||.++..
T Consensus        91 leh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          91 LEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             GGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             eEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence                21  2355565 578999998864

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.06  E-value=0.27  Score=34.65  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=27.4

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK   70 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~   70 (223)
                      ..||+   +++|.+.++.....|++|+.++++.++
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~   37 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEG   37 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            45777   789999999999999999999987554

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=92.97  E-value=0.13  Score=34.67  Aligned_cols=87  Identities=10%  Similarity=-0.066  Sum_probs=56.8

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC-
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-  112 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-  112 (223)
                      .+.++.|.  |.+|...++.++..|.+|+..++......... ..+....    .  ++.+.+.+     .|+|.-+.. 
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-~~~~~~~----~--~l~~~l~~-----sD~v~~~~pl  110 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-ELNLTWH----A--TREDMYPV-----CDVVTLNCPL  110 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-HHTCEEC----S--SHHHHGGG-----CSEEEECSCC
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeeccccccccc-ccccccc----C--CHHHHHHh-----ccchhhcccc
Confidence            46789999  99999999999999999999997654444444 4443221    1  33333322     677755443 


Q ss_pred             hH-----HHHHHHHhhccCcEEEEEcc
Q 043295          113 GE-----MLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 ~~-----~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .+     .-...+..|+++..+|-++-
T Consensus       111 t~~T~~li~~~~l~~mk~ga~lIN~aR  137 (188)
T d2naca1         111 HPETEHMINDETLKLFKRGAYIVNTAR  137 (188)
T ss_dssp             CTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             cccchhhhHHHHHHhCCCCCEEEecCc
Confidence            22     12466778888888877763

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=92.90  E-value=0.036  Score=41.20  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=30.9

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK   70 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~   70 (223)
                      ++++|||+   |-+|..+++.+...|++|++++++..+
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            67999999   789999999999999999999987653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.87  E-value=0.62  Score=33.89  Aligned_cols=98  Identities=17%  Similarity=0.134  Sum_probs=59.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCe-eeecCCcccHHHHHHHhC--CCCccEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDD-AFNYKEETDLKATLKRYF--PDGIDVY  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~-~~~~~~~~~~~~~i~~~~--~~~~d~v  107 (223)
                      .++.+||=. ++.|...+..++ .|++|+.++.++.-++.+++.   .|.+. -+..-.. +..+.+++..  +..||+|
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~-~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~-D~~~~l~~~~~~~~~fD~I  208 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAA-AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICE-DAMKFIQREERRGSTYDII  208 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECS-CHHHHHHHHHHHTCCBSEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHh-CCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeC-CHHHhHHHHhhcCCCCCEE
Confidence            568898877 777887777664 689999999999988888742   23321 1222222 4444444332  2379988


Q ss_pred             E-cCC-------C-----hHH----HHHHHHhhccCcEEEEEcc
Q 043295          108 F-DNV-------G-----GEM----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       108 i-d~~-------g-----~~~----~~~~~~~l~~~G~~v~~g~  134 (223)
                      | |.-       +     .++    +..+..+++++|.++.+..
T Consensus       209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            6 311       1     112    3345678889987666543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=92.77  E-value=0.069  Score=37.82  Aligned_cols=95  Identities=12%  Similarity=0.082  Sum_probs=59.1

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHh---hCCCeeeecCCcccHHHHHHHh-CCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEK---LGFDDAFNYKEETDLKATLKRY-FPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~-~~~~~d~vid  109 (223)
                      +++++||=. .|.|..+..+++.-..+|++++.|+..++.+++.   .+...-+..... +...  ... .++.+|+|+.
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~-D~~~--~~~~~~~~fD~V~~   99 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ-DSYG--RHMDLGKEFDVISS   99 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEES-CTTT--SCCCCSSCEEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEc-chhh--hcccccccceEEEE
Confidence            788999888 7889888888876556899999999988888733   222111111111 1000  001 1236999875


Q ss_pred             CCCh-------H----HHHHHHHhhccCcEEEEE
Q 043295          110 NVGG-------E----MLEAAVANMNLFGRVAAC  132 (223)
Q Consensus       110 ~~g~-------~----~~~~~~~~l~~~G~~v~~  132 (223)
                      .-.-       +    .+..+.++|+|||.++..
T Consensus       100 ~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_         100 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            3221       1    345566889999998764

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.2  Score=34.51  Aligned_cols=96  Identities=17%  Similarity=0.051  Sum_probs=63.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC---CeeeecCCcccHHHHHHHhCCCCccEEEc-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF---DDAFNYKEETDLKATLKRYFPDGIDVYFD-  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~i~~~~~~~~d~vid-  109 (223)
                      .++.+||=. +|.|..+.++++..+.+|++++.+++-++.+++.+..   ..+ ..... ++.+ + ....+.+|+|+. 
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~-~f~~~-d~~~-~-~~~~~~fD~I~~~  134 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVR-NYFCC-GLQD-F-TPEPDSYDVIWIQ  134 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEE-EEEEC-CGGG-C-CCCSSCEEEEEEE
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccc-ccccc-cccc-c-ccccccccccccc
Confidence            556788888 8999999998877778999999999998888843321   111 11111 1111 1 011237898875 


Q ss_pred             ----CCCh----HHHHHHHHhhccCcEEEEEcc
Q 043295          110 ----NVGG----EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       110 ----~~g~----~~~~~~~~~l~~~G~~v~~g~  134 (223)
                          .+..    ..+..+.+.|+++|.++....
T Consensus       135 ~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~  167 (222)
T d2ex4a1         135 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  167 (222)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence                2332    246777889999999988754

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.11  Score=31.89  Aligned_cols=74  Identities=15%  Similarity=0.185  Sum_probs=45.9

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe-eeecCCcccHHHHHHHhCCC-CccEE---Ec
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD-AFNYKEETDLKATLKRYFPD-GIDVY---FD  109 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~-~~d~v---id  109 (223)
                      +.+|.|.  |.+|++.++-|+.+|+++++.+.+++.-  +. .+.... +.++++.    +.+.++... ++|+|   ++
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P--A~-~va~~~i~~~~~d~----~~l~~~~~~~~~DviT~E~E   83 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP--AM-HVAHRSHVINMLDG----DALRRVVELEKPHYIVPEIE   83 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG--GG-GGSSEEEECCTTCH----HHHHHHHHHHCCSEEEECSS
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc--hh-hcCCeEEECCCCCH----HHHHHHHHhhCCceEEEEec
Confidence            4579999  9999999999999999999999765421  11 222222 2344443    223332222 46777   66


Q ss_pred             CCChHHHH
Q 043295          110 NVGGEMLE  117 (223)
Q Consensus       110 ~~g~~~~~  117 (223)
                      .+..+.++
T Consensus        84 nI~~~~L~   91 (111)
T d1kjqa2          84 AIATDMLI   91 (111)
T ss_dssp             CSCHHHHH
T ss_pred             CcCHHHHH
Confidence            66655544

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=92.62  E-value=0.25  Score=33.14  Aligned_cols=38  Identities=11%  Similarity=0.011  Sum_probs=31.6

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHH
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK   75 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~   75 (223)
                      ++|.|.  |.+|...++++...|++|+..+.+++.++...
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~   44 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGL   44 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhh
Confidence            467788  88998888888889999999999988766554

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.53  E-value=0.33  Score=28.66  Aligned_cols=48  Identities=15%  Similarity=0.106  Sum_probs=35.8

Q ss_pred             CCCEEEEE--CchHHHH-HHHHHHcCCeEEEEecCHH-HHHHHHHhhCCCeee
Q 043295           36 KGEKVFVS--GAYGHLV-GQYAKLGGCYVVGSAGTNE-KVAILKEKLGFDDAF   84 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a-~qla~~~g~~v~~~~~~~~-~~~~~~~~~g~~~~~   84 (223)
                      ..+++.+.  |++|..+ +++++..|++|.+.+.... ..+.+. +.|.....
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~-~~Gi~v~~   58 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLA-QAGAKIYI   58 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHH-HTTCEEEE
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHH-HCCCeEEE
Confidence            45677777  8999766 8999999999999997643 445666 67875433

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.21  E-value=0.62  Score=34.11  Aligned_cols=36  Identities=11%  Similarity=0.119  Sum_probs=28.1

Q ss_pred             CCEEEEE--C---chHHHHHHHHHHcCCeEEEEecCHHHHH
Q 043295           37 GEKVFVS--G---AYGHLVGQYAKLGGCYVVGSAGTNEKVA   72 (223)
Q Consensus        37 g~~vlI~--g---~vG~~a~qla~~~g~~v~~~~~~~~~~~   72 (223)
                      ++..||+  |   ++|.+.++.....|++|+.+.++.....
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~   42 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNI   42 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhh
Confidence            3556777  3   7999999999999999999887665433

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.96  E-value=0.41  Score=29.92  Aligned_cols=70  Identities=23%  Similarity=0.195  Sum_probs=42.0

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChHH
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEM  115 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~  115 (223)
                      +|.|+   |-+|++..+++...|.++++.......                  . .+         ..+|+++|++..+.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~------------------~-~~---------~~~DVvIDFS~p~~   53 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV------------------E-EL---------DSPDVVIDFSSPEA   53 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE------------------E-EC---------SCCSEEEECSCGGG
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH------------------H-Hh---------ccCCEEEEecCHHH
Confidence            47777   788888888888888877765421100                  0 00         12677777777665


Q ss_pred             HHHHHHhhccCcEEEEEcccc
Q 043295          116 LEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       116 ~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      ....++.+...+.=+.+|+++
T Consensus        54 ~~~~l~~~~~~~~p~ViGTTG   74 (128)
T d1vm6a3          54 LPKTVDLCKKYRAGLVLGTTA   74 (128)
T ss_dssp             HHHHHHHHHHHTCEEEECCCS
T ss_pred             HHHHHHHHHhcCCCEEEEcCC
Confidence            555555555555555555544

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=91.75  E-value=0.25  Score=35.89  Aligned_cols=69  Identities=17%  Similarity=0.289  Sum_probs=41.2

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEec-----CHHHHHHHHHhhCCCeee--ecCCcccHHHHHHHhCCC-CccEE
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAG-----TNEKVAILKEKLGFDDAF--NYKEETDLKATLKRYFPD-GIDVY  107 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~-----~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~i~~~~~~-~~d~v  107 (223)
                      +|||+   |.+|..+++.+...|++|+++++     ..++...+. ..+--..+  |-.+.    +.+.+...+ .+|+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~-~~~~~~~i~~Di~~~----~~l~~~~~~~~~d~V   76 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS-SLGNFEFVHGDIRNK----NDVTRLITKYMPDSC   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH-TTCCCEEEECCTTCH----HHHHHHHHHHCCSEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh-ccCCcEEEEcccCCH----HHHHHHHHhcCCceE
Confidence            68999   88999998888888999999862     112233333 33221222  22222    223333333 68999


Q ss_pred             EcCCC
Q 043295          108 FDNVG  112 (223)
Q Consensus       108 id~~g  112 (223)
                      |.+.+
T Consensus        77 ih~aa   81 (338)
T d1orra_          77 FHLAG   81 (338)
T ss_dssp             EECCC
T ss_pred             Eeecc
Confidence            99875

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=91.74  E-value=0.28  Score=32.39  Aligned_cols=97  Identities=20%  Similarity=0.172  Sum_probs=58.3

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecC---HHHHHHHHHhh----CC-CeeeecCCcccH-----------HHHHH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGT---NEKVAILKEKL----GF-DDAFNYKEETDL-----------KATLK   97 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~---~~~~~~~~~~~----g~-~~~~~~~~~~~~-----------~~~i~   97 (223)
                      +|.|.  |-+|+++...+...+.+|+++-..   .+...++- ++    |. +.-+...+. .+           .....
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLl-kyDS~hG~~~~~i~~~~~-~l~ing~~I~~~~~~~p~   79 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMF-KYDSTHGMFKGEVKAEDG-ALVVDGKKITVFNEMKPE   79 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHH-HCCTTTCCCSSCEEEETT-EEEETTEEEEEECCSSGG
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHH-hcccccCCcCCeEEEeCC-EEEECCEEEEEEecCChH
Confidence            46788  999999998888778888887642   34455554 32    21 000000000 00           00011


Q ss_pred             HhCC-C-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEccccc
Q 043295           98 RYFP-D-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus        98 ~~~~-~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      ++.. + ++|+|+||+|. ...+.+...+..+.+-|.++.|..
T Consensus        80 ~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~  122 (169)
T d1dssg1          80 NIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSA  122 (169)
T ss_dssp             GCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCS
T ss_pred             HCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCcc
Confidence            1111 2 79999999996 566777888888887788876654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=91.58  E-value=0.27  Score=35.28  Aligned_cols=93  Identities=18%  Similarity=0.187  Sum_probs=62.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc--CCeEEEEecCHHHHHHHHHhh---CCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG--GCYVVGSAGTNEKVAILKEKL---GFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~--g~~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      .++.+||=. .|.|..+..+++..  +.+|++++.++.-.+.+++..   +....+-..   +.. .+  ..++.+|+|+
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~---d~~-~~--~~~~~fD~v~   99 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEG---DAT-EI--ELNDKYDIAI   99 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEES---CTT-TC--CCSSCEEEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccc---ccc-cc--cccCCceEEE
Confidence            566788777 78899999999875  569999999999888777332   222112111   111 11  1123699997


Q ss_pred             cCC-----Ch--HHHHHHHHhhccCcEEEEEc
Q 043295          109 DNV-----GG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       109 d~~-----g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                      ..-     ..  ..+..+.+.|+|||.++...
T Consensus       100 ~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1         100 CHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             EESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            533     22  35788999999999998765

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.58  E-value=0.23  Score=33.01  Aligned_cols=40  Identities=18%  Similarity=0.135  Sum_probs=33.1

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL   78 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~   78 (223)
                      +|.|.   |++|.+.++.....|++|+..+|++++.+.+.+++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i   44 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEY   44 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            46666   78999999999999999999999999877665443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.47  E-value=1.3  Score=29.90  Aligned_cols=97  Identities=10%  Similarity=0.046  Sum_probs=60.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .++..||=. .|.|..++.+|+.. +..+++++.++..+..+.+   +.|.+.+--...  +...-...+..+.+|.|+-
T Consensus        28 ~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~--Da~~l~~~~~~~~~d~v~i  105 (204)
T d2fcaa1          28 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNI--DADTLTDVFEPGEVKRVYL  105 (204)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECC--CGGGHHHHCCTTSCCEEEE
T ss_pred             CCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhccc--chhhhhcccCchhhhcccc
Confidence            334444444 79999999999987 6799999999887765542   456654422221  1111122232336776642


Q ss_pred             CC-C--------------hHHHHHHHHhhccCcEEEEEc
Q 043295          110 NV-G--------------GEMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       110 ~~-g--------------~~~~~~~~~~l~~~G~~v~~g  133 (223)
                      .. .              .+.+....+.|+|||.+....
T Consensus       106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            21 1              235778889999999998764

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=91.47  E-value=0.18  Score=36.01  Aligned_cols=36  Identities=14%  Similarity=0.113  Sum_probs=26.8

Q ss_pred             EEEE---CchHHHHHHHHHHcCCeEEEEecC-HHHHHHHH
Q 043295           40 VFVS---GAYGHLVGQYAKLGGCYVVGSAGT-NEKVAILK   75 (223)
Q Consensus        40 vlI~---g~vG~~a~qla~~~g~~v~~~~~~-~~~~~~~~   75 (223)
                      +||+   +++|.+.++.....|++|+.++++ +++.+.+.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~   44 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS   44 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence            4666   689999999999999999887754 44444443

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.23  E-value=0.17  Score=37.12  Aligned_cols=30  Identities=17%  Similarity=0.244  Sum_probs=26.3

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecC
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGT   67 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~   67 (223)
                      +.+||+   |-+|..++..+...|++|+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            578999   889999998888889999999974

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.079  Score=30.17  Aligned_cols=32  Identities=25%  Similarity=0.212  Sum_probs=27.9

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCCeEEEEecCHH
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNE   69 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~   69 (223)
                      ++|.|.  |.+|+|.++-|+.+|.+++..+..++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            468888  99999999999999999999986543

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=91.14  E-value=0.9  Score=29.77  Aligned_cols=98  Identities=17%  Similarity=0.105  Sum_probs=56.1

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCH--HHHHHHHHhh----CC-CeeeecCCc------cc----HHHHHHHh
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTN--EKVAILKEKL----GF-DDAFNYKEE------TD----LKATLKRY   99 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~--~~~~~~~~~~----g~-~~~~~~~~~------~~----~~~~i~~~   99 (223)
                      +|.|.  |-+|+.+.+.+...+.+|+++-...  +...++. ++    |- ...+...+.      ..    ......+.
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl-~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~i   80 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLL-KYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEI   80 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHH-HCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGC
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchhhhhhee-ecccccCccccccccccceeEecceeEEEEecCChHHC
Confidence            57788  9999999998887788888877432  2333333 22    11 000000000      00    00001122


Q ss_pred             CCC--CccEEEcCCCh-HHHHHHHHhhccCcEEEEEccccc
Q 043295          100 FPD--GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       100 ~~~--~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      ...  |+|+|+||+|. ...+.+...+..+.+-|.++.|..
T Consensus        81 ~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~k  121 (168)
T d2g82a1          81 PWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAK  121 (168)
T ss_dssp             CTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             cccccCCceeEeccccccchHHhhhhhccccceeeeccccc
Confidence            222  79999999996 455667778887776677766543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=91.04  E-value=0.057  Score=35.39  Aligned_cols=90  Identities=16%  Similarity=0.069  Sum_probs=53.3

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCe-eeecCCcccHHHHHHHhCCCCccEEEcCCChHH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDD-AFNYKEETDLKATLKRYFPDGIDVYFDNVGGEM  115 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~  115 (223)
                      +|+|.  |.+|.+..-.....|.+|..+++++++.+... ..+.+. ........+..+.+.     .+|++|-++-...
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~D~iii~vka~~   75 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVN-LVETDGSIFNESLTANDPDFLA-----TSDLLLVTLKAWQ   75 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEE-EECTTSCEEEEEEEESCHHHHH-----TCSEEEECSCGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhc-cccCCccccccccccchhhhhc-----ccceEEEeecccc
Confidence            68888  99999888888888999999998876543332 222211 111000001122221     4999999998643


Q ss_pred             HHH----HHHhhccCcEEEEEcc
Q 043295          116 LEA----AVANMNLFGRVAACGV  134 (223)
Q Consensus       116 ~~~----~~~~l~~~G~~v~~g~  134 (223)
                      ...    ....+.++..++.+.+
T Consensus        76 ~~~~~~~l~~~~~~~~~Iv~~qN   98 (167)
T d1ks9a2          76 VSDAVKSLASTLPVTTPILLIHN   98 (167)
T ss_dssp             HHHHHHHHHTTSCTTSCEEEECS
T ss_pred             hHHHHHhhccccCcccEEeeccC
Confidence            333    3345556666766543

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=91.01  E-value=1.2  Score=28.55  Aligned_cols=93  Identities=18%  Similarity=0.104  Sum_probs=58.1

Q ss_pred             CEEEEE---CchHHHHHHHHHHc--CCeEEEEecC--HHHH-HHHHHhhCCCeeeecCCcccHH----------------
Q 043295           38 EKVFVS---GAYGHLVGQYAKLG--GCYVVGSAGT--NEKV-AILKEKLGFDDAFNYKEETDLK----------------   93 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~--g~~v~~~~~~--~~~~-~~~~~~~g~~~~~~~~~~~~~~----------------   93 (223)
                      ++|.|.   |.+|..+.++.+..  ..+|++.+-+  -+++ +.++ ++.+..+.-.++. ...                
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~-ef~Pk~v~i~d~~-~~~~l~~~~~~~~~~v~~g   80 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAK-RTNAKRAVIADPS-LYNDLKEALAGSSVEAAAG   80 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHH-HTTCSEEEESCGG-GHHHHHHHTTTCSSEEEES
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHH-hhccccceeccHH-HHHHHHHHhhhcccccccC
Confidence            678888   88999999988876  4577776633  3333 3444 7777666444332 111                


Q ss_pred             -HHHHHhCCCCccEEEcCCCh-HHHHHHHHhhccCcEEEEE
Q 043295           94 -ATLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus        94 -~~i~~~~~~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~  132 (223)
                       +.+.+.....+|+++.++.| ..+...+..++.+-++.+.
T Consensus        81 ~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaLA  121 (150)
T d1r0ka2          81 ADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALA  121 (150)
T ss_dssp             HHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEEC
T ss_pred             ccchheecccccceeeeecCchhHHHHHHHHHhcCCEEEEe
Confidence             11111222257888888655 6788888888888776553

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=90.97  E-value=0.22  Score=35.33  Aligned_cols=33  Identities=18%  Similarity=0.137  Sum_probs=30.0

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGT   67 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~   67 (223)
                      -+|.+|+|.  |.||..+++.+...|++|++++.+
T Consensus        34 l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~   68 (255)
T d1bgva1          34 LVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGP   68 (255)
T ss_dssp             STTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEET
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            578899999  999999999999999999998753

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=90.94  E-value=1.2  Score=28.86  Aligned_cols=133  Identities=12%  Similarity=0.071  Sum_probs=75.0

Q ss_pred             EEEEE--CchHHH-HHHHHHHc-CCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCCh-
Q 043295           39 KVFVS--GAYGHL-VGQYAKLG-GCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGG-  113 (223)
Q Consensus        39 ~vlI~--g~vG~~-a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~-  113 (223)
                      +|.|.  |.+|.. .....+.. +.++++.+.++++.+.+.++++...+++     ++.+.+.    ..+|.|+-|+.. 
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~ll~----~~iD~V~I~tp~~   73 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCT-----DYRDVLQ----YGVDAVMIHAATD   73 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCS-----STTGGGG----GCCSEEEECSCGG
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccc-----cHHHhcc----cccceeccccccc
Confidence            46666  777743 44555544 5577777788887777765788755442     1222121    248999988886 


Q ss_pred             HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHh-hcce-EEeeeccCccchHHHHHHHHHHHHHcCCCCcc
Q 043295          114 EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVY-KRIK-IQGFLSTDHFDLHQDFISMTCDALRAGKIQPL  190 (223)
Q Consensus       114 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~  190 (223)
                      .+++.+..++..| .-|.+..|...+...   ...+..... ++.. ..|+.  +    +...+.++.+....|.+...
T Consensus        74 ~H~~~~~~al~~g-k~V~~EKP~~~~~~e---~~~l~~~a~~~~~~~~vg~~--r----~~~~~~~~~~~~~~G~ig~~  142 (167)
T d1xeaa1          74 VHSTLAAFFLHLG-IPTFVDKPLAASAQE---CENLYELAEKHHQPLYVGFN--G----FDAMVQDWLQVAAAGKLPTH  142 (167)
T ss_dssp             GHHHHHHHHHHTT-CCEEEESCSCSSHHH---HHHHHHHHHHTTCCEEEECG--T----HHHHHHHHHHHHHHTCCCHH
T ss_pred             ccccccccccccc-cccccCCCCcCCHHH---HHHHHHHHHHcCCEEEEEeC--c----CCHHHHHHHHHhhcCCCCcE
Confidence            5677777888765 456665543321100   001112211 2222 23321  2    34557788888889988644

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.93  E-value=0.43  Score=27.69  Aligned_cols=45  Identities=29%  Similarity=0.287  Sum_probs=33.4

Q ss_pred             EEEEE--CchHHHH-HHHHHHcCCeEEEEecCH-HHHHHHHHhhCCCeee
Q 043295           39 KVFVS--GAYGHLV-GQYAKLGGCYVVGSAGTN-EKVAILKEKLGFDDAF   84 (223)
Q Consensus        39 ~vlI~--g~vG~~a-~qla~~~g~~v~~~~~~~-~~~~~~~~~~g~~~~~   84 (223)
                      +|-+.  |++|..+ +++++..|+.|.+.+..+ ...+.++ ++|+....
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~-~~Gi~i~~   51 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLR-KLGIPIFV   51 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHH-HTTCCEES
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHH-HCCCeEEe
Confidence            45455  8889755 688999999999999776 3456677 88975443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=90.86  E-value=0.56  Score=31.43  Aligned_cols=80  Identities=14%  Similarity=0.108  Sum_probs=53.8

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC--C----eeeecC--CcccHHHHHHHhCCCCccEEE
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF--D----DAFNYK--EETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~--~----~~~~~~--~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      +|.|.  |..|.+.+.++...|.+|...+++++..+.+. +-+-  .    ..++.+  -..++.+.+.     +.|+++
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~-~~~~n~~yl~~~~l~~~i~~t~~l~~a~~-----~ad~ii   82 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVN-EKRENVLFLKGVQLASNITFTSDVEKAYN-----GAEIIL   82 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHH-HHTBCTTTSTTCBCCTTEEEESCHHHHHT-----TCSCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHh-hcccccccccccccccccccchhhhhccC-----CCCEEE
Confidence            58888  99999999888888889999999998888776 3321  1    111110  0013444442     389999


Q ss_pred             cCCChHHHHHHHHhhc
Q 043295          109 DNVGGEMLEAAVANMN  124 (223)
Q Consensus       109 d~~g~~~~~~~~~~l~  124 (223)
                      -++.+..+...++.+.
T Consensus        83 iavPs~~~~~~~~~~~   98 (189)
T d1n1ea2          83 FVIPTQFLRGFFEKSG   98 (189)
T ss_dssp             ECSCHHHHHHHHHHHC
T ss_pred             EcCcHHHHHHHHHHHH
Confidence            9999877666665443

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=90.85  E-value=2  Score=30.89  Aligned_cols=48  Identities=21%  Similarity=0.244  Sum_probs=34.5

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEe---cCHHHHHHHHHhhCCCee
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSA---GTNEKVAILKEKLGFDDA   83 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~---~~~~~~~~~~~~~g~~~~   83 (223)
                      .+++.|+..  |.-|.+++..|+..|.+.+.+.   .++.|...++ .+|+..+
T Consensus        59 ~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~-~~GA~vv  111 (310)
T d1y7la1          59 TKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLC-GLGVNLV  111 (310)
T ss_dssp             CTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHH-HTTCEEE
T ss_pred             CCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHH-HhCCceE
Confidence            455666666  9999999999999999655444   3345777777 7887544

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=90.80  E-value=0.23  Score=36.90  Aligned_cols=31  Identities=16%  Similarity=0.279  Sum_probs=24.8

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCH
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN   68 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~   68 (223)
                      +.|||+   |-+|..++..+...|.+|+++++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            578899   7788888888888899999999743

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.78  E-value=0.43  Score=31.52  Aligned_cols=50  Identities=16%  Similarity=0.163  Sum_probs=36.7

Q ss_pred             HHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh
Q 043295           28 VGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL   78 (223)
Q Consensus        28 ~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~   78 (223)
                      .+|.+..  -++++|+|.  |+++.+++..+...| +|+...|+.++.+.+.+.+
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~   60 (177)
T d1nvta1           7 MALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEI   60 (177)
T ss_dssp             HHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHH
T ss_pred             HHHHHhCCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHH
Confidence            3454444  688999999  999988876665555 9999999988877665333

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.76  E-value=0.17  Score=36.63  Aligned_cols=32  Identities=19%  Similarity=0.164  Sum_probs=29.2

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecC
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGT   67 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~   67 (223)
                      .|.+|+|.  |.||..+++.+...|++|++++.+
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~   68 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGES   68 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcc
Confidence            57899999  999999999999999999998843

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=90.44  E-value=0.57  Score=30.69  Aligned_cols=93  Identities=13%  Similarity=0.055  Sum_probs=62.8

Q ss_pred             hccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCccc
Q 043295           17 NGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETD   91 (223)
Q Consensus        17 a~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   91 (223)
                      .-+|++....+..|..+.  -.|++|+|.   ..+|.-+..+....|++|+.......                     +
T Consensus        15 ~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~---------------------~   73 (166)
T d1b0aa1          15 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTK---------------------N   73 (166)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCS---------------------C
T ss_pred             CCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccccc---------------------h
Confidence            345555555666666666  689999999   57999999999999999876542211                     2


Q ss_pred             HHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEcccc
Q 043295           92 LKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus        92 ~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      +.+.+++     .|+++-++|.+.+- --+.++++..++.+|...
T Consensus        74 l~~~~~~-----ADivI~a~G~p~~i-~~~~vk~g~vvIDvGi~~  112 (166)
T d1b0aa1          74 LRHHVEN-----ADLLIVAVGKPGFI-PGDWIKEGAIVIDVGINR  112 (166)
T ss_dssp             HHHHHHH-----CSEEEECSCCTTCB-CTTTSCTTCEEEECCCEE
T ss_pred             hHHHHhh-----hhHhhhhccCcccc-cccccCCCcEEEecCcee
Confidence            3333333     78888888864321 134678888888888653

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.35  E-value=0.6  Score=33.84  Aligned_cols=35  Identities=26%  Similarity=0.151  Sum_probs=28.0

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHH
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEK   70 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~   70 (223)
                      .++++||-. .|.|..+..+|+ .|+ +|+++..++.-
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~-~Ga~~V~aid~s~~~   70 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAK-AGAKKVLGVDQSEIL   70 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHH-TTCSEEEEEESSTHH
T ss_pred             CCcCEEEEECCCCCHHHHHHHH-cCCCEEEEEeCHHHH
Confidence            688999999 778888776666 576 89999988753

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.32  E-value=1.7  Score=29.18  Aligned_cols=80  Identities=21%  Similarity=0.127  Sum_probs=49.0

Q ss_pred             cchhhHHHHHHHHh----hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHH
Q 043295           21 TSGFTAYVGFYEIS----QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKA   94 (223)
Q Consensus        21 ~~~~ta~~~l~~~~----~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   94 (223)
                      ++.-.|...+..+.    -.|++||=. .|.|..++.+ ...|+ +|++++.++...+.+++......++..    ++  
T Consensus        29 T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a-~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~----D~--  101 (197)
T d1ne2a_          29 TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGS-YLLGAESVTAFDIDPDAIETAKRNCGGVNFMVA----DV--  101 (197)
T ss_dssp             CCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHH-HHTTBSEEEEEESCHHHHHHHHHHCTTSEEEEC----CG--
T ss_pred             CCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHH-HHcCCCcccccccCHHHHHHHHHccccccEEEE----eh--
Confidence            34444544444333    578999988 7778776654 44565 899999999988888843322233322    21  


Q ss_pred             HHHHhCCCCccEEEcC
Q 043295           95 TLKRYFPDGIDVYFDN  110 (223)
Q Consensus        95 ~i~~~~~~~~d~vid~  110 (223)
                        .+ .++.+|+|+-.
T Consensus       102 --~~-l~~~fD~Vi~N  114 (197)
T d1ne2a_         102 --SE-ISGKYDTWIMN  114 (197)
T ss_dssp             --GG-CCCCEEEEEEC
T ss_pred             --hh-cCCcceEEEeC
Confidence              11 23479988854

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=90.03  E-value=0.53  Score=34.42  Aligned_cols=28  Identities=21%  Similarity=0.169  Sum_probs=23.7

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEec
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAG   66 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~   66 (223)
                      +|||+   |-+|...+..+...|.+|+++++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            58999   88888888888888999999874

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.97  E-value=1.1  Score=32.33  Aligned_cols=97  Identities=15%  Similarity=0.156  Sum_probs=62.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCC-eeeec-----CCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFD-DAFNY-----KEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~-~~~~~-----~~~~~~~~~i~~~~~~~~d~  106 (223)
                      ...++|||. ||-|..+-.+++..+. +|.++.-.++-.+.+++-+... ..++.     .-. +-.+.+++ +++.+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~-Da~~~l~~-~~~~yDv  165 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIA-NGAEYVRK-FKNEFDV  165 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES-CHHHHGGG-CSSCEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhh-hHHHHHhc-CCCCCCE
Confidence            566899999 8889888888887765 8999999988888777322110 00100     011 34444543 3347998


Q ss_pred             EE-cCCCh-----------HHHHHHHHhhccCcEEEEEc
Q 043295          107 YF-DNVGG-----------EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       107 vi-d~~g~-----------~~~~~~~~~l~~~G~~v~~g  133 (223)
                      |+ |+...           +-++.+.++|+++|.++.=.
T Consensus       166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            86 43221           24667888999999998653

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=89.88  E-value=0.74  Score=34.58  Aligned_cols=59  Identities=19%  Similarity=0.098  Sum_probs=41.4

Q ss_pred             hHHHHHHHHh---hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEec---CHHHHHHHHHhhCCCeee
Q 043295           25 TAYVGFYEIS---QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAG---TNEKVAILKEKLGFDDAF   84 (223)
Q Consensus        25 ta~~~l~~~~---~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~---~~~~~~~~~~~~g~~~~~   84 (223)
                      .|++.+....   +++.+|+-.  |..|.+++..|+..|.+++.+..   ++.|.+.++ .+|++.+.
T Consensus       129 ~A~~~i~~A~~~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ir-a~GAeVi~  195 (382)
T d1wkva1         129 PAVEIISRLSRRVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPR-LLGAQVIV  195 (382)
T ss_dssp             HHHHHHHHHTTTSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHH-HTTCEEEE
T ss_pred             HHHHHHHHHHhccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEeecccccccccccc-ccCcceee
Confidence            3555555443   566665544  89999999999999997666653   456778888 89986543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=89.81  E-value=0.64  Score=32.56  Aligned_cols=94  Identities=15%  Similarity=0.141  Sum_probs=58.7

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .+..+||=. +|.|..+..+++.. +.++++++. ++..+.+++   +.|....+..... ++.    +..++++|+|+-
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~-D~~----~~~~~~~D~v~~  152 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEG-DFF----EPLPRKADAIIL  152 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEEC-CTT----SCCSSCEEEEEE
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccc-cch----hhcccchhheee
Confidence            666788888 99999999999987 568888885 444444432   3343221221111 211    111236898863


Q ss_pred             CC-----ChH----HHHHHHHhhccCcEEEEEcc
Q 043295          110 NV-----GGE----MLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       110 ~~-----g~~----~~~~~~~~l~~~G~~v~~g~  134 (223)
                      ..     ..+    .+..+.+.|+|||+++....
T Consensus       153 ~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         153 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            22     222    36788899999999998754

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=89.80  E-value=1.6  Score=28.00  Aligned_cols=94  Identities=13%  Similarity=0.045  Sum_probs=57.8

Q ss_pred             CEEEEE---CchHHHHHHHHHHc--CCeEEEEec--CHHHH-HHHHHhhCCCeeeecCCc--ccHH--------------
Q 043295           38 EKVFVS---GAYGHLVGQYAKLG--GCYVVGSAG--TNEKV-AILKEKLGFDDAFNYKEE--TDLK--------------   93 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~--g~~v~~~~~--~~~~~-~~~~~~~g~~~~~~~~~~--~~~~--------------   93 (223)
                      ++|.|.   |.+|..+..+.+..  ..+|++.+-  +-+.+ +.++ +|.+..++-.++.  ..+.              
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~-~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~   80 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCL-EFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLS   80 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHH-HHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHH-HHhhcccccccHHHHHHHHHHhhhhcccccccc
Confidence            357777   88888888888876  347776653  33333 3334 7777666544332  0111              


Q ss_pred             --HHHHHhCCC-CccEEEcCCCh-HHHHHHHHhhccCcEEEEE
Q 043295           94 --ATLKRYFPD-GIDVYFDNVGG-EMLEAAVANMNLFGRVAAC  132 (223)
Q Consensus        94 --~~i~~~~~~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~  132 (223)
                        +.+.+.... .+|+|+.++.| ..+...+..++.+-++.+.
T Consensus        81 g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLA  123 (151)
T d1q0qa2          81 GQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLA  123 (151)
T ss_dssp             SHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEEC
T ss_pred             ChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEEE
Confidence              112222222 68999988876 6788888888888776543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.27  E-value=0.81  Score=33.24  Aligned_cols=88  Identities=19%  Similarity=0.148  Sum_probs=50.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHH---hhCCCe-e--eecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKE---KLGFDD-A--FNYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~---~~g~~~-~--~~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      .+|++||-. .|.|..+..+|+ .|+ +|++++.++. ...+++   ..+... +  +..+-. ++     ....+.+|+
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~-~~-----~~~~~~~D~  103 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAK-AGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVE-EV-----ELPVEKVDI  103 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHH-TTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTT-TC-----CCSSSCEEE
T ss_pred             CCcCEEEEEecCCcHHHHHHHH-hCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHH-Hc-----ccccceeEE
Confidence            689999988 778987776665 676 8999997764 222221   334422 2  211111 11     011126898


Q ss_pred             EEc-CCC----h----H-HHHHHHHhhccCcEEE
Q 043295          107 YFD-NVG----G----E-MLEAAVANMNLFGRVA  130 (223)
Q Consensus       107 vid-~~g----~----~-~~~~~~~~l~~~G~~v  130 (223)
                      |+. ..+    .    + .+...-++|+|+|.++
T Consensus       104 ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         104 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            864 222    1    1 2344457999999885

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.24  E-value=0.11  Score=36.60  Aligned_cols=42  Identities=12%  Similarity=-0.141  Sum_probs=30.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHH
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE   76 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~   76 (223)
                      .+|.+||=. .|.|.....+++..+.+|++++-++..++.+++
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~   92 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEK   92 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHH
Confidence            456677666 666766655555544589999999998888874

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.23  E-value=0.5  Score=31.74  Aligned_cols=38  Identities=32%  Similarity=0.237  Sum_probs=32.5

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHH
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK   75 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~   75 (223)
                      ++|.|.  |.+|...++++...|++|+..+.+++.++.++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~   44 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSK   44 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHH
Confidence            478888  99999999999999999999999988765554

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=89.21  E-value=0.38  Score=29.44  Aligned_cols=43  Identities=19%  Similarity=0.094  Sum_probs=34.2

Q ss_pred             HHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCH
Q 043295           26 AYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTN   68 (223)
Q Consensus        26 a~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~   68 (223)
                      +...+.... .++++|+|.  |.+|.-.++.++..|.+|..+.+++
T Consensus        10 ~~~~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          10 HATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             HHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             HHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            333344444 788999999  8999999999999999999998764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.19  E-value=0.43  Score=29.27  Aligned_cols=44  Identities=16%  Similarity=0.076  Sum_probs=33.7

Q ss_pred             hhHHHHHHHHhhCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCH
Q 043295           24 FTAYVGFYEISQKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTN   68 (223)
Q Consensus        24 ~ta~~~l~~~~~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~   68 (223)
                      .|+..+| +..+..++++|.  |.+|+-.++..+.+|.+|..+.+++
T Consensus        10 ~~s~~~l-~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          10 VDSTGAL-DFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             EEHHHHT-SCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EchhHhh-CcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            3455444 222555888888  9999999999999999999998663

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.82  E-value=0.96  Score=32.01  Aligned_cols=95  Identities=14%  Similarity=0.008  Sum_probs=58.6

Q ss_pred             EEEEE-CchHHHHHHHHHHc-------CCeEEEEecCHHHHHHHHHhhCC----C-eeeecCCcccH---HHHHHHhCCC
Q 043295           39 KVFVS-GAYGHLVGQYAKLG-------GCYVVGSAGTNEKVAILKEKLGF----D-DAFNYKEETDL---KATLKRYFPD  102 (223)
Q Consensus        39 ~vlI~-g~vG~~a~qla~~~-------g~~v~~~~~~~~~~~~~~~~~g~----~-~~~~~~~~~~~---~~~i~~~~~~  102 (223)
                      +||=. .|.|.....+++..       +.++++++.++..++.+++.+.-    . ..++.... .+   ..........
T Consensus        43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  121 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKE-TSSEYQSRMLEKKEL  121 (280)
T ss_dssp             EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECS-CHHHHHHHHTTSSSC
T ss_pred             eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhh-hhhhhcchhcccCCC
Confidence            67777 78888877776642       33688999999888888743321    1 11232222 22   2222222223


Q ss_pred             -CccEEEcCCC-----h--HHHHHHHHhhccCcEEEEEcc
Q 043295          103 -GIDVYFDNVG-----G--EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       103 -~~d~vid~~g-----~--~~~~~~~~~l~~~G~~v~~g~  134 (223)
                       .||+|+-.-.     .  ..+..+.++|+|+|.++....
T Consensus       122 ~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         122 QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             CCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence             8999875322     2  368888999999998877643

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=88.70  E-value=1.5  Score=28.75  Aligned_cols=98  Identities=17%  Similarity=0.125  Sum_probs=56.9

Q ss_pred             EEEEE--CchHHHHHHHHHHc-CCeEEEEec---CHHHHHHHHHhh----CC-C-ee-ee-----cCCcc-cH--HHHHH
Q 043295           39 KVFVS--GAYGHLVGQYAKLG-GCYVVGSAG---TNEKVAILKEKL----GF-D-DA-FN-----YKEET-DL--KATLK   97 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~-g~~v~~~~~---~~~~~~~~~~~~----g~-~-~~-~~-----~~~~~-~~--~~~i~   97 (223)
                      +|.|.  |-+|+++...+... ..+++++-.   +.+...++. ++    |. . .+ ++     .+... .+  .....
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLl-kyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p~   81 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMF-QYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   81 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHH-HCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHH-hhccccCCcCCeEEEECCEEEECCEEEEEEECCChh
Confidence            57788  99999998776654 468888754   234455554 32    11 0 00 00     00000 00  00112


Q ss_pred             HhCC-C-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEccccc
Q 043295           98 RYFP-D-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus        98 ~~~~-~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      ++.. + ++|+|+||+|. .....+...+..|.+-|.++.|..
T Consensus        82 ~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~  124 (169)
T d1u8fo1          82 KIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSA  124 (169)
T ss_dssp             GCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCS
T ss_pred             hCCccccCCCEEEEecceeccHHHHHHHHhcCCceEeeccccc
Confidence            2222 3 89999999996 456667778888887787776654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.61  E-value=0.32  Score=32.49  Aligned_cols=81  Identities=23%  Similarity=0.173  Sum_probs=55.5

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC-
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-  112 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-  112 (223)
                      .|++|.|+  |.+|...+++++.+|.+|++.++++.+        +.....    . ++.+.+++     .|+|+-+.. 
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~--------~~~~~~----~-~l~ell~~-----sDiv~~~~pl  102 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE--------GPWRFT----N-SLEEALRE-----ARAAVCALPL  102 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC--------SSSCCB----S-CSHHHHTT-----CSEEEECCCC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccccc--------cceeee----e-chhhhhhc-----cchhhccccc
Confidence            46789999  999999999999999999999876432        111111    1 33333322     788876554 


Q ss_pred             h-HH----HHHHHHhhccCcEEEEEcc
Q 043295          113 G-EM----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 ~-~~----~~~~~~~l~~~G~~v~~g~  134 (223)
                      . ++    -...+..|+++..+|.++-
T Consensus       103 ~~~t~~li~~~~l~~mk~~ailIN~~R  129 (181)
T d1qp8a1         103 NKHTRGLVKYQHLALMAEDAVFVNVGR  129 (181)
T ss_dssp             STTTTTCBCHHHHTTSCTTCEEEECSC
T ss_pred             ccccccccccceeeeccccceEEeccc
Confidence            2 21    2467788899999988763

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.45  E-value=0.34  Score=29.92  Aligned_cols=33  Identities=12%  Similarity=-0.105  Sum_probs=27.7

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGT   67 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~   67 (223)
                      +..++++|.  |.+|.-.++..+.+|.+|..+.++
T Consensus        18 ~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          18 YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            445677777  999999999999999999988754

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.29  E-value=0.25  Score=34.25  Aligned_cols=33  Identities=21%  Similarity=0.150  Sum_probs=28.8

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK   70 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~   70 (223)
                      +++||+   +++|.+.++.....|++|+.+++++++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            678888   799999999999999999999987654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=88.22  E-value=0.38  Score=29.45  Aligned_cols=34  Identities=18%  Similarity=-0.027  Sum_probs=29.3

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCH
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTN   68 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~   68 (223)
                      +..++|+|.  |.+|.-+++..+..|.+|..+.+++
T Consensus        20 ~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          20 KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCCCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            446889999  8899999999999999999998664

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.20  E-value=2.5  Score=28.18  Aligned_cols=101  Identities=21%  Similarity=0.171  Sum_probs=62.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhh---CCCe-eeecCCcccHHHHHHHhCCCCccEE-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKL---GFDD-AFNYKEETDLKATLKRYFPDGIDVY-  107 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~---g~~~-~~~~~~~~~~~~~i~~~~~~~~d~v-  107 (223)
                      ++++.++=. .|.|..+-.+++.. +.+|++++.+++.++.+++.+   +... .+..+-. ++...+.....+.+|.| 
T Consensus        22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~-~~~~~~~~~~~~~vdgIl  100 (192)
T d1m6ya2          22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYR-EADFLLKTLGIEKVDGIL  100 (192)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGG-GHHHHHHHTTCSCEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHh-hHHHHHHHcCCCCcceee
Confidence            667765433 56677777777765 679999999999888887433   3211 2222222 44444444433478866 


Q ss_pred             EcCCC-h--------------HHHHHHHHhhccCcEEEEEcccc
Q 043295          108 FDNVG-G--------------EMLEAAVANMNLFGRVAACGVIS  136 (223)
Q Consensus       108 id~~g-~--------------~~~~~~~~~l~~~G~~v~~g~~~  136 (223)
                      +|.-- +              ..+..+++.|+++|+++.+.+..
T Consensus       101 ~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2         101 MDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             EECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             eccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            45321 1              13556778899999998887654

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.17  E-value=0.64  Score=32.32  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=28.1

Q ss_pred             hCCCEEEEE--CchHHHHHHHH-HHcCCeEEEEecC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYA-KLGGCYVVGSAGT   67 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla-~~~g~~v~~~~~~   67 (223)
                      -++.+|.|.  |.||..+++.+ +..|++|++++.+
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~   64 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDS   64 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEET
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecC
Confidence            678899999  99999999877 5679999988843

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.95  E-value=0.093  Score=36.54  Aligned_cols=73  Identities=16%  Similarity=0.168  Sum_probs=43.9

Q ss_pred             hCCCEEEEE---CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHhhCCCe-eeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS---GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEKLGFDD-AFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~---g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      -.+++|||+   |.+|...++.+...|.  +|++++|++.+...-. .-.... +.|..+.    +.+.+... ++|+++
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~-~~~i~~~~~D~~~~----~~~~~~~~-~~d~vi   85 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKL----DDYASAFQ-GHDVGF   85 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGG----GGGGGGGS-SCSEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc-cceeeeeeeccccc----cccccccc-cccccc
Confidence            466899999   8899988888777785  8999998654322111 111111 1233221    12222222 599999


Q ss_pred             cCCCh
Q 043295          109 DNVGG  113 (223)
Q Consensus       109 d~~g~  113 (223)
                      .|+|.
T Consensus        86 ~~~~~   90 (232)
T d2bkaa1          86 CCLGT   90 (232)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            99874

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.89  E-value=0.41  Score=33.88  Aligned_cols=44  Identities=9%  Similarity=-0.245  Sum_probs=32.4

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhh
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL   78 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~   78 (223)
                      .+|.++|=. .|.|......+...+.+|++++-++.-++.+++.+
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~   97 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWL   97 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHH
Confidence            567888877 56675554455555669999999999989887444

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.89  E-value=1.4  Score=32.15  Aligned_cols=88  Identities=25%  Similarity=0.189  Sum_probs=49.5

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHH---hhCCCe-e--eecCCcccHHHHHHHhCCCCccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKE---KLGFDD-A--FNYKEETDLKATLKRYFPDGIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~---~~g~~~-~--~~~~~~~~~~~~i~~~~~~~~d~  106 (223)
                      .+|++||-. .|.|..+..+|+ .|+ +|+++..++ ..+.+++   ..+... +  +..+-. ++     ...++.+|+
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~-~l-----~~~~~~~D~  108 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAK-HGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLE-DV-----HLPFPKVDI  108 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHH-TCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTT-TS-----CCSSSCEEE
T ss_pred             CCcCEEEEeCCCCCHHHHHHHH-hCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehh-hc-----cCcccceeE
Confidence            689999988 778887765554 676 899999775 2233321   344422 2  211111 11     111237998


Q ss_pred             EEcCC-C----h----HH-HHHHHHhhccCcEEE
Q 043295          107 YFDNV-G----G----EM-LEAAVANMNLFGRVA  130 (223)
Q Consensus       107 vid~~-g----~----~~-~~~~~~~l~~~G~~v  130 (223)
                      |+... +    .    .. +...-++|+|+|.++
T Consensus       109 i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            86421 1    1    12 333346899999885

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=87.88  E-value=1.2  Score=28.99  Aligned_cols=98  Identities=19%  Similarity=0.108  Sum_probs=55.0

Q ss_pred             EEEEE--CchHHHHHHHHHHcC-CeEEEEecCH--HHHHHHHHhh----CC--Cee--------eecCCcccH--HHHHH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGG-CYVVGSAGTN--EKVAILKEKL----GF--DDA--------FNYKEETDL--KATLK   97 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g-~~v~~~~~~~--~~~~~~~~~~----g~--~~~--------~~~~~~~~~--~~~i~   97 (223)
                      +|.|.  |-+|+.+.+.+.... .+|+++-...  +.+.++- ++    |.  ..+        ++...- .+  .....
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl-~yDSvhG~~~~~v~~~~~~l~ing~~I-~i~~~~~p~   80 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYML-KYDSTHGRFDGTVEVKDGHLIVNGKKI-RVTAERDPA   80 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHH-HCCTTTCSCSSCEEEETTEEEETTEEE-EEECCSSGG
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhh-eecCCCCCcCCeEEEeCCEEEECCEEE-EEEeCCChH
Confidence            56777  899999988777653 5888777443  2333333 21    11  001        000000 00  00011


Q ss_pred             HhCC-C-CccEEEcCCCh-HHHHHHHHhhccCcEEEEEcccccc
Q 043295           98 RYFP-D-GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISEC  138 (223)
Q Consensus        98 ~~~~-~-~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~  138 (223)
                      ++.. . ++|+|+||+|. .+.+.+...+..|.+-|.++.|...
T Consensus        81 ~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~d  124 (166)
T d1gado1          81 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD  124 (166)
T ss_dssp             GGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSS
T ss_pred             HCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeeccccc
Confidence            1111 2 79999999996 4566777788888777777766543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=87.73  E-value=0.24  Score=33.62  Aligned_cols=83  Identities=27%  Similarity=0.132  Sum_probs=54.8

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC-
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG-  112 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g-  112 (223)
                      .+++|.|.  |.+|...+++++..|.+|++.++...+        +....+.+.   ++.+.+.+     .|++.-++. 
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~--------~~~~~~~~~---~l~~l~~~-----~D~v~~~~pl  107 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK--------GDHPDFDYV---SLEDLFKQ-----SDVIDLHVPG  107 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS--------SCCTTCEEC---CHHHHHHH-----CSEEEECCCC
T ss_pred             cceeeeeeecccccccccccccccceeeeccCCccch--------hhhcchhHH---HHHHHHHh-----cccceeeecc
Confidence            35789999  999999999999999999999875432        111111111   34333333     677765543 


Q ss_pred             hH-H----HHHHHHhhccCcEEEEEcc
Q 043295          113 GE-M----LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       113 ~~-~----~~~~~~~l~~~G~~v~~g~  134 (223)
                      .+ +    -...+..|+++..+|-++-
T Consensus       108 t~~T~~li~~~~l~~mk~~a~lIN~aR  134 (199)
T d1dxya1         108 IEQNTHIINEAAFNLMKPGAIVINTAR  134 (199)
T ss_dssp             CGGGTTSBCHHHHHHSCTTEEEEECSC
T ss_pred             cccccccccHHHhhccCCceEEEeccc
Confidence            22 1    2467788888888888764

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=87.66  E-value=1.5  Score=30.72  Aligned_cols=94  Identities=16%  Similarity=0.119  Sum_probs=58.6

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEEc
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFD  109 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid  109 (223)
                      .+..+||=. |+.|..+..+++.. +.++++.+. ++-.+.+++   +.|....+..... ++.    ...+.++|+++-
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~-d~~----~~~p~~~D~v~~  153 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEG-DFF----KPLPVTADVVLL  153 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEEC-CTT----SCCSCCEEEEEE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeee-ecc----ccccccchhhhc
Confidence            556788777 99999999999988 679999885 554444432   3343221111111 111    111236888763


Q ss_pred             C-----CCh----HHHHHHHHhhccCcEEEEEcc
Q 043295          110 N-----VGG----EMLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       110 ~-----~g~----~~~~~~~~~l~~~G~~v~~g~  134 (223)
                      .     ...    ..+..+.+.|+|||+++.+..
T Consensus       154 ~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         154 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            2     121    146788899999999998764

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.63  E-value=1.6  Score=31.16  Aligned_cols=97  Identities=14%  Similarity=0.157  Sum_probs=60.3

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcC-CeEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEE-
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGG-CYVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYF-  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g-~~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi-  108 (223)
                      ++|++||=. .+-|.-..+++.... .+|++.+.++.+...+++   .+|...+.-.........   ....+.||.|+ 
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~---~~~~~~fd~IL~  177 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ---WCGEQQFDRILL  177 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH---HHTTCCEEEEEE
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccch---hcccccccEEEE
Confidence            889998888 666777777776553 589999999988766642   467754332222101111   12223688774 


Q ss_pred             c--CCChHH--------------------------HHHHHHhhccCcEEEEEcc
Q 043295          109 D--NVGGEM--------------------------LEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 d--~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~  134 (223)
                      |  |+|.-+                          +..++.++++||++|....
T Consensus       178 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC  231 (284)
T d1sqga2         178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  231 (284)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             eccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence            5  555321                          1245667889998887654

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.57  E-value=0.69  Score=30.40  Aligned_cols=92  Identities=12%  Similarity=0.037  Sum_probs=62.6

Q ss_pred             hccccchhhHHHHHHHHh--hCCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCccc
Q 043295           17 NGAGTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETD   91 (223)
Q Consensus        17 a~l~~~~~ta~~~l~~~~--~~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   91 (223)
                      +-+|++....+..|.++.  -.|++|.|.   ..+|.-++.+....|++|+........                     
T Consensus        17 ~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~---------------------   75 (170)
T d1a4ia1          17 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAH---------------------   75 (170)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS---------------------
T ss_pred             CCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEeccccc---------------------
Confidence            445666666677777766  689999998   679999999999999999986633221                     


Q ss_pred             HHHHHHHhCCCCccEEEcCCChHHHHHHHHhhccCcEEEEEccc
Q 043295           92 LKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVI  135 (223)
Q Consensus        92 ~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~  135 (223)
                      +.+.++     ..|+++-++|...+ .--+.++++..++.+|..
T Consensus        76 l~~~~~-----~aDivi~a~G~~~~-i~~~~vk~g~iviDvgi~  113 (170)
T d1a4ia1          76 LDEEVN-----KGDILVVATGQPEM-VKGEWIKPGAIVIDCGIN  113 (170)
T ss_dssp             HHHHHT-----TCSEEEECCCCTTC-BCGGGSCTTCEEEECCCB
T ss_pred             HHHHHh-----hccchhhccccccc-cccccccCCCeEeccCcc
Confidence            111121     27777877776432 123467788888888754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.12  E-value=1.1  Score=27.71  Aligned_cols=63  Identities=13%  Similarity=0.123  Sum_probs=46.5

Q ss_pred             hhHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecC
Q 043295           24 FTAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYK   87 (223)
Q Consensus        24 ~ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~   87 (223)
                      .+--..|.... ..-+.+++.   -..-..++++++..|. ++++.+.+++..+.++ ++|++.++++.
T Consensus        52 ~~~~~~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~-~~G~d~vi~p~  119 (132)
T d1lssa_          52 CTKIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFE-RLGVDVVVSPE  119 (132)
T ss_dssp             TTSHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHH-HTTCSEEECHH
T ss_pred             ccchhhhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHH-HCCCCEEECHH
Confidence            34445566665 666666665   3345677888999988 7888888888888888 99999998754

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=86.70  E-value=2.9  Score=27.32  Aligned_cols=137  Identities=9%  Similarity=-0.053  Sum_probs=74.8

Q ss_pred             EEEEE--CchHHH-HHHHHHHc-C-CeEEEEe-cCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCC
Q 043295           39 KVFVS--GAYGHL-VGQYAKLG-G-CYVVGSA-GTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVG  112 (223)
Q Consensus        39 ~vlI~--g~vG~~-a~qla~~~-g-~~v~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g  112 (223)
                      ++.|.  |.+|.- .....+.. + .++++++ +++++.+.+.+.++...+++     ++.+.+..   ..+|+|+-|+.
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~-----~~~ell~~---~~id~v~I~tp   76 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFD-----SYEELLES---GLVDAVDLTLP   76 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEES-----CHHHHHHS---SCCSEEEECCC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceee-----eeeccccc---cccceeecccc
Confidence            56677  777754 35555554 3 3788765 44556665554777655542     34443332   25999988887


Q ss_pred             h-HHHHHHHHhhccCcEEEEEcccccccccccCCCCchHHHHhh-cce-EEeeeccCccchHHHHHHHHHHHHHcCCCCc
Q 043295          113 G-EMLEAAVANMNLFGRVAACGVISECADASKRAVPNMIDIVYK-RIK-IQGFLSTDHFDLHQDFISMTCDALRAGKIQP  189 (223)
Q Consensus       113 ~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~  189 (223)
                      . .++..+..++..| .-|.+..|...+...   ...+.....+ +.. ..++...  ...+...+.++.+++.+|.+..
T Consensus        77 ~~~h~~~~~~al~~g-k~V~~EKPl~~~~~e---~~~l~~~~~~~~~~~~v~~~~R--~~~~~~~~~~~~~~i~~G~ig~  150 (181)
T d1zh8a1          77 VELNLPFIEKALRKG-VHVICEKPISTDVET---GKKVVELSEKSEKTVYIAENFR--ENSYQKEFEDFYQVVAEGKPND  150 (181)
T ss_dssp             GGGHHHHHHHHHHTT-CEEEEESSSSSSHHH---HHHHHHHHHHCSSCEEEECGGG--CCHHHHHHHHHHHHHHSCCCCS
T ss_pred             ccccccccccccccc-hhhhcCCCCcCCHHH---HHHHHHHHHHhCCeEEEEeecc--ccccCHHHHHHHHHHHCCCCcc
Confidence            6 4677777777665 666666543321100   0011122212 222 2232221  1234567888899999998753

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=86.49  E-value=0.41  Score=33.38  Aligned_cols=32  Identities=13%  Similarity=0.056  Sum_probs=28.1

Q ss_pred             CCCEEEEE--CchHHHHHHHHHHcCCeEEEEecC
Q 043295           36 KGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGT   67 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~   67 (223)
                      ..++|+|.  |+.|++++..++..|.+|+...++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~   36 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERS   36 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            46789999  999999999999999999999864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=86.46  E-value=1.2  Score=27.34  Aligned_cols=34  Identities=18%  Similarity=0.019  Sum_probs=29.7

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCH
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTN   68 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~   68 (223)
                      .++++|+|.  |.+|+-+++.++..|.+|..+.+++
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            567899999  9999999999999999999988653

>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.32  E-value=0.58  Score=31.04  Aligned_cols=31  Identities=16%  Similarity=0.131  Sum_probs=26.4

Q ss_pred             hCCCEEEEE------CchHHHHHHHHHHcCCeEEEEe
Q 043295           35 QKGEKVFVS------GAYGHLVGQYAKLGGCYVVGSA   65 (223)
Q Consensus        35 ~~g~~vlI~------g~vG~~a~qla~~~g~~v~~~~   65 (223)
                      .+|++|||.      |+.-.+++++++..|++|+++.
T Consensus       116 ~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~vvg~~  152 (178)
T d1zn7a1         116 EPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECV  152 (178)
T ss_dssp             CTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCeEEEehhhhhhchHHHHHHHHHHHCCCEEEEEE
Confidence            368899998      8888999999999999877654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.24  E-value=0.62  Score=28.30  Aligned_cols=34  Identities=21%  Similarity=0.123  Sum_probs=29.6

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCH
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTN   68 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~   68 (223)
                      +..++++|.  |.+|.-+++.+..+|.+|..+.+++
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             hcCCeEEEECCCccceeeeeeecccccEEEEEEecc
Confidence            455788888  9999999999999999999998664

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=86.13  E-value=0.49  Score=31.46  Aligned_cols=34  Identities=18%  Similarity=0.088  Sum_probs=30.3

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCH
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTN   68 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~   68 (223)
                      ..+++|+|.  |+.|+.|+..+...|.+|+.....+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            556899999  9999999999999999999998664

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.11  E-value=0.33  Score=32.28  Aligned_cols=33  Identities=9%  Similarity=-0.011  Sum_probs=28.1

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCC-eEEEEecCHH
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGC-YVVGSAGTNE   69 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~-~v~~~~~~~~   69 (223)
                      +++|+|.  |+.|+.++..++..|. .|+...+++.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            5789999  9999999999999999 4888886654

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=85.99  E-value=1.2  Score=29.86  Aligned_cols=86  Identities=13%  Similarity=0.022  Sum_probs=56.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC--
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV--  111 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~--  111 (223)
                      .++.+||=. .|.|..+..+     .++++++.|+...+.++ +-+...+ ..+-. ++     ...++.+|+|+..-  
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~-~~~~~~~-~~d~~-~l-----~~~~~~fD~I~~~~~l  101 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIAR-KRGVFVL-KGTAE-NL-----PLKDESFDFALMVTTI  101 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHH-HTTCEEE-ECBTT-BC-----CSCTTCEEEEEEESCG
T ss_pred             CCCCeEEEECCCCccccccc-----ceEEEEeCChhhccccc-ccccccc-ccccc-cc-----cccccccccccccccc
Confidence            566678777 7778766655     35789999999999988 5554322 22111 11     01123699987533  


Q ss_pred             ---Ch--HHHHHHHHhhccCcEEEEEc
Q 043295          112 ---GG--EMLEAAVANMNLFGRVAACG  133 (223)
Q Consensus       112 ---g~--~~~~~~~~~l~~~G~~v~~g  133 (223)
                         ..  ..+....+.|++||.++...
T Consensus       102 ~h~~d~~~~l~~~~~~L~pgG~l~i~~  128 (208)
T d1vlma_         102 CFVDDPERALKEAYRILKKGGYLIVGI  128 (208)
T ss_dssp             GGSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccchhhhhhcCCCCceEEEEe
Confidence               22  25778889999999988765

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=85.90  E-value=0.39  Score=33.60  Aligned_cols=32  Identities=16%  Similarity=0.217  Sum_probs=26.8

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE   69 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~   69 (223)
                      +.|||+   +++|.+.++.....|++|+.+++++.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            356777   78999999999999999999997643

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=85.87  E-value=2.7  Score=29.51  Aligned_cols=33  Identities=15%  Similarity=0.057  Sum_probs=27.7

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCH
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTN   68 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~   68 (223)
                      +..+|||+   |.+|...+..+...|.+|++++|+.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            34679999   8899999988888899999998764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.73  E-value=0.67  Score=32.53  Aligned_cols=29  Identities=17%  Similarity=0.261  Sum_probs=24.8

Q ss_pred             EEEEE---CchHHHHHHHHHHcCCeEEEEecC
Q 043295           39 KVFVS---GAYGHLVGQYAKLGGCYVVGSAGT   67 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~g~~v~~~~~~   67 (223)
                      +|||+   |.+|..++..++..|++|++++++
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~   34 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQ   34 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeech
Confidence            58899   788888888888889999999865

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.62  E-value=4  Score=29.39  Aligned_cols=96  Identities=17%  Similarity=0.163  Sum_probs=61.8

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      ++|++||=. .+-|.-+.+++...+-  .+++.+.++.+...+++   .+|...+...... ...  + ....+.||.|+
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d-~~~--~-~~~~~~fD~IL  190 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSS-SLH--I-GELNVEFDKIL  190 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSC-GGG--G-GGGCCCEEEEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccc-ccc--c-ccccccccEEE
Confidence            899998777 6778888888887653  79999999988766542   5677655444332 111  1 11223688774


Q ss_pred             -c--CCChH--------------------------HHHHHHHhhccCcEEEEEcc
Q 043295          109 -D--NVGGE--------------------------MLEAAVANMNLFGRVAACGV  134 (223)
Q Consensus       109 -d--~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~  134 (223)
                       |  |+|..                          .+..++.++++||++|....
T Consensus       191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC  245 (313)
T d1ixka_         191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  245 (313)
T ss_dssp             EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence             4  44421                          12356778899998887654

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=85.32  E-value=5.1  Score=28.91  Aligned_cols=106  Identities=19%  Similarity=0.161  Sum_probs=64.4

Q ss_pred             HHHHHHHHh--hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEe---cCHHHHHHHHHhhCCCeeeecCCccc-------
Q 043295           26 AYVGFYEIS--QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSA---GTNEKVAILKEKLGFDDAFNYKEETD-------   91 (223)
Q Consensus        26 a~~~l~~~~--~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~-------   91 (223)
                      |++.+....  .+...|+..  |..|.+++..|+..|.+++.+.   .++.+.+.++ .+|++-++...+.+.       
T Consensus        62 a~~~i~~~~~~~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~-~~Ga~vi~~~~~~~~~~~~~~~  140 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVR-GFGGEVLLHGANFDEAKAKAIE  140 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHH-HHSCEEECCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeeeecccchhHHHHHHhhccccccceeeccccchhHHHHHHH-hcCCEEEEcCcccccchhhhhh
Confidence            555555544  444555555  9999999999999999766665   3445777888 888854432211100       


Q ss_pred             ------------------------HHHHHHHhCCCCccEEEcCCCh-HH---HHHHHHhhccCcEEEEEc
Q 043295           92 ------------------------LKATLKRYFPDGIDVYFDNVGG-EM---LEAAVANMNLFGRVAACG  133 (223)
Q Consensus        92 ------------------------~~~~i~~~~~~~~d~vid~~g~-~~---~~~~~~~l~~~G~~v~~g  133 (223)
                                              ....+.+.. +.+|.+|-++|+ ..   +...+..+.++-+++.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~-~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve  209 (331)
T d1tdja1         141 LSQQQGFTWVPPFDHPMVIAGQGTLALELLQQD-AHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVE  209 (331)
T ss_dssp             HHHHHCCEECCSSCCHHHHHHHHHHHHHHHHHC-TTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             hhhcCCCccccccCChHHhhhhhhHHHHHHHhc-CCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEec
Confidence                                    111122221 258999988874 33   345555667777877664

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=85.25  E-value=3  Score=26.27  Aligned_cols=93  Identities=11%  Similarity=-0.033  Sum_probs=54.9

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHH-HHHHH--hhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKV-AILKE--KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~-~~~~~--~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      .++++|.  |.+|..+++.....|.+|+.+...+++. +.+.+  ..|.. ++ +.+. .-.+.+++..-+..|.++-++
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~-vi-~Gd~-~d~~~L~~a~i~~a~~vi~~~   79 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNAD-VI-PGDS-NDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCE-EE-ESCT-TSHHHHHHHTTTTCSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcE-EE-EccC-cchHHHHHhccccCCEEEEcc
Confidence            4567777  8999999999888999999998776542 23331  22332 23 2222 223344444333688898888


Q ss_pred             ChHH--HH--HHHHhhccCcEEEEE
Q 043295          112 GGEM--LE--AAVANMNLFGRVAAC  132 (223)
Q Consensus       112 g~~~--~~--~~~~~l~~~G~~v~~  132 (223)
                      +.+.  +.  ...+.+.+..+++.-
T Consensus        80 ~~d~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          80 DNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             ccHHHHHHHHHHHHHhCCCCceEEE
Confidence            7642  22  233345566555544

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.19  E-value=2.4  Score=26.82  Aligned_cols=37  Identities=19%  Similarity=0.149  Sum_probs=27.4

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK   75 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~   75 (223)
                      +|-|.  |.+|...+.-.+..|.+|++..+++.+....+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~   40 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIER   40 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHh
Confidence            46666  88998888888888999988876665544443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=85.10  E-value=3.4  Score=26.75  Aligned_cols=40  Identities=23%  Similarity=0.047  Sum_probs=32.2

Q ss_pred             EEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCC
Q 043295           40 VFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGF   80 (223)
Q Consensus        40 vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~   80 (223)
                      |-|.  |.+|...+.-....|++|++.++++++.+.+. +.+.
T Consensus         4 IGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~-~~~~   45 (178)
T d1pgja2           4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFM-KANA   45 (178)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH-HHTT
T ss_pred             EEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-HcCC
Confidence            5555  88888888777788999999999999988887 4443

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.06  E-value=0.27  Score=35.69  Aligned_cols=29  Identities=14%  Similarity=0.265  Sum_probs=25.0

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEec
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAG   66 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~   66 (223)
                      ++|||+   |.+|..++......|.+|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            679999   78899888888788999999874

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.92  E-value=5.2  Score=28.75  Aligned_cols=96  Identities=13%  Similarity=0.103  Sum_probs=58.4

Q ss_pred             CEEEEE--CchHHHHHHHHHHcCCeEEEEe---cCHHHHHHHHHhhCCCeeeecCCc-----------------------
Q 043295           38 EKVFVS--GAYGHLVGQYAKLGGCYVVGSA---GTNEKVAILKEKLGFDDAFNYKEE-----------------------   89 (223)
Q Consensus        38 ~~vlI~--g~vG~~a~qla~~~g~~v~~~~---~~~~~~~~~~~~~g~~~~~~~~~~-----------------------   89 (223)
                      ..|+..  |..|.+.+..|+..|.+.+.+.   .++.|.+.++ .+|++.+......                       
T Consensus        66 ~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~-~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (320)
T d1z7wa1          66 SVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILL-AFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQ  144 (320)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHH-HTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECC
T ss_pred             ceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhh-ccCcceEEeeccccccccchhHHHHHHhCCCceecc
Confidence            344444  9999999999999999655555   3456788888 8888544221100                       


Q ss_pred             ------------ccHHHHHHHhCCCCccEEEcCCCh-HHH---HHHHHhhccCcEEEEEcc
Q 043295           90 ------------TDLKATLKRYFPDGIDVYFDNVGG-EML---EAAVANMNLFGRVAACGV  134 (223)
Q Consensus        90 ------------~~~~~~i~~~~~~~~d~vid~~g~-~~~---~~~~~~l~~~G~~v~~g~  134 (223)
                                  ......+.+...+.+|.++-++|+ ..+   ...+....+.-+++.+..
T Consensus       145 ~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igve~  205 (320)
T d1z7wa1         145 QFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEP  205 (320)
T ss_dssp             TTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             cccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeecccc
Confidence                        012223333444468999988885 333   344455566667765543

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=84.55  E-value=0.24  Score=33.47  Aligned_cols=28  Identities=7%  Similarity=-0.179  Sum_probs=22.2

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCe-EEEE
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCY-VVGS   64 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~-v~~~   64 (223)
                      ++.+++.  |++|++++|+++.+|+. |+++
T Consensus       163 ~~~~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         163 DQLVKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             GGGEEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             ccEEEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            5566666  99999999999999995 5443

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.42  E-value=3.3  Score=29.94  Aligned_cols=29  Identities=21%  Similarity=0.106  Sum_probs=23.9

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEec
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAG   66 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~   66 (223)
                      +.|||+   |-+|..++..+...|.+|+++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            568888   88888888888888999999863

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=84.36  E-value=0.53  Score=33.30  Aligned_cols=31  Identities=23%  Similarity=0.185  Sum_probs=27.2

Q ss_pred             CCEEEEE--CchHHHHHHHHHHcCCeEEEEecC
Q 043295           37 GEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGT   67 (223)
Q Consensus        37 g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~   67 (223)
                      +++|+|.  |.-|++++..++..|.+|.....+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            5789999  889999999999999999998854

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.00  E-value=3.4  Score=27.14  Aligned_cols=100  Identities=12%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             HHHHHh---hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHH---hhCCCeeeecCCcccHHHHHHHhC
Q 043295           29 GFYEIS---QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKE---KLGFDDAFNYKEETDLKATLKRYF  100 (223)
Q Consensus        29 ~l~~~~---~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~i~~~~  100 (223)
                      +++.+-   ..|.+||=. ++.|.+.++.+. .|+ +|+.+..+++..+.+++   .++...-+..... +..+.+.+..
T Consensus        31 alFn~l~~~~~~~~vLDlfaGsG~~g~ea~s-rGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~-D~~~~l~~~~  108 (182)
T d2fhpa1          31 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKM-DANRALEQFY  108 (182)
T ss_dssp             HHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-CHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEcccccccccceeee-cchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccc-cchhhhhhhc
Confidence            444443   467777766 777877776555 677 89999999887777653   2454321111122 4444454432


Q ss_pred             -CC-CccEEEcCC--Ch----HHHHHHHH--hhccCcEEE
Q 043295          101 -PD-GIDVYFDNV--GG----EMLEAAVA--NMNLFGRVA  130 (223)
Q Consensus       101 -~~-~~d~vid~~--g~----~~~~~~~~--~l~~~G~~v  130 (223)
                       .+ .||+||--.  +.    ..+.....  +|+++|.++
T Consensus       109 ~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi  148 (182)
T d2fhpa1         109 EEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIV  148 (182)
T ss_dssp             HTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEE
Confidence             23 799996432  11    23444433  478888665

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=83.99  E-value=0.71  Score=30.40  Aligned_cols=35  Identities=14%  Similarity=0.247  Sum_probs=26.6

Q ss_pred             CccEEEcCCCh-HHHHHHHHhhccCcEEEEEccccc
Q 043295          103 GIDVYFDNVGG-EMLEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       103 ~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      ++|+|+||+|. .+.+.+...+..+.+-|.++.+..
T Consensus        88 ~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~~  123 (171)
T d3cmco1          88 GVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAK  123 (171)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             CCcEEEEecCccCCHHHHHHHHhCCCceEEEecccc
Confidence            79999999996 456677778888876677766544

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.97  E-value=1.4  Score=32.25  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=28.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE   69 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~   69 (223)
                      .+.+|||+   |-+|..++..+...|.+|+++++...
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            46789999   88999998888889999999975443

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.84  E-value=1.7  Score=30.25  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=27.3

Q ss_pred             CCCEEEEE--CchHHHHHHHHH-HcCCeEEEEecC
Q 043295           36 KGEKVFVS--GAYGHLVGQYAK-LGGCYVVGSAGT   67 (223)
Q Consensus        36 ~g~~vlI~--g~vG~~a~qla~-~~g~~v~~~~~~   67 (223)
                      +|.+|+|.  |.||..+++++. ..|++|++++.+
T Consensus        31 ~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          31 KGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCcceeecccc
Confidence            68899999  999999998764 579999998754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=83.51  E-value=3.6  Score=25.80  Aligned_cols=75  Identities=17%  Similarity=0.067  Sum_probs=45.9

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCC--CccEEEcCCC
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPD--GIDVYFDNVG  112 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~--~~d~vid~~g  112 (223)
                      ++|.|.   |.+|...+...+..|++|.+.++++....... ..+++.++.........+.+.+..+.  .=.+++|+.+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD~~S   88 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESI-LANADVVIVSVPINLTLETIERLKPYLTENMLLADLTS   88 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHH-HTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECCS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchh-hhhccccccccchhhheeeeecccccccCCceEEEecc
Confidence            567777   56666666666677999999998776544444 44666665444432444444444332  1237788876


Q ss_pred             h
Q 043295          113 G  113 (223)
Q Consensus       113 ~  113 (223)
                      .
T Consensus        89 v   89 (152)
T d2pv7a2          89 V   89 (152)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=83.51  E-value=1.7  Score=26.48  Aligned_cols=64  Identities=19%  Similarity=0.312  Sum_probs=43.1

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCC-CccEEEcCC
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPD-GIDVYFDNV  111 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~-~~d~vid~~  111 (223)
                      +++++++|.  |.+|.-++..++..|.+|..+.+++.=       ++  ..+   +. ...+.+++.... |+++..++.
T Consensus        28 ~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~-------l~--~~~---~~-~~~~~~~~~l~~~GV~i~~~~~   94 (121)
T d1d7ya2          28 RPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL-------MS--RAA---PA-TLADFVARYHAAQGVDLRFERS   94 (121)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST-------TT--TTS---CH-HHHHHHHHHHHTTTCEEEESCC
T ss_pred             hcCCeEEEECcchhHHHHHHHhhcccceEEEEeecccc-------cc--ccC---CH-HHHHHHHHHHHHCCcEEEeCCE
Confidence            677899999  999999999999999999999876421       10  111   12 445555544444 677776643

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.47  E-value=0.88  Score=27.90  Aligned_cols=34  Identities=15%  Similarity=0.061  Sum_probs=29.3

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCH
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTN   68 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~   68 (223)
                      +..++++|.  |.+|.-+++....+|.+|..+.+++
T Consensus        21 ~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          21 EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCCeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            445788888  8899999999999999999998654

>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.22  E-value=0.97  Score=29.91  Aligned_cols=31  Identities=13%  Similarity=0.215  Sum_probs=26.2

Q ss_pred             hCCCEEEEE------CchHHHHHHHHHHcCCeEEEEe
Q 043295           35 QKGEKVFVS------GAYGHLVGQYAKLGGCYVVGSA   65 (223)
Q Consensus        35 ~~g~~vlI~------g~vG~~a~qla~~~g~~v~~~~   65 (223)
                      .+|++|+|.      |+.-.+++++++..|++|+++.
T Consensus       120 ~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~vvgv~  156 (178)
T d1g2qa_         120 PAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYN  156 (178)
T ss_dssp             CTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCEEEEEehHhhhChHHHHHHHHHHHcCCEEEEEE
Confidence            467899988      8888999999999999877654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.04  E-value=1.1  Score=28.58  Aligned_cols=46  Identities=13%  Similarity=0.049  Sum_probs=36.9

Q ss_pred             hhhHHHHHHHHhhCCCEEEEE----CchHHHHHHHHHHcCCeEEEEecCH
Q 043295           23 GFTAYVGFYEISQKGEKVFVS----GAYGHLVGQYAKLGGCYVVGSAGTN   68 (223)
Q Consensus        23 ~~ta~~~l~~~~~~g~~vlI~----g~vG~~a~qla~~~g~~v~~~~~~~   68 (223)
                      ..|....+.....+++.++|.    |-+|.-+++.....|.+|..+.+.+
T Consensus        25 v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          25 QLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             EECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            347777664333788898886    7899999999999999999999764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.99  E-value=4.4  Score=26.41  Aligned_cols=88  Identities=13%  Similarity=-0.029  Sum_probs=50.6

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHH--HHHHHHHhhCCC-e---eeec---CCcccHHHHHHHhCCCCccEE
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNE--KVAILKEKLGFD-D---AFNY---KEETDLKATLKRYFPDGIDVY  107 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~--~~~~~~~~~g~~-~---~~~~---~~~~~~~~~i~~~~~~~~d~v  107 (223)
                      .|.|.  |.+|.+.+..+...|.+|...++..+  ..+.+. +..-. .   .+..   ...+++.+.+.     +.|+|
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~ad~I   75 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSIS-AGREHPRLGVKLNGVEIFWPEQLEKCLE-----NAEVV   75 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHH-TTCCBTTTTBCCCSEEEECGGGHHHHHT-----TCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHh-hhhhhhhhcchhccccccccccHHHHHh-----ccchh
Confidence            46677  99999999888888999999886433  333333 11110 0   0000   00113444332     38999


Q ss_pred             EcCCChHHHHHHHHhhcc---CcEEEEE
Q 043295          108 FDNVGGEMLEAAVANMNL---FGRVAAC  132 (223)
Q Consensus       108 id~~g~~~~~~~~~~l~~---~G~~v~~  132 (223)
                      +-++....+...++.+.+   +..++.+
T Consensus        76 i~avps~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          76 LLGVSTDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             EECSCGGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hcccchhhhHHHHHhhccccccceeccc
Confidence            999988666665554433   2444444

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=82.80  E-value=1  Score=27.25  Aligned_cols=34  Identities=21%  Similarity=0.014  Sum_probs=29.1

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCH
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTN   68 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~   68 (223)
                      +-.++++|.  |.+|.-+++..+.+|.+|..+.+++
T Consensus        19 ~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          19 ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             hCCCEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            445788888  9999999999999999999988764

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=82.75  E-value=0.47  Score=30.32  Aligned_cols=77  Identities=16%  Similarity=0.124  Sum_probs=43.1

Q ss_pred             CchHHHHHHHHHHcCCeE-EEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCCChHHHHHHHHh
Q 043295           44 GAYGHLVGQYAKLGGCYV-VGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVAN  122 (223)
Q Consensus        44 g~vG~~a~qla~~~g~~v-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~g~~~~~~~~~~  122 (223)
                      |.+|.+.++..+. +.++ ....|++++.+.+.+..+. ...+..+   ..        ...|+||=|+..+.+...+..
T Consensus         8 G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~-~~~~~~~---~~--------~~~DiVil~v~d~~i~~v~~~   74 (153)
T d2i76a2           8 GTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGG-KAATLEK---HP--------ELNGVVFVIVPDRYIKTVANH   74 (153)
T ss_dssp             CHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCC---CC--------C---CEEECSCTTTHHHHHTT
T ss_pred             cHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhcccc-cccchhh---hh--------ccCcEEEEeccchhhhHHHhh
Confidence            6666665554433 4443 4678899998888844443 2222211   11        137999999987777778887


Q ss_pred             hcc-CcEEEEEc
Q 043295          123 MNL-FGRVAACG  133 (223)
Q Consensus       123 l~~-~G~~v~~g  133 (223)
                      ++. +..++.++
T Consensus        75 l~~~~~ivi~~s   86 (153)
T d2i76a2          75 LNLGDAVLVHCS   86 (153)
T ss_dssp             TCCSSCCEEECC
T ss_pred             hcccceeeeecc
Confidence            764 44455554

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.64  E-value=4.5  Score=28.96  Aligned_cols=57  Identities=16%  Similarity=0.015  Sum_probs=37.1

Q ss_pred             HHHHHHHHhhCC-CEEEEE--CchHHHHHHHHHHcCCeEEEEe---cCHHHHHHHHHhhCCCee
Q 043295           26 AYVGFYEISQKG-EKVFVS--GAYGHLVGQYAKLGGCYVVGSA---GTNEKVAILKEKLGFDDA   83 (223)
Q Consensus        26 a~~~l~~~~~~g-~~vlI~--g~vG~~a~qla~~~g~~v~~~~---~~~~~~~~~~~~~g~~~~   83 (223)
                      |++.+....+.| ++|+..  |..|.+++..|+..|.+++.+.   .++.|.+.++ .+|+..+
T Consensus        42 a~~~~~~a~~~g~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~-~~Ga~v~  104 (319)
T d1p5ja_          42 IGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLK-NEGATCK  104 (319)
T ss_dssp             HHHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHH-HTTCEEE
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHhhhccccceeccccccccccccccc-cceeccc
Confidence            455555544334 454444  8999999999999999666555   3345677777 7777433

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.63  E-value=2.5  Score=28.66  Aligned_cols=95  Identities=19%  Similarity=0.089  Sum_probs=55.8

Q ss_pred             hCCCEEEEE------CchHHHHHHHHHHcCCeEEEEecCHHH-------HHHHHHhhCCCeeeecCCcccHHHHHHHhCC
Q 043295           35 QKGEKVFVS------GAYGHLVGQYAKLGGCYVVGSAGTNEK-------VAILKEKLGFDDAFNYKEETDLKATLKRYFP  101 (223)
Q Consensus        35 ~~g~~vlI~------g~vG~~a~qla~~~g~~v~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~  101 (223)
                      .+..+|+|.      |+=|.+++..++..|++|......+++       .+... +++...+ +..+. ..        .
T Consensus        38 ~~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~--------~  106 (211)
T d2ax3a2          38 LSDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYK-KFGGKVV-EQFEP-SI--------L  106 (211)
T ss_dssp             CTTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSCCHHHHHHHHHHH-HTTCCEE-SCCCG-GG--------G
T ss_pred             ccCCcEEEEECCCCCchhHHHHHHHHHhcCCeeEEEecCccCCcHHHHHHHHHH-HcCCccc-ccccc-cc--------c
Confidence            356788887      677888888888889987766643321       22233 4444322 21111 10        0


Q ss_pred             CCccEEEcCCCh--------HHHHHHHHhhccC-cEEEEEcccccccc
Q 043295          102 DGIDVYFDNVGG--------EMLEAAVANMNLF-GRVAACGVISECAD  140 (223)
Q Consensus       102 ~~~d~vid~~g~--------~~~~~~~~~l~~~-G~~v~~g~~~~~~~  140 (223)
                      ..+|+++|+.=|        ..+......+... ..++.+-.|++-..
T Consensus       107 ~~~dlIIDal~G~Gl~~~l~~~~~~~i~~iN~~~~~vlsiDiPSGl~~  154 (211)
T d2ax3a2         107 NEFDVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPSGIDS  154 (211)
T ss_dssp             GGCSEEEEESCCTTCCSCCCHHHHHHHHHHHHSCCEEEEESSCTTBCT
T ss_pred             cCceEEEEecccCCccccchHHHHHHHHHHHhhccceeeeccCccccc
Confidence            148999998721        2455666666544 56778877776543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=82.47  E-value=0.1  Score=34.29  Aligned_cols=90  Identities=18%  Similarity=0.116  Sum_probs=51.3

Q ss_pred             EEEEE---CchHHHHHHHHHHc-CCeEEEEecCHHHHHHHHHhhC----C--CeeeecCCcccHHHHHHHhCCCCccEEE
Q 043295           39 KVFVS---GAYGHLVGQYAKLG-GCYVVGSAGTNEKVAILKEKLG----F--DDAFNYKEETDLKATLKRYFPDGIDVYF  108 (223)
Q Consensus        39 ~vlI~---g~vG~~a~qla~~~-g~~v~~~~~~~~~~~~~~~~~g----~--~~~~~~~~~~~~~~~i~~~~~~~~d~vi  108 (223)
                      +|.|+   |-+|++.++.+... ++++++...++.....-. .+|    .  ..+..+.   ++.     .....+|+++
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~-d~~~~~~~~~~~~~~~~---~~~-----~~~~~~DViI   76 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS-DAGELAGAGKTGVTVQS---SLD-----AVKDDFDVFI   76 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC-CTTCSSSSSCCSCCEES---CST-----TTTTSCSEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccc-hhhhhhccccCCceeec---cHH-----HHhcccceEE
Confidence            46666   66777777777665 667776654332211000 111    1  0010011   110     0112589999


Q ss_pred             cCCChHHHHHHHHhhccCcEEEEEccccc
Q 043295          109 DNVGGEMLEAAVANMNLFGRVAACGVISE  137 (223)
Q Consensus       109 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~  137 (223)
                      |++..+.....++.....|.=+.+|+++.
T Consensus        77 DFs~p~~~~~~~~~a~~~~~~~ViGTTG~  105 (162)
T d1diha1          77 DFTRPEGTLNHLAFCRQHGKGMVIGTTGF  105 (162)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECCCCC
T ss_pred             EeccHHHHHHHHHHHHhccceeEEecCCC
Confidence            99998877778888777788888887664

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.03  E-value=0.96  Score=28.78  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=26.6

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEec
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAG   66 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~   66 (223)
                      -.|++|||.  |.+|..-+..+...|++|+.++.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            468999999  88888888888888998888863

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=81.48  E-value=2.7  Score=30.47  Aligned_cols=35  Identities=17%  Similarity=0.103  Sum_probs=29.3

Q ss_pred             CCCEEEEE---CchHHHHHHHHHHcCCeEEEEecCHHH
Q 043295           36 KGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEK   70 (223)
Q Consensus        36 ~g~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~~   70 (223)
                      +.++|+|+   |.+|..++..+...|.+|++++|+..+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~   39 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG   39 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcch
Confidence            56789999   888888888888889999999987553

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.42  E-value=1.9  Score=28.82  Aligned_cols=37  Identities=16%  Similarity=0.323  Sum_probs=32.4

Q ss_pred             EEEEE--CchHHHHHHHHHHcCCeEEEEecCHHHHHHHH
Q 043295           39 KVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILK   75 (223)
Q Consensus        39 ~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~~~~~~~   75 (223)
                      +|.|+  |-+|+..+-.....|.+|++.+.++++.+.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc
Confidence            46777  99999988888888999999999998888776

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.36  E-value=1  Score=32.30  Aligned_cols=42  Identities=21%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             CEEEEE---CchHHHHHHHHHHcCCeEEEEecCHH--HHHHHHHhhCC
Q 043295           38 EKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNE--KVAILKEKLGF   80 (223)
Q Consensus        38 ~~vlI~---g~vG~~a~qla~~~g~~v~~~~~~~~--~~~~~~~~~g~   80 (223)
                      ++|||+   |.+|..++......|++|+++++...  ..+.++ .++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~-~~~~   47 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLR-ELGI   47 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHH-HTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHH-Hhcc
Confidence            579999   78999999888778999999996542  234444 4443

>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId: 5661]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Leishmania donovani [TaxId: 5661]

Probab=81.24  E-value=1.2  Score=30.96  Aligned_cols=31  Identities=23%  Similarity=0.181  Sum_probs=26.2

Q ss_pred             hCCCEEEEE------CchHHHHHHHHHHcCCeEEEEe
Q 043295           35 QKGEKVFVS------GAYGHLVGQYAKLGGCYVVGSA   65 (223)
Q Consensus        35 ~~g~~vlI~------g~vG~~a~qla~~~g~~v~~~~   65 (223)
                      .+|++|+|.      |+.-.+++++++..|++|+++.
T Consensus       136 ~~g~rVlIVDDviaTGgT~~aa~~ll~~~Ga~Vvg~~  172 (236)
T d1qb7a_         136 GKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMV  172 (236)
T ss_dssp             CTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCceEEEehhhhhccHHHHHHHHHHHHCCCEEEEEE
Confidence            368899888      8888999999999999877554

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=81.00  E-value=4.7  Score=26.36  Aligned_cols=94  Identities=16%  Similarity=0.012  Sum_probs=53.2

Q ss_pred             hCCCEEEEE-CchHHHHHHHHHHcCC-eEEEEecCHHHHHHHHH---hhCCCe--eeecCCcccHHHHHHHhCCC-CccE
Q 043295           35 QKGEKVFVS-GAYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKE---KLGFDD--AFNYKEETDLKATLKRYFPD-GIDV  106 (223)
Q Consensus        35 ~~g~~vlI~-g~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~---~~g~~~--~~~~~~~~~~~~~i~~~~~~-~~d~  106 (223)
                      -.+.++|=. +|.|.+.+..+ +.|+ +|+.+..+.+-...+++   .++...  ..-...  +..+.++..... .+|+
T Consensus        42 ~~~~~vLDlFaGsG~~glEal-SRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~--d~~~~l~~~~~~~~fDl  118 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEAL-SRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQ--SSLDFLKQPQNQPHFDV  118 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHH-HTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECS--CHHHHTTSCCSSCCEEE
T ss_pred             cccceEeecccCccceeeeee-eecceeeEEeecccchhhhHhhHHhhhcccccccccccc--cccccccccccCCcccE
Confidence            466666655 77787777766 6788 89999988887766653   345421  211122  344444443334 7999


Q ss_pred             EE-cCCCh-HHHHHHHH------hhccCcEEEE
Q 043295          107 YF-DNVGG-EMLEAAVA------NMNLFGRVAA  131 (223)
Q Consensus       107 vi-d~~g~-~~~~~~~~------~l~~~G~~v~  131 (223)
                      || |..=. ......+.      +++++|.++.
T Consensus       119 IFlDPPY~~~~~~~~l~~l~~~~~L~~~~liii  151 (183)
T d2ifta1         119 VFLDPPFHFNLAEQAISLLCENNWLKPNALIYV  151 (183)
T ss_dssp             EEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             EEechhHhhhhHHHHHHHHHHhCCcCCCcEEEE
Confidence            86 43322 23333333      4555565543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.00  E-value=0.85  Score=28.01  Aligned_cols=34  Identities=21%  Similarity=0.069  Sum_probs=29.9

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCH
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTN   68 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~   68 (223)
                      +..++++|.  |.+|+-+++..+.+|.+|..+.+++
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence            566788888  9999999999999999999988764

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.93  E-value=2  Score=28.70  Aligned_cols=66  Identities=17%  Similarity=0.146  Sum_probs=39.9

Q ss_pred             CCEEEEE---CchHHHHHHHHHHcCC--eEEEEecCHHHHHHHHHhhCCCeeeecCCcccHHHHHHHhCCCCccEEEcCC
Q 043295           37 GEKVFVS---GAYGHLVGQYAKLGGC--YVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV  111 (223)
Q Consensus        37 g~~vlI~---g~vG~~a~qla~~~g~--~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~d~vid~~  111 (223)
                      .++|||+   |.+|..+++.+...|.  +|++..+++..        .... +..... ++.+ +.....+.+|.|+.|+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~--------~~~~-~~~~~~-d~~~-~~~~~~~~~d~vi~~~   70 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA--------EHPR-LDNPVG-PLAE-LLPQLDGSIDTAFCCL   70 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC--------CCTT-EECCBS-CHHH-HGGGCCSCCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh--------hccc-cccccc-chhh-hhhccccchheeeeee
Confidence            3789999   8899988888777786  67776654311        1111 122222 3433 3333334689999998


Q ss_pred             Ch
Q 043295          112 GG  113 (223)
Q Consensus       112 g~  113 (223)
                      |.
T Consensus        71 g~   72 (212)
T d2a35a1          71 GT   72 (212)
T ss_dssp             CC
T ss_pred             ee
Confidence            64

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=80.85  E-value=3.2  Score=26.18  Aligned_cols=63  Identities=11%  Similarity=-0.016  Sum_probs=46.3

Q ss_pred             hHHHHHHHHh-hCCCEEEEE---CchHHHHHHHHHHcC--CeEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           25 TAYVGFYEIS-QKGEKVFVS---GAYGHLVGQYAKLGG--CYVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        25 ta~~~l~~~~-~~g~~vlI~---g~vG~~a~qla~~~g--~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      +--..|.+.+ ..-+.+++.   -..-..++..+|..+  .++++.+.+++..+.++ ++|++.++++..
T Consensus        59 ~d~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~-~~Gad~vi~p~~  127 (153)
T d1id1a_          59 NDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIK-MVHPDIILSPQL  127 (153)
T ss_dssp             TSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHH-TTCCSEEECHHH
T ss_pred             cchHHHHHhccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHH-HCCCCEEECHHH
Confidence            4445666776 777777777   334566677787753  38999999998889898 999999987643

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.85  E-value=7.3  Score=27.47  Aligned_cols=47  Identities=21%  Similarity=0.225  Sum_probs=32.4

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEe---cCHHHHHHHHHhhCCCe
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSA---GTNEKVAILKEKLGFDD   82 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~---~~~~~~~~~~~~~g~~~   82 (223)
                      .++..|+..  |.-|.+++..|+..|.+++.+.   .++.+...++ .+|++.
T Consensus        59 ~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~-~~ga~v  110 (302)
T d1fcja_          59 KPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLK-ALGANL  110 (302)
T ss_dssp             CTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHH-HTTCEE
T ss_pred             CCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHH-Hhccce
Confidence            445555555  8889999999999998554444   3455667777 777743

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=80.75  E-value=1  Score=30.97  Aligned_cols=35  Identities=14%  Similarity=0.193  Sum_probs=30.1

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCHH
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTNE   69 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~~   69 (223)
                      ..+++|+|.  |+.|+.++..++..|.+|..+..+++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            457899999  99999999999999999999986653

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=80.67  E-value=7.7  Score=27.99  Aligned_cols=58  Identities=22%  Similarity=0.130  Sum_probs=38.3

Q ss_pred             hHHHHHHHHh-hCCCEEEEE--CchHHHHHHHHHHcCCe--EEEEec--CHHHHHHHHHhhCCCee
Q 043295           25 TAYVGFYEIS-QKGEKVFVS--GAYGHLVGQYAKLGGCY--VVGSAG--TNEKVAILKEKLGFDDA   83 (223)
Q Consensus        25 ta~~~l~~~~-~~g~~vlI~--g~vG~~a~qla~~~g~~--v~~~~~--~~~~~~~~~~~~g~~~~   83 (223)
                      .|++.+.+.. ...+.++..  |+-|.+++..|+..|.+  |+....  +.++...++ .+|++.+
T Consensus        64 ~a~~~i~~a~~~g~~~iv~~SsGN~g~a~a~~a~~~g~~~~i~~p~~~~~~~~~~~~~-~~Ga~vi  128 (351)
T d1v7ca_          64 GMTLAVSKAVEGGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSL-VHGARIV  128 (351)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTCSCHHHHHHHH-HTTCEEE
T ss_pred             HHHHHHHHHHhcCCCeeeeeccccHHHHHHHHHhhhcccceeecCCchHHHHHHHhhh-cCCCceE
Confidence            4566665555 556666666  88999999999999985  333322  234555567 8888544

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.28  E-value=1.3  Score=27.25  Aligned_cols=34  Identities=6%  Similarity=-0.075  Sum_probs=29.4

Q ss_pred             hCCCEEEEE--CchHHHHHHHHHHcCCeEEEEecCH
Q 043295           35 QKGEKVFVS--GAYGHLVGQYAKLGGCYVVGSAGTN   68 (223)
Q Consensus        35 ~~g~~vlI~--g~vG~~a~qla~~~g~~v~~~~~~~   68 (223)
                      +..++++|.  |.+|+-+++.++.+|.+|+.+.+++
T Consensus        20 ~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          20 ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             hcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            445789888  9999999999999999999999764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=80.03  E-value=4  Score=24.86  Aligned_cols=60  Identities=17%  Similarity=0.107  Sum_probs=41.1

Q ss_pred             HHHHHHh-hCCCEEEEE--C--chHHHHHHHHHHcCC-eEEEEecCHHHHHHHHHhhCCCeeeecCC
Q 043295           28 VGFYEIS-QKGEKVFVS--G--AYGHLVGQYAKLGGC-YVVGSAGTNEKVAILKEKLGFDDAFNYKE   88 (223)
Q Consensus        28 ~~l~~~~-~~g~~vlI~--g--~vG~~a~qla~~~g~-~v~~~~~~~~~~~~~~~~~g~~~~~~~~~   88 (223)
                      ..|.... ..-+.+++.  .  ..-..+...++..+. ++++.+.+++..+.++ .+|++.++++..
T Consensus        55 ~~l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~-~~Gad~vi~p~~  120 (134)
T d2hmva1          55 NELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLE-KIGADRIIHPEK  120 (134)
T ss_dssp             THHHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHH-HHTCSEEECHHH
T ss_pred             hhhhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHH-HCCCCEEEChHH
Confidence            3455555 556777666  2  223344455566675 8999998988888888 999999986543