Citrus Sinensis ID: 043302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSSTSKPFAN
Secondary Structure (PSIPRED)
cccccEEEEEcccccEEEEcHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEccccEEEEcHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
msthkkitlksldgkafkvDEVVALESQTIEHmigddcvknkiplpnvTSKILSKVINLLTvsstskpfan
Flexible Loop (DISEMBL)
msthkkitlksldgkafkvDEVVALESQTIehmigddcvknkiPLPNVTSKILSKVInlltvsstskpfan
Low Complexity Region (SEG)
MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSSTSKPFAN
Disordered region (IsUnstruct)
***********LDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTV*********
Disordered Region (DISOPRED)
***HKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLL***********
Disordered Region (DISEMBL)
MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSSTSKPFAN
Disordered Region (DISPRO)
****KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSSTS*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSSTSKPFAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q9FHW7	171	SKP1-like protein 1B OS=A	yes	no	0.802	0.333	0.771	4e-18
Q39255	160	SKP1-like protein 1A OS=A	no	no	0.746	0.331	0.735	3e-16
Q9SL93	163	SKP1-like protein 3 OS=Ar	no	no	0.788	0.343	0.678	9e-15
Q9LNT9	163	SKP1-like protein 4 OS=Ar	no	no	0.788	0.343	0.625	1e-13
O65674	152	SKP1-like protein 12 OS=A	no	no	0.774	0.361	0.6	1e-11
O49484	152	SKP1-like protein 11 OS=A	no	no	0.746	0.348	0.622	1e-11
O81058	200	SKP1-like protein 19 OS=A	no	no	0.774	0.275	0.6	1e-11
Q9M1X5	154	SKP1-like protein 13 OS=A	no	no	0.746	0.344	0.603	2e-11
Q9LSX8	152	SKP1-like protein 10 OS=A	no	no	0.788	0.368	0.614	5e-11
Q9LSY0	125	SKP1-like protein 7 OS=Ar	no	no	0.788	0.448	0.578	2e-09

>sp|Q9FHW7|SKP1B_ARATH SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/57 (77%), Positives = 49/57 (85%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          MST +KITLKS DG+ F++DE VALESQTI+HMI DDC  N IPLPNVTSKILSKVI
Sbjct: 1  MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVI 57

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1. SCF(UFO) is required for vegetative and floral organ development as well as for male gametogenesis. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1), SCF(ADO2), SCF(ADO3) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling. Plays a role during embryogenesis and early postembryonic development, especially during cell elongation and division. Contributes to the correct chromosome segregation during tetrad formation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39255|SKP1A_ARATH SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 46/53 (86%)

Query: 5  KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          KKI LKS DG++F+V+E VALESQTI HM+ DDCV N +PLPNVTSKIL+KVI
Sbjct: 4  KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVI 56

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1. SCF(UFO) is required for vegetative and floral organ development as well as for male gametogenesis. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1), SCF(ADO2), SCF(ADO3) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling. Plays a role during embryogenesis and early postembryonic development, especially during cell elongation and division. Contributes to the correct chromosome segregation during tetrad formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SL93|ASK3_ARATH SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 45/56 (80%)

Query: 2  STHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
           T K I LKS DG++F+V+E VA+ESQTI+HMI DDCV N IPLPNVT  IL+KVI
Sbjct: 3  ETKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVI 58

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 44/56 (78%)

Query: 2  STHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
           T K I LKS DG++F+++E VA++SQTI+HMI DDC  N IPLPNVT  IL+KVI
Sbjct: 3  ETKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVI 58

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|O65674|ASK12_ARATH SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 3  THKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          + K I L S DG++F+V+E VA++SQTI HM+ DDCV + IPL NV SKIL KVI
Sbjct: 2  SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVI 56

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.

Arabidopsis thaliana (taxid: 3702)

>sp|O49484|ASK11_ARATH SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 41/53 (77%)

Query: 5  KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          K I L S DG++F+V+E VA++SQTI HM+ DDCV + IPL NV SKIL KVI
Sbjct: 4  KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVI 56

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.

Arabidopsis thaliana (taxid: 3702)

>sp|O81058|ASK19_ARATH SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 5  KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINL 59
          KKI L S DG++FKV+EVVA + Q + H+I DDC  NKIP+PNVT +IL+KVI  
Sbjct: 4  KKIVLTSSDGESFKVEEVVARKLQIVGHIIEDDCATNKIPIPNVTGEILAKVIEY 58

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1X5|ASK13_ARATH SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 41/53 (77%)

Query: 5  KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          K + L S DG++F+V+E VA++SQTI HMI DDCV N +P+ NVT  ILSKVI
Sbjct: 3  KMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVI 55

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSX8|ASK10_ARATH SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          MST KKI LKS DG +F+V+E  A + QTI HM  DDC  N IPLP VT KIL  VI
Sbjct: 1  MST-KKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVI 56

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSY0|ASK7_ARATH SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          MST KKI LKS DGK F+++E  A + QTI HMI  +C  N IP+ NVTS+IL  VI
Sbjct: 1  MST-KKIMLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVI 56

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
317106591	100	JHL20J20.6 [Jatropha curcas]	0.830	0.59	0.762	3e-17
255539022	157	skp1, putative [Ricinus communis] gi|223	0.802	0.363	0.789	4e-17
225457883	156	PREDICTED: SKP1-like protein 1B isoform	0.802	0.365	0.789	4e-17
297791859	169	hypothetical protein ARALYDRAFT_917589 [	0.802	0.337	0.771	2e-16
224065753	157	predicted protein [Populus trichocarpa]	0.802	0.363	0.754	2e-16
356496612	155	PREDICTED: SKP1-like protein 1A-like [Gl	0.802	0.367	0.771	2e-16
18422184	171	S-phase kinase-associated protein 1 [Ara	0.802	0.333	0.771	2e-16
3719211	172	UIP2 [Arabidopsis thaliana]	0.802	0.331	0.771	2e-16
386688464	156	Skp1-like protein 1 [Prunus avium]	0.802	0.365	0.736	2e-16
151564277	157	SKP1 component-like 1 [Humulus lupulus]	0.802	0.363	0.771	3e-16

>gi|317106591|dbj|BAJ53099.1| JHL20J20.6 [Jatropha curcas]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 49/59 (83%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINL 59
          MST +KITLKS DG+ F+VDE VALESQTI+HMI DDC  N IPLPNVTSKILSKVI  
Sbjct: 1  MSTGRKITLKSADGETFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEY 59

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539022|ref|XP_002510576.1| skp1, putative [Ricinus communis] gi|223551277|gb|EEF52763.1| skp1, putative [Ricinus communis]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/57 (78%), Positives = 49/57 (85%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          MST +KITLKS DG+ F+VDE VALESQTI+HMI DDC  N IPLPNVTSKILSKVI
Sbjct: 1  MSTSRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVI 57

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457883|ref|XP_002270061.1| PREDICTED: SKP1-like protein 1B isoform 2 [Vitis vinifera] gi|147788379|emb|CAN76662.1| hypothetical protein VITISV_040452 [Vitis vinifera]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 45/57 (78%), Positives = 49/57 (85%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          MS+ +KITLKS DG+AF VDE VALESQTI+HMI DDC  N IPLPNVTSKILSKVI
Sbjct: 1  MSSSRKITLKSSDGEAFDVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVI 57

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791859|ref|XP_002863814.1| hypothetical protein ARALYDRAFT_917589 [Arabidopsis lyrata subsp. lyrata] gi|297309649|gb|EFH40073.1| hypothetical protein ARALYDRAFT_917589 [Arabidopsis lyrata subsp. lyrata]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/57 (77%), Positives = 49/57 (85%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          MST +KITLKS DG+ F++DE VALESQTI+HMI DDC  N IPLPNVTSKILSKVI
Sbjct: 1  MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVI 57

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065753|ref|XP_002301954.1| predicted protein [Populus trichocarpa] gi|118485200|gb|ABK94461.1| unknown [Populus trichocarpa] gi|222843680|gb|EEE81227.1| predicted protein [Populus trichocarpa]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/57 (75%), Positives = 49/57 (85%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          MS+ +K TLKS DG+AF+VDE VALESQTI+HMI +DC  N IPLPNVTSKILSKVI
Sbjct: 1  MSSSRKFTLKSSDGEAFEVDEAVALESQTIKHMIEEDCADNAIPLPNVTSKILSKVI 57

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496612|ref|XP_003517160.1| PREDICTED: SKP1-like protein 1A-like [Glycine max]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/57 (77%), Positives = 50/57 (87%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          MS+ KKITLKS DG+AF+VDE VALESQTI+HMI DDC  + IPLPNVTSKIL+KVI
Sbjct: 1  MSSAKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVI 57

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422184|ref|NP_568603.1| S-phase kinase-associated protein 1 [Arabidopsis thaliana] gi|71153765|sp|Q9FHW7.1|SKP1B_ARATH RecName: Full=SKP1-like protein 1B; AltName: Full=SKP1-like 2; AltName: Full=UFO-binding protein 2 gi|3068809|gb|AAC14445.1| Skp1 homolog [Arabidopsis thaliana] gi|9757964|dbj|BAB08452.1| UIP2 [Arabidopsis thaliana] gi|28466911|gb|AAO44064.1| At5g42190 [Arabidopsis thaliana] gi|110743841|dbj|BAE99755.1| UIP2 [Arabidopsis thaliana] gi|332007394|gb|AED94777.1| S-phase kinase-associated protein 1 [Arabidopsis thaliana]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/57 (77%), Positives = 49/57 (85%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          MST +KITLKS DG+ F++DE VALESQTI+HMI DDC  N IPLPNVTSKILSKVI
Sbjct: 1  MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVI 57

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3719211|gb|AAC63110.1| UIP2 [Arabidopsis thaliana]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/57 (77%), Positives = 49/57 (85%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          MST +KITLKS DG+ F++DE VALESQTI+HMI DDC  N IPLPNVTSKILSKVI
Sbjct: 2  MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVI 58

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|386688464|gb|AFJ21662.1| Skp1-like protein 1 [Prunus avium]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/57 (73%), Positives = 49/57 (85%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          MS+ +KITLKS DG+ F+VDE VALESQTI+HM+ DDC  N IPLPNVTSKIL+KVI
Sbjct: 1  MSSERKITLKSSDGETFEVDEAVALESQTIKHMVEDDCADNGIPLPNVTSKILAKVI 57

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|151564277|gb|ABS17589.1| SKP1 component-like 1 [Humulus lupulus]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/57 (77%), Positives = 48/57 (84%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          MST +KITLKS DG+  +VDE VALESQTI+HMI DDC  N IPLPNVTSKILSKVI
Sbjct: 1  MSTGRKITLKSSDGETLEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVI 57

Source: Humulus lupulus

Species: Humulus lupulus

Genus: Humulus

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
TAIR|locus:2165825	171	ASK2 "AT5G42190" [Arabidopsis	0.802	0.333	0.771	9.5e-18
TAIR|locus:2204435	160	SKP1 "AT1G75950" [Arabidopsis	0.746	0.331	0.735	4.7e-16
TAIR|locus:2050281	163	SK3 "AT2G25700" [Arabidopsis t	0.774	0.337	0.690	8.8e-15
TAIR|locus:2198621	163	SK4 "AT1G20140" [Arabidopsis t	0.774	0.337	0.636	7.9e-14
TAIR|locus:2056966	200	SK19 "AT2G03160" [Arabidopsis	0.788	0.28	0.614	7.1e-13
TAIR|locus:2124281	152	SK11 "AT4G34210" [Arabidopsis	0.788	0.368	0.614	3.9e-12
TAIR|locus:2139504	152	SK12 "AT4G34470" [Arabidopsis	0.788	0.368	0.614	3.9e-12
TAIR|locus:2080532	154	SK13 "AT3G60010" [Arabidopsis	0.746	0.344	0.603	5e-12
TAIR|locus:2093094	152	SK10 "AT3G21860" [Arabidopsis	0.788	0.368	0.614	1.3e-11
TAIR|locus:2056956	149	SK14 "AT2G03170" [Arabidopsis	0.788	0.375	0.543	9.4e-11

TAIR|locus:2165825 ASK2 "AT5G42190" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 44/57 (77%), Positives = 49/57 (85%)

Query:     1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
             MST +KITLKS DG+ F++DE VALESQTI+HMI DDC  N IPLPNVTSKILSKVI
Sbjct:     1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVI 57

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;RCA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2204435 SKP1 "AT1G75950" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 39/53 (73%), Positives = 46/53 (86%)

Query:     5 KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
             KKI LKS DG++F+V+E VALESQTI HM+ DDCV N +PLPNVTSKIL+KVI
Sbjct:     4 KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVI 56

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA;NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007140 "male meiosis" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0045910 "negative regulation of DNA recombination" evidence=IMP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0007067 "mitosis" evidence=RCA;TAS

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2050281 SK3 "AT2G25700" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 38/55 (69%), Positives = 45/55 (81%)

Query:     3 THKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
             T K I LKS DG++F+V+E VA+ESQTI+HMI DDCV N IPLPNVT  IL+KVI
Sbjct:     4 TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVI 58

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2198621 SK4 "AT1G20140" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 35/55 (63%), Positives = 44/55 (80%)

Query:     3 THKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
             T K I LKS DG++F+++E VA++SQTI+HMI DDC  N IPLPNVT  IL+KVI
Sbjct:     4 TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVI 58

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2056966 SK19 "AT2G03160" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query:     1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
             MS+ KKI L S DG++FKV+EVVA + Q + H+I DDC  NKIP+PNVT +IL+KVI
Sbjct:     1 MSS-KKIVLTSSDGESFKVEEVVARKLQIVGHIIEDDCATNKIPIPNVTGEILAKVI 56

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2124281 SK11 "AT4G34210" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query:     1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
             MS+ K I L S DG++F+V+E VA++SQTI HM+ DDCV + IPL NV SKIL KVI
Sbjct:     1 MSS-KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVI 56

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2139504 SK12 "AT4G34470" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query:     1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
             MS+ K I L S DG++F+V+E VA++SQTI HM+ DDCV + IPL NV SKIL KVI
Sbjct:     1 MSS-KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVI 56

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2080532 SK13 "AT3G60010" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 32/53 (60%), Positives = 41/53 (77%)

Query:     5 KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
             K + L S DG++F+V+E VA++SQTI HMI DDCV N +P+ NVT  ILSKVI
Sbjct:     3 KMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVI 55

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2093094 SK10 "AT3G21860" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 35/57 (61%), Positives = 39/57 (68%)

Query:     1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
             MST KKI LKS DG +F+V+E  A + QTI HM  DDC  N IPLP VT KIL  VI
Sbjct:     1 MST-KKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVI 56

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2056956 SK14 "AT2G03170" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query:     1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
             MS++K I L S DG++F+V+E VA + + +EHMI DDCV  ++PL NVT KILS V+
Sbjct:     1 MSSNK-IVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVV 56

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FHW7	SKP1B_ARATH	No assigned EC number	0.7719	0.8028	0.3333	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00014362001	SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotgun sequence); (156 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016431001	SubName- Full=Putative uncharacterized protein (Chromosome chr11 scaffold_13, whole genome shot [...] (120 aa)					•	•	•		0.837

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	71
pfam03931	61	pfam03931, Skp1_POZ, Skp1 family, tetramerisation	1e-17
smart00512	104	smart00512, Skp1, Found in Skp1 protein family	6e-15
COG5201	158	COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen	3e-05

>gnl|CDD|217800 pfam03931, Skp1_POZ, Skp1 family, tetramerisation domain

 Score = 68.8 bits (169), Expect = 1e-17
 Identities = 31/54 (57%), Positives = 39/54 (72%)

Query: 5  KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVIN 58
          K I L S DG+ F+V+  VA +S+TI+ MI D  V + IPLPNVTSKIL+KVI 
Sbjct: 1  KLIKLTSSDGEIFEVEREVARQSKTIKAMIEDLGVDDPIPLPNVTSKILAKVIE 54

Length = 61

>gnl|CDD|214704 smart00512, Skp1, Found in Skp1 protein family

 Score = 63.1 bits (154), Expect = 6e-15
 Identities = 33/57 (57%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 5  KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV----KNKIPLPNVTSKILSKVI 57
          K I L S DG+ F+V+  VA +S+TI+ MI D  V     N IPLPNVTSKILSKVI
Sbjct: 2  KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVI 58

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. Length = 104

>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

 Score = 38.8 bits (90), Expect = 3e-05
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 6  KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKN-KIPLPNVTSKILSKVINLLTVSS 64
           I L+S+DG+ F+VDE +A  S  I++M+ D    N  IP PNV S +L KV   +   +
Sbjct: 3  MIELESIDGEIFRVDENIAERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHT 62

Query: 65 TS 66
          +S
Sbjct: 63 SS 64

Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	99.95
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	99.91
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	99.91
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	99.7
KOG3473	112	consensus RNA polymerase II transcription elongati	99.67
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	97.6
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	97.11
PHA02713	557	hypothetical protein; Provisional	95.18
PHA03098	534	kelch-like protein; Provisional	93.69
cd00068	57	GGL G protein gamma subunit-like motifs, the alpha	89.85
smart00224	63	GGL G protein gamma subunit-like motifs.	87.0
PHA02790	480	Kelch-like protein; Provisional	85.08
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	83.7

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=99.95  E-value=3.2e-28  Score=134.72  Aligned_cols=61  Identities=39%  Similarity=0.534  Sum_probs=55.1

Q ss_pred             ceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCCCC-cccCCCCCHHHHHHHHHHhhhcCC
Q 043302            5 KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKN-KIPLPNVTSKILSKVINLLTVSST   65 (71)
Q Consensus         5 ~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~~~-~Ipl~~V~~~~L~kViewc~~h~~   65 (71)
                      +.|+|+|+||++|+|++++|++|++|++|+++.+.++ +||||+|+|++|+||+|||+||++
T Consensus         1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~H~~   62 (62)
T PF03931_consen    1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEHHKN   62 (62)
T ss_dssp             -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHHhcCC
Confidence            3699999999999999999999999999999987654 599999999999999999999973

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.3e-24  Score=139.84  Aligned_cols=67  Identities=48%  Similarity=0.613  Sum_probs=60.5

Q ss_pred             CceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCC-CCC--cccCCCCCHHHHHHHHHHhhhcCCCCCCC
Q 043302            4 HKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDC-VKN--KIPLPNVTSKILSKVINLLTVSSTSKPFA   70 (71)
Q Consensus         4 ~~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~-~~~--~Ipl~~V~~~~L~kViewc~~h~~d~p~~   70 (71)
                      .+.|+|+|+||++|+|++++|++|.+|++++.+.| .++  +||||+|+|.+|+|||+||+||++|+|..
T Consensus         4 ~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~   73 (162)
T KOG1724|consen    4 KKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPAN   73 (162)
T ss_pred             CCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccc
Confidence            57999999999999999999999999999887664 344  89999999999999999999999998753

>smart00512 Skp1 Found in Skp1 protein family

Probab=99.91  E-value=4.8e-24  Score=127.54  Aligned_cols=64  Identities=53%  Similarity=0.649  Sum_probs=58.9

Q ss_pred             ceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCCC----CcccCCCCCHHHHHHHHHHhhhcCCCCC
Q 043302            5 KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVK----NKIPLPNVTSKILSKVINLLTVSSTSKP   68 (71)
Q Consensus         5 ~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~~----~~Ipl~~V~~~~L~kViewc~~h~~d~p   68 (71)
                      ++|+|+|+||++|+|++++|++|++|++|+++.+..    ++||||+|+|++|+||++||+||+.+++
T Consensus         2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~   69 (104)
T smart00512        2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPP   69 (104)
T ss_pred             CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCC
Confidence            479999999999999999999999999999987642    4899999999999999999999998764

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=5e-17  Score=101.96  Aligned_cols=61  Identities=39%  Similarity=0.571  Sum_probs=56.6

Q ss_pred             eEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCC-CCcccCCCCCHHHHHHHHHHhhhcCCC
Q 043302            6 KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV-KNKIPLPNVTSKILSKVINLLTVSSTS   66 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~-~~~Ipl~~V~~~~L~kViewc~~h~~d   66 (71)
                      +|.|+|.||++|.|+..+|..|-+|++|+.+.++ +-+||+|||.|.+|.||++||+||+..
T Consensus         3 ~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s   64 (158)
T COG5201           3 MIELESIDGEIFRVDENIAERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSS   64 (158)
T ss_pred             ceEEEecCCcEEEehHHHHHHHHHHHHHhccccccCCCCcccchhHHHHHHHHHHHHhcccc
Confidence            6999999999999999999999999999988764 568999999999999999999999873

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=99.67  E-value=1.2e-16  Score=95.84  Aligned_cols=61  Identities=28%  Similarity=0.342  Sum_probs=56.0

Q ss_pred             CceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCC-----CCCcccCCCCCHHHHHHHHHHhhhcC
Q 043302            4 HKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDC-----VKNKIPLPNVTSKILSKVINLLTVSS   64 (71)
Q Consensus         4 ~~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~-----~~~~Ipl~~V~~~~L~kViewc~~h~   64 (71)
                      +++|+|+|+||++|++++++|+.|+|||.||.+.+     ..+++-++++.+.+|+||++|+.|..
T Consensus        16 ~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~   81 (112)
T KOG3473|consen   16 SMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKV   81 (112)
T ss_pred             hhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhhee
Confidence            56999999999999999999999999999999876     24789999999999999999998753

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=97.60  E-value=0.00065  Score=39.31  Aligned_cols=59  Identities=19%  Similarity=0.358  Sum_probs=47.9

Q ss_pred             ceEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCC-C-C--CcccCCCCCHHHHHHHHHHhhhc
Q 043302            5 KKITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDC-V-K--NKIPLPNVTSKILSKVINLLTVS   63 (71)
Q Consensus         5 ~~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~-~-~--~~Ipl~~V~~~~L~kViewc~~h   63 (71)
                      ..++|+..||..|.+.+.+. .+|..+++|+...+ . .  ..|++++++...++.+++||...
T Consensus        11 ~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~   74 (111)
T PF00651_consen   11 SDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTG   74 (111)
T ss_dssp             --EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCC
Confidence            35888999999999999985 67999999998873 2 2  36889999999999999999644

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=97.11  E-value=0.0015  Score=35.51  Aligned_cols=55  Identities=22%  Similarity=0.340  Sum_probs=45.1

Q ss_pred             eCCCCEEEEeHHHHHH-hHHHHHHhhCCC---CCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302           11 SLDGKAFKVDEVVALE-SQTIEHMIGDDC---VKNKIPLPNVTSKILSKVINLLTVSST   65 (71)
Q Consensus        11 SsDg~~f~v~~~~a~~-S~~i~~ml~~~~---~~~~Ipl~~V~~~~L~kViewc~~h~~   65 (71)
                      ..+|+.|.+.+.++.. |..++.|+....   ....|++++++...++.+++|+..-.-
T Consensus         5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~   63 (90)
T smart00225        5 VVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKL   63 (90)
T ss_pred             EECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCcee
Confidence            4577999999988664 799999998754   357889999999999999999986543

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PHA02713 hypothetical protein; Provisional

Probab=95.18  E-value=0.082  Score=39.45  Aligned_cols=58  Identities=10%  Similarity=0.222  Sum_probs=48.3

Q ss_pred             eEEEEeCCCCEEEEeHHHHH-HhHHHHHHhhCCC----CCCcccCCCCCHHHHHHHHHHhhhc
Q 043302            6 KITLKSLDGKAFKVDEVVAL-ESQTIEHMIGDDC----VKNKIPLPNVTSKILSKVINLLTVS   63 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a~-~S~~i~~ml~~~~----~~~~Ipl~~V~~~~L~kViewc~~h   63 (71)
                      -|+|...+|++|.+-+.+.. .|.-.+.|+...-    ..+.|.|.+|+..+|+.|++|+...
T Consensus        27 DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~   89 (557)
T PHA02713         27 DVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNR   89 (557)
T ss_pred             CEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCC
Confidence            47888777999999999854 7999999997642    1467899999999999999998764

>PHA03098 kelch-like protein; Provisional

Probab=93.69  E-value=0.36  Score=35.20  Aligned_cols=56  Identities=18%  Similarity=0.261  Sum_probs=45.8

Q ss_pred             EEEE-eCCCCEEEEeHHHHH-HhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhc
Q 043302            7 ITLK-SLDGKAFKVDEVVAL-ESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVS   63 (71)
Q Consensus         7 i~L~-SsDg~~f~v~~~~a~-~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h   63 (71)
                      ++|. +-+|++|.+.+.++. .|..++.|+.+.-..+.|.|+. +..+|+.|++|+..-
T Consensus        12 v~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~~~~i~l~~-~~~~~~~~l~y~Ytg   69 (534)
T PHA03098         12 ESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENEINLNI-DYDSFNEVIKYIYTG   69 (534)
T ss_pred             EEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCCCceEEecC-CHHHHHHHHHHhcCC
Confidence            4444 478999999999955 6999999998754467899988 999999999998754

>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors

Probab=89.85  E-value=0.5  Score=25.37  Aligned_cols=21  Identities=14%  Similarity=0.314  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHhhhcCCCCCCC
Q 043302           50 SKILSKVINLLTVSSTSKPFA   70 (71)
Q Consensus        50 ~~~L~kViewc~~h~~d~p~~   70 (71)
                      |...+-+++||+.|...+|+.
T Consensus        23 S~a~~~l~~y~e~~~~~Dpll   43 (57)
T cd00068          23 SKAAAELLKYCEQNAENDPLL   43 (57)
T ss_pred             HHHHHHHHHHHHhcCCCCCCC
Confidence            677888999999999888875

>smart00224 GGL G protein gamma subunit-like motifs

Probab=87.00  E-value=0.89  Score=24.86  Aligned_cols=21  Identities=14%  Similarity=0.254  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHhhhcCCCCCCC
Q 043302           50 SKILSKVINLLTVSSTSKPFA   70 (71)
Q Consensus        50 ~~~L~kViewc~~h~~d~p~~   70 (71)
                      |...+-+++||+.|...+|+.
T Consensus        23 S~a~~~li~y~e~~~~~DP~l   43 (63)
T smart00224       23 SKAAEELLAYCEQHAEEDPLL   43 (63)
T ss_pred             HHHHHHHHHHHHcCCCCCCCc
Confidence            677888999999999988875

>PHA02790 Kelch-like protein; Provisional

Probab=85.08  E-value=1.9  Score=31.56  Aligned_cols=51  Identities=10%  Similarity=0.100  Sum_probs=39.1

Q ss_pred             eCCCCEEEEeHHH-HHHhHHHHHHhhCCCC--CCcccC--CCCCHHHHHHHHHHhh
Q 043302           11 SLDGKAFKVDEVV-ALESQTIEHMIGDDCV--KNKIPL--PNVTSKILSKVINLLT   61 (71)
Q Consensus        11 SsDg~~f~v~~~~-a~~S~~i~~ml~~~~~--~~~Ipl--~~V~~~~L~kViewc~   61 (71)
                      ---|.+|.+-|.+ |..|.-.+.|+.+.-.  ...|.+  .+|+..+|+.||+|+.
T Consensus        27 ~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~Y   82 (480)
T PHA02790         27 EAIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSY   82 (480)
T ss_pred             EEcCcEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhhe
Confidence            3457899999998 7779999999965421  233443  3899999999999974

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=83.70  E-value=3.2  Score=31.42  Aligned_cols=57  Identities=21%  Similarity=0.266  Sum_probs=44.2

Q ss_pred             EEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCC---CCCcccCCCCCHHHHHHHHHHhhhcC
Q 043302            7 ITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDC---VKNKIPLPNVTSKILSKVINLLTVSS   64 (71)
Q Consensus         7 i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~---~~~~Ipl~~V~~~~L~kViewc~~h~   64 (71)
                      +.|.- +++.|..-+.+ |..|.-++.|+...-   ....|.|..|++.+|+.+++|+...+
T Consensus        39 v~L~v-~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~   99 (571)
T KOG4441|consen   39 VTLLV-GDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGK   99 (571)
T ss_pred             EEEEE-CCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcce
Confidence            34444 44888887777 677999999997532   35789999999999999999987543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	71
2p1m_A	160	Tir1-ask1 Complex Structure Length = 160		2e-17
1p22_B	145	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-05
1fqv_B	149	Insights Into Scf Ubiquitin Ligases From The Struct		4e-05
3l2o_A	149	Structure-Based Mechanism Of Dimerization-Dependent		4e-05
1ldk_D	133	Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu		5e-05
1fs1_B	141	Insights Into Scf Ubiquitin Ligases From The Struct		5e-05
2ast_A	159	Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len		1e-04
2e31_B	166	Structural Basis For Selection Of Glycosylated Subs		1e-04

>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 46/53 (86%)
Query: 5  KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
          KKI LKS DG++F+V+E VALESQTI HM+ DDCV N +PLPNVTSKIL+KVI
Sbjct: 4  KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVI 56

>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 7  ITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSSTS 66
          I L+S DG+ F+VD  +A +S TI+ M+ +D   + +PLPNV + IL KVI   T     
Sbjct: 4  IKLQSSDGEIFEVDVEIAKQSVTIKTML-EDLGMDPVPLPNVNAAILKKVIQWCTHHKDD 62
Query: 67 KP 68
           P
Sbjct: 63 PP 64

>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 7  ITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLT 61
          I L+S DG+ F+VD  +A +S TI+ M+ +D   + +PLPNV + IL KVI   T
Sbjct: 4  IKLQSSDGEIFEVDVEIAKQSVTIKTML-EDLGMDPVPLPNVNAAILKKVIQWCT 57

>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 7  ITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLT 61
          I L+S DG+ F+VD  +A +S TI+ M+ +D   + +PLPNV + IL KVI   T
Sbjct: 4  IKLQSSDGEIFEVDVEIAKQSVTIKTML-EDLGMDPVPLPNVNAAILKKVIQWCT 57

>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 133

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 7  ITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLT 61
          I L+S DG+ F+VD  +A +S TI+ M+ +D   + +PLPNV + IL KVI   T
Sbjct: 3  IKLQSSDGEIFEVDVEIAKQSVTIKTML-EDLGMDPVPLPNVNAAILKKVIQWCT 56

>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 7  ITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLT 61
          I L+S DG+ F+VD  +A +S TI+ M+ +D   + +PLPNV + IL KVI   T
Sbjct: 4  IKLQSSDGEIFEVDVEIAKQSVTIKTML-EDLGMDPVPLPNVNAAILKKVIQWCT 57

>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 11/63 (17%)
Query: 7  ITLKSLDGKAFKVDEVVALESQTIEHMI--------GDDCVKNKIPLPNVTSKILSKVIN 58
          I L+S DG+ F+VD  +A +S TI+ M+        GDD   + +PLPNV + IL KVI 
Sbjct: 7  IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDD---DPVPLPNVNAAILKKVIQ 63
Query: 59 LLT 61
            T
Sbjct: 64 WCT 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	71
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	4e-17
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	2e-16
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	7e-16
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	5e-15
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	1e-13
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	4e-13
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	1e-12

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99

 Score = 67.8 bits (166), Expect = 4e-17
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV--KNKIPLPNVTSKILSKVIN 58
          MS    +TL S D K +++    A+ S T++ MI       K +I L    S IL K + 
Sbjct: 1  MSQ-DFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVE 59

Query: 59 LLT 61
           L 
Sbjct: 60 YLN 62

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112

 Score = 66.3 bits (162), Expect = 2e-16
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 5  KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV-----KNKIPLPNVTSKILSKVINL 59
            + L S DG  F V    AL S TI+ M+           N++    + S +LSKV   
Sbjct: 17 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMY 76

Query: 60 LT 61
           T
Sbjct: 77 FT 78

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160

 Score = 66.0 bits (160), Expect = 7e-16
 Identities = 41/61 (67%), Positives = 48/61 (78%), Gaps = 1/61 (1%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLL 60
          MS  KKI LKS DG++F+V+E VALESQTI HM+ DDCV N +PLPNVTSKIL+KVI   
Sbjct: 1  MSA-KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYC 59

Query: 61 T 61
           
Sbjct: 60 K 60

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Length = 96

 Score = 62.4 bits (152), Expect = 5e-15
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 7  ITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV-----KNKIPLPNVTSKILSKVINLLT 61
          + L S DG  F V    AL S TI+ M+           N++    + S +LSKV    T
Sbjct: 3  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 62

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141

 Score = 60.1 bits (145), Expect = 1e-13
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 6  KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLT 61
           I L+S DG+ F+VD  +A +S TI+ M+ D  + + +PLPNV + IL KVI   T
Sbjct: 3  SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGM-DPVPLPNVNAAILKKVIQWCT 57

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169

 Score = 58.3 bits (140), Expect = 1e-12
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGD-------DCVKNKIPLPNVTSKIL 53
          M T   + L S +G+ F VD+ +A  S  +++ + D       D  +  +P+PNV S +L
Sbjct: 4  MVT-SNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVL 62

Query: 54 SKVINLLT 61
           KVI    
Sbjct: 63 QKVIEWAE 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	99.94
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	99.93
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	99.93
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	99.93
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.9
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	99.9
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	99.89
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.86
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	97.52
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	97.39
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	97.37
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	97.34
2vpk_A	116	Myoneurin; transcription regulation, transcription	97.31
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	97.27
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	97.25
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	97.21
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	97.19
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	97.16
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	97.07
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	97.02
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	96.98
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	96.9
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	96.48
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	96.44
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	96.33
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	96.22
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	95.95
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	93.96

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=99.94  E-value=3.5e-28  Score=144.26  Aligned_cols=65  Identities=31%  Similarity=0.398  Sum_probs=59.2

Q ss_pred             CCCCceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCC--CCcccCCCCCHHHHHHHHHHhhhcCCC
Q 043302            1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV--KNKIPLPNVTSKILSKVINLLTVSSTS   66 (71)
Q Consensus         1 ms~~~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~--~~~Ipl~~V~~~~L~kViewc~~h~~d   66 (71)
                      |+ +++|+|+|+||++|+|++++|++|+||++|+++.+.  +++||||+|++.+|+||||||+||+++
T Consensus         1 m~-~~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~   67 (99)
T 1hv2_A            1 MS-QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKY   67 (99)
T ss_dssp             CC-CSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             CC-CcEEEEEecCCCEEEECHHHHHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhccc
Confidence            66 569999999999999999999999999999998432  379999999999999999999999954

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=99.93  E-value=2.3e-26  Score=147.11  Aligned_cols=67  Identities=30%  Similarity=0.387  Sum_probs=58.3

Q ss_pred             CCCCceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCC-----C--CcccCCCCCHHHHHHHHHHhhhcCCCCC
Q 043302            1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV-----K--NKIPLPNVTSKILSKVINLLTVSSTSKP   68 (71)
Q Consensus         1 ms~~~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~-----~--~~Ipl~~V~~~~L~kViewc~~h~~d~p   68 (71)
                      || +++|+|+|+||++|+|++++|++|+||++||++.+.     +  ++||||+|++.+|+|||+||+||++++|
T Consensus         4 m~-~~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~   77 (169)
T 3v7d_A            4 MV-TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNF   77 (169)
T ss_dssp             ---CCEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred             CC-CCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCC
Confidence            66 479999999999999999999999999999998653     3  7899999999999999999999999864

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=99.93  E-value=1.3e-26  Score=140.27  Aligned_cols=64  Identities=30%  Similarity=0.336  Sum_probs=56.4

Q ss_pred             CCceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCC-----CCcccCCCCCHHHHHHHHHHhhhcCCC
Q 043302            3 THKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV-----KNKIPLPNVTSKILSKVINLLTVSSTS   66 (71)
Q Consensus         3 ~~~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~-----~~~Ipl~~V~~~~L~kViewc~~h~~d   66 (71)
                      ++++|+|+|+||++|+|++++|++|+||++||++.+.     +++||||+|++.+|+||||||+||+++
T Consensus        15 ~~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~   83 (112)
T 1vcb_B           15 DAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRY   83 (112)
T ss_dssp             --CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhc
Confidence            3579999999999999999999999999999998643     269999999999999999999999864

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=99.93  E-value=1.7e-26  Score=136.29  Aligned_cols=62  Identities=31%  Similarity=0.351  Sum_probs=55.7

Q ss_pred             ceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCC-----CCcccCCCCCHHHHHHHHHHhhhcCCC
Q 043302            5 KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV-----KNKIPLPNVTSKILSKVINLLTVSSTS   66 (71)
Q Consensus         5 ~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~-----~~~Ipl~~V~~~~L~kViewc~~h~~d   66 (71)
                      ++|+|+|+||++|+|++++|++|++|++|+++.|.     +++||||+|++.+|+||||||+||+++
T Consensus         1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~   67 (96)
T 2fnj_C            1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRY   67 (96)
T ss_dssp             CEEEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHcccc
Confidence            47999999999999999999999999999998543     269999999999999999999999854

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.90  E-value=1.9e-24  Score=127.17  Aligned_cols=62  Identities=31%  Similarity=0.359  Sum_probs=55.5

Q ss_pred             eEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCC-----CCcccCCCCCHHHHHHHHHHhhhcCCCC
Q 043302            6 KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV-----KNKIPLPNVTSKILSKVINLLTVSSTSK   67 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~-----~~~Ipl~~V~~~~L~kViewc~~h~~d~   67 (71)
                      +|+|+|+||++|+|++++|.+|++|++|+++.|.     +++||||+|++.+|+|||+||+||+++.
T Consensus         3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~   69 (97)
T 4ajy_C            3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYT   69 (97)
T ss_dssp             EEEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccC
Confidence            7999999999999999999999999999998542     5799999999999999999999997543

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=99.90  E-value=2.3e-24  Score=134.10  Aligned_cols=62  Identities=42%  Similarity=0.582  Sum_probs=58.1

Q ss_pred             eEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcCCCCC
Q 043302            6 KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSSTSKP   68 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~~d~p   68 (71)
                      .|+|+|+||++|+|++++|++|++|++|+++.| +++||||+|++.+|+|||+||+||+++++
T Consensus         3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~   64 (141)
T 1fs1_B            3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDDPP   64 (141)
T ss_dssp             EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTCC-
T ss_pred             eEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcC-CCceecCCcCHHHHHHHHHHHHHhccCCC
Confidence            599999999999999999999999999999866 78999999999999999999999998764

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=99.89  E-value=5.8e-25  Score=139.21  Aligned_cols=67  Identities=61%  Similarity=0.866  Sum_probs=29.9

Q ss_pred             CCCCceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcCCCCC
Q 043302            1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSSTSKP   68 (71)
Q Consensus         1 ms~~~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~~d~p   68 (71)
                      |+ +++|+|+|+||++|+|++++|++|++|++|+++.+.+++||||+|++.+|+|||+||+||+.++|
T Consensus         1 ~~-~~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~   67 (160)
T 2p1m_A            1 MS-AKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAA   67 (160)
T ss_dssp             --------CCC---------CHHHHTCTTTC------------CCTTSCHHHHHHHHHC---------
T ss_pred             CC-CCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCC
Confidence            44 56899999999999999999999999999999887778999999999999999999999998753

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=97.52  E-value=0.00083  Score=38.18  Aligned_cols=60  Identities=13%  Similarity=0.189  Sum_probs=48.4

Q ss_pred             eEEEEeCCC---CEEEEeHHHH-HHhHHHHHHhhCCCC--CCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302            6 KITLKSLDG---KAFKVDEVVA-LESQTIEHMIGDDCV--KNKIPLPNVTSKILSKVINLLTVSST   65 (71)
Q Consensus         6 ~i~L~SsDg---~~f~v~~~~a-~~S~~i~~ml~~~~~--~~~Ipl~~V~~~~L~kViewc~~h~~   65 (71)
                      -++|+..+|   +.|.+-+.+. ..|..++.|+.+...  ...|.|+++++.+++.+++|+..-.-
T Consensus        10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~   75 (109)
T 2vkp_A           10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEI   75 (109)
T ss_dssp             CEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCC
T ss_pred             cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCc
Confidence            578888876   9999999995 589999999986421  27899999999999999999987544

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=97.39  E-value=0.00082  Score=39.63  Aligned_cols=56  Identities=16%  Similarity=0.352  Sum_probs=46.9

Q ss_pred             eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCCCCCcccCC-CCCHHHHHHHHHHhhhc
Q 043302            6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDCVKNKIPLP-NVTSKILSKVINLLTVS   63 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~~~~~Ipl~-~V~~~~L~kViewc~~h   63 (71)
                      -++|+. +|+.|.+-+.+. ..|..++.|+... ....|.|| +++..+++.+++|+.-.
T Consensus        35 Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~-~~~~i~l~~~~~~~~f~~ll~~iYtg   92 (129)
T 3ga1_A           35 DVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS-RSAVVELPAAVQPQSFQQILSFCYTG   92 (129)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC-CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred             ceEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC-CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence            356665 799999999874 5799999999876 56789998 99999999999998754

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=97.37  E-value=0.0011  Score=38.56  Aligned_cols=58  Identities=22%  Similarity=0.319  Sum_probs=47.8

Q ss_pred             eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302            6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSST   65 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~~   65 (71)
                      -++|+. +|+.|.+-+.+ |..|..++.|+.... ...|.|+++++.+++.+++|+.--+-
T Consensus        26 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~-~~~i~l~~~~~~~f~~ll~~iYtg~~   84 (119)
T 3b84_A           26 DATLDV-GGLVFKAHWSVLACCSHFFQSLYGDGS-GGSVVLPAGFAEIFGLLLDFFYTGHL   84 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTTT-CCCEEECGGGHHHHHHHHHHHHHSCC
T ss_pred             ceEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCCC-CCeEEeCCCCHHHHHHHHHHHcCCCC
Confidence            356664 68999999997 557999999998653 67899999999999999999986544

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=97.34  E-value=0.00071  Score=40.38  Aligned_cols=58  Identities=22%  Similarity=0.319  Sum_probs=46.1

Q ss_pred             eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302            6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSST   65 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~~   65 (71)
                      -++|+. +|+.|.+-+.+ |..|..++.|+.... ...|.|++++..+++.+++|+...+-
T Consensus        27 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~-~~~i~l~~~~~~~f~~lL~fiYtg~~   85 (135)
T 2yy9_A           27 DATLDV-GGLVFKAHWSVLACCSHFFQRIYGDGT-GGSVVLPAGFAEIFGLLLDFFYTGHL   85 (135)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHTCC-----CCEEECGGGHHHHHHHHHHHHHSCC
T ss_pred             ceEEEE-CCEEEehHHHHHHHhCHHHHHHHcCCC-CCeEEeCCCCHHHHHHHHHHHhCCCC
Confidence            366665 68999999997 667999999997643 57799999999999999999987554

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=97.31  E-value=0.0031  Score=36.31  Aligned_cols=58  Identities=17%  Similarity=0.183  Sum_probs=46.4

Q ss_pred             eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCCCCCcccCC--CCCHHHHHHHHHHhhhcCC
Q 043302            6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDCVKNKIPLP--NVTSKILSKVINLLTVSST   65 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~~~~~Ipl~--~V~~~~L~kViewc~~h~~   65 (71)
                      -++|+. +|+.|.+-+.+ +..|..++.|+... ....|.|+  ++++.+++.+++|+..-+-
T Consensus        24 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~-~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~   84 (116)
T 2vpk_A           24 DCTIVI-GEFQFKAHRNVLASFSEYFGAIYRST-SENNVFLDQSQVKADGFQKLLEFIYTGTL   84 (116)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTC-CCSCEECCTTTCCHHHHHHHHHHHHHSCC
T ss_pred             cEEEEE-CCEEEeccHHHHhhcCHHHHHHHcCC-CCCeEEeecCCCCHHHHHHHHHHHcCCCc
Confidence            356665 58999999998 47899999999876 34556666  9999999999999986544

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=97.27  E-value=0.0016  Score=37.71  Aligned_cols=59  Identities=14%  Similarity=0.268  Sum_probs=47.1

Q ss_pred             eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCC---CCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302            6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDC---VKNKIPLPNVTSKILSKVINLLTVSST   65 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~---~~~~Ipl~~V~~~~L~kViewc~~h~~   65 (71)
                      -++|+. +|+.|.+-+.+. ..|..++.|+.+..   ....|.|++++..+++.+++|+..-.-
T Consensus        27 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~   89 (120)
T 2if5_A           27 DVVILV-EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATL   89 (120)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCC
T ss_pred             CeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCC
Confidence            466665 689999999985 56999999998652   347899999999999999999986543

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=97.25  E-value=0.0014  Score=38.16  Aligned_cols=56  Identities=13%  Similarity=0.306  Sum_probs=46.6

Q ss_pred             eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcC
Q 043302            6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSS   64 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~   64 (71)
                      -++|+. +|+.|.+-+.+. ..|...+.|+...  ...|.|+++++.+++.+++|+.--+
T Consensus        33 Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~--~~~i~l~~~~~~~f~~~l~~~Ytg~   89 (116)
T 3fkc_A           33 DVTVIV-EDRKFRAHKNILSASSTYFHQLFSVA--GQVVELSFIRAEIFAEILNYIYSSK   89 (116)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHTTSC
T ss_pred             eEEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHhhcCCC
Confidence            356664 689999998884 7799999999764  5789999999999999999987543

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=97.21  E-value=0.0023  Score=37.29  Aligned_cols=57  Identities=14%  Similarity=0.289  Sum_probs=47.7

Q ss_pred             eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302            6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSST   65 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~~   65 (71)
                      -++|+. +|+.|.+-+.+ +..|...+.|+...  ...|.|+++++.+++.+++|+..-+-
T Consensus        30 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~~   87 (121)
T 1buo_A           30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHRN--SQHYTLDFLSPKTFQQILEYAYTATL   87 (121)
T ss_dssp             CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred             CEEEEE-CCEEEehhHHHHhhcCHHHHHHHcCC--CcEEEeCCCCHHHHHHHHHhhcCCCc
Confidence            466665 68999999998 57899999999763  56899999999999999999986544

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=97.19  E-value=0.0026  Score=37.06  Aligned_cols=56  Identities=20%  Similarity=0.265  Sum_probs=46.3

Q ss_pred             eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCC-CCCcccCCC-CCHHHHHHHHHHhhh
Q 043302            6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDC-VKNKIPLPN-VTSKILSKVINLLTV   62 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~-~~~~Ipl~~-V~~~~L~kViewc~~   62 (71)
                      -++|+. +|+.|.+-+.+ |..|...+.|+.... ....|.+++ ++..+++.+++|+..
T Consensus        34 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYt   92 (125)
T 3ohu_A           34 DVTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYT   92 (125)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTT
T ss_pred             ceEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcC
Confidence            366664 68999999988 557999999998754 356889998 999999999999874

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=97.16  E-value=0.002  Score=39.06  Aligned_cols=59  Identities=15%  Similarity=0.359  Sum_probs=48.6

Q ss_pred             eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCC---CCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302            6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDC---VKNKIPLPNVTSKILSKVINLLTVSST   65 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~---~~~~Ipl~~V~~~~L~kViewc~~h~~   65 (71)
                      .++|+. +|+.|.+.+.+ +..|..++.|+....   ....|.|++++..+++.+++|+....-
T Consensus        36 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~   98 (172)
T 3htm_A           36 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA   98 (172)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred             ceEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCC
Confidence            366665 68999999998 467999999998653   247899999999999999999986544

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=97.07  E-value=0.0074  Score=35.19  Aligned_cols=59  Identities=14%  Similarity=0.233  Sum_probs=48.0

Q ss_pred             eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCCC--CCcccC-CCCCHHHHHHHHHHhhhcCC
Q 043302            6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDCV--KNKIPL-PNVTSKILSKVINLLTVSST   65 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~~--~~~Ipl-~~V~~~~L~kViewc~~h~~   65 (71)
                      -++|+. +|+.|.+-+.+. ..|..++.|+.....  ...|.| ++++..+++.+++|+.--.-
T Consensus        31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~   93 (127)
T 1r29_A           31 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRL   93 (127)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCC
T ss_pred             CEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCc
Confidence            466665 588999999985 689999999986532  477899 89999999999999976443

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=97.02  E-value=0.0022  Score=37.86  Aligned_cols=59  Identities=14%  Similarity=0.339  Sum_probs=48.5

Q ss_pred             eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCC---CCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302            6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDC---VKNKIPLPNVTSKILSKVINLLTVSST   65 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~---~~~~Ipl~~V~~~~L~kViewc~~h~~   65 (71)
                      .++|+. +|+.|.+.+.+. ..|..++.|+....   ....|.|++++..+++.+++|+...+-
T Consensus        27 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~   89 (145)
T 4eoz_A           27 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA   89 (145)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred             ceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc
Confidence            466665 688999999885 67999999998753   237899999999999999999986554

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=96.98  E-value=0.0066  Score=36.56  Aligned_cols=58  Identities=16%  Similarity=0.257  Sum_probs=47.0

Q ss_pred             eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCC-----CCCcccCCCCCHHHHHHHHHHhhhcC
Q 043302            6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDC-----VKNKIPLPNVTSKILSKVINLLTVSS   64 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~-----~~~~Ipl~~V~~~~L~kViewc~~h~   64 (71)
                      -++|+. +|+.|.+-+.+. ..|..++.|+....     ....|.|++++..+++.+++|+.--.
T Consensus        49 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~  112 (144)
T 2ppi_A           49 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ  112 (144)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSC
T ss_pred             ceEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCC
Confidence            366665 689999999984 47999999997642     35789999999999999999997543

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=96.90  E-value=0.0071  Score=35.07  Aligned_cols=58  Identities=24%  Similarity=0.290  Sum_probs=47.2

Q ss_pred             eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcCCC
Q 043302            6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSSTS   66 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~~d   66 (71)
                      .++|+. +|+.|.+-+.+ +..|...+.|+.+  ....|.|++++..+++.+++|+.--+-+
T Consensus        29 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~--~~~~i~l~~~~~~~f~~ll~~~Ytg~~~   87 (119)
T 2q81_A           29 DCTFVV-DGVHFKAHKAVLAACSEYFKMLFVD--QKDVVHLDISNAAGLGQVLEFMYTAKLS   87 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHH--CCSGGGGGGCCHHHHHHHHHHHHHSCCC
T ss_pred             ceEEEE-CCEEEehhHHHHHHcCHHHHHHHcC--CCCEEEeCCCCHHHHHHHHHHHcCCCCc
Confidence            466664 68999999998 4579999999986  3567889999999999999999865443

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=96.48  E-value=0.015  Score=33.84  Aligned_cols=57  Identities=25%  Similarity=0.307  Sum_probs=44.9

Q ss_pred             eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCC-CCCcccCC-CCCHHHHHHHHHHhhhc
Q 043302            6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDC-VKNKIPLP-NVTSKILSKVINLLTVS   63 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~-~~~~Ipl~-~V~~~~L~kViewc~~h   63 (71)
                      -++|+. +|+.|.+-+.+ |..|...+.|+.+.. ....|.++ +|+...++.+++|+..-
T Consensus        31 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg   90 (124)
T 2ihc_A           31 DVTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTA   90 (124)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHS
T ss_pred             CEEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCC
Confidence            356655 58999999988 457999999998653 23578885 89999999999998753

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=96.44  E-value=0.033  Score=32.96  Aligned_cols=59  Identities=20%  Similarity=0.258  Sum_probs=47.2

Q ss_pred             eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCCC-CCcccCC-CCCHHHHHHHHHHhhhcCC
Q 043302            6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDCV-KNKIPLP-NVTSKILSKVINLLTVSST   65 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~~-~~~Ipl~-~V~~~~L~kViewc~~h~~   65 (71)
                      -++|+. +|+.|.+-+.+. ..|..++.|+..... ...|.|+ +|+...++.+++|+.--+-
T Consensus        38 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~   99 (138)
T 2z8h_A           38 DVTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKL   99 (138)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCC
T ss_pred             CeEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCc
Confidence            356665 589999999885 679999999987543 3678886 8999999999999986543

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=96.33  E-value=0.014  Score=38.68  Aligned_cols=58  Identities=16%  Similarity=0.362  Sum_probs=46.7

Q ss_pred             eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCC---CCCcccCCCCCHHHHHHHHHHhhhcC
Q 043302            6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDC---VKNKIPLPNVTSKILSKVINLLTVSS   64 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~---~~~~Ipl~~V~~~~L~kViewc~~h~   64 (71)
                      .++|+. +|+.|.+.+.+ |.+|...+.|+....   ....|.|+++++.+++.+++|+....
T Consensus       176 Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~  237 (312)
T 3hqi_A          176 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK  237 (312)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSC
T ss_pred             ceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCC
Confidence            456665 78999999988 577999999997642   34789999999999999999997643

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=96.22  E-value=0.017  Score=37.37  Aligned_cols=59  Identities=15%  Similarity=0.250  Sum_probs=45.0

Q ss_pred             eEEEEeCCCCEEEEeHHHHH-HhHHHHHHhhCCC-----CCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302            6 KITLKSLDGKAFKVDEVVAL-ESQTIEHMIGDDC-----VKNKIPLPNVTSKILSKVINLLTVSST   65 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a~-~S~~i~~ml~~~~-----~~~~Ipl~~V~~~~L~kViewc~~h~~   65 (71)
                      -++|+. +|+.|.+-+.+.. .|...+.|+....     ....|+|+++++.+++.+++|+..-+-
T Consensus        33 Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~   97 (256)
T 3hve_A           33 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQI   97 (256)
T ss_dssp             CEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCC
T ss_pred             ceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCC
Confidence            466665 6899999999865 5999999997542     246899999999999999999986543

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=95.95  E-value=0.0076  Score=39.51  Aligned_cols=58  Identities=14%  Similarity=0.255  Sum_probs=43.3

Q ss_pred             eEEEEeC--CCCEEEEeHHHHH-HhHHHHHHhhCCC---CCCcccCC------CCCHHHHHHHHHHhhhc
Q 043302            6 KITLKSL--DGKAFKVDEVVAL-ESQTIEHMIGDDC---VKNKIPLP------NVTSKILSKVINLLTVS   63 (71)
Q Consensus         6 ~i~L~Ss--Dg~~f~v~~~~a~-~S~~i~~ml~~~~---~~~~Ipl~------~V~~~~L~kViewc~~h   63 (71)
                      -++|+..  ||+.|.+-+.+.. .|...+.|+.+..   ....|.|+      +|++.+++.+++|+...
T Consensus        34 Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg  103 (279)
T 3i3n_A           34 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG  103 (279)
T ss_dssp             CEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHS
T ss_pred             CeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcC
Confidence            3677765  7999999999855 6999999987642   24678888      89999999999998753

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=93.96  E-value=0.034  Score=32.49  Aligned_cols=50  Identities=10%  Similarity=0.147  Sum_probs=38.2

Q ss_pred             eEEEEeCCCCEEEEeHHHHHH-hHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhh
Q 043302            6 KITLKSLDGKAFKVDEVVALE-SQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTV   62 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a~~-S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~   62 (71)
                      -++|+. +|+.|.+-+.+... |...+.      ....|.|++|++.+++.+++|+.-
T Consensus        32 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~------~~~~i~l~~v~~~~f~~ll~fiYt   82 (119)
T 3m5b_A           32 DTLITV-GSQEFPAHSLVLAGVSQQLGR------RGQWALGEGISPSTFAQLLNFVYG   82 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHTTCGGGCC------CEEEECCSSCCHHHHHHHHHHHTT
T ss_pred             ceEEEE-CCEEEeeEHHHHHHcCHHHhc------CCCEEEeCCCCHHHHHHHHHHHcC
Confidence            356665 69999999988543 655442      246789999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	71
d1fs1b2	61	d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Sk	5e-16
d1nexa2	72	d.42.1.1 (A:4-103) Centromere DNA-binding protein	2e-14
d2c9wc1	96	d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens	5e-14
d1hv2a_	99	d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy	2e-13

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (153), Expect = 5e-16
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 6  KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
           I L+S DG+ F+VD  +A +S TI+ M+ D  + + +PLPNV + IL KVI
Sbjct: 2  SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGM-DPVPLPNVNAAILKKVI 52

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (144), Expect = 2e-14
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 6  KITLKSLDGKAFKVDEVVALESQTIEHMIGD-------DCVKNKIPLPNVTSKILSKVI 57
           + L S +G+ F VD+ +A  S  +++ + D       D  +  +P+PNV S +L KVI
Sbjct: 2  NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVI 60

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (142), Expect = 5e-14
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 7  ITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV-----KNKIPLPNVTSKILSKVI 57
          + L S DG  F V    AL S TI+ M+           N++    + S +LSKV 
Sbjct: 3  VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVC 58

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (138), Expect = 2e-13
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 1  MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV--KNKIPLPNVTSKILSKVI 57
          MS    +TL S D K +++    A+ S T++ MI       K +I L    S IL K +
Sbjct: 1  MSQ-DFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAV 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	71
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	99.96
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	99.96
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	99.93
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	97.21
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	96.94
d1gg2g_	54	Transducin (heterotrimeric G protein), gamma chain	88.57

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.1e-30  Score=146.37  Aligned_cols=64  Identities=30%  Similarity=0.373  Sum_probs=55.8

Q ss_pred             eEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCC-------CCcccCCCCCHHHHHHHHHHhhhcCCCCCC
Q 043302            6 KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV-------KNKIPLPNVTSKILSKVINLLTVSSTSKPF   69 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~-------~~~Ipl~~V~~~~L~kViewc~~h~~d~p~   69 (71)
                      .|+|+|+||++|+|++++|++|+||++||++.|.       .++||||+|+|++|+||||||+||++|+|.
T Consensus         2 ~I~L~SsDg~~F~v~~~~a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~H~~dp~P   72 (72)
T d1nexa2           2 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFP   72 (72)
T ss_dssp             EEEEECTTSCEEEEEHHHHTTSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHHHTTTCCCC
T ss_pred             eeEEEeCCCCEEEecHHHHHHHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHHccCCCCC
Confidence            6999999999999999999999999999987652       258999999999999999999999999974

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.5e-30  Score=140.58  Aligned_cols=61  Identities=41%  Similarity=0.550  Sum_probs=57.3

Q ss_pred             ceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcCCC
Q 043302            5 KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSSTS   66 (71)
Q Consensus         5 ~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~~d   66 (71)
                      +.|+|+|+||++|+|++++|++|++|++|+++.+ .++||||+|+|++|+||+|||+||++|
T Consensus         1 p~I~L~SsDg~~f~v~~~~a~~S~tI~~ml~~~~-~~~Ipl~~V~s~iL~kVieyc~~H~~d   61 (61)
T d1fs1b2           1 PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDD   61 (61)
T ss_dssp             CEEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEecCCCEEEecHHHHHHhHHHHHHHhcCC-CCCcccCCcCHHHHHHHHHHHHHccCC
Confidence            4799999999999999999999999999999865 468999999999999999999999986

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4.6e-27  Score=137.90  Aligned_cols=65  Identities=31%  Similarity=0.403  Sum_probs=59.9

Q ss_pred             CCCCceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCC--CCCcccCCCCCHHHHHHHHHHhhhcCCC
Q 043302            1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDC--VKNKIPLPNVTSKILSKVINLLTVSSTS   66 (71)
Q Consensus         1 ms~~~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~--~~~~Ipl~~V~~~~L~kViewc~~h~~d   66 (71)
                      || +++|+|+|+||++|.|++++|++|+||++||++.+  .+++||||+|+|++|+|||+||+||+.+
T Consensus         1 m~-~~~v~L~SsDg~~f~V~~~~A~~S~tI~~ml~~~~~e~~~~Ipl~~V~s~iL~kViey~~~h~~~   67 (99)
T d1hv2a_           1 MS-QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKY   67 (99)
T ss_dssp             CC-CSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             CC-CCeEEEEcCCCCEEEeeHHHHHHhHHHHHHHHccCCCCcCccccCCCChHHHHHHHHHHHHhhhC
Confidence            66 56999999999999999999999999999999875  3578999999999999999999999864

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2e-26  Score=134.69  Aligned_cols=62  Identities=31%  Similarity=0.357  Sum_probs=52.1

Q ss_pred             eEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCC-----CCCcccCCCCCHHHHHHHHHHhhhcCCCC
Q 043302            6 KITLKSLDGKAFKVDEVVALESQTIEHMIGDDC-----VKNKIPLPNVTSKILSKVINLLTVSSTSK   67 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~-----~~~~Ipl~~V~~~~L~kViewc~~h~~d~   67 (71)
                      +|+|+|+||++|+|++++|++|++|++||++.+     .+++||||+|+|++|+||||||+||+.++
T Consensus         2 ~i~L~SsDg~~f~V~~~~A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~   68 (96)
T d2c9wc1           2 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYT   68 (96)
T ss_dssp             EEEEECTTCCEEEEEHHHHTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCc
Confidence            699999999999999999999999999998753     24789999999999999999999986654

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00091  Score=38.23  Aligned_cols=56  Identities=14%  Similarity=0.301  Sum_probs=46.3

Q ss_pred             eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcC
Q 043302            6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSS   64 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~   64 (71)
                      -++|.. +|++|.+-+.+ |..|..+++|+...  ...+.+++|++.+++.+++|+..-+
T Consensus        30 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~lf~~~--~~~i~~~~v~~~~f~~ll~~~Ytg~   86 (121)
T d1buoa_          30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHRN--SQHYTLDFLSPKTFQQILEYAYTAT   86 (121)
T ss_dssp             CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHHHSC
T ss_pred             eEEEEE-CCEEEEEEHHHhcccChhhhhhccCc--cceeecCCCCHHHHHHHHHheEccc
Confidence            366665 78899999986 67899999999754  4678899999999999999997544

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0024  Score=36.08  Aligned_cols=58  Identities=10%  Similarity=0.145  Sum_probs=44.8

Q ss_pred             eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCCC---CCcccCCCCCHHHHHHHHHHhhhcC
Q 043302            6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDCV---KNKIPLPNVTSKILSKVINLLTVSS   64 (71)
Q Consensus         6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~~---~~~Ipl~~V~~~~L~kViewc~~h~   64 (71)
                      -++|+. +|+.|.+.+.+. ..|..++.|+.+...   ...+-+++|++..++.+++|+.--+
T Consensus        27 Dv~l~v-~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~   88 (122)
T d1r29a_          27 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSR   88 (122)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred             EEEEEE-CCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCe
Confidence            366664 788999999885 579999999976532   2334467999999999999997543

>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Transducin (heterotrimeric G protein), gamma chain
family: Transducin (heterotrimeric G protein), gamma chain
domain: Transducin (heterotrimeric G protein), gamma chain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.57  E-value=0.13  Score=25.63  Aligned_cols=21  Identities=14%  Similarity=0.281  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHhhhcCCCCCCC
Q 043302           50 SKILSKVINLLTVSSTSKPFA   70 (71)
Q Consensus        50 ~~~L~kViewc~~h~~d~p~~   70 (71)
                      |.+.+-++.||+.|..++|+.
T Consensus        24 S~aa~~l~~y~e~~~~~Dpll   44 (54)
T d1gg2g_          24 SKAAADLMAYCEAHAKEDPLL   44 (54)
T ss_dssp             HHHHHHHHHHHHHHGGGCTTT
T ss_pred             HHHHHHHHHHHHhcCcCCCCc
Confidence            778888999999999999985