Citrus Sinensis ID: 043303

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------164

MRTRFLNTDYFTTSSSSTPIETLNFLSLPIPHVSQSLLSVGKDDHLRFDSVLDVSLDIDQLPIHSALSKFFFDVIPQAIDVDFHDFEDLRFPISIVGGDEKESDIIDEEKEEESKRTSRLEALEVEPPKKDNETAMDDQNTHNFEVIQFETPEPAMFLENGSLYEKEEIWIVSEVPEIDNNLDMLTPGLAIQYLNEVRESVYSFDVVAFDYHVEQEASNLEDDGSFPDQMLCQSYMFPLLEVDEISRGTLEIPSTEDELLSILKKQELQHWTQKDNMLISSKEILGSLEYDILDVLLDHSSSKQCLESEMASQDMFHEMDFIGMVETSQLQENSKFHQLMEDSDCLLSMSPVIFEEFEISNVDLSKLFEVFFSTQAPSEPVACAWMFREDMNFKNFNELIIIQELALIDDTFKSLPTPVFSEKIRSVYAVVEEKLADLKPQPLSASDGIYLDWHLLDGDECSHKFFCYDQKILQEIDLHNIDFDLESSDDDKLVSTFIFSDNALSGPNMEGCEESLNTDFLGISGLYGHVMGVSSGKLFENGSPKPGNAEQSSERNAERVSLFFKSTSQFNDLDFFLNPQKPITGENCEFAVKEFDALSPSSNSMGAGLSSDVFQQWDVTLYKVKLSDDILALIDIFKKSYLAIVHNETELSSFVTSDDFKLLSLPKQRLMDCINRKRFQKANSHGDGNCMALITLCSIKLMAWYTCFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKIDKETSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWWSLKCLVMSMGLSCSELQNFYTHVDQPDVTKVYGSASAKMTDLPISDCLMVSHESVSASFPFKKFSLILEYGGSHGSSRISALSPKVAGLPHLHFLKVELDDSSASRALCEGLDVPENMEVELLDLLPVEDGYHMGSGEAADTIEACCMPPSVPCSQLAIESEQIQPRMMSYPVTVIVVNTQNVDKEMIVSRRSTYQKILALEKEGVQVVERDSDLPVDIIISTATCLVWYDYRNIGKKATALDEASSCLPLCVENIATNVLTLLSFTFSVCIMVFEGDTNFICTVMESSDGLYAAAASLGLDLQLFCSNSSELTDEIIVSCIGNSIKLTSGLYPKMPESETLAESFLTKFPSVNPLTAHAMLSSKGMLLELLECRHEQRIIAVKKYHVPEESTNLFSILCQSGEHEDSKSIMTDCSSSVSSGLDSDKSHLNSDSGRTQQKSIYNPDKIDILMNDFLQFEPLNQVTDGLLNPSKVFKLYDSWKDHEIFDDYQKPGSSVNELSGKKQELDFDMMMKASRVSKAYNSQIFECPRILEEINDPKFSWKDSLLGQNQGLGSAGMNNFDCHNISKTSCLQEDFIGEVVDLTSSPLSGKEFFSVPKSSSLSASVPQMENNSLMKSKIARRLSFGKNGLLHFPTAAELNSGSDIVDSGKVQRQSTQGTTDHPDAENNNDKLLLEHRKNLLDQVFVQRFAGSRGVPFQEEISHYNGTPLSKAIRSANPQPGSPWTVEFLNRIKEKSRLRQQSLPADTAAPCLGISGNLSKVTKRRSPSILEFFKYQGGSTPGKLPEKKKQKRSVNSSTLSENKMPSTSFLPTWTPVDKRSRQTLSFALNESGNQTKLVWNDGNSQSMRKKLRNQ

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccEEEEEcccccHHHHccccccccccEEEEccccccccccccccccccccccHHHHHHccEEEEEEcccccccccccccccccccccccccccccccEEEccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHcccccHHHHHHHccccHHHHHHHcccccccccccccHHHcccHHHcccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHccccccHHHHHHHHcccccccccHHHHHcccEEEcccccccccccccccccHHHHHHHHHHHHcccccccccccccEEccccccccccccccHHHHHHHHHHHccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHHccccHHHcccccccccccccccccccHHHHHcccccccEEEEEcccccccccccccEEEEEEccccccccccccccccccccccEEEEEEEcccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccEEEEEEcccccccEEEEHHHHHHHHHHHHHcccEEEEcccccccEEEEcccEEEEEEEccccccccHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHccHHHHHHHHHccEEEEEEEEcccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccHHHHHHHHHccHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHccccccccccccHHHHHHccccccccccccccccccccccccccccccccEEcEEEccccccEEEEEccccccccccccccc

cccHHEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHcccccccccccccccccccEEEcccccccccccccccEEEEccccHHHHHHcccccEEEEEEEEEcccHHHHHHHccccccccEEEEEEcccccccccccccccEccccHHHHHHEEEEEEEEcccccccccccccccccHHHHHccccccEcEEEEEcccccccccccHHHHHHHHHHHcccccccHccccEEccHHHHccccccHHHHHccccccHHccccccccHHHHHHHcEEEEcccHHHHHHccccccccccccccccccEEEEEEEEEcccHHHHHHHHHHHcccccccHHHHHHHHccccccccEEEEHHHHHHccccccccccccccHHHHccHHHHHHHHHHcccccccccccEEEccHHcccccccccccHHHHHHHHHHcccccccccEEccccEEEEEEEEcccccccccHHHccccccccccccccccccccccccHHHHcccccccccccccccccHHHHcHHHHHHcccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHHHHHcHccEEEEEcccccccccHHccEEEEEEccccccccHHHccccccccccEEEEEEEEcccHHHHHHHccccccccHHHHHHHccccHHHHcccccccccHHHHcccccccccccccEccccccccccccccEEEEEEccccccEEEEEcHHHHHHHHHHHHcccEEEEEccccccEEEEcccEEEEEEccHHcccccccccHccccHHHHHHHHHHHHHHHHHHHHccEEEEEEccHHHHHHHHHccHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccHHHHHHHHcccccHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHcccccccccEEccccccccccccccccccEcccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccEEEEcccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccEcccccccEEEccccccccccccccccccccccccccccccccHHHHEEccccccccccHHHHHHHccccHHHHHHHccccccccccEHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHccccccccccccccccccccccccccHcHHHHcEEEEEEccccccEEEEEcccccccccHHHccc

mrtrflntdyfttsssstpietlnflslpiphvsqsllsvgkddhlrfdsvldvsldidqlpihsalskfffdvipqaidvdfhdfedlrfpisivggdekesdiidEEKEEESKRTSRLealeveppkkdnetamddqnthnfeviqfetpepamflengslyekeEIWIVSevpeidnnldmltPGLAIQYLNEVRESVYSFDVVAFDYHVEQeasnleddgsfpdqmlcqsymfpllevdeisrgtleipstEDELLSILKKQELQHWTQKDNMLISSKEILGSLEYDILDVLLDhssskqcleseMASQDMFHEMDFIGMVETSQLQENSKFHQlmedsdcllsmspvifeefeisnvdlSKLFEVFfstqapsepvACAWMFRedmnfknfNELIIIQELALIddtfkslptpvfsekIRSVYAVVEEKladlkpqplsasdgiyldwhlldgdecshkffcydqKILQEIDlhnidfdlessdddklvstfifsdnalsgpnmegceeslntdflGISGLYGHvmgvssgklfengspkpgnaeqsserNAERVSLFFKstsqfndldfflnpqkpitgencEFAVKEfdalspssnsmgaglssdVFQQWDVTLYKVKLSDDILALIDIFKKSYLAIVHnetelssfvtsddfkllslpkqrlMDCINRKRfqkanshgdgnCMALITLCSIKLMAWYTCFYGIHTARLCVDKLCksqgclksrlgSLQSLVVAadgkidketsshpsLLVIQGILQSNSSQSNLKVLIVAEQSFWWSLKCLVMsmglscselqnfythvdqpdvtkvygsasakmtdlpisdclmvshesvsasfpfkKFSLILEYggshgssrisalspkvaglphlHFLKVElddssasralcegldvpenmevelldllpvedgyhmgsgeaadtieaccmppsvpcsqlaieseqiqprmmsyPVTVIVVNTQNVDKEMIVSRRSTYQKILALEKEGVqvverdsdlpvdiIISTATCLVWYDYrnigkkataldeassclplcvENIATNVLTLLSFTFSVCIMVFEGDTNFICTVMESSDGLYAAAASLGLDLQLFcsnsseltDEIIVSCIGNsikltsglypkmpesetlAESFltkfpsvnpltahAMLSSKGMLLELLECRHEQRIIAVkkyhvpeestNLFSILCqsgehedsksimtdcsssvssgldsdkshlnsdsgrtqqksiynpdkiDILMNdflqfeplnqvtdgllnpskvfklydswkdheifddyqkpgssvnelsgkkqelDFDMMMKASRVSKAYnsqifecprileeindpkfswkdsllgqnqglgsagmnnfdchnisktsclqedfigevvdltssplsgkeffsvpkssslsasvpqmennSLMKSKIARRLsfgkngllhfptaaelnsgsdivdsgkvqrqstqgttdhpdaennnDKLLLEHRKNLLDQVFVQrfagsrgvpfqeeishyngtplskairsanpqpgspwtVEFLNRIKEKSRLrqqslpadtaapclgisgnlskvtkrrspSILEFFKyqggstpgklpekkkqkrsvnsstlsenkmpstsflptwtpvdkrsRQTLSFALNesgnqtklvwndgnsqSMRKKLRNQ

mrtrflntdyfttsssstpiETLNFLSLPIPHVSQSLLSVGKDDHLRFDSVLDVSLDIDQLPIHSALSKFFFDVIPQAIDVDFHDFEDLRfpisivggdekesdiideekeeeskrtsrlealeveppkkdnetamddqnTHNFEVIQFETPEPAMFLENGSLYEKEEIWIVSEVPEIDNNLDMLTPGLAIQYLNEVRESVYSFDVVAFDYHVEQEASNLEDDGSFPDQMLCQSYMFPLLEVDEISRGTLEIPSTEDELLSILKKQELQHWTQKDNMLISSKEILGSLEYDILDVLLDHSSSKQCLESEMASQDMFHEMDFIGMVETSQLQENSKFHQLMEDSDCLLSMSPVIFEEFEISNVDLSKLFEVFFSTQAPSEPVACAWMFREDMNFKNFNELIIIQELALIDDTFKSLPTPVFSEKIRSVYAVVEEKladlkpqplsASDGIYLDWHLLDGDECSHKFFCYDQKILQEIDLHNIDFDLESSDDDKLVSTFIFSDNALSGPNMEGCEESLNTDFLGISGLYGHVMGVSSGKLFENGSpkpgnaeqsseRNAERVSLFFKSTSQFNDLDFFLNPQKPITGENCEFAVKEFDALSPSSNSMGAGLSSDVFQQWDVTLYKVKLSDDILALIDIFKKSYLAIVHNEtelssfvtsddFKLLSLPKQRLMDCINRKRFqkanshgdgnCMALITLCSIKLMAWYTCFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKIDKETSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWWSLKCLVMSMGLSCSELQNFYTHVDQPDVTKVYGSASAKMTDLPISDCLMVSHESVSASFPFKKFSLILEYGGSHGSSRISALSPKVAGLPHLHFLKVELDDSSASRALCEGLDVPENMEVELLDLLPVEDGYHMGSGEAADTIEACCMPPSVPCSQLAIESEQIQPRMMSYPVTVIVVNTQNVDKEMIVSRRSTYQKILALekegvqvverdsdlpvdIIISTATCLVWYDYRNIGKKATALDEASSCLPLCVENIATNVLTLLSFTFSVCIMVFEGDTNFICTVMESSDGLYAAAASLGLDLQLFCSNSSELTDEIIVSCIGNSIKLTSGLYPKMPESETLAESFLTKFPSVNPLTAHAMLSSKGMLLELLECRHEQRIIAVKKYHVPEESTNLFSILCQSGEHEDSKSIMTDCSSSVSSGLDSdkshlnsdsgrtqqksiynPDKIDILMNDFLQFEPLNQVTDGLLNPSKVFKLYDSWKDHEIFddyqkpgssvnelsgkkqELDFDMMMKASRVSKAYNSQIFECPRILEEINDPKFSWKDSLLGQNQGLGSAGMNNFDCHNISKTSCLQEDFIGEVVDLTSSPLSGKEFFsvpkssslsasvpqmenNSLMKSKIARRLSFGKNGLLHFPTAAELNSGSDIVDSGKVQRQstqgttdhpdaenNNDKLLLEHRKNLLDQVFVQRFAGSRGVPFQEEISHYNGTPLSKAIrsanpqpgspWTVEFLNRIKEKSRLRQqslpadtaapclgisgnlskvtkrrsPSILEFfkyqggstpgklpekkkqkrsvnsstlsenkmpstsflptwtpvdKRSRQTLSFalnesgnqtklvwndgnsqsmrkklrnq

MRTRFLNTDYFTTSSSSTPIETLNFLSLPIPHVSQSLLSVGKDDHLRFDSVLDVSLDIDQLPIHSALSKFFFDVIPQAIDVDFHDFEDLRFPISIVGGdekesdiideekeeeskRTSRLEALEVEPPKKDNETAMDDQNTHNFEVIQFETPEPAMFLENGSLYEKEEIWIVSEVPEIDNNLDMLTPGLAIQYLNEVRESVYSFDVVAFDYHVEQEASNLEDDGSFPDQMLCQSYMFPLLEVDEISRGTLEIPSTEDELLSILKKQELQHWTQKDNMLISSKEILGSLEYDILDVLLDHSSSKQCLESEMASQDMFHEMDFIGMVETSQLQENSKFHQLMEDSDCLLSMSPVIFEEFEISNVDLSKLFEVFFSTQAPSEPVACAWMFREDMNFKNFNELIIIQELALIDDTFKSLPTPVFSEKIRSVYAVVEEKLADLKPQPLSASDGIYLDWHLLDGDECSHKFFCYDQKILQEIDLHNIDFDLESSDDDKLVSTFIFSDNALSGPNMEGCEESLNTDFLGISGLYGHVMGVSSGKLFENGSPKPGNAEQSSERNAERVSLFFKSTSQFNDLDFFLNPQKPITGENCEFAVKEFDALSPSSNSMGAGLSSDVFQQWDVTLYKVKLSDDILALIDIFKKSYLAIVHNETELSSFVTSDDFKLLSLPKQRLMDCINRKRFQKANSHGDGNCMALITLCSIKLMAWYTCFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKIDKETSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWWSLKCLVMSMGLSCSELQNFYTHVDQPDVTKVYGSASAKMTDLPISDCLMVSHESVSASFPFKKFSLILEYGGSHGSSRISALSPKVAGLPHLHFLKVELDDSSASRALCEGLDVPENMevelldllpvedGYHMGSGEAADTIEACCMPPSVPCSQLAIESEQIQPRMMSYPVTVIVVNTQNVDKEMIVSRRSTYQKILALEKEGVQVVERDSDLPVDIIISTATCLVWYDYRNIGKKATALDEASSCLPLCVENIATNVLTLLSFTFSVCIMVFEGDTNFICTVMESSDGLYAAAASLGLDLQLFCSNSSELTDEIIVSCIGNSIKLTSGLYPKMPESETLAESFLTKFPSVNPLTAHAMLSSKGMLLELLECRHEQRIIAVKKYHVPEESTNLFSILCQSGEHEDSKSIMTdcsssvssgldsdksHLNSDSGRTQQKSIYNPDKIDILMNDFLQFEPLNQVTDGLLNPSKVFKLYDSWKDHEIFDDYQKPGSSVNELSGKKQELDFDMMMKASRVSKAYNSQIFECPRILEEINDPKFSWKDSLLGQNQGLGSAGMNNFDCHNISKTSCLQEDFIGEVVDLTSSPLSGKEFFsvpkssslsasvpQMENNSLMKSKIARRLSFGKNGLLHFPTAAELNSGSDIVDSGKVQRQSTQGTTDHPDAENNNDKLLLEHRKNLLDQVFVQRFAGSRGVPFQEEISHYNGTPLSKAIRSANPQPGSPWTVEFLNRIKEKSRLRQQSLPADTAAPCLGISGNLSKVTKRRSPSILEFFKYQGGSTPGKLPEKKKQKRSVNSSTLSENKMPSTSFLPTWTPVDKRSRQTLSFALNESGNQTKLVWNDGNSQSMRKKLRNQ

*********YF********IETLNFLSLPIPHVSQSLLSVGKDDHLRFDSVLDVSLDIDQLPIHSALSKFFFDVIPQAIDVDFHDFEDLRFPISIVG**********************************************FEVIQFETPEPAMFLENGSLYEKEEIWIVSEVPEIDNNLDMLTPGLAIQYLNEVRESVYSFDVVAFDYHVEQEA*******SFPDQMLCQSYMFPLLEVDEISRGTLEIPSTEDELLSILKKQELQHWTQKDNMLISSKEILGSLEYDILDVLLDH****************FHEMDFIGMVE*********FHQLMEDSDCLLSMSPVIFEEFEISNVDLSKLFEVFFSTQAPSEPVACAWMFREDMNFKNFNELIIIQELALIDDTFKSLPTPVFSEKIRSVYAVVEEKLADLKPQPLSASDGIYLDWHLLDGDECSHKFFCYDQKILQEIDLHNIDFDLESSDDDKLVSTFIFSDNALSGPNMEGCEESLNTDFLGISGLYGHVMGVS**************************SLFFKSTSQFNDLDFFLNPQKPITGENCEFAVKEFD************LSSDVFQQWDVTLYKVKLSDDILALIDIFKKSYLAIVHNETELSSFVTSDDFKLLSLPKQRLMDCINRKRFQKANSHGDGNCMALITLCSIKLMAWYTCFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKI********SLLVIQGILQSN**QSNLKVLIVAEQSFWWSLKCLVMSMGLSCSELQNFYTHVDQPDVTKVYGSASAKMTDLPISDCLMVSHESVSASFPFKKFSLILEYGGSHGSSRISALSPKVAGLPHLHFLKVELDDSSASRALCEGLDVPENMEVELLDLLPVEDGYHMGSGEAADTIEACCMPPSVPCSQLAIESEQIQPRMMSYPVTVIVVNTQNVDKEMIVSRRSTYQKILALEKEGVQVVERDSDLPVDIIISTATCLVWYDYRNIGKKATALDEASSCLPLCVENIATNVLTLLSFTFSVCIMVFEGDTNFICTVMESSDGLYAAAASLGLDLQLFCSNSSELTDEIIVSCIGNSIKLTSGLYPKM****TLAESFLTKFPSVNPLTAHAMLSSKGMLLELLECRHEQRIIAVKKYHVPEESTNLFSILC******************************************YNPDKIDILMNDFLQFEPLNQVTDGLLNPSKVFKLYDSWKDHEIFDDY*****************************KAYNSQIFECPRILEEINDPKFSWKDSLLGQNQGLGSAGMNNFDCHNISKTSCLQEDFIGEVVDLT****************************************FGKNGLLHF***************************************LLEHRKNLLDQVFVQRFAGSRGVPFQEEI**********************WTVEFL*********************CLGI**************ILEFFK********************************************************************************

*RTRFLNTDYFTTSSSSTPIETLNFLSLPIPHVSQSLLSVGKDDHLRFDSVLDVSLDIDQLPIHSALSKFFFDVIPQAIDVDFHDFEDLRFPISIVGGDEKESDIIDEEKEEES****R****EVEPPKKDNETAMDDQNTHNFEVIQFETPEPAMFLENGSLYEKEEIWIVSEVPEIDNNLDMLTPGLAIQYLNEVRESVYSFDVVAFDYHVEQEASNLEDDGSFPDQMLCQSYMFPLLEVDEISRGTLEIPSTEDELLSILKKQELQHWT****MLISSKEILGSLEYDILDVLLDHSSSKQ**ESEMASQDMFHEMDFIGMVETSQLQENSKFHQLMEDSDCLLSMSPVIFEEFEISNVDLSKLFEVFFSTQAPSEPVACAWMFREDMNFKNFNELIIIQELALIDDTFKSLPTPVFSEKIRSVYAVVEEKLADLKPQPLSASDGIYLDWHLLDGDECSHKFFCYDQKILQEIDLHNIDFDLESSDDDKLVSTFIFSDN***************************************************************STSQFNDLDFFLNPQKP*********************************QWDVTLYKVKLSDDILALIDIFKKSYLAIVHNETELS**VTSDDFKLLSLPKQRLMDCINRKRFQ***SHGDGNCMALITLCSIKLMAWYTCFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVV****************LVIQGILQSNSSQSNLKVLIVAEQSFWWSLKCLVMSMGLSCSELQNFYTHVDQPDVTKVYGSASAKMTDLPISDCLMVSHESVSASFPFKKFSLILEYGGSH************AGLPHLHFLKVELDDSSASRALCE*LDVPENMEVELLDLLP*****************************************MSYPVTVIVVNTQNVDKEMIVSRRSTYQKILALEKEGVQVVERDSDLPVDIIISTATCLVWYDYRNIGKKATALDEASSCLPLCVENIATNVLTLLSFTFSVCIMVFEGDTNFICTVMESSDGLYAAAASLGLDLQLFCSNSSELTDEIIVSCIGNSIK****************ESFLTKFPSVNPLTAHAMLSSKGMLLELLECRHEQRIIAVKKYHVPEESTNLFSILC***********************************************IDILMNDFLQFEPLN***************YDSWKDHE*F******************************VSKAYNSQIFE*************SWKDSLLGQNQ******MN**DCHNISKTSCLQEDFIGEVVDLTSSPLSGKEFFSVPKSSSLS***************************LHFPTAA********************GTTDHPDAENNNDKLLLEH*KN************************YNGT***************PWTVEFL***********************************************************************************WTPVDKRSRQTLS******GNQTKLVW*DGNS**********

********DYFTTSSSSTPIETLNFLSLPIPHVSQSLLSVGKDDHLRFDSVLDVSLDIDQLPIHSALSKFFFDVIPQAIDVDFHDFEDLRFPISIVGGDEKESD***************LEALEVEPPKKDNETAMDDQNTHNFEVIQFETPEPAMFLENGSLYEKEEIWIVSEVPEIDNNLDMLTPGLAIQYLNEVRESVYSFDVVAFDYHVEQEASNLEDDGSFPDQMLCQSYMFPLLEVDEISRGTLEIPSTEDELLSILKKQELQHWTQKDNMLISSKEILGSLEYDILDVLLDHSSSKQCLESEMASQDMFHEMDFIGMVETSQLQENSKFHQLMEDSDCLLSMSPVIFEEFEISNVDLSKLFEVFFSTQAPSEPVACAWMFREDMNFKNFNELIIIQELALIDDTFKSLPTPVFSEKIRSVYAVVEEKLADLKPQPLSASDGIYLDWHLLDGDECSHKFFCYDQKILQEIDLHNIDFDLESSDDDKLVSTFIFSDNALSGPNMEGCEESLNTDFLGISGLYGHVMGVSSGKLFENG**************AERVSLFFKSTSQFNDLDFFLNPQKPITGENCEFAVKEFDALSPSSNSMGAGLSSDVFQQWDVTLYKVKLSDDILALIDIFKKSYLAIVHNETELSSFVTSDDFKLLSLPKQRLMDCINRKRFQKANSHGDGNCMALITLCSIKLMAWYTCFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKIDKETSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWWSLKCLVMSMGLSCSELQNFYTHVDQPDVTKVYGSASAKMTDLPISDCLMVSHESVSASFPFKKFSLILEYGGSHGSSRISALSPKVAGLPHLHFLKVELDDSSASRALCEGLDVPENMEVELLDLLPVEDGYHMGSGEAADTIEACCMPPSVPCSQLAIESEQIQPRMMSYPVTVIVVNTQNVDKEMIVSRRSTYQKILALEKEGVQVVERDSDLPVDIIISTATCLVWYDYRNIGKKATALDEASSCLPLCVENIATNVLTLLSFTFSVCIMVFEGDTNFICTVMESSDGLYAAAASLGLDLQLFCSNSSELTDEIIVSCIGNSIKLTSGLYPKMPESETLAESFLTKFPSVNPLTAHAMLSSKGMLLELLECRHEQRIIAVKKYHVPEESTNLFSILCQS***********************************QQKSIYNPDKIDILMNDFLQFEPLNQVTDGLLNPSKVFKLYDSWKDHEIFDDYQKPGSSVNELSGKKQELDFDMMMKASRVSKAYNSQIFECPRILEEINDPKFSWKDSLLGQNQGLGSAGMNNFDCHNISKTSCLQEDFIGEVVDLTSSPLSGKEFF*************QMENNSLMKSKIARRLSFGKNGLLHFPTAAELNSGSDIVD****************DAENNNDKLLLEHRKNLLDQVFVQRFAGSRGVPFQEEISHYNGTPLSKAIRSANPQPGSPWTVEFLNRIKEKSRLRQQSLPADTAAPCLGISGNLSKVTKRRSPSILEFFKYQG***************************PSTSFLPTWTPVDKRSRQTLSFALNESGNQTKLVWNDGN***********

*RTRFLNTDYFTTSSSSTPIETLNFLSLPIPHVSQSLLSVGKDDHLRFDSVLDVSLDIDQLPIHSALSKFFFDVIPQAIDVDFHDFEDLRFPISIVGGDEKESDIIDEEKE****RTSRLEALEVEPPKKDNETAMDDQNTHNFEVIQFETPEPAMFLENGSLYEKEEIWIVSEVPEIDNNLDMLTPGLAIQYLNEVRESVYSFDVVAFDYHVEQEASNLEDDGSFPDQMLCQSYMFPLLEVDEISRGTLEIPSTEDELLSILKKQELQHWTQKDNMLISSKEILGSLEYDILDVLLDHSSSKQCLESEMASQDMFHEMDFIGMVETSQLQENSKFHQLMEDSDCLLSMSPVIFEEFEISNVDLSKLFEVFFSTQAPSEPVACAWMFREDMNFKNFNELIIIQELALIDDTFKSLPTPVFSEKIRSVYAVVEEKLADLKPQPLSASDGIYLDWHLLDGDECSHKFFCYDQKILQEIDLHNIDFDLESSDDDKLVSTFIFSDNALSGPNMEGCEESLNTDFLGISGLYGHVMG******************************FFKSTSQFNDLDFFLNPQK*I***************************SDVFQQWDVTLYKVKLSDDILALIDIFKKSYLAIVHNETELSSFVTSDDFKLLSLPKQRLMDCINRKRFQKANSHGDGNCMALITLCSIKLMAWYTCFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKIDKETSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWWSLKCLVMSMGLSCSELQNFYTHVDQPDVTKVYGSASAKMTDLPISDCLMVSHESVSASFPFKKFSLILEYGGSHGSSRISALSPKVAGLPHLHFLKVELDDSSASRALCEGLDVPENMEVELLDLLPVEDGYHMGSGEAADTIEACCMPPSVPCSQLAIESEQIQPRMMSYPVTVIVVNTQNVDKEMIVSRRSTYQKILALEKEGVQVVERDSDLPVDIIISTATCLVWYDYRNIGKK******ASSCLPLCVENIATNVLTLLSFTFSVCIMVFEGDTNFICTVMESSDGLYAAAASLGLDLQLFCSNSSELTDEIIVSCIGNSIKLTSGLYPKMPESETLAESFLTKFPSVNPLTAHAMLSSKGMLLELLECRHEQRIIAVKKYHVPEESTNLFSILCQSGEH***********************H*NSDS**TQQKSIYNPDKIDILMNDFLQFEPLNQVTDGLLNPSKVFKLYDSWKDH**FD*Y*K*************************VSKAYNSQIFECPRILEEINDPKFSWKDSLLGQNQGLGSAGMNNFDCHNISKTSCLQEDFIGEVVDLTSSPLSGKEFFSVPKSSSL*ASVP**EN*SLMKSKIARRLSFGKNGLLHFPTAAELNSGSDIVDSGKVQRQSTQGTTDHPDAENNNDKLLLEHRKNLLDQVFVQRFAGSRGVPFQEEISHYNGTPLSKAIRSANPQPGSPWTVEFLNRIKEKSR***QS*PADTAAPCLG************SPSILEFFKYQG******************************SFLPTWTPVDKRSRQTLSFALNESGNQTKLVWNDG************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MRTRFLNTDYFTTSSSSTPIETLNFLSLPIPHVSQSLLSVGKDDHLRFDSVLDVSLDIDQLPIHSALSKFFFDVIPQAIDVDFHDFEDLRFPISIVGGDEKESDIxxxxxxxxxxxxxxxxxxxxxPPKKDNETAMDDQNTHNFEVIQFETPEPAMFLENGSLYEKEEIWIVSEVPEIDNNLDMLTPGLAIQYLNEVRESVYSFDVVAFDYHVEQEASNLEDDGSFPDQMLCQSYMFPLLEVDEISRGTLEIPSTEDELLSILKKQELQHWTQKDNMLISSKEILGSLEYDILDVLLDHSSSKQCLESEMASQDMFHEMDFIGMVETSQLQENSKFHQLMEDSDCLLSMSPVIFEEFEISNVDLSKLFEVFFSTQAPSEPVACAWMFREDMNFKNFNELIIIQELALIDDTFKSLPTPVFSEKIRSVYAVVEEKLADLKPQPLSASDGIYLDWHLLDGDECSHKFFCYDQKILQEIDLHNIDFDLESSDDDKLVSTFIFSDNALSGPNMEGCEESLNTDFLGISGLYGHVMGVSSGKLFENGSPKPGNAEQSSERNAERVSLFFKSTSQFNDLDFFLNPQKPITGENCEFAVKEFDALSPSSNSMGAGLSSDVFQQWDVTLYKVKLSDDILALIDIFKKSYLAIVHNETELSSFVTSDDFKLLSLPKQRLMDCINRKRFQKANSHGDGNCMALITLCSIKLMAWYTCFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKIDKETSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWWSLKCLVMSMGLSCSELQNFYTHVDQPDVTKVYGSASAKMTDLPISDCLMVSHESVSASFPFKKFSLILEYGGSHGSSRISALSPKVAGLPHLHFLKVELDDSSASRALCEGLDVPENMEVELLDLLPVEDGYHMGSGEAADTIEACCMPPSVPCSQLAIESEQIQPRMMSYPVTVIVVNTQNVDKEMIVSRRSTYQKILALEKEGVQVVERDSDLPVDIIISTATCLVWYDYRNIGKKATALDEASSCLPLCVENIATNVLTLLSFTFSVCIMVFEGDTNFICTVMESSDGLYAAAASLGLDLQLFCSNSSELTDEIIVSCIGNSIKLTSGLYPKMPESETLAESFLTKFPSVNPLTAHAMLSSKGMLLELLECRHEQRIIAVKKYHVPEESTNLFSILCQSGEHEDSKSIMTDCSSSVSSGLDSDKSHLNSDSGRTQQKSIYNPDKIDILMNDFLQFEPLNQVTDGLLNPSKVFKLYDSWKDHEIFDDYQKPGSSVNELSGKKQELDFDMMMKASRVSKAYNSQIFECPRILEEINDPKFSWKDSLLGQNQGLGSAGMNNFDCHNISKTSCLQEDFIGEVVDLTSSPLSGKEFFSVPKSSSLSASVPQMENNSLMKSKIARRLSFGKNGLLHFPTAAELNSGSDIVDSGKVQRQSTQGTTDHPDAENNNDKLLLEHRKNLLDQVFVQRFAGSRGVPFQEEISHYNGTPLSKAIRSANPQPGSPWTVEFLNRIKEKSRLRQQSLPADTAAPCLGISGNLSKVTKRRSPSILEFFKYQGGSTPGKLPEKKKQKRSVNSSTLSENKMPSTSFLPTWTPVDKRSRQTLSFALNESGNQTKLVWNDGNSQSMRKKLRNQ

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1639
449505269		1654	PREDICTED: uncharacterized LOC101214826	0.963	0.954	0.421	0.0
297796043		1581	hypothetical protein ARALYDRAFT_918272 [	0.923	0.957	0.406	0.0
240256438		1594	shortage in chiasmata 1 [Arabidopsis tha	0.923	0.949	0.400	0.0
297789321		1581	hypothetical protein ARALYDRAFT_497372 [	0.912	0.946	0.397	0.0
10177395		1569	unnamed protein product [Arabidopsis tha	0.909	0.950	0.396	0.0
206944395		1594	shortage in chiasmata [Arabidopsis thali	0.902	0.928	0.398	0.0
449461301		1573	PREDICTED: uncharacterized protein LOC10	0.892	0.930	0.421	0.0
224120016		1337	predicted protein [Populus trichocarpa]	0.446	0.546	0.569	0.0
302143889		1591	unnamed protein product [Vitis vinifera]	0.433	0.446	0.557	0.0
255539457		1318	conserved hypothetical protein [Ricinus	0.421	0.524	0.547	0.0

>gi\|449505269\|ref\|XP_004162421.1\| PREDICTED: uncharacterized LOC101214826 [Cucumis sativus]	Back alignment and taxonomy information

 Score = 1035 bits (2675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 712/1690 (42%), Positives = 984/1690 (58%), Gaps = 111/1690 (6%)

Query: 1    MRTRFLNTDYFTTSSSSTPIETLNFLSLPIPHVSQSLLSVGKDDHLRFDSVLDVSLDIDQ 60
            MRTRFL+ DYF +       ET +F SLP+PH+     S    D L F  +   SL I  
Sbjct: 1    MRTRFLHIDYFAS-------ETHSFHSLPVPHLISIPFST-LSDLLHFHFLPQFSLPIHN 52

Query: 61   LPIHS-ALSKFFFDVIPQAIDVDFHDFEDLRFPISIVGGDEKESDIIDEEKEEESKRTSR 119
            L IHS AL+KFF  V+P+ I  D H   D   P S + G      +     EEE+K T  
Sbjct: 53   LSIHSSALAKFFDHVLPRTIHDDVHHASD---PSSRLQGIFSSESVQTRFLEEEAKGTYE 109

Query: 120  LEALEVEPPKKDNETA--------MDDQNTH-NFEVIQFETPEPAMFLENGSLYEKEEIW 170
             E +E +     +ET+         D +N +  ++VIQFETP+   +LEN  L+EKEE  
Sbjct: 110  -ENMEGDWKNFGSETSEIEFKDTGADAKNRNLAYDVIQFETPQLDAYLENALLFEKEEAQ 168

Query: 171  IVSEVPEIDNNLDMLTPGLAIQYLNEVRESVYSFDVVAFDYHVEQEASNLEDDGSFPDQM 230
            +++ + E + +L+ L  GL ++Y +EV+ESVY+ + +  +Y ++Q +   EDD S   ++
Sbjct: 169  VLTVLSEAEFDLETLNLGL-LKYPSEVKESVYAVECIISEYLLDQRSCLFEDDFSQDRRL 227

Query: 231  LCQSYMFPLLEVDEISRGTLEIPSTEDELLSILKKQELQHWTQKDNMLISSKEILGSLEY 290
            L QS  FP LEVDEI   TL + S +DE+  IL   E     Q  ++L+S++E L S++ 
Sbjct: 228  LDQS-TFPFLEVDEIVLETLALLSLQDEIFFILDNTEPDR-IQDVSLLVSNEEYLCSMKC 285

Query: 291  DILDVLLDHSSSKQCLESEMASQDMFHEMDFIGMVETSQLQENSKFHQLMEDSDCLLSMS 350
            DI + L DH     C  SE+ S D+F   + + ++ET ++  +S    +   S     + 
Sbjct: 286  DIEEFLSDHILDP-CEVSEIVSSDIFGGSEPMSLIETLEIPGSSA---IQTKSTFDFPIG 341

Query: 351  PVIFEEFEISNVDLSKLFEVFFSTQAP--SEPVACAWMFREDMNFKNFNELIIIQELALI 408
            P  FEEF++ +V + + F VFF  +    SE   C  +  E  +FKNFNELI+  ELAL+
Sbjct: 342  PASFEEFQLLDVSMDQPFGVFFDLELSFLSEISDCISI--ESTDFKNFNELIVCHELALV 399

Query: 409  DDTFKSLPTPVFSEKI--RSVYAVVEEKLADLKPQPLSASDGIYLDWHLLDGDECSHKFF 466
            DDTFKSLP P+ S +   R + A +E+ LA+L  Q LSASD IYLDW+LL+ + CS   +
Sbjct: 400  DDTFKSLPVPILSSQGSERPLLAFIEDALANLNVQSLSASDDIYLDWYLLEENSCSSGIY 459

Query: 467  CYDQKILQEIDLHNIDFDLESSDDDKLVSTFIFSDNALSGPNMEGCEESLNTDFLGISGL 526
                 +L+EI+L  ++FD E  ++D     ++FSD  L     E   E   +   GIS L
Sbjct: 460  LSYHNMLEEINLKPMEFDQEPFENDSTFYIYVFSDEDLVRETTEDKGELKESFPNGISML 519

Query: 527  YGHVMGVSSGKLFENGSPKPGNAEQSSERNAERVSLFFKSTSQFNDLDFFLNPQKPITGE 586
                  V S KL  +   +   A   +  N  + S  +KS S+ +D DFFLN QKP+   
Sbjct: 520  PSQTFIVDSSKLLNDRCQRQDIA---AVGNTAKTSSSWKSKSESSDPDFFLNFQKPVGMG 576

Query: 587  NCE--FAVKEFDALSPSSNSMGAGLSSDVF-------QQWDVTLYKVKLSDDILALIDIF 637
              E  F+    + + P     G   +  +        +Q +V +++V LSD+IL LI+  
Sbjct: 577  KSESVFSTTNTNTMLPRVPCDGKLTNKPLISSTDGSSKQLNVEVHQVFLSDNILHLINNS 636

Query: 638  KKSYLAIVHNETELSS----FVTSDDFKLLSLPKQRLMDCINRKRFQKANSHGDGNCMAL 693
            +K+YLAI+ NET L      +V  D   +LSLPKQ+L+DCI +   + ++++ +   M L
Sbjct: 637  EKTYLAILQNETGLRKTYLPYVADDYSLMLSLPKQKLIDCIEKIYLRGSSTYWEEKIMTL 696

Query: 694  ITLCSIKLMAWYTCFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKIDKE-TSS 752
              L +IK + WY CFYGI+ A L + KLC+S  CL+SRLG L SL+  A   +D+E TSS
Sbjct: 697  AMLYAIKQIGWYLCFYGIYPAHLYLKKLCQSLECLQSRLGFLASLIEEAGNSVDREITSS 756

Query: 753  HPSLLVIQGILQSNSSQSNLKVLIVAEQSFWWSLKCLVMSMGLSCSELQNFYTHVDQPDV 812
            HP+L  IQ IL S +S S LKVLIVA Q FWWSLK L+ S+GLS  EL       DQ   
Sbjct: 757  HPALTTIQDILCSKTSTSTLKVLIVANQIFWWSLKKLLRSLGLSFEELNYGSPTNDQ--- 813

Query: 813  TKVYGSASAKMTDLPISDCLMVSHESVSASFPFKKFSLILEYGGSHGSSRISALSPKVAG 872
                 S +    D  +S CL+VS E VS SFPF KF +ILEYGG  GSS+IS     +  
Sbjct: 814  ----VSNATITVDGLVSTCLLVSQEYVSGSFPFNKFRIILEYGGPDGSSQISTYFSNLID 869

Query: 873  LPHLHFLKVELDDSSASRALCEGLDVPENMEV----------------ELLDLLPVEDGY 916
            +PHLHF+ +ELD+   S+A CEG+D+P++ E+                +LL+ LPVE+ +
Sbjct: 870  MPHLHFVMLELDNCGNSKAFCEGVDLPQHNELTIEEKSLVENQARLLKKLLNFLPVEEKH 929

Query: 917  HMGSGEAADTIEACCMPPSVPCSQLAIESEQIQPRMMSYPVTVIVVNTQNVDKEMIVSRR 976
             + S EA    + C +P  VP   +  + + I   +MS+P  + +VNTQ  +KEMIV RR
Sbjct: 930  TLASPEATIEADDCRVPLRVPAGSVLEKPQHID--LMSFPEAITIVNTQKFEKEMIVCRR 987

Query: 977  STYQKILALEKEGVQVVERDSDLPVDIIISTATCLVWYDYRNIGKKATALDEASSCLPLC 1036
            S+YQ+ILALEKEGVQVVERD  LPVD+II++  CL+WYD  NI KKA+  +EAS CL LC
Sbjct: 988  SSYQRILALEKEGVQVVERDMSLPVDLIITSGICLMWYDCTNIIKKASTSNEASLCLNLC 1047

Query: 1037 VENIATNVLTLLSFTFSVCIMVFEGDTNFICTVMESSDGLYAAAASLGLDLQLFCSNSSE 1096
            +ENIAT++LT LS  F  C++VFEG+ NF+  VMESSDGLYAAAASL +D QLFCS SSE
Sbjct: 1048 IENIATDLLTSLSLAFQGCVLVFEGEINFLSIVMESSDGLYAAAASLEIDFQLFCSYSSE 1107

Query: 1097 LTDEIIVSCIGNSIKLTS-GLYPKMPESETLAESFLTKFPSVNPLTAHAMLSSKGMLLEL 1155
            LTDEII+ CI N  K T+  LYPKM ESETLAESFLT FPS+NPLTAH +LSS+ +L + 
Sbjct: 1108 LTDEIILGCIQNVSKFTTRRLYPKMSESETLAESFLTSFPSINPLTAHGILSSESILADF 1167

Query: 1156 LECRHEQRIIAVKKYHVPEESTNLFSILCQSGEHEDSKSIMTDCSSSVSSGLDSDKSHLN 1215
            LE  HE+R+ A++KY +P+ES  LFS LC+ GE EDSKS+MTDCSSSVSSG DS+  H N
Sbjct: 1168 LEWPHERRLQAIRKYCIPDESVYLFSALCKYGEREDSKSVMTDCSSSVSSGPDSEICHFN 1227

Query: 1216 SDSGRTQQKSIYNPDKIDILMNDFL---QFEPLNQVT-DGLLNPSKVFKLYDSWKDHEIF 1271
             +S R ++        I+  M +FL   + +P    T + L   SK F     ++D EI 
Sbjct: 1228 GNSDRKRRNFTGGTQYINENM-EFLSSYRLKPFTADTPETLAAASKSF-CSQMFEDPEIL 1285

Query: 1272 DDYQKPGSSVNELSGKKQELD-FD--MMMKASRVSKAYNSQIFECPRILEEINDPKFSWK 1328
             D +   SSVN L  +   L+ FD  + M  +RV K  +S I   P I +EI       +
Sbjct: 1286 GDLKGLSSSVNNLFNQNHNLEPFDATISMDPTRVCKPRDSWISTAPEISDEIRG-----R 1340

Query: 1329 DSLLGQNQGLGSAGMNNFDCHNISKTSCLQEDFIGEVVDLTSSPLSGKEFFSVPKSSSLS 1388
             S   QNQGL          HN++ +    E+ I EVV+L  + +    F   P  + L+
Sbjct: 1341 CSSFVQNQGLDRIKKVQ-SYHNMNTSENQPEELIDEVVNLADNAILKDHF---PTMAPLN 1396

Query: 1389 ASVPQMENN---SLMKSKIARRLSFGKNGLLHFPTAAELNSGSDIVDSGKVQRQSTQGTT 1445
              +P M +N   S  K KI RRLS+G++           NS SD   S  +  +S  G  
Sbjct: 1397 F-LPSMHDNEKDSSRKFKIQRRLSYGQSDDPFCAGDVGNNSSSDFWSSINLHGRSLPGLD 1455

Query: 1446 DH-PDAENNNDKLLLEHRKNLLDQVFVQRFAGSRGVPF---QEEISHYNGTPLSKAIRSA 1501
             H PD       + L+++ +  D   VQ       + F   Q+  SH + TPLS A+RS 
Sbjct: 1456 SHFPDPSFEPIIMPLQYKDHHSDDRLVQTPVKDSKLLFSLAQKGTSHSDVTPLSNALRSK 1515

Query: 1502 NPQPGSPWTVEFLNRIKEKSRLRQQSLPADTAAPCLGISGNLSKVTK--RRSPSILEFFK 1559
            N Q  SPWT+EFLNRI+EKS+ R+  +P  +++P      NLS V K  +RS SILEFFK
Sbjct: 1516 NLQESSPWTMEFLNRIREKSKNRRNFVPRCSSSP---FPENLSNVKKTVKRSSSILEFFK 1572

Query: 1560 YQGGSTPGKLPEKKKQKRSVNSSTLSENKMPS-TSFLPTWTPVDKRSRQTLSFALNESGN 1618
            YQGGST  K P++K+QK+S+ SS  S+N + + +S L +WTP+DKRSRQTLSFA + +G+
Sbjct: 1573 YQGGSTLKK-PDQKRQKQSLQSSNSSKNVLSAPSSELSSWTPIDKRSRQTLSFATDGNGS 1631

Query: 1619 QTKLVWNDGN 1628
            QTKLVW + N
Sbjct: 1632 QTKLVWCNDN 1641

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297796043\|ref\|XP_002865906.1\| hypothetical protein ARALYDRAFT_918272 [Arabidopsis lyrata subsp. lyrata] gi\|297311741\|gb\|EFH42165.1\| hypothetical protein ARALYDRAFT_918272 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|240256438\|ref\|NP_200042.4\| shortage in chiasmata 1 [Arabidopsis thaliana] gi\|332008813\|gb\|AED96196.1\| shortage in chiasmata 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297789321\|ref\|XP_002862640.1\| hypothetical protein ARALYDRAFT_497372 [Arabidopsis lyrata subsp. lyrata] gi\|297308283\|gb\|EFH38898.1\| hypothetical protein ARALYDRAFT_497372 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|10177395\|dbj\|BAB10526.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|206944395\|gb\|ACI22656.1\| shortage in chiasmata [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449461301\|ref\|XP_004148380.1\| PREDICTED: uncharacterized protein LOC101214826 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224120016\|ref\|XP_002318221.1\| predicted protein [Populus trichocarpa] gi\|222858894\|gb\|EEE96441.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|302143889\|emb\|CBI22750.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255539457\|ref\|XP_002510793.1\| conserved hypothetical protein [Ricinus communis] gi\|223549908\|gb\|EEF51395.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1639
TAIR\|locus:2156642		1594	SHOC1 "AT5G52290" [Arabidopsis	0.703	0.723	0.406	2.9e-229

TAIR\|locus:2156642 SHOC1 "AT5G52290" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2029 (719.3 bits), Expect = 2.9e-229, Sum P(2) = 2.9e-229
 Identities = 502/1236 (40%), Positives = 714/1236 (57%)

Query:   129 KKDNETAMDDQNTHNFEVIQFETPEPAMFLENGSLYEKEE-IWIVSEVPEIDNN-LDMLT 186
             +KD+  A+ D+ T   ++I+ ETPE    +EN  L   E+ +   SEV EI N+ +    
Sbjct:   100 EKDDGDAIADKATP--KIIELETPELDFEMENKLLCTSEDHLQCFSEVLEIKNDPVKYEG 157

Query:   187 PGLAIQYLNEVRESVYSFDVVAFDYHVEQEASNLEDDGSFPDQMLCQSYMFPLLEVDEIS 246
               + +Q   +++E +YS D +  DY  E   S  E++     Q   +   FPLLEVDE++
Sbjct:   158 SDIILQNSKDIQEQIYSVDYIPSDYFTENNTSVAENECFRKIQPWFKDARFPLLEVDEVN 217

Query:   247 RGTLEIPSTEDELLSILKKQELQHWTQKDNMLISSKEILGSLEYDILDVLLDHSSSKQCL 306
                L   S  D++ ++L+  E Q      +++I+SKE++GS +YD+LDVL       +  
Sbjct:   218 LSELSSLSVLDKVFTVLETIEPQDTNAGSSLIINSKELIGSKDYDLLDVLSTDCYLNKSG 277

Query:   307 ESEMASQDMFHEMDFIGMVETSQLQENSKFHQLMEDSDCLLSMSPVIFEEFEISNVDLSK 366
             +S++  +D F EMD + ++E S  +E   F   +          PV +EEF+I +VD+S 
Sbjct:   278 QSDVVPEDEFSEMDIVTILEISNAEE---FQGKVA--------VPVTYEEFQILDVDISD 326

Query:   367 LFEVFFSTQAPSEPVACAWMFREDMNFKNFNELIIIQELALIDDTFKSLPTPVFS--EKI 424
             +F++F   Q   EP  C  MF ++MNFK+F+EL++  ELA  DD FKSLPTP+    E  
Sbjct:   327 VFDIFLCLQKAIEPEICYGMFSKEMNFKDFDELVVSSELAFTDDAFKSLPTPILHDYEMT 386

Query:   425 RSVYAVVEEKLADLKPQPLSASDGIYLDWHLLDGDECSHKFFCYDQKILQEIDLHNIDFD 484
             RS+  + E+ L+ +KPQ LSAS+ IYL W+LL+  E +H    Y     +EI   NID++
Sbjct:   387 RSLELIYEDVLSKIKPQSLSASNDIYLPWNLLE--ERNHNHCDYP---FEEIVTFNIDYN 441

Query:   485 LESSDDDKLVSTFIFSDNALSGPNMEGCEESLNTDFLGISGLYGHVMGVSSGKLFENGSP 544
              E+S+ DK V  FIFS++A   P +E C E     F GIS L  H    +S  L EN   
Sbjct:   442 WEASEGDKWVYDFIFSEDAFCEPLVEKCTEP----FYGISNLDEHAPVNTSHGLLENPFQ 497

Query:   545 KPGNAEQSSERNAERVSLFFKSTSQFNDLDFFLNPQKPITGENCEF---AVKEFDALSPS 601
             K G  + + + NA++ +L FKS S F+DL FF++P+K +  +N E    A K  +    S
Sbjct:   498 KTGARDCAVDDNAKKATLLFKSMSAFDDLTFFMDPKKAVIEDNLESRVEAAKTTNHKCMS 557

Query:   602 SNSMGAGLSSDVF---QQWDVTLYKVKLSDDILALIDIFKKSYLAIVHNETELSSFVTSD 658
              +S  +  S  +    +  ++ L+ V+ S++I AL+  F KSYL +V +E+E  S    D
Sbjct:   558 IDSKASCRSGGMHPNPKTEEMILHSVRPSENIQALVGEFVKSYLTLVKDESENLS---ED 614

Query:   659 DFKLLSLPKQRLMDCINRKRFQKANSHGDGNCMALITLCSIKLMAWYTCFYGIHTARLCV 718
               KLLS+ K +L+DCI +    K     D        L +IK M WY CF+GIH A + +
Sbjct:   615 KLKLLSISKGKLIDCIRKANVHKTQL-ADDKTFTFALLLAIKQMTWYMCFFGIHVAYIYL 673

Query:   719 DKLCKSQGCLKSRLGSLQSLVVAADGKIDKE--TSSHPSLLVIQGILQSNSSQSNLKVLI 776
             +K+C+S   +K  L +L S  V  + K D+   T SHPSL VIQGILQS  ++ N K L+
Sbjct:   674 NKVCRSSNPMKIGLHTLYS-AVETEHKSDETDITRSHPSLAVIQGILQSEFARGNSKALL 732

Query:   777 VAEQSFWWSLKCLVMSMGLSCSELQNFYTHVDQPDVTKVYGSASAKMTDLPISDCLMVSH 836
             +AE+ FW SLK L+MSMGLS ++L +     ++P+V +     + ++  LPISDCL++S+
Sbjct:   733 LAEKVFWSSLKRLLMSMGLSYNDLNSPSPSGNRPNVHE-----AIELGFLPISDCLIISY 787

Query:   837 ESVSASFPFKKFSLILEYGGSHGSSRISALSPKVAGLPHLHFLKVELDDSSASRALCEGL 896
             E +S SFP + FS+I+EYGG + S R S  S K+   P  HF+KVELD  SA   LC G+
Sbjct:   788 EQISPSFPVENFSVIVEYGGPNASPRYSFPS-KLDSFPSFHFIKVELDMPSACGQLCAGV 846

Query:   897 DVPENMXXXXXXXXXXXXGY--------------HMGSGEAADTIEACCMPPSVPCSQLA 942
              VP ++            G+              + GS E  +  E   MP      +  
Sbjct:   847 TVPYSLKMIKGDEVETKTGWLEEVLNFVPLEKVCYAGSSETTNESEFISMPQESERKRGI 906

Query:   943 IESEQIQPRMMSYPVTVIVVNTQNVDKEMIVSRRSTYQKILALEKEGVQVVERDSDLPVD 1002
             IE      R      +VIVVNT+ VDKEMI+SRRSTYQK+LA+EKEGVQVVERDSDLPVD
Sbjct:   907 IEQGLSDQR------SVIVVNTKTVDKEMIISRRSTYQKVLAMEKEGVQVVERDSDLPVD 960

Query:  1003 IIISTATCLVWYDYRNIGKKATALDEASSCLPLCVENIATNVLTLLSFTFSVCIMVFEGD 1062
             +++S A CL+WYD   + KK+ A    SS     + +IATNVLT LSF+FS CIMVFEG+
Sbjct:   961 LMLSPAVCLLWYDSETVSKKSAATIGTSSSSLSWIGDIATNVLTSLSFSFSTCIMVFEGE 1020

Query:  1063 TNFICTVMESSDGLYAAAASLGLDLQLFCSNSSELTDEIIVSCIGNSIKLTSGLYPKMPE 1122
               F+  VM+SSD LYAAA SLG+ LQ+FCS+S+ LTDEII+ CI +S+KL S L+ KMPE
Sbjct:  1021 PAFLAAVMDSSDELYAAAGSLGISLQMFCSSSANLTDEIILKCIKSSVKL-SKLHVKMPE 1079

Query:  1123 SETLAESFLTKFPSVNPLTAHAMLSSKGMLLELLECRHEQRIIAVKKYHVPEESTNLFSI 1182
             SE+LAESFLTKFPSVNPLTA  +LSS G LLE ++  H+ ++   +KYHVPEES +LFS 
Sbjct:  1080 SESLAESFLTKFPSVNPLTAQVILSSSGSLLEFMKLPHKSKVERTQKYHVPEESVDLFSS 1139

Query:  1183 LCQSGEHEDSKSIMTXXXXXXXXXXXXXXXHLNSDSGRTQQKSIYNPDKIDILMNDFLQF 1242
             +C+ G  EDS+S+MT               H++  SG  +++ I   D+ID  M+D + F
Sbjct:  1140 VCRYGAREDSRSVMTDSSSSVSSGPDSDTHHVSVHSGSKKKQYIAEKDEID--MDDLVHF 1197

Query:  1243 EPLNQVTDGLLNPSKVFKLYDSW--KDHEIFDDYQKPGSSVNELSGKKQELDFDMMMKAS 1300
              P  +  D  L  S  F+L DSW  KDHEIF  +  P   V E S        D   K S
Sbjct:  1198 SPSIEFADTQLKSSGDFQLDDSWSSKDHEIF--HFDP---VTEFS--------DAPFKPS 1244

Query:  1301 RVSKAYNSQIFECPRILEEINDPKFSWKDSLLGQNQ 1336
              +S   +S   + P   ++ + P  S KD+   ++Q
Sbjct:  1245 GISHPNDSWPSKDPERFDKKSGPGSSSKDTFWEKDQ 1280

GO:0003674 "molecular_function" evidence=ND

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_801672.1	annotation not avaliable (1581 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1639
PRK13766		773	Hef nuclease; Provisional	98.55
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	98.21
COG1948		254	MUS81 ERCC4-type nuclease [DNA replication, recomb	93.79
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	93.52
PF02732		143	ERCC4: ERCC4 domain; InterPro: IPR006166 This entr	86.18

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

Probab=98.55  E-value=7.1e-05  Score=91.88  Aligned_cols=512  Identities=13%  Similarity=0.162  Sum_probs=260.1

Q ss_pred             ceeEEEeecccchhHHHHHHHHHHHHhhhhccccccccccCcccccccCcchhhhhhhhhhccccccc---cC-CCCCch
Q 043303          616 QWDVTLYKVKLSDDILALIDIFKKSYLAIVHNETELSSFVTSDDFKLLSLPKQRLMDCINRKRFQKAN---SH-GDGNCM  691 (1639)
Q Consensus       616 ~~~i~lh~V~lSd~I~~Li~~~~ksYls~l~~~te~~h~~d~d~~kll~i~K~kL~d~I~~~~s~~~~---~~-~~~~~m  691 (1639)
                      ...++...|.+++.+..+...+..-+..-+++-..+...... .   ..+.+..|...-+.  .+...   .| .+..+.
T Consensus       207 ~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~-~---~~~~~~~l~~~~~~--~~~~l~~~~~~~~~~~~  280 (773)
T PRK13766        207 KVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSI-S---PDVSKKELLGLQKK--LQQEIANDDSEGYEAIS  280 (773)
T ss_pred             cceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccC-C---CCcCHHHHHHHHHH--HHHHhhcCchHHHHHHH
Confidence            345666678899998887776666555444432222211000 0   01223222222110  01110   01 111111


Q ss_pred             hHHHHHHHHhhhhhheeeccchhhhHHhhhhhhccccccchhhhHHHHHhhcc-----ccccccCCCCchHHHHHHHhhc
Q 043303          692 ALITLCSIKLMAWYTCFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADG-----KIDKETSSHPSLLVIQGILQSN  766 (1639)
Q Consensus       692 ~li~L~aiKQaA~ylcfyGIH~Ahlyl~~l~~s~e~~~~~L~~i~slI~~a~~-----kve~~~~sHPsL~~Iq~iL~s~  766 (1639)
                      -++-+.-+.++..++.-+|.-+..-|+..+.... ..++.....+.++.++..     ..+.-.+.|||+..+..+|+..
T Consensus       281 ~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~  359 (773)
T PRK13766        281 ILAEAMKLRHAVELLETQGVEALRRYLERLREEA-RSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQ  359 (773)
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc-cccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHH
Confidence            2223344567777888888877777776655322 222334444444443332     2222367899999999999887


Q ss_pred             cc-cCCceEEEEe-chhHHHHHHHHHHhcCCccccccCccccc--------CCccccccccccccccccCCCcceeeecc
Q 043303          767 SS-QSNLKVLIVA-EQSFWWSLKCLVMSMGLSCSELQNFYTHV--------DQPDVTKVYGSASAKMTDLPISDCLMVSH  836 (1639)
Q Consensus       767 ~~-~~~~K~LIVa-d~~Fwlslk~~L~sMg~s~~el~~~~~s~--------~~~D~~e~~~f~~~~~~~L~~SDCLL~s~  836 (1639)
                      .. .++.|+||.+ .+-.=--|.+.|..+|..+..+.+...+.        .+....+.  |..      ...++|+++.
T Consensus       360 ~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~--F~~------g~~~vLvaT~  431 (773)
T PRK13766        360 LGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDK--FRA------GEFNVLVSTS  431 (773)
T ss_pred             HhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHH--HHc------CCCCEEEECC
Confidence            64 3578888888 55555566788899999988777643211        11123332  332      2467777775


Q ss_pred             cccccCCCcccceeEEEecCCCCCccccccCccccCCCc--ceEEEEEe--CchhhhHhhhcCCCCChhh--HHHhhcCC
Q 043303          837 ESVSASFPFKKFSLILEYGGSHGSSRISALSPKVAGLPH--LHFLKVEL--DDSSASRALCEGLDVPENM--EVELLDLL  910 (1639)
Q Consensus       837 ~hI~~sFPf~~F~iIveYggs~~ss~i~~ls~kLa~~p~--lHfL~Vel--D~~~a~~alceg~~~pq~~--le~~Ln~~  910 (1639)
                       -+.++.=+..=..+|-|.++....++-.-.-|.+-...  +++|..+=  |......++-.--.+-..+  ....+. .
T Consensus       432 -~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~l~~~~t~ee~~y~~~~~ke~~~~~~l~~~k~~l~-~  509 (773)
T PRK13766        432 -VAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVVLIAKGTRDEAYYWSSRRKEKKMKEELKNLKGILN-K  509 (773)
T ss_pred             -hhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEEEEEeCCChHHHHHHHhhHHHHHHHHHHHHHHHhhh-h
Confidence             33356666677888889876544332211222211112  33332211  1110000000000000000  001111 1


Q ss_pred             cCcCCcc--cCCCccccCcccc---cCCCCC--ccc---cccccccccCCccccCCcEEEEEeccccccceeeehhhHHH
Q 043303          911 PVEDGYH--MGSGEAADTIEAC---CMPPSV--PCS---QLAIESEQIQPRMMSYPVTVIVVNTQNVDKEMIVSRRSTYQ  980 (1639)
Q Consensus       911 P~e~~~~--~~ss~~adE~~~~---~mP~~~--~~~---~~~~~~~~~~g~mls~p~~ViVVNt~~~~k~mI~sRRssYq  980 (1639)
                      |......  .......+++..+   .++...  .+.   .++-..    |.-......+|||-++++        |+...
T Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~vD~RE~--------~~~~~  577 (773)
T PRK13766        510 KLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKEEKDKE----TEEDEPEGPKIIVDSREL--------RSNVA  577 (773)
T ss_pred             ccccccccccccccccccccchhhhcccccccccccccccccccc----ccCCCCCCcEEEEeCCCc--------cchhh
Confidence            1100000  0000001111100   000000  000   001100    111123356788888553        22221


Q ss_pred             HHHHHhhcCceEEeecCCCCcceeccCceeEEEeecccccccccccccccccchhhHH----HHHHHHHHhhhcccceeE
Q 043303          981 KILALEKEGVQVVERDSDLPVDIIISTATCLVWYDYRNIGKKATALDEASSCLPLCVE----NIATNVLTLLSFTFSVCI 1056 (1639)
Q Consensus       981 ~ILaLEkeG~qVVERd~~LPVDliLS~s~CLvwy~~~~l~~~~~~~~g~sS~lp~~IE----~ia~nvL~aLSfsFs~Ci 1056 (1639)
                        -.|++.|++|+-|.+.+ =|.+||+.+|.        ..|+         ++.++.    ...-..+..|+-+|..-+
T Consensus       578 --~~l~~~g~~~~~~~L~~-gDy~~~~~~~v--------ERK~---------~~Dl~~s~~~~r~~~q~~~l~~~~~~~~  637 (773)
T PRK13766        578 --RHLKRLGAEVELKTLEV-GDYVVSDRVAV--------ERKT---------AEDFVDSIIDRRLFEQVKDLKRAYERPV  637 (773)
T ss_pred             --HHHHhCCCEEEEEecCC-CCEEccCCeEE--------EeCc---------HHHHHHHhhcCcHHHHHHHHHhcCCCcE
Confidence              25689999999999999 89999887542        2232         233333    445567889998999999


Q ss_pred             EEEeCCchhHHHH--HhhhHHHHHHHhhcCccEEEEEeCCcchhHHHHHHHHhhhhhhcCCC--CCCC-CCCcchhh---
Q 043303         1057 MVFEGDTNFICTV--MESSDGLYAAAASLGLDLQLFCSNSSELTDEIIVSCIGNSIKLTSGL--YPKM-PESETLAE--- 1128 (1639)
Q Consensus      1057 mIFEGe~~Fls~v--L~~~d~LYAAaaslGidlqlfiS~s~e~TdeIIls~I~~~~~~sk~~--~s~m-pESpS~eE--- 1128 (1639)
                      ++.||+......+  -.....|.+.++.+  .+.++.+.++++|+.+| ..++..-.....+  .... ..+.+..|   
T Consensus       638 lliE~~~~~~~~~~~~~i~~~l~~l~~~~--~~~ii~~~~~~eta~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (773)
T PRK13766        638 LIIEGDLYTIRNIHPNAIRGALASIAVDF--GIPILFTRDEEETADLL-KVIAKREQEEEKREVSVHGEKKAMTLKEQQE  714 (773)
T ss_pred             EEEEcCchhhcccCHHHHHHHHHHHHHHc--CceEEEeCCHHHHHHHH-HHHHhhccccCCCCcccccCCCCCCHHHHHH
Confidence            9999983211110  01112333344444  45678889999999997 5665543211111  1111 12334444   


Q ss_pred             hhcccCCCCCHHHHHHHHhCCccHHHHHhhchHHHHHHhhccCCChhhHHHHHH
Q 043303         1129 SFLTKFPSVNPLTAHAMLSSKGMLLELLECRHEQRIIAVKKYHVPEESTNLFSI 1182 (1639)
Q Consensus      1129 sfLt~FPsINPLtA~~mLssg~sL~efl~wa~~~qlq~l~~y~VpeeslklF~~ 1182 (1639)
                      ..|...|.|+|-+|..||..=+++..++. +...+++++.  .+.++..+.+..
T Consensus       715 ~~L~~ipgig~~~a~~Ll~~fgs~~~i~~-as~~~L~~i~--Gig~~~a~~i~~  765 (773)
T PRK13766        715 YIVESLPDVGPVLARNLLEHFGSVEAVMT-ASEEELMEVE--GIGEKTAKRIRE  765 (773)
T ss_pred             HHHhcCCCCCHHHHHHHHHHcCCHHHHHh-CCHHHHHhCC--CCCHHHHHHHHH
Confidence            25799999999999999999999999988 6667777763  355555555443

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>PF02732 ERCC4: ERCC4 domain; InterPro: IPR006166 This entry represents a structural motif found in several DNA repair nucleases, such as Rad1/Mus81/XPF endonucleases (3	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1639
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-22
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score =  104 bits (259), Expect = 2e-22
 Identities = 108/670 (16%), Positives = 207/670 (30%), Gaps = 213/670 (31%)

Query: 73  DVIP---QAI--DVDFHDFEDLRFPISIVGGDEKESDIIDEEKEEESKRTSRLEALEVEP 127
           D++     A   + D  D +D   P SI+   ++E D I   K+  S  T RL    +  
Sbjct: 20  DILSVFEDAFVDNFDCKDVQD--MPKSIL--SKEEIDHIIMSKDAVS-GTLRLFWTLLSK 74

Query: 128 PKKDNETAMDD--QNTHNF--EVIQFETPEPAM----FLE-------NGSLYEKEEIWIV 172
            ++  +  +++  +  + F    I+ E  +P+M    ++E       +  ++ K  +  +
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 173 SEVPEIDNNLDMLTPG---------------LAIQYL-NEVRESVYSFDV--VAFDYHVE 214
               ++   L  L P                +A+    +   +    F +  +       
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL----- 189

Query: 215 QEASNLEDDGSFPDQM--LCQSYMFPLLE-VDEISRGTLEIPSTEDELLSILKKQELQH- 270
               N     +  + +  L            D  S   L I S + EL  +LK +  ++ 
Sbjct: 190 ---KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 271 -------WTQK--DNMLISSKEILGSLEYDILDVLLDHSSSKQCLE------SEMASQDM 315
                     K  +   +S K +L +    + D L   +++   L+      +    + +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 316 FHEMDFIGMVETSQL-QENSKFHQLMEDSDCLLSM-------SPVIFEEFEISNVD-LSK 366
              + ++       L +E    +         LS+           ++ ++  N D L+ 
Sbjct: 307 L--LKYLDC-RPQDLPREVLTTNPR------RLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 367 LFEVFFSTQAPSEPVACAWMFREDMNFKNFNELIIIQELALIDDTFKSLPTPVFS----E 422
           + E   +   P+E       +R     K F+ L +    A I       PT + S    +
Sbjct: 358 IIESSLNVLEPAE-------YR-----KMFDRLSVFPPSAHI-------PTILLSLIWFD 398

Query: 423 KIRSVYAVVEEKLADLKPQPLSASDGIYLDWHLLDGDECSHKFFCYD------QKILQEI 476
            I+S   VV  KL                   L++                   K+  E 
Sbjct: 399 VIKSDVMVVVNKLHKYS---------------LVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 477 DLHNIDFDLESSDDDKLVSTF----IFSDNALSGPNMEG--CEESLNTDFLGISGLYGHV 530
            LH             +V  +     F  + L  P ++            +G    + H+
Sbjct: 444 ALHR-----------SIVDHYNIPKTFDSDDLIPPYLDQYFYS------HIG----H-HL 481

Query: 531 MGVSSGKLFENGSPKPGNAEQSSERNAERVSLFFKSTSQFNDLDF-FLNPQKPITGENCE 589
                            N E       ER++LF      F  LDF FL  QK        
Sbjct: 482 K----------------NIEH-----PERMTLF---RMVF--LDFRFLE-QKIR------ 508

Query: 590 FAVKEFDALSPSSNSMGAGLSSDVFQQWDVTLYKVKLSDD-------ILALID-IFKKSY 641
                      S+    +G   +  Q   +  YK  + D+       + A++D + K   
Sbjct: 509 ---------HDSTAWNASGSILNTLQ--QLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 642 LAIVHNETEL 651
             I    T+L
Sbjct: 558 NLICSKYTDL 567

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1639
2bgw_A		219	XPF endonuclease; hydrolase, structure specific en	97.49
2ziu_A		311	MUS81 protein; helix-hairpin-helix, alternative sp	94.06
1j23_A		143	HEF nuclease, ATP-dependent RNA helicase, putative	88.59

>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A	Back alignment and structure

Probab=97.49  E-value=0.0062  Score=63.54  Aligned_cols=185  Identities=17%  Similarity=0.189  Sum_probs=119.5

Q ss_pred             cEEEEEeccccccceeeehhhHHHHHH-HHhhcCceEEeecCCCCcceeccCceeEEEeecccccccccccccccccchh
Q 043303          957 VTVIVVNTQNVDKEMIVSRRSTYQKIL-ALEKEGVQVVERDSDLPVDIIISTATCLVWYDYRNIGKKATALDEASSCLPL 1035 (1639)
Q Consensus       957 ~~ViVVNt~~~~k~mI~sRRssYq~IL-aLEkeG~qVVERd~~LPVDliLS~s~CLvwy~~~~l~~~~~~~~g~sS~lp~ 1035 (1639)
                      ..+|||+++++.        +.   ++ .|.+.|+.|+-|.+.+ -|.++++.+|. -...                +..
T Consensus         8 ~~~iivD~RE~~--------s~---~~~~l~~~gv~~~~~~L~v-gDy~~~~~~~V-ERKs----------------~~D   58 (219)
T 2bgw_A            8 RPRVYVDVREER--------SP---VPSILESLGVQVIPKQLPM-GDYLVSDSIIV-ERKT----------------SSD   58 (219)
T ss_dssp             SCEEEEETTTTT--------SS---HHHHHHHTTCEEEEECCSS-SSEEEETTEEE-EEEE----------------HHH
T ss_pred             CeEEEEECCCcc--------cH---hHHHHHhCCCEEEEEEcCc-CCEEeeCCeEE-EeCC----------------HHH
Confidence            478999997743        22   33 5667799999999888 89999875443 2221                123


Q ss_pred             hHH----HHHHHHHHhhhcccceeEEEEeCCchh------HHHHHhhhHHHHHHHhhcCccEEEEEeCCcchhHHHHHHH
Q 043303         1036 CVE----NIATNVLTLLSFTFSVCIMVFEGDTNF------ICTVMESSDGLYAAAASLGLDLQLFCSNSSELTDEIIVSC 1105 (1639)
Q Consensus      1036 ~IE----~ia~nvL~aLSfsFs~CimIFEGe~~F------ls~vL~~~d~LYAAaaslGidlqlfiS~s~e~TdeIIls~ 1105 (1639)
                      ++.    ...-..+..|.=+|...+++.||+..-      -.+++..   |...++..  ++.++.+.++++|+.++ ..
T Consensus        59 l~~Si~~~Rl~~Q~~~l~~~~~~~~lliE~d~~~~~~~~~~~~i~~~---l~~~~~~~--~~~vi~t~s~~eta~~l-~~  132 (219)
T 2bgw_A           59 FAKSLFDGRLFEQASRLAEHYETVFIIVEGPPVPRRYRGRERSLYAA---MAALQLDY--GIRLMNTMDPKGTALVI-ES  132 (219)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHCSEEEEEEESCSSCGGGTTTHHHHHHH---HHHHHHHS--CCEEEEESSHHHHHHHH-HH
T ss_pred             HHHHhhcCcHHHHHHHHHHhcCCcEEEEEecCccccccCCHHHHHHH---HHHHHHHC--CceEEEcCCHHHHHHHH-HH
Confidence            332    344566666766699999999998643      2233322   22223334  66888999999999997 66


Q ss_pred             HhhhhhhcCCCC--C-CCCCCcchh---hhhcccCCCCCHHHHHHHHhCCccHHHHHhhchHHHHHHhhccCCChhhHHH
Q 043303         1106 IGNSIKLTSGLY--P-KMPESETLA---ESFLTKFPSVNPLTAHAMLSSKGMLLELLECRHEQRIIAVKKYHVPEESTNL 1179 (1639)
Q Consensus      1106 I~~~~~~sk~~~--s-~mpESpS~e---EsfLt~FPsINPLtA~~mLssg~sL~efl~wa~~~qlq~l~~y~Vpeeslkl 1179 (1639)
                      ++....-..++.  . .-....+..   ...|+..|.|+|-+|..|+..=+++..++. +...+|.++.  .|.++..+-
T Consensus       133 l~~~~~~~~~~ai~~~~~~~~~~~~~~~~~~L~~i~gVg~~~a~~Ll~~fgs~~~l~~-a~~e~L~~v~--GiG~~~a~~  209 (219)
T 2bgw_A          133 LARLSTREGGQRIVIHKKPRLSDVREWQLYILQSFPGIGRRTAERILERFGSLERFFT-ASKAEISKVE--GIGEKRAEE  209 (219)
T ss_dssp             HHHHHSCBCCTTCCCCCCCCCCHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHTT-CCHHHHHHST--TCCHHHHHH
T ss_pred             HHHhcccccccccccccccccccHHHHHHHHHhcCCCCCHHHHHHHHHHcCCHHHHHh-CCHHHHhhCC--CCCHHHHHH
Confidence            666542111111  0 111223433   335789999999999999999889988877 7777777664  356655443

PyMOL of 2bgw

>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A	Back alignment and structure

>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative; structure-specific endonuclease, hydrolase; 1.78A {Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A 1j25_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1639
d1j23a_		131	Putative ATP-dependent RNA helicase Hef, nuclease	89.9
d2bgwa2		133	XPF endonuclease {Aeropyrum pernix [TaxId: 56636]}	86.77

>d1j23a_ c.52.1.20 (A:) Putative ATP-dependent RNA helicase Hef, nuclease domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: XPF/Rad1/Mus81 nuclease
domain: Putative ATP-dependent RNA helicase Hef, nuclease domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.90  E-value=0.22  Score=46.86  Aligned_cols=108  Identities=23%  Similarity=0.278  Sum_probs=69.0

Q ss_pred             HHhhcCceEEeecCCCCcceeccCceeEEEeecccccccccccccccccchhhHHHHHHHHHHhhhcccceeEEEEeCCc
Q 043303          984 ALEKEGVQVVERDSDLPVDIIISTATCLVWYDYRNIGKKATALDEASSCLPLCVENIATNVLTLLSFTFSVCIMVFEGDT 1063 (1639)
Q Consensus       984 aLEkeG~qVVERd~~LPVDliLS~s~CLvwy~~~~l~~~~~~~~g~sS~lp~~IE~ia~nvL~aLSfsFs~CimIFEGe~ 1063 (1639)
                      .|.+.|++|+-|.+.+ =|.++++-+|        +..|..  +...+   +........++-.|.-+|.+++++.||+.
T Consensus        17 ~l~~~gi~~~~~~L~~-GDy~~~~~~~--------VERKt~--~Dl~~---Si~dgR~~~Q~~rl~~~~~~~~~lIEg~~   82 (131)
T d1j23a_          17 RLKLLGVKLEVKTLDV-GDYIISEDVA--------IERKSA--NDLIQ---SIIDGGLFDQVKRLKEAYSRPIMIVEGSL   82 (131)
T ss_dssp             HHHHTTCEEEEECCSS-CSEECSSSEE--------EEEEEH--HHHHH---HHHTTCHHHHHHHHHHHCSEEEEEEESCC
T ss_pred             HHHHCCCEEEEEECCC-CCEEEECCEE--------EEEecc--hhhhh---hhhcchHHHHHHHHHccCCceEEEEEech
Confidence            6788999999999999 8998876543        233321  11111   11224455667777667889999999997


Q ss_pred             hhHHHHHhhhHHHHHHHhhcCc--cEEEEEeCCcchhHHHHHHHHhh
Q 043303         1064 NFICTVMESSDGLYAAAASLGL--DLQLFCSNSSELTDEIIVSCIGN 1108 (1639)
Q Consensus      1064 ~Fls~vL~~~d~LYAAaaslGi--dlqlfiS~s~e~TdeIIls~I~~ 1108 (1639)
                      .-...+  +-+.++.|.+.+-+  ++.++.|.+.++|+.+| ..++.
T Consensus        83 ~~~~~~--~~~~i~~al~~~~~~~~~~vi~t~~~~~Ta~~l-~~l~~  126 (131)
T d1j23a_          83 YGIRNV--HPNAIRGAIAAVTVDFGVPIIFSSTPEETAQYI-FLIAK  126 (131)
T ss_dssp             TTCCSS--CHHHHHHHHHHHHHTSCCCEEEESSHHHHHHHH-HHHHH
T ss_pred             HHhccc--cHHHHHHHHHHHHHhcCcEEEEeCCHHHHHHHH-HHHHH
Confidence            433211  12334444433322  47899999999999997 55543

PyMOL of d1j23a_

>d2bgwa2 c.52.1.20 (A:16-148) XPF endonuclease {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure