Citrus Sinensis ID: 043390

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MSSIGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL
Secondary Structure (PSIPRED)
ccccccccccHHHHccHHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHHcccccccHHHHHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccEEEcccccEEEEEEEEcccHHHHHHHHHHcccHHHHHHHccccccccHHHHHHHccccHHHHHHHHHHccHHcEccccccccHHHHHHHHccHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MSSIGIEETDAKNKINSELYNALMIKQDEQKVIELCrkvpdhslcvftiydDTVLHVAAYTKKSDLVMKLLDelpdqsldKMTRQNkagntilhetassshalpvadklfrkapgllgmrnnnggtallgaahngkIEIFNflagknfrl
Flexible Loop (DISEMBL)
mssigieetdaknkINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILhetassshalpvADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIfnflagknfrl
Low Complexity Region (SEG)
MSSIGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL
Disordered region (IsUnstruct)
*****************ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLD********************************VADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAG*****
Disordered Region (DISOPRED)
***********KNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNF**
Disordered Region (DISEMBL)
********TDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL
Disordered Region (DISPRO)
*****IEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSIGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
224115944	579	predicted protein [Populus trichocarpa]	0.966	0.250	0.616	2e-43
224115940	581	predicted protein [Populus trichocarpa]	0.966	0.249	0.582	5e-42
224115932	581	predicted protein [Populus trichocarpa]	0.966	0.249	0.575	7e-42
224115930	551	predicted protein [Populus trichocarpa]	0.966	0.263	0.589	9e-41
224087973	139	predicted protein [Populus trichocarpa]	0.9	0.971	0.610	4e-39
224115928	280	predicted protein [Populus trichocarpa]	0.92	0.492	0.597	4e-39
359496086	1514	PREDICTED: uncharacterized protein LOC10	0.873	0.086	0.5	2e-28
147841570	636	hypothetical protein VITISV_039462 [Viti	0.873	0.205	0.5	2e-28
147866140	663	hypothetical protein VITISV_014521 [Viti	0.913	0.206	0.457	1e-22
147787231	194	hypothetical protein VITISV_012050 [Viti	0.9	0.695	0.421	4e-19

>gi|224115944|ref|XP_002317167.1| predicted protein [Populus trichocarpa] gi|222860232|gb|EEE97779.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 111/146 (76%), Gaps = 1/146 (0%)

Query: 1   MSSIGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAY 60
           + S G  E D K KIN  LY ALM K ++ +V ELC+K+ DH+L V T+ DDTVLH+A Y
Sbjct: 4   LMSPGTIEIDHKQKINGNLYYALM-KGNKNRVAELCQKIQDHALHVITVNDDTVLHMATY 62

Query: 61  TKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMR 120
            K++ LV KLLDELPD  LDK+TRQN+ GNTILHETA+S+H + +ADKL +KAPGLLGMR
Sbjct: 63  AKEASLVEKLLDELPDHHLDKLTRQNRVGNTILHETATSNHTVALADKLLKKAPGLLGMR 122

Query: 121 NNNGGTALLGAAHNGKIEIFNFLAGK 146
           N+NG TAL  AA  GK ++FNFLA K
Sbjct: 123 NHNGETALFRAARYGKTDMFNFLAAK 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115940|ref|XP_002317166.1| predicted protein [Populus trichocarpa] gi|222860231|gb|EEE97778.1| predicted protein [Populus trichocarpa]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 85/146 (58%), Positives = 110/146 (75%), Gaps = 1/146 (0%)

Query: 1   MSSIGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAY 60
           M S   +  D K KIN  LY AL +  +++ V++LC+++ DH+L V T+ DDTVLH+A Y
Sbjct: 1   MGSCNADVLDTKQKINGRLYKAL-VTCNKKDVVDLCQRISDHALHVITVNDDTVLHMATY 59

Query: 61  TKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMR 120
            K++ LV +LLDELPD  +DK+TRQN+ GNTILHETA+S HAL VADKL ++APGLLGMR
Sbjct: 60  AKEAALVERLLDELPDHHVDKLTRQNRVGNTILHETATSKHALAVADKLLKRAPGLLGMR 119

Query: 121 NNNGGTALLGAAHNGKIEIFNFLAGK 146
           N+NG TAL  AA  GK ++FNFLA K
Sbjct: 120 NHNGETALFRAARYGKTDMFNFLAAK 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115932|ref|XP_002317164.1| predicted protein [Populus trichocarpa] gi|222860229|gb|EEE97776.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (442), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 111/146 (76%), Gaps = 1/146 (0%)

Query: 1   MSSIGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAY 60
           M S   +  D K KIN  LY AL +  +++ V++LC+++ DH+L V T+ DDTVLH+A Y
Sbjct: 1   MGSCNADVLDTKQKINGRLYKAL-VTCNKKDVVDLCQRISDHALHVITVNDDTVLHMATY 59

Query: 61  TKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMR 120
            K++ LV +LLDELPD  +DK+TRQN+ GNTILHETA+S+HA+ VADKL ++APGLLGMR
Sbjct: 60  AKEAALVERLLDELPDHHVDKLTRQNRVGNTILHETATSNHAISVADKLLKRAPGLLGMR 119

Query: 121 NNNGGTALLGAAHNGKIEIFNFLAGK 146
           N+NG TAL  AA  GK ++FNFLA K
Sbjct: 120 NHNGETALFRAARYGKTDMFNFLAAK 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115930|ref|XP_002317163.1| predicted protein [Populus trichocarpa] gi|222860228|gb|EEE97775.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (433), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 86/146 (58%), Positives = 107/146 (73%), Gaps = 1/146 (0%)

Query: 1   MSSIGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAY 60
           + S G  E D K K N  LY ALM K ++++V ELC+K+ DH+L V T+ DDTVLH+A Y
Sbjct: 4   LMSPGTNEIDRKQKTNGNLYYALM-KGNKKRVAELCQKIQDHALHVITVNDDTVLHMATY 62

Query: 61  TKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMR 120
            K++ LV  LLD LP   LDK+TRQN  GNTILHETA+S+H + +ADKL +KAPGLLGMR
Sbjct: 63  AKEASLVENLLDALPSHHLDKLTRQNGVGNTILHETATSNHTVALADKLLKKAPGLLGMR 122

Query: 121 NNNGGTALLGAAHNGKIEIFNFLAGK 146
           N+NG TAL  AA  GK ++FNFLA K
Sbjct: 123 NHNGETALFRAARYGKTDMFNFLAAK 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087973|ref|XP_002335116.1| predicted protein [Populus trichocarpa] gi|222832892|gb|EEE71369.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 103/136 (75%), Gaps = 1/136 (0%)

Query: 1   MSSIGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAY 60
           + S G  E D K KIN  LY ALM K ++ +V ELC+K+ DH+L V T+ DDTVLH+A Y
Sbjct: 4   LMSPGTIEIDHKQKINGNLYYALM-KGNKNRVAELCQKIQDHALHVITVNDDTVLHMATY 62

Query: 61  TKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMR 120
            K++ LV KLLDELPD  LDK+TRQN+ GNTILHETA+S+H + +ADKL ++APGLLGMR
Sbjct: 63  AKEASLVEKLLDELPDHHLDKLTRQNRVGNTILHETATSNHTVAIADKLLKRAPGLLGMR 122

Query: 121 NNNGGTALLGAAHNGK 136
           N+NG TAL  AA  GK
Sbjct: 123 NHNGETALFRAARYGK 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115928|ref|XP_002317162.1| predicted protein [Populus trichocarpa] gi|222860227|gb|EEE97774.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/139 (59%), Positives = 105/139 (75%), Gaps = 1/139 (0%)

Query: 8   ETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLV 67
           E D K KIN +LY ALM + + + V +LC ++ DH+L V T+ DDTVLH+A Y K++ LV
Sbjct: 62  EIDPKQKINGDLYCALM-EGNTKSVADLCLRLQDHALHVITVTDDTVLHMATYAKEASLV 120

Query: 68  MKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTA 127
            +LLDELPD  LDK+TRQN  GNTILHETA+S+H + VA KL +KAPGLLGMRN+NG TA
Sbjct: 121 EQLLDELPDHHLDKLTRQNGVGNTILHETATSNHTVAVARKLLKKAPGLLGMRNHNGETA 180

Query: 128 LLGAAHNGKIEIFNFLAGK 146
           L  AA  GK ++F+FLA K
Sbjct: 181 LFRAARYGKTDMFDFLAAK 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496086|ref|XP_003635148.1| PREDICTED: uncharacterized protein LOC100853163 [Vitis vinifera]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 92/132 (69%), Gaps = 1/132 (0%)

Query: 13  NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLD 72
           +K+N ELY ALM K DE++VI+LC  +P+  + + TI+ DTVLH+A Y+K++DLV+KLL+
Sbjct: 6   DKLNRELYKALM-KGDEKEVIQLCLSIPEGPVHIMTIHMDTVLHMATYSKQADLVLKLLE 64

Query: 73  ELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAA 132
            LP+  L+K+T QN AGNTILHE A+S+     A ++  KAP LL + N  G T +  AA
Sbjct: 65  NLPETHLNKLTLQNDAGNTILHEAATSNSTTNAAREMLNKAPELLSLSNFLGETPIFRAA 124

Query: 133 HNGKIEIFNFLA 144
             GK  +F FLA
Sbjct: 125 RYGKTRVFEFLA 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841570|emb|CAN77609.1| hypothetical protein VITISV_039462 [Vitis vinifera]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 92/132 (69%), Gaps = 1/132 (0%)

Query: 13  NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLD 72
           +K+N ELY ALM K DE++VI+LC  +P+  + + TI+ DTVLH+A Y+K++DLV+KLL+
Sbjct: 6   DKLNRELYKALM-KGDEKEVIQLCLSIPEGPVHIMTIHMDTVLHMATYSKQADLVLKLLE 64

Query: 73  ELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAA 132
            LP+  L+K+T QN AGNTILHE A+S+     A ++  KAP LL + N  G T +  AA
Sbjct: 65  NLPETHLNKLTLQNDAGNTILHEAATSNSTTNAAREMLNKAPELLSLSNFLGETPIFRAA 124

Query: 133 HNGKIEIFNFLA 144
             GK  +F FLA
Sbjct: 125 RYGKTRVFEFLA 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866140|emb|CAN79844.1| hypothetical protein VITISV_014521 [Vitis vinifera]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 89/142 (62%), Gaps = 5/142 (3%)

Query: 6   IEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSD 65
           I++ DA   +N  LY+A M + DE KVI+LC K  +  L   TI+ DTV+HVA   K+SD
Sbjct: 4   IKDEDA---LNGHLYHAFM-EGDEAKVIKLCGKTAEGPLHKMTIHKDTVIHVACDAKRSD 59

Query: 66  LVMKLLDELP-DQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNG 124
           LV+KLL+ LP D    ++T +N   NTILHE A+ S  LP A+++ R+ P LL  RN  G
Sbjct: 60  LVLKLLEMLPKDHDPRQLTVKNDVENTILHEAATDSCLLPAAEEMLRRXPELLTKRNVYG 119

Query: 125 GTALLGAAHNGKIEIFNFLAGK 146
              L  AA NG+ ++F FL G+
Sbjct: 120 EIPLFCAARNGEKKMFKFLVGE 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787231|emb|CAN69134.1| hypothetical protein VITISV_012050 [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 91/140 (65%), Gaps = 5/140 (3%)

Query: 8   ETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLV 67
           +++ K +I ++LY AL  K+D + V E+CR++P+  L   +IY+DTVLH+A ++K+ DLV
Sbjct: 6   DSEQKERI-AKLYKALR-KKDNEHVAEVCRELPEGPLQRISIYNDTVLHMATHSKQKDLV 63

Query: 68  MKLLDELP-DQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGT 126
           +KLL+ LP D+ L     +N  GNT+LHE A+S     VA++L  +   LL   N++G T
Sbjct: 64  LKLLNMLPADRQLSDF--KNNDGNTMLHEVATSDAMKDVAEELLTRDSDLLIASNDSGET 121

Query: 127 ALLGAAHNGKIEIFNFLAGK 146
            +  AA  G+ E+F FLA K
Sbjct: 122 PIFCAARYGQTEMFXFLAXK 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
WB|WBGene00016030	850	C24A1.3 [Caenorhabditis elegan	0.713	0.125	0.274	6.1e-06
ZFIN|ZDB-GENE-030916-4	728	ankrd6b "ankyrin repeat domain	0.54	0.111	0.386	1.7e-05
UNIPROTKB|D6RAZ0	816	MIB2 "E3 ubiquitin-protein lig	0.846	0.155	0.316	2.5e-05
UNIPROTKB|H0YAM8	829	MIB2 "E3 ubiquitin-protein lig	0.846	0.153	0.316	2.6e-05
UNIPROTKB|F2Z2L2	919	MIB2 "E3 ubiquitin-protein lig	0.846	0.138	0.316	2.9e-05
UNIPROTKB|E9PD12	969	MIB2 "E3 ubiquitin-protein lig	0.846	0.131	0.316	3.1e-05
UNIPROTKB|E9PHQ1	1005	MIB2 "E3 ubiquitin-protein lig	0.846	0.126	0.316	3.3e-05
UNIPROTKB|Q96AX9	1013	MIB2 "E3 ubiquitin-protein lig	0.846	0.125	0.316	3.3e-05
UNIPROTKB|J3KNZ7	1056	MIB2 "E3 ubiquitin-protein lig	0.846	0.120	0.316	3.5e-05
UNIPROTKB|E9PGU1	1066	MIB2 "E3 ubiquitin-protein lig	0.846	0.119	0.316	3.5e-05

WB|WBGene00016030 C24A1.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 117 (46.2 bits), Expect = 6.1e-06, P = 6.1e-06
 Identities = 31/113 (27%), Positives = 55/113 (48%)

Query:    32 VIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNT 91
             +I+  R   D  +C   +Y DT LH++ Y+ + D+V  +LD  P   ++    +N    T
Sbjct:   268 LIKQVRGTNDR-ICARNLYGDTALHLSCYSGRLDIVKSILDSSPTNIVNM---ENVFSET 323

Query:    92 ILHETASSSHALPVADKLFRKAPGL-LGMRNNNGGTALLGAAHNGKIEIFNFL 143
              LH   +   ++ +   L  K PG+    +  +G TAL  A ++G + I  +L
Sbjct:   324 PLHAACTGGKSIELVSFLM-KYPGVDPNYQGQDGHTALHSACYHGHLRIVQYL 375

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0043652 "engulfment of apoptotic cell" evidence=IMP

ZFIN|ZDB-GENE-030916-4 ankrd6b "ankyrin repeat domain 6b" [Danio rerio (taxid:7955)]

 Score = 112 (44.5 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 34/88 (38%), Positives = 44/88 (50%)

Query:    51 DDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLF 110
             D T LH AA    +D++  L+ E    +LD   RQ+K GNT LHE A   H      KL 
Sbjct:    77 DQTALHRAAVVGNTDVISALVQE--GCALD---RQDKDGNTALHEAAW--HGFSQTVKLL 129

Query:   111 RKAPGLLGMRNNNGGTALLGAAHNGKIE 138
              KA   +  +N  G TAL  A  NG ++
Sbjct:   130 VKAGANVHAKNKAGNTALHLACQNGHVQ 157

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0030877 "beta-catenin destruction complex" evidence=NAS

GO:0048264 "determination of ventral identity" evidence=IMP

GO:0046330 "positive regulation of JNK cascade" evidence=IDA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IGI

GO:0008013 "beta-catenin binding" evidence=NAS

GO:0001702 "gastrulation with mouth forming second" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

UNIPROTKB|D6RAZ0 MIB2 "E3 ubiquitin-protein ligase MIB2" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 43/136 (31%), Positives = 67/136 (49%)

Query:    10 DAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLH--VAAYTKKSDLV 67
             DA N   S   +  + +   + V  LC +  D +L     + DT LH  ++A T  S +V
Sbjct:   539 DAINSTQSTALHVAVQRGFLEVVRALCERGCDVNLP--DAHSDTPLHSAISAGTGASGIV 596

Query:    68 MKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTA 127
              ++L E+P+  +D +T  N  G T+LH  +   HAL V  K+  +A  L+  +  +G TA
Sbjct:   597 -EVLTEVPN--ID-VTATNSQGFTLLHHASLKGHALAVR-KILARARQLVDAKKEDGFTA 651

Query:   128 LLGAAHNGKIEIFNFL 143
             L  AA N   E+   L
Sbjct:   652 LHLAALNNHREVAQIL 667

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|H0YAM8 MIB2 "E3 ubiquitin-protein ligase MIB2" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 43/136 (31%), Positives = 67/136 (49%)

Query:    10 DAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLH--VAAYTKKSDLV 67
             DA N   S   +  + +   + V  LC +  D +L     + DT LH  ++A T  S +V
Sbjct:   399 DAINSTQSTALHVAVQRGFLEVVRALCERGCDVNLP--DAHSDTPLHSAISAGTGASGIV 456

Query:    68 MKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTA 127
              ++L E+P+  +D +T  N  G T+LH  +   HAL V  K+  +A  L+  +  +G TA
Sbjct:   457 -EVLTEVPN--ID-VTATNSQGFTLLHHASLKGHALAVR-KILARARQLVDAKKEDGFTA 511

Query:   128 LLGAAHNGKIEIFNFL 143
             L  AA N   E+   L
Sbjct:   512 LHLAALNNHREVAQIL 527

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F2Z2L2 MIB2 "E3 ubiquitin-protein ligase MIB2" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 43/136 (31%), Positives = 67/136 (49%)

Query:    10 DAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLH--VAAYTKKSDLV 67
             DA N   S   +  + +   + V  LC +  D +L     + DT LH  ++A T  S +V
Sbjct:   489 DAINSTQSTALHVAVQRGFLEVVRALCERGCDVNLP--DAHSDTPLHSAISAGTGASGIV 546

Query:    68 MKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTA 127
              ++L E+P+  +D +T  N  G T+LH  +   HAL V  K+  +A  L+  +  +G TA
Sbjct:   547 -EVLTEVPN--ID-VTATNSQGFTLLHHASLKGHALAVR-KILARARQLVDAKKEDGFTA 601

Query:   128 LLGAAHNGKIEIFNFL 143
             L  AA N   E+   L
Sbjct:   602 LHLAALNNHREVAQIL 617

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E9PD12 MIB2 "E3 ubiquitin-protein ligase MIB2" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 3.1e-05, P = 3.1e-05
 Identities = 43/136 (31%), Positives = 67/136 (49%)

Query:    10 DAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLH--VAAYTKKSDLV 67
             DA N   S   +  + +   + V  LC +  D +L     + DT LH  ++A T  S +V
Sbjct:   539 DAINSTQSTALHVAVQRGFLEVVRALCERGCDVNLP--DAHSDTPLHSAISAGTGASGIV 596

Query:    68 MKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTA 127
              ++L E+P+  +D +T  N  G T+LH  +   HAL V  K+  +A  L+  +  +G TA
Sbjct:   597 -EVLTEVPN--ID-VTATNSQGFTLLHHASLKGHALAVR-KILARARQLVDAKKEDGFTA 651

Query:   128 LLGAAHNGKIEIFNFL 143
             L  AA N   E+   L
Sbjct:   652 LHLAALNNHREVAQIL 667

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

UNIPROTKB|E9PHQ1 MIB2 "E3 ubiquitin-protein ligase MIB2" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 43/136 (31%), Positives = 67/136 (49%)

Query:    10 DAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLH--VAAYTKKSDLV 67
             DA N   S   +  + +   + V  LC +  D +L     + DT LH  ++A T  S +V
Sbjct:   575 DAINSTQSTALHVAVQRGFLEVVRALCERGCDVNLP--DAHSDTPLHSAISAGTGASGIV 632

Query:    68 MKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTA 127
              ++L E+P+  +D +T  N  G T+LH  +   HAL V  K+  +A  L+  +  +G TA
Sbjct:   633 -EVLTEVPN--ID-VTATNSQGFTLLHHASLKGHALAVR-KILARARQLVDAKKEDGFTA 687

Query:   128 LLGAAHNGKIEIFNFL 143
             L  AA N   E+   L
Sbjct:   688 LHLAALNNHREVAQIL 703

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q96AX9 MIB2 "E3 ubiquitin-protein ligase MIB2" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 43/136 (31%), Positives = 67/136 (49%)

Query:    10 DAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLH--VAAYTKKSDLV 67
             DA N   S   +  + +   + V  LC +  D +L     + DT LH  ++A T  S +V
Sbjct:   583 DAINSTQSTALHVAVQRGFLEVVRALCERGCDVNLP--DAHSDTPLHSAISAGTGASGIV 640

Query:    68 MKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTA 127
              ++L E+P+  +D +T  N  G T+LH  +   HAL V  K+  +A  L+  +  +G TA
Sbjct:   641 -EVLTEVPN--ID-VTATNSQGFTLLHHASLKGHALAVR-KILARARQLVDAKKEDGFTA 695

Query:   128 LLGAAHNGKIEIFNFL 143
             L  AA N   E+   L
Sbjct:   696 LHLAALNNHREVAQIL 711

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IMP

GO:0004871 "signal transducer activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|J3KNZ7 MIB2 "E3 ubiquitin-protein ligase MIB2" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 43/136 (31%), Positives = 67/136 (49%)

Query:    10 DAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLH--VAAYTKKSDLV 67
             DA N   S   +  + +   + V  LC +  D +L     + DT LH  ++A T  S +V
Sbjct:   626 DAINSTQSTALHVAVQRGFLEVVRALCERGCDVNLP--DAHSDTPLHSAISAGTGASGIV 683

Query:    68 MKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTA 127
              ++L E+P+  +D +T  N  G T+LH  +   HAL V  K+  +A  L+  +  +G TA
Sbjct:   684 -EVLTEVPN--ID-VTATNSQGFTLLHHASLKGHALAVR-KILARARQLVDAKKEDGFTA 738

Query:   128 LLGAAHNGKIEIFNFL 143
             L  AA N   E+   L
Sbjct:   739 LHLAALNNHREVAQIL 754

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E9PGU1 MIB2 "E3 ubiquitin-protein ligase MIB2" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 43/136 (31%), Positives = 67/136 (49%)

Query:    10 DAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLH--VAAYTKKSDLV 67
             DA N   S   +  + +   + V  LC +  D +L     + DT LH  ++A T  S +V
Sbjct:   636 DAINSTQSTALHVAVQRGFLEVVRALCERGCDVNLP--DAHSDTPLHSAISAGTGASGIV 693

Query:    68 MKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTA 127
              ++L E+P+  +D +T  N  G T+LH  +   HAL V  K+  +A  L+  +  +G TA
Sbjct:   694 -EVLTEVPN--ID-VTATNSQGFTLLHHASLKGHALAVR-KILARARQLVDAKKEDGFTA 748

Query:   128 LLGAAHNGKIEIFNFL 143
             L  AA N   E+   L
Sbjct:   749 LHLAALNNHREVAQIL 764

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 50  YDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKL 109
              T LH+AA     ++V  LL+   D +      ++  G T LH  A + H L +   L
Sbjct: 6   DGRTPLHLAASNGHLEVVKLLLENGADVNA-----KDNDGRTPLHLAAKNGH-LEIVKLL 59

Query: 110 FRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
             K    +  R+ +G T L  AA NG +++   L
Sbjct: 60  LEKGA-DVNARDKDGNTPLHLAARNGNLDVVKLL 92

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 53  TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRK 112
           T LH+AA     ++V  LL++  D     +  ++K GNT LH  A + + L V  KL  K
Sbjct: 42  TPLHLAAKNGHLEIVKLLLEKGAD-----VNARDKDGNTPLHLAARNGN-LDVV-KLLLK 94

Query: 113 APGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
               +  R+ +G T L  AA NG +E+   L
Sbjct: 95  HGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 9/106 (8%)

Query: 43  SLCVFTIYDDTVLHVAAYTKKS-----DLVMKLLDELPDQSLDKMTRQNKAGNTILHETA 97
            +       DT LH+AA          ++   LL+   D  ++    +++ GNT LH  A
Sbjct: 98  DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN--NLRDEDGNTPLHWAA 155

Query: 98  SSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
            +  A     +L  +A      RN+ G TAL  AA NG+IE+   L
Sbjct: 156 LNGDAD--IVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLL 199

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.93
PHA02791	284	ankyrin-like protein; Provisional	99.93
PHA02741	169	hypothetical protein; Provisional	99.92
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.92
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.92
PHA02874	434	ankyrin repeat protein; Provisional	99.91
PHA02875	413	ankyrin repeat protein; Provisional	99.91
KOG0508	615	consensus Ankyrin repeat protein [General function	99.91
PHA02736	154	Viral ankyrin protein; Provisional	99.91
PHA02874	434	ankyrin repeat protein; Provisional	99.91
PHA02878	477	ankyrin repeat protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG0508	615	consensus Ankyrin repeat protein [General function	99.9
PHA02878	477	ankyrin repeat protein; Provisional	99.9
PHA03100	480	ankyrin repeat protein; Provisional	99.9
PHA02859	209	ankyrin repeat protein; Provisional	99.9
PHA03100	480	ankyrin repeat protein; Provisional	99.9
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.89
PHA02859	209	ankyrin repeat protein; Provisional	99.89
PHA02795	437	ankyrin-like protein; Provisional	99.89
PHA02798	489	ankyrin-like protein; Provisional	99.89
PHA03095	471	ankyrin-like protein; Provisional	99.89
PHA03095	471	ankyrin-like protein; Provisional	99.88
KOG0510	929	consensus Ankyrin repeat protein [General function	99.88
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.88
PHA02989	494	ankyrin repeat protein; Provisional	99.88
PHA02876	682	ankyrin repeat protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
PHA02946	446	ankyin-like protein; Provisional	99.87
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.87
KOG0510	929	consensus Ankyrin repeat protein [General function	99.87
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.86
PHA02876	682	ankyrin repeat protein; Provisional	99.86
PHA02989	494	ankyrin repeat protein; Provisional	99.86
PHA02946	446	ankyin-like protein; Provisional	99.85
PHA02798	489	ankyrin-like protein; Provisional	99.85
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.84
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.84
PHA02730	672	ankyrin-like protein; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.82
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.82
PHA02795	437	ankyrin-like protein; Provisional	99.81
PHA02917	661	ankyrin-like protein; Provisional	99.81
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.79
PHA02884	300	ankyrin repeat protein; Provisional	99.79
KOG0514	452	consensus Ankyrin repeat protein [General function	99.78
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.78
PHA02743	166	Viral ankyrin protein; Provisional	99.78
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.78
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.77
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
PHA02730	672	ankyrin-like protein; Provisional	99.77
KOG0514	452	consensus Ankyrin repeat protein [General function	99.76
PHA02792	631	ankyrin-like protein; Provisional	99.76
PHA02917	661	ankyrin-like protein; Provisional	99.76
PHA02736	154	Viral ankyrin protein; Provisional	99.75
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.75
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.73
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.73
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.73
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.73
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.72
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.72
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.72
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.7
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.7
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.68
PHA02792	631	ankyrin-like protein; Provisional	99.68
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.68
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.67
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.66
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.65
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.64
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.64
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.63
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.62
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.61
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.61
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.57
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.57
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.37
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.35
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.34
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.28
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.23
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.21
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.16
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.15
PF13606	30	Ank_3: Ankyrin repeat	99.1
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.09
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	99.06
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.06
KOG0522	560	consensus Ankyrin repeat protein [General function	99.05
PF13606	30	Ank_3: Ankyrin repeat	98.99
KOG0522	560	consensus Ankyrin repeat protein [General function	98.98
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.97
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.92
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.91
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.77
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.7
KOG2384	223	consensus Major histocompatibility complex protein	98.65
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.64
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.6
KOG0511	516	consensus Ankyrin repeat protein [General function	98.53
KOG0511	516	consensus Ankyrin repeat protein [General function	98.53
KOG2384	223	consensus Major histocompatibility complex protein	98.46
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.38
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.76
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.56
KOG2505	591	consensus Ankyrin repeat protein [General function	97.51
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.47
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.38
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.99
KOG2505	591	consensus Ankyrin repeat protein [General function	96.85
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.87
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.8
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.96
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	88.01
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	83.35

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.4e-29  Score=153.44  Aligned_cols=135  Identities=21%  Similarity=0.216  Sum_probs=95.7

Q ss_pred             cccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccC
Q 043390            6 IEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQ   85 (150)
Q Consensus         6 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~   85 (150)
                      +...+.++...++||.|+. .|+.+.|+.|+.+ ++.+++..+..|.||||+|+..|+.+++++|+.+|+.     +..+
T Consensus        63 v~~ddkDdaGWtPlhia~s-~g~~evVk~Ll~r-~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~-----i~~k  135 (226)
T KOG4412|consen   63 VKPDDKDDAGWTPLHIAAS-NGNDEVVKELLNR-SGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-----IRIK  135 (226)
T ss_pred             CCCCCccccCCchhhhhhh-cCcHHHHHHHhcC-CCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCC-----Cccc
Confidence            3344445556666777777 7777777777765 2444666777777777777777777777777777766     5677


Q ss_pred             CCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           86 NKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        86 ~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      |..|.||||.|+..|.. +++++|+..++. +|..|..|+||||.|...|+.+....|+++|+.
T Consensus       136 D~~~qtplHRAAavGkl-kvie~Li~~~a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd  197 (226)
T KOG4412|consen  136 DKQGQTPLHRAAAVGKL-KVIEYLISQGAP-LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGAD  197 (226)
T ss_pred             ccccCchhHHHHhccch-hhHHHHHhcCCC-CCcccccCccHHHHHHhccCchHHHHHHHhccc
Confidence            77777777777777776 777777777754 777777777777777777777777777777764

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.1e-29  Score=154.38  Aligned_cols=128  Identities=24%  Similarity=0.248  Sum_probs=116.2

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhh-CCCCcccccccCCCCCChH
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDE-LPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~~g~t~   92 (150)
                      ....+||+|+. .|+.+.+..|+. -++..++-+|..||||||+|+..|+.++|+.|+.. |++     +|..+..|.||
T Consensus        37 D~Rt~LHwa~S-~g~~eiv~fLls-q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad-----vna~tn~G~T~  109 (226)
T KOG4412|consen   37 DGRTPLHWACS-FGHVEIVYFLLS-QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD-----VNATTNGGQTC  109 (226)
T ss_pred             cCCceeeeeee-cCchhHHHHHHh-cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC-----cceecCCCcce
Confidence            45667999999 999999888776 56677888899999999999999999999999998 777     79999999999


Q ss_pred             HHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           93 LHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        93 l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      ||+|+..|.. +++.+|++.|+. ++.+|..|+||||.|+..|..+++++|+..|+.+
T Consensus       110 LHyAagK~r~-eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~  165 (226)
T KOG4412|consen  110 LHYAAGKGRL-EIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPL  165 (226)
T ss_pred             ehhhhcCChh-hHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHhcCCCC
Confidence            9999999998 999999999965 9999999999999999999999999999998753

>PHA02791 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.7e-25  Score=149.93  Aligned_cols=124  Identities=17%  Similarity=0.013  Sum_probs=76.5

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCC--------
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNK--------   87 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~--------   87 (150)
                      .++||.|+. .|+.+.++.|+..+.+  ++..|..|+||||+|+..++.+++++|+..|++.     +.++.        
T Consensus        62 ~TpLh~Aa~-~g~~eiV~lLL~~Gad--vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-----n~~~~~g~~TpL~  133 (284)
T PHA02791         62 EFPLHQAAT-LEDTKIVKILLFSGMD--DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-----MFYGKTGWKTSFY  133 (284)
T ss_pred             CCHHHHHHH-CCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-----CccCCCCCcHHHH
Confidence            345666666 6666666666665433  4556666666666666666666666666666552     22222        


Q ss_pred             -------------------------CCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCH-HHHHHHcCCHHHHH
Q 043390           88 -------------------------AGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTA-LLGAAHNGKIEIFN  141 (150)
Q Consensus        88 -------------------------~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tp-l~~a~~~g~~~~~~  141 (150)
                                               .|.||||+|+..|+. +++++|++.|+. ++.++..|.|| ||+|+..|+.++++
T Consensus       134 ~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~-eiv~lLL~~gAd-~n~~d~~g~t~~L~~Aa~~~~~e~v~  211 (284)
T PHA02791        134 HAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHV-DMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDLEMLQ  211 (284)
T ss_pred             HHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCH-HHHHHHHHCCCC-CCcccCCCCChHHHHHHHcCCHHHHH
Confidence                                     356666666666664 666666666643 66666666655 66666666666666


Q ss_pred             HHHhccCC
Q 043390          142 FLAGKNFR  149 (150)
Q Consensus       142 ~L~~~~~~  149 (150)
                      +|+++|+.
T Consensus       212 lLl~~Ga~  219 (284)
T PHA02791        212 ALFKYDIN  219 (284)
T ss_pred             HHHHCCCC
Confidence            66666654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=5e-25  Score=138.68  Aligned_cols=137  Identities=18%  Similarity=0.189  Sum_probs=111.2

Q ss_pred             ccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHh--CCCCCccccccCCCcHHHHHHhhCChH---HHHHHHhhCCCCcc
Q 043390            5 GIEETDAKNKINSELYNALMIKQDEQKVIELCRK--VPDHSLCVFTIYDDTVLHVAAYTKKSD---LVMKLLDELPDQSL   79 (150)
Q Consensus         5 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~--~~~~~~~~~~~~g~~~L~~a~~~~~~~---~v~~ll~~~~~~~~   79 (150)
                      +++...........++.|++ .|+.+.+++++..  .....++.+|..|+||||+|+..++.+   ++++|+..|++   
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~-~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad---   85 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICR-TGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD---   85 (166)
T ss_pred             chHHhhhccCCCcHHHHHHH-cCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC---
Confidence            34444444555567999999 9999755554322  112336678999999999999998865   48999999998   


Q ss_pred             cccccCC-CCCChHHHHHHHcCCcHHHHHHHHh-hCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           80 DKMTRQN-KAGNTILHETASSSHALPVADKLFR-KAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        80 ~~~~~~~-~~g~t~l~~a~~~g~~~~~~~~Ll~-~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                        ++.++ ..|.||||+|+..|+. +++++|+. .+. +++.++..|.||||+|+..++.+++++|+++|+.
T Consensus        86 --in~~d~~~g~TpLh~A~~~g~~-~iv~~Ll~~~ga-d~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~  153 (166)
T PHA02743         86 --INARELGTGNTLLHIAASTKNY-ELAEWLCRQLGV-NLGAINYQHETAYHIAYKMRDRRMMEILRANGAV  153 (166)
T ss_pred             --CCCCCCCCCCcHHHHHHHhCCH-HHHHHHHhccCC-CccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence              68888 5899999999999996 99999996 564 5999999999999999999999999999999976

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.93  E-value=6.9e-25  Score=155.96  Aligned_cols=126  Identities=26%  Similarity=0.196  Sum_probs=91.2

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      ..++||.|+. .|+.+.++.++..+... .+..+..|.||||+|+..++.+++++|++.|++     ++.++..|.||||
T Consensus        68 ~~t~L~~A~~-~g~~~~v~~Ll~~~~~~-~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad-----~~~~~~~g~tpLh  140 (413)
T PHA02875         68 IESELHDAVE-EGDVKAVEELLDLGKFA-DDVFYKDGMTPLHLATILKKLDIMKLLIARGAD-----PDIPNTDKFSPLH  140 (413)
T ss_pred             cccHHHHHHH-CCCHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC-----CCCCCCCCCCHHH
Confidence            3455777777 77777766666654332 233456677888888888888888888888777     4667777788888


Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      +|+..|+. +++++|++.++. ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus       141 ~A~~~~~~-~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~  193 (413)
T PHA02875        141 LAVMMGDI-KGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN  193 (413)
T ss_pred             HHHHcCCH-HHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            88887775 788888877754 777777788888888888888888888877764

>PHA02791 ankyrin-like protein; Provisional

Probab=99.93  E-value=9.6e-25  Score=147.24  Aligned_cols=125  Identities=20%  Similarity=0.168  Sum_probs=104.1

Q ss_pred             hhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCCh
Q 043390           12 KNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNT   91 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t   91 (150)
                      +....++||.|+. .|+.+.++.|+..+...  +..  +|+||||+|+..|+.+++++|+..|++     ++.+|..|+|
T Consensus        27 D~~G~TpLh~Aa~-~g~~eiv~~Ll~~ga~~--n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gad-----vn~~d~~G~T   96 (284)
T PHA02791         27 DVHGHSALYYAIA-DNNVRLVCTLLNAGALK--NLL--ENEFPLHQAATLEDTKIVKILLFSGMD-----DSQFDDKGNT   96 (284)
T ss_pred             CCCCCcHHHHHHH-cCCHHHHHHHHHCcCCC--cCC--CCCCHHHHHHHCCCHHHHHHHHHCCCC-----CCCCCCCCCC
Confidence            3445677999999 99999999999886553  333  478999999999999999999999988     6889999999


Q ss_pred             HHHHHHHcCCcHHHHHHHHhhCCcccccccCCCC-CHHHHHHHcCCHHHHHHHHhccC
Q 043390           92 ILHETASSSHALPVADKLFRKAPGLLGMRNNNGG-TALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        92 ~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~-tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      |||+|+..|+. +++++|++.++. ++.++..|+ ||||+|+..|+.+++++|++++.
T Consensus        97 pLh~Aa~~g~~-eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~  152 (284)
T PHA02791         97 ALYYAVDSGNM-QTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP  152 (284)
T ss_pred             HHHHHHHcCCH-HHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCC
Confidence            99999999996 999999999865 776776664 67777777777777777777653

>PHA02741 hypothetical protein; Provisional

Probab=99.92  E-value=4e-24  Score=135.08  Aligned_cols=129  Identities=16%  Similarity=0.117  Sum_probs=110.5

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhC----CCCCccccccCCCcHHHHHHhhCC----hHHHHHHHhhCCCCccccccc
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKV----PDHSLCVFTIYDDTVLHVAAYTKK----SDLVMKLLDELPDQSLDKMTR   84 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~----~~~~~~~~~~~g~~~L~~a~~~~~----~~~v~~ll~~~~~~~~~~~~~   84 (150)
                      ....+.||.|+. .|+.+.++.++...    .+.+++.+|..|+||||+|+..++    .+++++|+..|++     ++.
T Consensus        19 ~~g~t~Lh~Aa~-~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-----in~   92 (169)
T PHA02741         19 SEGENFFHEAAR-CGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-----INA   92 (169)
T ss_pred             cCCCCHHHHHHH-cCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-----CCC
Confidence            445677999999 99999988876432    123467889999999999999998    5889999999998     688


Q ss_pred             CCC-CCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390           85 QNK-AGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        85 ~~~-~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      ++. .|+||||+|+..++. +++++|+...+.+++.+|..|+|||++|+..++.+++++|++.++
T Consensus        93 ~~~~~g~TpLh~A~~~~~~-~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDH-DLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCH-HHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            885 899999999999996 999999985334599999999999999999999999999998764

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.92  E-value=1.2e-24  Score=154.67  Aligned_cols=135  Identities=25%  Similarity=0.199  Sum_probs=95.8

Q ss_pred             ccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccc-cCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccc
Q 043390            5 GIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFT-IYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMT   83 (150)
Q Consensus         5 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~-~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~   83 (150)
                      +..+.+++......||+||. ++..+.++.+++++++  +|... .-+.||||+|+++|+..+|+.|+++|++     .+
T Consensus        68 g~~v~~~D~~g~tlLHWAAi-NNrl~v~r~li~~gad--vn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAd-----pt  139 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAI-NNRLDVARYLISHGAD--VNAIGGVLGSTPLHWAARNGHISVVDLLLQHGAD-----PT  139 (600)
T ss_pred             CcCCCCCCcCCccceeHHHH-cCcHHHHHHHHHcCCC--ccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCC-----Cc
Confidence            44455555566666777777 8888877777777655  44444 4566788888888888888888888887     36


Q ss_pred             cCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           84 RQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        84 ~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      .+|..|.+|+|+|++.|+. .++-+|+..+ .+++.+|.+|+|||++|+.+|....+..|++.|+.
T Consensus       140 ~~D~~G~~~lHla~~~~~~-~~vayll~~~-~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~  203 (600)
T KOG0509|consen  140 LKDKQGLTPLHLAAQFGHT-ALVAYLLSKG-ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS  203 (600)
T ss_pred             eecCCCCcHHHHHHHhCch-HHHHHHHHhc-ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc
Confidence            6777777777777777775 7777777777 34777777777777777777776666666666553

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.92  E-value=2.8e-24  Score=152.75  Aligned_cols=136  Identities=23%  Similarity=0.153  Sum_probs=86.3

Q ss_pred             Ccccccchhh-hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccc
Q 043390            3 SIGIEETDAK-NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDK   81 (150)
Q Consensus         3 s~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~   81 (150)
                      +.|+++.... ....++||+|++ +|+...+..|++.+++  ++.+|.+|.+|+|.|++.++.-++.+++.++++     
T Consensus        99 ~~gadvn~~gG~l~stPLHWAar-~G~~~vv~lLlqhGAd--pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d-----  170 (600)
T KOG0509|consen   99 SHGADVNAIGGVLGSTPLHWAAR-NGHISVVDLLLQHGAD--PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-----  170 (600)
T ss_pred             HcCCCccccCCCCCCCcchHHHH-cCcHHHHHHHHHcCCC--CceecCCCCcHHHHHHHhCchHHHHHHHHhccc-----
Confidence            4445544444 233445777777 7777766666666544  566677777777777777777777777777665     


Q ss_pred             cccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCccccccc-CCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390           82 MTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRN-NNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        82 ~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~-~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      ++.+|..|.||||+|+..|+. ..+..|+..++. +..+| ..|.||||+|+..|+..++++|++-|+
T Consensus       171 ~d~~D~~grTpLmwAaykg~~-~~v~~LL~f~a~-~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~  236 (600)
T KOG0509|consen  171 IDLRDNNGRTPLMWAAYKGFA-LFVRRLLKFGAS-LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGA  236 (600)
T ss_pred             CCCcCCCCCCHHHHHHHhccc-HHHHHHHHhccc-ccccccccCCchHHHHHhcCCcceEehhhhcCC
Confidence            466777777777777777764 446666666654 55555 667777777777777776664444443

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.5e-23  Score=149.93  Aligned_cols=96  Identities=19%  Similarity=0.214  Sum_probs=56.0

Q ss_pred             ccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCC
Q 043390           46 VFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGG  125 (150)
Q Consensus        46 ~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~  125 (150)
                      .++..|.||||+|+..|+.+++++|+..|++     ++.+|..|.||||+|+..|+. +++++|++.|+. ++..+..|.
T Consensus       119 ~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad-----~n~~d~~g~tpLh~A~~~~~~-~iv~~Ll~~g~~-~n~~~~~g~  191 (434)
T PHA02874        119 IKDAELKTFLHYAIKKGDLESIKMLFEYGAD-----VNIEDDNGCYPIHIAIKHNFF-DIIKLLLEKGAY-ANVKDNNGE  191 (434)
T ss_pred             CCCCCCccHHHHHHHCCCHHHHHHHHhCCCC-----CCCcCCCCCCHHHHHHHCCcH-HHHHHHHHCCCC-CCCCCCCCC
Confidence            3444555555555555555555555555555     355555666666666666664 666666666543 555556666


Q ss_pred             CHHHHHHHcCCHHHHHHHHhccC
Q 043390          126 TALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus       126 tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      ||||+|+..|+.+++++|++.|+
T Consensus       192 tpL~~A~~~g~~~iv~~Ll~~g~  214 (434)
T PHA02874        192 SPLHNAAEYGDYACIKLLIDHGN  214 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCC
Confidence            66666666666666666666554

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.7e-23  Score=147.15  Aligned_cols=126  Identities=17%  Similarity=0.126  Sum_probs=114.9

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHH
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTIL   93 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l   93 (150)
                      ...++||.|+. .|+.+.++.|++.+++  ++.++..|.||||+|+..|+.+++++|+.+|++     ++.+|..|.|||
T Consensus       101 ~g~tpL~~A~~-~~~~~iv~~Ll~~gad--~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~-----~~~~d~~g~TpL  172 (413)
T PHA02875        101 DGMTPLHLATI-LKKLDIMKLLIARGAD--PDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC-----LDIEDCCGCTPL  172 (413)
T ss_pred             CCCCHHHHHHH-hCCHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-----CCCCCCCCCCHH
Confidence            34567999999 9999999999998655  677899999999999999999999999999998     688999999999


Q ss_pred             HHHHHcCCcHHHHHHHHhhCCcccccccCCCC-CHHHHHHHcCCHHHHHHHHhccCC
Q 043390           94 HETASSSHALPVADKLFRKAPGLLGMRNNNGG-TALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        94 ~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~-tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      |+|+..|+. +++++|++.|++ ++..+..|. ||+++|+..|+.+++++|+++|+.
T Consensus       173 ~~A~~~g~~-eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad  227 (413)
T PHA02875        173 IIAMAKGDI-AICKMLLDSGAN-IDYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD  227 (413)
T ss_pred             HHHHHcCCH-HHHHHHHhCCCC-CCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcC
Confidence            999999996 999999999976 888888774 789999999999999999999986

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=2.1e-24  Score=149.23  Aligned_cols=130  Identities=25%  Similarity=0.283  Sum_probs=70.4

Q ss_pred             cccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccc
Q 043390            4 IGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMT   83 (150)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~   83 (150)
                      .|+++.+......++|..|+. .|+.+.+++|++++.+  +++.++.|.||||+||.+||.+++++|++.|++     +|
T Consensus       106 ~ga~VN~tT~TNStPLraACf-DG~leivKyLvE~gad--~~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD-----vn  177 (615)
T KOG0508|consen  106 RGASVNDTTRTNSTPLRAACF-DGHLEIVKYLVEHGAD--PEIANRHGHTCLMIACYKGHVDIAQYLLEQGAD-----VN  177 (615)
T ss_pred             hcCccccccccCCccHHHHHh-cchhHHHHHHHHcCCC--CcccccCCCeeEEeeeccCchHHHHHHHHhCCC-----cc
Confidence            344444444444445555555 5555555555555333  455555555555555555555555555555555     45


Q ss_pred             cCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHH
Q 043390           84 RQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLA  144 (150)
Q Consensus        84 ~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~  144 (150)
                      .++..|+|+||.|+..|+. +++++|+..|+. + .+|..|-|||..|+..|+.+++++|+
T Consensus       178 ~ks~kGNTALH~caEsG~v-divq~Ll~~ga~-i-~~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  178 AKSYKGNTALHDCAESGSV-DIVQLLLKHGAK-I-DVDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             hhcccCchHHHhhhhcccH-HHHHHHHhCCce-e-eecCCCCchHHHHhhhcchHHHHHHh
Confidence            5555555555555555554 555555555532 2 24444555555555555555555555

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.91  E-value=1.2e-23  Score=131.05  Aligned_cols=130  Identities=15%  Similarity=0.125  Sum_probs=105.0

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCC---CCccccccCCCcHHHHHHhhCCh---HHHHHHHhhCCCCcccccccCC-
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPD---HSLCVFTIYDDTVLHVAAYTKKS---DLVMKLLDELPDQSLDKMTRQN-   86 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~---~~~~~~~~~g~~~L~~a~~~~~~---~~v~~ll~~~~~~~~~~~~~~~-   86 (150)
                      ...++||.|++ .|+...+.........   ......|..|+||||+|+..++.   +++++|+..|++     ++.++ 
T Consensus        16 ~g~tpLh~A~~-~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-----in~~~~   89 (154)
T PHA02736         16 EGENILHYLCR-NGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-----INGKER   89 (154)
T ss_pred             CCCCHHHHHHH-hCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-----ccccCC
Confidence            35677999999 9985433222221111   12345688999999999999986   468899999998     68887 


Q ss_pred             CCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           87 KAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        87 ~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      ..|+||||+|+..|+. +++++|+...+.+++.++..|.||||+|+..|+.+++++|+++|++.
T Consensus        90 ~~g~T~Lh~A~~~~~~-~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         90 VFGNTPLHIAVYTQNY-ELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCCcHHHHHHHhCCH-HHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            5899999999999996 99999998633559999999999999999999999999999999863

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.91  E-value=4.2e-23  Score=147.68  Aligned_cols=136  Identities=18%  Similarity=0.182  Sum_probs=108.8

Q ss_pred             ccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCccccccc
Q 043390            5 GIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTR   84 (150)
Q Consensus         5 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~   84 (150)
                      |++....+....++||.|+. .|+.+.++.|+..+.+  ++.+|..|.||||+|+..++.+++++|+..|++     ++.
T Consensus       114 g~d~n~~~~~g~T~Lh~A~~-~~~~~~v~~Ll~~gad--~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~-----~n~  185 (434)
T PHA02874        114 GIDVNIKDAELKTFLHYAIK-KGDLESIKMLFEYGAD--VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY-----ANV  185 (434)
T ss_pred             cCCCCCCCCCCccHHHHHHH-CCCHHHHHHHHhCCCC--CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-----CCC
Confidence            33333444556678999999 9999999988887655  667888999999999999999999999999887     577


Q ss_pred             CCCCCChHHHHHHHcCCcHHHHHHHHhhCCc------------------------------ccccccCCCCCHHHHHHHc
Q 043390           85 QNKAGNTILHETASSSHALPVADKLFRKAPG------------------------------LLGMRNNNGGTALLGAAHN  134 (150)
Q Consensus        85 ~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~------------------------------~~~~~~~~g~tpl~~a~~~  134 (150)
                      ++..|.||||+|+..|+. +++++|++.++.                              +++.+|..|.||||+|+..
T Consensus       186 ~~~~g~tpL~~A~~~g~~-~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~  264 (434)
T PHA02874        186 KDNNGESPLHNAAEYGDY-ACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINP  264 (434)
T ss_pred             CCCCCCCHHHHHHHcCCH-HHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhc
Confidence            888899999999999986 899999887632                              2456667788888888876


Q ss_pred             C-CHHHHHHHHhccCC
Q 043390          135 G-KIEIFNFLAGKNFR  149 (150)
Q Consensus       135 g-~~~~~~~L~~~~~~  149 (150)
                      + +.+++++|+++|+.
T Consensus       265 ~~~~~iv~~Ll~~gad  280 (434)
T PHA02874        265 PCDIDIIDILLYHKAD  280 (434)
T ss_pred             CCcHHHHHHHHHCcCC
Confidence            5 77888888888875

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.7e-23  Score=149.48  Aligned_cols=135  Identities=18%  Similarity=0.146  Sum_probs=114.3

Q ss_pred             cccccchhhhh-cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCccccc
Q 043390            4 IGIEETDAKNK-INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKM   82 (150)
Q Consensus         4 ~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~   82 (150)
                      .|++....+.. ..++||.|+. .|+.+.++.|+..+++  ++..|..|+||||.|+..++.+++++|++.|++     +
T Consensus       156 ~gadin~~~~~~g~tpLh~A~~-~~~~~iv~~Ll~~gad--~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-----i  227 (477)
T PHA02878        156 YGADINMKDRHKGNTALHYATE-NKDQRLTELLLSYGAN--VNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS-----T  227 (477)
T ss_pred             cCCCCCccCCCCCCCHHHHHHh-CCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-----C
Confidence            44444444444 6778999999 9999999999988655  677899999999999999999999999999998     6


Q ss_pred             ccCCCCCChHHHHHHHc-CCcHHHHHHHHhhCCcccccccC-CCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           83 TRQNKAGNTILHETASS-SHALPVADKLFRKAPGLLGMRNN-NGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        83 ~~~~~~g~t~l~~a~~~-g~~~~~~~~Ll~~~~~~~~~~~~-~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      +.+|..|.||||+|+.. ++. +++++|++.|+. ++.++. .|.||||+|  .++.+++++|+++|+.+
T Consensus       228 n~~d~~g~TpLh~A~~~~~~~-~iv~~Ll~~gad-vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadi  293 (477)
T PHA02878        228 DARDKCGNTPLHISVGYCKDY-DILKLLLEHGVD-VNAKSYILGLTALHSS--IKSERKLKLLLEYGADI  293 (477)
T ss_pred             CCCCCCCCCHHHHHHHhcCCH-HHHHHHHHcCCC-CCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCC
Confidence            88999999999999976 565 999999999965 888876 799999999  56789999999999863

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=5.1e-23  Score=156.56  Aligned_cols=127  Identities=22%  Similarity=0.267  Sum_probs=108.6

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      ....++.||. .|+.+.++.++..+.+  ++..|..|+||||+|+..|+.++++.|+++|++     ++.+|.+|+||||
T Consensus       525 ~~~~L~~Aa~-~g~~~~l~~Ll~~G~d--~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-----in~~d~~G~TpL~  596 (823)
T PLN03192        525 MASNLLTVAS-TGNAALLEELLKAKLD--PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-----VHIRDANGNTALW  596 (823)
T ss_pred             chhHHHHHHH-cCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-----CCCcCCCCCCHHH
Confidence            4567999999 9999999999988655  778899999999999999999999999999988     6888999999988


Q ss_pred             HHHHcCCc------------------------------HHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHH
Q 043390           95 ETASSSHA------------------------------LPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLA  144 (150)
Q Consensus        95 ~a~~~g~~------------------------------~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~  144 (150)
                      +|+..|+.                              .+++++|++.|++ ++.+|.+|.||||+|+..|+.+++++|+
T Consensus       597 ~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~Ll  675 (823)
T PLN03192        597 NAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLLI  675 (823)
T ss_pred             HHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHHH
Confidence            66555543                              1556666777754 8999999999999999999999999999


Q ss_pred             hccCCC
Q 043390          145 GKNFRL  150 (150)
Q Consensus       145 ~~~~~l  150 (150)
                      ++|+++
T Consensus       676 ~~GAdv  681 (823)
T PLN03192        676 MNGADV  681 (823)
T ss_pred             HcCCCC
Confidence            999863

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-23  Score=145.66  Aligned_cols=125  Identities=22%  Similarity=0.286  Sum_probs=113.3

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHE   95 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~   95 (150)
                      -++++-|+. .|+++.|+-|+..+..  +|.......|||-.||..|+.+++++|+++|++     .+..|+.|.|+||+
T Consensus        85 appLWaAsa-AGHl~vVk~L~~~ga~--VN~tT~TNStPLraACfDG~leivKyLvE~gad-----~~IanrhGhTcLmI  156 (615)
T KOG0508|consen   85 APPLWAASA-AGHLEVVKLLLRRGAS--VNDTTRTNSTPLRAACFDGHLEIVKYLVEHGAD-----PEIANRHGHTCLMI  156 (615)
T ss_pred             CchhhHHhc-cCcHHHHHHHHHhcCc--cccccccCCccHHHHHhcchhHHHHHHHHcCCC-----CcccccCCCeeEEe
Confidence            345777777 9999999999998644  666666667999999999999999999999999     58899999999999


Q ss_pred             HHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           96 TASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        96 a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |+..|+. +++++|++.|++ ++.++..|.|+||.+++.|+.+++++|+++|+++
T Consensus       157 a~ykGh~-~I~qyLle~gAD-vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i  209 (615)
T KOG0508|consen  157 ACYKGHV-DIAQYLLEQGAD-VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI  209 (615)
T ss_pred             eeccCch-HHHHHHHHhCCC-cchhcccCchHHHhhhhcccHHHHHHHHhCCcee
Confidence            9999997 999999999965 9999999999999999999999999999999864

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.3e-22  Score=146.60  Aligned_cols=123  Identities=15%  Similarity=0.160  Sum_probs=75.6

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHH-------------------------
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLL-------------------------   71 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll-------------------------   71 (150)
                      .+||.|+. .|+.+.++.|+..+.+  ++.+|..|+||||+||..|+.++++.|+                         
T Consensus        39 tPLh~A~~-~g~~e~vk~Ll~~gad--vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~e  115 (477)
T PHA02878         39 IPLHQAVE-ARNLDVVKSLLTRGHN--VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVE  115 (477)
T ss_pred             chHHHHHH-cCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHH
Confidence            34677777 7777777777666433  5566666777777776655443333332                         


Q ss_pred             ---------------------------------------hhCCCCcccccccCCCC-CChHHHHHHHcCCcHHHHHHHHh
Q 043390           72 ---------------------------------------DELPDQSLDKMTRQNKA-GNTILHETASSSHALPVADKLFR  111 (150)
Q Consensus        72 ---------------------------------------~~~~~~~~~~~~~~~~~-g~t~l~~a~~~g~~~~~~~~Ll~  111 (150)
                                                             +.|++     ++.++.. |.||||+|+..|+. +++++|++
T Consensus       116 i~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gad-----in~~~~~~g~tpLh~A~~~~~~-~iv~~Ll~  189 (477)
T PHA02878        116 IFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD-----INMKDRHKGNTALHYATENKDQ-RLTELLLS  189 (477)
T ss_pred             HHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCC-----CCccCCCCCCCHHHHHHhCCCH-HHHHHHHH
Confidence                                                   22322     3445555 66777777766664 66666666


Q ss_pred             hCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390          112 KAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       112 ~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      .|+. ++.+|..|.||||.|++.|+.+++++|++.|+.
T Consensus       190 ~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~  226 (477)
T PHA02878        190 YGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS  226 (477)
T ss_pred             CCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            6644 666666666666666666666666666666654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.90  E-value=9.5e-23  Score=147.43  Aligned_cols=134  Identities=23%  Similarity=0.170  Sum_probs=86.2

Q ss_pred             hhhhcCHHHHHHHHhhc--CHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcc---------
Q 043390           11 AKNKINSELYNALMIKQ--DEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSL---------   79 (150)
Q Consensus        11 ~~~~~~~~l~~a~~~~~--~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~---------   79 (150)
                      .+....+++|.|+. .|  +.+.++.|++.+.+  ++..+..|.||||+|+..|+.+++++|++.|++++.         
T Consensus       137 ~~~~g~t~L~~A~~-~~~~~~~iv~~Ll~~g~d--in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~  213 (480)
T PHA03100        137 KNSDGENLLHLYLE-SNKIDLKILKLLIDKGVD--INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFT  213 (480)
T ss_pred             cCCCCCcHHHHHHH-cCCChHHHHHHHHHCCCC--cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHH
Confidence            33344445555555 55  55555555555433  444555555666666655555555555555554210         


Q ss_pred             ---------------------------cccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHH
Q 043390           80 ---------------------------DKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAA  132 (150)
Q Consensus        80 ---------------------------~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~  132 (150)
                                                 .+++.+|..|.||||+|+..|+. +++++|++.|+ +++.+|..|.||+++|+
T Consensus       214 ~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~-~iv~~Ll~~ga-d~n~~d~~g~tpl~~A~  291 (480)
T PHA03100        214 IFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP-EFVKYLLDLGA-NPNLVNKYGDTPLHIAI  291 (480)
T ss_pred             HHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcCC-CCCccCCCCCcHHHHHH
Confidence                                       01466777788888888888875 88888888776 47778888888888888


Q ss_pred             HcCCHHHHHHHHhccCC
Q 043390          133 HNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       133 ~~g~~~~~~~L~~~~~~  149 (150)
                      ..++.+++++|+++|+.
T Consensus       292 ~~~~~~iv~~Ll~~g~~  308 (480)
T PHA03100        292 LNNNKEIFKLLLNNGPS  308 (480)
T ss_pred             HhCCHHHHHHHHhcCCC
Confidence            88888888888877764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.90  E-value=4.5e-22  Score=129.58  Aligned_cols=125  Identities=16%  Similarity=0.221  Sum_probs=79.2

Q ss_pred             cCHHHHHHHHhhc--CHHHHHHHHHhCCCCCccccc-cCCCcHHHHHHhh---CChHHHHHHHhhCCCCcccccccCCCC
Q 043390           15 INSELYNALMIKQ--DEQKVIELCRKVPDHSLCVFT-IYDDTVLHVAAYT---KKSDLVMKLLDELPDQSLDKMTRQNKA   88 (150)
Q Consensus        15 ~~~~l~~a~~~~~--~~~~~~~ll~~~~~~~~~~~~-~~g~~~L~~a~~~---~~~~~v~~ll~~~~~~~~~~~~~~~~~   88 (150)
                      ..++||.|+. .+  +.+.++.|++.+++  ++..+ ..|+||||+|+..   ++.+++++|+++|++     ++.+|..
T Consensus        51 g~TpLh~a~~-~~~~~~eiv~~Ll~~gad--vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad-----in~~d~~  122 (209)
T PHA02859         51 YETPIFSCLE-KDKVNVEILKFLIENGAD--VNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS-----ITEEDED  122 (209)
T ss_pred             CCCHHHHHHH-cCCCCHHHHHHHHHCCCC--CCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC-----CCCcCCC
Confidence            3445666665 43  56666666666444  44444 3667777776543   346777777777766     5667777


Q ss_pred             CChHHHHHHHc--CCcHHHHHHHHhhCCcccccccCCCCCHHHH-HHHcCCHHHHHHHHhccCC
Q 043390           89 GNTILHETASS--SHALPVADKLFRKAPGLLGMRNNNGGTALLG-AAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        89 g~t~l~~a~~~--g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~-a~~~g~~~~~~~L~~~~~~  149 (150)
                      |.||||+|+..  ++. +++++|++.|+. ++.+|..|.||||. |+..++.+++++|+++|+.
T Consensus       123 G~TpLh~a~~~~~~~~-~iv~~Li~~gad-in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad  184 (209)
T PHA02859        123 GKNLLHMYMCNFNVRI-NVIKLLIDSGVS-FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGID  184 (209)
T ss_pred             CCCHHHHHHHhccCCH-HHHHHHHHcCCC-cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC
Confidence            77777776542  454 677777777644 66777777777774 4456677777777777664

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.1e-22  Score=147.03  Aligned_cols=135  Identities=20%  Similarity=0.197  Sum_probs=103.5

Q ss_pred             ccccchhhhhcCHHHHH-----HHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHH--hhCChHHHHHHHhhCCCC
Q 043390            5 GIEETDAKNKINSELYN-----ALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAA--YTKKSDLVMKLLDELPDQ   77 (150)
Q Consensus         5 ~~~~~~~~~~~~~~l~~-----a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~--~~~~~~~v~~ll~~~~~~   77 (150)
                      |++..........+++.     |+. .++.+.++.|++.+++  ++..+..|.||||+|+  ..++.+++++|++.|++ 
T Consensus        58 g~~~~~~~~~~~t~L~~~~~~~a~~-~~~~~iv~~Ll~~ga~--i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~-  133 (480)
T PHA03100         58 GADINSSTKNNSTPLHYLSNIKYNL-TDVKEIVKLLLEYGAN--VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN-  133 (480)
T ss_pred             CCCCCCccccCcCHHHHHHHHHHHh-hchHHHHHHHHHCCCC--CCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCC-
Confidence            44333333444456777     777 7888877777777555  4677788888888888  88888888888888877 


Q ss_pred             cccccccCCCCCChHHHHHHHcC--CcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           78 SLDKMTRQNKAGNTILHETASSS--HALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        78 ~~~~~~~~~~~g~t~l~~a~~~g--~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                          ++..+..|.||||+|+..|  +. +++++|++.|+. ++.++..|.||||+|+..|+.+++++|+++|+.
T Consensus       134 ----~~~~~~~g~t~L~~A~~~~~~~~-~iv~~Ll~~g~d-in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~  201 (480)
T PHA03100        134 ----VNIKNSDGENLLHLYLESNKIDL-KILKLLIDKGVD-INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD  201 (480)
T ss_pred             ----CCccCCCCCcHHHHHHHcCCChH-HHHHHHHHCCCC-cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence                5778888888888888888  75 888888888865 788888888888888888888888888888865

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.89  E-value=8.6e-23  Score=124.73  Aligned_cols=119  Identities=24%  Similarity=0.210  Sum_probs=105.9

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHH
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHET   96 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a   96 (150)
                      +.+.+|+. .+....|+.+|...+.. ++.+|.+|+||||-|+++|+.++++.|+..|++     .+.+...|+||||.|
T Consensus        65 rl~lwaae-~nrl~eV~~lL~e~an~-vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-----~~a~T~~GWTPLhSA  137 (228)
T KOG0512|consen   65 RLLLWAAE-KNRLTEVQRLLSEKANH-VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-----KEAKTNEGWTPLHSA  137 (228)
T ss_pred             HHHHHHHh-hccHHHHHHHHHhcccc-ccccccccccHHHHHHhcCchHHHHHHHHccCC-----cccccccCccchhhh
Confidence            34677888 99999999999987776 789999999999999999999999999999999     588999999999999


Q ss_pred             HHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCH-HHHHHHH
Q 043390           97 ASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKI-EIFNFLA  144 (150)
Q Consensus        97 ~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~-~~~~~L~  144 (150)
                      +...+. +++.+|+..|++ +++......||||+|+...+. ..+.+|+
T Consensus       138 ckWnN~-~va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll  184 (228)
T KOG0512|consen  138 CKWNNF-EVAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLL  184 (228)
T ss_pred             hcccch-hHHHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHh
Confidence            999997 999999999965 999999999999999986554 4555554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.89  E-value=6.1e-22  Score=128.96  Aligned_cols=124  Identities=13%  Similarity=0.151  Sum_probs=106.4

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhC--ChHHHHHHHhhCCCCcccccccCC-CCCC
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTK--KSDLVMKLLDELPDQSLDKMTRQN-KAGN   90 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~--~~~~v~~ll~~~~~~~~~~~~~~~-~~g~   90 (150)
                      ...++|+.|+. .|+.+.++.++..     .+..+..|.||||+|+..+  +.+++++|++.|++     ++.++ ..|.
T Consensus        20 ~~~~pL~~A~~-~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad-----vn~~~~~~g~   88 (209)
T PHA02859         20 RYCNPLFYYVE-KDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD-----VNFKTRDNNL   88 (209)
T ss_pred             ccCcHHHHHHH-hCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC-----CCccCCCCCC
Confidence            34567999999 9999999999875     3456889999999999865  79999999999998     67776 5899


Q ss_pred             hHHHHHHHc---CCcHHHHHHHHhhCCcccccccCCCCCHHHHHHH--cCCHHHHHHHHhccCCC
Q 043390           91 TILHETASS---SHALPVADKLFRKAPGLLGMRNNNGGTALLGAAH--NGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        91 t~l~~a~~~---g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~--~g~~~~~~~L~~~~~~l  150 (150)
                      ||||+|+..   ++. +++++|++.|+. ++.+|..|.||||+|+.  .++.+++++|++.|+.+
T Consensus        89 TpLh~a~~~~~~~~~-eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi  151 (209)
T PHA02859         89 SALHHYLSFNKNVEP-EILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF  151 (209)
T ss_pred             CHHHHHHHhCccccH-HHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc
Confidence            999998764   354 999999999865 99999999999999886  46899999999999763

>PHA02795 ankyrin-like protein; Provisional

Probab=99.89  E-value=3.5e-22  Score=140.23  Aligned_cols=139  Identities=14%  Similarity=0.118  Sum_probs=114.4

Q ss_pred             CCCcccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCcccc-----ccCCCcHHHHHHhhCChHHHHHHHhhCC
Q 043390            1 MSSIGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVF-----TIYDDTVLHVAAYTKKSDLVMKLLDELP   75 (150)
Q Consensus         1 ~~s~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~-----~~~g~~~L~~a~~~~~~~~v~~ll~~~~   75 (150)
                      |++.|++....+.  .+++|.|+. .++.+.++.++..+... .+..     +..+.+++|.|...++.+++++|+.+|+
T Consensus       137 LI~~GADIn~~~~--~t~lh~A~~-~~~~eIVk~Lls~Ga~~-~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GA  212 (437)
T PHA02795        137 MVDHGAVIYKIEC--LNAYFRGIC-KKESSVVEFILNCGIPD-ENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIE  212 (437)
T ss_pred             HHHCCCCCCCCCC--CCHHHHHHH-cCcHHHHHHHHhcCCcc-cccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcC
Confidence            3456666543222  457899998 89999988888886532 1111     2347789999999999999999999999


Q ss_pred             CCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcC--------CHHHHHHHHhcc
Q 043390           76 DQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNG--------KIEIFNFLAGKN  147 (150)
Q Consensus        76 ~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g--------~~~~~~~L~~~~  147 (150)
                      +     ++.+|..|.||||+|+..|+. +++++|++.|+. ++.++..|.||||+|+..|        +.+++++|+++|
T Consensus       213 D-----IN~kD~~G~TpLh~Aa~~g~~-eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g  285 (437)
T PHA02795        213 D-----INQLDAGGRTLLYRAIYAGYI-DLVSWLLENGAN-VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREP  285 (437)
T ss_pred             C-----cCcCCCCCCCHHHHHHHcCCH-HHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCC
Confidence            8     789999999999999999996 999999999965 9999999999999999998        469999999998


Q ss_pred             CCC
Q 043390          148 FRL  150 (150)
Q Consensus       148 ~~l  150 (150)
                      +.+
T Consensus       286 adI  288 (437)
T PHA02795        286 LSI  288 (437)
T ss_pred             CCC
Confidence            753

>PHA02798 ankyrin-like protein; Provisional

Probab=99.89  E-value=4.6e-22  Score=144.16  Aligned_cols=66  Identities=20%  Similarity=0.228  Sum_probs=56.7

Q ss_pred             cccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           82 MTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        82 ~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ++.+|..|+||||+|+..|+. +++++|++.|++ ++.+|..|.|||+.|++.++.++++.|+++++.
T Consensus       251 vN~~d~~G~TPL~~A~~~~~~-~~v~~LL~~GAd-in~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~  316 (489)
T PHA02798        251 INQVDELGFNPLYYSVSHNNR-KIFEYLLQLGGD-INIITELGNTCLFTAFENESKFIFNSILNKKPN  316 (489)
T ss_pred             CCCcCcCCccHHHHHHHcCcH-HHHHHHHHcCCc-ccccCCCCCcHHHHHHHcCcHHHHHHHHccCCC
Confidence            345677899999999999986 999999998865 899999999999999999999999999888764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.89  E-value=4.4e-22  Score=143.66  Aligned_cols=133  Identities=22%  Similarity=0.195  Sum_probs=107.3

Q ss_pred             ccchhhhhcCHHHHHHHHhh--cCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCCh--HHHHHHHhhCCCCccccc
Q 043390            7 EETDAKNKINSELYNALMIK--QDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKS--DLVMKLLDELPDQSLDKM   82 (150)
Q Consensus         7 ~~~~~~~~~~~~l~~a~~~~--~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~--~~v~~ll~~~~~~~~~~~   82 (150)
                      +....+....+.+|.++. .  ++.+.++.++..+.+  ++.+|..|+||||+|+..++.  .+++.++..|.+     +
T Consensus       179 ~~~~~d~~g~t~Lh~~~~-~~~~~~~i~~~Ll~~g~~--~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~d-----i  250 (471)
T PHA03095        179 DVYAVDDRFRSLLHHHLQ-SFKPRARIVRELIRAGCD--PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGIS-----I  250 (471)
T ss_pred             CCcccCCCCCCHHHHHHH-HCCCcHHHHHHHHHcCCC--CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCC-----C
Confidence            333334445566777665 3  556677777777544  677888889999999888874  577888888887     6


Q ss_pred             ccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           83 TRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        83 ~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      +.+|..|+||||+|+..|+. +++++|++.|++ ++.++..|.|||++|+..|+.++++.|+++++.
T Consensus       251 n~~d~~g~TpLh~A~~~~~~-~~v~~LL~~gad-~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~  315 (471)
T PHA03095        251 NARNRYGQTPLHYAAVFNNP-RACRRLIALGAD-INAVSSDGNTPLSLMVRNNNGRAVRAALAKNPS  315 (471)
T ss_pred             CCcCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence            88999999999999999996 999999999865 999999999999999999999999999988764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.88  E-value=6.5e-22  Score=142.79  Aligned_cols=137  Identities=20%  Similarity=0.149  Sum_probs=102.2

Q ss_pred             CcccccchhhhhcCHHHHHHHHhhc---CHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhC-ChHHHHHHHhhCCCCc
Q 043390            3 SIGIEETDAKNKINSELYNALMIKQ---DEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTK-KSDLVMKLLDELPDQS   78 (150)
Q Consensus         3 s~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~-~~~~v~~ll~~~~~~~   78 (150)
                      +.|++....+....++||.|+. .+   +.+.++.|++.+.+  ++.++..|+||||+|+..+ +.+++++|++.|++  
T Consensus        35 ~~ga~vn~~~~~g~t~Lh~a~~-~~~~~~~~iv~~Ll~~Gad--in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~--  109 (471)
T PHA03095         35 AAGADVNFRGEYGKTPLHLYLH-YSSEKVKDIVRLLLEAGAD--VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGAD--  109 (471)
T ss_pred             HcCCCcccCCCCCCCHHHHHHH-hcCCChHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCC--
Confidence            3455554445555667888887 77   77777777777544  6677778888888888888 47888888888887  


Q ss_pred             ccccccCCCCCChHHHHHH--HcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcC--CHHHHHHHHhccCC
Q 043390           79 LDKMTRQNKAGNTILHETA--SSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNG--KIEIFNFLAGKNFR  149 (150)
Q Consensus        79 ~~~~~~~~~~g~t~l~~a~--~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g--~~~~~~~L~~~~~~  149 (150)
                         ++.++..|.||||+|+  ..++. +++++|++.|++ ++.+|..|.||||+|+..+  +.+++++|+++|+.
T Consensus       110 ---in~~~~~g~tpLh~a~~~~~~~~-~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~  179 (471)
T PHA03095        110 ---VNAKDKVGRTPLHVYLSGFNINP-KVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGAD  179 (471)
T ss_pred             ---CCCCCCCCCCHHHHHhhCCcCCH-HHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC
Confidence               5778888888888888  34454 788888888755 7888888888888877755  57788888887764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=2.4e-22  Score=146.41  Aligned_cols=134  Identities=24%  Similarity=0.212  Sum_probs=118.9

Q ss_pred             chhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHh-hCCCCcccccccCCC
Q 043390            9 TDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLD-ELPDQSLDKMTRQNK   87 (150)
Q Consensus         9 ~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~-~~~~~~~~~~~~~~~   87 (150)
                      ++.+....+++|.|++ .|+.+.+.-|+..+.+  ++.++.++.||||.|+++|+..+|+.|++ .+..    ..+..|.
T Consensus       267 ~~~d~dg~tpLH~a~r-~G~~~svd~Ll~~Ga~--I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~r----llne~D~  339 (929)
T KOG0510|consen  267 NDEDNDGCTPLHYAAR-QGGPESVDNLLGFGAS--INSKNKDEESPLHFAAIYGRINTVERLLQESDTR----LLNESDL  339 (929)
T ss_pred             hcccccCCchHHHHHH-cCChhHHHHHHHcCCc--ccccCCCCCCchHHHHHcccHHHHHHHHhCcCcc----ccccccc
Confidence            4455666778999999 9999999999998666  77889999999999999999999999999 4444    4788999


Q ss_pred             CCChHHHHHHHcCCcHHHHHHHHhhCCcccc--cccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           88 AGNTILHETASSSHALPVADKLFRKAPGLLG--MRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        88 ~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~--~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      .|.||||.|+..|+- .+++.|+..|+...+  ..|.+|.||||.|+..|+..++++|+.+|+.+
T Consensus       340 ~g~tpLHlaa~~gH~-~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  340 HGMTPLHLAAKSGHD-RVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             cCCCchhhhhhcCHH-HHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            999999999999995 999999999986454  45999999999999999999999999999864

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.88  E-value=6e-22  Score=147.22  Aligned_cols=137  Identities=14%  Similarity=0.143  Sum_probs=93.9

Q ss_pred             CcccccchhhhhcCHHHHHHHHhhcC--HHHHHHHHHhCCCCCccccccCCCcHHHHHH---------------------
Q 043390            3 SIGIEETDAKNKINSELYNALMIKQD--EQKVIELCRKVPDHSLCVFTIYDDTVLHVAA---------------------   59 (150)
Q Consensus         3 s~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~---------------------   59 (150)
                      +.|++....+....++||.|+. .|+  .+.++.|++.+++  ++.+|..|+||||+|+                     
T Consensus       200 e~GADVN~kD~~G~TPLH~Aa~-~g~~~~eIVklLLe~GAD--VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n  276 (764)
T PHA02716        200 NNGVNVNLQNNHLITPLHTYLI-TGNVCASVIKKIIELGGD--MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGN  276 (764)
T ss_pred             HcCCCCCCCCCCCCCHHHHHHH-cCCCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccc
Confidence            3455555555556667777777 764  3666777776544  5667777777777542                     


Q ss_pred             ----------------hhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHH--cCCcHHHHHHHHhhCCccccccc
Q 043390           60 ----------------YTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETAS--SSHALPVADKLFRKAPGLLGMRN  121 (150)
Q Consensus        60 ----------------~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~--~g~~~~~~~~Ll~~~~~~~~~~~  121 (150)
                                      ..|+.+++++|++.|++     ++.+|..|+||||+|+.  .++. +++++|++.|+. ++.+|
T Consensus       277 ~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd-----IN~kD~~G~TPLH~Aaa~~~~~~-eIVklLLe~GAD-IN~kD  349 (764)
T PHA02716        277 KVKNIPMILHSYITLARNIDISVVYSFLQPGVK-----LHYKDSAGRTCLHQYILRHNIST-DIIKLLHEYGND-LNEPD  349 (764)
T ss_pred             ccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc-----eeccCCCCCCHHHHHHHHhCCCc-hHHHHHHHcCCC-CccCC
Confidence                            33556677777777776     56777888888887654  3454 788888887754 77888


Q ss_pred             CCCCCHHHHHHH--------------cCCHHHHHHHHhccCC
Q 043390          122 NNGGTALLGAAH--------------NGKIEIFNFLAGKNFR  149 (150)
Q Consensus       122 ~~g~tpl~~a~~--------------~g~~~~~~~L~~~~~~  149 (150)
                      ..|+||||+|+.              .++.+++++|+++|+.
T Consensus       350 ~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD  391 (764)
T PHA02716        350 NIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD  391 (764)
T ss_pred             CCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC
Confidence            888888887764              2577888888888775

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.1e-21  Score=142.36  Aligned_cols=140  Identities=16%  Similarity=0.136  Sum_probs=99.8

Q ss_pred             ccccc-chhhhhcCHHHHHHHHhh--cCHHHHHHHHHhCCCCCccc-cccCCCcHHHHHHhhC----ChHHHHHHHhhCC
Q 043390            4 IGIEE-TDAKNKINSELYNALMIK--QDEQKVIELCRKVPDHSLCV-FTIYDDTVLHVAAYTK----KSDLVMKLLDELP   75 (150)
Q Consensus         4 ~~~~~-~~~~~~~~~~l~~a~~~~--~~~~~~~~ll~~~~~~~~~~-~~~~g~~~L~~a~~~~----~~~~v~~ll~~~~   75 (150)
                      .|++. ...+....++||.++. .  ++.+.++.|++.+.+  ++. .+..|.||||.|+..+    +.+++++|++.|+
T Consensus       133 ~Gadin~~~d~~g~tpLh~a~~-~~~~~~~iv~~Ll~~Gad--i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga  209 (494)
T PHA02989        133 KGINVNDVKNSRGYNLLHMYLE-SFSVKKDVIKILLSFGVN--LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGV  209 (494)
T ss_pred             CCCCcccccCCCCCCHHHHHHH-hccCCHHHHHHHHHcCCC--ccccccccCCChHHHHHhcccccccHHHHHHHHhCCC
Confidence            34444 2333444556666654 3  456666666666544  333 4566777777766543    6677777777776


Q ss_pred             CCccc---------------------------------ccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccC
Q 043390           76 DQSLD---------------------------------KMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNN  122 (150)
Q Consensus        76 ~~~~~---------------------------------~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~  122 (150)
                      +.+..                                 +++.+|..|+||||+|+..|+. +++++|++.|++ ++.+|.
T Consensus       210 ~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~-~~v~~LL~~Gad-in~~d~  287 (494)
T PHA02989        210 NIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNY-EAFNYLLKLGDD-IYNVSK  287 (494)
T ss_pred             CccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCH-HHHHHHHHcCCC-ccccCC
Confidence            54311                                 2356778899999999999996 999999999865 999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390          123 NGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus       123 ~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      .|.||||+|++.|+.++++.|+++++
T Consensus       288 ~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        288 DGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            99999999999999999999998765

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.1e-21  Score=147.07  Aligned_cols=131  Identities=19%  Similarity=0.200  Sum_probs=101.4

Q ss_pred             hhhhcCHHHHHHHHhhc-CHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCC
Q 043390           11 AKNKINSELYNALMIKQ-DEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAG   89 (150)
Q Consensus        11 ~~~~~~~~l~~a~~~~~-~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g   89 (150)
                      .+....++||.|+. .+ +.+.+..++..+.  +++.+|..|+||||+|+..++.+++++|+++|++     ++..+..|
T Consensus       337 ~d~~g~TpLh~A~~-~~~~~~iv~lLl~~ga--din~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-----~~~~~~~g  408 (682)
T PHA02876        337 ADRLYITPLHQAST-LDRNKDIVITLLELGA--NVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD-----IEALSQKI  408 (682)
T ss_pred             cccCCCcHHHHHHH-hCCcHHHHHHHHHcCC--CCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----ccccCCCC
Confidence            33444556777776 43 4445555555543  3677888889999999999999999999998888     57788888


Q ss_pred             ChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcC-CHHHHHHHHhccCCC
Q 043390           90 NTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNG-KIEIFNFLAGKNFRL  150 (150)
Q Consensus        90 ~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g-~~~~~~~L~~~~~~l  150 (150)
                      .||||+|+..++...++++|++.|+. ++.+|..|+||||+|+..+ +.+++++|++.|+.+
T Consensus       409 ~T~Lh~A~~~~~~~~~vk~Ll~~gad-in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~  469 (682)
T PHA02876        409 GTALHFALCGTNPYMSVKTLIDRGAN-VNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV  469 (682)
T ss_pred             CchHHHHHHcCCHHHHHHHHHhCCCC-CCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCC
Confidence            89999888777644678888888865 8999999999999999876 689999999999763

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=2.6e-21  Score=130.96  Aligned_cols=118  Identities=14%  Similarity=0.008  Sum_probs=101.0

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCcccc----ccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccC-CCCCC
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVF----TIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQ-NKAGN   90 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~----~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~-~~~g~   90 (150)
                      .+.++.|+. .|+.+.++.|++.+++  ++.+    +..|.||||+|+..++.+++++|+.+|++     ++.+ +..|.
T Consensus        34 ~~lL~~A~~-~~~~eivk~LL~~GAd--iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-----VN~~~~~~g~  105 (300)
T PHA02884         34 ANILYSSIK-FHYTDIIDAILKLGAD--PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-----VNRYAEEAKI  105 (300)
T ss_pred             CHHHHHHHH-cCCHHHHHHHHHCCCC--ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----cCcccCCCCC
Confidence            445788888 8999999999999776  4444    46899999999999999999999999999     5775 46899


Q ss_pred             hHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHH
Q 043390           91 TILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL  143 (150)
Q Consensus        91 t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L  143 (150)
                      ||||+|+..++. +++++|++.|++ ++.+|..|.||||+|++.++.+++..+
T Consensus       106 TpLh~Aa~~~~~-eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~  156 (300)
T PHA02884        106 TPLYISVLHGCL-KCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMI  156 (300)
T ss_pred             CHHHHHHHcCCH-HHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHh
Confidence            999999999996 999999999965 999999999999999987655544443

>PHA02946 ankyin-like protein; Provisional

Probab=99.87  E-value=2.4e-21  Score=138.67  Aligned_cols=138  Identities=15%  Similarity=0.092  Sum_probs=86.3

Q ss_pred             CcccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCC--hHHHHHHHhhCCCCcc-
Q 043390            3 SIGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKK--SDLVMKLLDELPDQSL-   79 (150)
Q Consensus         3 s~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~--~~~v~~ll~~~~~~~~-   79 (150)
                      +.|.+....+....++||.|+. .|+.+.++.|+..+++  ++.+|..|+||||+|+..++  .+++++|+.+|++.+. 
T Consensus        60 ~~Gadvn~~d~~G~TpLh~Aa~-~g~~eiv~lLL~~GAd--in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~  136 (446)
T PHA02946         60 HRGYSPNETDDDGNYPLHIASK-INNNRIVAMLLTHGAD--PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNS  136 (446)
T ss_pred             HCcCCCCccCCCCCCHHHHHHH-cCCHHHHHHHHHCcCC--CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccc
Confidence            4455555555666777888888 8888888888887544  66778888888888877653  6778888888876421 


Q ss_pred             ---------------------------cccccCCCCCChHHHHHHHcCCc-HHHHHHHHhhCCcccccccCCCCCHHHHH
Q 043390           80 ---------------------------DKMTRQNKAGNTILHETASSSHA-LPVADKLFRKAPGLLGMRNNNGGTALLGA  131 (150)
Q Consensus        80 ---------------------------~~~~~~~~~g~t~l~~a~~~g~~-~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a  131 (150)
                                                 .+++.+|..|+||||+|+..++. .+++++|++.|++ ++.+|.+|.||||+|
T Consensus       137 ~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad-in~~d~~G~TpLH~A  215 (446)
T PHA02946        137 VDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS-PSKPDHDGNTPLHIV  215 (446)
T ss_pred             cCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHH
Confidence                                       01233444555555555443321 1455555555543 555666666666666


Q ss_pred             HHcC--CHHHHHHHH
Q 043390          132 AHNG--KIEIFNFLA  144 (150)
Q Consensus       132 ~~~g--~~~~~~~L~  144 (150)
                      +..+  +.+++++|+
T Consensus       216 a~~~~~~~~iv~lLl  230 (446)
T PHA02946        216 CSKTVKNVDIINLLL  230 (446)
T ss_pred             HHcCCCcHHHHHHHH
Confidence            6554  555666555

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.87  E-value=2.9e-21  Score=143.63  Aligned_cols=130  Identities=18%  Similarity=0.105  Sum_probs=107.6

Q ss_pred             hhhcCHHHHHHHH-hhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCC--hHHHHHHHhhCCCCcccccccCCCC
Q 043390           12 KNKINSELYNALM-IKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKK--SDLVMKLLDELPDQSLDKMTRQNKA   88 (150)
Q Consensus        12 ~~~~~~~l~~a~~-~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~--~~~v~~ll~~~~~~~~~~~~~~~~~   88 (150)
                      +....++||.|+. ..++.+.++.|++.+.+  ++..|..|.||||+|+..|+  .+++++|++.|++     ++.+|..
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD--VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD-----VN~kD~~  246 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVN--VNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD-----MDMKCVN  246 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-----CCCCCCC
Confidence            4456667887654 13577889889988655  77889999999999999996  4899999999999     6889999


Q ss_pred             CChHHHHHH-------------------------------------HcCCcHHHHHHHHhhCCcccccccCCCCCHHHHH
Q 043390           89 GNTILHETA-------------------------------------SSSHALPVADKLFRKAPGLLGMRNNNGGTALLGA  131 (150)
Q Consensus        89 g~t~l~~a~-------------------------------------~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a  131 (150)
                      |+||||+|+                                     ..|+. +++++|++.|+. ++.+|..|+||||+|
T Consensus       247 G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~l-eiVklLLe~GAd-IN~kD~~G~TPLH~A  324 (764)
T PHA02716        247 GMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDI-SVVYSFLQPGVK-LHYKDSAGRTCLHQY  324 (764)
T ss_pred             CCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCH-HHHHHHHhCCCc-eeccCCCCCCHHHHH
Confidence            999999753                                     34665 889999999865 999999999999997


Q ss_pred             HH--cCCHHHHHHHHhccCCC
Q 043390          132 AH--NGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       132 ~~--~g~~~~~~~L~~~~~~l  150 (150)
                      +.  .++.+++++|+++|+.+
T Consensus       325 aa~~~~~~eIVklLLe~GADI  345 (764)
T PHA02716        325 ILRHNISTDIIKLLHEYGNDL  345 (764)
T ss_pred             HHHhCCCchHHHHHHHcCCCC
Confidence            64  46889999999999863

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=1.5e-21  Score=142.34  Aligned_cols=130  Identities=22%  Similarity=0.120  Sum_probs=111.4

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCcc-------------ccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcc
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLC-------------VFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSL   79 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~-------------~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~   79 (150)
                      ....++||.|+. .|+.+.++.+|+.+......             ..|.+|.||||+|++.|+.++++.|+..|++   
T Consensus       223 n~~~~pLhlAve-~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~---  298 (929)
T KOG0510|consen  223 NEKATPLHLAVE-GGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS---  298 (929)
T ss_pred             CCCCcchhhhhh-cCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc---
Confidence            445567999999 99999999998875543222             2478899999999999999999999999998   


Q ss_pred             cccccCCCCCChHHHHHHHcCCcHHHHHHHHh-hCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           80 DKMTRQNKAGNTILHETASSSHALPVADKLFR-KAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        80 ~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~-~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                        ++.++.++.||||.|+..|++ .+++-|++ .+....+..|-.|.||||+|++.||..++++|+.+|+-
T Consensus       299 --I~~kn~d~~spLH~AA~yg~~-ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~  366 (929)
T KOG0510|consen  299 --INSKNKDEESPLHFAAIYGRI-NTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGAL  366 (929)
T ss_pred             --ccccCCCCCCchHHHHHcccH-HHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChh
Confidence              788999999999999999997 99999998 55566778888999999999999999999999999873

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.86  E-value=6.1e-21  Score=108.43  Aligned_cols=85  Identities=31%  Similarity=0.453  Sum_probs=65.8

Q ss_pred             HHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHc
Q 043390           55 LHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHN  134 (150)
Q Consensus        55 L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~  134 (150)
                      ||+|++.++.+++++|+..+.+     ++.    |+||||+|+..|+. +++++|++.++. ++.++..|+||||+|+..
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-----~~~----~~~~l~~A~~~~~~-~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-----INL----GNTALHYAAENGNL-EIVKLLLENGAD-INSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-----TTS----SSBHHHHHHHTTTH-HHHHHHHHTTTC-TT-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-----CCC----CCCHHHHHHHcCCH-HHHHHHHHhccc-ccccCCCCCCHHHHHHHc
Confidence            6788888888888888887665     222    77888888888885 888888888854 778888888888888888


Q ss_pred             CCHHHHHHHHhccCCC
Q 043390          135 GKIEIFNFLAGKNFRL  150 (150)
Q Consensus       135 g~~~~~~~L~~~~~~l  150 (150)
                      |+.+++++|+++|+++
T Consensus        70 ~~~~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   70 GNLEIVKLLLEHGADV   85 (89)
T ss_dssp             THHHHHHHHHHTTT-T
T ss_pred             CCHHHHHHHHHcCCCC
Confidence            8888888888887653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.5e-20  Score=141.01  Aligned_cols=134  Identities=17%  Similarity=0.118  Sum_probs=102.0

Q ss_pred             ccchhhhhcCHHHHHHHHhhcCHH-HHHHHHHhCCCCCccccccCCCcHHHHHHhhC-ChHHHHHHHhhCCCCccccccc
Q 043390            7 EETDAKNKINSELYNALMIKQDEQ-KVIELCRKVPDHSLCVFTIYDDTVLHVAAYTK-KSDLVMKLLDELPDQSLDKMTR   84 (150)
Q Consensus         7 ~~~~~~~~~~~~l~~a~~~~~~~~-~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~-~~~~v~~ll~~~~~~~~~~~~~   84 (150)
                      +....+....++||.|+. .++.. .++.++..+.+  ++..|..|.||||+|+..| ..++++.|+..|++     ++.
T Consensus       265 ~vn~~d~~g~TpLh~Aa~-~~~~~~iv~lLl~~gad--in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad-----in~  336 (682)
T PHA02876        265 SVNSIDDCKNTPLHHASQ-APSLSRLVPKLLERGAD--VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD-----VNA  336 (682)
T ss_pred             CCCCCCCCCCCHHHHHHh-CCCHHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC-----CCC
Confidence            333334455677888888 88875 44555555433  6677888899999999888 47888888888887     577


Q ss_pred             CCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           85 QNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        85 ~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      .|..|.||||+|+..+...+++.+|++.|+. ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus       337 ~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad  400 (682)
T PHA02876        337 ADRLYITPLHQASTLDRNKDIVITLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD  400 (682)
T ss_pred             cccCCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            8888888888888765434788888888755 888888888888888888888888888888765

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.6e-20  Score=136.36  Aligned_cols=138  Identities=17%  Similarity=0.103  Sum_probs=97.7

Q ss_pred             CcccccchhhhhcCHHHHHHHHhh---cCHHHHHHHHHhCCCCCc-cccccCCCcHHHHHHhh--CChHHHHHHHhhCCC
Q 043390            3 SIGIEETDAKNKINSELYNALMIK---QDEQKVIELCRKVPDHSL-CVFTIYDDTVLHVAAYT--KKSDLVMKLLDELPD   76 (150)
Q Consensus         3 s~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~~ll~~~~~~~~-~~~~~~g~~~L~~a~~~--~~~~~v~~ll~~~~~   76 (150)
                      +.|++....+....++|+.|+. .   ++.+.++.|++.+.+  + +..|..|+||||+|+..  ++.+++++|++.|++
T Consensus        96 ~~Gadin~~d~~g~tpL~~a~~-~~~~~~~eiv~~Ll~~Gad--in~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad  172 (494)
T PHA02989         96 KFGADINLKTFNGVSPIVCFIY-NSNINNCDMLRFLLSKGIN--VNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN  172 (494)
T ss_pred             HCCCCCCCCCCCCCcHHHHHHH-hcccCcHHHHHHHHHCCCC--cccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence            3454444444445566776655 4   567777788877554  5 56778888888887654  467888888888887


Q ss_pred             Cccccccc-CCCCCChHHHHHHHcC----CcHHHHHHHHhhCCc------------------------------------
Q 043390           77 QSLDKMTR-QNKAGNTILHETASSS----HALPVADKLFRKAPG------------------------------------  115 (150)
Q Consensus        77 ~~~~~~~~-~~~~g~t~l~~a~~~g----~~~~~~~~Ll~~~~~------------------------------------  115 (150)
                           ++. .+..|.||||+|+..+    +. +++++|++.|+.                                    
T Consensus       173 -----i~~~~~~~g~tpL~~a~~~~~~~~~~-~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~  246 (494)
T PHA02989        173 -----LFEKTSLYGLTPMNIYLRNDIDVISI-KVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKY  246 (494)
T ss_pred             -----ccccccccCCChHHHHHhcccccccH-HHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhC
Confidence                 344 5677888888877653    64 788888877642                                    


Q ss_pred             -ccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390          116 -LLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       116 -~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                       +++.+|..|+||||+|+..|+.+++++|+++|+.
T Consensus       247 advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad  281 (494)
T PHA02989        247 IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD  281 (494)
T ss_pred             CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC
Confidence             1344566688888888888888888888888875

>PHA02946 ankyin-like protein; Provisional

Probab=99.85  E-value=2.2e-20  Score=133.76  Aligned_cols=122  Identities=13%  Similarity=0.116  Sum_probs=99.2

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCC--hHHHHHHHhhCCCCcccccccCCCCCChH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKK--SDLVMKLLDELPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~--~~~v~~ll~~~~~~~~~~~~~~~~~g~t~   92 (150)
                      ..++++ ++. .++.+.++.|+..+.+  ++..|..|+||||+|+..++  .+++++|+..|++     ++.+|.+|+||
T Consensus       141 g~tpL~-aa~-~~~~~vv~~Ll~~gad--~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad-----in~~d~~G~Tp  211 (446)
T PHA02946        141 GCGPLL-ACT-DPSERVFKKIMSIGFE--ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS-----PSKPDHDGNTP  211 (446)
T ss_pred             CCcHHH-HHH-CCChHHHHHHHhcccc--ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC-----CcccCCCCCCH
Confidence            344454 666 6777777777776443  67788899999999887554  5889999999998     68899999999


Q ss_pred             HHHHHHcC--CcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCC-HHHHHHHHhccC
Q 043390           93 LHETASSS--HALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGK-IEIFNFLAGKNF  148 (150)
Q Consensus        93 l~~a~~~g--~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~-~~~~~~L~~~~~  148 (150)
                      ||+|+..+  +. +++++|+. + .+++.+|..|.||||+|++.++ .+++++|+++|+
T Consensus       212 LH~Aa~~~~~~~-~iv~lLl~-g-adin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~  267 (446)
T PHA02946        212 LHIVCSKTVKNV-DIINLLLP-S-TDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSN  267 (446)
T ss_pred             HHHHHHcCCCcH-HHHHHHHc-C-CCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCC
Confidence            99999986  64 89999885 5 4599999999999999999988 488999998875

>PHA02798 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.2e-20  Score=136.79  Aligned_cols=115  Identities=17%  Similarity=0.137  Sum_probs=100.2

Q ss_pred             hcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhh-----CChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcC
Q 043390           26 KQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYT-----KKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSS  100 (150)
Q Consensus        26 ~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~-----~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g  100 (150)
                      .++.+.++.|++.+.+  ++..|..|.||||.|+.+     ++.+++++|+++|++     ++.+|..|.||||+|+..+
T Consensus        48 ~~~~~iv~~Ll~~Gad--vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad-----iN~~d~~G~TpLh~a~~~~  120 (489)
T PHA02798         48 SPSTDIVKLFINLGAN--VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD-----INKKNSDGETPLYCLLSNG  120 (489)
T ss_pred             CCCHHHHHHHHHCCCC--CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC-----CCCCCCCcCcHHHHHHHcC
Confidence            4467888999988655  778899999999998764     568999999999998     6889999999999999875


Q ss_pred             ---CcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCC---HHHHHHHHhccCC
Q 043390          101 ---HALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGK---IEIFNFLAGKNFR  149 (150)
Q Consensus       101 ---~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~---~~~~~~L~~~~~~  149 (150)
                         +. +++++|++.|++ ++.+|..|.||||+|++.++   .+++++|+++|+.
T Consensus       121 ~~~~~-~iv~~Ll~~Gad-vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad  173 (489)
T PHA02798        121 YINNL-EILLFMIENGAD-TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD  173 (489)
T ss_pred             CcChH-HHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC
Confidence               54 899999999965 99999999999999999987   8999999999875

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.84  E-value=1.5e-20  Score=143.08  Aligned_cols=128  Identities=24%  Similarity=0.202  Sum_probs=113.0

Q ss_pred             hhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCC
Q 043390           11 AKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGN   90 (150)
Q Consensus        11 ~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~   90 (150)
                      .....-..++.++. .+....+..+++.+..  .+.++..|.||||.||..|+.++|++|+++|++     ++.++..|+
T Consensus       503 ~~~~~l~~lhla~~-~~~v~~~~~l~~~ga~--v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd-----v~ak~~~G~  574 (1143)
T KOG4177|consen  503 DAKKGLTPLHLAAD-EDTVKVAKILLEHGAN--VDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD-----VNAKDKLGY  574 (1143)
T ss_pred             cchhccchhhhhhh-hhhHHHHHHHhhcCCc--eehhcccccchHHHHHhcCCchHHHHhhhCCcc-----ccccCCCCC
Confidence            33445556888888 8888888777877444  667888999999999999999999999999999     789999999


Q ss_pred             hHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390           91 TILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        91 t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      ||||.|+..|+. +|+.+|++.|+. +|..+.+|.|||++|++.|+.++++.|+..+.
T Consensus       575 TPLH~Aa~~G~~-~i~~LLlk~GA~-vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~  630 (1143)
T KOG4177|consen  575 TPLHQAAQQGHN-DIAELLLKHGAS-VNAADLDGFTPLHIAVRLGYLSVVKLLKVVTA  630 (1143)
T ss_pred             ChhhHHHHcChH-HHHHHHHHcCCC-CCcccccCcchhHHHHHhcccchhhHHHhccC
Confidence            999999999996 999999999976 99999999999999999999999999987765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.84  E-value=1.7e-21  Score=128.11  Aligned_cols=122  Identities=22%  Similarity=0.176  Sum_probs=92.6

Q ss_pred             HHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 043390           19 LYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETAS   98 (150)
Q Consensus        19 l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~   98 (150)
                      +|..++ .|+.-.|+-.|+. ...+++..|..|.+|||+|++.|+..+++.|+..|+.     +|..+....||||+|+.
T Consensus         4 if~wcr-egna~qvrlwld~-tehdln~gddhgfsplhwaakegh~aivemll~rgar-----vn~tnmgddtplhlaaa   76 (448)
T KOG0195|consen    4 IFGWCR-EGNAFQVRLWLDD-TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-----VNSTNMGDDTPLHLAAA   76 (448)
T ss_pred             hhhhhh-cCCeEEEEEEecC-cccccccccccCcchhhhhhhcccHHHHHHHHhcccc-----cccccCCCCcchhhhhh
Confidence            555666 6666555444443 3556777788888888888888888888888888887     67777777888888888


Q ss_pred             cCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           99 SSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        99 ~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      .|+. +++..|+++.++ +|+.|..|.||||+||-.|+..+.+-|+..|+.
T Consensus        77 hghr-divqkll~~kad-vnavnehgntplhyacfwgydqiaedli~~ga~  125 (448)
T KOG0195|consen   77 HGHR-DIVQKLLSRKAD-VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAA  125 (448)
T ss_pred             cccH-HHHHHHHHHhcc-cchhhccCCCchhhhhhhcHHHHHHHHHhccce
Confidence            8885 888888888754 888888888888888888888888888877764

>PHA02730 ankyrin-like protein; Provisional

Probab=99.84  E-value=7.2e-20  Score=134.25  Aligned_cols=140  Identities=11%  Similarity=0.099  Sum_probs=114.9

Q ss_pred             CCcccccchhhhhcCHHHHHHHHhhcC----HHHHHHHHHhCCCCCccccccCCCcHHHH---HHhhC---------ChH
Q 043390            2 SSIGIEETDAKNKINSELYNALMIKQD----EQKVIELCRKVPDHSLCVFTIYDDTVLHV---AAYTK---------KSD   65 (150)
Q Consensus         2 ~s~~~~~~~~~~~~~~~l~~a~~~~~~----~~~~~~ll~~~~~~~~~~~~~~g~~~L~~---a~~~~---------~~~   65 (150)
                      ++.|++.... ....++||.|+. .++    .+.++.|+..+.+.+++.+|..|.||||.   |...+         ..+
T Consensus       366 Is~GAdIN~k-~~G~TpLH~Aa~-~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~  443 (672)
T PHA02730        366 LDNGATMDKT-TDNNYPLHDYFV-NNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILID  443 (672)
T ss_pred             HHCCCCCCcC-CCCCcHHHHHHH-HcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHH
Confidence            4567665543 566788999998 764    78888888887655678889999999984   33232         135


Q ss_pred             HHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccC-CCCCHHHHHHHc--CCHHHHHH
Q 043390           66 LVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNN-NGGTALLGAAHN--GKIEIFNF  142 (150)
Q Consensus        66 ~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~-~g~tpl~~a~~~--g~~~~~~~  142 (150)
                      ++++|+.+|++     ++.+|..|.||||+|+..++. +++++|++.|+. ++.++. .|.||||.|+..  ++.+++++
T Consensus       444 ivk~LIs~GAD-----INakD~~G~TPLh~Aa~~~~~-eive~LI~~GAd-IN~~d~~~g~TaL~~Aa~~~~~~~eIv~~  516 (672)
T PHA02730        444 VFDILSKYMDD-----IDMIDNENKTLLYYAVDVNNI-QFARRLLEYGAS-VNTTSRSIINTAIQKSSYRRENKTKLVDL  516 (672)
T ss_pred             HHHHHHhcccc-----hhccCCCCCCHHHHHHHhCCH-HHHHHHHHCCCC-CCCCCCcCCcCHHHHHHHhhcCcHHHHHH
Confidence            69999999998     799999999999999999996 999999999965 999997 599999999874  78999999


Q ss_pred             HHhccCCC
Q 043390          143 LAGKNFRL  150 (150)
Q Consensus       143 L~~~~~~l  150 (150)
                      |+++|+.+
T Consensus       517 LLs~ga~i  524 (672)
T PHA02730        517 LLSYHPTL  524 (672)
T ss_pred             HHHcCCCH
Confidence            99999863

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=9.5e-20  Score=115.12  Aligned_cols=100  Identities=19%  Similarity=0.250  Sum_probs=85.9

Q ss_pred             ccccccCCCcHHHHHHhhCChHHHHHHHhh------CCCCcccccccCCCCCChHHHHHHHcCCc---HHHHHHHHhhCC
Q 043390           44 LCVFTIYDDTVLHVAAYTKKSDLVMKLLDE------LPDQSLDKMTRQNKAGNTILHETASSSHA---LPVADKLFRKAP  114 (150)
Q Consensus        44 ~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~------~~~~~~~~~~~~~~~g~t~l~~a~~~g~~---~~~~~~Ll~~~~  114 (150)
                      ++.++..|.|+||+|+..|+.++++.|+..      |++     ++.+|..|.||||+|+..|+.   .+++++|++.++
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-----in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga   88 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-----LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGA   88 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-----hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence            345678999999999999999999988653      333     788999999999999999983   278999999986


Q ss_pred             cccccccC-CCCCHHHHHHHcCCHHHHHHHHh-ccCC
Q 043390          115 GLLGMRNN-NGGTALLGAAHNGKIEIFNFLAG-KNFR  149 (150)
Q Consensus       115 ~~~~~~~~-~g~tpl~~a~~~g~~~~~~~L~~-~~~~  149 (150)
                      . ++.++. .|+||||+|+..++.+++++|++ .|+.
T Consensus        89 d-in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~  124 (169)
T PHA02741         89 D-INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID  124 (169)
T ss_pred             C-CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            5 888885 89999999999999999999997 4765

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.82  E-value=4.2e-20  Score=117.04  Aligned_cols=119  Identities=18%  Similarity=0.143  Sum_probs=84.1

Q ss_pred             HHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 043390           19 LYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETAS   98 (150)
Q Consensus        19 l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~   98 (150)
                      +..++. ..+.+.+..+...    .+|..|+.|.|||.+|+.+|++++|++|++.|+++     ......-.++|.+|..
T Consensus       133 ~slsVh-ql~L~~~~~~~~n----~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-----~~lgk~resALsLAt~  202 (296)
T KOG0502|consen  133 LSLSVH-QLHLDVVDLLVNN----KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-----DALGKYRESALSLATR  202 (296)
T ss_pred             hhHHHH-HHHHHHHHHHhhc----cccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-----hhhhhhhhhhHhHHhc
Confidence            444555 4444443332222    25566788888888888888888888888888874     4555566678888887


Q ss_pred             cCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           99 SSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        99 ~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      .|.. +++++|+.++.+ +|..|.+|.|||-+|++-+|.+|++.|+..|+.
T Consensus       203 ggyt-diV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd  251 (296)
T KOG0502|consen  203 GGYT-DIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGAD  251 (296)
T ss_pred             CChH-HHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHhcCCC
Confidence            7775 888888888754 777888888888888888888888888877764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.82  E-value=3e-19  Score=101.46  Aligned_cols=89  Identities=28%  Similarity=0.349  Sum_probs=77.2

Q ss_pred             HHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 043390           19 LYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETAS   98 (150)
Q Consensus        19 l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~   98 (150)
                      |+.|+. .|+.+.++.++....+  ++.    |.+|||+|+..|+.+++++|+++|++     ++.+|..|+||||+|+.
T Consensus         1 L~~A~~-~~~~~~~~~ll~~~~~--~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~L~~A~~   68 (89)
T PF12796_consen    1 LHIAAQ-NGNLEILKFLLEKGAD--INL----GNTALHYAAENGNLEIVKLLLENGAD-----INSQDKNGNTALHYAAE   68 (89)
T ss_dssp             HHHHHH-TTTHHHHHHHHHTTST--TTS----SSBHHHHHHHTTTHHHHHHHHHTTTC-----TT-BSTTSSBHHHHHHH
T ss_pred             CHHHHH-cCCHHHHHHHHHCcCC--CCC----CCCHHHHHHHcCCHHHHHHHHHhccc-----ccccCCCCCCHHHHHHH
Confidence            688999 9999999999997655  322    88999999999999999999999998     68899999999999999


Q ss_pred             cCCcHHHHHHHHhhCCccccccc
Q 043390           99 SSHALPVADKLFRKAPGLLGMRN  121 (150)
Q Consensus        99 ~g~~~~~~~~Ll~~~~~~~~~~~  121 (150)
                      .|+. +++++|++.|+. ++.+|
T Consensus        69 ~~~~-~~~~~Ll~~g~~-~~~~n   89 (89)
T PF12796_consen   69 NGNL-EIVKLLLEHGAD-VNIRN   89 (89)
T ss_dssp             TTHH-HHHHHHHHTTT--TTSS-
T ss_pred             cCCH-HHHHHHHHcCCC-CCCcC
Confidence            9996 999999999865 77654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02795 ankyrin-like protein; Provisional

Probab=99.81  E-value=5.2e-19  Score=124.43  Aligned_cols=134  Identities=13%  Similarity=-0.008  Sum_probs=107.1

Q ss_pred             hhhhcCHHHHHHHH-hhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCc-ccccccCCCC
Q 043390           11 AKNKINSELYNALM-IKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQS-LDKMTRQNKA   88 (150)
Q Consensus        11 ~~~~~~~~l~~a~~-~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~-~~~~~~~~~~   88 (150)
                      ......+.||.++. -.|+.+.++.|+..+++.  +.  .++.||+|.|+..++.+++++|+.+|++.. ....+..+..
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI--n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~  187 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI--YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKII  187 (437)
T ss_pred             ccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC--CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhh
Confidence            34445666777664 137888999999997774  33  345899999999999999999999997521 0001111245


Q ss_pred             CChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           89 GNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        89 g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      +.+++|.|+..++. +++++|++.|++ ++.+|..|.||||+|+..|+.+++++|+++|+.+
T Consensus       188 ~~t~l~~a~~~~~~-eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI  247 (437)
T PHA02795        188 QYTRGFLVDEPTVL-EIYKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANV  247 (437)
T ss_pred             ccchhHHHHhcCHH-HHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            78999999999996 999999999965 9999999999999999999999999999999863

>PHA02917 ankyrin-like protein; Provisional

Probab=99.81  E-value=6.7e-19  Score=130.86  Aligned_cols=121  Identities=16%  Similarity=0.067  Sum_probs=98.6

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHH--hhCChHHHHHHHhhCCCCcccccccCC---C----
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAA--YTKKSDLVMKLLDELPDQSLDKMTRQN---K----   87 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~--~~~~~~~v~~ll~~~~~~~~~~~~~~~---~----   87 (150)
                      ..++.|+. .++.+.++.|+..+.+  ++.+|..|+||||.++  ..++.+++++|+++|+++     +.+|   .    
T Consensus       105 ~~~~~a~~-~~~~e~vk~Ll~~Gad--in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-----n~~d~~~~~g~~  176 (661)
T PHA02917        105 IFSYMKSK-NVDVDLIKVLVEHGFD--LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-----LYEDEDDEYGYA  176 (661)
T ss_pred             hHHHHHhh-cCCHHHHHHHHHcCCC--CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-----cccccccccccc
Confidence            34566777 7888888888887555  7788999999999654  578999999999999984     4333   2    


Q ss_pred             -------CCChHHHHHHH-----------cCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCH--HHHHHHHhcc
Q 043390           88 -------AGNTILHETAS-----------SSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKI--EIFNFLAGKN  147 (150)
Q Consensus        88 -------~g~t~l~~a~~-----------~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~--~~~~~L~~~~  147 (150)
                             .+.||||+|+.           .++. +++++|++.|++ ++.+|.+|.||||+|+.+|+.  +++++|++ |
T Consensus       177 ~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~-eiv~~Li~~Gad-vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g  253 (661)
T PHA02917        177 YDDYQPRNCGTVLHLYIISHLYSESDTRAYVRP-EVVKCLINHGIK-PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-G  253 (661)
T ss_pred             cccccccccccHHHHHHhhcccccccccccCcH-HHHHHHHHCCCC-cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-C
Confidence                   23699999986           3565 999999999965 999999999999999999985  79999985 6


Q ss_pred             C
Q 043390          148 F  148 (150)
Q Consensus       148 ~  148 (150)
                      +
T Consensus       254 ~  254 (661)
T PHA02917        254 I  254 (661)
T ss_pred             C
Confidence            5

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.79  E-value=3.8e-19  Score=112.73  Aligned_cols=124  Identities=19%  Similarity=0.107  Sum_probs=110.8

Q ss_pred             hhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCC
Q 043390           11 AKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGN   90 (150)
Q Consensus        11 ~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~   90 (150)
                      .++...++|.+|+. +|++..|+.||..+++  +...-++..++|..|++.|..++|+.|+..+.+     +|.-|.+|-
T Consensus       156 ~De~GfTpLiWAaa-~G~i~vV~fLL~~GAd--p~~lgk~resALsLAt~ggytdiV~lLL~r~vd-----VNvyDwNGg  227 (296)
T KOG0502|consen  156 CDEFGFTPLIWAAA-KGHIPVVQFLLNSGAD--PDALGKYRESALSLATRGGYTDIVELLLTREVD-----VNVYDWNGG  227 (296)
T ss_pred             ccccCchHhHHHHh-cCchHHHHHHHHcCCC--hhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC-----cceeccCCC
Confidence            44566778999999 9999999999998766  666777888999999999999999999999998     789999999


Q ss_pred             hHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHh
Q 043390           91 TILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAG  145 (150)
Q Consensus        91 t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~  145 (150)
                      |||.+|+..++. +|++.|+..|+. ++..+..|.+++..|+..|+. +++..++
T Consensus       228 TpLlyAvrgnhv-kcve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie  279 (296)
T KOG0502|consen  228 TPLLYAVRGNHV-KCVESLLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIE  279 (296)
T ss_pred             ceeeeeecCChH-HHHHHHHhcCCC-cccccccCCcHHHHHHHhhhH-HHHHHHH
Confidence            999999999997 999999999965 999999999999999999998 5555544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=1.9e-18  Score=117.08  Aligned_cols=98  Identities=12%  Similarity=0.034  Sum_probs=85.2

Q ss_pred             ccccCCCcH-HHHHHhhCChHHHHHHHhhCCCCcccccccC----CCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccc
Q 043390           46 VFTIYDDTV-LHVAAYTKKSDLVMKLLDELPDQSLDKMTRQ----NKAGNTILHETASSSHALPVADKLFRKAPGLLGMR  120 (150)
Q Consensus        46 ~~~~~g~~~-L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~----~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~  120 (150)
                      .+|..|+++ ||.|+..++.+++++|++.|++     ++.+    +..|.||||+|+..++. +++++|++.|+. ++.+
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAd-----iN~~~~~sd~~g~TpLh~Aa~~~~~-eivklLL~~GAD-VN~~   99 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGAD-----PEAPFPLSENSKTNPLIYAIDCDND-DAAKLLIRYGAD-VNRY   99 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCC-----ccccCcccCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC-cCcc
Confidence            457777765 7777888999999999999999     4555    46899999999999996 999999999965 9886


Q ss_pred             -cCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390          121 -NNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       121 -~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                       +..|.||||+|+..++.+++++|++.|+.+
T Consensus       100 ~~~~g~TpLh~Aa~~~~~eivklLL~~GAdi  130 (300)
T PHA02884        100 AEEAKITPLYISVLHGCLKCLEILLSYGADI  130 (300)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence             457999999999999999999999999863

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=5.2e-19  Score=119.29  Aligned_cols=120  Identities=21%  Similarity=0.194  Sum_probs=60.3

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhh-----CChHHHHHHHhhCCCCcccccccC-CCC
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYT-----KKSDLVMKLLDELPDQSLDKMTRQ-NKA   88 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~-----~~~~~v~~ll~~~~~~~~~~~~~~-~~~   88 (150)
                      ..+.||+++. +++++.|..||+.+ -.+++..++.|+||+++++..     .+.++|..|+..|..      |.+ ...
T Consensus       268 GNTALHYsVS-HaNF~VV~~LLDSg-vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV------NaKAsQ~  339 (452)
T KOG0514|consen  268 GNTALHYAVS-HANFDVVSILLDSG-VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV------NAKASQH  339 (452)
T ss_pred             CCeeeeeeec-ccchHHHHHHhccC-cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc------chhhhhh
Confidence            3455777777 77777777777652 223444444455554444322     112344444444322      222 224


Q ss_pred             CChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHH
Q 043390           89 GNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLA  144 (150)
Q Consensus        89 g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~  144 (150)
                      |.|+|++|+.+|+. ++++.|+..|++ +|.+|.+|.|+|+.|++|||.|++++|+
T Consensus       340 gQTALMLAVSHGr~-d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLL  393 (452)
T KOG0514|consen  340 GQTALMLAVSHGRV-DMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLL  393 (452)
T ss_pred             cchhhhhhhhcCcH-HHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHh
Confidence            55555555555553 555555555533 5555555555555555555555555554

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.78  E-value=1.2e-18  Score=132.98  Aligned_cols=131  Identities=20%  Similarity=0.125  Sum_probs=98.2

Q ss_pred             hcCHHHHHHHHhhc-CHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCc--------------
Q 043390           14 KINSELYNALMIKQ-DEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQS--------------   78 (150)
Q Consensus        14 ~~~~~l~~a~~~~~-~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~--------------   78 (150)
                      ...+.+|.++. .| ..+....++...  .+++.....|.||||.|...|+.++++.+++.++..+              
T Consensus       439 lG~T~lhvaa~-~g~~~~~~~~l~~~g--~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~  515 (1143)
T KOG4177|consen  439 LGYTPLHVAAK-KGRYLQIARLLLQYG--ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAA  515 (1143)
T ss_pred             cCCChhhhhhh-cccHhhhhhhHhhcC--CCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhh
Confidence            33555777776 66 333333334432  2255666677777777777777777666666553210              


Q ss_pred             --------------ccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHH
Q 043390           79 --------------LDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLA  144 (150)
Q Consensus        79 --------------~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~  144 (150)
                                    ...++.++.+|+||||.|+..|+. .+|++|++.|++ ++.+++.|+||||.|+..|+.+|+.+|+
T Consensus       516 ~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v-~~VkfLLe~gAd-v~ak~~~G~TPLH~Aa~~G~~~i~~LLl  593 (1143)
T KOG4177|consen  516 DEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNV-DLVKFLLEHGAD-VNAKDKLGYTPLHQAAQQGHNDIAELLL  593 (1143)
T ss_pred             hhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCc-hHHHHhhhCCcc-ccccCCCCCChhhHHHHcChHHHHHHHH
Confidence                          013577888999999999999997 999999999965 9999999999999999999999999999


Q ss_pred             hccCC
Q 043390          145 GKNFR  149 (150)
Q Consensus       145 ~~~~~  149 (150)
                      ++|+.
T Consensus       594 k~GA~  598 (1143)
T KOG4177|consen  594 KHGAS  598 (1143)
T ss_pred             HcCCC
Confidence            99986

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=2.6e-18  Score=108.19  Aligned_cols=99  Identities=15%  Similarity=0.115  Sum_probs=84.2

Q ss_pred             ccccccCCCcHHHHHHhhCCh----HHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHH---HHHHHHhhCCcc
Q 043390           44 LCVFTIYDDTVLHVAAYTKKS----DLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALP---VADKLFRKAPGL  116 (150)
Q Consensus        44 ~~~~~~~g~~~L~~a~~~~~~----~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~---~~~~Ll~~~~~~  116 (150)
                      .+..+..+.++||.|++.|+.    +++++|...+..     ++.+|..|+||||+|+..|+. +   ++++|++.|+. 
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-----~~~~d~~g~t~Lh~Aa~~g~~-~~~~~i~~Ll~~Gad-   85 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL-----LHRYDHHGRQCTHMVAWYDRA-NAVMKIELLVNMGAD-   85 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-----hhccCCCCCcHHHHHHHhCcc-CHHHHHHHHHHcCCC-
Confidence            444677888999999999997    566677777776     678899999999999999874 5   48999999965 


Q ss_pred             ccccc-CCCCCHHHHHHHcCCHHHHHHHHh-ccCC
Q 043390          117 LGMRN-NNGGTALLGAAHNGKIEIFNFLAG-KNFR  149 (150)
Q Consensus       117 ~~~~~-~~g~tpl~~a~~~g~~~~~~~L~~-~~~~  149 (150)
                      ++.++ ..|.||||+|+..|+.+++++|++ .|+.
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad  120 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYELAEWLCRQLGVN  120 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC
Confidence            99998 589999999999999999999995 6765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.78  E-value=1.7e-18  Score=114.15  Aligned_cols=109  Identities=28%  Similarity=0.214  Sum_probs=99.0

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      .-.+||++++ .|+...+..|+..++.  ++..+....+|||.|+..||.++|+.|++..++     +|..+..|+||||
T Consensus        34 gfsplhwaak-egh~aivemll~rgar--vn~tnmgddtplhlaaahghrdivqkll~~kad-----vnavnehgntplh  105 (448)
T KOG0195|consen   34 GFSPLHWAAK-EGHVAIVEMLLSRGAR--VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD-----VNAVNEHGNTPLH  105 (448)
T ss_pred             Ccchhhhhhh-cccHHHHHHHHhcccc--cccccCCCCcchhhhhhcccHHHHHHHHHHhcc-----cchhhccCCCchh
Confidence            3456999999 9999999999998766  678888889999999999999999999999988     7999999999999


Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHH
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAH  133 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~  133 (150)
                      +|+..|. ..+++-|+..|+. ++..|++|.|||..|.-
T Consensus       106 yacfwgy-dqiaedli~~ga~-v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen  106 YACFWGY-DQIAEDLISCGAA-VNICNKKGMTPLDKAKP  142 (448)
T ss_pred             hhhhhcH-HHHHHHHHhccce-eeecccCCCCchhhhch
Confidence            9999999 5899999999977 99999999999987643

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.77  E-value=3.2e-18  Score=120.12  Aligned_cols=134  Identities=20%  Similarity=0.187  Sum_probs=113.9

Q ss_pred             hhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcc------------
Q 043390           12 KNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSL------------   79 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~------------   79 (150)
                      +....+.+|.++. ..+.++|+.+++.+..  ++..|..||||||.|+.-|+..++.+++..|++...            
T Consensus        70 n~DglTalhq~~i-d~~~e~v~~l~e~ga~--Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~  146 (527)
T KOG0505|consen   70 NVDGLTALHQACI-DDNLEMVKFLVENGAN--VNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLA  146 (527)
T ss_pred             CCccchhHHHHHh-cccHHHHHHHHHhcCC--ccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccc
Confidence            3445667999999 9999999999998555  788899999999999999999999999999886200            


Q ss_pred             ------------------------------------------cccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCccc
Q 043390           80 ------------------------------------------DKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLL  117 (150)
Q Consensus        80 ------------------------------------------~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~  117 (150)
                                                                .....++..|.|.||+|+.+|.. ++.++|+..+.. +
T Consensus       147 e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~-e~~~lLl~ag~~-~  224 (527)
T KOG0505|consen  147 EDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYT-EVAALLLQAGYS-V  224 (527)
T ss_pred             cCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHH-HHHHHHHHhccC-c
Confidence                                                      01234555599999999999996 999999999966 9


Q ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390          118 GMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       118 ~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      +.+|.+||||||.|+..|+.++.++|+++|+.+
T Consensus       225 ~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~  257 (527)
T KOG0505|consen  225 NIKDYDGWTPLHAAAHWGQEDACELLVEHGADM  257 (527)
T ss_pred             ccccccCCCcccHHHHhhhHhHHHHHHHhhccc
Confidence            999999999999999999999999999999764

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=5.2e-17  Score=97.12  Aligned_cols=121  Identities=27%  Similarity=0.303  Sum_probs=107.4

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHH
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTIL   93 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l   93 (150)
                      ...++++.|+. .++.+.+..++..+..  .+..+..|.+|+|.|+..+..+++++++..+..     ++..+..|.||+
T Consensus         6 ~g~t~l~~a~~-~~~~~~i~~li~~~~~--~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-----~~~~~~~~~~~l   77 (126)
T cd00204           6 DGRTPLHLAAS-NGHLEVVKLLLENGAD--VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-----VNARDKDGNTPL   77 (126)
T ss_pred             CCCCHHHHHHH-cCcHHHHHHHHHcCCC--CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----ccccCCCCCCHH
Confidence            34567999999 9999999999988655  367788999999999999999999999999976     567888999999


Q ss_pred             HHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHH
Q 043390           94 HETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLA  144 (150)
Q Consensus        94 ~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~  144 (150)
                      |+|+..++. +++++|+..+.. .+..+..+.||++.|...++.+++++|+
T Consensus        78 ~~a~~~~~~-~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          78 HLAARNGNL-DVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHcCcH-HHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999996 999999998854 7888899999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02730 ankyrin-like protein; Provisional

Probab=99.77  E-value=1.1e-17  Score=122.99  Aligned_cols=130  Identities=16%  Similarity=0.038  Sum_probs=105.8

Q ss_pred             hhcCHHHHHHHHhhc---CHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhC--ChHHHHHHHhhCCCCcccccccCCC
Q 043390           13 NKINSELYNALMIKQ---DEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTK--KSDLVMKLLDELPDQSLDKMTRQNK   87 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~---~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~--~~~~v~~ll~~~~~~~~~~~~~~~~   87 (150)
                      ....++||.|+. .+   +.+.++.|+..+++  ++.+|..|+||||+|+..+  +.+++++|+..|++.   ..+..+.
T Consensus        39 ~~G~TaLh~A~~-~~~~~~~eivklLLs~GAd--in~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~---~~~~~~~  112 (672)
T PHA02730         39 RRGNNALHCYVS-NKCDTDIKIVRLLLSRGVE--RLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNA---SNELTSN  112 (672)
T ss_pred             CCCCcHHHHHHH-cCCcCcHHHHHHHHhCCCC--CcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCC---Ccccccc
Confidence            345678999998 76   48889999988655  7788999999999999866  689999999997763   1355676


Q ss_pred             CCChHHHHHHH--cCCcHHHHHHHHhhCCcccccccC-----CCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           88 AGNTILHETAS--SSHALPVADKLFRKAPGLLGMRNN-----NGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        88 ~g~t~l~~a~~--~g~~~~~~~~Ll~~~~~~~~~~~~-----~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      -+.+|||.++.  +++. +++++|+..++.+++...+     .|.+|++++...++.+++++|++.|+.
T Consensus       113 ~~d~~l~~y~~s~n~~~-~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~  180 (672)
T PHA02730        113 INDFDLYSYMSSDNIDL-RLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECY  180 (672)
T ss_pred             cCCchHHHHHHhcCCcH-HHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCc
Confidence            78899998888  7886 8999999755445665533     688999999999999999999999875

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.76  E-value=1.1e-17  Score=113.06  Aligned_cols=126  Identities=22%  Similarity=0.199  Sum_probs=104.4

Q ss_pred             hhhcCHHHHHHHH----hhcCHHHHHHHHHhCCCCCcccc-ccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCC
Q 043390           12 KNKINSELYNALM----IKQDEQKVIELCRKVPDHSLCVF-TIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQN   86 (150)
Q Consensus        12 ~~~~~~~l~~a~~----~~~~~~~~~~ll~~~~~~~~~~~-~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~   86 (150)
                      +....+++..++.    ...+...|.+|+.-   .++|.+ ...|.|+|++|+.+|+.++|+.|+.+|++     +|.+|
T Consensus       299 NrAGYtpiMLaALA~lk~~~d~~vV~~LF~m---gnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd-----VNiQD  370 (452)
T KOG0514|consen  299 NRAGYTPVMLAALAKLKQPADRTVVERLFKM---GDVNAKASQHGQTALMLAVSHGRVDMVKALLACGAD-----VNIQD  370 (452)
T ss_pred             ccccccHHHHHHHHhhcchhhHHHHHHHHhc---cCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCC-----Ccccc
Confidence            4445556555543    12444577777664   235555 45699999999999999999999999999     79999


Q ss_pred             CCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Q 043390           87 KAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGK  146 (150)
Q Consensus        87 ~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~  146 (150)
                      .+|.|+|+.|+.+|+. +++++|+.....++...|.+|.|+|.+|...||.+|.-+|..+
T Consensus       371 dDGSTALMCA~EHGhk-EivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  371 DDGSTALMCAAEHGHK-EIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             CCccHHHhhhhhhChH-HHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            9999999999999996 9999999998777999999999999999999999998877643

>PHA02792 ankyrin-like protein; Provisional

Probab=99.76  E-value=1.1e-17  Score=122.01  Aligned_cols=125  Identities=13%  Similarity=0.083  Sum_probs=104.5

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCC--CcHHHHHHhhCCh---HHHHHHHhhCCCCcccccccCCCCC
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYD--DTVLHVAAYTKKS---DLVMKLLDELPDQSLDKMTRQNKAG   89 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g--~~~L~~a~~~~~~---~~v~~ll~~~~~~~~~~~~~~~~~g   89 (150)
                      ....++.|+. .|+.+.++.|+..+++  ++.+|..|  .||||.|+.....   +++++++.+|++     ++.+|..|
T Consensus       339 ~~n~~~~Aa~-~gn~eIVelLIs~GAD--IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-----IN~kD~~G  410 (631)
T PHA02792        339 HINKYFQKFD-NRDPKVVEYILKNGNV--VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD-----INKIDKHG  410 (631)
T ss_pred             cchHHHHHHH-cCCHHHHHHHHHcCCc--hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc-----cccccccC
Confidence            3445888988 9999999999998666  66677664  6899998776654   468889999998     78999999


Q ss_pred             ChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHH----------cCCHHHHHHHHhccCC
Q 043390           90 NTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAH----------NGKIEIFNFLAGKNFR  149 (150)
Q Consensus        90 ~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~----------~g~~~~~~~L~~~~~~  149 (150)
                      .||||+|+..++. +++++|++.|+. ++.++..|.|||++|+.          ....++++.|+++|+.
T Consensus       411 ~TPLh~Aa~~~n~-eivelLLs~GAD-IN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        411 RSILYYCIESHSV-SLVEWLIDNGAD-INITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT  478 (631)
T ss_pred             cchHHHHHHcCCH-HHHHHHHHCCCC-CCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999996 999999999965 99999999999999976          2235678899988865

>PHA02917 ankyrin-like protein; Provisional

Probab=99.76  E-value=2.2e-17  Score=122.84  Aligned_cols=126  Identities=13%  Similarity=0.077  Sum_probs=99.4

Q ss_pred             hhhcCHHHHHHHHhh---cCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCCh----HHHHHHHhhCCCCccccccc
Q 043390           12 KNKINSELYNALMIK---QDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKS----DLVMKLLDELPDQSLDKMTR   84 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~---~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~----~~v~~ll~~~~~~~~~~~~~   84 (150)
                      +....++||.|+. .   |+.+.++.|+..+.+  ++..+..|+||||+|+..|+.    ++++.|+..+...     +.
T Consensus        29 d~~g~t~Lh~a~~-~~~~~~~~~v~~Ll~~ga~--v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-----n~  100 (661)
T PHA02917         29 NQFKNNALHAYLF-NEHCNNVEVVKLLLDSGTN--PLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-----NI  100 (661)
T ss_pred             CCCCCcHHHHHHH-hhhcCcHHHHHHHHHCCCC--ccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-----CC
Confidence            3344667998755 4   779999999988655  567899999999999999985    4567777664431     22


Q ss_pred             CCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHH--HcCCHHHHHHHHhccCC
Q 043390           85 QNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAA--HNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        85 ~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~--~~g~~~~~~~L~~~~~~  149 (150)
                      .+  ..+++|+|+..++. +++++|++.|++ ++.+|.+|.|||+.++  ..|+.+++++|+++|+.
T Consensus       101 ~~--~~~~~~~a~~~~~~-e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~  163 (661)
T PHA02917        101 ND--FNIFSYMKSKNVDV-DLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCS  163 (661)
T ss_pred             CC--cchHHHHHhhcCCH-HHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCC
Confidence            22  23677888888896 999999999965 9999999999999643  57899999999999985

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.75  E-value=3.4e-18  Score=106.55  Aligned_cols=102  Identities=16%  Similarity=0.132  Sum_probs=77.9

Q ss_pred             cccccCCCcHHHHHHhhCChHHHHHHHhhC--CCCcccccccCCCCCChHHHHHHHcCCc--HHHHHHHHhhCCcccccc
Q 043390           45 CVFTIYDDTVLHVAAYTKKSDLVMKLLDEL--PDQSLDKMTRQNKAGNTILHETASSSHA--LPVADKLFRKAPGLLGMR  120 (150)
Q Consensus        45 ~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~--~~~~~~~~~~~~~~g~t~l~~a~~~g~~--~~~~~~Ll~~~~~~~~~~  120 (150)
                      +.+|..|.||||+|++.|+.  +..+...+  .+.+...+..+|..|.||||+|+..|..  .+++++|++.|+. ++.+
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-in~~   87 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-INGK   87 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-cccc
Confidence            34688899999999999984  23322222  1211122456789999999999999874  1468899999965 8988


Q ss_pred             cC-CCCCHHHHHHHcCCHHHHHHHHhc-cCC
Q 043390          121 NN-NGGTALLGAAHNGKIEIFNFLAGK-NFR  149 (150)
Q Consensus       121 ~~-~g~tpl~~a~~~g~~~~~~~L~~~-~~~  149 (150)
                      +. .|.||||+|+..|+.+++++|+++ |+.
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d  118 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVN  118 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            84 899999999999999999999974 654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.75  E-value=1.5e-17  Score=101.94  Aligned_cols=115  Identities=23%  Similarity=0.082  Sum_probs=101.6

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChH
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~   92 (150)
                      ....++||.|+. .|+.+.+..++..+++  ...+...||||||-||.-.+.+++.+|+++|++     ++.......||
T Consensus        95 ~D~YTpLHRAaY-n~h~div~~ll~~gAn--~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaD-----VnA~t~g~ltp  166 (228)
T KOG0512|consen   95 EDEYTPLHRAAY-NGHLDIVHELLLSGAN--KEAKTNEGWTPLHSACKWNNFEVAGRLLQHGAD-----VNAQTKGLLTP  166 (228)
T ss_pred             cccccHHHHHHh-cCchHHHHHHHHccCC--cccccccCccchhhhhcccchhHHHHHHhccCc-----ccccccccchh
Confidence            445667999999 9999999999998666  678899999999999999999999999999999     79999999999


Q ss_pred             HHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcC
Q 043390           93 LHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNG  135 (150)
Q Consensus        93 l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g  135 (150)
                      ||+|+...+....+.+|+......+..++..+.||+.+|.+.+
T Consensus       167 Lhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  167 LHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            9999998886577788877665667888999999999998875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.73  E-value=4.4e-17  Score=124.48  Aligned_cols=122  Identities=16%  Similarity=0.121  Sum_probs=97.9

Q ss_pred             cccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHH---------------
Q 043390            4 IGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVM---------------   68 (150)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~---------------   68 (150)
                      .|.+....+....++||.|+. .|+.+.++.|+..+.+  ++.+|..|+||||+|+..|+.++++               
T Consensus       547 ~G~d~n~~d~~G~TpLh~Aa~-~g~~~~v~~Ll~~gad--in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~  623 (823)
T PLN03192        547 AKLDPDIGDSKGRTPLHIAAS-KGYEDCVLVLLKHACN--VHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAG  623 (823)
T ss_pred             CCCCCCCCCCCCCCHHHHHHH-cChHHHHHHHHhcCCC--CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCc
Confidence            455555555667778999999 9999999999987554  7788999999998777666655554               


Q ss_pred             ----------------HHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCC-CCHHHHH
Q 043390           69 ----------------KLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNG-GTALLGA  131 (150)
Q Consensus        69 ----------------~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g-~tpl~~a  131 (150)
                                      .|+++|++     ++.+|..|+||||+|+..|+. +++++|++.|++ ++..|..| .||+.++
T Consensus       624 ~~L~~Aa~~g~~~~v~~Ll~~Gad-----in~~d~~G~TpLh~A~~~g~~-~iv~~Ll~~GAd-v~~~~~~g~~t~~~l~  696 (823)
T PLN03192        624 DLLCTAAKRNDLTAMKELLKQGLN-----VDSEDHQGATALQVAMAEDHV-DMVRLLIMNGAD-VDKANTDDDFSPTELR  696 (823)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHCCcH-HHHHHHHHcCCC-CCCCCCCCCCCHHHHH
Confidence                            45555655     688999999999999999996 999999999965 99999888 8998887


Q ss_pred             HHcC
Q 043390          132 AHNG  135 (150)
Q Consensus       132 ~~~g  135 (150)
                      ....
T Consensus       697 ~~~~  700 (823)
T PLN03192        697 ELLQ  700 (823)
T ss_pred             HHHH
Confidence            5543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.73  E-value=1.6e-16  Score=104.14  Aligned_cols=124  Identities=31%  Similarity=0.305  Sum_probs=110.5

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCC-----hHHHHHHHhhCC--CCcccccccCCC
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKK-----SDLVMKLLDELP--DQSLDKMTRQNK   87 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~-----~~~v~~ll~~~~--~~~~~~~~~~~~   87 (150)
                      ....++.++. .++...+..++..+.+  ++.++..|.||||+|+..++     .++++.|+..|+  +.    .+.+|.
T Consensus        73 ~~~~~~~~~~-~~~~~~~~~l~~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~----~~~~~~  145 (235)
T COG0666          73 GRLPLHSAAS-KGDDKIVKLLLASGAD--VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV----NNLRDE  145 (235)
T ss_pred             ccCHHHHHHH-cCcHHHHHHHHHcCCC--cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC----ccccCC
Confidence            3445888888 8999888888887655  58899999999999999999     999999999999  42    577899


Q ss_pred             CCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 043390           88 AGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKN  147 (150)
Q Consensus        88 ~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~  147 (150)
                      .|+||||+|+..|+. ++++.|++.++. ++.++..|.|+++.|+..++.++++.+++.+
T Consensus       146 ~g~tpl~~A~~~~~~-~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDA-DIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCch-HHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999997 999999999976 8899999999999999999999999998864

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.73  E-value=1.8e-16  Score=94.79  Aligned_cols=95  Identities=27%  Similarity=0.383  Sum_probs=87.3

Q ss_pred             cccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCC
Q 043390           47 FTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGT  126 (150)
Q Consensus        47 ~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~t  126 (150)
                      .+..|.||||.|+..++.+++++++..+..     .+.++..|.+|+|.|+..++. +++++|++.+.. ++..+..+.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~-----~~~~~~~g~~~l~~a~~~~~~-~~~~~ll~~~~~-~~~~~~~~~~   75 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD-----VNAKDNDGRTPLHLAAKNGHL-EIVKLLLEKGAD-VNARDKDGNT   75 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC-----CCccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCC-ccccCCCCCC
Confidence            467899999999999999999999999987     477899999999999999996 999999999964 7888899999


Q ss_pred             HHHHHHHcCCHHHHHHHHhccC
Q 043390          127 ALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus       127 pl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      |+|.|+..++.+++++|++++.
T Consensus        76 ~l~~a~~~~~~~~~~~L~~~~~   97 (126)
T cd00204          76 PLHLAARNGNLDVVKLLLKHGA   97 (126)
T ss_pred             HHHHHHHcCcHHHHHHHHHcCC
Confidence            9999999999999999999764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.73  E-value=3.4e-17  Score=90.38  Aligned_cols=103  Identities=14%  Similarity=0.088  Sum_probs=88.2

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHH
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHET   96 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a   96 (150)
                      ..+.+... +|..+.|++.+..+.+  ++ ....|++|||+|+-.|..+++++|+..|++     ++.+|..|-|||..|
T Consensus         4 ~~~~W~vk-NG~~DeVk~~v~~g~n--Vn-~~~ggR~plhyAAD~GQl~ilefli~iGA~-----i~~kDKygITPLLsA   74 (117)
T KOG4214|consen    4 MSVAWNVK-NGEIDEVKQSVNEGLN--VN-EIYGGRTPLHYAADYGQLSILEFLISIGAN-----IQDKDKYGITPLLSA   74 (117)
T ss_pred             hhHhhhhc-cCcHHHHHHHHHcccc--HH-HHhCCcccchHhhhcchHHHHHHHHHhccc-----cCCccccCCcHHHHH
Confidence            45778889 9999999999987533  22 233789999999999999999999999999     799999999999999


Q ss_pred             HHcCCcHHHHHHHHhhCCcccccccCCCCCHHHH
Q 043390           97 ASSSHALPVADKLFRKAPGLLGMRNNNGGTALLG  130 (150)
Q Consensus        97 ~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~  130 (150)
                      +..|+. +|+++|++.|++ ...+..+|.+.+..
T Consensus        75 vwEGH~-~cVklLL~~GAd-rt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   75 VWEGHR-DCVKLLLQNGAD-RTIHAPDGTALIEA  106 (117)
T ss_pred             HHHhhH-HHHHHHHHcCcc-cceeCCCchhHHhh
Confidence            999996 999999999965 77777888776544

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.72  E-value=8.7e-17  Score=121.90  Aligned_cols=126  Identities=19%  Similarity=0.129  Sum_probs=98.2

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHH-HHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLH-VAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTIL   93 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~-~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l   93 (150)
                      ....++.|+. .|+.+.++.+++.....+++..|..|+|||| .|+.+++.++++.|+..|.         .+..|.|||
T Consensus        17 ~~~~~l~A~~-~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~---------~~~~G~T~L   86 (743)
T TIGR00870        17 EEKAFLPAAE-RGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC---------RGAVGDTLL   86 (743)
T ss_pred             HHHHHHHHHH-cCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC---------CCCcChHHH
Confidence            3556999999 9999999999988555567888999999999 8888889999999999864         466899999


Q ss_pred             HHHHHcC--CcHHHHHHHHhhCCc-----cc----ccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           94 HETASSS--HALPVADKLFRKAPG-----LL----GMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        94 ~~a~~~g--~~~~~~~~Ll~~~~~-----~~----~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |.|+..+  ..+.++..+...+..     ..    ...+..|.||||+|+.+|+.+++++|+++|+++
T Consensus        87 h~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv  154 (743)
T TIGR00870        87 HAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV  154 (743)
T ss_pred             HHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            9999832  222344544444321     01    112346999999999999999999999999864

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.72  E-value=3.7e-17  Score=90.24  Aligned_cols=88  Identities=18%  Similarity=0.193  Sum_probs=79.4

Q ss_pred             HHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHH
Q 043390           54 VLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAH  133 (150)
Q Consensus        54 ~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~  133 (150)
                      .+.+++.+|.++-|+..+..|.+     ++..- .|++|||+|+-.|+. +++++|+..|++ ++.+|++|-|||.-|+.
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~n-----Vn~~~-ggR~plhyAAD~GQl-~ilefli~iGA~-i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLN-----VNEIY-GGRTPLHYAADYGQL-SILEFLISIGAN-IQDKDKYGITPLLSAVW   76 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcccc-----HHHHh-CCcccchHhhhcchH-HHHHHHHHhccc-cCCccccCCcHHHHHHH
Confidence            45788999999999999888866     44443 899999999999997 999999999976 99999999999999999


Q ss_pred             cCCHHHHHHHHhccCC
Q 043390          134 NGKIEIFNFLAGKNFR  149 (150)
Q Consensus       134 ~g~~~~~~~L~~~~~~  149 (150)
                      .||.+|+++|+++|+.
T Consensus        77 EGH~~cVklLL~~GAd   92 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGAD   92 (117)
T ss_pred             HhhHHHHHHHHHcCcc
Confidence            9999999999999985

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.72  E-value=2e-17  Score=120.37  Aligned_cols=121  Identities=26%  Similarity=0.196  Sum_probs=71.0

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHE   95 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~   95 (150)
                      .+.+|+|+. .|+...++.+++..  ..+...|..|..|||+|++.|+.++++.++..+..     .|..+..|.||||.
T Consensus        50 fTalhha~L-ng~~~is~llle~e--a~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~-----~na~~~e~~tplhl  121 (854)
T KOG0507|consen   50 FTLLHHAVL-NGQNQISKLLLDYE--ALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI-----LNAVNIENETPLHL  121 (854)
T ss_pred             hhHHHHHHh-cCchHHHHHHhcch--hhhhhhhccCcceEEehhhcCcchHHHHHHhcccC-----CCcccccCcCccch
Confidence            334666666 66666555555542  22444555566666666666666666666655533     45566666666666


Q ss_pred             HHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Q 043390           96 TASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGK  146 (150)
Q Consensus        96 a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~  146 (150)
                      |++.|+. +++.+|+..+++ +-.+|+.+.|+|.+|++-|..++++.|++.
T Consensus       122 aaqhgh~-dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  122 AAQHGHL-EVVFYLLKKNAD-PFIRNNSKETVLDLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             hhhhcch-HHHHHHHhcCCC-ccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence            6666664 666666666643 556666666666666666666666666544

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.70  E-value=6.9e-17  Score=122.46  Aligned_cols=128  Identities=20%  Similarity=0.136  Sum_probs=103.6

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccc------------cccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccc
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCV------------FTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDK   81 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~------------~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~   81 (150)
                      ...++||.|+. .|+.+.++.|++.+++.+...            ....|.+|||.|+..++.+++++|++.|++     
T Consensus       127 ~G~TpLhlAa~-~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-----  200 (743)
T TIGR00870       127 PGITALHLAAH-RQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-----  200 (743)
T ss_pred             CCCcHHHHHHH-hCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-----
Confidence            35678999999 999999999999876643211            123589999999999999999999999988     


Q ss_pred             cccCCCCCChHHHHHHHcCC--------cHHHHHHHHhhCCc--cc----ccccCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 043390           82 MTRQNKAGNTILHETASSSH--------ALPVADKLFRKAPG--LL----GMRNNNGGTALLGAAHNGKIEIFNFLAGKN  147 (150)
Q Consensus        82 ~~~~~~~g~t~l~~a~~~g~--------~~~~~~~Ll~~~~~--~~----~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~  147 (150)
                      ++.+|..|+||||+|+..+.        ...+.+++++.++.  ..    +..|..|.|||++|+..|+.+++++|++.+
T Consensus       201 in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       201 ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            68899999999999999861        11456666666532  12    567899999999999999999999999854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=9.8e-17  Score=112.99  Aligned_cols=118  Identities=20%  Similarity=0.205  Sum_probs=101.8

Q ss_pred             HHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 043390           19 LYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETAS   98 (150)
Q Consensus        19 l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~   98 (150)
                      |..|+. .|.++.|+..+....+  ....+..|-|+||-|+..||.++|+||+..|++     +|..|.+||||||.|+.
T Consensus       554 LLDaaL-eGEldlVq~~i~ev~D--pSqpNdEGITaLHNAiCaghyeIVkFLi~~gan-----VNa~DSdGWTPLHCAAS  625 (752)
T KOG0515|consen  554 LLDAAL-EGELDLVQRIIYEVTD--PSQPNDEGITALHNAICAGHYEIVKFLIEFGAN-----VNAADSDGWTPLHCAAS  625 (752)
T ss_pred             HHhhhh-cchHHHHHHHHHhhcC--CCCCCccchhHHhhhhhcchhHHHHHHHhcCCc-----ccCccCCCCchhhhhhh
Confidence            667787 9999999999887544  677899999999999999999999999999999     79999999999999999


Q ss_pred             cCCcHHHHHHHHhhCCcccccccCCCCCHHHHHH--HcCCHHHHHHHHh
Q 043390           99 SSHALPVADKLFRKAPGLLGMRNNNGGTALLGAA--HNGKIEIFNFLAG  145 (150)
Q Consensus        99 ~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~--~~g~~~~~~~L~~  145 (150)
                      -++. .+++.|++.|++..-..-.++.|+..-+-  +.|..+|.+||..
T Consensus       626 CNnv-~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  626 CNNV-PMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             cCch-HHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9997 99999999998744444456788877654  4688899999964

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.68  E-value=7.6e-16  Score=101.45  Aligned_cols=121  Identities=26%  Similarity=0.195  Sum_probs=107.5

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      ..++|+.+.- .++.+....||..-.+  .+.+|.+|.++|..|+..|+.++++.+++.|++.|    ..++..+.||||
T Consensus        12 ~~~~Lle~i~-Kndt~~a~~LLs~vr~--vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN----~~qhg~~YTpLm   84 (396)
T KOG1710|consen   12 PKSPLLEAID-KNDTEAALALLSTVRQ--VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVN----DKQHGTLYTPLM   84 (396)
T ss_pred             hhhHHHHHHc-cCcHHHHHHHHHHhhh--hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcC----cccccccccHHH
Confidence            3456999999 9999999999987333  78899999999999999999999999999999942    346778999999


Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHH
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLA  144 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~  144 (150)
                      +|+..|+. +++..|++.|+. ....|.-|+|+-.+|+--|+.+||..+.
T Consensus        85 FAALSGn~-dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   85 FAALSGNQ-DVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HHHHcCCc-hHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHh
Confidence            99999996 999999999976 8889999999999999999999998764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.68  E-value=3.2e-16  Score=114.43  Aligned_cols=124  Identities=18%  Similarity=0.069  Sum_probs=103.7

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHh-hCChHHHHHHHhhCCCCc------------------
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAY-TKKSDLVMKLLDELPDQS------------------   78 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~-~~~~~~v~~ll~~~~~~~------------------   78 (150)
                      .++.-+...|+.+.++.|+.++++  ++.++..+.+++|+|+. .++.+++++|+..|+++.                  
T Consensus        74 ~~~~~~s~n~~lElvk~LI~~GAd--vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~  151 (631)
T PHA02792         74 IFEYLCSDNIDIELLKLLISKGLE--INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAE  151 (631)
T ss_pred             HHHHHHHhcccHHHHHHHHHcCCC--cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhccccc
Confidence            354444338999999999998665  66777788999999965 699999999999998731                  


Q ss_pred             ---c----c------ccccCCCCCChHHHHHHHcC-------CcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcC--C
Q 043390           79 ---L----D------KMTRQNKAGNTILHETASSS-------HALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNG--K  136 (150)
Q Consensus        79 ---~----~------~~~~~~~~g~t~l~~a~~~g-------~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g--~  136 (150)
                         +    +      .++..|..|.||||+++.++       +. +++++|++.|+. ++.+|..|.||||+|+.+.  .
T Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~-~v~k~Li~~g~~-~~~~d~~g~t~l~~~~~~~~i~  229 (631)
T PHA02792        152 YYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSL-DVINYLISHEKE-MRYYTYREHTTLYYYVDKCDIK  229 (631)
T ss_pred             ccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCH-HHHHHHHhCCCC-cCccCCCCChHHHHHHHcccch
Confidence               1    0      23567778999999999998       75 999999999976 8889999999999999999  8


Q ss_pred             HHHHHHHHh
Q 043390          137 IEIFNFLAG  145 (150)
Q Consensus       137 ~~~~~~L~~  145 (150)
                      .|++++|++
T Consensus       230 ~ei~~~L~~  238 (631)
T PHA02792        230 REIFDALFD  238 (631)
T ss_pred             HHHHHHHHh
Confidence            899999986

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.68  E-value=3.5e-16  Score=110.01  Aligned_cols=123  Identities=24%  Similarity=0.288  Sum_probs=109.3

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETA   97 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~   97 (150)
                      .++.|+. .|+.+.+..++..+.+  .+..+.+|.|+||.+|...+.+||++++.+|++     ++..|..||||+|.|+
T Consensus        43 ~~l~A~~-~~d~~ev~~ll~~ga~--~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~-----Vn~~d~e~wtPlhaaa  114 (527)
T KOG0505|consen   43 VFLEACS-RGDLEEVRKLLNRGAS--PNLCNVDGLTALHQACIDDNLEMVKFLVENGAN-----VNAQDNEGWTPLHAAA  114 (527)
T ss_pred             HHHhccc-cccHHHHHHHhccCCC--ccccCCccchhHHHHHhcccHHHHHHHHHhcCC-----ccccccccCCcchhhc
Confidence            4778888 9999999999998755  578899999999999999999999999999999     8999999999999999


Q ss_pred             HcCCcHHHHHHHHhhCC----------------------------------------------------------ccccc
Q 043390           98 SSSHALPVADKLFRKAP----------------------------------------------------------GLLGM  119 (150)
Q Consensus        98 ~~g~~~~~~~~Ll~~~~----------------------------------------------------------~~~~~  119 (150)
                      .-|+. .++++|+..|+                                                          .+.+.
T Consensus       115 scg~~-~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~  193 (527)
T KOG0505|consen  115 SCGYL-NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDA  193 (527)
T ss_pred             ccccH-HHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccc
Confidence            99997 99999998851                                                          22445


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390          120 RNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       120 ~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ....|.|.||+|+.+|..++.++|++.|..
T Consensus       194 ~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~  223 (527)
T KOG0505|consen  194 RHARGATALHVAAANGYTEVAALLLQAGYS  223 (527)
T ss_pred             cccccchHHHHHHhhhHHHHHHHHHHhccC
Confidence            556689999999999999999999998865

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.67  E-value=3.4e-16  Score=80.53  Aligned_cols=54  Identities=33%  Similarity=0.499  Sum_probs=30.3

Q ss_pred             CChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHH
Q 043390           89 GNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLA  144 (150)
Q Consensus        89 g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~  144 (150)
                      |.||||+|+..|+. +++++|++.+.+ ++.+|.+|.||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~-~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNL-EIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-H-HHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCH-HHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45666666666664 666666666533 6666666666666666666666666654

...

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.66  E-value=3.2e-16  Score=114.20  Aligned_cols=107  Identities=22%  Similarity=0.188  Sum_probs=95.9

Q ss_pred             HHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCc
Q 043390           36 CRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPG  115 (150)
Q Consensus        36 l~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~  115 (150)
                      +........+..|.+|.|+||.||.+|+..+++.|+++.+-     +...|..|.+|||+|+..|+. ++++.++..+. 
T Consensus        34 ~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~-----ldl~d~kg~~plhlaaw~g~~-e~vkmll~q~d-  106 (854)
T KOG0507|consen   34 FFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL-----LDLCDTKGILPLHLAAWNGNL-EIVKMLLLQTD-  106 (854)
T ss_pred             CCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh-----hhhhhccCcceEEehhhcCcc-hHHHHHHhccc-
Confidence            33344455778899999999999999999999999998776     677889999999999999997 99999999995 


Q ss_pred             ccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390          116 LLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       116 ~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      .+++.+..|.||||.|+.+||.+++.+|+++|+.
T Consensus       107 ~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad  140 (854)
T KOG0507|consen  107 ILNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD  140 (854)
T ss_pred             CCCcccccCcCccchhhhhcchHHHHHHHhcCCC
Confidence            4999999999999999999999999999999874

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.65  E-value=6.4e-16  Score=79.49  Aligned_cols=54  Identities=30%  Similarity=0.371  Sum_probs=44.9

Q ss_pred             CCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHH
Q 043390           51 DDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLF  110 (150)
Q Consensus        51 g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll  110 (150)
                      |+||||+|+..|+.+++++|++.|.+     ++.+|.+|.||||+|+..|+. +++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-----in~~d~~g~t~lh~A~~~g~~-~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-----INAQDEDGRTPLHYAAKNGNI-DIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-----TT-B-TTS--HHHHHHHTT-H-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHccCH-HHHHHHC
Confidence            68999999999999999999999988     688899999999999999996 9999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.64  E-value=2.6e-15  Score=112.32  Aligned_cols=105  Identities=22%  Similarity=0.125  Sum_probs=88.3

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETA   97 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~   97 (150)
                      .|+.++. .|+.+.++.|+..+.+  ++..|..|+||||+|+..|+.+++++|+..|++     ++.+|..|.||||+|+
T Consensus        85 ~L~~aa~-~G~~~~vk~LL~~Gad--in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-----vn~~d~~G~TpLh~A~  156 (664)
T PTZ00322         85 ELCQLAA-SGDAVGARILLTGGAD--PNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-----PTLLDKDGKTPLELAE  156 (664)
T ss_pred             HHHHHHH-cCCHHHHHHHHHCCCC--CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHH
Confidence            4788888 9999999888887554  677899999999999999999999999999988     6889999999999999


Q ss_pred             HcCCcHHHHHHHHhh-------CCcccccccCCCCCHHHHHH
Q 043390           98 SSSHALPVADKLFRK-------APGLLGMRNNNGGTALLGAA  132 (150)
Q Consensus        98 ~~g~~~~~~~~Ll~~-------~~~~~~~~~~~g~tpl~~a~  132 (150)
                      ..|+. +++++|+..       ++. .+..+..|.+|+..+.
T Consensus       157 ~~g~~-~iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        157 ENGFR-EVVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HCCcH-HHHHHHHhCCCcccccCCC-CCccccCCCCccchhh
Confidence            99996 999999988       543 6677777777765443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.64  E-value=2e-15  Score=112.88  Aligned_cols=86  Identities=23%  Similarity=0.205  Sum_probs=81.5

Q ss_pred             HHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHH
Q 043390           54 VLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAH  133 (150)
Q Consensus        54 ~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~  133 (150)
                      .|+.|+..|+.+.++.|+..|++     ++.+|..|+||||+|+..|+. +++++|++.|++ ++.+|..|.||||+|+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad-----in~~d~~G~TpLh~Aa~~g~~-eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD-----PNCRDYDGRTPLHIACANGHV-QVVRVLLEFGAD-PTLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-----CCCcCCCCCcHHHHHHHCCCH-HHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence            48899999999999999999998     688999999999999999996 999999999965 99999999999999999


Q ss_pred             cCCHHHHHHHHhc
Q 043390          134 NGKIEIFNFLAGK  146 (150)
Q Consensus       134 ~g~~~~~~~L~~~  146 (150)
                      .|+.+++++|+++
T Consensus       158 ~g~~~iv~~Ll~~  170 (664)
T PTZ00322        158 NGFREVVQLLSRH  170 (664)
T ss_pred             CCcHHHHHHHHhC
Confidence            9999999999988

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.63  E-value=4.7e-16  Score=80.43  Aligned_cols=48  Identities=31%  Similarity=0.360  Sum_probs=22.2

Q ss_pred             cccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHH
Q 043390           82 MTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGA  131 (150)
Q Consensus        82 ~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a  131 (150)
                      ++.+|..|+||||+|+..|+. +++++|+..++ +++.+|..|+|||++|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~-~~v~~Ll~~g~-d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHS-EVVRLLLQNGA-DPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-H-HHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcH-HHHHHHHHCcC-CCCCCcCCCCCHHHhC
Confidence            566666666666666666664 66666665553 3666666666666665

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.62  E-value=5.2e-15  Score=108.68  Aligned_cols=130  Identities=18%  Similarity=0.153  Sum_probs=86.4

Q ss_pred             HHHHHHH--hhcCHHHHHHHHHhCCCCCccc---cccCCCcHHHHHHhhCChHHHHHHHhhCCCCcc----ccccc----
Q 043390           18 ELYNALM--IKQDEQKVIELCRKVPDHSLCV---FTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSL----DKMTR----   84 (150)
Q Consensus        18 ~l~~a~~--~~~~~~~~~~ll~~~~~~~~~~---~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~----~~~~~----   84 (150)
                      .||.|+.  -.+.-+.++.|++..|....+.   -...|.||||+|+.+.+.++|..|+..|++.+-    ..+..    
T Consensus       146 ~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk  225 (782)
T KOG3676|consen  146 LLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQK  225 (782)
T ss_pred             HHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCccccc
Confidence            3555544  0233345666666655532222   244678888888888888888888888887421    01111    


Q ss_pred             ----------CCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           85 ----------QNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        85 ----------~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                                .-+.|..||.+|++.++. +++++|++.+++ ++.+|.+|+|.||..+.+...++.+++++.|++
T Consensus       226 ~~rk~T~Y~G~~YfGEyPLSfAAC~nq~-eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  226 ASRKSTNYTGYFYFGEYPLSFAACTNQP-EIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN  298 (782)
T ss_pred             ccccccCCcceeeeccCchHHHHHcCCH-HHHHHHHhcCCC-CCccccCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence                      133577888888888884 888888887754 888888888888888888777888888877765

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.61  E-value=1.1e-15  Score=79.13  Aligned_cols=55  Identities=29%  Similarity=0.276  Sum_probs=33.0

Q ss_pred             HHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHH
Q 043390           36 CRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHET   96 (150)
Q Consensus        36 l~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a   96 (150)
                      ++.+ ..+++..|..|.||||+|+..|+.+++++|+..|++     ++.+|..|+||+|+|
T Consensus         2 L~~~-~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-----~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHG-PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-----PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT-------TT---TTS--HHHH-
T ss_pred             CccC-cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-----CCCCcCCCCCHHHhC
Confidence            4444 355788999999999999999999999999999998     689999999999987

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.61  E-value=1.4e-14  Score=106.43  Aligned_cols=128  Identities=27%  Similarity=0.246  Sum_probs=109.0

Q ss_pred             hhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCcc------cccc---------------CCCcHHHHHHhhCChHHHHHH
Q 043390           12 KNKINSELYNALMIKQDEQKVIELCRKVPDHSLC------VFTI---------------YDDTVLHVAAYTKKSDLVMKL   70 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~------~~~~---------------~g~~~L~~a~~~~~~~~v~~l   70 (150)
                      .....+.||.|.. +.+.+.|+.|++.+++....      .++.               -|..||.+|+..++.+++++|
T Consensus       181 eY~GqSaLHiAIv-~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  181 EYYGQSALHIAIV-NRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             hhcCcchHHHHHH-hccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            3455677999999 99999999999987662111      1111               267899999999999999999


Q ss_pred             HhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCc-ccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Q 043390           71 LDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPG-LLGMRNNNGGTALLGAAHNGKIEIFNFLAGK  146 (150)
Q Consensus        71 l~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~-~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~  146 (150)
                      +++|++     ++.+|..|||.||.++..-.. ++-+++++.|+. ....+|+.|-|||.+|++.|..++++.++++
T Consensus       260 l~~gAd-----~~aqDS~GNTVLH~lVi~~~~-~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  260 LAHGAD-----PNAQDSNGNTVLHMLVIHFVT-EMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HhcCCC-----CCccccCCChHHHHHHHHHHH-HHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999     699999999999999998764 999999999964 2668899999999999999999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=1.5e-14  Score=102.21  Aligned_cols=87  Identities=24%  Similarity=0.300  Sum_probs=79.5

Q ss_pred             HHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHc
Q 043390           55 LHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHN  134 (150)
Q Consensus        55 L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~  134 (150)
                      |--|+..|-.++|+..+..-.+     ....+..|.|+||.|++.|+. ++|+||++.|++ +|..|.+||||||.|+.+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D-----pSqpNdEGITaLHNAiCaghy-eIVkFLi~~gan-VNa~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD-----PSQPNDEGITALHNAICAGHY-EIVKFLIEFGAN-VNAADSDGWTPLHCAASC  626 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC-----CCCCCccchhHHhhhhhcchh-HHHHHHHhcCCc-ccCccCCCCchhhhhhhc
Confidence            3447788999999999988777     467889999999999999996 999999999976 999999999999999999


Q ss_pred             CCHHHHHHHHhccC
Q 043390          135 GKIEIFNFLAGKNF  148 (150)
Q Consensus       135 g~~~~~~~L~~~~~  148 (150)
                      ++..+.+.|++.|+
T Consensus       627 Nnv~~ckqLVe~Ga  640 (752)
T KOG0515|consen  627 NNVPMCKQLVESGA  640 (752)
T ss_pred             CchHHHHHHHhccc
Confidence            99999999999986

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.57  E-value=1.3e-13  Score=90.21  Aligned_cols=100  Identities=27%  Similarity=0.326  Sum_probs=91.2

Q ss_pred             ccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCC-----cHHHHHHHHhhCC--cc
Q 043390           44 LCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSH-----ALPVADKLFRKAP--GL  116 (150)
Q Consensus        44 ~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~-----~~~~~~~Ll~~~~--~~  116 (150)
                      ....+..+.+++|.++..+..+++.+++..+.+     ++.++..|.||+|+|+..++     . +++++|++.++  ..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~-~~~~~ll~~g~~~~~  139 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGAD-----VNAKDADGDTPLHLAALNGNPPEGNI-EVAKLLLEAGADLDV  139 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCC-----cccccCCCCcHHHHHHhcCCcccchH-HHHHHHHHcCCCCCC
Confidence            334566789999999999999999999999998     58999999999999999999     7 99999999998  55


Q ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390          117 LGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       117 ~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      .+.+|..|.||||+|+..|+.+++++|++.|+.
T Consensus       140 ~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~  172 (235)
T COG0666         140 NNLRDEDGNTPLHWAALNGDADIVELLLEAGAD  172 (235)
T ss_pred             ccccCCCCCchhHHHHHcCchHHHHHHHhcCCC
Confidence            788899999999999999999999999998764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.37  E-value=7.9e-13  Score=98.00  Aligned_cols=101  Identities=22%  Similarity=0.263  Sum_probs=86.3

Q ss_pred             hcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCC-CCChHHHHHHHcCCcHH
Q 043390           26 KQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNK-AGNTILHETASSSHALP  104 (150)
Q Consensus        26 ~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~-~g~t~l~~a~~~g~~~~  104 (150)
                      .+....++.++.+......+++|..|+++||+++..+...++++|+++|.+     +..+|+ .|+||||.|...|+. +
T Consensus        27 Ks~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-----v~vqD~ESG~taLHRaiyyG~i-d  100 (1267)
T KOG0783|consen   27 KSEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-----VFVQDEESGYTALHRAIYYGNI-D  100 (1267)
T ss_pred             cCChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce-----eeeccccccchHhhHhhhhchH-H
Confidence            333335556666544444778999999999999999999999999999998     667776 799999999999997 9


Q ss_pred             HHHHHHhhCCcccccccCCCCCHHHHHHH
Q 043390          105 VADKLFRKAPGLLGMRNNNGGTALLGAAH  133 (150)
Q Consensus       105 ~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~  133 (150)
                      |+-.|++.|.. ...+|..|.+||...++
T Consensus       101 ca~lLL~~g~S-L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  101 CASLLLSKGRS-LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHHHHHhcCCc-eEEecccCCCHHHHHhh
Confidence            99999999976 89999999999998776

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.35  E-value=1.6e-12  Score=91.04  Aligned_cols=91  Identities=19%  Similarity=0.125  Sum_probs=84.2

Q ss_pred             CCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHH
Q 043390           50 YDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALL  129 (150)
Q Consensus        50 ~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~  129 (150)
                      ++...+++|++.|.+..++.+.-.|.+     ++.+|++..|+||+|+..|+. +++++|++....+++.+|.+|+|||.
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D-----~~~~DyD~RTaLHvAAaEG~v-~v~kfl~~~~kv~~~~kDRw~rtPlD  578 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMD-----LETKDYDDRTALHVAAAEGHV-EVVKFLLNACKVDPDPKDRWGRTPLD  578 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhccc-----ccccccccchhheeecccCce-eHHHHHHHHHcCCCChhhccCCCcch
Confidence            345679999999999999999888888     799999999999999999997 99999999998889999999999999


Q ss_pred             HHHHcCCHHHHHHHHhc
Q 043390          130 GAAHNGKIEIFNFLAGK  146 (150)
Q Consensus       130 ~a~~~g~~~~~~~L~~~  146 (150)
                      -|..-+|.+++++|.+.
T Consensus       579 dA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  579 DAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             HhHhcCcHHHHHHHHHH
Confidence            99999999999999764

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.34  E-value=1.1e-11  Score=88.91  Aligned_cols=124  Identities=23%  Similarity=0.318  Sum_probs=107.5

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      ..+.+..++. .+++-.+.+....+.+  +-..+.+..+.||+|+.-|+-++|++++++|+..   .+...|..|.|+||
T Consensus       866 iseeil~av~-~~D~~klqE~h~~gg~--ll~~~~~~~sllh~a~~tg~~eivkyildh~p~e---lld~~de~get~lh  939 (1004)
T KOG0782|consen  866 ISEEILRAVL-SSDLMKLQETHLNGGS--LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE---LLDMADETGETALH  939 (1004)
T ss_pred             ccHHHHHHHH-hccHHHHHHHHhcCCc--eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHH---HHHHHhhhhhHHHH
Confidence            3456889999 9998877776666444  6677888899999999999999999999999874   46778899999999


Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGK  146 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~  146 (150)
                      -|+..++. .++.+|++.|+. ....|..|.||-..|.+.|..+++-||-.+
T Consensus       940 kaa~~~~r-~vc~~lvdagas-l~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  940 KAACQRNR-AVCQLLVDAGAS-LRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHhcch-HHHHHHHhcchh-heecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999996 999999999976 888999999999999999999999988654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.28  E-value=3.1e-12  Score=97.60  Aligned_cols=125  Identities=20%  Similarity=0.155  Sum_probs=79.1

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      ++..|-.++. .|+.+.+..++.++..  +..+|+.|.+||.+|+..||..+|+.|+.+.++.    --..|+.+.|+|.
T Consensus       757 ~~t~LT~aca-ggh~e~vellv~rgan--iehrdkkgf~plImaatagh~tvV~~llk~ha~v----eaQsdrtkdt~lS  829 (2131)
T KOG4369|consen  757 IKTNLTSACA-GGHREEVELLVVRGAN--IEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV----EAQSDRTKDTMLS  829 (2131)
T ss_pred             cccccccccc-CccHHHHHHHHHhccc--ccccccccchhhhhhcccCchHHHHHHHhhhhhh----hhhcccccCceEE
Confidence            4445667777 7777777777776544  5567777777777777777777777777766652    1234555666666


Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      +|+..|.. +++++|+..|++ -..++-.+-|||.+|..-|+.++++.|+..|.
T Consensus       830 lacsggr~-~vvelLl~~gan-kehrnvsDytPlsla~Sggy~~iI~~llS~Gs  881 (2131)
T KOG4369|consen  830 LACSGGRT-RVVELLLNAGAN-KEHRNVSDYTPLSLARSGGYTKIIHALLSSGS  881 (2131)
T ss_pred             EecCCCcc-hHHHHHHHhhcc-ccccchhhcCchhhhcCcchHHHHHHHhhccc
Confidence            66666664 666666666644 44555555566666666666666666665554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.23  E-value=7.6e-11  Score=83.18  Aligned_cols=94  Identities=22%  Similarity=0.153  Sum_probs=80.4

Q ss_pred             ccccCCCc------HHHHHHhhCChHHHHHHHhhCCCCcccccccCCC-CCChHHHHHHHcCCcHHHHHHHHhhCCcccc
Q 043390           46 VFTIYDDT------VLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNK-AGNTILHETASSSHALPVADKLFRKAPGLLG  118 (150)
Q Consensus        46 ~~~~~g~~------~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~-~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~  118 (150)
                      .+|.+|.+      -||-+++-++.+..-.|+..|+++     |..+. .|.||||.|+..|+. ..+++|+-+|++ ++
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~-----N~~hpekg~TpLHvAAk~Gq~-~Q~ElL~vYGAD-~~  194 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQA-----NFFHPEKGNTPLHVAAKAGQI-LQAELLAVYGAD-PG  194 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHccccc-----CCCCcccCCchhHHHHhccch-hhhhHHhhccCC-CC
Confidence            45666544      488899999999998999999994     55444 699999999999997 999999999965 99


Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHhc
Q 043390          119 MRNNNGGTALLGAAHNGKIEIFNFLAGK  146 (150)
Q Consensus       119 ~~~~~g~tpl~~a~~~g~~~~~~~L~~~  146 (150)
                      ..|.+|.||+.+|...||.++.+.|++.
T Consensus       195 a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  195 AQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            9999999999999999999999988764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.21  E-value=1.6e-11  Score=93.93  Aligned_cols=126  Identities=19%  Similarity=0.128  Sum_probs=108.4

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHE   95 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~   95 (150)
                      ..++..++- .|+...|..++....+.+ ...|+.+.|+|.+||..|+.++|+.|+..|++     -..++....|||.+
T Consensus       791 f~plImaat-agh~tvV~~llk~ha~ve-aQsdrtkdt~lSlacsggr~~vvelLl~~gan-----kehrnvsDytPlsl  863 (2131)
T KOG4369|consen  791 FVPLIMAAT-AGHITVVQDLLKAHADVE-AQSDRTKDTMLSLACSGGRTRVVELLLNAGAN-----KEHRNVSDYTPLSL  863 (2131)
T ss_pred             chhhhhhcc-cCchHHHHHHHhhhhhhh-hhcccccCceEEEecCCCcchHHHHHHHhhcc-----ccccchhhcCchhh
Confidence            345777777 899999988888766643 25689999999999999999999999999998     47889999999999


Q ss_pred             HHHcCCcHHHHHHHHhhCCccccccc--CCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           96 TASSSHALPVADKLFRKAPGLLGMRN--NNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        96 a~~~g~~~~~~~~Ll~~~~~~~~~~~--~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |...|.. ++++.|+..|.. ++.+.  ..|-+||++|..+||.+.++.|++.|-+|
T Consensus       864 a~Sggy~-~iI~~llS~Gse-InSrtgSklgisPLmlatmngh~~at~~ll~~gsdi  918 (2131)
T KOG4369|consen  864 ARSGGYT-KIIHALLSSGSE-INSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDI  918 (2131)
T ss_pred             hcCcchH-HHHHHHhhcccc-cccccccccCcchhhhhhhccccHHHHHHhcccchh
Confidence            9999996 999999999965 66554  56899999999999999999999988654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.16  E-value=3.1e-10  Score=75.41  Aligned_cols=91  Identities=16%  Similarity=0.251  Sum_probs=78.6

Q ss_pred             CcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccc-cCCCCCHHHH
Q 043390           52 DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMR-NNNGGTALLG  130 (150)
Q Consensus        52 ~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~-~~~g~tpl~~  130 (150)
                      .++|..+.-.+..+-...|+..-..     ++.+|..|.+||..|+..|+. ++++.|++.|++ +|.. +..+-||||.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~-----vn~~D~sGMs~LahAaykGnl-~~v~lll~~gaD-vN~~qhg~~YTpLmF   85 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQ-----VNQRDPSGMSVLAHAAYKGNL-TLVELLLELGAD-VNDKQHGTLYTPLMF   85 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhh-----hhccCCCcccHHHHHHhcCcH-HHHHHHHHhCCC-cCcccccccccHHHH
Confidence            5688888888888877777776444     789999999999999999997 999999999976 6544 4457899999


Q ss_pred             HHHcCCHHHHHHHHhccCC
Q 043390          131 AAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       131 a~~~g~~~~~~~L~~~~~~  149 (150)
                      |+-+|+.++..+|++.|++
T Consensus        86 AALSGn~dvcrllldaGa~  104 (396)
T KOG1710|consen   86 AALSGNQDVCRLLLDAGAR  104 (396)
T ss_pred             HHHcCCchHHHHHHhccCc
Confidence            9999999999999999987

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.15  E-value=2.3e-10  Score=82.09  Aligned_cols=94  Identities=20%  Similarity=0.133  Sum_probs=78.5

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCcc--ccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCCh
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLC--VFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNT   91 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~--~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t   91 (150)
                      .+.+.|..|.. ..|+..+.-||.++.....+  ..+.+|+|+||+||+.|++.+.++|+=+|++     +..+|..|+|
T Consensus       623 ~lgqqLl~A~~-~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-----v~~rda~g~t  696 (749)
T KOG0705|consen  623 PLGQQLLRAVA-AEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-----VMARDAHGRT  696 (749)
T ss_pred             chHHHHHHHHH-HHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-----ceecccCCch
Confidence            34556888888 88888888888886654433  3477789999999999999999999999988     6889999999


Q ss_pred             HHHHHHHcCCcHHHHHHHHhhCC
Q 043390           92 ILHETASSSHALPVADKLFRKAP  114 (150)
Q Consensus        92 ~l~~a~~~g~~~~~~~~Ll~~~~  114 (150)
                      +|.+|.+.|.- +|+..|+..|+
T Consensus       697 ~l~yar~a~sq-ec~d~llq~gc  718 (749)
T KOG0705|consen  697 ALFYARQAGSQ-ECIDVLLQYGC  718 (749)
T ss_pred             hhhhHhhcccH-HHHHHHHHcCC
Confidence            99999999995 99999999985

>PF13606 Ank_3: Ankyrin repeat

Probab=99.10  E-value=1.8e-10  Score=51.50  Aligned_cols=27  Identities=44%  Similarity=0.557  Sum_probs=20.9

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390          123 NGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       123 ~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      +|+||||+|++.|+.+++++|+++|+.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            477888888888888888888877765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.09  E-value=9.3e-10  Score=77.84  Aligned_cols=93  Identities=17%  Similarity=0.143  Sum_probs=79.8

Q ss_pred             hhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCCh
Q 043390           12 KNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNT   91 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t   91 (150)
                      ...+.+.||..++ .|+.+....||..+++.++ .....|.||||.|++.|..--+++|+-+|++     ++..|..|.|
T Consensus       130 ~~~LsrQLhasvR-t~nlet~LRll~lGA~~N~-~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-----~~a~d~~Gmt  202 (669)
T KOG0818|consen  130 AKDLSKQLHSSVR-TGNLETCLRLLSLGAQANF-FHPEKGNTPLHVAAKAGQILQAELLAVYGAD-----PGAQDSSGMT  202 (669)
T ss_pred             HHHHHHHHHHHhh-cccHHHHHHHHHcccccCC-CCcccCCchhHHHHhccchhhhhHHhhccCC-----CCCCCCCCCc
Confidence            3556677999999 9999999999999877433 3345689999999999999999999999999     5899999999


Q ss_pred             HHHHHHHcCCcHHHHHHHHhh
Q 043390           92 ILHETASSSHALPVADKLFRK  112 (150)
Q Consensus        92 ~l~~a~~~g~~~~~~~~Ll~~  112 (150)
                      |+.+|...|+. ++.+.|++.
T Consensus       203 P~~~AR~~gH~-~laeRl~e~  222 (669)
T KOG0818|consen  203 PVDYARQGGHH-ELAERLVEI  222 (669)
T ss_pred             HHHHHHhcCch-HHHHHHHHH
Confidence            99999999996 887777654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.06  E-value=1.3e-09  Score=81.24  Aligned_cols=122  Identities=17%  Similarity=0.092  Sum_probs=99.5

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCC--CCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPD--HSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~--~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~   92 (150)
                      ....+..|+. .|+...|+++++....  .+.+..|.-|+++|+.|..+.+.+++++|++....     .       ..+
T Consensus        25 ~e~~fL~a~E-~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~-----~-------gdA   91 (822)
T KOG3609|consen   25 GEKGFLLAHE-NGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE-----E-------GDA   91 (822)
T ss_pred             hhHHHHHHHH-cCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc-----c-------chH
Confidence            3445778888 9999999999987555  66778899999999999999999999999998544     1       348


Q ss_pred             HHHHHHcCCcHHHHHHHHhhCCcc---------cccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           93 LHETASSSHALPVADKLFRKAPGL---------LGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        93 l~~a~~~g~~~~~~~~Ll~~~~~~---------~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |.+|+..|.. ++++.++......         ....-..+-||+.+|+.++++||+++|+++|+.+
T Consensus        92 LL~aI~~~~v-~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   92 LLLAIAVGSV-PLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHH-HHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            8899999997 9999998764211         1123345779999999999999999999999864

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.06  E-value=2.9e-10  Score=79.98  Aligned_cols=88  Identities=23%  Similarity=0.173  Sum_probs=78.0

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETA   97 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~   97 (150)
                      .+..|++ .|++..++++...+.+  +..+|.+.+|+||.|+..|+.+++++|+.....    +...+|++|+|||.-|.
T Consensus       509 ~~~~aa~-~GD~~alrRf~l~g~D--~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv----~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  509 NVMYAAK-NGDLSALRRFALQGMD--LETKDYDDRTALHVAAAEGHVEVVKFLLNACKV----DPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             hhhhhhh-cCCHHHHHHHHHhccc--ccccccccchhheeecccCceeHHHHHHHHHcC----CCChhhccCCCcchHhH
Confidence            4888999 9999999999988544  788999999999999999999999999987654    25789999999999999


Q ss_pred             HcCCcHHHHHHHHhhC
Q 043390           98 SSSHALPVADKLFRKA  113 (150)
Q Consensus        98 ~~g~~~~~~~~Ll~~~  113 (150)
                      ..++. +++++|-+.-
T Consensus       582 ~F~h~-~v~k~L~~~~  596 (622)
T KOG0506|consen  582 HFKHK-EVVKLLEEAQ  596 (622)
T ss_pred             hcCcH-HHHHHHHHHh
Confidence            99996 9999887663

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.05  E-value=8.8e-10  Score=78.37  Aligned_cols=88  Identities=19%  Similarity=0.169  Sum_probs=51.6

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETA   97 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~   97 (150)
                      ++|.++. ..+.+...+.+.......++..|..|.||||.|+..|+...++.|+..|++     +..+|..|++|||-|+
T Consensus        23 ~lh~~~~-~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-----v~~kN~~gWs~L~EAv   96 (560)
T KOG0522|consen   23 PLHWAVV-TTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-----VSIKNNEGWSPLHEAV   96 (560)
T ss_pred             ccchhhh-ccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-----ccccccccccHHHHHH
Confidence            3555555 555555544433334444555666666666666666666666666666665     4566666666666666


Q ss_pred             HcCCcHHHHHHHHhh
Q 043390           98 SSSHALPVADKLFRK  112 (150)
Q Consensus        98 ~~g~~~~~~~~Ll~~  112 (150)
                      ..|+- .++..++..
T Consensus        97 ~~g~~-q~i~~vlr~  110 (560)
T KOG0522|consen   97 STGNE-QIITEVLRH  110 (560)
T ss_pred             HcCCH-HHHHHHHHH
Confidence            66663 544444433

>PF13606 Ank_3: Ankyrin repeat

Probab=98.99  E-value=9.1e-10  Score=49.16  Aligned_cols=27  Identities=33%  Similarity=0.394  Sum_probs=19.5

Q ss_pred             CCCcHHHHHHhhCChHHHHHHHhhCCC
Q 043390           50 YDDTVLHVAAYTKKSDLVMKLLDELPD   76 (150)
Q Consensus        50 ~g~~~L~~a~~~~~~~~v~~ll~~~~~   76 (150)
                      +|+||||+||+.|+.+++++|+++|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            467777777777777777777777766

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.98  E-value=2.8e-09  Score=75.89  Aligned_cols=88  Identities=25%  Similarity=0.283  Sum_probs=72.2

Q ss_pred             cHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHH
Q 043390           53 TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAA  132 (150)
Q Consensus        53 ~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~  132 (150)
                      .|+|+++.....+.+...+......   .+..+|..|+||||+|+..|+. +.++.|+..++. +..+|+.|++|||-|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~---~id~~D~~g~TpLhlAV~Lg~~-~~a~~Ll~a~Ad-v~~kN~~gWs~L~EAv   96 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSL---VIDRRDPPGRTPLHLAVRLGHV-EAARILLSAGAD-VSIKNNEGWSPLHEAV   96 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhc---eeccccCCCCccHHHHHHhcCH-HHHHHHHhcCCC-ccccccccccHHHHHH
Confidence            4699999888876665533322211   2788999999999999999997 999999999976 9999999999999999


Q ss_pred             HcCCHHHHHHHHh
Q 043390          133 HNGKIEIFNFLAG  145 (150)
Q Consensus       133 ~~g~~~~~~~L~~  145 (150)
                      ..|+.+++..++.
T Consensus        97 ~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   97 STGNEQIITEVLR  109 (560)
T ss_pred             HcCCHHHHHHHHH
Confidence            9999988766653

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.97  E-value=1.3e-09  Score=49.94  Aligned_cols=24  Identities=33%  Similarity=0.529  Sum_probs=10.6

Q ss_pred             CChHHHHHHHcCCcHHHHHHHHhhC
Q 043390           89 GNTILHETASSSHALPVADKLFRKA  113 (150)
Q Consensus        89 g~t~l~~a~~~g~~~~~~~~Ll~~~  113 (150)
                      |+||||+|+..|+. +++++|++.|
T Consensus         2 G~TpLh~A~~~~~~-~~v~~Ll~~g   25 (33)
T PF00023_consen    2 GNTPLHYAAQRGHP-DIVKLLLKHG   25 (33)
T ss_dssp             SBBHHHHHHHTTCH-HHHHHHHHTT
T ss_pred             cccHHHHHHHHHHH-HHHHHHHHCc
Confidence            34444444444443 4444444444

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.92  E-value=3.2e-09  Score=48.59  Aligned_cols=28  Identities=36%  Similarity=0.322  Sum_probs=26.3

Q ss_pred             CCCcHHHHHHhhCChHHHHHHHhhCCCC
Q 043390           50 YDDTVLHVAAYTKKSDLVMKLLDELPDQ   77 (150)
Q Consensus        50 ~g~~~L~~a~~~~~~~~v~~ll~~~~~~   77 (150)
                      +|+||||+|+..++.+++++|++.|+++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            5899999999999999999999999983

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.91  E-value=7.5e-09  Score=74.59  Aligned_cols=91  Identities=23%  Similarity=0.199  Sum_probs=74.6

Q ss_pred             HHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHc
Q 043390           55 LHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHN  134 (150)
Q Consensus        55 L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~  134 (150)
                      |--|+....+..+-.|+.+|..... +-..-+.+|.|+||+|+..|++ .+.++|+=+|. ++..+|..|.|+|.+|.+.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~-~~t~~~~~grt~LHLa~~~gnV-vl~QLLiWyg~-dv~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEV-NETCGEGDGRTALHLAARKGNV-VLAQLLIWYGV-DVMARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhh-hccccCCCCcchhhhhhhhcch-hHHHHHHHhCc-cceecccCCchhhhhHhhc
Confidence            5556777777788889998865311 1123455789999999999997 99999998885 4999999999999999999


Q ss_pred             CCHHHHHHHHhccC
Q 043390          135 GKIEIFNFLAGKNF  148 (150)
Q Consensus       135 g~~~~~~~L~~~~~  148 (150)
                      |..+|+.+|+.+|-
T Consensus       705 ~sqec~d~llq~gc  718 (749)
T KOG0705|consen  705 GSQECIDVLLQYGC  718 (749)
T ss_pred             ccHHHHHHHHHcCC
Confidence            99999999999874

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.77  E-value=4.2e-09  Score=78.85  Aligned_cols=67  Identities=24%  Similarity=0.253  Sum_probs=61.4

Q ss_pred             cccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccC-CCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           82 MTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNN-NGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        82 ~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~-~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      .+.+|..|+|+||+++..+.. +++++|+..|. ++..+|. .|+||||-|+..|+.+|+-.|+++|+.|
T Consensus        45 anikD~~GR~alH~~~S~~k~-~~l~wLlqhGi-dv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL  112 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKN-SFLRWLLQHGI-DVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL  112 (1267)
T ss_pred             hhHHHhhccceeeeeeccchh-HHHHHHHhcCc-eeeeccccccchHhhHhhhhchHHHHHHHHhcCCce
Confidence            688999999999999999995 99999999985 4888886 5999999999999999999999999865

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.70  E-value=2.8e-08  Score=75.59  Aligned_cols=90  Identities=26%  Similarity=0.279  Sum_probs=79.7

Q ss_pred             cccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCC
Q 043390           47 FTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGT  126 (150)
Q Consensus        47 ~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~t  126 (150)
                      .-..|.++||.|+..+...++++|+++|++     ++..|..|++|+|.+...|+. ..+..++++++. .++.+..|.+
T Consensus       652 ~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~-----vn~~d~~g~~plh~~~~~g~~-~~~~~ll~~~a~-~~a~~~~~~~  724 (785)
T KOG0521|consen  652 VLCIGCSLLHVAVGTGDSGAVELLLQNGAD-----VNALDSKGRTPLHHATASGHT-SIACLLLKRGAD-PNAFDPDGKL  724 (785)
T ss_pred             hhhcccchhhhhhccchHHHHHHHHhcCCc-----chhhhccCCCcchhhhhhccc-chhhhhcccccc-ccccCccCcc
Confidence            455679999999999999999999999999     799999999999999999997 999999998865 9999999999


Q ss_pred             HHHHHHHcCCHHHHHHH
Q 043390          127 ALLGAAHNGKIEIFNFL  143 (150)
Q Consensus       127 pl~~a~~~g~~~~~~~L  143 (150)
                      |+++|....+.+++-++
T Consensus       725 ~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  725 PLDIAMEAANADIVLLL  741 (785)
T ss_pred             hhhHHhhhccccHHHHH
Confidence            99999877666655443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.65  E-value=8.6e-08  Score=60.25  Aligned_cols=69  Identities=13%  Similarity=0.074  Sum_probs=57.5

Q ss_pred             CCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCc
Q 043390           42 HSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPG  115 (150)
Q Consensus        42 ~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~  115 (150)
                      .+++.+|..|||+++.|+..|..+.+.+|+..|+-    .+...|..|.+++.+|-..|.. +++..|.+...+
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a----~vgv~d~ssldaaqlaek~g~~-~fvh~lfe~~~e   71 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVA----FVGVTDESSLDAAQLAEKGGAQ-AFVHSLFENDRE   71 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcc----cccccccccchHHHHHHhcChH-HHHHHHHHHhcc
Confidence            45788899999999999999999999999999843    2678888999999999988885 888888887654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.64  E-value=8.6e-08  Score=69.46  Aligned_cols=93  Identities=18%  Similarity=0.151  Sum_probs=84.1

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHH
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTIL   93 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l   93 (150)
                      .....||+|+. .|+-+.|+++|++++...++..|..|.|+||.|+..++..++++|++.|+.     +...|..|.||-
T Consensus       898 ~~~sllh~a~~-tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagas-----l~ktd~kg~tp~  971 (1004)
T KOG0782|consen  898 DHCSLLHYAAK-TGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGAS-----LRKTDSKGKTPQ  971 (1004)
T ss_pred             chhhHHHHHHh-cCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchh-----heecccCCCChH
Confidence            34456999999 999999999999999888888899999999999999999999999999998     678899999999


Q ss_pred             HHHHHcCCcHHHHHHHHhhC
Q 043390           94 HETASSSHALPVADKLFRKA  113 (150)
Q Consensus        94 ~~a~~~g~~~~~~~~Ll~~~  113 (150)
                      -.|-+.|+. ++..||-.+-
T Consensus       972 eraqqa~d~-dlaayle~rq  990 (1004)
T KOG0782|consen  972 ERAQQAGDP-DLAAYLESRQ  990 (1004)
T ss_pred             HHHHhcCCc-hHHHHHhhhh
Confidence            999999996 9999987664

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.60  E-value=4.5e-08  Score=74.73  Aligned_cols=96  Identities=20%  Similarity=0.130  Sum_probs=51.1

Q ss_pred             ccccCCCcHHHHHHhhCChHHHHHHHhh-CCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCC
Q 043390           46 VFTIYDDTVLHVAAYTKKSDLVMKLLDE-LPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNG  124 (150)
Q Consensus        46 ~~~~~g~~~L~~a~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g  124 (150)
                      .....|++.+|.+...+...+++.+++- +..     -...|.+|...+|+|+..|.  +..-++..-....++.+|..|
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~-----~~eld~d~qgV~hfca~lg~--ewA~ll~~~~~~ai~i~D~~G  641 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG-----DLELDRDGQGVIHFCAALGY--EWAFLPISADGVAIDIRDRNG  641 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccC-----chhhcccCCChhhHhhhcCC--ceeEEEEeecccccccccCCC
Confidence            3345566777777776666666666664 332     13445555555555444433  333333322223355566666


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhccC
Q 043390          125 GTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus       125 ~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      +||||+|+.+|+..++..|++.|+
T Consensus       642 ~tpL~wAa~~G~e~l~a~l~~lga  665 (975)
T KOG0520|consen  642 WTPLHWAAFRGREKLVASLIELGA  665 (975)
T ss_pred             CcccchHhhcCHHHHHHHHHHhcc
Confidence            666666666666666665554443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.53  E-value=2.4e-07  Score=64.11  Aligned_cols=68  Identities=16%  Similarity=0.149  Sum_probs=57.1

Q ss_pred             CcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccC-CCCCH
Q 043390           52 DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNN-NGGTA  127 (150)
Q Consensus        52 ~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~-~g~tp  127 (150)
                      .--|..||+.|..+.|++|+..|.+     +|.+|.+.+.||.+|..-|+ ++.+++|+++|+  +-.++. .|...
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn-----VN~vD~fD~spL~lAsLcGH-e~vvklLLenGA--iC~rdtf~G~RC  105 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN-----VNAVDRFDSSPLYLASLCGH-EDVVKLLLENGA--ICSRDTFDGDRC  105 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC-----cchhhcccccHHHHHHHcCc-HHHHHHHHHcCC--cccccccCcchh
Confidence            3458899999999999999999988     79999999999999999999 599999999996  334444 34443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.53  E-value=7.1e-07  Score=61.83  Aligned_cols=74  Identities=22%  Similarity=0.223  Sum_probs=60.9

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCC-CCChHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNK-AGNTILH   94 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~-~g~t~l~   94 (150)
                      ...++.|++ .|+.+.++.|++.  +.++|..|+-..+||.+|+.-||.+++++|+++|+-      +.+|. +|..+ |
T Consensus        37 f~elceacR-~GD~d~v~~LVet--gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi------C~rdtf~G~RC-~  106 (516)
T KOG0511|consen   37 FGELCEACR-AGDVDRVRYLVET--GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI------CSRDTFDGDRC-H  106 (516)
T ss_pred             hHHHHHHhh-cccHHHHHHHHHh--CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc------ccccccCcchh-h
Confidence            346999999 9999999999996  556889999999999999999999999999999997      44555 45544 4


Q ss_pred             HHHHc
Q 043390           95 ETASS   99 (150)
Q Consensus        95 ~a~~~   99 (150)
                      +++.+
T Consensus       107 YgaLn  111 (516)
T KOG0511|consen  107 YGALN  111 (516)
T ss_pred             hhhhh
Confidence            44443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.46  E-value=1.1e-06  Score=55.42  Aligned_cols=65  Identities=15%  Similarity=0.162  Sum_probs=58.3

Q ss_pred             ccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Q 043390           81 KMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGK  146 (150)
Q Consensus        81 ~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~  146 (150)
                      ++|.+|..|||+++.|+..|.. +.+.||+.+|.+.+.+.|..+.++..+|.+.|..+++..|.+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~-eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSN-EAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhcch-hHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            4788999999999999999997 9999999999777999999999999999999999999888754

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.38  E-value=6e-07  Score=68.84  Aligned_cols=120  Identities=15%  Similarity=0.022  Sum_probs=84.8

Q ss_pred             HHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 043390           19 LYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETAS   98 (150)
Q Consensus        19 l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~   98 (150)
                      +|.++. .+..--+.++++- .+......|.+|...+|+ |..+++++.-.++.....    .++.+|..|+||||||+.
T Consensus       578 lhL~a~-~lyawLie~~~e~-~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~----ai~i~D~~G~tpL~wAa~  650 (975)
T KOG0520|consen  578 LHLLAE-LLYAWLIEKVIEW-AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGV----AIDIRDRNGWTPLHWAAF  650 (975)
T ss_pred             HHHHHH-HhHHHHHHHHhcc-cccCchhhcccCCChhhH-hhhcCCceeEEEEeeccc----ccccccCCCCcccchHhh
Confidence            444555 5555555555553 122244568888889999 556666665554433222    278999999999999999


Q ss_pred             cCCcHHHHHHHHhhCCc-----ccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Q 043390           99 SSHALPVADKLFRKAPG-----LLGMRNNNGGTALLGAAHNGKIEIFNFLAGK  146 (150)
Q Consensus        99 ~g~~~~~~~~Ll~~~~~-----~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~  146 (150)
                      .|+ +.++..|.+.++.     ++......|.|+-..|..+|+..+..+|-+.
T Consensus       651 ~G~-e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  651 RGR-EKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cCH-HHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999 4999999988753     1333445689999999999999998888654

>smart00248 ANK ankyrin repeats

Probab=97.76  E-value=7e-05  Score=31.94  Aligned_cols=26  Identities=38%  Similarity=0.498  Sum_probs=16.6

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390          124 GGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       124 g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      |.||+++|+..++.++++.|++.+..
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            45666666666666666666666543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.56  E-value=0.00014  Score=56.05  Aligned_cols=85  Identities=21%  Similarity=0.130  Sum_probs=71.5

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHE   95 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~   95 (150)
                      ...+|.|+. .+....+..|++.+.+  ++..|..|++|+|.+...|+...+..++..|++     .+..+.+|.+|+++
T Consensus       657 ~s~lh~a~~-~~~~~~~e~ll~~ga~--vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-----~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  657 CSLLHVAVG-TGDSGAVELLLQNGAD--VNALDSKGRTPLHHATASGHTSIACLLLKRGAD-----PNAFDPDGKLPLDI  728 (785)
T ss_pred             cchhhhhhc-cchHHHHHHHHhcCCc--chhhhccCCCcchhhhhhcccchhhhhcccccc-----ccccCccCcchhhH
Confidence            445888998 8888888888887666  889999999999999999999999999999998     48899999999999


Q ss_pred             HHHcCCcHHHHHHH
Q 043390           96 TASSSHALPVADKL  109 (150)
Q Consensus        96 a~~~g~~~~~~~~L  109 (150)
                      |....+. +.+-++
T Consensus       729 a~~~~~~-d~~~l~  741 (785)
T KOG0521|consen  729 AMEAANA-DIVLLL  741 (785)
T ss_pred             Hhhhccc-cHHHHH
Confidence            9877654 544433

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.51  E-value=0.00021  Score=51.55  Aligned_cols=67  Identities=16%  Similarity=0.168  Sum_probs=51.2

Q ss_pred             hHHHHHHHhhCCCCccccc-ccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHH
Q 043390           64 SDLVMKLLDELPDQSLDKM-TRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAA  132 (150)
Q Consensus        64 ~~~v~~ll~~~~~~~~~~~-~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~  132 (150)
                      ...+++|..++...|.... ...+..-.|+||+|+..|.. +++.+||+.++ ++..+|..|.||+.++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~-k~v~~~Leeg~-Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGAR-KCVKYFLEEGC-DPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchH-HHHHHHHHhcC-CchhcccCCCCcccccc
Confidence            5678888888776433221 22344567999999999995 99999999995 49999999999998876

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.47  E-value=0.0019  Score=42.40  Aligned_cols=95  Identities=17%  Similarity=0.131  Sum_probs=65.8

Q ss_pred             CcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHc-CCcHHHHHHHHhhCCccccc---ccCCCCCH
Q 043390           52 DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASS-SHALPVADKLFRKAPGLLGM---RNNNGGTA  127 (150)
Q Consensus        52 ~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~-g~~~~~~~~Ll~~~~~~~~~---~~~~g~tp  127 (150)
                      .+++.++..++..+++-+|+.+..-...+.+..  ..+..-+-++... |-...++++++.+|-.++|.   +-+.|.|-
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            467888888888899999998754310000111  1133334444432 32247899999999665653   34679999


Q ss_pred             HHHHHHcCCHHHHHHHHhccC
Q 043390          128 LLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus       128 l~~a~~~g~~~~~~~L~~~~~  148 (150)
                      |.-|.+.+..+++.+|+++|+
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCc
Confidence            999999999999999999998

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>smart00248 ANK ankyrin repeats

Probab=97.38  E-value=0.00043  Score=29.26  Aligned_cols=26  Identities=38%  Similarity=0.404  Sum_probs=16.2

Q ss_pred             CCcHHHHHHhhCChHHHHHHHhhCCC
Q 043390           51 DDTVLHVAAYTKKSDLVMKLLDELPD   76 (150)
Q Consensus        51 g~~~L~~a~~~~~~~~v~~ll~~~~~   76 (150)
                      |.+|+|+|+..++.++++.++..+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            45666666666666666666665543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.99  E-value=0.0012  Score=50.51  Aligned_cols=85  Identities=20%  Similarity=0.184  Sum_probs=70.7

Q ss_pred             cHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHH
Q 043390           53 TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAA  132 (150)
Q Consensus        53 ~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~  132 (150)
                      --.-.|+.+|+...|+..+..... ..-++|.+|.-|.+++++|..+-+. +++++|++..-.   .     .-+|.+|+
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~-~~lninc~d~lGr~al~iai~nenl-e~~eLLl~~~~~---~-----gdALL~aI   96 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAV-SKLNINCRDPLGRLALHIAIDNENL-ELQELLLDTSSE---E-----GDALLLAI   96 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccc-cccchhccChHhhhceecccccccH-HHHHHHhcCccc---c-----chHHHHHH
Confidence            345678999999999988887655 3446899999999999999999997 999999988632   2     46799999


Q ss_pred             HcCCHHHHHHHHhcc
Q 043390          133 HNGKIEIFNFLAGKN  147 (150)
Q Consensus       133 ~~g~~~~~~~L~~~~  147 (150)
                      ..|..++++.++.+.
T Consensus        97 ~~~~v~~VE~ll~~~  111 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHF  111 (822)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999998653

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.85  E-value=0.002  Score=46.73  Aligned_cols=45  Identities=29%  Similarity=0.256  Sum_probs=40.0

Q ss_pred             ccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 043390           48 TIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETA   97 (150)
Q Consensus        48 ~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~   97 (150)
                      +.--.|+||+|+..|.-++|.+++..|.+|     ..+|..|.||..++.
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-----~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLEEGCDP-----STKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHHhcCCc-----hhcccCCCCcccccc
Confidence            334568999999999999999999999885     789999999999987

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.87  E-value=0.15  Score=32.68  Aligned_cols=113  Identities=13%  Similarity=0.192  Sum_probs=70.4

Q ss_pred             HHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccc-----------------
Q 043390           19 LYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDK-----------------   81 (150)
Q Consensus        19 l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~-----------------   81 (150)
                      +..|+. .+-.+.+++.-+...+.     -...++.+-.||+..+.++|+|+-++-...+...                 
T Consensus        50 l~HAVk-~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~qnL~i~~~~~iFdIA~~~kDlsLyslG  123 (192)
T PF03158_consen   50 LYHAVK-YNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQNLHIYNPEDIFDIAFAKKDLSLYSLG  123 (192)
T ss_pred             HHHHHH-cCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhhccCCCCchhhhhhhhhccchhHHHHH
Confidence            455666 66666555544432110     1234567778999999999999866543321110                 


Q ss_pred             ----ccc-CCCCC-------ChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHh
Q 043390           82 ----MTR-QNKAG-------NTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAG  145 (150)
Q Consensus        82 ----~~~-~~~~g-------~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~  145 (150)
                          ++. .+..+       ..-|..|+..|.. +.+...++.|++ ++.      ++|..|+..+|..++.+++.
T Consensus       124 Y~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll-~F~letlkygg~-~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  124 YKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLL-PFVLETLKYGGN-VDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHhhcccccccCHHHHHHHHHHHHHHCCCH-HHHHHHHHcCCc-ccH------HHHHHHHHhhHHHHHHHhhc
Confidence                001 00001       1234578888887 888888888865 432      88999999999999998874

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.80  E-value=0.18  Score=27.34  Aligned_cols=49  Identities=18%  Similarity=0.171  Sum_probs=38.5

Q ss_pred             CcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhC
Q 043390           52 DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKA  113 (150)
Q Consensus        52 ~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~  113 (150)
                      ...+..|+..|+.++++.+++.+.         .+   ...+..|+..-+. +++++|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~---------~~---~~~l~~AI~~H~n-~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK---------PD---NDCLEYAIKSHNN-EIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc---------cH---HHHHHHHHHHhhH-HHHHHHHHhc
Confidence            457889999999999999886631         22   5678889988886 9999998874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.96  E-value=0.59  Score=25.33  Aligned_cols=46  Identities=15%  Similarity=0.137  Sum_probs=32.1

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhh
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDE   73 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~   73 (150)
                      .+..|.. .|+.+.++.++..     .    .....++..|+...+.+++++|++.
T Consensus         9 tl~~Ai~-GGN~eII~~c~~~-----~----~~~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAII-GGNFEIINICLKK-----N----KPDNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHh-CCCHHHHHHHHHH-----h----ccHHHHHHHHHHHhhHHHHHHHHHh
Confidence            4556666 8888877666643     1    2225678888888888888888876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=88.01  E-value=6.2  Score=26.55  Aligned_cols=91  Identities=9%  Similarity=0.063  Sum_probs=56.4

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccc-cccCCCcHHHHHHhh--CChHHHHHHHhhCCCCccccccc---CCCCCCh
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCV-FTIYDDTVLHVAAYT--KKSDLVMKLLDELPDQSLDKMTR---QNKAGNT   91 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~-~~~~g~~~L~~a~~~--~~~~~v~~ll~~~~~~~~~~~~~---~~~~g~t   91 (150)
                      .+..+.. .+..+.+..|+....=...++ .-..+..-+-++...  .+..++++++..|...    +|.   +-.+|.|
T Consensus       182 Am~~si~-~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~----vN~~F~~~NSGdt  256 (284)
T PF06128_consen  182 AMWLSIG-NAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVD----VNKKFQKVNSGDT  256 (284)
T ss_pred             HHHHHhc-ccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccc----cchhhhccCCcch
Confidence            3555555 555556666665521110111 011122345555544  3468899999988542    333   4457999


Q ss_pred             HHHHHHHcCCcHHHHHHHHhhCC
Q 043390           92 ILHETASSSHALPVADKLFRKAP  114 (150)
Q Consensus        92 ~l~~a~~~g~~~~~~~~Ll~~~~  114 (150)
                      -|.-|...++. +++.+|++.|+
T Consensus       257 MLDNA~Ky~~~-emi~~Llk~GA  278 (284)
T PF06128_consen  257 MLDNAMKYKNS-EMIAFLLKYGA  278 (284)
T ss_pred             HHHhHHhcCcH-HHHHHHHHcCc
Confidence            99999999996 99999999996

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=83.35  E-value=4.3  Score=26.25  Aligned_cols=46  Identities=20%  Similarity=0.201  Sum_probs=30.0

Q ss_pred             HHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHh
Q 043390           54 VLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFR  111 (150)
Q Consensus        54 ~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~  111 (150)
                      -|..|+..|-.+.+-..+.+|.+     ++.      +.|..|+..++. .++.+++.
T Consensus       146 hl~~a~~kgll~F~letlkygg~-----~~~------~vls~Av~ynhR-kIL~yfi~  191 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYGGN-----VDI------IVLSQAVKYNHR-KILDYFIR  191 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCc-----ccH------HHHHHHHHhhHH-HHHHHhhc
Confidence            35567777777777666777766     344      467777777774 77766653

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
2pnn_A	273	Transient receptor potential cation channel subfa	3e-09
2pnn_A	273	Transient receptor potential cation channel subfa	3e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-08
2etb_A	256	Transient receptor potential cation channel subfam	7e-07
2etb_A	256	Transient receptor potential cation channel subfam	8e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-05
2rfa_A	232	Transient receptor potential cation channel subfa	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	4e-04
2rfa_A	232	Transient receptor potential cation channel subfa	7e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-04

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 16/118 (13%)

Query: 40  PDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASS 99
                     + +  L +AA T +  +V K L +   Q  D  + ++  GNT+LH     
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIV-KFLLQNSWQPADI-SARDSVGNTVLHALVEV 194

Query: 100 SHALPVADKLFRKAPGLL--------------GMRNNNGGTALLGAAHNGKIEIFNFL 143
           +       K        +               + N  G T L  AA +GKI +  ++
Sbjct: 195 ADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 15/110 (13%)

Query: 49  IYDDTVLHVAAYTKKSDLVMKLLD---ELPDQSLDKMTRQNKAGNTILHETASSSHA--L 103
           +YD   +  A        +  LL        +  D   +  + G T L +   + H    
Sbjct: 11  LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQN 70

Query: 104 PVADKLFRKAPGLLGMR----------NNNGGTALLGAAHNGKIEIFNFL 143
                L   A     ++             G TAL  A     + +   L
Sbjct: 71  DTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 16/105 (15%)

Query: 53  TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRK 112
             L +AA T +  +V  L +    Q+   + RQ+  GNT+LH   + +       K   K
Sbjct: 142 LPLSLAACTNQPHIVHYLTENGHKQA--DLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199

Query: 113 APGLL--------------GMRNNNGGTALLGAAHNGKIEIFNFL 143
              LL               + NN+G + L+ AA  GKI IF  +
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 16/105 (15%)

Query: 53  TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSH------ALPVA 106
             L +AA TK+ D+V   L E P Q        +  GNT+LH     +       AL + 
Sbjct: 138 LPLSLAACTKQWDVV-TYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIH 195

Query: 107 --------DKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
                            L  + N+ G T L  AA  GKIEIF  +
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 37.1 bits (86), Expect = 8e-04
 Identities = 17/111 (15%), Positives = 27/111 (24%), Gaps = 19/111 (17%)

Query: 50  YDDTVLHVAAYTKKSDLVMKLLDELPDQS---LDKMTRQNKAGNTILHETASSSH----- 101
           +D   L         + +  LL+ L   S    D    +   G T L +   +       
Sbjct: 1   FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60

Query: 102 ---------ALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
                          K    A          G +AL  A     ++    L
Sbjct: 61  CIMPLLQIDKDSGNPKPLVNAQ--CTDEFYQGHSALHIAIEKRSLQCVKLL 109

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 50  YDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKL 109
            D+T L  A   +  + +  ++D +P +S  ++   NK GN+ LH     +    VA + 
Sbjct: 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW-EDVAMRF 230

Query: 110 FRKAPGLLG----MRNNNGGTALLGAAHNGKIEIFNFL 143
                   G    M +N     L  +     + +   L
Sbjct: 231 VEM-----GIDVNMEDNEHTVPLYLSVRAAMVLLTKEL 263

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 50  YDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKL 109
             D  LH AA       + + LD         +   +KAG+T L+      H   + + L
Sbjct: 72  SIDNPLHEAAKRGNLSWLRECLDNRVG-----VNGLDKAGSTALYWACHGGH-KDIVEML 125

Query: 110 FRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
           F +    L  +N  G TAL  AA  G  +I   L
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 12/92 (13%)

Query: 52  DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFR 111
              +  A YT +     +L  E  D     +       +T   +  S      +      
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGD-----IIYITDMSDTNWWKGTSKGRTGLIPSNYVA 67

Query: 112 KAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
           +       +  +    L  AA  G +      
Sbjct: 68  E-------QAESIDNPLHEAAKRGNLSWLREC 92

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 50  YDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSH---ALPVA 106
           Y +  L  AA     ++V  L++   D     +  Q+  GNT+LH      +   A  + 
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGAD-----IRAQDSLGNTVLHILILQPNKTFACQMY 174

Query: 107 DKLFRK-----APGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
           + L           L  + NN G T    A   G I +F  L
Sbjct: 175 NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 13/103 (12%)

Query: 53  TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKL--- 109
           T LH+AA     +  M L++  P+   + MT +   G T LH    + + + +   L   
Sbjct: 39  TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQN-VNLVRALLAR 97

Query: 110 ---------FRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
                                  G   L  AA  G  EI   L
Sbjct: 98  GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 49  IYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADK 108
           +  ++ L +AA       + KLL     +  + + ++   G T LH  A   + L  A  
Sbjct: 1   MIWESPLLLAAKENDVQALSKLLK---FEGCE-VHQRGAMGETALHIAALYDN-LEAAMV 55

Query: 109 LFRKAPGLLGM----RNNNGGTALLGAAHNGKIEIFNFL 143
           L   AP L+          G TAL  A  N  + +   L
Sbjct: 56  LMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRAL 94

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 15/100 (15%)

Query: 48  TIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVAD 107
           ++   T LH+AA    +++V  LL +  +         NK+G T LH  A   H +PVAD
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQAN-----GNLGNKSGLTPLHLVAQEGH-VPVAD 295

Query: 108 KLFRKAPGLLG----MRNNNGGTALLGAAHNGKIEIFNFL 143
            L +      G         G T L  A+H G I++  FL
Sbjct: 296 VLIKH-----GVMVDATTRMGYTPLHVASHYGNIKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 48  TIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVAD 107
           T    T LHVAA   K  +   LL+              K G T LH     ++ L +  
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHP-----NAAGKNGLTPLHVAVHHNN-LDIVK 196

Query: 108 KLFRKAPGLLG----MRNNNGGTALLGAAHNGKIEIFNFL 143
            L  +     G        NG T L  AA   ++E+   L
Sbjct: 197 LLLPR-----GGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 23/98 (23%), Positives = 31/98 (31%), Gaps = 15/98 (15%)

Query: 50  YDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKL 109
              T LHVA++     +V  LL              N    T LH  A + H   VA  L
Sbjct: 13  SGLTPLHVASFMGHLPIVKNLLQRGAS-----PNVSNVKVETPLHMAARAGH-TEVAKYL 66

Query: 110 FRKAPGLLG----MRNNNGGTALLGAAHNGKIEIFNFL 143
            +            +  +  T L  AA  G   +   L
Sbjct: 67  LQN-----KAKVNAKAKDDQTPLHCAARIGHTNMVKLL 99

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 48  TIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVAD 107
           T    T LHVA++     LV  LL    D     +  + K G + LH+ A   H   +  
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQAD-----VNAKTKLGYSPLHQAAQQGH-TDIVT 361

Query: 108 KLFRKAPG-LLGMRNNNGGTALLGAAHNGKIEIFNFL 143
            L +   G      +++G T L  A   G I + + L
Sbjct: 362 LLLKN--GASPNEVSSDGTTPLAIAKRLGYISVTDVL 396

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 15/95 (15%)

Query: 53  TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRK 112
           T LH+AA     + V+ LL++   Q+        K G T LH  A     + VA+ L  +
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQA-----CMTKKGFTPLHVAAKYGK-VRVAELLLER 168

Query: 113 APGLLG----MRNNNGGTALLGAAHNGKIEIFNFL 143
                         NG T L  A H+  ++I   L
Sbjct: 169 -----DAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 13/101 (12%)

Query: 50  YDDTVLHVAAYTKKSDLVMKLLDELPDQSLDK---MTRQNKAGNTILHETASSSHALPVA 106
           ++ TVLH  A    ++    L+     + +     +   +   NT L     +     + 
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR-RRLV 182

Query: 107 DKLFRKAPGLLG----MRNNNGGTALLGAAHNGKIEIFNFL 143
             L +      G    + N +  +AL  AA N    +  ++
Sbjct: 183 AYLMKA-----GADPTIYNKSERSALHQAAANRDFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 9/101 (8%)

Query: 50  YDDTVLHVAAYTKKSDLV--MKLL-----DELPDQSLDKMTRQNKAGNTILHETASSSHA 102
              T L + A+ +  D V   KLL         D +  K + +   G T LH  A  S+ 
Sbjct: 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS-EKYKGRTALHYAAQVSN- 291

Query: 103 LPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
           +P+   L  +       ++ +G T ++ AA  G+IE+  +L
Sbjct: 292 MPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 332

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 11/96 (11%)

Query: 53  TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRK 112
           T LH+A  T + ++   LL    D  L     ++  GNT LH        L     L + 
Sbjct: 47  TPLHLAVITNQPEIAEALLGAGCDPEL-----RDFRGNTPLHLACEQGC-LASVGVLTQS 100

Query: 113 -----APGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
                   +L   N NG T L  A+ +G + I   L
Sbjct: 101 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL 136

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 10/102 (9%)

Query: 50  YDDTVLHVAAYTKKSDLVMKLLDELPDQSLDK---MTRQNKAGNTILHETASSSHA---- 102
              T+         +D+      EL    L+K   +T   K    ++ +   +       
Sbjct: 74  EGTTLFFPLFQGGGNDITGTT--ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENE 131

Query: 103 -LPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
            +P+   +F ++   L +++  G TAL       K      +
Sbjct: 132 MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 13/95 (13%)

Query: 53  TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRK 112
           T  H+A      ++V  L D      L+K       G T LH          V+  L   
Sbjct: 74  TPFHIACSVGNLEVVKSLYDRPLKPDLNK---ITNQGVTCLHLAVGKKW-FEVSQFLIEN 129

Query: 113 APGLLG----MRNNNGGTALLGAAHNGKIEIFNFL 143
                G    +++      L  AA  G +++   L
Sbjct: 130 -----GASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 14/100 (14%)

Query: 48  TIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVAD 107
            + D+ +L  A   +  DLV +LL+       +   ++ + G T LH     S    + +
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSR-EDIVE 56

Query: 108 KLFRKAPGLLG----MRNNNGGTALLGAAHNGKIEIFNFL 143
            L R      G    +R  NG T  L AA  G +++    
Sbjct: 57  LLLRH-----GADPVLRKKNGATPFLLAAIAGSVKLLKLF 91

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 4e-04
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 22/108 (20%)

Query: 1   MSSIGIEETDAKNKINSELYNALMIKQDE-QKVIELCRKV--PD------HSLCVFTIYD 51
           +S I     D     +    N   +  D+   +IE    V  P         L VF    
Sbjct: 330 LSIIAESIRDGLATWD----NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--P 383

Query: 52  DT-----VLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH 94
                  +L +  +      VM ++++L   SL  + +Q K     + 
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIP 429

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 37.8 bits (89), Expect = 5e-04
 Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 11/100 (11%)

Query: 48  TIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVAD 107
               DT LH+A        V +L++       +     N    T LH    ++    V  
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTL-PSVVR 63

Query: 108 KLFRKAPGLLG----MRNNNGGTALLGAAHNGKIEIFNFL 143
            L        G      + +G TA   A  +        L
Sbjct: 64  LLVTA-----GASPMALDRHGQTAAHLACEHRSPTCLRAL 98

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 37.8 bits (89), Expect = 5e-04
 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 53  TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRK 112
           T LH+AA   +SD   +LL+   D        Q+  G T LH  A S+ A  V   L R 
Sbjct: 59  TALHLAARYSRSDAAKRLLEASAD-----ANIQDNMGRTPLH-AAVSADAQGVFQILIRN 112

Query: 113 APGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
               L  R ++G T L+ AA      +   L
Sbjct: 113 RATDLDARMHDGTTPLILAARLAVEGMLEDL 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.98
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.94
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.94
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.94
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
2rfa_A	232	Transient receptor potential cation channel subfa	99.94
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.94
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
2rfa_A	232	Transient receptor potential cation channel subfa	99.94
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.94
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.94
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.93
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.93
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.93
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.93
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
2etb_A	256	Transient receptor potential cation channel subfam	99.93
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.93
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.93
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.93
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.92
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.92
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.92
2pnn_A	273	Transient receptor potential cation channel subfa	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.92
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.92
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.89
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.87
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.87
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.78
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.77

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.9e-33  Score=174.52  Aligned_cols=137  Identities=23%  Similarity=0.252  Sum_probs=110.7

Q ss_pred             cccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccc
Q 043390            4 IGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMT   83 (150)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~   83 (150)
                      .|++....+....++++.|+. .++.+.++.++..+.+  ++.+|..|+||||+|+..|+.+++++|++.|++     ++
T Consensus        26 ~Gadvn~~d~~g~t~l~~a~~-~~~~~~~~~ll~~gad--~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-----vn   97 (169)
T 4gpm_A           26 NGADVNASDSDGRTPLHHAAE-NGHKEVVKLLISKGAD--VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-----VN   97 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TT
T ss_pred             CCCCCCCcCCCCCCHHHHHHH-cCCHHHHHHHHhcccc--hhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCC-----CC
Confidence            344444444555666777777 7777777777776544  667888899999999999999999999999988     68


Q ss_pred             cCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           84 RQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        84 ~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      .+|..|+||||+|+..|+. +++++|++.|++ ++.+|..|+|||++|++.|+.+++++|+++|+.+
T Consensus        98 ~~d~~G~TpLh~A~~~g~~-~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A           98 AKDSDGRTPLHHAAENGHK-EVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             CCCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            8899999999999999996 999999999865 8899999999999999999999999999999864

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.98  E-value=4.9e-31  Score=165.77  Aligned_cols=126  Identities=25%  Similarity=0.350  Sum_probs=117.5

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      +.++|+.|+. .|+.+.|+.|++.+.+  ++.+|..|+||||+|+..++.+++++|+..|++     ++.+|..|+||||
T Consensus         4 lg~~L~~Aa~-~G~~~~v~~Ll~~Gad--vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-----~~~~d~~g~TpLh   75 (169)
T 4gpm_A            4 LGKRLIEAAE-NGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-----VNAKDSDGRTPLH   75 (169)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-----hhhhccCCCCHHH
Confidence            3457999999 9999999999998655  788999999999999999999999999999998     6889999999999


Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      +|+..|+. +++++|++.|++ ++.+|..|+||||+|++.|+.+++++|+++|+.+
T Consensus        76 ~A~~~g~~-~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~  129 (169)
T 4gpm_A           76 HAAENGHK-EVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV  129 (169)
T ss_dssp             HHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHcCCH-HHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            99999996 999999999965 9999999999999999999999999999999863

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.97  E-value=2.9e-29  Score=152.43  Aligned_cols=127  Identities=22%  Similarity=0.229  Sum_probs=115.0

Q ss_pred             hhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCC
Q 043390           11 AKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGN   90 (150)
Q Consensus        11 ~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~   90 (150)
                      +.....++++.|+. .|+.+.++.|+..+.+  ++..|..|+||||+|+..++.+++++|++.|++     ++.+|..|.
T Consensus        10 ~~~~~~t~l~~A~~-~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~d~~g~   81 (136)
T 2jab_A           10 HGSDLGKKLLEAAR-AGQDDEVRILMANGAD--VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-----VNAVDAIGF   81 (136)
T ss_dssp             --CHHHHHHHHHHH-HTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTCC
T ss_pred             ccccccHHHHHHHH-hCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCcCCCCCC
Confidence            34455667999999 9999999999998655  678899999999999999999999999999998     688999999


Q ss_pred             hHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 043390           91 TILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKN  147 (150)
Q Consensus        91 t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~  147 (150)
                      ||||+|+..|+. +++++|++.++. ++.+|..|.|||++|+..|+.+++++|++.|
T Consensus        82 t~L~~A~~~~~~-~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           82 TPLHLAAFIGHL-EIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHcCCH-HHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999996 999999999865 9999999999999999999999999999886

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=6.9e-30  Score=155.17  Aligned_cols=128  Identities=15%  Similarity=0.109  Sum_probs=117.2

Q ss_pred             hhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCC-C
Q 043390           11 AKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKA-G   89 (150)
Q Consensus        11 ~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~-g   89 (150)
                      .+....++|+.|+. .|+.+.++.|++.+.+  ++.++..|+||||+|+. ++.+++++|++.|++     ++.+|.. |
T Consensus         8 ~~~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-----~~~~~~~~g   78 (136)
T 1d9s_A            8 LGGSSDAGLATAAA-RGQVETVRQLLEAGAD--PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-----PNCADPATL   78 (136)
T ss_dssp             CCCCCSCHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-----SSCCBTTTT
T ss_pred             CCCCCccHHHHHHH-cCCHHHHHHHHHcCCC--cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-----CCCcCCCCC
Confidence            34455667999999 9999999999998544  77889999999999999 999999999999998     6889999 9


Q ss_pred             ChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           90 NTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        90 ~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      .||||+|+..|+. +++++|++.++. ++.+|..|.||||+|+..++.+++++|+++|+.
T Consensus        79 ~t~L~~A~~~~~~-~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           79 TRPVHDAAREGFL-DTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             BCHHHHHHHHTCH-HHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHcCCH-HHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999996 999999999965 999999999999999999999999999999974

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.9e-28  Score=152.63  Aligned_cols=135  Identities=20%  Similarity=0.183  Sum_probs=102.5

Q ss_pred             ccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCccccccc
Q 043390            5 GIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTR   84 (150)
Q Consensus         5 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~   84 (150)
                      |.+....+....++++.|+.  |+.+.++.|+..+.+  ++.++..|+||||+|+..++.+++++|++.|++     ++.
T Consensus        28 ~~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~   98 (162)
T 1ihb_A           28 NVNVNAQNGFGRTALQVMKL--GNPEIARRLLLRGAN--PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-----VNI   98 (162)
T ss_dssp             CCCTTCCCTTSCCHHHHCCS--SCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTC
T ss_pred             CCCccccCccCccHHHHHHc--CcHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCC
Confidence            33333334444555666543  777777777776443  566778888888888888888888888888877     577


Q ss_pred             CCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           85 QNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        85 ~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      +|..|.||||+|+..|+. +++++|++.++..++.++..|.|||++|+..|+.+++++|+++|+.
T Consensus        99 ~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           99 EDNEGNLPLHLAAKEGHL-RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CCTTSCCHHHHHHHTTCH-HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             cCCCCCCHHHHHHHcCCH-HHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            888888888888888886 8888888888765678888888888888888888888888888874

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=4.2e-28  Score=152.23  Aligned_cols=125  Identities=24%  Similarity=0.257  Sum_probs=87.4

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      ..+.++.|+. .|+.+.++.|++.+.+  ++..|..|.||||+|+..++.+++++|++.|++     ++.+|..|.||||
T Consensus        14 ~~~~l~~A~~-~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~   85 (169)
T 2y1l_E           14 LGKKLLEAAR-AGRDDEVRILMANGAD--VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-----VNAVDHAGMTPLR   85 (169)
T ss_dssp             HHHHHHHHHH-HTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHH
T ss_pred             ccchHHHHHH-cCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCCHHH
Confidence            3445777777 7777777777776433  556677777777777777777777777777766     4666777777777


Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      +|+..|+. +++++|++.++. ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus        86 ~A~~~~~~-~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  138 (169)
T 2y1l_E           86 LAALFGHL-EIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD  138 (169)
T ss_dssp             HHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHcCCH-HHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            77777775 777777777644 666777777777777777777777777776654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=8.7e-28  Score=150.81  Aligned_cols=133  Identities=21%  Similarity=0.207  Sum_probs=118.5

Q ss_pred             ccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCccccccc
Q 043390            5 GIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTR   84 (150)
Q Consensus         5 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~   84 (150)
                      |.+....+....++|+.|+. .|+.+.++.|++.+.+  ++..|..|+||||+|+..++.+++++|++.|++     ++.
T Consensus        37 g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~  108 (169)
T 2y1l_E           37 GADVNAEDASGWTPLHLAAF-NGHLEIVEVLLKNGAD--VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-----VNA  108 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTC
T ss_pred             CCCCCCCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCC
Confidence            44433444556678999999 9999999999998554  678899999999999999999999999999998     688


Q ss_pred             CCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 043390           85 QNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKN  147 (150)
Q Consensus        85 ~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~  147 (150)
                      +|..|.||||+|+..|+. +++++|++.++. ++.+|..|.|||++|+..|+.+++++|++.|
T Consensus       109 ~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          109 NDMEGHTPLHLAAMFGHL-EIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999999996 999999999965 9999999999999999999999999999876

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=3.9e-28  Score=162.84  Aligned_cols=138  Identities=20%  Similarity=0.192  Sum_probs=120.7

Q ss_pred             CcccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCccccc
Q 043390            3 SIGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKM   82 (150)
Q Consensus         3 s~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~   82 (150)
                      ..|++....+....++||.|+. .|+.+.++.|+..+.+  ++..+..|.||+|+|+..++.+++++|++.|++     +
T Consensus        74 ~~Gadvn~~d~~G~TpLh~A~~-~g~~~~v~~Ll~~~a~--~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-----~  145 (269)
T 4b93_B           74 ASGLGVNVTSQDGSSPLHVAAL-HGRADLIPLLLKHGAN--AGARNADQAVPLHLACQQGHFQVVKCLLDSNAK-----P  145 (269)
T ss_dssp             -CCCCTTCCCTTSCCHHHHHHH-TTCTTHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----S
T ss_pred             HCCCCCCCcCCCCCCHHHHHHH-cCcHHHHHHHHhcCCC--cCccCCCCCCccccccccChHHHHHHHHHCCCC-----C
Confidence            3444444445556678999999 9999999999988655  677888999999999999999999999999988     6


Q ss_pred             ccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           83 TRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        83 ~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      +.+|..|.||||+|+..|+. +++++|++.|++ ++.++..|.||||+|+..|+.+++++|+++|+.+
T Consensus       146 n~~d~~g~TpL~~A~~~g~~-~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~  211 (269)
T 4b93_B          146 NKKDLSGNTPLIYACSGGHH-ELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLHGASV  211 (269)
T ss_dssp             CCCCTTCCCHHHHHHHTTCG-GGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             CCCCCCCCCHHHHHHHCCCH-HHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            88999999999999999997 999999999965 9999999999999999999999999999999863

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=1.2e-27  Score=142.88  Aligned_cols=124  Identities=27%  Similarity=0.284  Sum_probs=114.8

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHE   95 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~   95 (150)
                      .++|+.|+. .|+.+.++.++..+.+  ++..+..|.||||+|+..++.+++++|++.|.+     ++.++..|.||||+
T Consensus         3 ~t~L~~A~~-~~~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~l~~   74 (126)
T 1n0r_A            3 RTPLHLAAR-NGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHL   74 (126)
T ss_dssp             CCHHHHHHH-HTCHHHHHHHHHHTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHH
T ss_pred             ccHHHHHHH-cCcHHHHHHHHHcCCC--CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-----CcccCCCCCcHHHH
Confidence            456999999 9999999999998655  677899999999999999999999999999988     68899999999999


Q ss_pred             HHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           96 TASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        96 a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      |+..|+. +++++|++.++. ++.+|..|.|||++|+..|+.+++++|+++|+.
T Consensus        75 A~~~~~~-~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           75 AARNGHL-EVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHcChH-HHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999996 999999999965 999999999999999999999999999999974

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1e-27  Score=150.06  Aligned_cols=124  Identities=17%  Similarity=0.101  Sum_probs=70.6

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      ..++|+.|+. .|+.+.++.|++.+.+  ++..+..|.||||+|+..++.+++++|++.|++     ++.+|..|.||||
T Consensus        36 g~t~L~~A~~-~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~  107 (167)
T 3v31_A           36 GFTPLMWAAA-HGQIAVVEFLLQNGAD--PQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-----VNEYDWNGGTPLL  107 (167)
T ss_dssp             SCCHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-----TTCCCTTSCCHHH
T ss_pred             CCCHHHHHHH-CCCHHHHHHHHHcCCC--CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-----CCcCCCCCCCHHH
Confidence            3444555555 5555555555555332  444555555666666666666666666655555     3555555666666


Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      +|+..|+. +++++|++.|+. ++.++..|.|||++|+..|+.+++++|++++.
T Consensus       108 ~A~~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A          108 YAVHGNHV-KCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             HHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcCCH-HHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            66666654 666666665543 55555566666666666666666666655543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=1.9e-28  Score=152.02  Aligned_cols=126  Identities=16%  Similarity=0.086  Sum_probs=114.0

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCCh-
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNT-   91 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t-   91 (150)
                      ....++|+.|+. .|+.+.++.|+..+.+  ++..+..|+||||+|+ .++.+++++|++.|++     ++.+|..|.| 
T Consensus        10 ~~~~t~L~~A~~-~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-----~~~~d~~g~tt   80 (156)
T 1bi7_B           10 EPSADWLATAAA-RGRVEEVRALLEAGAN--PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-----PNCADPATLTR   80 (156)
T ss_dssp             CCSTTHHHHHHH-HTCHHHHHHHHTTTCC--TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-----CCCCCTTTCCC
T ss_pred             ccchHHHHHHHH-cCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-----CCCcCCCCCcH
Confidence            344667999999 9999999999988544  7788999999999985 8999999999999988     6889999999 


Q ss_pred             HHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           92 ILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        92 ~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      |||+|+..|+. +++++|++.|+. ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus        81 pL~~A~~~~~~-~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~  136 (156)
T 1bi7_B           81 PVHDAAREGFL-DTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG  136 (156)
T ss_dssp             HHHHHHHHTCH-HHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--
T ss_pred             HHHHHHHCCCH-HHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC
Confidence            99999999996 999999999965 999999999999999999999999999999985

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.5e-27  Score=146.44  Aligned_cols=122  Identities=20%  Similarity=0.166  Sum_probs=83.2

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHH
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHET   96 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a   96 (150)
                      +.|+.|+. .|+.+.++.+++.+.+.  + .+..|.||||+|+..|+.+++++|++.|.+     ++.++..|.||||+|
T Consensus         4 ~~L~~A~~-~g~~~~v~~Ll~~g~~~--~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A   74 (153)
T 1awc_B            4 KKLLEAAR-AGQDDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-----RDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHH-HTCHHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-----TTCCCTTCCCHHHHH
T ss_pred             HHHHHHHH-cCCHHHHHHHHHcCCCC--C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHH
Confidence            45667777 77777777777765442  1 366677777777777777777777777666     456666777777777


Q ss_pred             HHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           97 ASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        97 ~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      +..|+. +++++|++.|+. ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus        75 ~~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  125 (153)
T 1awc_B           75 ASEGHA-NIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD  125 (153)
T ss_dssp             HHHTCH-HHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHcChH-HHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            777774 777777776644 666777777777777777777777777776654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.3e-27  Score=149.30  Aligned_cols=127  Identities=26%  Similarity=0.253  Sum_probs=98.7

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHH
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTIL   93 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l   93 (150)
                      ...++|+.|+. .|+.+.++.++...+ ...+..+..|+||||+|+..++.+++++|++.|.+     ++.+|..|.|||
T Consensus         7 ~~~~~l~~A~~-~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L   79 (165)
T 3twr_A            7 EADRQLLEAAK-AGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-----VHAKDKGGLVPL   79 (165)
T ss_dssp             HHHHHHHHHHH-HTCHHHHHHHCCTTT-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHH
T ss_pred             hhhHHHHHHHH-hCCHHHHHHHHHcCC-CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-----CCccCCCCCCHH
Confidence            34556888888 888888888777532 33555677778888888888888888888888877     577788888888


Q ss_pred             HHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           94 HETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        94 ~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      |+|+..|+. +++++|++.++. ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus        80 ~~A~~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  133 (165)
T 3twr_A           80 HNACSYGHY-EVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD  133 (165)
T ss_dssp             HHHHHTTCH-HHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHcCcH-HHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            888888885 888888888754 778888888888888888888888888888765

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=4.8e-28  Score=152.22  Aligned_cols=127  Identities=17%  Similarity=0.132  Sum_probs=104.7

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChH
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~   92 (150)
                      ....++|+.|+. .|+.+.++.|++.+.+  ++..+..|+||||+|+..++.+++++|++.|++     ++.+|..|.||
T Consensus        34 ~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~  105 (172)
T 3v30_A           34 ERGFTPLIWASA-FGEIETVRFLLEWGAD--PHILAKERESALSLASTGGYTDIVGLLLERDVD-----INIYDWNGGTP  105 (172)
T ss_dssp             TTSCCHHHHHHH-TTCHHHHHHHHHHTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-----TTCCCTTSCCH
T ss_pred             CCCCCHHHHHHH-cCCHHHHHHHHHcCCC--chhhcccCCCHHHHHHHCCCHHHHHHHHHcCCC-----CCCCCCCCCCH
Confidence            445567888888 8888888888887544  667788888888888888888888888888887     57788888888


Q ss_pred             HHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           93 LHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        93 l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ||+|+..|+. +++++|++.|+. ++.++..|.|||++|+..|+.+++++|+++|++
T Consensus       106 L~~A~~~~~~-~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (172)
T 3v30_A          106 LLYAVRGNHV-KCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENHILK  160 (172)
T ss_dssp             HHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCH-HHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence            8888888886 888888888855 888888888888888888888888888887753

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=5e-28  Score=151.47  Aligned_cols=125  Identities=17%  Similarity=0.070  Sum_probs=115.7

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHE   95 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~   95 (150)
                      .++||.|+. .|+.+.++.+++.+..  ++..|..|+||||+|+..++.+++++|++.|++     ++.++..|.||||+
T Consensus         4 ~t~L~~A~~-~g~~~~v~~ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~   75 (167)
T 3v31_A            4 SLSVHQLAA-QGEMLYLATRIEQENV--INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-----PQLLGKGRESALSL   75 (167)
T ss_dssp             CCCHHHHHH-TTCHHHHHHHHHHSSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHH
T ss_pred             cchHHHHHH-CCCHHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-----CCCcCCCCCcHHHH
Confidence            446999999 9999999999998644  778899999999999999999999999999988     57889999999999


Q ss_pred             HHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           96 TASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        96 a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |+..|+. +++++|++.++. ++.++..|.||||+|+..|+.+++++|+++|+.+
T Consensus        76 A~~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  128 (167)
T 3v31_A           76 ACSKGYT-DIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP  128 (167)
T ss_dssp             HHHHTCH-HHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHcCCH-HHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999996 999999999965 9999999999999999999999999999998763

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=2.6e-27  Score=149.87  Aligned_cols=123  Identities=19%  Similarity=0.164  Sum_probs=100.8

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETA   97 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~   97 (150)
                      +|+.|+. .|+.+.++.++...+. +++..+..|+||||+|+..++.+++++|++.|++     ++.++..|.||||+|+
T Consensus         8 ~l~~A~~-~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            8 DIFTQCR-EGNAVAVRLWLDNTEN-DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-----INVMNRGDDTPLHLAA   80 (179)
T ss_dssp             CHHHHHH-HTCHHHHHHHHHCTTS-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHH
T ss_pred             HHHHHHH-cCCHHHHHHHHhcCcc-cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHH
Confidence            4888888 8888888888876432 3667788888888888888888888888888877     5778888888888888


Q ss_pred             HcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           98 SSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        98 ~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ..|+. +++++|++.++. ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus        81 ~~~~~-~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  130 (179)
T 3f6q_A           81 SHGHR-DIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGAL  130 (179)
T ss_dssp             HTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HcCCH-HHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            88885 888888888854 888888888888888888888888888888875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.2e-27  Score=152.98  Aligned_cols=120  Identities=18%  Similarity=0.158  Sum_probs=60.6

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHH
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHET   96 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a   96 (150)
                      ++|+.|+. .|+.+.++.|+..+.+  ++..|..|+||||+|+..++.+++++|++.|++     ++.+|..|.||||+|
T Consensus        70 t~L~~A~~-~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A  141 (192)
T 2rfm_A           70 TALIWAVK-NNRLGIAEKLLSKGSN--VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN-----VNDRNLEGETPLIVA  141 (192)
T ss_dssp             CHHHHHHH-TTCHHHHHHHHHHTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----SSCCCTTCCCHHHHH
T ss_pred             cHHHHHHH-cCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHH
Confidence            34555555 5555555555544322  344444555555555555555555555555544     344555555555555


Q ss_pred             HHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Q 043390           97 ASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGK  146 (150)
Q Consensus        97 ~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~  146 (150)
                      +..|+. +++++|++.|+. ++.+|..|.|||++|+..|+.+++++|+++
T Consensus       142 ~~~~~~-~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          142 SKYGRS-EIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             HHHTCH-HHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHcCCH-HHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            555553 555555555433 555555555555555555555555555543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=4e-27  Score=147.99  Aligned_cols=124  Identities=18%  Similarity=0.118  Sum_probs=114.3

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETA   97 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~   97 (150)
                      +|+.|+. .|+.+.++.++..++. .++..+..|+||||+|+..++.+++++|++.|++     ++.++..|.||||+|+
T Consensus         5 ~L~~A~~-~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~   77 (172)
T 3v30_A            5 SIHQLAA-QGELDQLKEHLRKGDN-LVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-----PHILAKERESALSLAS   77 (172)
T ss_dssp             CHHHHHH-TTCHHHHHHHHTTCSG-GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-----TTCCCTTCCCHHHHHH
T ss_pred             hHHHHHH-cCCHHHHHHHHHcCcc-cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----chhhcccCCCHHHHHH
Confidence            4999999 9999999999998543 2667899999999999999999999999999998     6889999999999999


Q ss_pred             HcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           98 SSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        98 ~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      ..|+. +++++|++.++. ++.++..|.||||+|+..|+.+++++|+++|+.+
T Consensus        78 ~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  128 (172)
T 3v30_A           78 TGGYT-DIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADL  128 (172)
T ss_dssp             HTTCH-HHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HCCCH-HHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            99996 999999999965 9999999999999999999999999999998763

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=1.3e-27  Score=149.29  Aligned_cols=128  Identities=19%  Similarity=0.121  Sum_probs=114.5

Q ss_pred             hhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCC
Q 043390           10 DAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAG   89 (150)
Q Consensus        10 ~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g   89 (150)
                      ..+....++|+.|+. .|+.+.++.|++.+.+  ++..|..|+||||+|+..++.+++++|++.|++     ++.+|..|
T Consensus        37 ~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g  108 (165)
T 3twr_A           37 DIEGRQSTPLHFAAG-YNRVSVVEYLLQHGAD--VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV-----VNVADLWK  108 (165)
T ss_dssp             CTTTTCCCHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTC
T ss_pred             ccccCCCCHHHHHHH-cChHHHHHHHHhcCCC--CCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC-----CCCcCCCC
Confidence            334445678999999 9999999999998655  778899999999999999999999999999998     68899999


Q ss_pred             ChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390           90 NTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        90 ~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      .||||+|+..|+. +++++|++.|+. ++.+|..|.|||++|+. |+.+++++|+++|+
T Consensus       109 ~t~L~~A~~~~~~-~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          109 FTPLHEAAAKGKY-EICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CCHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCHHHHHHHcCCH-HHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            9999999999996 999999999965 99999999999999776 99999999999986

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=2.2e-27  Score=151.71  Aligned_cols=128  Identities=21%  Similarity=0.166  Sum_probs=117.5

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChH
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~   92 (150)
                      ....++|+.|+. .|+.+.++.|+..+.+  ++..+..|+||||+|+..++.+++++|++.|++     ++.+|..|.||
T Consensus        33 ~~g~t~L~~A~~-~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~  104 (192)
T 2rfm_A           33 SYNRTPLMVACM-LGMENAIDKLVENFDK--LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-----VNTKDFSGKTP  104 (192)
T ss_dssp             TTCCCHHHHHHH-HTCGGGHHHHHHHHCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-----TTCCCTTSCCH
T ss_pred             CCCCCHHHHHHH-cCCHHHHHHHHHhccc--cccccccCccHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCcH
Confidence            345667999999 9999999999998655  677899999999999999999999999999988     68899999999


Q ss_pred             HHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           93 LHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        93 l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      ||+|+..|+. +++++|++.++. ++.+|..|.||||+|+..|+.+++++|+++|+.+
T Consensus       105 L~~A~~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  160 (192)
T 2rfm_A          105 LMWSIIFGYS-EMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADI  160 (192)
T ss_dssp             HHHHHHHTCH-HHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCH-HHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            9999999996 999999999865 9999999999999999999999999999998763

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=2.3e-27  Score=147.62  Aligned_cols=124  Identities=18%  Similarity=0.289  Sum_probs=114.2

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      ..++|+.|+. .|+.+.++.+++.+.+  ++..+..|+||||+|+. ++.+++++|++.|++     ++.++..|.||||
T Consensus         5 ~~~~L~~A~~-~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~   75 (162)
T 1ihb_A            5 WGNELASAAA-RGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-----PDLKDRTGFAVIH   75 (162)
T ss_dssp             CHHHHHHHHH-HTCHHHHHHHTTSCCC--TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-----TTCCCTTSCCHHH
T ss_pred             HhhHHHHHHH-cCCHHHHHHHHhCCCC--ccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-----CCCCCCCCCCHHH
Confidence            4567999999 9999999999987544  67889999999999999 999999999999988     6889999999999


Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      +|+..|+. +++++|++.+.. ++.++..|.||||+|++.|+.+++++|+++|+.
T Consensus        76 ~A~~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A           76 DAARAGFL-DTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS  128 (162)
T ss_dssp             HHHHHTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             HHHHcCCH-HHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC
Confidence            99999996 999999999965 999999999999999999999999999999874

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=4.7e-27  Score=153.47  Aligned_cols=130  Identities=18%  Similarity=0.101  Sum_probs=99.6

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChH
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~   92 (150)
                      ....++++.|+. .|+.+.++.++..+...+++..+..|.||||+|+..++.+++++|++.|++     ++.++..|.||
T Consensus        70 ~~g~t~L~~A~~-~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~  143 (228)
T 2dzn_A           70 DSGWTPFHIACS-VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-----VRIKDKFNQIP  143 (228)
T ss_dssp             TTSCCHHHHHHH-HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----SCCCCTTSCCH
T ss_pred             CCCCCHHHHHHH-cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-----ccccCCCCCCH
Confidence            344556777777 777777777777654445666777777888888877778888888877776     57778888888


Q ss_pred             HHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHH-hccCC
Q 043390           93 LHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLA-GKNFR  149 (150)
Q Consensus        93 l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~-~~~~~  149 (150)
                      ||+|+..|+. +++++|++.+..+++.+|..|+||||+|+..|+.+++++|+ +.|+.
T Consensus       144 L~~A~~~~~~-~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~  200 (228)
T 2dzn_A          144 LHRAASVGSL-KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE  200 (228)
T ss_dssp             HHHHHHTTCH-HHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCH-HHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence            8888888885 88888888885557888888888888888888888888888 77765

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.2e-26  Score=143.32  Aligned_cols=122  Identities=22%  Similarity=0.128  Sum_probs=112.1

Q ss_pred             hhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCCh
Q 043390           12 KNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNT   91 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t   91 (150)
                      +....++++.|+. .|+.+.++.|++.+.+  ++..+..|+||||+|+..++.+++++|+++|++     ++.+|..|.|
T Consensus        31 ~~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t  102 (153)
T 1awc_B           31 DWLGTSPLHLAAQ-YGHFSTTEVLLRAGVS--RDARTKVDRTPLHMAASEGHANIVEVLLKHGAD-----VNAKDMLKMT  102 (153)
T ss_dssp             CTTCCCHHHHHHH-HTCHHHHHHHHTTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-----TTCCCTTSCC
T ss_pred             CCCCCCHHHHHHH-cCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCC-----CCCCCCCCCC
Confidence            4455678999999 9999999999987555  678899999999999999999999999999998     6889999999


Q ss_pred             HHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHH
Q 043390           92 ILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL  143 (150)
Q Consensus        92 ~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L  143 (150)
                      |||+|+..|+. +++++|++.|+. ++.+|..|.|||++|+..|+.+++++|
T Consensus       103 ~L~~A~~~~~~-~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          103 ALHWATEHNHQ-EVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCH-HHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999996 999999999865 999999999999999999999999987

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=1.9e-26  Score=142.73  Aligned_cols=119  Identities=22%  Similarity=0.205  Sum_probs=72.3

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      ..++++. +. .|+.+.++.|++.+.+  ++..|..|+||||+|+..|+.+++++|++.|++     ++.+|..|.||||
T Consensus        36 g~t~L~~-~~-~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~  106 (156)
T 1bd8_A           36 GKTALQV-MM-FGSTAIALELLKQGAS--PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-----VNVPDGTGALPIH  106 (156)
T ss_dssp             SCCHHHH-SC-TTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----SCCCCTTSCCHHH
T ss_pred             CCcHHHH-HH-cCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-----CCCcCCCCCcHHH
Confidence            3444555 55 5666666666655333  455566666666666666666666666666655     4556666666666


Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHh
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAG  145 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~  145 (150)
                      +|+..|+. +++++|++. + +++.+|..|.|||++|+..|+.+++++|++
T Consensus       107 ~A~~~~~~-~~v~~Ll~~-~-~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          107 LAVQEGHT-AVVSFLAAE-S-DLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHTCH-HHHHHHHTT-S-CTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHhChH-HHHHHHHhc-c-CCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            66666664 666666665 3 366666666666666666666666666654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.95  E-value=7e-27  Score=155.23  Aligned_cols=123  Identities=22%  Similarity=0.198  Sum_probs=67.7

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETA   97 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~   97 (150)
                      +|+.|+. .|+.+.++.|+..++ .+++..+..|.||||+|+..++.+++++|+..|++     ++.+|..|.||||+|+
T Consensus        93 ~L~~A~~-~~~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~d~~g~t~L~~A~  165 (253)
T 1yyh_A           93 PLHAAVS-ADAQGVFQILIRNRA-TDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-----VNAVDDLGKSALHWAA  165 (253)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHSTT-SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-----TTCBCTTSCBHHHHHH
T ss_pred             HHHHHHH-cCCHHHHHHHHHcCC-CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHH
Confidence            3444444 444444444443322 11333344444444444444444444444444444     4556666666666666


Q ss_pred             HcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           98 SSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        98 ~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ..|+. +++++|++.|+. ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus       166 ~~~~~-~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  215 (253)
T 1yyh_A          166 AVNNV-DAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFAN  215 (253)
T ss_dssp             HHTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HcCCH-HHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            66664 666666666644 666666667777777777777777777666654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=1.5e-26  Score=151.44  Aligned_cols=124  Identities=19%  Similarity=0.195  Sum_probs=76.2

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHE   95 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~   95 (150)
                      .++|+.|+. .|+.+.++.|+..+.+  ++..+..|.||||+|+..++.+++++|++.|.+     ++.++..|.||||+
T Consensus        74 ~t~L~~A~~-~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~L~~  145 (231)
T 3aji_A           74 WSPLHIAAS-AGXDEIVKALLVKGAH--VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-----PDAKDHYDATAMHR  145 (231)
T ss_dssp             CCHHHHHHH-HTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHH
T ss_pred             CCHHHHHHH-cCHHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCcHHHH
Confidence            344555555 5555555555554332  344455555555555555555555555555554     45566667777777


Q ss_pred             HHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           96 TASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        96 a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      |+..|+. +++++|++.++. ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus       146 A~~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  197 (231)
T 3aji_A          146 AAAKGNL-KMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS  197 (231)
T ss_dssp             HHHHTCH-HHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCH-HHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence            7777764 777777776644 666777777777777777777777777777664

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.95  E-value=2.5e-26  Score=154.72  Aligned_cols=125  Identities=21%  Similarity=0.185  Sum_probs=113.9

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCC----ccccccCCCcHHHHHHhh---CChHHHHHHHhhCCCCcccccccCCCCC
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHS----LCVFTIYDDTVLHVAAYT---KKSDLVMKLLDELPDQSLDKMTRQNKAG   89 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~----~~~~~~~g~~~L~~a~~~---~~~~~v~~ll~~~~~~~~~~~~~~~~~g   89 (150)
                      .+++.|+. .|+.+.+..++..+.+..    ++..+..|+||||+|+..   ++.+++++|+++|++     ++.+|..|
T Consensus       132 ~~l~~a~~-~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-----in~~d~~g  205 (278)
T 1dcq_A          132 HSLCEAVK-TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-----LDKQTGKG  205 (278)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-----TTCCCTTC
T ss_pred             hhhhhHhh-hcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-----ccccCCCC
Confidence            46899999 999999999999876643    445588899999999999   899999999999998     68899999


Q ss_pred             ChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           90 NTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        90 ~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      +||||+|+..|+. +++++|++.|++ ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus       206 ~TpLh~A~~~g~~-~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          206 STALHYCCLTDNA-ECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             CCHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHcCCH-HHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999996 999999999965 999999999999999999999999999998874

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=1.5e-26  Score=143.17  Aligned_cols=121  Identities=18%  Similarity=0.275  Sum_probs=112.1

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHE   95 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~   95 (150)
                      .++|+.|+. .|+.+.++.++.. ...+++..+..|+||||+ +..|+.+++++|++.|++     ++.+|..|.||||+
T Consensus         3 ~~~L~~A~~-~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~   74 (156)
T 1bd8_A            3 GDRLSGAAA-RGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-----PNVQDTSGTSPVHD   74 (156)
T ss_dssp             HHHHHHHHH-HTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHH
T ss_pred             chHHHHHHH-hCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-----CCCcCCCCCCHHHH
Confidence            356999999 9999999999998 545678889999999999 999999999999999998     68899999999999


Q ss_pred             HHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Q 043390           96 TASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGK  146 (150)
Q Consensus        96 a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~  146 (150)
                      |+..|+. +++++|++.|+. ++.+|..|.||||+|+..|+.+++++|+++
T Consensus        75 A~~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           75 AARTGFL-DTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             HHHTTCH-HHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHcCcH-HHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence            9999996 999999999965 999999999999999999999999999976

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=4.9e-27  Score=148.60  Aligned_cols=129  Identities=24%  Similarity=0.160  Sum_probs=118.5

Q ss_pred             hhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCCh
Q 043390           12 KNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNT   91 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t   91 (150)
                      +....++|+.|+. .|+.+.++.|+..+.+  ++..+..|+||||+|+..++.+++++|++.|++     ++.+|..|.|
T Consensus        36 ~~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~d~~g~t  107 (179)
T 3f6q_A           36 DDHGFSPLHWACR-EGRSAVVEMLIMRGAR--INVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-----INAVNEHGNV  107 (179)
T ss_dssp             CTTSCCHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCC
T ss_pred             CCCCCCHHHHHHH-cCcHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCC
Confidence            3445567999999 9999999999998655  778899999999999999999999999999998     6889999999


Q ss_pred             HHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           92 ILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        92 ~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |||+|+..|+. +++++|++.|+. ++.+|..|.|||++|+..++.+++++|+++|+++
T Consensus       108 ~L~~A~~~~~~-~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A          108 PLHYACFWGQD-QVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL  164 (179)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHcCCH-HHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence            99999999996 999999999965 9999999999999999999999999999999864

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=6.9e-27  Score=153.67  Aligned_cols=130  Identities=18%  Similarity=0.114  Sum_probs=68.6

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcc-cccccCCCCCChHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSL-DKMTRQNKAGNTIL   93 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~-~~~~~~~~~g~t~l   93 (150)
                      ..++|+.|+. .|+.+.++.|+..+.+  ++.++..|+||||+|+..++.+++++|+..+.++.. ..++..+..|.|||
T Consensus        45 g~t~L~~A~~-~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L  121 (236)
T 1ikn_D           45 QQTPLHLAVI-TNQPEIAEALLGAGCD--PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL  121 (236)
T ss_dssp             CCCHHHHHHH-TTCHHHHHCCCSCCCC--SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHH
T ss_pred             CCCHHHHHHH-cCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHH
Confidence            3444555555 5555555555554322  444555555555555555555555555555543211 11344555555555


Q ss_pred             HHHHHcCCcHHHHHHHHhhCCcccccccC-CCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           94 HETASSSHALPVADKLFRKAPGLLGMRNN-NGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        94 ~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~-~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      |+|+..|+. +++++|++.|+. ++.++. .|.||||+|+..|+.+++++|+++|+.
T Consensus       122 ~~A~~~~~~-~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  176 (236)
T 1ikn_D          122 HLASIHGYL-GIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD  176 (236)
T ss_dssp             HHHHHTTCH-HHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             HHHHHcCCH-HHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            555555553 555555555533 555554 555555555555555555555555543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.95  E-value=1.2e-26  Score=132.24  Aligned_cols=93  Identities=30%  Similarity=0.398  Sum_probs=86.9

Q ss_pred             CCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHH
Q 043390           50 YDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALL  129 (150)
Q Consensus        50 ~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~  129 (150)
                      +|+||||+|+..++.+++++|++.|++     ++.+|..|+||||+|+..|+. +++++|++.|+. ++.+|..|.||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~n~~d~~g~t~L~~A~~~~~~-~~v~~Ll~~ga~-~~~~d~~g~t~l~   73 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHL-EVVKLLLEAGAD-VNAKDKNGRTPLH   73 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-----CcccCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC-CCccCCCCCCHHH
Confidence            489999999999999999999999998     688999999999999999996 999999999965 9999999999999


Q ss_pred             HHHHcCCHHHHHHHHhccCC
Q 043390          130 GAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       130 ~a~~~g~~~~~~~L~~~~~~  149 (150)
                      +|+..|+.+++++|+++|+.
T Consensus        74 ~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           74 LAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999974

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.94  E-value=6.5e-27  Score=157.01  Aligned_cols=96  Identities=24%  Similarity=0.234  Sum_probs=62.2

Q ss_pred             cccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCC-CCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCC
Q 043390           47 FTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNK-AGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGG  125 (150)
Q Consensus        47 ~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~-~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~  125 (150)
                      .+..|+||||+|+..|+.+++++|++.|++     ++.++. .|.||||+|+..|+. +++++|++.|+. ++.+|..|.
T Consensus       154 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~~g~tpL~~A~~~~~~-~~v~~Ll~~gad-~~~~d~~g~  226 (282)
T 1oy3_D          154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-----LNKPEPTCGRTPLHLAVEAQAA-SVLELLLKAGAD-PTARMYGGR  226 (282)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-----TTCCCTTTCCCHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSC
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCcCHHHHHHHcCCH-HHHHHHHHcCCC-CcccccCCC
Confidence            444556666666666666666666666655     345553 367777777777774 777777777644 666777777


Q ss_pred             CHHHHHHHcCCHHHHHHHHhccCC
Q 043390          126 TALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       126 tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ||||+|+..|+.+++++|+++|+.
T Consensus       227 tpL~~A~~~~~~~~v~~Ll~~ga~  250 (282)
T 1oy3_D          227 TPLGSALLRPNPILARLLRAHGAP  250 (282)
T ss_dssp             CHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHcCCcHHHHHHHHcCCC
Confidence            777777777777777777777664

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.94  E-value=2.3e-26  Score=149.81  Aligned_cols=61  Identities=18%  Similarity=0.082  Sum_probs=24.0

Q ss_pred             CCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 043390           85 QNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKN  147 (150)
Q Consensus        85 ~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~  147 (150)
                      +|..|.||||+|+..|+. +++++|++.++. ++.++..|.||+++|++.++.+++++|+++|
T Consensus       154 ~~~~g~t~L~~A~~~~~~-~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g  214 (223)
T 2f8y_A          154 QNNREETPLFLAAREGSY-ETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYN  214 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCH-HHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCCCcCHHHHHHHcCCH-HHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence            333334444444443332 344444433322 3333333444444444444444444444333

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=2.4e-26  Score=147.58  Aligned_cols=128  Identities=18%  Similarity=0.216  Sum_probs=73.4

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHH
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTIL   93 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l   93 (150)
                      ...++|+.|+. .|+.+.++.|++.+.+  ++..+..|+||||+|+..++.+++++|+..+..    +++.++..|.|||
T Consensus        38 ~g~t~L~~A~~-~~~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~----~~~~~~~~g~t~L  110 (201)
T 3hra_A           38 EGNTPLNIAVH-NNDIEIAKALIDRGAD--INLQNSISDSPYLYAGAQGRTEILAYMLKHATP----DLNKHNRYGGNAL  110 (201)
T ss_dssp             TSCCHHHHHHH-HTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC----CTTCCCTTSCCSH
T ss_pred             CCCCHHHHHHH-cCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCc----ccccccCCCCcHH
Confidence            33445666666 6666666666665433  455566666666666666666666666643322    1455555556666


Q ss_pred             HHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCC-----HHHHHHHHhccCC
Q 043390           94 HETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGK-----IEIFNFLAGKNFR  149 (150)
Q Consensus        94 ~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~-----~~~~~~L~~~~~~  149 (150)
                      |+|+..|+. +++++|++.+..+++.++..|+||||+|+..+.     .+++++|+++|+.
T Consensus       111 ~~A~~~~~~-~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~  170 (201)
T 3hra_A          111 IPAAEKGHI-DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD  170 (201)
T ss_dssp             HHHHHTTCH-HHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCH-HHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC
Confidence            666665554 566666655533455555555666666655554     5555666555543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=1.4e-27  Score=145.05  Aligned_cols=128  Identities=17%  Similarity=0.075  Sum_probs=112.2

Q ss_pred             hhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCC
Q 043390           11 AKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGN   90 (150)
Q Consensus        11 ~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~   90 (150)
                      .+....++||.|+. .|+.+.++.|+..+.+  ++..|..|+||||+|+..++.+++++|++.|++     ++.+|..|.
T Consensus         6 ~~~~g~t~L~~A~~-~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~   77 (137)
T 3c5r_A            6 TNHRGETLLHIASI-KGDIPSVEYLLQNGSD--PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-----VNTTGYQND   77 (137)
T ss_dssp             CCTTCCCHHHHHHH-HTCHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCGGGC
T ss_pred             cCCCCCCHHHHHHH-cCCHHHHHHHHHcCCC--CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-----ccCcCCCCC
Confidence            34556678999999 9999999999998554  678899999999999999999999999999998     688999999


Q ss_pred             hHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390           91 TILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        91 t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      ||||+|+..|+. +++++|++.|+. ++.+|..|.|||++|+..+..+++++|.+.+.
T Consensus        78 t~L~~A~~~~~~-~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           78 SPLHDAAKNGHV-DIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             CHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             CHHHHHHHcCCH-HHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            999999999996 999999999865 99999999999999999999999988876653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=5.6e-27  Score=153.86  Aligned_cols=125  Identities=18%  Similarity=0.154  Sum_probs=114.2

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      ..+.|+.|+. .|+.+.++.|+..+.+  ++..|..|+||||+|+..|+.+++++|++.|++     ++.+|..|+||||
T Consensus        21 ~~t~L~~A~~-~g~~~~v~~Ll~~g~~--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-----~n~~d~~g~tpLh   92 (229)
T 2vge_A           21 PLVLLLDAAL-TGELEVVQQAVKEMND--PSQPNEEGITALHNAICGANYSIVDFLITAGAN-----VNSPDSHGWTPLH   92 (229)
T ss_dssp             HHHHHHHHHH-HTCHHHHHHHHHHSSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHH
T ss_pred             hhHHHHHHHH-cCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCCHHH
Confidence            3456999999 9999999999998655  678899999999999999999999999999998     6889999999999


Q ss_pred             HHHHcCCcHHHHHHHHhhCCccccccc-CCCCCHHHHH--HHcCCHHHHHHHHhccCC
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRN-NNGGTALLGA--AHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~-~~g~tpl~~a--~~~g~~~~~~~L~~~~~~  149 (150)
                      +|+..|+. +++++|++.|+. ++.++ ..|+||||+|  +..|+.+++++|+++|+.
T Consensus        93 ~A~~~g~~-~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~  148 (229)
T 2vge_A           93 CAASCNDT-VICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADVEQS  148 (229)
T ss_dssp             HHHHTTCH-HHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHcCCH-HHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC
Confidence            99999996 999999999966 88876 6999999999  999999999999998864

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.94  E-value=4.1e-26  Score=148.63  Aligned_cols=137  Identities=20%  Similarity=0.175  Sum_probs=121.4

Q ss_pred             cccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccc
Q 043390            4 IGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMT   83 (150)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~   83 (150)
                      .|.+....+....++|+.|+. .|+.+.++.|+...+. .++..+..|.||||+|+..++.+++++|++.|++     ++
T Consensus        47 ~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~  119 (223)
T 2f8y_A           47 ASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-----VN  119 (223)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHBTTS-CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----TT
T ss_pred             cCCCCCCcCCCCCCHHHHHHH-cCCHHHHHHHHHcCCC-CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-----Cc
Confidence            344444445566778999999 9999999999987542 3677899999999999999999999999999998     68


Q ss_pred             cCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           84 RQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        84 ~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      .++..|.||||+|+..|+. +++++|++.++. ++.++..|.||||+|++.|+.+++++|+++|+.
T Consensus       120 ~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  183 (223)
T 2f8y_A          120 AVDDLGKSALHWAAAVNNV-DAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFAN  183 (223)
T ss_dssp             CBCTTSCBHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CcCCCCCcHHHHHHHcCCH-HHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            8999999999999999996 999999999865 999999999999999999999999999999875

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.94  E-value=4.6e-26  Score=151.30  Aligned_cols=130  Identities=15%  Similarity=0.098  Sum_probs=118.1

Q ss_pred             hhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCCh
Q 043390           12 KNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNT   91 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t   91 (150)
                      +....++|+.|+. .|+.+.++.|++.+.+  ++..+..|+||||+|+..++.+++++|+..+..    +++.++..|.|
T Consensus        54 d~~g~t~L~~A~~-~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~~g~t  126 (253)
T 1yyh_A           54 DRTGETALHLAAR-YSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT----DLDARMHDGTT  126 (253)
T ss_dssp             CTTSCCHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTS----CTTCCCTTCCC
T ss_pred             CCCCCcHHHHHHH-cCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CccccCCCCCc
Confidence            3455678999999 9999999999998655  778899999999999999999999999999874    26889999999


Q ss_pred             HHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           92 ILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        92 ~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |||+|+..|+. +++++|++.++. ++.++..|.||||+|+..|+.+++++|+++|+.+
T Consensus       127 ~L~~A~~~~~~-~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  183 (253)
T 1yyh_A          127 PLILAARLAVE-GMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK  183 (253)
T ss_dssp             HHHHHHHHTCS-SHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcChH-HHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999997 999999999865 9999999999999999999999999999999763

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=4.6e-27  Score=155.07  Aligned_cols=127  Identities=19%  Similarity=0.114  Sum_probs=111.8

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChH
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~   92 (150)
                      ....+.|+.|+. .|+.+.++.|+..+.+  ++..|..|+||||+|+..|+.+++++|+.+|++     ++.+|..|+||
T Consensus        35 ~~~~t~L~~A~~-~g~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~d~~g~tp  106 (239)
T 1ycs_B           35 PLPLALLLDSSL-EGEFDLVQRIIYEVDD--PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-----VNAADSDGWTP  106 (239)
T ss_dssp             --CHHHHHHHHH-HTCHHHHHHHTSTTSS--CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-----TTCCCTTCCCH
T ss_pred             chhhHHHHHHHH-cCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCCH
Confidence            334567999999 9999999999988654  778899999999999999999999999999988     68899999999


Q ss_pred             HHHHHHcCCcHHHHHHHHhhCCcccccccCCCC-CHHHHH--HHcCCHHHHHHHHhccCC
Q 043390           93 LHETASSSHALPVADKLFRKAPGLLGMRNNNGG-TALLGA--AHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        93 l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~-tpl~~a--~~~g~~~~~~~L~~~~~~  149 (150)
                      ||+|+..|+. +++++|++.|++ ++.++..|. ||||+|  +..|+.+++++|+++|++
T Consensus       107 L~~A~~~~~~-~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~  164 (239)
T 1ycs_B          107 LHCAASCNNV-QVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK  164 (239)
T ss_dssp             HHHHHHTTCH-HHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCH-HHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhc
Confidence            9999999996 999999999965 888888776 999999  788999999999988764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.94  E-value=5.4e-26  Score=148.93  Aligned_cols=131  Identities=23%  Similarity=0.271  Sum_probs=113.2

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHE   95 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~   95 (150)
                      .++||.|+. .|+.+.++.++... +.+++.+|..|+||||+|+..|+.+++++|++.|++......+.+|..|.||||+
T Consensus         4 ~t~L~~A~~-~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            4 ESPLLLAAK-ENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             TCHHHHHHH-TTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCHHHHHHH-cCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            457999999 99999999999872 2347788999999999999999999999999999874222336678899999999


Q ss_pred             HHHcCCcHHHHHHHHhhCCcccccccC-------------CCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           96 TASSSHALPVADKLFRKAPGLLGMRNN-------------NGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        96 a~~~g~~~~~~~~Ll~~~~~~~~~~~~-------------~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |+..|+. +++++|++.++. ++.++.             .|.||||+|+..|+.+++++|+++|+.+
T Consensus        82 A~~~~~~-~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  147 (232)
T 2rfa_A           82 AVINQNV-NLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI  147 (232)
T ss_dssp             HHHTTCH-HHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHcCCH-HHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            9999996 999999999865 777655             7999999999999999999999999863

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.94  E-value=3.1e-26  Score=157.72  Aligned_cols=135  Identities=21%  Similarity=0.223  Sum_probs=120.6

Q ss_pred             cccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccC
Q 043390            6 IEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQ   85 (150)
Q Consensus         6 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~   85 (150)
                      ......+....+.|+.|+. .|+.+.+++++... ..+++..|..|+||||+|+..|+.+++++|++.|++     ++.+
T Consensus        15 ~~~~~~~~~~~~~L~~A~~-~g~~~~v~~ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~   87 (351)
T 3utm_A           15 AKAVLTGEYKKDELLEAAR-SGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-----VHAK   87 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HTCHHHHHHHCCTT-TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCC
T ss_pred             eeeeeeccccchhHHHHHH-cCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCcc
Confidence            3344445566778999999 99999999999863 344778899999999999999999999999999998     6889


Q ss_pred             CCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           86 NKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        86 ~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      |..|.||||+|+..|+. +++++|++.++. ++..+..|.||||+|+..|+.+++++|+++|+.
T Consensus        88 ~~~g~t~L~~A~~~g~~-~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  149 (351)
T 3utm_A           88 DKGGLVPLHNACSYGHY-EVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD  149 (351)
T ss_dssp             CTTCCCHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCcHHHHHHHCCCH-HHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999996 999999999965 999999999999999999999999999999875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=2.6e-26  Score=153.89  Aligned_cols=127  Identities=23%  Similarity=0.321  Sum_probs=113.7

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCcccccc--------------CCCcHHHHHHhhCChHHHHHHHh---hCC
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTI--------------YDDTVLHVAAYTKKSDLVMKLLD---ELP   75 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~--------------~g~~~L~~a~~~~~~~~v~~ll~---~~~   75 (150)
                      ....++||.|+. .|+.+.++.|++.+.+  ++..+.              .|+||||+|+..|+.+++++|++   .|+
T Consensus        99 ~~g~tpL~~A~~-~g~~~~v~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga  175 (273)
T 2pnn_A           99 YKGQTALHIAIE-RRNMTLVTLLVENGAD--VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA  175 (273)
T ss_dssp             TTTCCHHHHHHH-TTCHHHHHHHHHTTCC--TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             CCCCCHHHHHHH-cCCHHHHHHHHHCCCC--cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence            456678999999 9999999999998655  556665              79999999999999999999999   888


Q ss_pred             CCcccccccCCCCCChHHHHHHHcCC---------cHHHHHHHHhhCCcccc-------cccCCCCCHHHHHHHcCCHHH
Q 043390           76 DQSLDKMTRQNKAGNTILHETASSSH---------ALPVADKLFRKAPGLLG-------MRNNNGGTALLGAAHNGKIEI  139 (150)
Q Consensus        76 ~~~~~~~~~~~~~g~t~l~~a~~~g~---------~~~~~~~Ll~~~~~~~~-------~~~~~g~tpl~~a~~~g~~~~  139 (150)
                      +     ++.+|..|+||||+|+..|+         . +++++|++.|+. ++       .+|..|.||||+|++.|+.++
T Consensus       176 d-----~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~-~~v~~Ll~~ga~-~n~~~~~~~~~d~~g~TpL~~A~~~g~~~i  248 (273)
T 2pnn_A          176 D-----ISARDSVGNTVLHALVEVADNTVDNTKFVT-SMYNEILILGAK-LHPTLKLEEITNRKGLTPLALAASSGKIGV  248 (273)
T ss_dssp             C-----TTCCCTTSCCHHHHHHHHCCSCHHHHHHHH-HHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             C-----ceeeCCCCCcHHHHHHHccCcchhHHHHHH-HHHHHHHHhhhh-cccccccccccCCCCCCHHHHHHHhChHHH
Confidence            8     68899999999999999887         5 899999999865 65       589999999999999999999


Q ss_pred             HHHHHhccCC
Q 043390          140 FNFLAGKNFR  149 (150)
Q Consensus       140 ~~~L~~~~~~  149 (150)
                      +++|+++|++
T Consensus       249 v~~Ll~~ga~  258 (273)
T 2pnn_A          249 LAYILQREIH  258 (273)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHCCCC
Confidence            9999999984

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=2.7e-26  Score=152.48  Aligned_cols=126  Identities=30%  Similarity=0.349  Sum_probs=113.3

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccC-------------CCcHHHHHHhhCChHHHHHHHh---hCCC
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIY-------------DDTVLHVAAYTKKSDLVMKLLD---ELPD   76 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~-------------g~~~L~~a~~~~~~~~v~~ll~---~~~~   76 (150)
                      ....++||.|+. .|+.+.++.|++.+.+  ++..+..             |+||||+|+..|+.+++++|++   .|++
T Consensus        88 ~~g~t~L~~A~~-~g~~~~v~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~  164 (256)
T 2etb_A           88 YQGHSALHIAIE-KRSLQCVKLLVENGAD--VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS  164 (256)
T ss_dssp             TTTCCHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             ccCCCHHHHHHH-cCCHHHHHHHHHcCCC--CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC
Confidence            446678999999 9999999999998655  5566665             9999999999999999999999   8888


Q ss_pred             CcccccccCCCCCChHHHHHHH--cCCcHH-------HHHHHHhhCCccc-------ccccCCCCCHHHHHHHcCCHHHH
Q 043390           77 QSLDKMTRQNKAGNTILHETAS--SSHALP-------VADKLFRKAPGLL-------GMRNNNGGTALLGAAHNGKIEIF  140 (150)
Q Consensus        77 ~~~~~~~~~~~~g~t~l~~a~~--~g~~~~-------~~~~Ll~~~~~~~-------~~~~~~g~tpl~~a~~~g~~~~~  140 (150)
                           ++.+|..|+||||+|+.  .++. +       ++++|++.|+. +       +.+|..|.||||+|++.|+.+++
T Consensus       165 -----~n~~d~~g~TpLh~A~~~~~~~~-~~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v  237 (256)
T 2etb_A          165 -----LEATDSLGNTVLHALVMIADNSP-ENSALVIHMYDGLLQMGAR-LCPTVQLEEISNHQGLTPLKLAAKEGKIEIF  237 (256)
T ss_dssp             -----TTCCCTTSCCHHHHHHHHCCSCH-HHHHHHHHHHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             -----cCccCCCCCCHHHHHHHcccCCc-hhhHHHHHHHHHHHHcCCC-cccccccccccCCCCCCHHHHHHHhCCHHHH
Confidence                 68899999999999998  6775 7       99999999965 7       88999999999999999999999


Q ss_pred             HHHHhccC
Q 043390          141 NFLAGKNF  148 (150)
Q Consensus       141 ~~L~~~~~  148 (150)
                      ++|+++|.
T Consensus       238 ~~Ll~~g~  245 (256)
T 2etb_A          238 RHILQREF  245 (256)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhCCC
Confidence            99999885

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=2.6e-26  Score=152.82  Aligned_cols=125  Identities=28%  Similarity=0.391  Sum_probs=112.3

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccc--------------cCCCcHHHHHHhhCChHHHHHHHh---hCCC
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFT--------------IYDDTVLHVAAYTKKSDLVMKLLD---ELPD   76 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~--------------~~g~~~L~~a~~~~~~~~v~~ll~---~~~~   76 (150)
                      ...++||.|+. .|+.+.++.|++.+.+  ++..+              ..|+||||+|+..|+.+++++|++   .|++
T Consensus        92 ~g~t~L~~A~~-~g~~~~v~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~  168 (260)
T 3jxi_A           92 RGQTALHIAIE-RRCKHYVELLVEKGAD--VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD  168 (260)
T ss_dssp             ESBCHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             CCCCHHHHHHH-cCCHHHHHHHHhCCCC--cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC
Confidence            45567999999 9999999999998655  55666              579999999999999999999999   8888


Q ss_pred             CcccccccCCCCCChHHHHHHHcCC---------cHHHHHHHHhhCCccc-------ccccCCCCCHHHHHHHcCCHHHH
Q 043390           77 QSLDKMTRQNKAGNTILHETASSSH---------ALPVADKLFRKAPGLL-------GMRNNNGGTALLGAAHNGKIEIF  140 (150)
Q Consensus        77 ~~~~~~~~~~~~g~t~l~~a~~~g~---------~~~~~~~Ll~~~~~~~-------~~~~~~g~tpl~~a~~~g~~~~~  140 (150)
                           ++.+|..|+||||+|+..++         . +++++|++.|+. +       +.+|..|.||||+|++.|+.+++
T Consensus       169 -----~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~-~~v~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v  241 (260)
T 3jxi_A          169 -----LRRQDSRGNTVLHALVAIADNTRENTKFVT-KMYDLLLIKCAK-LFPDTNLEALLNNDGLSPLMMAAKTGKIGIF  241 (260)
T ss_dssp             -----TTCCCTTSCCHHHHHHHHCCSSHHHHHHHH-HHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             -----CcccCCCCCcHHHHHHHhccCchhHHHHHH-HHHHHHHHhCcc-cccccchhhcccCCCCCHHHHHHHcCCHHHH
Confidence                 68899999999999998877         4 899999999865 6       67999999999999999999999


Q ss_pred             HHHHhccC
Q 043390          141 NFLAGKNF  148 (150)
Q Consensus       141 ~~L~~~~~  148 (150)
                      ++|+++|.
T Consensus       242 ~~Ll~~g~  249 (260)
T 3jxi_A          242 QHIIRREI  249 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhCC
Confidence            99999885

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.94  E-value=7.4e-26  Score=147.77  Aligned_cols=130  Identities=18%  Similarity=0.162  Sum_probs=114.0

Q ss_pred             hhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccc-cccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCC
Q 043390           12 KNKINSELYNALMIKQDEQKVIELCRKVPDHSLCV-FTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGN   90 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~-~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~   90 (150)
                      +....++|+.|+. .|+.+.++.|+..+++.+++. .+..|+||||+|+..++.+++++|++.|...   +++.++..|.
T Consensus        33 ~~~g~t~L~~A~~-~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~~~g~  108 (228)
T 2dzn_A           33 DQDGRIPLHWSVS-FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP---DLNKITNQGV  108 (228)
T ss_dssp             CTTSCCHHHHHHH-TTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCC---CTTCCCTTCC
T ss_pred             CCCCCCHHHHHHH-cCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc---ccccCCcCCC
Confidence            4455667999999 999999999999876655666 7889999999999999999999999998322   2678899999


Q ss_pred             hHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 043390           91 TILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKN  147 (150)
Q Consensus        91 t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~  147 (150)
                      ||||+|+..|+. +++++|++.|.. ++.++..|.||||+|+..|+.+++++|++.|
T Consensus       109 t~L~~A~~~~~~-~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  163 (228)
T 2dzn_A          109 TCLHLAVGKKWF-EVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLG  163 (228)
T ss_dssp             CHHHHHHHTTCH-HHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             CHHHHHHHcCCH-hHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999996 999999999865 9999999999999999999999999999988

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=1.2e-25  Score=144.23  Aligned_cols=125  Identities=24%  Similarity=0.220  Sum_probs=70.7

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhC-CCCcccccccCCCCCChH
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDEL-PDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~-~~~~~~~~~~~~~~g~t~   92 (150)
                      ...++++.|+. .|+.+.++.|+.... .+++..+..|.||||+|+..++.+++++|++.| .+     ++.+|..|.||
T Consensus        71 ~g~t~l~~A~~-~~~~~~~~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~~~~~~~g~t~  143 (201)
T 3hra_A           71 ISDSPYLYAGA-QGRTEILAYMLKHAT-PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED-----IDFQNDFGYTA  143 (201)
T ss_dssp             TSCCHHHHHHH-TTCHHHHHHHHHHSC-CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC-----TTCCCTTSCCH
T ss_pred             CCCCHHHHHHH-cCCHHHHHHHHhccC-cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----cCCCCCCCCCH
Confidence            33445666665 666665555554322 224455555666666666666666666666655 33     45555566666


Q ss_pred             HHHHHHcCC-----cHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 043390           93 LHETASSSH-----ALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKN  147 (150)
Q Consensus        93 l~~a~~~g~-----~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~  147 (150)
                      ||+|+..++     . +++++|++.|+. ++.+|..|.|||++|++.|+.+++++|+++|
T Consensus       144 L~~A~~~~~~~~~~~-~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          144 LIEAVGLREGNQLYQ-DIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHSSCCSHHHH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHhccchhhHH-HHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            666665554     3 566666666543 5556666666666666666666666666554

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.94  E-value=6.2e-26  Score=149.11  Aligned_cols=140  Identities=16%  Similarity=0.076  Sum_probs=123.2

Q ss_pred             CCcccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCC----CCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCC
Q 043390            2 SSIGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPD----HSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQ   77 (150)
Q Consensus         2 ~s~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~----~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~   77 (150)
                      +..|.+....+....++|+.|+. .|+.+.++.|+..+..    ..++..+..|.||||+|+..++.+++++|++.|++ 
T Consensus        65 l~~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-  142 (236)
T 1ikn_D           65 LGAGCDPELRDFRGNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-  142 (236)
T ss_dssp             CSCCCCSCCCCTTCCCHHHHHHH-HTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHH-cCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence            44555555555666778999999 9999999999988653    22466788999999999999999999999999998 


Q ss_pred             cccccccCCC-CCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           78 SLDKMTRQNK-AGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        78 ~~~~~~~~~~-~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                          ++.++. .|.||||+|+..|+. +++++|++.|+. ++.+|..|.|||++|+..|+.+++++|+++|++
T Consensus       143 ----~~~~~~~~g~tpL~~A~~~~~~-~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  209 (236)
T 1ikn_D          143 ----VNAQEPCNGRTALHLAVDLQNP-DLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  209 (236)
T ss_dssp             ----TTCCCTTTCCCHHHHHHHTTCH-HHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             ----CCCCCCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHcchh
Confidence                678887 999999999999996 999999999865 999999999999999999999999999999974

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=8.8e-26  Score=148.45  Aligned_cols=129  Identities=18%  Similarity=0.168  Sum_probs=90.1

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCC--CCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCC-CCC
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPD--HSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQN-KAG   89 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~--~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~-~~g   89 (150)
                      ....++++.|+. .|+.+.++.++...+.  .+++..+..|.||||+|+..++.+++++|++.|.+     ++..+ ..|
T Consensus        77 ~~g~t~l~~A~~-~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~~g  150 (241)
T 1k1a_A           77 RHGQTAAHLACE-HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD-----IDAVDIKSG  150 (241)
T ss_dssp             TTSCCHHHHHHH-TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTTC
T ss_pred             CCCCCHHHHHHH-cCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-----cccccccCC
Confidence            334455666666 6666666666666442  13445566667777777777777777777777666     45556 677


Q ss_pred             ChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           90 NTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        90 ~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      .||||+|+..|+. +++++|++.|+. ++.++..|.||||+|+..|+.+++++|+++|+.
T Consensus       151 ~t~L~~A~~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  208 (241)
T 1k1a_A          151 RSPLIHAVENNSL-SMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD  208 (241)
T ss_dssp             CCHHHHHHHTTCH-HHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHcCCH-HHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            8888888888885 888888887754 777788888888888888888888888887765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=2e-26  Score=137.53  Aligned_cols=116  Identities=20%  Similarity=0.147  Sum_probs=102.5

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHH
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTIL   93 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l   93 (150)
                      ...++|+.|+. .|+.+.++.++..+.+  ++..|..|+||||+|+..++.+++++|++.|++     ++.+|..|+|||
T Consensus         6 ~~~~~l~~A~~-~~~~~~v~~ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~d~~g~tpL   77 (123)
T 3aaa_C            6 MCDKEFMWALK-NGDLDEVKDYVAKGED--VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-----INAPDKHHITPL   77 (123)
T ss_dssp             -CHHHHHHHHH-TTCHHHHHHHHHTTCC--TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-----TTCCCTTSCCHH
T ss_pred             ccchHHHHHHH-cCCHHHHHHHHHcCCC--cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCcCCCCCCCHH
Confidence            34467999999 9999999999998654  778899999999999999999999999999998     688999999999


Q ss_pred             HHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHH
Q 043390           94 HETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEI  139 (150)
Q Consensus        94 ~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~  139 (150)
                      |+|+..|+. +++++|++.++. ++.+|..|.|||++|...+..++
T Consensus        78 ~~A~~~~~~-~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           78 LSAVYEGHV-SCVKLLLSKGAD-KTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             HHHHHHTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             HHHHHcCCH-HHHHHHHHcCCC-CCCcCCCCCCHHHHhCCHHHHHH
Confidence            999999996 999999999865 99999999999999954444333

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.94  E-value=7.8e-26  Score=148.18  Aligned_cols=137  Identities=17%  Similarity=0.140  Sum_probs=117.0

Q ss_pred             ccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCC---ccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccc
Q 043390            5 GIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHS---LCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDK   81 (150)
Q Consensus         5 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~---~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~   81 (150)
                      |.+....+....++|+.|+. .|+.+.++.|++.+++..   .+..|..|+||||+|+..|+.+++++|++.|+++    
T Consensus        27 g~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----  101 (232)
T 2rfa_A           27 GCEVHQRGAMGETALHIAAL-YDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV----  101 (232)
T ss_dssp             CSCTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT----
T ss_pred             CCCcccCCCCCCCHHHHHHH-cCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC----
Confidence            44444445566778999999 999999999999865521   2456789999999999999999999999999984    


Q ss_pred             cccCC-------------CCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHH----HHHH
Q 043390           82 MTRQN-------------KAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIF----NFLA  144 (150)
Q Consensus        82 ~~~~~-------------~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~----~~L~  144 (150)
                       +.++             ..|.||||+|+..|+. +++++|++.|++ ++.+|..|.||||+|+..|+.+++    ++|+
T Consensus       102 -~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll  178 (232)
T 2rfa_A          102 -SARATGSVFHYRPHNLIYYGEHPLSFAACVGSE-EIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLL  178 (232)
T ss_dssp             -TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             -CcccCCcceeecccccccCCCCHHHHHHHcCCH-HHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHH
Confidence             4443             4799999999999996 999999999865 999999999999999999999988    9999


Q ss_pred             hccCC
Q 043390          145 GKNFR  149 (150)
Q Consensus       145 ~~~~~  149 (150)
                      ++|+.
T Consensus       179 ~~g~~  183 (232)
T 2rfa_A          179 SYDGG  183 (232)
T ss_dssp             HTTCS
T ss_pred             hcCCc
Confidence            98873

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.94  E-value=1.1e-25  Score=147.75  Aligned_cols=128  Identities=21%  Similarity=0.100  Sum_probs=93.8

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChH
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~   92 (150)
                      ....++++.|+. .|+.+.++.|+..++ .+++..+..|+||||+|+..++.+++++|++.|++     ++.++..|.||
T Consensus        75 ~~g~t~L~~A~~-~~~~~~~~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~  147 (237)
T 3b7b_A           75 AEGSTCLHLAAK-KGHYEVVQYLLSNGQ-MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-----INIRDNEENIC  147 (237)
T ss_dssp             TTSCCHHHHHHH-TTCHHHHHHHHTTTC-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCH
T ss_pred             CCCCcHHHHHHH-cCCHHHHHHHHhCCC-CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCccCCCCCCH
Confidence            344455777777 777777766666542 23555667777777777777777777777777776     56777788888


Q ss_pred             HHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           93 LHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        93 l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ||+|+..|+. +++++|++.++. ++.+|..|.||||+|++.|+.+++++|+++|+.
T Consensus       148 L~~A~~~~~~-~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad  202 (237)
T 3b7b_A          148 LHWAAFSGCV-DIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD  202 (237)
T ss_dssp             HHHHHHHCCH-HHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             HHHHHHCCCH-HHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC
Confidence            8888888885 888888888754 777888888888888888888888888888765

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=6.8e-26  Score=153.41  Aligned_cols=133  Identities=22%  Similarity=0.156  Sum_probs=101.5

Q ss_pred             hhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccc----------
Q 043390           12 KNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDK----------   81 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~----------   81 (150)
                      +....++||.|+. .|+.+.++.|+..+.+  ++..|..|+||||+|+..|+.+++++|+..|++++..+          
T Consensus        70 ~~~g~t~L~~A~~-~g~~~~v~~Ll~~ga~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  146 (299)
T 1s70_B           70 NVDGLTALHQACI-DDNVDMVKFLVENGAN--INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA  146 (299)
T ss_dssp             CTTCCBHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             CCCCCCHHHHHHH-cCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence            3445566888888 8888888888876544  66677788888888888888888888888877642100          


Q ss_pred             ---------------------------------------------cccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcc
Q 043390           82 ---------------------------------------------MTRQNKAGNTILHETASSSHALPVADKLFRKAPGL  116 (150)
Q Consensus        82 ---------------------------------------------~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~  116 (150)
                                                                   ....+..|.||||+|+..|+. +++++|++.|+. 
T Consensus       147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~g~d-  224 (299)
T 1s70_B          147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYT-EVLKLLIQARYD-  224 (299)
T ss_dssp             CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH-HHHHHHHTTTCC-
T ss_pred             HhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcH-HHHHHHHHcCCC-
Confidence                                                         001335678888888888886 888988888855 


Q ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390          117 LGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       117 ~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ++.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus       225 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad  257 (299)
T 1s70_B          225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCD  257 (299)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Confidence            888888899999999999999999999988875

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=1.5e-25  Score=142.38  Aligned_cols=124  Identities=23%  Similarity=0.238  Sum_probs=109.0

Q ss_pred             hhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCC-CCCC
Q 043390           12 KNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQN-KAGN   90 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~-~~g~   90 (150)
                      +....++||.|+. .|+.+.++.++. +.  +++..|..|+||||+|+..|+.+++++|++.|++     ++.++ ..|+
T Consensus        41 ~~~g~t~L~~A~~-~g~~~~v~~Ll~-~~--~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-----~~~~~~~~g~  111 (183)
T 3deo_A           41 VSEYETPWWTAAR-KADEQALSQLLE-DR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-----LDHRDMRGGL  111 (183)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHTT-TS--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCSSSSC
T ss_pred             CCCCCCHHHHHHH-cCCHHHHHHHHh-cC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCcCCCCCCC
Confidence            3455677999999 999999999998 43  4778899999999999999999999999999998     57777 8999


Q ss_pred             hHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHc----------------CCHHHHHHHHhc
Q 043390           91 TILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHN----------------GKIEIFNFLAGK  146 (150)
Q Consensus        91 t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~----------------g~~~~~~~L~~~  146 (150)
                      ||||+|+..|+. +++++|++.|+. ++.+|..|.||||+|++.                |+.+++++|.++
T Consensus       112 tpL~~A~~~~~~-~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          112 TALHMAAGYVRP-EVVEALVELGAD-IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CHHHHHHHTTCH-HHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHhcCcH-HHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence            999999999996 999999999965 999999999999998876                566777777664

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=6e-27  Score=157.06  Aligned_cols=133  Identities=23%  Similarity=0.186  Sum_probs=110.9

Q ss_pred             ccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCccccccc
Q 043390            5 GIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTR   84 (150)
Q Consensus         5 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~   84 (150)
                      +++....+....++++.++. .++.+.++.|+..+.+  ++.+|..|+||||+|+..|+.+++++|++.|++     ++.
T Consensus       109 ~a~~~~~~~~g~t~l~~a~~-~~~~~~~~~Ll~~g~~--~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-----vn~  180 (269)
T 4b93_B          109 GANAGARNADQAVPLHLACQ-QGHFQVVKCLLDSNAK--PNKKDLSGNTPLIYACSGGHHELVALLLQHGAS-----INA  180 (269)
T ss_dssp             TCCTTCCCTTCCCHHHHHHH-HTCHHHHHHHHHTTCC--SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC-----TTC
T ss_pred             CCCcCccCCCCCCccccccc-cChHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-----CCc
Confidence            33333444555667999999 9999999999998655  778899999999999999999999999999998     688


Q ss_pred             CCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCC-HHHHHHHHhcc
Q 043390           85 QNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGK-IEIFNFLAGKN  147 (150)
Q Consensus        85 ~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~-~~~~~~L~~~~  147 (150)
                      ++..|+||||+|+..|+. +++++|++.|++ ++.+|..|+||||+|+++++ .+++++|.+.+
T Consensus       181 ~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~  242 (269)
T 4b93_B          181 SNNKGNTALHEAVIEKHV-FVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSKIMELLQVVPSCV  242 (269)
T ss_dssp             BCTTSCBHHHHHHHTTCH-HHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCHHHHHTTC-----
T ss_pred             cccCCCcHHHHHHHcCCH-HHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhc
Confidence            999999999999999996 999999999965 99999999999999998886 35555554443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.94  E-value=2.2e-26  Score=150.16  Aligned_cols=126  Identities=21%  Similarity=0.169  Sum_probs=109.2

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhh-CCCCcccccccCCCCCChH
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDE-LPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~-~~~~~~~~~~~~~~~g~t~   92 (150)
                      ...+.|+.|+. .|+.+.++.|+..+.+  ++..|..|+||||+|+..|+.+++++|+.. |++     ++.+|..|+||
T Consensus        72 ~g~t~L~~A~~-~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-----~~~~d~~g~tp  143 (222)
T 3ehr_A           72 SIDNPLHEAAK-RGNLSWLRECLDNRVG--VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-----LNQQNKLGDTA  143 (222)
T ss_dssp             EESCHHHHHHH-HTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-----CCCCCTTSCCH
T ss_pred             ccccccccccc-cCcHHHHHHHHhCCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-----ccccCCCCCCH
Confidence            34567999999 9999999999997554  778899999999999999999999999998 887     68899999999


Q ss_pred             HHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           93 LHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        93 l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ||+|+..|+. +++++|++.|+. ++.+|..|.|||++|+..|+.++++.|++.|+.
T Consensus       144 L~~A~~~~~~-~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          144 LHAAAWKGYA-DIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             HHHHHHHTCH-HHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred             HHHHHHcCCH-HHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence            9999999996 999999999965 999999999999999999999999999988763

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.94  E-value=1.3e-25  Score=152.68  Aligned_cols=122  Identities=23%  Similarity=0.218  Sum_probs=111.8

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccc------cccCCCcHHHHHHhh---CChHHHHHHHhhCCCCcccccccCCC
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCV------FTIYDDTVLHVAAYT---KKSDLVMKLLDELPDQSLDKMTRQNK   87 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~------~~~~g~~~L~~a~~~---~~~~~v~~ll~~~~~~~~~~~~~~~~   87 (150)
                      ..|+.|+. .|+.+.++.++..+.+  ++.      .+..|+||||+|+..   ++.+++++|+.+|++     ++.+|.
T Consensus       153 ~~L~~A~~-~g~~~~v~~ll~~g~d--~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-----vn~~d~  224 (301)
T 2b0o_E          153 QRLWTAIC-NRDLLSVLEAFANGQD--FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-----LDAKAA  224 (301)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHTTCC--TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-----TTCCCT
T ss_pred             HHHhhhhh-ccCHHHHHHHHhcCCc--ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-----CCCCCC
Confidence            45999999 9999999999988666  444      588899999999997   889999999999998     688999


Q ss_pred             CCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390           88 AGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        88 ~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      .|+||||+|+..|+. +++++|++.|++ ++.+|..|.|||++|+..|+.+++++|+++|+
T Consensus       225 ~G~TpLh~A~~~g~~-~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga  283 (301)
T 2b0o_E          225 DGNTALHYAALYNQP-DCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQA  283 (301)
T ss_dssp             TCCCHHHHHHHTTCH-HHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCH-HHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence            999999999999996 999999999865 99999999999999999999999999998875

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.94  E-value=4.5e-25  Score=144.38  Aligned_cols=127  Identities=20%  Similarity=0.133  Sum_probs=96.6

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChH
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~   92 (150)
                      ....++|+.|+. .|+.+.++.|++.+.+  ++..|..|+||||+|+..++.+++++|++.|++     ++.++..|.||
T Consensus        38 ~~g~t~L~~A~~-~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~  109 (231)
T 3aji_A           38 QDSRTALHWACS-AGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-----VNAVNQNGCTP  109 (231)
T ss_dssp             TTSCCHHHHHHH-HTCHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCH
T ss_pred             CCCCCHHHHHHH-cCcHHHHHHHHHhCCC--CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCC-----CCCCCCCCCCH
Confidence            344556777777 7888877777776443  566777788888888888888888888887777     56777788888


Q ss_pred             HHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           93 LHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        93 l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ||+|+..|+. +++++|++.+.. ++.++..|.||||+|+..|+.+++++|+++|+.
T Consensus       110 L~~A~~~~~~-~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  164 (231)
T 3aji_A          110 LHYAASKNRH-EIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS  164 (231)
T ss_dssp             HHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCH-HHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence            8888888885 888888887754 777777888888888888888888888877764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=1.3e-25  Score=150.61  Aligned_cols=131  Identities=19%  Similarity=0.151  Sum_probs=96.8

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcc--------------
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSL--------------   79 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~--------------   79 (150)
                      ...++||.|+. .|+.+.++.|+..+.+  ++..+..|+||||+|+..++.+++++|+..++....              
T Consensus        44 ~g~t~L~~A~~-~g~~~~v~~Ll~~ga~--~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  120 (282)
T 1oy3_D           44 LGQTALHLAAI-LGEASTVEKLYAAGAG--VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT  120 (282)
T ss_dssp             TSCCHHHHHHH-HTCHHHHHHHHHTTCC--SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------
T ss_pred             CCCCHHHHHHH-cCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccC
Confidence            34456777777 7777777777766444  556666777777777777777777777776665211              


Q ss_pred             ----------------------------cccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCC-CCCHHHH
Q 043390           80 ----------------------------DKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNN-GGTALLG  130 (150)
Q Consensus        80 ----------------------------~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~-g~tpl~~  130 (150)
                                                  ..++.++..|.||||+|+..|+. +++++|++.|+. ++.++.. |.||||+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~-~~~~~~~~g~tpL~~  198 (282)
T 1oy3_D          121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA-EMVRLLRDAGAD-LNKPEPTCGRTPLHL  198 (282)
T ss_dssp             -----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHHTCC-TTCCCTTTCCCHHHH
T ss_pred             cchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCH-HHHHHHHHcCCC-CCCCCCCCCcCHHHH
Confidence                                        12456777888999999999986 899999998865 7777754 8999999


Q ss_pred             HHHcCCHHHHHHHHhccCC
Q 043390          131 AAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       131 a~~~g~~~~~~~L~~~~~~  149 (150)
                      |++.|+.+++++|+++|+.
T Consensus       199 A~~~~~~~~v~~Ll~~gad  217 (282)
T 1oy3_D          199 AVEAQAASVLELLLKAGAD  217 (282)
T ss_dssp             HHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCHHHHHHHHHcCCC
Confidence            9999999999999998875

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.93  E-value=1.3e-25  Score=155.97  Aligned_cols=131  Identities=18%  Similarity=0.098  Sum_probs=118.2

Q ss_pred             hhcCHHHHHHHHhhc--CHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCC
Q 043390           13 NKINSELYNALMIKQ--DEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGN   90 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~--~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~   90 (150)
                      ....++|+.|+. .|  +.+.++.|+..+.+  ++..|..|+||||+|+..|+.+++++|++.|++.....++.+|..|+
T Consensus       136 ~~g~t~L~~A~~-~g~~~~~~v~~Ll~~ga~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~  212 (364)
T 3ljn_A          136 CKGQTALHWCVG-LGPEYLEMIKILVQLGAS--PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN  212 (364)
T ss_dssp             ESCCCHHHHHHH-SCGGGHHHHHHHHHHTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred             CCCCCHHHHHHH-cCCchHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence            345678999999 99  99999999998655  77889999999999999999999999999998743334688999999


Q ss_pred             hHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390           91 TILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        91 t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      ||||+|+..|+. +++++|++.|++ ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       213 t~L~~A~~~g~~-~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~  268 (364)
T 3ljn_A          213 SHLHWAILINWE-DVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD  268 (364)
T ss_dssp             CTTHHHHTTTCH-HHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSC
T ss_pred             cHHHHHHHcCCH-HHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCC
Confidence            999999999996 999999999965 99999999999999999999999999999875

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=2.1e-25  Score=158.23  Aligned_cols=127  Identities=17%  Similarity=0.119  Sum_probs=103.6

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChH
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~   92 (150)
                      ....++++.|+. .|+.+.++.|+..+.+  .+..+..|+||||+|+..++.+++++|++.|.+     ++.++..|.||
T Consensus       243 ~~g~t~L~~A~~-~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~  314 (437)
T 1n11_A          243 VQGVTPLHLAAQ-EGHAEMVALLLSKQAN--GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-----VDATTRMGYTP  314 (437)
T ss_dssp             TTCCCHHHHHHH-TTCHHHHHHHHTTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-----TTCCCSSCCCH
T ss_pred             CCCCCHHHHHHH-CCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-----CCCCCCCCCCH
Confidence            334556777777 7777777777776444  566777888888888888888888888888877     67788889999


Q ss_pred             HHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           93 LHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        93 l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ||+|+..|+. +++++|++.|+. ++.++..|.||||+|+..|+.+++++|+++|+.
T Consensus       315 L~~A~~~g~~-~~v~~Ll~~gad-~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~  369 (437)
T 1n11_A          315 LHVASHYGNI-KLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS  369 (437)
T ss_dssp             HHHHHHSSCS-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHcCcH-HHHHHHHhcCCC-CCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCC
Confidence            9999999997 899999998865 888899999999999999999999999998875

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=3.6e-25  Score=156.98  Aligned_cols=136  Identities=22%  Similarity=0.193  Sum_probs=101.3

Q ss_pred             cccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccc
Q 043390            4 IGIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMT   83 (150)
Q Consensus         4 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~   83 (150)
                      +|++....+....++|+.|+. .|+.+.++.|++.+.+  ++..+..|.||||+|+..|+.+++++|++.|++     ++
T Consensus         3 ~g~~~~~~~~~g~t~L~~Aa~-~g~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~   74 (437)
T 1n11_A            3 PGISGGGGGESGLTPLHVASF-MGHLPIVKNLLQRGAS--PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-----VN   74 (437)
T ss_dssp             ------------CCHHHHHHH-HTCHHHHHHHHHTTCC--SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-----SS
T ss_pred             CCCCccccCCCCCCHHHHHHH-CCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-----CC
Confidence            344444445556667888888 8888888888887544  567788888888888888888888888888887     57


Q ss_pred             cCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           84 RQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        84 ~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      .++..|.||||+|+..|+. +++++|++.|+. ++..+..|.||||+|+..|+.+++++|+++++.
T Consensus        75 ~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  138 (437)
T 1n11_A           75 AKAKDDQTPLHCAARIGHT-NMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEAS  138 (437)
T ss_dssp             CCCTTSCCHHHHHHHHTCH-HHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHCCCH-HHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Confidence            7888888888888888886 888888888854 777888888888888888888888888877653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.93  E-value=6.2e-25  Score=144.24  Aligned_cols=123  Identities=19%  Similarity=0.159  Sum_probs=59.8

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHH
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHET   96 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a   96 (150)
                      ++|+.|+. .|+.+.++.|++.+.+  ++..+..|+||||+|+..|+.+++++|++.|++     ++.++..|.||||+|
T Consensus        13 t~L~~A~~-~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A   84 (237)
T 3b7b_A           13 SPLHAAAE-AGHVDICHMLVQAGAN--IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-----VDPKDAEGSTCLHLA   84 (237)
T ss_dssp             CHHHHHHH-HTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-----CCCCCTTSCCHHHHH
T ss_pred             CHHHHHHH-cCcHHHHHHHHHcCCC--cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-----CCCCCCCCCcHHHHH
Confidence            34555555 5555555555554332  344455555555555555555555555555544     334444444444444


Q ss_pred             HHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390           97 ASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        97 ~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      +..|+. +++++|++.+..+++..+..|.||||+|+..|+.+++++|+++|+
T Consensus        85 ~~~~~~-~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  135 (237)
T 3b7b_A           85 AKKGHY-EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS  135 (237)
T ss_dssp             HHTTCH-HHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHcCCH-HHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            444443 444444444433344444444444444444444444444444443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=7.4e-26  Score=152.21  Aligned_cols=127  Identities=22%  Similarity=0.215  Sum_probs=101.7

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCC-CC------------------------------------CccccccCCCcHH
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVP-DH------------------------------------SLCVFTIYDDTVL   55 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~-~~------------------------------------~~~~~~~~g~~~L   55 (150)
                      ....++||.|+. .|+.+.++.|++.+. +.                                    ..+..+..|+|||
T Consensus       109 ~~g~T~Lh~A~~-~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpL  187 (276)
T 4hbd_A          109 SNGNTALHYSVS-HANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTAL  187 (276)
T ss_dssp             TTSCCHHHHHHH-TTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHH
T ss_pred             CCCCCHHHHHHH-CCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHH
Confidence            445566888888 888888888887754 21                                    1223355688889


Q ss_pred             HHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHh-hCCcccccccCCCCCHHHHHHHc
Q 043390           56 HVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFR-KAPGLLGMRNNNGGTALLGAAHN  134 (150)
Q Consensus        56 ~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~-~~~~~~~~~~~~g~tpl~~a~~~  134 (150)
                      |+|+..|+.+++++|++.|++     ++.+|..|+||||+|+..|+. +++++|++ .| .+++.+|..|.|||++|+..
T Consensus       188 h~A~~~g~~~~v~~Ll~~gad-----~n~~d~~G~TpLh~A~~~g~~-~iv~~Ll~~~g-ad~~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          188 MLAVSHGRVDVVKALLACEAD-----VNVQDDDGSTALMCACEHGHK-EIAGLLLAVPS-CDISLTDRDGSTALMVALDA  260 (276)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHHTCH-HHHHHHHTSTT-CCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCC-----CCCCCCCCCCHHHHHHHCCCH-HHHHHHHhcCC-CCCcCcCCCCCCHHHHHHHc
Confidence            999999999999999999888     678888999999999999996 89999998 55 44888899999999999999


Q ss_pred             CCHHHHHHHHhcc
Q 043390          135 GKIEIFNFLAGKN  147 (150)
Q Consensus       135 g~~~~~~~L~~~~  147 (150)
                      |+.+++++|+++.
T Consensus       261 g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          261 GQSEIASMLYSRM  273 (276)
T ss_dssp             TCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHhcc
Confidence            9999999988764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=6.1e-26  Score=149.69  Aligned_cols=126  Identities=17%  Similarity=0.164  Sum_probs=88.4

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHH
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTIL   93 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l   93 (150)
                      ...++|+.|+. .++.+.++.++..+.+...   +..|.||||.|+..|+.+++++|+..|++     ++.+|..|.|||
T Consensus         4 ~g~t~L~~a~~-~~~~~~~~~ll~~g~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~d~~g~t~L   74 (239)
T 1ycs_B            4 TGQVSLPPGKR-TNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYEVDD-----PSLPNDEGITAL   74 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-----CCCCCTTSCCHH
T ss_pred             cccccCchhhh-hhhHHHHHHHhccCCCccc---CchhhHHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHH
Confidence            34567999999 9999999999998766433   47789999999999999999999999998     688999999999


Q ss_pred             HHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           94 HETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        94 ~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |+|+..|+. +++++|++.|++ ++.+|..|+||||+|+..|+.+++++|+++|+.+
T Consensus        75 ~~A~~~g~~-~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  129 (239)
T 1ycs_B           75 HNAVCAGHT-EIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV  129 (239)
T ss_dssp             HHHHHHTCH-HHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHcCCH-HHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            999999996 999999999965 9999999999999999999999999999999864

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.93  E-value=3.9e-25  Score=149.30  Aligned_cols=57  Identities=18%  Similarity=0.091  Sum_probs=28.0

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCC
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPD   76 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~   76 (150)
                      ++|+.|+. .|+.+.++.|+..+.+  ++.+|..|+||||+|+..|+.+++++|++.|++
T Consensus        61 t~L~~Aa~-~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  117 (285)
T 3d9h_A           61 SPMHEAAI-HGHQLSLRNLISQGWA--VNIITADHVSPLHEACLGGHLSCVKILLKHGAQ  117 (285)
T ss_dssp             CHHHHHHH-TTCHHHHHHHHHTTCC--SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHH-cCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC
Confidence            33555555 5555555555544322  344445555555555555555555555555444

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=1.8e-25  Score=147.95  Aligned_cols=124  Identities=23%  Similarity=0.238  Sum_probs=110.9

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCC-CCCCh
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQN-KAGNT   91 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~-~~g~t   91 (150)
                      ....++||.|+. .|+.+.++.|+. +.  +++.+|..|+||||+|+..|+.+++++|+.+|++     ++.++ ..|+|
T Consensus        43 ~~g~t~L~~A~~-~g~~~~v~~Ll~-~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~~~g~t  113 (244)
T 3ui2_A           43 SEYETPWWTAAR-KADEQALSQLLE-DR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD-----LDHRDMRGGLT  113 (244)
T ss_dssp             HHHHHHHHHHHT-TTCHHHHHHTTT-TC--CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCSSSCCC
T ss_pred             cCCCCHHHHHHH-cCCHHHHHHHHc-CC--CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-----CCcCCCCCCCC
Confidence            445678999999 999999999988 43  4788999999999999999999999999999998     57777 78999


Q ss_pred             HHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHH----------------HcCCHHHHHHHHhcc
Q 043390           92 ILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAA----------------HNGKIEIFNFLAGKN  147 (150)
Q Consensus        92 ~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~----------------~~g~~~~~~~L~~~~  147 (150)
                      |||+|+..|+. +++++|++.|+. ++.+|..|.||||+|+                ..|+.+++++|++++
T Consensus       114 ~L~~A~~~g~~-~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          114 ALHMAAGYVRP-EVVEALVELGAD-IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCH-HHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            99999999996 999999999865 9999999999999888                668899999998754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.93  E-value=6.5e-26  Score=150.66  Aligned_cols=131  Identities=17%  Similarity=0.151  Sum_probs=111.4

Q ss_pred             hhhhcCHHHHHHHHhh---cCHHHHHHHHHhCCCCC---------ccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCc
Q 043390           11 AKNKINSELYNALMIK---QDEQKVIELCRKVPDHS---------LCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQS   78 (150)
Q Consensus        11 ~~~~~~~~l~~a~~~~---~~~~~~~~ll~~~~~~~---------~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~   78 (150)
                      .+....++||.|+. .   |+.+.++.|++.+.+..         ....|..|+||||+|+..|+.+++++|++.|++  
T Consensus        39 ~d~~g~t~L~~A~~-~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--  115 (256)
T 2etb_A           39 EGSTGKTCLMKAVL-NLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD--  115 (256)
T ss_dssp             BTTTTBCHHHHHHH-TCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC--
T ss_pred             CCCCCCCHHHHHHH-ccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC--
Confidence            34556678999999 9   99999999998754422         112346799999999999999999999999998  


Q ss_pred             ccccccCCCC-------------CChHHHHHHHcCCcHHHHHHHHh---hCCcccccccCCCCCHHHHHHH--cCCHH--
Q 043390           79 LDKMTRQNKA-------------GNTILHETASSSHALPVADKLFR---KAPGLLGMRNNNGGTALLGAAH--NGKIE--  138 (150)
Q Consensus        79 ~~~~~~~~~~-------------g~t~l~~a~~~g~~~~~~~~Ll~---~~~~~~~~~~~~g~tpl~~a~~--~g~~~--  138 (150)
                         ++.++..             |.||||+|+..|+. +++++|++   .|++ ++.+|..|+||||+|+.  .++.+  
T Consensus       116 ---~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~-~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~  190 (256)
T 2etb_A          116 ---VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW-DVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENS  190 (256)
T ss_dssp             ---TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCH-HHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHH
T ss_pred             ---CCcccccccccccccccccCCCCHHHHHHHcCCH-HHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhh
Confidence               4666665             99999999999996 99999999   7754 99999999999999999  88888  


Q ss_pred             -----HHHHHHhccCC
Q 043390          139 -----IFNFLAGKNFR  149 (150)
Q Consensus       139 -----~~~~L~~~~~~  149 (150)
                           ++++|+++|++
T Consensus       191 ~~~~~iv~~Ll~~ga~  206 (256)
T 2etb_A          191 ALVIHMYDGLLQMGAR  206 (256)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCC
Confidence                 99999998763

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.93  E-value=4.2e-25  Score=149.14  Aligned_cols=125  Identities=19%  Similarity=0.151  Sum_probs=109.3

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChH
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~   92 (150)
                      ....++||.|+. .|+.+.++.|+..+.+  ++..  +|+||||+|+..|+.+++++|++.|++     ++.+|..|.||
T Consensus        29 ~~g~t~L~~A~~-~g~~~~v~~Ll~~g~~--~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~d~~g~t~   98 (285)
T 3kea_A           29 VHGHSASYYAIA-DNNVRLVCTLLNAGAL--KNLL--ENEFPLHQAATLEDTKIVKILLFSGLD-----DSQFDDKGNTA   98 (285)
T ss_dssp             TTSCCHHHHHHH-TTCHHHHHHHHHTTGG--GSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCC-----TTCCCTTSCCH
T ss_pred             CCCCCHHHHHHH-cCCHHHHHHHHhCCCC--CCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCcCCCCCcH
Confidence            345567999999 9999999999998544  3333  589999999999999999999999988     67889999999


Q ss_pred             HHHHHHcCCcHHHHHHHHhhCCcccccccCCC-CCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           93 LHETASSSHALPVADKLFRKAPGLLGMRNNNG-GTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        93 l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g-~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ||+|+..|+. +++++|++.|+. ++.++..| .||||+|+..|+.+++++|+++|+.
T Consensus        99 L~~A~~~g~~-~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~  154 (285)
T 3kea_A           99 LYYAVDSGNM-QTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS  154 (285)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT
T ss_pred             HHHHHHcCCH-HHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Confidence            9999999996 999999999865 89999988 7999999999999999999998864

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=2.1e-24  Score=144.73  Aligned_cols=124  Identities=23%  Similarity=0.202  Sum_probs=113.8

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCcccc-ccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVF-TIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~-~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      .+.|+.|+. .|+.+.++.+++.+++  ++.. +..|+||||+|+..|+.+++++|++.|++     ++.++..|.||||
T Consensus         6 ~~~L~~A~~-~g~~~~v~~Ll~~g~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~   77 (285)
T 1wdy_A            6 NHLLIKAVQ-NEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-----PVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHH
T ss_pred             chHHHHHHH-cCCHHHHHHHHHcCCC--cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CcccCCCCCCHHH
Confidence            456999999 9999999999998765  4555 78899999999999999999999999998     5788999999999


Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      +|+..|+. +++++|++.++. ++.++..|.||||+|+..|+.+++++|+++|++
T Consensus        78 ~A~~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  130 (285)
T 1wdy_A           78 LAAIAGSV-KLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN  130 (285)
T ss_dssp             HHHHHTCH-HHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHcCCH-HHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence            99999996 999999999965 999999999999999999999999999999875

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.93  E-value=2.2e-24  Score=141.76  Aligned_cols=129  Identities=17%  Similarity=0.213  Sum_probs=79.5

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      ..++|+.|+. .|+.+.++.|++.+.+  ++..+..|+||||+|+..++.+++++|+..+..... .++..+..|.||||
T Consensus        46 g~t~L~~A~~-~~~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~~g~t~L~  121 (241)
T 1k1a_A           46 RQTPLHLAVI-TTLPSVVRLLVTAGAS--PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL-DLEARNYDGLTALH  121 (241)
T ss_dssp             SCCHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSC-CTTCCCTTSCCHHH
T ss_pred             CCCHHHHHHH-cCCHHHHHHHHHcCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cccccCcCCCcHHH
Confidence            3445666666 6666666666655333  445556666666666666666666666666541100 14556666777777


Q ss_pred             HHHHcCCcHHHHHHHHhhCCccccccc-CCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRN-NNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~-~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      +|+..|+. +++++|++.+.. ++..+ ..|.||||+|+..|+.+++++|+++|+.
T Consensus       122 ~A~~~~~~-~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  175 (241)
T 1k1a_A          122 VAVNTECQ-ETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN  175 (241)
T ss_dssp             HHHHHTCH-HHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHcCCH-HHHHHHHHcCCC-cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            77777774 777777777644 55555 5677777777777777777777776654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.93  E-value=2.3e-24  Score=148.37  Aligned_cols=65  Identities=26%  Similarity=0.284  Sum_probs=45.5

Q ss_pred             ccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           83 TRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        83 ~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      +.++..|.||||+|+..|+. +++++|++.|+. ++.+|..|+||||+|+..|+.+++++|+++|+.
T Consensus       241 ~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad  305 (351)
T 3utm_A          241 NEKNKDFMTPLHVAAERAHN-DVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSD  305 (351)
T ss_dssp             TCCCTTCCCHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CCcCCCCCCHHHHHHHcCCH-HHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            44566677777777777775 777777777644 777777777777777777777777777777664

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=2.1e-25  Score=153.27  Aligned_cols=139  Identities=20%  Similarity=0.134  Sum_probs=116.7

Q ss_pred             cccccch-hhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCC---hHHHHHHHhhCCCCcc
Q 043390            4 IGIEETD-AKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKK---SDLVMKLLDELPDQSL   79 (150)
Q Consensus         4 ~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~---~~~v~~ll~~~~~~~~   79 (150)
                      .|++... .+....++||.|+. .|+.+.++.|++.+.+  ++.+|..|+||||+|+..|+   .++++.|+..+..   
T Consensus       119 ~g~dvn~~~d~~g~TpLh~Aa~-~g~~~~v~~Ll~~Gad--~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~---  192 (327)
T 1sw6_A          119 TQLNLNIPVDEHGNTPLHWLTS-IANLELVKHLVKHGSN--RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---  192 (327)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHH-TTCHHHHHHHHHTTCC--TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---
T ss_pred             cCCCcccccCCCCCcHHHHHHH-cCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc---
Confidence            3444444 45666778999999 9999999999998655  77899999999999999998   6777888877632   


Q ss_pred             cccccCCCCCChHHHHHHH----cCCcHHHHHHHHhhCCc----------------------------------------
Q 043390           80 DKMTRQNKAGNTILHETAS----SSHALPVADKLFRKAPG----------------------------------------  115 (150)
Q Consensus        80 ~~~~~~~~~g~t~l~~a~~----~g~~~~~~~~Ll~~~~~----------------------------------------  115 (150)
                       +++.+|..|+||||+|+.    .|+. +++++|++.+..                                        
T Consensus       193 -~~~~~d~~g~tpLh~A~~~~~~~g~~-~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~  270 (327)
T 1sw6_A          193 -CLILEDSMNRTILHHIIITSGMTGCS-AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKW  270 (327)
T ss_dssp             -GGGEECTTCCCHHHHHHHHHTSTTCH-HHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHH
T ss_pred             -cccCCCCCCCCHHHHHHHHccccccH-HHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHH
Confidence             278899999999999999    8886 999999877420                                        


Q ss_pred             ----ccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390          116 ----LLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       116 ----~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                          +++.+|..|+||||+|++.|+.+++++|+++|+.+
T Consensus       271 Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~  309 (327)
T 1sw6_A          271 IIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP  309 (327)
T ss_dssp             HHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred             HHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                37888999999999999999999999999999863

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.93  E-value=7.8e-25  Score=152.30  Aligned_cols=122  Identities=18%  Similarity=0.189  Sum_probs=112.1

Q ss_pred             HHHHHHHHhh-cCHHHHHHHHHhCCCCCccccc--cCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHH
Q 043390           17 SELYNALMIK-QDEQKVIELCRKVPDHSLCVFT--IYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTIL   93 (150)
Q Consensus        17 ~~l~~a~~~~-~~~~~~~~ll~~~~~~~~~~~~--~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l   93 (150)
                      +.||.|+. . ++.+.++.|+..+.+  ++..+  ..|+||||+|+..++.+++++|+.+|++     ++.+|..|+|||
T Consensus       201 t~L~~Aa~-~~g~~~~v~~LL~~Gad--vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-----vn~~d~~G~TpL  272 (368)
T 3jue_A          201 ALLFRASG-HPPSLPTMADALAHGAD--VNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-----VNQADSAGRGPL  272 (368)
T ss_dssp             HHHHHHTS-SSCCHHHHHHHHHTTCC--TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHH
T ss_pred             cHHHHHHH-ccCCHHHHHHHHHcCCC--CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-----CCCCCCCCCCHH
Confidence            36889998 8 999999999998766  55555  8899999999999999999999999998     688999999999


Q ss_pred             HHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390           94 HETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        94 ~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      |+|+..|+. +++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.+.
T Consensus       273 h~A~~~g~~-~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          273 HHATILGHT-GLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             HHHHHHTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHHHHcCcH-HHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            999999996 999999999965 99999999999999999999999999998764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=1e-24  Score=146.20  Aligned_cols=129  Identities=18%  Similarity=0.149  Sum_probs=115.4

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCC----hHHHHHHHhhCCCCcccccccCCCCC
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKK----SDLVMKLLDELPDQSLDKMTRQNKAG   89 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~----~~~v~~ll~~~~~~~~~~~~~~~~~g   89 (150)
                      ...++++.|+. .|+.+.++.|+... +.+++..+..|+||||+|+..++    .+++++|+..|++     ++.++..|
T Consensus       147 ~g~t~L~~A~~-~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-----~~~~~~~g  219 (285)
T 1wdy_A          147 GGATALMDAAE-KGHVEVLKILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-----VNVRGERG  219 (285)
T ss_dssp             CCCCHHHHHHH-HTCHHHHHHHHHTS-CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-----SSCCCTTS
T ss_pred             CCCcHHHHHHH-cCCHHHHHHHHHhc-CCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-----CCCcCCCC
Confidence            34567999999 99999999999862 23377889999999999999999    8999999999998     68899999


Q ss_pred             ChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           90 NTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        90 ~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      .||||+|+..|+. +++++|++..+.+++.+|..|.||||+|++.|+.+++++|+++|+.+
T Consensus       220 ~t~L~~A~~~~~~-~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~  279 (285)
T 1wdy_A          220 KTPLILAVEKKHL-GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             CCHHHHHHHTTCH-HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             CcHHHHHHHcCCH-HHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Confidence            9999999999996 99999999444559999999999999999999999999999999863

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.93  E-value=2.7e-24  Score=145.58  Aligned_cols=124  Identities=25%  Similarity=0.348  Sum_probs=109.6

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHE   95 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~   95 (150)
                      .+.|+.|+. .|+.+.++.|+..+.+  ++..|..|+||||+|+..|+.+++++|++.|++     ++.+|..|.||||+
T Consensus        41 ~t~l~~A~~-~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~~g~tpL~~  112 (299)
T 1s70_B           41 GAVFLAACS-SGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGAN-----INQPDNEGWIPLHA  112 (299)
T ss_dssp             HHHHHHHHH-HTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHH
T ss_pred             ccHHHHHHH-cCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCcHHHH
Confidence            456999999 9999999999998655  778899999999999999999999999999998     68899999999999


Q ss_pred             HHHcCCcHHHHHHHHhhCCccccccc------------------------------------------------------
Q 043390           96 TASSSHALPVADKLFRKAPGLLGMRN------------------------------------------------------  121 (150)
Q Consensus        96 a~~~g~~~~~~~~Ll~~~~~~~~~~~------------------------------------------------------  121 (150)
                      |+..|+. +++++|++.|+. ++..+                                                      
T Consensus       113 A~~~g~~-~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (299)
T 1s70_B          113 AASCGYL-DIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (299)
T ss_dssp             HHHHTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHcCCH-HHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence            9999996 999999999854 55444                                                      


Q ss_pred             ------CCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390          122 ------NNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       122 ------~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                            ..|.||||+|+..|+.+++++|+++|+.
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d  224 (299)
T 1s70_B          191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD  224 (299)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             chhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC
Confidence                  3577888889999999999999988875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.93  E-value=1.7e-24  Score=146.10  Aligned_cols=135  Identities=19%  Similarity=0.070  Sum_probs=117.9

Q ss_pred             ccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCccccccc
Q 043390            5 GIEETDAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTR   84 (150)
Q Consensus         5 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~   84 (150)
                      |.+....+....++|+.|+. .|+.+.++.|+..+.+  ++..|..|+||||+|+..++.+++++|++.|+++     +.
T Consensus        82 g~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~ga~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-----~~  153 (285)
T 3d9h_A           82 GWAVNIITADHVSPLHEACL-GGHLSCVKILLKHGAQ--VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-----QP  153 (285)
T ss_dssp             TCCSCEECTTCCCHHHHHHH-TTCHHHHHHHHHTTCC--SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-----SC
T ss_pred             CCCCCCcCCCCCCHHHHHHH-CCcHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-----CC
Confidence            33333444556778999999 9999999999998544  7788999999999999999999999999999883     33


Q ss_pred             CCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           85 QNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        85 ~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                       +..|.||||+|+..|+. +++++|++.++. ++.+|..|.||||+|+..|+.+++++|+++|+.+
T Consensus       154 -~~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  216 (285)
T 3d9h_A          154 -ESDLASPIHEAARRGHV-ECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGADV  216 (285)
T ss_dssp             -SCTTSCHHHHHHHHTCH-HHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             -CCCCCCHHHHHHHcCCH-HHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC
Confidence             44599999999999996 999999999965 9999999999999999999999999999999763

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.93  E-value=9.5e-25  Score=151.64  Aligned_cols=135  Identities=16%  Similarity=0.077  Sum_probs=95.3

Q ss_pred             hhhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcc----------
Q 043390           10 DAKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSL----------   79 (150)
Q Consensus        10 ~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~----------   79 (150)
                      ..+....++||.|+. .|+.+.++.|++.+.+  ++..|..|+||||+|+..|+.+++++|++.|++.+.          
T Consensus        15 ~~d~~g~t~L~~Aa~-~g~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A   91 (364)
T 3ljn_A           15 KSDDENMEKIHVAAR-KGQTDEVRRLIETGVS--PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLA   91 (364)
T ss_dssp             -CCHHHHHHHHHHHH-HTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHH
T ss_pred             ccCCCCCCHHHHHHH-cCCHHHHHHHHHcCCC--ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHH
Confidence            334455566888888 8888888888877544  667777888888888888888888888887765311          


Q ss_pred             --------------------cccc-----------------cCCCCCChHHHHHHHcC--CcHHHHHHHHhhCCcccccc
Q 043390           80 --------------------DKMT-----------------RQNKAGNTILHETASSS--HALPVADKLFRKAPGLLGMR  120 (150)
Q Consensus        80 --------------------~~~~-----------------~~~~~g~t~l~~a~~~g--~~~~~~~~Ll~~~~~~~~~~  120 (150)
                                          ...+                 .++..|.||||+|+..|  +. +++++|++.|+. ++.+
T Consensus        92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~-~~v~~Ll~~ga~-~~~~  169 (364)
T 3ljn_A           92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYL-EMIKILVQLGAS-PTAK  169 (364)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGH-HHHHHHHHHTCC-TTCC
T ss_pred             HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchH-HHHHHHHHcCCC-Cccc
Confidence                                0001                 15666777777777777  65 777777777754 7777


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390          121 NNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       121 ~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      |..|.||||+|+..|+.+++++|+++|+.
T Consensus       170 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  198 (364)
T 3ljn_A          170 DKADETPLMRAMEFRNREALDLMMDTVPS  198 (364)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHCSC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence            77777777777777777777777776654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=8e-25  Score=147.18  Aligned_cols=129  Identities=19%  Similarity=0.255  Sum_probs=110.1

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCC-CCcc-----------------
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELP-DQSL-----------------   79 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~-~~~~-----------------   79 (150)
                      .++.++. .++.+.++.++....+..++..|..|+||||+|+..|+.+++++|++.|+ +.+.                 
T Consensus        79 ~l~~a~~-~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           79 DAHPELV-RRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TCCHHHH-HHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             CCCHHHH-HHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            4678888 99999999998876555577889999999999999999999999999997 4211                 


Q ss_pred             ----------------cccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHH
Q 043390           80 ----------------DKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL  143 (150)
Q Consensus        80 ----------------~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L  143 (150)
                                      ...+..+..|.||||+|+..|+. +++++|++.|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~-~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~L  235 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRV-DVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLL  235 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH-HHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence                            02234566799999999999996 999999999865 999999999999999999999999999


Q ss_pred             Hh-ccCC
Q 043390          144 AG-KNFR  149 (150)
Q Consensus       144 ~~-~~~~  149 (150)
                      ++ .|+.
T Consensus       236 l~~~gad  242 (276)
T 4hbd_A          236 LAVPSCD  242 (276)
T ss_dssp             HTSTTCC
T ss_pred             HhcCCCC
Confidence            98 7765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.92  E-value=1.1e-25  Score=149.77  Aligned_cols=129  Identities=18%  Similarity=0.163  Sum_probs=110.8

Q ss_pred             hhcCHHHHHHH---HhhcCHHHHHHHHHhCCC---------CCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCccc
Q 043390           13 NKINSELYNAL---MIKQDEQKVIELCRKVPD---------HSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLD   80 (150)
Q Consensus        13 ~~~~~~l~~a~---~~~~~~~~~~~ll~~~~~---------~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~   80 (150)
                      ....++||.|+   . .|+.+.++.|+..+.+         ...+..|..|+||||+|+..|+.+++++|++.|++    
T Consensus        44 ~~g~t~L~~A~~~~~-~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----  118 (260)
T 3jxi_A           44 STGKTCLPKALLNLS-AGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD----  118 (260)
T ss_dssp             TTCCCHHHHHHTSCB-TTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC----
T ss_pred             CCCCcHHHHHHHHhh-cCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC----
Confidence            44667899999   6 6999999999987432         22444566899999999999999999999999998    


Q ss_pred             ccccCC--------------CCCChHHHHHHHcCCcHHHHHHHHh---hCCcccccccCCCCCHHHHHHHcCC-------
Q 043390           81 KMTRQN--------------KAGNTILHETASSSHALPVADKLFR---KAPGLLGMRNNNGGTALLGAAHNGK-------  136 (150)
Q Consensus        81 ~~~~~~--------------~~g~t~l~~a~~~g~~~~~~~~Ll~---~~~~~~~~~~~~g~tpl~~a~~~g~-------  136 (150)
                       ++.++              ..|.||||+|+..|+. +++++|++   .|+. ++.+|..|+||||+|+..++       
T Consensus       119 -~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~  195 (260)
T 3jxi_A          119 -VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP-HIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTK  195 (260)
T ss_dssp             -TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCH-HHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHH
T ss_pred             -cCccccccccCcccccccccCCCCHHHHHHHcCCH-HHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHH
Confidence             56666              6899999999999996 99999999   7754 99999999999999998887       


Q ss_pred             --HHHHHHHHhccCC
Q 043390          137 --IEIFNFLAGKNFR  149 (150)
Q Consensus       137 --~~~~~~L~~~~~~  149 (150)
                        .+++++|+++|++
T Consensus       196 ~~~~~v~~Ll~~ga~  210 (260)
T 3jxi_A          196 FVTKMYDLLLIKCAK  210 (260)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcc
Confidence              7999999998763

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.92  E-value=2e-24  Score=150.74  Aligned_cols=130  Identities=17%  Similarity=0.098  Sum_probs=105.1

Q ss_pred             hhhcCHHHHHHHHhhc---CHHHHHHHHHhCCCCCc------cccccCCCcHHHHHHhhCChHHHHHHHhhC-CCCcccc
Q 043390           12 KNKINSELYNALMIKQ---DEQKVIELCRKVPDHSL------CVFTIYDDTVLHVAAYTKKSDLVMKLLDEL-PDQSLDK   81 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~~---~~~~~~~ll~~~~~~~~------~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~-~~~~~~~   81 (150)
                      +....++|+.|+. .+   +.+.++.|+..+.+.+.      +..|..|+||||+|+..|+.+++++|+..+ .+     
T Consensus       232 d~~g~t~L~~A~~-~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----  305 (373)
T 2fo1_E          232 DRNGMTALMIVAH-NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-----  305 (373)
T ss_dssp             CTTSCCHHHHHHH-SCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-----
T ss_pred             CCCCCCHHHHHHH-hCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC-----
Confidence            3445566888888 76   67788888887655332      125668899999999999999999999876 55     


Q ss_pred             cccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           82 MTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        82 ~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ++.+|..|.||||+|+..|+. +++++|++.|+. ++.+|..|.|||++|+..|+.+++++|++++++
T Consensus       306 ~n~~d~~g~TpL~~A~~~g~~-~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          306 KDKQDEDGKTPIMLAAQEGRI-EVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCH-HHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             ccCcCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC-ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            688899999999999999996 999999999865 888999999999999999999999999988875

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.92  E-value=3.5e-25  Score=149.55  Aligned_cols=124  Identities=20%  Similarity=0.143  Sum_probs=77.4

Q ss_pred             hcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCC-CcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCC-CCCh
Q 043390           14 KINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYD-DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNK-AGNT   91 (150)
Q Consensus        14 ~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g-~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~-~g~t   91 (150)
                      ...++|+.|+. .|+.+.++.|+..+.+  ++..+..| .||||+|+..|+.+++++|+..|++.       .+. .|.|
T Consensus        94 ~g~t~L~~A~~-~g~~~~v~~Ll~~ga~--~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~g~t  163 (285)
T 3kea_A           94 KGNTALYYAVD-SGNMQTVKLFVKKNWR--LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-------FDLAILLS  163 (285)
T ss_dssp             TSCCHHHHHHH-TTCHHHHHHHHHHCGG--GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT-------CCCSTHHH
T ss_pred             CCCcHHHHHHH-cCCHHHHHHHHhcCCC--CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc-------ccccCCcc
Confidence            33445555555 5555555555555322  44555555 45566665555555555555555441       222 6667


Q ss_pred             HHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCH-HHHHHHcCCHHHHHHHHhccCC
Q 043390           92 ILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTA-LLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        92 ~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tp-l~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      |||+|+..|+. +++++|++.|+. ++.++..|+|| ||+|+..|+.+++++|+++|+.
T Consensus       164 ~L~~A~~~g~~-~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad  220 (285)
T 3kea_A          164 CIHITIKNGHV-DMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN  220 (285)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC
T ss_pred             HHHHHHHcChH-HHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Confidence            77777777775 777777777643 77777777776 7777777777777777777765

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.92  E-value=1.3e-24  Score=145.62  Aligned_cols=130  Identities=16%  Similarity=0.191  Sum_probs=111.0

Q ss_pred             hhhcCHHHHHHHHhh---cCHHHHHHHHHhCCC---------CCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcc
Q 043390           12 KNKINSELYNALMIK---QDEQKVIELCRKVPD---------HSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSL   79 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~---~~~~~~~~ll~~~~~---------~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~   79 (150)
                      +....++|+.|+. .   |+.+.++.|+..+.+         ......|..|+||||+|+..|+.+++++|++.|++   
T Consensus        51 ~~~g~tpL~~A~~-~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~---  126 (273)
T 2pnn_A           51 PETGKTCLLKAML-NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD---  126 (273)
T ss_dssp             TTTCCCHHHHHHH-SCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC---
T ss_pred             CcCCCCHHHHHHH-HHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC---
Confidence            3456678999998 7   999999999987532         11223567899999999999999999999999998   


Q ss_pred             cccccCCC--------------CCChHHHHHHHcCCcHHHHHHHHh---hCCcccccccCCCCCHHHHHHHcCC------
Q 043390           80 DKMTRQNK--------------AGNTILHETASSSHALPVADKLFR---KAPGLLGMRNNNGGTALLGAAHNGK------  136 (150)
Q Consensus        80 ~~~~~~~~--------------~g~t~l~~a~~~g~~~~~~~~Ll~---~~~~~~~~~~~~g~tpl~~a~~~g~------  136 (150)
                        ++.++.              .|.||||+|+..|+. +++++|++   .|+. ++.+|..|+||||+|+..|+      
T Consensus       127 --~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~  202 (273)
T 2pnn_A          127 --VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL-AIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNT  202 (273)
T ss_dssp             --TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH-HHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHH
T ss_pred             --cCccccccccccccccccccCCCCHHHHHHHcCCH-HHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHH
Confidence              466665              799999999999996 99999999   7754 99999999999999999998      


Q ss_pred             ---HHHHHHHHhccCC
Q 043390          137 ---IEIFNFLAGKNFR  149 (150)
Q Consensus       137 ---~~~~~~L~~~~~~  149 (150)
                         .+++++|+++|+.
T Consensus       203 ~~~~~~v~~Ll~~ga~  218 (273)
T 2pnn_A          203 KFVTSMYNEILILGAK  218 (273)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhh
Confidence               7999999998763

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=2.7e-24  Score=130.46  Aligned_cols=98  Identities=24%  Similarity=0.297  Sum_probs=92.1

Q ss_pred             ccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCC
Q 043390           46 VFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGG  125 (150)
Q Consensus        46 ~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~  125 (150)
                      .+|..|+||||+|+..|+.+++++|++.|++     ++.+|..|.||||+|+..|+. +++++|++.++. ++.+|..|.
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~g~~-~~~~~~~g~   77 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-----PNVKDHAGWTPLHEACNHGHL-KVVELLLQHKAL-VNTTGYQND   77 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----SCCCCTTSCCHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCGGGC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCcCCCCCCCHHHHHHHcCCH-HHHHHHHHcCCc-ccCcCCCCC
Confidence            5789999999999999999999999999988     688999999999999999996 999999999865 999999999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhccCCC
Q 043390          126 TALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       126 tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      ||||+|+..|+.+++++|+++|+.+
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~ga~~  102 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYGASR  102 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999998763

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=5.3e-25  Score=140.23  Aligned_cols=126  Identities=17%  Similarity=0.120  Sum_probs=104.2

Q ss_pred             hhcCHHHHHHHHhhcCHH----HHHHHHHhCCCCCccccccCCCcHHHHHHhhCC------hHHHHHHHhhCCCCccccc
Q 043390           13 NKINSELYNALMIKQDEQ----KVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKK------SDLVMKLLDELPDQSLDKM   82 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~----~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~------~~~v~~ll~~~~~~~~~~~   82 (150)
                      ....++||.|+. .|+.+    .++.|+..+.+  ++.+|..|+||||+|+..++      .+++++|+..|++     +
T Consensus        36 ~~g~T~Lh~A~~-~~~~~~~~~iv~~Ll~~Gad--vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-----i  107 (186)
T 3t8k_A           36 VLKSNILYDVLR-NNNDEARYKISMFLINKGAD--IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-----I  107 (186)
T ss_dssp             HHTTTHHHHHTT-CSCHHHHHHHHHHHHHTTCC--SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-----S
T ss_pred             cCCCCHHHHHHH-cCCcchHHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC-----C
Confidence            345667999998 88754    67778887555  77889999999999999887      4789999999998     6


Q ss_pred             ccCCCCCC-hHHHHHHHcCCc----HHHHHHHHh-hCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 043390           83 TRQNKAGN-TILHETASSSHA----LPVADKLFR-KAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKN  147 (150)
Q Consensus        83 ~~~~~~g~-t~l~~a~~~g~~----~~~~~~Ll~-~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~  147 (150)
                      +.+|..|. ||||+|+..+..    .+++++|++ .|++ ++.+|..|.||||+|++.|+.+++++|.++.
T Consensus       108 n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          108 TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            88999999 999999985432    258899999 7754 9999999999999999999999999988653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.92  E-value=8.7e-25  Score=152.55  Aligned_cols=104  Identities=20%  Similarity=0.260  Sum_probs=76.5

Q ss_pred             cccccCCCcHHHHHHhhC---ChHHHHHHHhhCCCCccc---ccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccc
Q 043390           45 CVFTIYDDTVLHVAAYTK---KSDLVMKLLDELPDQSLD---KMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLG  118 (150)
Q Consensus        45 ~~~~~~g~~~L~~a~~~~---~~~~v~~ll~~~~~~~~~---~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~  118 (150)
                      +..|..|+||||+|+..+   +.+++++|++.|++++..   ..+..|..|.||||+|+..|+. +++++|++.++.+++
T Consensus       229 ~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~n  307 (373)
T 2fo1_E          229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM-PIVKYLVGEKGSNKD  307 (373)
T ss_dssp             SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCH-HHHHHHHHHSCCCTT
T ss_pred             hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCH-HHHHHHHHhcCCCcc
Confidence            334555555555555554   455556666665553110   0123567899999999999996 999999988756699


Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390          119 MRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       119 ~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      .+|..|.||||+|+..|+.+++++|+++|+.
T Consensus       308 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  338 (373)
T 2fo1_E          308 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS  338 (373)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.92  E-value=7.7e-25  Score=129.16  Aligned_cols=97  Identities=32%  Similarity=0.360  Sum_probs=89.7

Q ss_pred             ccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCC
Q 043390           46 VFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGG  125 (150)
Q Consensus        46 ~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~  125 (150)
                      .+|..|+||||+|+..++.+++++|+..|++     ++.+|..|.||||+|+..|+. +++++|++.++. ++.+|..|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~d~~g~t~L~~A~~~~~~-~~~~~Ll~~g~~-~~~~d~~g~   76 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-----VNARSKDGNTPLHLAAKNGHA-EIVKLLLAKGAD-VNARSKDGN   76 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-----SSCCCSSSCCTTHHHHTTTCH-HHHHHHTTTTCC-TTCCCTTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCcH-HHHHHHHHcCCC-CcccCCCCC
Confidence            5688999999999999999999999999988     688899999999999999996 999999999865 899999999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhccCC
Q 043390          126 TALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       126 tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      |||++|+..|+.+++++|+++|++
T Consensus        77 tpl~~A~~~~~~~~~~~Ll~~ga~  100 (115)
T 2l6b_A           77 TPEHLAKKNGHHEIVKLLDAKGAD  100 (115)
T ss_dssp             CTTHHHHTTTCHHHHHHHHTTSSS
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999999986

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.91  E-value=1.3e-23  Score=137.73  Aligned_cols=123  Identities=20%  Similarity=0.156  Sum_probs=105.5

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETA   97 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~   97 (150)
                      .|+.|+. .|+.+.++.+++.+.+  ++..+..|.||||+|+..|+.+++++|++.+.+.    ....+..|.||||+|+
T Consensus        12 ~l~~A~~-~g~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~----~~~~~~~~~t~L~~A~   84 (240)
T 3eu9_A           12 DIVKATQ-YGIYERCRELVEAGYD--VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV----DQLGGDLNSTPLHWAT   84 (240)
T ss_dssp             CHHHHHH-TTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----TCCBTTTTBCHHHHHH
T ss_pred             HHHHHHH-cCChHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc----hhhcCCcCCChhHHHH
Confidence            4889999 9999999999987544  6778888999999999999999999999998873    2344556899999999


Q ss_pred             HcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           98 SSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        98 ~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ..|+. +++++|++.++. ++.++..|.||||+|+..|+.+++++|+++|+.
T Consensus        85 ~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~  134 (240)
T 3eu9_A           85 RQGHL-SMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD  134 (240)
T ss_dssp             HHTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HcCCH-HHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC
Confidence            99996 999999998865 888889999999999999999999999988865

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=2.1e-24  Score=130.90  Aligned_cols=101  Identities=20%  Similarity=0.175  Sum_probs=93.8

Q ss_pred             CCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCccccccc
Q 043390           42 HSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRN  121 (150)
Q Consensus        42 ~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~  121 (150)
                      .+++..+..|.||||+|+..++.+++++|++.|++     ++.++..|.||||+|+. |+. +++++|++.++. ++.++
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~-~~~-~~v~~Ll~~g~~-~~~~~   74 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-----PNALNRFGRRPIQVMMM-GSA-QVAELLLLHGAE-PNCAD   74 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCTTTTTSTT-SCH-HHHHHHHHHTCC-SSCCB
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-----cCCcCCCCCCHHHHHHc-CCH-HHHHHHHHCCCC-CCCcC
Confidence            34678899999999999999999999999999988     68899999999999999 996 999999999965 99999


Q ss_pred             CC-CCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390          122 NN-GGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       122 ~~-g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      .. |.||||+|+..|+.+++++|+++|+.+
T Consensus        75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  104 (136)
T 1d9s_A           75 PATLTRPVHDAAREGFLDTLVVLHRAGARL  104 (136)
T ss_dssp             TTTTBCHHHHHHHHTCHHHHHHHHHTCCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99 999999999999999999999998763

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.91  E-value=1.9e-23  Score=143.78  Aligned_cols=127  Identities=18%  Similarity=0.157  Sum_probs=102.5

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCC----hHHHHHHHhhCCCCcccccccCCCCCC
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKK----SDLVMKLLDELPDQSLDKMTRQNKAGN   90 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~----~~~v~~ll~~~~~~~~~~~~~~~~~g~   90 (150)
                      ..++|+.|+. .|+.+.++.|+.+. +.+++..|..|++++|+++..+.    ..++++|+++|++     ++.+|..|.
T Consensus       168 g~T~L~~A~~-~g~~~~v~~LL~~~-gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-----~n~~d~~g~  240 (337)
T 4g8k_A          168 GATALMDAAE-KGHVEVLKILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-----VNVRGERGK  240 (337)
T ss_dssp             SCCHHHHHHH-HTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-----TTCCCGGGC
T ss_pred             CCcHHHHHHH-CCCHHHHHHHHhcc-CCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-----CCCcCCCCC
Confidence            3457999999 99999999888652 23367788888888888776554    3577888888888     577888888


Q ss_pred             hHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           91 TILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        91 t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ||||+|+..|+. +++++|+...+.+++.+|..|+||||+|++.|+.+++++|+++|+.
T Consensus       241 t~L~~a~~~~~~-~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  298 (337)
T 4g8k_A          241 TPLILAVEKKHL-GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  298 (337)
T ss_dssp             CHHHHHHHTTCH-HHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS
T ss_pred             CHHHHHHHhhhh-HHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            888888888886 8888888875566888888888888888888888888888888875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=1.2e-24  Score=138.51  Aligned_cols=123  Identities=12%  Similarity=0.136  Sum_probs=106.0

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccccc-cCCCcHHHHHHhhCCh----HHHHHHHhhCCCCcccccccCCCCCCh
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCVFT-IYDDTVLHVAAYTKKS----DLVMKLLDELPDQSLDKMTRQNKAGNT   91 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~-~~g~~~L~~a~~~~~~----~~v~~ll~~~~~~~~~~~~~~~~~g~t   91 (150)
                      +.++.|+. .|+.+.++.++....    +..+ ..|+||||+|+..++.    +++++|++.|++     ++.+|..|+|
T Consensus         8 ~~l~~Aa~-~g~~~~~~~l~~~~~----~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-----vn~~d~~g~T   77 (186)
T 3t8k_A            8 RTVSAAAM-LGTYEDFLELFEKGY----EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-----IKSRTKEGTT   77 (186)
T ss_dssp             SSHHHHHH-HSCHHHHHHHHHHSS----SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-----SSCCCTTCCC
T ss_pred             cHHHHHHH-cCCHHHHHHHHhcCc----ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-----CCCCCCCCCc
Confidence            45999999 999999999988743    3344 7899999999999975    589999999999     6899999999


Q ss_pred             HHHHHHHcCCc-----HHHHHHHHhhCCcccccccCCCC-CHHHHHHHcC-----CHHHHHHHHh-ccCCC
Q 043390           92 ILHETASSSHA-----LPVADKLFRKAPGLLGMRNNNGG-TALLGAAHNG-----KIEIFNFLAG-KNFRL  150 (150)
Q Consensus        92 ~l~~a~~~g~~-----~~~~~~Ll~~~~~~~~~~~~~g~-tpl~~a~~~g-----~~~~~~~L~~-~~~~l  150 (150)
                      |||+|+..++.     .+++++|++.|++ ++.+|..|+ ||||+|+..+     +.+++++|++ +|+.+
T Consensus        78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~  147 (186)
T 3t8k_A           78 LFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL  147 (186)
T ss_dssp             THHHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC
Confidence            99999998862     2689999999965 999999999 9999999954     4579999999 88864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.91  E-value=1.5e-23  Score=137.47  Aligned_cols=129  Identities=19%  Similarity=0.176  Sum_probs=86.5

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcc----------------
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSL----------------   79 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~----------------   79 (150)
                      .++++.|+. .|+.+.++.|++.+.+  ++..+..|.||||+|+..++.+++++|++.|.+++.                
T Consensus        77 ~t~L~~A~~-~~~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~  153 (240)
T 3eu9_A           77 STPLHWATR-QGHLSMVVQLMKYGAD--PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT  153 (240)
T ss_dssp             BCHHHHHHH-HTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC
T ss_pred             CChhHHHHH-cCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhC
Confidence            445777777 7777777776666433  455666677777777777777777777776655311                


Q ss_pred             -------------cccccCCC-CCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHh
Q 043390           80 -------------DKMTRQNK-AGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAG  145 (150)
Q Consensus        80 -------------~~~~~~~~-~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~  145 (150)
                                   .+++..+. .|.||||+|+..|+. +++++|++.|+. ++.++..|.|||++|++.|+.+++++|++
T Consensus       154 ~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~L~~  231 (240)
T 3eu9_A          154 HSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT-TVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVWMINHLQE  231 (240)
T ss_dssp             CSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCH-HHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             ChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCH-HHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence                         01344444 677777777777775 777777777754 77777777888888888888888888777


Q ss_pred             ccCC
Q 043390          146 KNFR  149 (150)
Q Consensus       146 ~~~~  149 (150)
                      .+.+
T Consensus       232 ~~~~  235 (240)
T 3eu9_A          232 ARQA  235 (240)
T ss_dssp             HC--
T ss_pred             hhhc
Confidence            6653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=1.3e-23  Score=125.24  Aligned_cols=96  Identities=20%  Similarity=0.193  Sum_probs=87.9

Q ss_pred             ccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCH
Q 043390           48 TIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTA  127 (150)
Q Consensus        48 ~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tp  127 (150)
                      +..|.+|||+|+..|+.+++++|++.|.+     ++.+|..|+||||+|+..|+. +++++|++.++. ++.+|..|+||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-----~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~-~~~~d~~g~tp   76 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-----VNRTLEGGRKPLHYAADCGQL-EILEFLLLKGAD-INAPDKHHITP   76 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC-----TTSCCTTSSCHHHHHHHTTCH-HHHHHHHTTTCC-TTCCCTTSCCH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC-----cCccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCC-CCcCCCCCCCH
Confidence            56778999999999999999999999988     688999999999999999996 999999999965 99999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhccCCC
Q 043390          128 LLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       128 l~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      ||+|+..|+.+++++|+++|+.+
T Consensus        77 L~~A~~~~~~~~v~~Ll~~ga~~   99 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKGADK   99 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999763

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.90  E-value=3e-23  Score=136.12  Aligned_cols=111  Identities=21%  Similarity=0.197  Sum_probs=92.3

Q ss_pred             HHHHHhCCCCC-ccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHh
Q 043390           33 IELCRKVPDHS-LCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFR  111 (150)
Q Consensus        33 ~~ll~~~~~~~-~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~  111 (150)
                      +.++..+.... .+..+..+.||||+|+..|+.+++++|++.|++     ++.+|..|.||||+|+..|+. +++++|++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~d~~g~tpLh~A~~~g~~-~~v~~Ll~   75 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-----PSQPNEEGITALHNAICGANY-SIVDFLIT   75 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-----TTCCCTTSCCHHHHHHHTTCH-HHHHHHHH
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-----CCCCCCCCCCHHHHHHHcCCH-HHHHHHHH
Confidence            45666655432 233466678899999999999999999999998     688999999999999999996 99999999


Q ss_pred             hCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390          112 KAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       112 ~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      .|++ ++.+|..|+||||+|+..|+.+++++|+++|+.+
T Consensus        76 ~ga~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~  113 (229)
T 2vge_A           76 AGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI  113 (229)
T ss_dssp             TTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             CCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            9865 9999999999999999999999999999999763

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=4e-23  Score=125.22  Aligned_cols=97  Identities=22%  Similarity=0.179  Sum_probs=89.1

Q ss_pred             cccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCC
Q 043390           47 FTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGT  126 (150)
Q Consensus        47 ~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~t  126 (150)
                      ....+.||||+|+..|+.+++++|++.|.+     ++.+|..|.||||+|+..|+. +++++|++.++. ++.+|..|.|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~g~~-~~~~d~~g~t   82 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGAD-----VNAKDEYGLTPLYLATAHGHL-EIVEVLLKNGAD-VNAVDAIGFT   82 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHHTCH-HHHHHHHHTTCC-TTCCCTTCCC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC-CCcCCCCCCC
Confidence            356678999999999999999999999988     688999999999999999996 999999999865 9999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCC
Q 043390          127 ALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       127 pl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |||+|+..|+.+++++|+++|+.+
T Consensus        83 ~L~~A~~~~~~~~v~~Ll~~g~~~  106 (136)
T 2jab_A           83 PLHLAAFIGHLEIAEVLLKHGADV  106 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999998763

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=2.8e-22  Score=119.43  Aligned_cols=94  Identities=30%  Similarity=0.405  Sum_probs=88.1

Q ss_pred             CCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHH
Q 043390           50 YDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALL  129 (150)
Q Consensus        50 ~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~  129 (150)
                      +|+||||+|+..|+.+++++|++.|.+     ++.++..|.||||+|+..++. +++++|++.+.. ++.++..|.||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~g~~-~~~~~~~g~t~l~   73 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHL-EVVKLLLEAGAD-VNAKDKNGRTPLH   73 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC-----TTCCCTTSCCHHHHHHHHTCH-HHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC-----CCCcCCCCCcHHHHHHHcCcH-HHHHHHHHcCCC-CcccCCCCCcHHH
Confidence            589999999999999999999999988     678899999999999999996 999999999865 9999999999999


Q ss_pred             HHHHcCCHHHHHHHHhccCCC
Q 043390          130 GAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       130 ~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      +|+..|+.+++++|+++|+.+
T Consensus        74 ~A~~~~~~~~~~~Ll~~g~~~   94 (126)
T 1n0r_A           74 LAARNGHLEVVKLLLEAGADV   94 (126)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHcChHHHHHHHHHcCCCC
Confidence            999999999999999998753

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.89  E-value=1e-22  Score=119.25  Aligned_cols=93  Identities=24%  Similarity=0.225  Sum_probs=83.7

Q ss_pred             ccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCC
Q 043390           44 LCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNN  123 (150)
Q Consensus        44 ~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~  123 (150)
                      ....+.+|.|+||+|+..|+.+++++|+..|++     ++.+|..|+||||+|+..|+. +++++|++.|+. ++.+|..
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----i~~~d~~g~tpLh~A~~~~~~-~~v~~Ll~~ga~-~~~~d~~   89 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGAD-----VAAKDKNGSTPLHLAARNGHL-EVVKLLLEAGAD-VXAQDKF   89 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTT
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC-ccccccC
Confidence            334588899999999999999999999999988     688999999999999999996 999999999865 9999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHH
Q 043390          124 GGTALLGAAHNGKIEIFNFL  143 (150)
Q Consensus       124 g~tpl~~a~~~g~~~~~~~L  143 (150)
                      |.||||+|+..|+.+++++|
T Consensus        90 g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           90 GKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             SCCHHHHHHHHTCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHh
Confidence            99999999999999999987

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.89  E-value=9.8e-22  Score=135.22  Aligned_cols=124  Identities=23%  Similarity=0.201  Sum_probs=113.0

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCcccccc-CCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTI-YDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~-~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      .+.|+.|+. .|+.+.|+.|++.+.+  ++.++. .|+||||+|+..|+.+++++|+++|++     ++.++..+.+|++
T Consensus        26 ~t~L~~Av~-~g~~~~V~~LL~~Gad--vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-----~~~~~~~~~~~~~   97 (337)
T 4g8k_A           26 NHLLIKAVQ-NEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-----PVLRKKNGATPFI   97 (337)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHH
T ss_pred             ChHHHHHHH-cCCHHHHHHHHHCCCC--CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-----hhhhccCCCchhH
Confidence            456999999 9999999999999765  566654 599999999999999999999999998     5889999999999


Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      .++..+.. .++..++..+.. ++..|..|.|||++|+..|+.+++++|+++|+.
T Consensus        98 ~~~~~~~~-~~~~~~~~~~~~-~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~  150 (337)
T 4g8k_A           98 LAAIAGSV-KLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN  150 (337)
T ss_dssp             HHHHHTCH-HHHHHHHTTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHhcccc-hhhHHhhhccch-hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999996 999999999865 999999999999999999999999999999875

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=1.2e-22  Score=132.34  Aligned_cols=98  Identities=29%  Similarity=0.283  Sum_probs=90.2

Q ss_pred             cccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCC
Q 043390           47 FTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGT  126 (150)
Q Consensus        47 ~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~t  126 (150)
                      .+..|.||||+|+..|+.+++++|++.|++     ++.+|..|+||||+|+..|+. +++++|++.++.+++.+|..|+|
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~~g~~~~~~d~~g~t  142 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVG-----VNGLDKAGSTALYWACHGGHK-DIVEMLFTQPNIELNQQNKLGDT  142 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCH-HHHHHHTTSTTCCCCCCCTTSCC
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCC-----ccccCCCCCCHHHHHHHcCCH-HHHHHHHcCCCCCccccCCCCCC
Confidence            356789999999999999999999999988     688999999999999999996 99999999933559999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCC
Q 043390          127 ALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       127 pl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |||+|+..|+.+++++|+++|+.+
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~ga~~  166 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAKGART  166 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999863

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=1.7e-22  Score=128.21  Aligned_cols=95  Identities=22%  Similarity=0.149  Sum_probs=87.9

Q ss_pred             ccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCccccccc-CCCCC
Q 043390           48 TIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRN-NNGGT  126 (150)
Q Consensus        48 ~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~-~~g~t  126 (150)
                      +..|.||||+|+..|+.++++.|+. +.+     ++.+|..|.||||+|+..|+. +++++|++.|+. ++.++ ..|+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-----~~~~d~~g~t~L~~A~~~~~~-~~v~~Ll~~ga~-~~~~~~~~g~t  112 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD-----VDAVDENGRTALLFVAGLGSD-KCVRLLAEAGAD-LDHRDMRGGLT  112 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-----TTCCCTTSCCHHHHHHHHTCH-HHHHHHHHTTCC-TTCCCSSSSCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-----CCCcCCCCCCHHHHHHHcCCH-HHHHHHHHcCCC-CCcCCCCCCCC
Confidence            5678999999999999999999999 777     688999999999999999996 999999999965 88888 88999


Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCC
Q 043390          127 ALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       127 pl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |||+|+..|+.+++++|+++|+.+
T Consensus       113 pL~~A~~~~~~~~v~~Ll~~ga~~  136 (183)
T 3deo_A          113 ALHMAAGYVRPEVVEALVELGADI  136 (183)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred             HHHHHHhcCcHHHHHHHHHcCCCC
Confidence            999999999999999999998763

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.87  E-value=1.7e-22  Score=125.09  Aligned_cols=98  Identities=19%  Similarity=0.120  Sum_probs=87.6

Q ss_pred             cccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCC
Q 043390           45 CVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNG  124 (150)
Q Consensus        45 ~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g  124 (150)
                      ...+..|.||||+|+..|+.+++++|++.|++     ++.++..|.||||+|+ .|+. +++++|++.|+. ++.++..|
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~-~~~~-~~v~~Ll~~g~~-~~~~d~~g   77 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGAN-----PNAPNSYGRRPIQVMM-MGSA-RVAELLLLHGAE-PNCADPAT   77 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCC-----TTCCCSSSCCTTTSSC-TTCH-HHHHHHHTTTCC-CCCCCTTT
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHH-cCCH-HHHHHHHHcCCC-CCCcCCCC
Confidence            34578899999999999999999999999988     6889999999999985 8886 999999999865 99999999


Q ss_pred             CC-HHHHHHHcCCHHHHHHHHhccCCC
Q 043390          125 GT-ALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       125 ~t-pl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      .| |||+|+..|+.+++++|+++|+.+
T Consensus        78 ~ttpL~~A~~~~~~~~v~~Ll~~ga~~  104 (156)
T 1bi7_B           78 LTRPVHDAAREGFLDTLVVLHRAGARL  104 (156)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCS
T ss_pred             CcHHHHHHHHCCCHHHHHHHHHcCCCC
Confidence            99 999999999999999999998753

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.87  E-value=2.2e-22  Score=138.26  Aligned_cols=114  Identities=13%  Similarity=0.052  Sum_probs=96.7

Q ss_pred             hcCHHHHHHHHHhCCCCCccc-cccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCC---
Q 043390           26 KQDEQKVIELCRKVPDHSLCV-FTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSH---  101 (150)
Q Consensus        26 ~~~~~~~~~ll~~~~~~~~~~-~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~---  101 (150)
                      .+..+.++.++..  +.+++. .|..|+||||+|+..|+.+++++|++.|++     ++.+|..|+||||+|+..|+   
T Consensus       107 ~~~~~~~~~l~~~--g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-----~n~~d~~g~TpLh~A~~~g~~~~  179 (327)
T 1sw6_A          107 SLLQEVNDAFPNT--QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-----RLYGDNMGESCLVKAVKSVNNYD  179 (327)
T ss_dssp             HHHHHHHHHCTTS--CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTBCCTTCCCHHHHHHHSSHHHH
T ss_pred             hhHHHHHHHHHhc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHhccccc
Confidence            3333344444443  344777 799999999999999999999999999998     68899999999999999987   


Q ss_pred             cHHHHHHHHhhCCcccccccCCCCCHHHHHHH----cCCHHHHHHHHhcc
Q 043390          102 ALPVADKLFRKAPGLLGMRNNNGGTALLGAAH----NGKIEIFNFLAGKN  147 (150)
Q Consensus       102 ~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~----~g~~~~~~~L~~~~  147 (150)
                      . ++++.|++.+..+++.+|..|+||||+|+.    .|+.+++++|++.+
T Consensus       180 ~-~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~  228 (327)
T 1sw6_A          180 S-GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL  228 (327)
T ss_dssp             T-TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             H-HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHH
Confidence            6 778888888756699999999999999999    99999999999874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.87  E-value=2.6e-23  Score=145.10  Aligned_cols=127  Identities=17%  Similarity=0.184  Sum_probs=102.4

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCC-CccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDH-SLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~-~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      .++||.|+. .|+.+.++.|+..+... .....+..|.||||+|+..|+.+++++|+++|++....+++.++   .||||
T Consensus        93 ~T~Lh~Aa~-~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~TpLh  168 (376)
T 2aja_A           93 EVICFVAAI-TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFR  168 (376)
T ss_dssp             HHHHHHHHH-HCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HHHHH
T ss_pred             CCHHHHHHH-cCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CCHHH
Confidence            467999999 99999999999875522 12234567789999999999999999999999752111233333   89999


Q ss_pred             HHHHcCCcHHHHHHHHhhCCccccc--ccCCCCCHHHHHH-HcCCHHHHHHHHhccC
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGM--RNNNGGTALLGAA-HNGKIEIFNFLAGKNF  148 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~--~~~~g~tpl~~a~-~~g~~~~~~~L~~~~~  148 (150)
                      +|+..|+. +++++|++.|+. ++.  .|..|.||||+|+ ..|+.+++++|++.|+
T Consensus       169 ~Aa~~G~~-eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          169 LAAENGHL-HVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  223 (376)
T ss_dssp             HHHHTTCH-HHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             HHHHCCCH-HHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence            99999996 999999999965 666  8888999999999 9999999999998763

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=3.8e-22  Score=131.93  Aligned_cols=95  Identities=22%  Similarity=0.149  Sum_probs=87.8

Q ss_pred             ccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCccccccc-CCCCC
Q 043390           48 TIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRN-NNGGT  126 (150)
Q Consensus        48 ~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~-~~g~t  126 (150)
                      +..|.||||+|+..|+.++++.|+. +.+     ++.+|..|.||||+|+..|+. +++++|++.|+. ++.++ ..|+|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-----~~~~d~~g~t~L~~A~~~g~~-~~v~~Ll~~ga~-~~~~~~~~g~t  113 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRD-----VDAVDENGRTALLFVAGLGSD-KCVRLLAEAGAD-LDHRDMRGGLT  113 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCC-----TTCBCTTSCBHHHHHHHHTCH-HHHHHHHHTTCC-TTCCCSSSCCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCC-----CCCcCCCCCCHHHHHHHCCCH-HHHHHHHHcCCC-CCcCCCCCCCC
Confidence            4578999999999999999999999 777     688999999999999999996 999999999965 88888 78999


Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCC
Q 043390          127 ALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       127 pl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |||+|+..|+.+++++|+++|+.+
T Consensus       114 ~L~~A~~~g~~~~v~~Ll~~ga~~  137 (244)
T 3ui2_A          114 ALHMAAGYVRPEVVEALVELGADI  137 (244)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC
Confidence            999999999999999999999863

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=6.6e-21  Score=108.20  Aligned_cols=90  Identities=26%  Similarity=0.228  Sum_probs=82.8

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHE   95 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~   95 (150)
                      .++||.|+. .|+.+.++.|++.+.+  ++.+|..|+||||+|+..++.+++++|++.|++     ++.+|..|+||||+
T Consensus         3 ~t~L~~A~~-~~~~~~v~~Ll~~g~~--~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-----~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            3 RTPLHLAAR-NGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-----VNAKDKNGRTPLHL   74 (93)
T ss_dssp             CCHHHHHHH-HTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHH
T ss_pred             CcHHHHHHH-cCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCCHHHH
Confidence            456999999 9999999999998655  778899999999999999999999999999998     68899999999999


Q ss_pred             HHHcCCcHHHHHHHHhhCC
Q 043390           96 TASSSHALPVADKLFRKAP  114 (150)
Q Consensus        96 a~~~g~~~~~~~~Ll~~~~  114 (150)
                      |+..|+. +++++|++.|+
T Consensus        75 A~~~~~~-~~~~~Ll~~ga   92 (93)
T 1n0q_A           75 AARNGHL-EVVKLLLEAGA   92 (93)
T ss_dssp             HHHTTCH-HHHHHHHHTTC
T ss_pred             HHHcCCH-HHHHHHHHcCC
Confidence            9999996 99999999884

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=2e-21  Score=114.38  Aligned_cols=106  Identities=25%  Similarity=0.244  Sum_probs=93.8

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChH
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~   92 (150)
                      ....+.|+.|+. .|+.+.++.|+..+.+  ++..|..|+||||+|+..++.+++++|++.|++     ++.+|..|.||
T Consensus         7 ~~g~t~L~~A~~-~~~~~~~~~Ll~~g~~--~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~d~~g~tp   78 (115)
T 2l6b_A            7 KDGNTPLHNAAK-NGHAEEVKKLLSKGAD--VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-----VNARSKDGNTP   78 (115)
T ss_dssp             CSSCCHHHHHHH-HTCHHHHHHHTTTTCC--SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-----TTCCCTTCCCT
T ss_pred             CCCCCHHHHHHH-cCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-----CcccCCCCCCH
Confidence            445667999999 9999999999988654  778899999999999999999999999999998     68899999999


Q ss_pred             HHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHH
Q 043390           93 LHETASSSHALPVADKLFRKAPGLLGMRNNNGGTAL  128 (150)
Q Consensus        93 l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl  128 (150)
                      ||+|+..|+. +++++|++.|++ ++.++..|.+|-
T Consensus        79 l~~A~~~~~~-~~~~~Ll~~ga~-~n~~~~~~~~~~  112 (115)
T 2l6b_A           79 EHLAKKNGHH-EIVKLLDAKGAD-VNARSWGSSHHH  112 (115)
T ss_dssp             THHHHTTTCH-HHHHHHHTTSSS-HHHHSCCCC---
T ss_pred             HHHHHHCCCH-HHHHHHHHcCCC-CCcCCccccccc
Confidence            9999999996 999999999965 999999998874

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=2.5e-21  Score=131.64  Aligned_cols=110  Identities=19%  Similarity=0.040  Sum_probs=90.8

Q ss_pred             hhhcCHHHHHHHHhh---cCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCC
Q 043390           12 KNKINSELYNALMIK---QDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKA   88 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~---~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~   88 (150)
                      +....++||.|+. .   ++.+.++.|+..+.+  ++.+|..|+||||+|+..|+.+++++|++.|++     ++.+|..
T Consensus       187 ~~~g~t~Lh~A~~-~~~~~~~~iv~~Ll~~gad--vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-----~~~~d~~  258 (301)
T 2b0o_E          187 QAPEELVLHLAVK-VANQASLPLVDFIIQNGGH--LDAKAADGNTALHYAALYNQPDCLKLLLKGRAL-----VGTVNEA  258 (301)
T ss_dssp             CSCEECHHHHHHH-TCCTTTHHHHHHHHHHSSC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----CSCCCTT
T ss_pred             CCCCccHHHHHHH-hcccCcHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCC
Confidence            3345567999998 7   889999999998655  778899999999999999999999999999998     6889999


Q ss_pred             CChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCH
Q 043390           89 GNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKI  137 (150)
Q Consensus        89 g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~  137 (150)
                      |.||||+|+..|+. +++++|++.++.       .|.||||+|++.|+.
T Consensus       259 G~TpL~~A~~~~~~-~iv~~Ll~~ga~-------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          259 GETALDIARKKHHK-ECEELLEQAQAG-------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             SCCHHHHHHHHTCH-HHHHHHHHHHHH-------TTSSCCC--------
T ss_pred             CCCHHHHHHHcCCH-HHHHHHHHhcCC-------CCCChhHHHHhcCCc
Confidence            99999999999996 999999998843       478999999998874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.81  E-value=3.4e-22  Score=139.49  Aligned_cols=118  Identities=14%  Similarity=0.056  Sum_probs=100.1

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCC-ccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCccccccc--CCCCCCh
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHS-LCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTR--QNKAGNT   91 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~-~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~--~~~~g~t   91 (150)
                      ..++|+.|+. .|+.+.++.|+..+++.. .+..+.+ +||||+|+..|+.+++++|+++|++     ++.  +|..|.|
T Consensus       128 ~~tpL~~Aa~-~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~-----~~~~~~d~~g~T  200 (376)
T 2aja_A          128 NYQAFRLAAE-NGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT-----EATAMIQAENYY  200 (376)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG-----GHHHHHHHHHHH
T ss_pred             CCCHHHHHHH-cCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc-----cchhccCCCCCC
Confidence            3458999999 999999999999875421 1223333 8999999999999999999999987     455  7888999


Q ss_pred             HHHHHH-HcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390           92 ILHETA-SSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        92 ~l~~a~-~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      |||+|+ ..|+. +++++|++.|+        .|.|||++|+..|+.+++++|+++|+
T Consensus       201 pL~~Aa~~~G~~-eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga  249 (376)
T 2aja_A          201 AFRWAAVGRGHH-NVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVN  249 (376)
T ss_dssp             HHHHHHSTTCCH-HHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHCCCH-HHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCc
Confidence            999999 99996 99999998652        17899999999999999999999875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.79  E-value=6e-19  Score=122.79  Aligned_cols=94  Identities=14%  Similarity=0.130  Sum_probs=86.4

Q ss_pred             CCCcHHHHHHhh-CChHHHHHHHhhCCCCcccccccCC--CCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCC
Q 043390           50 YDDTVLHVAAYT-KKSDLVMKLLDELPDQSLDKMTRQN--KAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGT  126 (150)
Q Consensus        50 ~g~~~L~~a~~~-~~~~~v~~ll~~~~~~~~~~~~~~~--~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~t  126 (150)
                      .+.++||.|+.. ++.++++.|+..|++     ++..+  ..|.||||+|+..|+. +++++|++.|+. ++.+|..|+|
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-----vn~~~~~~~g~TpLh~Aa~~g~~-~iv~~LL~~Gad-vn~~d~~G~T  270 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGAD-----VNWVNGGQDNATPLIQATAANSL-LACEFLLQNGAN-VNQADSAGRG  270 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCC-----TTCCCTTTTCCCHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCC-----CCccccccCCCCHHHHHHHCCCH-HHHHHHHHcCCC-CCCCCCCCCC
Confidence            345799999999 999999999999998     56677  8999999999999996 999999999965 9999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCC
Q 043390          127 ALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       127 pl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |||+|+..|+.+++++|+++|+.+
T Consensus       271 pLh~A~~~g~~~~v~~LL~~Gad~  294 (368)
T 3jue_A          271 PLHHATILGHTGLACLFLKRGADL  294 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCcHHHHHHHHHCcCCC
Confidence            999999999999999999999863

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=2.1e-18  Score=100.79  Aligned_cols=89  Identities=22%  Similarity=0.249  Sum_probs=79.4

Q ss_pred             hhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCCh
Q 043390           12 KNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNT   91 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t   91 (150)
                      +....+.||.|+. .|+.+.++.|+..+.+  ++.+|..|+||||+|+..++.+++++|+.+|++     ++.+|..|.|
T Consensus        21 ~~~g~t~L~~A~~-~g~~~~v~~Ll~~g~~--i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-----~~~~d~~g~t   92 (110)
T 2zgd_A           21 GSDLGKKLLEAAR-AGQDDEVRILMANGAD--VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-----VXAQDKFGKT   92 (110)
T ss_dssp             -CCHHHHHHHHHH-HTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCC
T ss_pred             CCccchHHHHHHH-cCCHHHHHHHHHcCCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----ccccccCCCc
Confidence            3445667999999 9999999999988544  778899999999999999999999999999998     6889999999


Q ss_pred             HHHHHHHcCCcHHHHHHH
Q 043390           92 ILHETASSSHALPVADKL  109 (150)
Q Consensus        92 ~l~~a~~~g~~~~~~~~L  109 (150)
                      |||+|+..|+. +++++|
T Consensus        93 pl~~A~~~~~~-~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNE-DLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCH-HHHHHH
T ss_pred             HHHHHHHcCCH-HHHHHh
Confidence            99999999996 999876

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.78  E-value=2.7e-18  Score=123.84  Aligned_cols=93  Identities=17%  Similarity=0.212  Sum_probs=84.4

Q ss_pred             CCcHHHHHHhhCChHHHHHHHhhCCCCcccccccC------CCCCChHHHHHHH---cCCcHHHHHHHHhhCCccccccc
Q 043390           51 DDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQ------NKAGNTILHETAS---SSHALPVADKLFRKAPGLLGMRN  121 (150)
Q Consensus        51 g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~------~~~g~t~l~~a~~---~g~~~~~~~~Ll~~~~~~~~~~~  121 (150)
                      ..+.||.|+..|+.+.++.|+..|++     ++..      +..|.||||+|+.   .|+. +++++|++.|++ ++.+|
T Consensus       132 ~~~~L~~A~~~g~~~~v~~ll~~g~~-----~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~-~~v~~Ll~~ga~-vn~~d  204 (497)
T 3lvq_E          132 EPQRLWTAICNRDLLSVLEAFANGQD-----FGQPLPGPDAQAPEELVLHLAVKVANQASL-PLVDFIIQNGGH-LDAKA  204 (497)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHHHTTCC-----SSSCBCCSSSCCSCBCHHHHHHHTCCTTTH-HHHHHHHHHSCC-TTCCC
T ss_pred             cHHHHHHHHhccCHHHHHHHHhhccc-----ccCCCCCcccccccchHHHHHHHhcccccH-HHHHHHHHcCCC-CCccC
Confidence            34679999999999999999999998     4544      8899999999966   8886 999999999965 99999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390          122 NNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       122 ~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      ..|+||||+|+..|+.+++++|+++|+.+
T Consensus       205 ~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~  233 (497)
T 3lvq_E          205 ADGNTALHYAALYNQPDCLKLLLKGRALV  233 (497)
T ss_dssp             SSSCCHHHHHTTTTCHHHHHHHHHTCCCC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999999999864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.77  E-value=7.9e-18  Score=113.24  Aligned_cols=97  Identities=18%  Similarity=0.156  Sum_probs=85.8

Q ss_pred             CcHHHHHHhhCChHHHHHHHhhCCCCcccc-cccCCCCCChHHHHHHHc---CCcHHHHHHHHhhCCcccccccCCCCCH
Q 043390           52 DTVLHVAAYTKKSDLVMKLLDELPDQSLDK-MTRQNKAGNTILHETASS---SHALPVADKLFRKAPGLLGMRNNNGGTA  127 (150)
Q Consensus        52 ~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~-~~~~~~~g~t~l~~a~~~---g~~~~~~~~Ll~~~~~~~~~~~~~g~tp  127 (150)
                      .++|+.|+..++.+.+..++..|.+.+... ++..+..|.||||+|+..   |+. +++++|++.|++ ++.+|..|.||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~-~~v~~Ll~~ga~-in~~d~~g~Tp  208 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL-HIVDFLVQNSGN-LDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTH-HHHHHHHHHCSC-TTCCCTTCCCH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchH-HHHHHHHHCCCC-ccccCCCCCCH
Confidence            358999999999999999999998853222 455688999999999999   786 999999999965 99999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhccCCC
Q 043390          128 LLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       128 l~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      ||+|+..|+.+++++|+++|+.+
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~  231 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASI  231 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.003
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.003
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 3e-06
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 7/91 (7%)

Query: 53  TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRK 112
           T LHVA++     +V  LL              N    T LH  A + H      K   +
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGAS-----PNVSNVKVETPLHMAARAGHTEVA--KYLLQ 54

Query: 113 APGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
               +  +  +  T L  AA  G   +   L
Sbjct: 55  NKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 85

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 10/133 (7%)

Query: 13  NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDD--TVLHVAAYTKKSDLVMKL 70
           N  N      L +   E   + +   +  H + V        T LHVA++     LV   
Sbjct: 258 NLGNKSGLTPLHLVAQEGH-VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV--- 313

Query: 71  LDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLG 130
             +   Q    +  + K G + LH+ A   H   V   L  K        +++G T L  
Sbjct: 314 --KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIV--TLLLKNGASPNEVSSDGTTPLAI 369

Query: 131 AAHNGKIEIFNFL 143
           A   G I + + L
Sbjct: 370 AKRLGYISVTDVL 382

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 85  QNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
           + + G T L       H L +  +L  +    +   +++G TALL A      +I   L
Sbjct: 215 RGERGKTPLILAVEKKH-LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 22/92 (23%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 52  DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFR 111
           DT LH+A   +    +  LL        + +  QN  G T LH  A    A  V      
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAG--HEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67

Query: 112 KAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
            A  L+  R  +    L  A           L
Sbjct: 68  GAGVLVAERGGHTALHL--ACRVRAHTCACVL 97

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 2/64 (3%)

Query: 80  DKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEI 139
               +Q++ G T +   A       V      +    +   +    TA   A  N    I
Sbjct: 212 SNKDKQDEDGKTPIMLAAQEGRIEVV--MYLIQQGASVEAVDATDHTARQLAQANNHHNI 269

Query: 140 FNFL 143
            +  
Sbjct: 270 VDIF 273

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 9/124 (7%)

Query: 29  EQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKA 88
           +    E         L +    + T+LH    T              D  +  + ++   
Sbjct: 155 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 214

Query: 89  --------GNTILHETASSSHALPVADKLFRKAPG-LLGMRNNNGGTALLGAAHNGKIEI 139
                     +  ++         + +   +     +L  +++NG T L  AA  G I I
Sbjct: 215 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 274

Query: 140 FNFL 143
            + L
Sbjct: 275 VDAL 278

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (75), Expect = 0.004
 Identities = 10/55 (18%), Positives = 13/55 (23%), Gaps = 2/55 (3%)

Query: 89  GNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL 143
           G T LH      +   V+  L   A          G +            I   L
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGADV--NRVTYQGYSPYQLTWGRPSTRIQQQL 197

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.89
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.89
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.88
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.87
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.87
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.83
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.8
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.8
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.77
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.76
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.65

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.8e-27  Score=144.88  Aligned_cols=123  Identities=21%  Similarity=0.192  Sum_probs=108.1

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCC----ccccccCCCcHHHHHHhh---CChHHHHHHHhhCCCCcccccccCCCCCC
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHS----LCVFTIYDDTVLHVAAYT---KKSDLVMKLLDELPDQSLDKMTRQNKAGN   90 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~----~~~~~~~g~~~L~~a~~~---~~~~~v~~ll~~~~~~~~~~~~~~~~~g~   90 (150)
                      .++.|++ .++...+.+++..+.+..    ....+..|+||||+|+..   ++.+++++|+++|++     ++.+|..|+
T Consensus         9 ~L~~Av~-~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-----in~~d~~g~   82 (154)
T d1dcqa1           9 SLCEAVK-TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-----LDKQTGKGS   82 (154)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-----TTCCCTTCC
T ss_pred             HHHHHHH-hCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-----hhhhhhhhc
Confidence            4889999 999999999988755422    222367799999999975   568999999999998     689999999


Q ss_pred             hHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390           91 TILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        91 t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      ||||+|+..|+. +++++|++.|++ ++.+|..|.||||+|++.|+.+++++|++.+.
T Consensus        83 TpLh~A~~~~~~-~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          83 TALHYCCLTDNA-ECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             CHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccc-cccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            999999999996 999999999865 99999999999999999999999999998765

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-28  Score=144.17  Aligned_cols=118  Identities=16%  Similarity=0.108  Sum_probs=106.7

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCC-hHHHH
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGN-TILHE   95 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~-t~l~~   95 (150)
                      ..||.|+. .|+.+.++.|++.+.+  ++.++..|.||+|.|+ .|+.+++++|+++|++     ++.++..+. ||||+
T Consensus         5 ~~L~~Aa~-~G~~~~v~~Ll~~gad--~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-----~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           5 DWLATAAA-RGRVEEVRALLEAGAN--PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-----PNCADPATLTRPVHD   75 (125)
T ss_dssp             THHHHHHH-HTCHHHHHHHHTTTCC--TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-----CCCCCTTTCCCHHHH
T ss_pred             hHHHHHHH-CCCHHHHHHHHHcCCc--cccccccccccccccc-cccccccccccccccc-----ccccccccccccccc
Confidence            45999999 9999999999998654  7788999999999764 7899999999999998     577888775 69999


Q ss_pred             HHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHh
Q 043390           96 TASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAG  145 (150)
Q Consensus        96 a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~  145 (150)
                      |+..|+. +++++|++.|+. ++.+|..|+||||+|+++|+.+++++|++
T Consensus        76 A~~~g~~-~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          76 AAREGFL-DTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHTCH-HHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccc-cccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999996 999999999965 99999999999999999999999999985

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.3e-28  Score=145.35  Aligned_cols=122  Identities=20%  Similarity=0.140  Sum_probs=108.3

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETA   97 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~   97 (150)
                      .|+.|+. .|+.+.++.+++.+.+  ++.+|..|+||||+|+..++.++++++++.|++     ++.+|.+|+||||+|+
T Consensus         4 lL~~A~~-~G~~~~v~~Ll~~g~d--~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-----~~~~d~~g~tpLh~A~   75 (130)
T d1ycsb1           4 LLLDSSL-EGEFDLVQRIIYEVDD--PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-----VNAADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHH-HTCHHHHHHHTSTTSS--CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-----TTCCCTTCCCHHHHHH
T ss_pred             HHHHHHH-cCCHHHHHHHHHcCCC--ccccccccccccccccccccccccccccccccc-----cccccccCcccccccc
Confidence            4788999 9999999999998655  788999999999999999999999999999988     6889999999999999


Q ss_pred             HcCCcHHHHHHHHhhCCcccccccC-CCCCHHHHH--HHcCCHHHHHHHHhccCC
Q 043390           98 SSSHALPVADKLFRKAPGLLGMRNN-NGGTALLGA--AHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        98 ~~g~~~~~~~~Ll~~~~~~~~~~~~-~g~tpl~~a--~~~g~~~~~~~L~~~~~~  149 (150)
                      ..|+. +++++|++.|++ ++..+. .++||++++  ++.|+.+++++|++.+.+
T Consensus        76 ~~g~~-~~v~~Ll~~ga~-v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~~  128 (130)
T d1ycsb1          76 SCNNV-QVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK  128 (130)
T ss_dssp             HTTCH-HHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH
T ss_pred             hhhHH-HHHHHHHHcCCC-cccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHHh
Confidence            99996 999999999965 877664 588887765  567899999999987654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.4e-28  Score=144.61  Aligned_cols=107  Identities=22%  Similarity=0.170  Sum_probs=98.9

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHE   95 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~   95 (150)
                      +++|++|+. .|+.+.++.|++.+.+  ++.++..|+||||+|+..++.+++++++..|++     ++.+|..|+||||+
T Consensus         3 ~tpL~~A~~-~g~~~~v~~Ll~~g~d--~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-----in~~d~~g~tpLh~   74 (118)
T d1myoa_           3 DKEFMWALK-NGDLDEVKDYVAKGED--VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-----INAPDKHHITPLLS   74 (118)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHTTTCC--CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-----TTCCSSSCSCHHHH
T ss_pred             ChHHHHHHH-CCCHHHHHHHHHhhhc--cccccccccccccccccccccccccccccccce-----eeecccccccchhh
Confidence            357999999 9999999999998654  778899999999999999999999999999998     68899999999999


Q ss_pred             HHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHH
Q 043390           96 TASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAA  132 (150)
Q Consensus        96 a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~  132 (150)
                      |+..|+. +++++|++.|++ ++.+|.+|.||||+|.
T Consensus        75 A~~~~~~-~~v~~Ll~~Gad-~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          75 AVYEGHV-SCVKLLLSKGAD-KTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHTTTCC-HHHHHHHTTCCC-SSSSSSSTCCCCCTCS
T ss_pred             hhhcCch-hhhhhhhccccc-ceeeCCCCCCHHHHHh
Confidence            9999997 999999999965 9999999999999883

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.9e-26  Score=141.28  Aligned_cols=126  Identities=22%  Similarity=0.299  Sum_probs=110.7

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcc-----------------
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSL-----------------   79 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~-----------------   79 (150)
                      .+||.|+. .|+.+.++.|++.+.+  ++.+|..|+||||+|+ .++.+++++|++.|++++.                 
T Consensus         3 ~~Lh~Aa~-~g~~~~v~~Ll~~g~d--~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAA-RGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHH-HTCHHHHHHHTTSCCC--TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHH-cCCHHHHHHHHHCCCC--cCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccc
Confidence            46899999 9999999999998655  6788999999999875 6899999999999887521                 


Q ss_pred             -----------cccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 043390           80 -----------DKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKN  147 (150)
Q Consensus        80 -----------~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~  147 (150)
                                 ..++..+..|.+|+|+|+..++. +++++|++.++.+++.+|.+|+||||+|++.++.+++++|+++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL-RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccc-cccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence                       13467788899999999999996 99999999998778999999999999999999999999999987

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.3e-25  Score=145.27  Aligned_cols=130  Identities=20%  Similarity=0.176  Sum_probs=112.8

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcc-----------------
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSL-----------------   79 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~-----------------   79 (150)
                      .+||+|+. .|+.+.++.|+...+. .++.+|.+|+||||+|+..|+.+++++|+++|++++.                 
T Consensus         2 ~pLh~A~~-~g~~~~v~~Ll~~~~~-~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           2 YPLHQACM-ENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CHHHHHHH-HTCHHHHHHHHHHCGG-GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HhHHHHHH-cCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            36999999 9999999999987543 4778899999999999999999999999999876421                 


Q ss_pred             -------------------------------------------------cccccCCCCCChHHHHHHHcCCcHHHHHHHH
Q 043390           80 -------------------------------------------------DKMTRQNKAGNTILHETASSSHALPVADKLF  110 (150)
Q Consensus        80 -------------------------------------------------~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll  110 (150)
                                                                       ...+.++..|+||||+|+..|+. +++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~Ll  158 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL-KLIELLC  158 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH-HHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccc-ccccccc
Confidence                                                             02345778899999999999996 9999999


Q ss_pred             hhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHh-ccCC
Q 043390          111 RKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAG-KNFR  149 (150)
Q Consensus       111 ~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~-~~~~  149 (150)
                      +.+..+++.+|.+|+||||+|+..|+.+++++|++ .|+.
T Consensus       159 ~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad  198 (229)
T d1ixva_         159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE  198 (229)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC
T ss_pred             ccccccccccccccCCchhhhcccccHHHHHHHHHhcCCC
Confidence            99877789999999999999999999999999996 4765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.1e-25  Score=135.42  Aligned_cols=122  Identities=17%  Similarity=0.135  Sum_probs=106.1

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCc-----------------
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQS-----------------   78 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~-----------------   78 (150)
                      .++|+.|++ .|+.+.++.|+..+++  .+ .|..|+||||+|+..++.+++..++.......                 
T Consensus         3 ~t~L~~Aa~-~g~~~~v~~LL~~ga~--~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAAR-AGQDDEVRILMANGAP--FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHH-HTCHHHHHHHHHHTCC--CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHH-CCCHHHHHHHHHcCCC--cc-cccCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence            367999999 9999999999999765  33 58999999999999999999888887655421                 


Q ss_pred             -----------ccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHH
Q 043390           79 -----------LDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL  143 (150)
Q Consensus        79 -----------~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L  143 (150)
                                 ..+.+.++..|+||||+|+..|+. +++++|++.|++ ++.+|.+|.||||+|+.+|+.+++++|
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~-~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ-EVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchh-heeeeccccccC-CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence                       114567889999999999999996 999999999965 999999999999999999999999987

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.6e-25  Score=145.20  Aligned_cols=61  Identities=21%  Similarity=0.191  Sum_probs=35.1

Q ss_pred             CCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           87 KAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        87 ~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ..|.||||+|+..|+. +++++|++.|+. ++.+|..|.||||+|+..++.+++++|+++||.
T Consensus       190 ~~g~TpL~~A~~~~~~-~~v~~Ll~~gad-in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         190 TCGRTPLHLAVEAQAA-SVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             TTCCCHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccccccccccccHH-HHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            3455555555555553 555555555533 566666666666666666666666666666654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.3e-25  Score=147.33  Aligned_cols=134  Identities=19%  Similarity=0.130  Sum_probs=114.5

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCc--------------
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQS--------------   78 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~--------------   78 (150)
                      ....++|+.|+. .|+.+.++.|++.+.+  ++..|..|.||||+|+..++.+++++++..+....              
T Consensus        43 ~~g~TpL~~A~~-~g~~~iv~~Ll~~ga~--i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  119 (255)
T d1oy3d_          43 DLGQTALHLAAI-LGEASTVEKLYAAGAG--VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC  119 (255)
T ss_dssp             TTSCCHHHHHHH-HTCHHHHHHHHHTTCC--SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------
T ss_pred             CCCCCccchHHh-hccccccccccccccc--ccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhh
Confidence            344568999999 9999999999998655  77889999999999999999999999987654310              


Q ss_pred             ----------------------------ccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHH
Q 043390           79 ----------------------------LDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLG  130 (150)
Q Consensus        79 ----------------------------~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~  130 (150)
                                                  ...++.++..|.||||+|+..++. +++++|++.+.......+..|.||||+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~g~TpL~~  198 (255)
T d1oy3d_         120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA-EMVRLLRDAGADLNKPEPTCGRTPLHL  198 (255)
T ss_dssp             ------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCH-HHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             cccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccccccc-ccccchhcccccccccccccccccccc
Confidence                                        114578999999999999999996 999999999977555667889999999


Q ss_pred             HHHcCCHHHHHHHHhccCCC
Q 043390          131 AAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       131 a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |++.|+.+++++|+++|+.+
T Consensus       199 A~~~~~~~~v~~Ll~~gadi  218 (255)
T d1oy3d_         199 AVEAQAASVLELLLKAGADP  218 (255)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT
T ss_pred             cccccHHHHHHHHHHCCCCC
Confidence            99999999999999998763

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.1e-24  Score=139.36  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=83.6

Q ss_pred             hcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHH
Q 043390           26 KQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPV  105 (150)
Q Consensus        26 ~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~  105 (150)
                      .++.+.++.++..+.  +++..|..|+||||+|+..++.+++++|+++|.+     ++.++..|.||||+|+..++. ++
T Consensus        80 ~~~~~i~~~Ll~~~~--d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-----~~~~~~~~~t~L~~a~~~~~~-~~  151 (223)
T d1uoha_          80 AGRDEIVKALLGKGA--QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-----PDAKDHYEATAMHRAAAKGNL-KM  151 (223)
T ss_dssp             HTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCH-HH
T ss_pred             ccccchhHHHhccCc--eeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC-----CCCcCCCCCccchhhhhcCCc-ch
Confidence            344444444444432  3556778888888888888888888888888877     466777777788887777775 77


Q ss_pred             HHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390          106 ADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       106 ~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      +++|...+.. ++.+|..|+||||+|+..|+.+++++|+++|+.
T Consensus       152 ~~~L~~~~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad  194 (223)
T d1uoha_         152 IHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS  194 (223)
T ss_dssp             HHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             hhhhccccce-eeeccCCCCceeccccccCcHHHHHHHHHCCCC
Confidence            7777777754 777777888888888888888888888877764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.2e-25  Score=142.28  Aligned_cols=123  Identities=20%  Similarity=0.158  Sum_probs=111.0

Q ss_pred             hhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCCh
Q 043390           12 KNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNT   91 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t   91 (150)
                      +....++|+.|+. .|+.+.++.|++.+.+  ++..+..|.||||+|+..++.+++++|...+.+     ++.+|..|+|
T Consensus       100 d~~g~tpL~~A~~-~~~~e~~~~Ll~~g~d--~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~-----i~~~d~~g~T  171 (223)
T d1uoha_         100 NQNGCTPLHYAAS-KNRHEIAVMLLEGGAN--PDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-----TNIQDTEGNT  171 (223)
T ss_dssp             CTTCCCHHHHHHH-HTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----SCCCCTTCCC
T ss_pred             CCCCCchhhHHHH-cCCHHHHHHHHHCCCC--CCCcCCCCCccchhhhhcCCcchhhhhccccce-----eeeccCCCCc
Confidence            3444567999999 9999999999987554  678899999999999999999999999999988     6889999999


Q ss_pred             HHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHh
Q 043390           92 ILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAG  145 (150)
Q Consensus        92 ~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~  145 (150)
                      |||+|+..|+. +++++|++.|++ ++.+|.+|+||||+| +.|+.+++++|++
T Consensus       172 pL~~Aa~~g~~-~~v~~LL~~Gad-~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         172 PLHLACDEERV-EEAKLLVSQGAS-IYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHTTCC-SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             eeccccccCcH-HHHHHHHHCCCC-CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            99999999996 999999999865 999999999999998 5799999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=3.3e-25  Score=146.74  Aligned_cols=139  Identities=16%  Similarity=0.172  Sum_probs=105.1

Q ss_pred             CcccccchhhhhcCHHHHHHHHhhcCHHHHHHHHHhC------CCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCC
Q 043390            3 SIGIEETDAKNKINSELYNALMIKQDEQKVIELCRKV------PDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPD   76 (150)
Q Consensus         3 s~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ll~~~------~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~   76 (150)
                      +.+++..+.+. ..++||.|+. .|+.+.++.|+...      .+.+++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        22 ~~~~n~~~~~~-g~T~Lh~A~~-~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad   99 (277)
T d2fo1e1          22 RESVNIIDPRH-NRTVLHWIAS-NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD   99 (277)
T ss_dssp             TTTTTTCCCSS-CCCHHHHHHC-TTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             hcCCCcCCCCC-CccHHHHHHH-cCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccc
Confidence            44445444432 4567888888 88887665554321      1234677888888888888888888888888888776


Q ss_pred             Ccc-----------------------------------------------------------------------------
Q 043390           77 QSL-----------------------------------------------------------------------------   79 (150)
Q Consensus        77 ~~~-----------------------------------------------------------------------------   79 (150)
                      ++.                                                                             
T Consensus       100 ~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (277)
T d2fo1e1         100 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR  179 (277)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGG
T ss_pred             cccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccc
Confidence            310                                                                             


Q ss_pred             --------------------------------cccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCH
Q 043390           80 --------------------------------DKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTA  127 (150)
Q Consensus        80 --------------------------------~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tp  127 (150)
                                                      .+.+.+|..|.||||+|+..|+. +++++|++.|++ ++.+|.+|.||
T Consensus       180 ~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~-~iv~~Ll~~gad-in~~d~~G~T~  257 (277)
T d2fo1e1         180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRI-EVVMYLIQQGAS-VEAVDATDHTA  257 (277)
T ss_dssp             TSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCH-HHHHHHHHTTCC-SSCCCSSSCCH
T ss_pred             ccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCH-HHHHHHHHCcCC-CCCcCCCCCCH
Confidence                                            02245777899999999999996 999999999865 89999999999


Q ss_pred             HHHHHHcCCHHHHHHHHh
Q 043390          128 LLGAAHNGKIEIFNFLAG  145 (150)
Q Consensus       128 l~~a~~~g~~~~~~~L~~  145 (150)
                      ||+|++.|+.+++++|++
T Consensus       258 L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         258 RQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHH
Confidence            999999999999998875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-24  Score=132.91  Aligned_cols=123  Identities=20%  Similarity=0.266  Sum_probs=91.8

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcc------------------
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSL------------------   79 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~------------------   79 (150)
                      +|+.|+. .|+.+.++.++.... .+++..|..|+||||+|+. ++.+++++|+..+.+++.                  
T Consensus         5 ~L~~Aa~-~g~~~~vk~lL~~~~-~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           5 RLSGAAA-RGDVQEVRRLLHREL-VHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHTTC-CCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHH-cCCHHHHHHHHHhCC-CCCCccCCCCCcccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            4677777 777777777776532 2355667777777776653 566667777766655311                  


Q ss_pred             ----------cccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Q 043390           80 ----------DKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGK  146 (150)
Q Consensus        80 ----------~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~  146 (150)
                                .+++.+|..|.||||+|+..|+. +++++|+ .++ +++.+|.+|+||||+|++.|+.+++++|+++
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~-~i~~~L~-~~~-~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT-AVVSFLA-AES-DLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH-HHHHHHH-TTS-CTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccCCCCeeeccccccccc-ccccccc-ccc-cccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence                      13577888999999999999996 9999887 454 4889999999999999999999999999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.92  E-value=6.7e-24  Score=141.50  Aligned_cols=129  Identities=24%  Similarity=0.281  Sum_probs=112.7

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCccc----------------
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLD----------------   80 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~----------------   80 (150)
                      +.|+.|+. .|+.+.|+.|++.+.+  ++..|.+|+||||+|+..|+.+++++|++++.+....                
T Consensus        42 t~l~~A~~-~G~~~~v~~Ll~~Gad--vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          42 AVFLAACS-SGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             HHHHHHHH-HTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHHHHHHH-cCCHHHHHHHHHCCCC--CCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            56999999 9999999999998655  7788999999999999999999999999998763100                


Q ss_pred             ------------------------------------------------------------------------ccccCCCC
Q 043390           81 ------------------------------------------------------------------------KMTRQNKA   88 (150)
Q Consensus        81 ------------------------------------------------------------------------~~~~~~~~   88 (150)
                                                                                              .....+..
T Consensus       119 ~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (291)
T d1s70b_         119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             cchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCC
Confidence                                                                                    11345667


Q ss_pred             CChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           89 GNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        89 g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |.||||.|+..|+. +++++|++.|+. ++.++..|.||||+|+..|+.+++++|+++|+.+
T Consensus       199 g~t~L~~a~~~~~~-~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv  258 (291)
T d1s70b_         199 GGTALHVAAAKGYT-EVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM  258 (291)
T ss_dssp             CCCHHHHHHHHTCH-HHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCChhhHHHHcCCh-hhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            89999999999996 999999999965 9999999999999999999999999999999864

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=3.8e-25  Score=129.82  Aligned_cols=92  Identities=21%  Similarity=0.224  Sum_probs=86.7

Q ss_pred             CcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHH
Q 043390           52 DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGA  131 (150)
Q Consensus        52 ~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a  131 (150)
                      .|||++|++.|+.+++++|++.|++     ++.++..|+||||+|+..|+. +++++|++.|++ ++.+|..|+||||+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-----~n~~~~~g~t~lh~A~~~~~~-~~~~~ll~~g~d-in~~d~~g~tpLh~A   75 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-----VNRTLEGGRKPLHYAADCGQL-EILEFLLLKGAD-INAPDKHHITPLLSA   75 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-----CCCCSSSSCCTTHHHHHHSTT-THHHHHHHSSCT-TTCCSSSCSCHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-----ccccccccccccccccccccc-ccccccccccce-eeecccccccchhhh
Confidence            4799999999999999999999998     688999999999999999997 999999999965 999999999999999


Q ss_pred             HHcCCHHHHHHHHhccCCC
Q 043390          132 AHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       132 ~~~g~~~~~~~L~~~~~~l  150 (150)
                      +..|+.+++++|+++|+.+
T Consensus        76 ~~~~~~~~v~~Ll~~Gad~   94 (118)
T d1myoa_          76 VYEGHVSCVKLLLSKGADK   94 (118)
T ss_dssp             HTTTCCHHHHHHHTTCCCS
T ss_pred             hhcCchhhhhhhhcccccc
Confidence            9999999999999999863

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-24  Score=129.25  Aligned_cols=91  Identities=22%  Similarity=0.323  Sum_probs=85.7

Q ss_pred             cHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHH
Q 043390           53 TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAA  132 (150)
Q Consensus        53 ~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~  132 (150)
                      ++|+.|+..|+.+++++|++.|++     ++.+|..|+||||+|+..|+. +++++|++.+.. ++.+|.+|+||||+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-----~n~~d~~g~t~Lh~A~~~~~~-~~~~~ll~~g~~-~~~~d~~g~tpLh~A~   75 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-----PSLPNDEGITALHNAVCAGHT-EIVKFLVQFGVN-VNAADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-----CCCCCTTSCCHHHHHHHHTCH-HHHHHHHHHTCC-TTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-----ccccccccccccccccccccc-cccccccccccc-cccccccCcccccccc
Confidence            579999999999999999999998     688999999999999999996 999999999965 9999999999999999


Q ss_pred             HcCCHHHHHHHHhccCCC
Q 043390          133 HNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       133 ~~g~~~~~~~L~~~~~~l  150 (150)
                      ..|+.+++++|+++|+++
T Consensus        76 ~~g~~~~v~~Ll~~ga~v   93 (130)
T d1ycsb1          76 SCNNVQVCKFLVESGAAV   93 (130)
T ss_dssp             HTTCHHHHHHHHHTTCCT
T ss_pred             hhhHHHHHHHHHHcCCCc
Confidence            999999999999999763

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.8e-23  Score=127.20  Aligned_cols=87  Identities=20%  Similarity=0.243  Sum_probs=56.6

Q ss_pred             cHHHHHHhhCChHHHHHHHhhC-CCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHH
Q 043390           53 TVLHVAAYTKKSDLVMKLLDEL-PDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGA  131 (150)
Q Consensus        53 ~~L~~a~~~~~~~~v~~ll~~~-~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a  131 (150)
                      ..|+.|+..|+.++|+.|+..+ .+     ++.+|..|+||||+|+. |+. +++++|++.+.. ++..+..|.+|++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~-----~n~~d~~g~t~L~~A~~-~~~-~~v~~Ll~~~~~-~~~~~~~~~~~l~~~   75 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVH-----PDALNRFGKTALQVMMF-GST-AIALELLKQGAS-PNVQDTSGTSPVHDA   75 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCC-----TTCCCTTSCCHHHHSCT-TCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCC-----CCccCCCCCcccccccc-ccc-cccccccccccc-ccccccccccccccc
Confidence            4599999999999999999864 45     57788888888888764 664 777777766532 344444444444444


Q ss_pred             HHcCCHHHHHHHHhcc
Q 043390          132 AHNGKIEIFNFLAGKN  147 (150)
Q Consensus       132 ~~~g~~~~~~~L~~~~  147 (150)
                      +..++.+++++++++|
T Consensus        76 ~~~~~~~~~~~~l~~~   91 (156)
T d1bd8a_          76 ARTGFLDTLKVLVEHG   91 (156)
T ss_dssp             HHTTCHHHHHHHHHTT
T ss_pred             cccccccccccccccc
Confidence            4444444444444433

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.2e-23  Score=143.05  Aligned_cols=119  Identities=23%  Similarity=0.180  Sum_probs=105.4

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHH
Q 043390           15 INSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILH   94 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~   94 (150)
                      ..++++.++. .++.+.++.|++.+.+  ++..+..+.||||.++..++.+++++++..|++     ++.+|..|.||||
T Consensus       264 g~~~l~~a~~-~~~~~i~~~Ll~~g~~--~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~-----in~~d~~G~T~Lh  335 (408)
T d1n11a_         264 GLTPLHLVAQ-EGHVPVADVLIKHGVM--VDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-----VNAKTKLGYSPLH  335 (408)
T ss_dssp             CCCHHHHHHH-HTCHHHHHHHHHHTCC--TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC-----TTCCCTTSCCHHH
T ss_pred             CCChhhhhhh-cCcHHHHHHHHHCCCc--cccccccccccchhhcccCcceeeeeecccccc-----ccccCCCCCCHHH
Confidence            3456888888 8899888888887555  667777888999999999999999999999888     7889999999999


Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHH
Q 043390           95 ETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL  143 (150)
Q Consensus        95 ~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L  143 (150)
                      +|+..|+. +++++|++.|++ ++.+|.+|.||||+|+++|+.+++++|
T Consensus       336 ~A~~~g~~-~iv~~Ll~~GAd-~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         336 QAAQQGHT-DIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             HHHHTTCH-HHHHHHHHTTCC-SCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCH-HHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999996 999999999965 999999999999999999999999866

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.4e-22  Score=132.56  Aligned_cols=127  Identities=18%  Similarity=0.166  Sum_probs=110.2

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCC----hHHHHHHHhhCCCCcccccccCCCCCCh
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKK----SDLVMKLLDELPDQSLDKMTRQNKAGNT   91 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~----~~~v~~ll~~~~~~~~~~~~~~~~~g~t   91 (150)
                      .++|+.|+. .|+.+.++.|+... +.+++..+..|.++++.+...+.    .+++++|+++|++     ++.++..|.|
T Consensus       149 ~t~L~~A~~-~~~~~~~~~Ll~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-----~n~~~~~g~t  221 (285)
T d1wdya_         149 ATALMDAAE-KGHVEVLKILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-----VNVRGERGKT  221 (285)
T ss_dssp             CCHHHHHHH-HTCHHHHHHHHHTS-CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-----SSCCCTTSCC
T ss_pred             chHHHHHHH-cCCHHHHHHHHhcc-CCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC-----CCccCCCCCC
Confidence            446999999 99999999998863 34577888899888777655433    4689999999998     6889999999


Q ss_pred             HHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390           92 ILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus        92 ~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      |||+|+..|+. +++++|++..+.+++.+|.+|.||||+|++.|+.+++++|+++|++.
T Consensus       222 ~L~~a~~~~~~-~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~  279 (285)
T d1wdya_         222 PLILAVEKKHL-GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             HHHHHHHTTCH-HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             ccchhhhcCcH-HHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            99999999996 99999998765669999999999999999999999999999999973

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=7.5e-23  Score=132.08  Aligned_cols=126  Identities=20%  Similarity=0.090  Sum_probs=108.0

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChH
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTI   92 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~   92 (150)
                      ......++.++. .++.+.+..++..+..  ....+..|+||||+|+..++.+++++|+..+..    +++.+|.+|+||
T Consensus       103 ~~~~~~l~~~~~-~~~~~~~~~l~~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~----~in~~d~~g~Tp  175 (229)
T d1ixva_         103 NQGVTCLHLAVG-KKWFEVSQFLIENGAS--VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS----AVNWQDKQGWTP  175 (229)
T ss_dssp             TTSCCHHHHHHH-TTCHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCC----CSCCCCTTSCCH
T ss_pred             cccccccccccc-cchhhhhhhhhhhccc--ccccCCCCCCccchhhhcccccccccccccccc----cccccccccCCc
Confidence            334456888888 8999988888887544  567899999999999999999999999998865    378899999999


Q ss_pred             HHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           93 LHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        93 l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      ||+|+..|+. +++++|++..+.+++.+|..|+|||++|+   +.+++++|+++|+.
T Consensus       176 Lh~A~~~~~~-~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         176 LFHALAEGHG-DAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             hhhhcccccH-HHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            9999999996 99999997633459999999999999987   45899999999984

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4e-22  Score=138.08  Aligned_cols=87  Identities=22%  Similarity=0.208  Sum_probs=75.1

Q ss_pred             HHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHH
Q 043390           17 SELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHET   96 (150)
Q Consensus        17 ~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a   96 (150)
                      ++||.||. .|+.+.|+.|++.+.+  ++..|..|+||||+|+..|+.+++++|+++|++     ++.++..|.||||+|
T Consensus         2 TpL~~Aa~-~g~~~~v~~Ll~~g~~--in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-----i~~~~~~g~t~L~~A   73 (408)
T d1n11a_           2 TPLHVASF-MGHLPIVKNLLQRGAS--PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-----VNAKAKDDQTPLHCA   73 (408)
T ss_dssp             CHHHHHHH-HTCHHHHHHHHHTTCC--SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-----SSCCCTTSCCHHHHH
T ss_pred             ChHHHHHH-CcCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-----CCCCCCCCCCHHHHH
Confidence            36999999 9999999999998654  778899999999999999999999999999998     688889999999999


Q ss_pred             HHcCCcHHHHHHHHhh
Q 043390           97 ASSSHALPVADKLFRK  112 (150)
Q Consensus        97 ~~~g~~~~~~~~Ll~~  112 (150)
                      +..|+. +++++|+..
T Consensus        74 ~~~g~~-~~~~~Ll~~   88 (408)
T d1n11a_          74 ARIGHT-NMVKLLLEN   88 (408)
T ss_dssp             HHHTCH-HHHHHHHHH
T ss_pred             HHcCCH-HHHHHHHHh
Confidence            888875 776666543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=2.1e-24  Score=147.71  Aligned_cols=125  Identities=16%  Similarity=0.126  Sum_probs=100.2

Q ss_pred             cCHHHHHHHHhhcCHHHHHH---HHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccC--CCCC
Q 043390           15 INSELYNALMIKQDEQKVIE---LCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQ--NKAG   89 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~---ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~--~~~g   89 (150)
                      ..+.|+.|+. .|+.+.++.   |+..  +.+++..|..|+||||+|+..|+.++|++|++.|++     ++..  +..|
T Consensus        90 ~~t~L~~Aa~-~g~~~~~~~~~~L~~~--~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~-----~~~~~~~~~g  161 (346)
T d2ajaa1          90 SEVICFVAAI-TGCSSALDTLCLLLTS--DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT-----EIMAMIQAEN  161 (346)
T ss_dssp             HHHHHHHHHH-HCCHHHHHHHTTC--C--CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT-----THHHHHSHHH
T ss_pred             CCcHHHHHHH-hCCHHHHHHHHHHHhC--CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-----ccccccccCC
Confidence            3456899999 999886654   3343  344778899999999999999999999999999998     3444  4569


Q ss_pred             ChHHHHHHHcCCcHHHHHHHHhhCCcc--cccccCCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390           90 NTILHETASSSHALPVADKLFRKAPGL--LGMRNNNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus        90 ~t~l~~a~~~g~~~~~~~~Ll~~~~~~--~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                      +||||+|+..|+. +++++|++.++..  .+..+.++.||++.|+++|+.+++++|++.|+
T Consensus       162 ~t~L~~Aa~~g~~-~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga  221 (346)
T d2ajaa1         162 YHAFRLAAENGHL-HVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  221 (346)
T ss_dssp             HHHHHHHHHTTCH-HHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             CChhHHHHHHhhH-HHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCC
Confidence            9999999999997 9999999998642  23445567788888999999999999999875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.1e-22  Score=126.61  Aligned_cols=132  Identities=15%  Similarity=0.056  Sum_probs=81.1

Q ss_pred             hhhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcc-cc--------
Q 043390           11 AKNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSL-DK--------   81 (150)
Q Consensus        11 ~~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~-~~--------   81 (150)
                      .+....++||.|+. .|+.+.++.++..+.+  ++..|..|.+|||+++..++.++++.++..+..... ..        
T Consensus        35 ~d~~g~TpLh~A~~-~~~~~iv~~L~~~g~d--~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  111 (221)
T d1iknd_          35 QNNLQQTPLHLAVI-TNQPEIAEALLGAGCD--PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG  111 (221)
T ss_dssp             CCTTCCCHHHHHHH-TTCHHHHHCCCSCCCC--SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred             CCCCCCcccccccc-cccccccccccccccc--ccccccccccccccccccccccccchhhhhccccccccccccccccc
Confidence            34455667888888 8888877777766444  566777788888888888877777777776544211 01        


Q ss_pred             -------------------------ccc-CCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcC
Q 043390           82 -------------------------MTR-QNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNG  135 (150)
Q Consensus        82 -------------------------~~~-~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g  135 (150)
                                               ++. .+..|+||||+|+..|+. +++++|++.|++ ++.+|..|+||||+|+..+
T Consensus       112 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~-~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~  189 (221)
T d1iknd_         112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP-DLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRP  189 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH-HHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSS
T ss_pred             chhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccH-HHHHHHHhcCCc-ccccCCCCCCHHHHHHHCC
Confidence                                     122 223455666666666664 666666655543 5556666666666666666


Q ss_pred             CHHHHHHHHhcc
Q 043390          136 KIEIFNFLAGKN  147 (150)
Q Consensus       136 ~~~~~~~L~~~~  147 (150)
                      +.+++++|++.+
T Consensus       190 ~~~~~~~l~~~~  201 (221)
T d1iknd_         190 STRIQQQLGQLT  201 (221)
T ss_dssp             CHHHHHHHHTTS
T ss_pred             CHHHHHHHHHcC
Confidence            666666555543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=3e-21  Score=122.87  Aligned_cols=109  Identities=17%  Similarity=0.086  Sum_probs=95.4

Q ss_pred             hcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHH
Q 043390           26 KQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPV  105 (150)
Q Consensus        26 ~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~  105 (150)
                      .........+.....  +++.++..|+|||++++..+..++++.++..+.+     ++.+|..|.||||+|+..|+. ++
T Consensus       100 ~~~~~~~~~L~~~~~--~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-----~~~~d~~g~TpL~~A~~~g~~-~~  171 (209)
T d1ot8a_         100 LAIEGMVEDLITADA--DINAADNSGKTALHWAAAVNNTEAVNILLMHHAN-----RDAQDDKDETPLFLAAREGSY-EA  171 (209)
T ss_dssp             TTCTTHHHHHHHTTC--CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTCH-HH
T ss_pred             ccchhhhhhhhhhcc--cccccCCCCCCcchhhcccCcceeeeeecccccc-----ccccccccccccchhccccHH-HH
Confidence            444445555555533  3667899999999999999999999999999988     688999999999999999996 99


Q ss_pred             HHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHH
Q 043390          106 ADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFL  143 (150)
Q Consensus       106 ~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L  143 (150)
                      +++|++.|++ ++.+|..|+||||+|+++|+.+++++|
T Consensus       172 v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         172 SKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999965 999999999999999999999999986

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.1e-21  Score=121.98  Aligned_cols=132  Identities=17%  Similarity=0.169  Sum_probs=105.4

Q ss_pred             cCHHHHHHHHhhcCHHHHHHHHHhC--CCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCccc------------
Q 043390           15 INSELYNALMIKQDEQKVIELCRKV--PDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLD------------   80 (150)
Q Consensus        15 ~~~~l~~a~~~~~~~~~~~~ll~~~--~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~------------   80 (150)
                      ..++||.|+. .|+.+.++.|+...  .+.+++.+|..|+||||+|+..|+.+++++|+++|+..+..            
T Consensus         3 G~TpLh~A~~-~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           3 GDTPLHIAVV-QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TCCHHHHHHH-TTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            4567999999 99999998887631  23447788999999999999999999999999998763110            


Q ss_pred             ------------------------------------------------------ccccCCCCCChHHHHHHHcCCcHHHH
Q 043390           81 ------------------------------------------------------KMTRQNKAGNTILHETASSSHALPVA  106 (150)
Q Consensus        81 ------------------------------------------------------~~~~~~~~g~t~l~~a~~~g~~~~~~  106 (150)
                                                                            ........+.+|++.|+..+.. .++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~  160 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL-SMV  160 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH-HHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh-hhh
Confidence                                                                  1123444577888888888885 888


Q ss_pred             HHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390          107 DKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       107 ~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      +++++.+.. .+.++..|.||||+|+..|+.+++++|+++|+.
T Consensus       161 ~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad  202 (228)
T d1k1aa_         161 QLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD  202 (228)
T ss_dssp             HHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             hhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHHHCCCC
Confidence            888888754 778888888999999999999999999888875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=7e-22  Score=125.85  Aligned_cols=133  Identities=17%  Similarity=0.121  Sum_probs=100.5

Q ss_pred             hhhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCC--------------
Q 043390           12 KNKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQ--------------   77 (150)
Q Consensus        12 ~~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~--------------   77 (150)
                      +....++||.|+. .|+.+.++.|+..+..  ++..+..+.++++.++..++..............              
T Consensus        20 d~~G~t~L~~A~~-~g~~e~v~~Ll~~g~~--~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (209)
T d1ot8a_          20 DKTGETSLHLAAR-FARADAAKRLLDAGAD--ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLIL   96 (209)
T ss_dssp             HHHCCCHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHH
T ss_pred             CCCCCCHHHHHHH-cCCHHHHHHHHhhccc--cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4556667888888 8888888777776544  5566667777777777666654433333222110              


Q ss_pred             ---------------cccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHH
Q 043390           78 ---------------SLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNF  142 (150)
Q Consensus        78 ---------------~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~  142 (150)
                                     ...+++.++..|.||+++++..+.. ++++.+++.+.. ++.+|..|.||||+|+..|+.+++++
T Consensus        97 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~-~~~~~l~~~~~~-~~~~d~~g~TpL~~A~~~g~~~~v~~  174 (209)
T d1ot8a_          97 AARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNT-EAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKA  174 (209)
T ss_dssp             HHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH-HHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             cccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcc-eeeeeecccccc-ccccccccccccchhccccHHHHHHH
Confidence                           0013567889999999999999996 999999999865 89999999999999999999999999


Q ss_pred             HHhccCC
Q 043390          143 LAGKNFR  149 (150)
Q Consensus       143 L~~~~~~  149 (150)
                      |+++|+.
T Consensus       175 Ll~~gad  181 (209)
T d1ot8a_         175 LLDNFAN  181 (209)
T ss_dssp             HHHTTCC
T ss_pred             HHHCCCC
Confidence            9999985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.5e-21  Score=125.55  Aligned_cols=92  Identities=21%  Similarity=0.065  Sum_probs=79.4

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHH
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHE   95 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~   95 (150)
                      .++++.++. .++.+.+..++..+... ....+..|+||||+|+..|+.+++++|+++|++     ++.+|..|.||||+
T Consensus       112 ~t~l~~a~~-~~~~~~~~~l~~~~~~~-~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad-----~~~~~~~G~tpl~~  184 (221)
T d1iknd_         112 HTCLHLASI-HGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-----VNRVTYQGYSPYQL  184 (221)
T ss_dssp             CCHHHHHHH-TTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-----SCCCCTTCCCGGGG
T ss_pred             chhhhHHhh-cCChhheeeecccCccc-ccccccCCCCccccccccccHHHHHHHHhcCCc-----ccccCCCCCCHHHH
Confidence            457888998 99999888888875553 224467899999999999999999999999998     68899999999999


Q ss_pred             HHHcCCcHHHHHHHHhhCCc
Q 043390           96 TASSSHALPVADKLFRKAPG  115 (150)
Q Consensus        96 a~~~g~~~~~~~~Ll~~~~~  115 (150)
                      |+..++. +++++|++....
T Consensus       185 A~~~~~~-~~~~~l~~~~~~  203 (221)
T d1iknd_         185 TWGRPST-RIQQQLGQLTLE  203 (221)
T ss_dssp             CTTSSCH-HHHHHHHTTSCG
T ss_pred             HHHCCCH-HHHHHHHHcCCc
Confidence            9999996 999999988643

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=4.4e-21  Score=128.76  Aligned_cols=127  Identities=20%  Similarity=0.139  Sum_probs=90.0

Q ss_pred             hhcCHHHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCCh-------HHHHHHHhhCCCCcccccccC
Q 043390           13 NKINSELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKS-------DLVMKLLDELPDQSLDKMTRQ   85 (150)
Q Consensus        13 ~~~~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~-------~~v~~ll~~~~~~~~~~~~~~   85 (150)
                      ....++||.|+. .|+.+.++.|++.+.+  ++.+|..|+||||.||..++.       ++++++...        +..+
T Consensus       105 ~~G~T~LH~Aa~-~g~~~~v~~Ll~~gad--~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~--------~~~~  173 (301)
T d1sw6a_         105 EHGNTPLHWLTS-IANLELVKHLVKHGSN--RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC--------LILE  173 (301)
T ss_dssp             TTCCCHHHHHHH-TTCHHHHHHHHHTTCC--TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG--------GGEE
T ss_pred             CCCCCHHHHHHH-cCCHHHHHHHHHCCCC--CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh--------hhhc
Confidence            445567888888 8888888888887554  677888888999888876542       333433322        4567


Q ss_pred             CCCCChHHHHHHHcCCc---HHH--------HHHHHhhCC------------------------------------cccc
Q 043390           86 NKAGNTILHETASSSHA---LPV--------ADKLFRKAP------------------------------------GLLG  118 (150)
Q Consensus        86 ~~~g~t~l~~a~~~g~~---~~~--------~~~Ll~~~~------------------------------------~~~~  118 (150)
                      |..|+||||+++..+..   ...        +.++...+.                                    ..++
T Consensus       174 d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in  253 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN  253 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTT
T ss_pred             ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCcc
Confidence            88888888877764331   022        223333321                                    1157


Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Q 043390          119 MRNNNGGTALLGAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       119 ~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      .+|.+|+||||+|++.|+.+++++|+++|++.
T Consensus       254 ~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~  285 (301)
T d1sw6a_         254 AQDSNGDTCLNIAARLGNISIVDALLDYGADP  285 (301)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            88999999999999999999999999999863

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.4e-21  Score=115.49  Aligned_cols=92  Identities=20%  Similarity=0.161  Sum_probs=83.0

Q ss_pred             CCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCC-CHHH
Q 043390           51 DDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGG-TALL  129 (150)
Q Consensus        51 g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~-tpl~  129 (150)
                      +.++||+|+..|+.+++++|+++|++     ++.++..|.||+|+|+ .|+. +++++|++.|+. ++.++..+. ||||
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad-----~n~~~~~g~t~l~~a~-~g~~-~~v~~Ll~~ga~-~~~~~~~~~~~~L~   74 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN-----PNAPNSYGRRPIQVMM-MGSA-RVAELLLLHGAE-PNCADPATLTRPVH   74 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC-----TTCCCSSSCCTTTSSC-TTCH-HHHHHHHTTTCC-CCCCCTTTCCCHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc-----cccccccccccccccc-cccc-cccccccccccc-cccccccccccccc
Confidence            46899999999999999999999998     5889999999999775 6886 999999999965 888888776 6999


Q ss_pred             HHHHcCCHHHHHHHHhccCCC
Q 043390          130 GAAHNGKIEIFNFLAGKNFRL  150 (150)
Q Consensus       130 ~a~~~g~~~~~~~L~~~~~~l  150 (150)
                      +|++.|+.+++++|+++|+++
T Consensus        75 ~A~~~g~~~~v~~Ll~~ga~~   95 (125)
T d1bi7b_          75 DAAREGFLDTLVVLHRAGARL   95 (125)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCS
T ss_pred             ccccccccccccccccccccc
Confidence            999999999999999999864

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.83  E-value=5.1e-22  Score=131.19  Aligned_cols=96  Identities=18%  Similarity=0.187  Sum_probs=83.9

Q ss_pred             ccccc-cCCCcHHHHHHhhCChHHHHHH--------HhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCC
Q 043390           44 LCVFT-IYDDTVLHVAAYTKKSDLVMKL--------LDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAP  114 (150)
Q Consensus        44 ~~~~~-~~g~~~L~~a~~~~~~~~v~~l--------l~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~  114 (150)
                      ++..+ ..|+||||+|+..|+.++++.|        +..|++     ++.+|.+|+||||+|+..|+. +++++|++.|+
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad-----vn~~d~~G~TpLh~A~~~g~~-~iv~~Ll~~Ga   98 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-----VNAMDCDENTPLMLAVLARRR-RLVAYLMKAGA   98 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-----TTCCCTTSCCHHHHHHHHTCH-HHHHHHHHTTC
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC-----ccccCCCCCeeeccccccccc-ccccccccccc
Confidence            33444 4699999999999998877665        556777     688999999999999999996 99999999996


Q ss_pred             cccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Q 043390          115 GLLGMRNNNGGTALLGAAHNGKIEIFNFLAGK  146 (150)
Q Consensus       115 ~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~  146 (150)
                      + ++.++..|.||+++|+..++.++++++...
T Consensus        99 d-~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~  129 (277)
T d2fo1e1          99 D-PTIYNKSERSALHQAAANRDFGMMVYMLNS  129 (277)
T ss_dssp             C-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTS
T ss_pred             c-cccccccccccccchhhhcchhhhhhhhhc
Confidence            5 999999999999999999999999888654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.81  E-value=1.9e-21  Score=132.89  Aligned_cols=96  Identities=23%  Similarity=0.141  Sum_probs=81.5

Q ss_pred             ccccCCCcHHHHHHhhCChHHHHH---HHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCccccccc-
Q 043390           46 VFTIYDDTVLHVAAYTKKSDLVMK---LLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRN-  121 (150)
Q Consensus        46 ~~~~~g~~~L~~a~~~~~~~~v~~---ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~-  121 (150)
                      .++..|.||||+|+..|+.+++++   |+..|++     ++.+|..|+||||+|+..|+. +++++|++.|+. ++..+ 
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-----in~~~~~g~taL~~Aa~~G~~-~~v~~Ll~~g~~-~~~~~~  157 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-----VKVIQAENYQAFRLAAENGHL-HVLNRLCELAPT-EIMAMI  157 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-----CC--CHHHHHHHHHHHHTTCH-HHHHHHHHSCTT-THHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-----ccccCCCCCCHHHHHHHCCCH-HHHHHHHHcCCC-cccccc
Confidence            457789999999999999877665   6788887     688999999999999999997 999999999965 76665 


Q ss_pred             -CCCCCHHHHHHHcCCHHHHHHHHhccC
Q 043390          122 -NNGGTALLGAAHNGKIEIFNFLAGKNF  148 (150)
Q Consensus       122 -~~g~tpl~~a~~~g~~~~~~~L~~~~~  148 (150)
                       .+|+||||+|+..|+.+++++|++.|+
T Consensus       158 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~  185 (346)
T d2ajaa1         158 QAENYHAFRLAAENGHLHVLNRLCELAP  185 (346)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHSCG
T ss_pred             ccCCCChhHHHHHHhhHHHHHHHHHcCC
Confidence             458999999999999999999999875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=4.3e-19  Score=108.12  Aligned_cols=93  Identities=20%  Similarity=0.147  Sum_probs=82.0

Q ss_pred             hcCHHHHHHHHhh---cCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCC
Q 043390           14 KINSELYNALMIK---QDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGN   90 (150)
Q Consensus        14 ~~~~~l~~a~~~~---~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~   90 (150)
                      ...++||.|+. .   +..+.++.|++.+.+  ++.+|..|+||||+|+..|+.+++++|+++|++     ++.+|..|.
T Consensus        44 ~g~t~Lh~A~~-~~~~~~~~iv~~Ll~~gad--in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad-----~~~~d~~g~  115 (154)
T d1dcqa1          44 PDETALHLAVR-SVDRTSLHIVDFLVQNSGN--LDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS-----IEIANESGE  115 (154)
T ss_dssp             TTCBHHHHHHH-HCCTTTHHHHHHHHHHCSC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSC
T ss_pred             CCCchHHHHHH-hcCCCCHHHHHHHHHcCCC--hhhhhhhhccccccccccccccccccccccCcc-----ccccCCCCC
Confidence            34567999997 5   567788889988655  788999999999999999999999999999998     688999999


Q ss_pred             hHHHHHHHcCCcHHHHHHHHhhCCc
Q 043390           91 TILHETASSSHALPVADKLFRKAPG  115 (150)
Q Consensus        91 t~l~~a~~~g~~~~~~~~Ll~~~~~  115 (150)
                      ||||+|+..|+. +++++|++.+..
T Consensus       116 tpL~~A~~~~~~-~i~~~L~~~~~~  139 (154)
T d1dcqa1         116 TPLDIAKRLKHE-HCEELLTQALSG  139 (154)
T ss_dssp             CHHHHHHHTTCH-HHHHHHHHHHTT
T ss_pred             CHHHHHHHcCCH-HHHHHHHHhCCC
Confidence            999999999996 999999998754

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.7e-18  Score=113.51  Aligned_cols=130  Identities=24%  Similarity=0.246  Sum_probs=101.0

Q ss_pred             CHHHHHHHHhhcCHHHHHHHHHhCCCCCcccc-ccCCCcHHHHHHhhCChHHHHHHHhhCCCCccc--------------
Q 043390           16 NSELYNALMIKQDEQKVIELCRKVPDHSLCVF-TIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLD--------------   80 (150)
Q Consensus        16 ~~~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~-~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~--------------   80 (150)
                      ++.|+.|++ .|+.+.++.|++.+.+  ++.+ +..|+||||+|+..|+.+++++|+..+......              
T Consensus         6 ~~~L~~Ai~-~~~~e~vk~Ll~~G~d--in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           6 NHLLIKAVQ-NEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHTTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cHHHHHHHH-cCCHHHHHHHHHCCCC--cCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            346999999 9999999999998766  5544 457999999999999999999999987753100              


Q ss_pred             ---------------------------------------------------------ccccCCCCCChHHHHHHHcCCcH
Q 043390           81 ---------------------------------------------------------KMTRQNKAGNTILHETASSSHAL  103 (150)
Q Consensus        81 ---------------------------------------------------------~~~~~~~~g~t~l~~a~~~g~~~  103 (150)
                                                                               .....+..|.||||+|+..|+. 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-  161 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV-  161 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH-
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCH-
Confidence                                                                     0123334588999999999885 


Q ss_pred             HHHHHHHhhC-------------------------------------CcccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Q 043390          104 PVADKLFRKA-------------------------------------PGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGK  146 (150)
Q Consensus       104 ~~~~~Ll~~~-------------------------------------~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~  146 (150)
                      +++++|++..                                     +.+++.++..|.||||+|++.|+.+++++|+++
T Consensus       162 ~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            8887777542                                     123566788899999999999999999999974


Q ss_pred             -cCC
Q 043390          147 -NFR  149 (150)
Q Consensus       147 -~~~  149 (150)
                       |+.
T Consensus       242 ~g~d  245 (285)
T d1wdya_         242 EHIE  245 (285)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence             654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=5.1e-19  Score=107.40  Aligned_cols=91  Identities=22%  Similarity=0.170  Sum_probs=78.1

Q ss_pred             CcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhC------------------
Q 043390           52 DTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKA------------------  113 (150)
Q Consensus        52 ~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~------------------  113 (150)
                      .||||.|++.|+.+++++|+++|++     ++ .|..|+||||+|+..++. ++++.+....                  
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~-----~~-~~~~g~t~L~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP-----FT-TDWLGTSPLHLAAQYGHF-STTEVLLRAGVSRDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC-----CC-CCTTCCCHHHHHHHHTCH-HHHHHHHTTTCCTTCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC-----cc-cccCCCcccccccccccc-cccccccccccccccccccccccccccc
Confidence            4899999999999999999999987     34 689999999999998875 6665555442                  


Q ss_pred             --------------CcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390          114 --------------PGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       114 --------------~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                                    ..+.+.++..|.||||+|+..|+.+++++|++.|+.
T Consensus        76 ~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad  125 (153)
T d1awcb_          76 SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD  125 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccC
Confidence                          134778899999999999999999999999999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.77  E-value=6e-18  Score=112.35  Aligned_cols=117  Identities=20%  Similarity=0.281  Sum_probs=97.1

Q ss_pred             hcCHHHHHHHHHhCCCCCccc-------cccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHH
Q 043390           26 KQDEQKVIELCRKVPDHSLCV-------FTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETAS   98 (150)
Q Consensus        26 ~~~~~~~~~ll~~~~~~~~~~-------~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~   98 (150)
                      ....+.++.+...........       .+..+.|+|+.||..|+.++|++|++.|++     ++.+|.+|.||||+|+.
T Consensus         8 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gad-----vn~~d~~G~T~L~~A~~   82 (291)
T d1s70b_           8 QKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-----INYANVDGLTALHQACI   82 (291)
T ss_dssp             HHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-----TTCBCTTCCBHHHHHHH
T ss_pred             HhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC-----CCccCCCCCcHHHHHHh
Confidence            344566666666533322111       133456899999999999999999999998     68899999999999999


Q ss_pred             cCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q 043390           99 SSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFNFLAGKNFR  149 (150)
Q Consensus        99 ~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~~L~~~~~~  149 (150)
                      .|+. +++++|++.+.. ....+..+.+||+.++..++.++++.|+++|+.
T Consensus        83 ~g~~-eiv~~Ll~~~~~-~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~  131 (291)
T d1s70b_          83 DDNV-DMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAH  131 (291)
T ss_dssp             TTCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             cCCc-eeeeeecccccc-cccccccccccccccccccccchhhcccccCcc
Confidence            9996 999999999965 788888999999999999999999999998864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.7e-18  Score=105.41  Aligned_cols=89  Identities=19%  Similarity=0.228  Sum_probs=76.1

Q ss_pred             cHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHH
Q 043390           53 TVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAA  132 (150)
Q Consensus        53 ~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~  132 (150)
                      ++||+|+..|+.+++++|+++|++     ++.+|..|.||||+|+ .|+. +++++|++.+++ ++.++..+.+|++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d-----~n~~d~~g~TpL~~A~-~~~~-ei~~~Ll~~~a~-~~~~~~~~~~~l~~~~   74 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN-----VNAQNGFGRTALQVMK-LGNP-EIARRLLLRGAN-PDLKDRTGFAVIHDAA   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC-----TTCCCTTSCCHHHHCC-SSCH-HHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-----cCccCCcccccccccc-cccc-cccccccccccc-cccccccCcccccccc
Confidence            799999999999999999999998     6889999999999885 6886 999999999854 7777777777777777


Q ss_pred             HcCCHHHHHHHHhccCC
Q 043390          133 HNGKIEIFNFLAGKNFR  149 (150)
Q Consensus       133 ~~g~~~~~~~L~~~~~~  149 (150)
                      ..++.+++++|++.+..
T Consensus        75 ~~~~~~~~~~l~~~~~~   91 (156)
T d1ihba_          75 RAGFLDTLQTLLEFQAD   91 (156)
T ss_dssp             HHTCHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccc
Confidence            77777777777766653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.6e-18  Score=110.18  Aligned_cols=115  Identities=21%  Similarity=0.209  Sum_probs=96.9

Q ss_pred             HHHHHHHhhcCHHHHHHHHHhCCCCCccccccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHH
Q 043390           18 ELYNALMIKQDEQKVIELCRKVPDHSLCVFTIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETA   97 (150)
Q Consensus        18 ~l~~a~~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~   97 (150)
                      .++.+.. .........+....... .......+.++|+.|+..+...+++.++..+..     .+.+|..|.||||+|+
T Consensus       113 ~l~~~~~-~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~-----~~~~d~~g~t~L~~A~  185 (228)
T d1k1aa_         113 ALHVAVN-TECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-----VNAQMYSGSSALHSAS  185 (228)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCBCTTSCBHHHHHH
T ss_pred             ccccccc-cccchhhhhhhcccccc-ccccccchhhHHHHHHHhhhhhhhhhhhhhccc-----cccccccCcchHHHHH
Confidence            4666666 66666666665554332 335577889999999999999999999999987     6789999999999999


Q ss_pred             HcCCcHHHHHHHHhhCCcccccccCCCCCHHHHHHHcCCHHHHH
Q 043390           98 SSSHALPVADKLFRKAPGLLGMRNNNGGTALLGAAHNGKIEIFN  141 (150)
Q Consensus        98 ~~g~~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~a~~~g~~~~~~  141 (150)
                      ..|+. +++++|++.|++ ++.+|.+|+||||+|+++|+.+++|
T Consensus       186 ~~g~~-~~v~~Ll~~Gad-~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         186 GRGLL-PLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHTCH-HHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HcCCH-HHHHHHHHCCCC-CCCCCCCCCCHHHHHHhCCCccccC
Confidence            99996 999999999965 9999999999999999999998875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=2.8e-16  Score=105.09  Aligned_cols=89  Identities=16%  Similarity=0.091  Sum_probs=68.7

Q ss_pred             Ccccc-ccCCCcHHHHHHhhCChHHHHHHHhhCCCCcccccccCCCCCChHHHHHHHcCCcH--HHHHHHHhhCCccccc
Q 043390           43 SLCVF-TIYDDTVLHVAAYTKKSDLVMKLLDELPDQSLDKMTRQNKAGNTILHETASSSHAL--PVADKLFRKAPGLLGM  119 (150)
Q Consensus        43 ~~~~~-~~~g~~~L~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~g~t~l~~a~~~g~~~--~~~~~Ll~~~~~~~~~  119 (150)
                      +++.. |.+|+||||+|+..|+.++|++|++.|++     ++.+|..|+||||.|+..++..  ..+..+++.....+..
T Consensus        98 dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad-----~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~  172 (301)
T d1sw6a_          98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-----RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL  172 (301)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhh
Confidence            34544 89999999999999999999999999998     6889999999999999866410  1222333332234677


Q ss_pred             ccCCCCCHHHHHHHcCC
Q 043390          120 RNNNGGTALLGAAHNGK  136 (150)
Q Consensus       120 ~~~~g~tpl~~a~~~g~  136 (150)
                      +|..|+||||+++..+.
T Consensus       173 ~d~~g~t~lh~~~~~~~  189 (301)
T d1sw6a_         173 EDSMNRTILHHIIITSG  189 (301)
T ss_dssp             ECTTCCCHHHHHHHHHT
T ss_pred             cccccCCHHHHHHHHhC
Confidence            89999999998886443