Citrus Sinensis ID: 043399

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
NRNADTKKALNINSTSNFLHYVCYEYPASDPSLFRIAAGAGALFLSNGGKIEEGDCGEPYDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKSHLCNLGRINESLDPGFLNLLRSKCRNVHSGSAVLCSSTNHLFNVFNLTEALKAVVVIAIIYYALGSQPQQIYMGQNGVPAGDQGRKRKTEPTLRELQQQLHTQKRQRITHPRSRRFIGGMDQPVLFELKITCEMMQFVLTLSPEDSLDYGTFTYDMTVCKLTHCYFLYLYLFFLGLILNVSITRDTVDSAVLVYMFL
cccHHHHHcccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccEEEcccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccHHccHHHHccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcEEEEEEEEcccccccccccEEEEEEEEEHHHHHHHHHHHHHHHHHHEEEEcccccccEEEEEEcc
ccccccHHHHccccccccEEEEEEccccccHHHHHHHHHHHHHHHHcccccHHcccccccccccccccccccHcHHHHHHHHHHHHHHccccHHHHHHHHHHcHccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccEccEEcccccHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHHccEEEHHHcHHHccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccEEccccEEcccccHccccEEEEcccccccHHcccccccEEEEEEEEHHHHHHEEEcccccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccEEEEHHcc
nrnadtkkalninstsnFLHYvcyeypasdpslFRIAAGAGAlflsnggkieegdcgepydslqydfnrdscpqaEGRIRAMVWYLRKsrsgvapaFLRLVFRdcsiegcdssvlldeadgvdsekmslpseslnRFYVINIIKEDleeicpgvvsysDTLALAAREGVvlaggpfyplhtgrrdsrlaLADIAtfelplpnadlpeTLASFASRGFDLRETVTFLDAHGIGVIHCIFFKSHlcnlgrinesldpGFLNLLRskcrnvhsgsavlcsstnhlfNVFNLTEALKAVVVIAIIYYAlgsqpqqiymgqngvpagdqgrkrktepTLRELQQQLHTQKrqrithprsrrfiggmdqpVLFELKITCEMMQFVLtlspedsldygtftydmtvcklthCYFLYLYLFFLGLILNVSITRDTVDSAVLVYMFL
nrnadtkkalninstsnfLHYVCYEYPASDPSLFRIAAGAGALFLSNGGKIEEGDCGEPYDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSsvlldeadgvdsekmslpseslnRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFElplpnadlPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKSHLCNLGRINESLDPGFLNLLRSKCRNVHSGSAVLCSSTNHLFNVFNLTEALKAVVVIAIIYYALGSQPQQIYMGQNGVPAGDQGRKRKTEPTLRELQQqlhtqkrqrithprsrrfiggmdQPVLFELKITCEMMQFVLTLSPEDSLDYGTFTYDMTVCKLTHCYFLYLYLFFLGLILNVSITRDTVDSAVLVYMFL
NRNADTKKALNINSTSNFLHYVCYEYPASDPSLFRIAAGAGALFLSNGGKIEEGDCGEPYDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKSHLCNLGRINESLDPGFLNLLRSKCRNVHSGSAVLCSSTNHLFNVFNLTEALKAVVVIAIIYYALGSQPQQIYMGQNGVPAGDQGRKRKTEPTLRELQQQLHTQKRQRITHPRSRRFIGGMDQPVLFELKITCEMMQFVLTLSPEDSLDYGTFTYDMTVCKLTHCyflylylfflglilNVSITRDTVDSAVLVYMFL
***********INSTSNFLHYVCYEYPASDPSLFRIAAGAGALFLSNGGKIEEGDCGEPYDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLD****************LNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKSHLCNLGRINESLDPGFLNLLRSKCRNVHSGSAVLCSSTNHLFNVFNLTEALKAVVVIAIIYYALGSQPQQIYM*****************************************RFIGGMDQPVLFELKITCEMMQFVLTLSPEDSLDYGTFTYDMTVCKLTHCYFLYLYLFFLGLILNVSITRDTVDSAVLVYMF*
******K***NINSTSNFLHYVCYEYPASDPSLFRIAAGAGALFLSNGGKIEEGDC**PYDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADG****KMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKSHLCNLGRINESLDPGFLNLLRS******S**AVLCSSTNHLFNVFNLTEALKAVVVIAIIYYALGSQPQQIYMGQNGVPAGDQGRKRKTEPTLRE*****************************LFELKITCEMMQFVLTLSPEDSLDYGTFTYDMTVCKLTHCYFLYLYLFFLGLILNVSITRDTVDSAVLVYMFL
NRNADTKKALNINSTSNFLHYVCYEYPASDPSLFRIAAGAGALFLSNGGKIEEGDCGEPYDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKSHLCNLGRINESLDPGFLNLLRSKCRNVHSGSAVLCSSTNHLFNVFNLTEALKAVVVIAIIYYALGSQPQQIYMGQNGVP************TLRELQ************HPRSRRFIGGMDQPVLFELKITCEMMQFVLTLSPEDSLDYGTFTYDMTVCKLTHCYFLYLYLFFLGLILNVSITRDTVDSAVLVYMFL
****DTKKALNINSTSNFLHYVCYEYPASDPSLFRIAAGAGALFLSNGGKIEEGDCGEPYDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKSHLCNLGRINESLDPGFLNLLRSKCRNVHSGSAVLCSSTNHLFNVFNLTEALKAVVVIAIIYYALGSQPQQIYMGQNGVPAGDQGRKRKTEPTLRELQQQLHTQKRQRITHPRSRRFIGGMDQPVLFELKITCEMMQFVLTLSPEDSLDYGTFTYDMTVCKLTHCYFLYLYLFFLGLILNVSITRDTVDSAVLVYMFL
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NRNADTKKALNINSTSNFLHYVCYEYPASDPSLFRIAAGAGALFLSNGGKIEEGDCGEPYDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKSHLCNLGRINESLDPGFLNLLRSKCRNVHSGSAVLCSSTNHLFNVFNLTEALKAVVVIAIIYYALGSQPQQIYMGQNGVPAGDQGRKRKTEPTLRELQQQLHTQKRQRITHPRSRRFIGGMDQPVLFELKITCEMMQFVLTLSPEDSLDYGTFTYDMTVCKLTHCYFLYLYLFFLGLILNVSITRDTVDSAVLVYMFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query438 2.2.26 [Sep-21-2011]
O81755404 Putative Peroxidase 48 OS yes no 0.463 0.502 0.509 3e-52
Q9FX85350 Peroxidase 10 OS=Arabidop no no 0.493 0.617 0.391 8e-35
Q02200322 Lignin-forming anionic pe N/A no 0.472 0.642 0.374 2e-33
Q42580327 Peroxidase 21 OS=Arabidop no no 0.456 0.611 0.385 8e-33
Q67Z07325 Peroxidase 2 OS=Arabidops no no 0.515 0.695 0.338 1e-32
P0DI10325 Peroxidase 1 OS=Arabidops no no 0.515 0.695 0.338 1e-32
P37834326 Peroxidase 1 OS=Oryza sat no no 0.481 0.647 0.368 2e-32
Q9FLV5340 Probable peroxidase 61 OS no no 0.436 0.561 0.391 2e-32
O80822328 Peroxidase 25 OS=Arabidop no no 0.470 0.628 0.389 2e-32
Q9SB81330 Peroxidase 42 OS=Arabidop no no 0.470 0.624 0.394 3e-32
>sp|O81755|PER48_ARATH Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3 Back     alignment and function desciption
 Score =  206 bits (524), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 134/206 (65%), Gaps = 3/206 (1%)

Query: 63  LQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGV 122
           L YD+ R+SCP AE  I   +  +      VAP  +RL+F DC IEGCD+SVLLD  +  
Sbjct: 68  LHYDYYRESCPTAEKIIAKAIRDIYNVTPSVAPPIIRLLFHDCFIEGCDASVLLDADEAH 127

Query: 123 DSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTG 182
            SEK + P+ SL  F VI+ +K +LE +CPGVVS +D L LAARE V++AGGPFYPL TG
Sbjct: 128 TSEKDASPNLSLKGFDVIDAVKSELENVCPGVVSCADLLVLAAREAVLVAGGPFYPLETG 187

Query: 183 RRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKSH 242
           R+DS  A  D A  ELP P+A L   L  F+ RGF+ RETV+   AH IG+ HC FFK+ 
Sbjct: 188 RKDSAAAYRDFAEHELPAPDATLSVILQRFSFRGFNERETVSLFGAHSIGITHCTFFKNR 247

Query: 243 LCNL---GRINESLDPGFLNLLRSKC 265
           L N    G+ +  L+PGFL  L++KC
Sbjct: 248 LYNFSATGKPDPELNPGFLQELKTKC 273
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|Q9FX85|PER10_ARATH Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=1 SV=1 Back     alignment and function description
>sp|Q02200|PERX_NICSY Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1 Back     alignment and function description
>sp|Q42580|PER21_ARATH Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1 Back     alignment and function description
>sp|Q67Z07|PER2_ARATH Peroxidase 2 OS=Arabidopsis thaliana GN=PER2 PE=2 SV=1 Back     alignment and function description
>sp|P0DI10|PER1_ARATH Peroxidase 1 OS=Arabidopsis thaliana GN=PER1 PE=1 SV=1 Back     alignment and function description
>sp|P37834|PER1_ORYSJ Peroxidase 1 OS=Oryza sativa subsp. japonica GN=PRX74 PE=2 SV=2 Back     alignment and function description
>sp|Q9FLV5|PER61_ARATH Probable peroxidase 61 OS=Arabidopsis thaliana GN=PER61 PE=3 SV=1 Back     alignment and function description
>sp|O80822|PER25_ARATH Peroxidase 25 OS=Arabidopsis thaliana GN=PER25 PE=2 SV=2 Back     alignment and function description
>sp|Q9SB81|PER42_ARATH Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query438
224054354309 predicted protein [Populus trichocarpa] 0.470 0.666 0.641 2e-68
255550010437 Peroxidase 57 precursor, putative [Ricin 0.527 0.528 0.554 1e-62
359482598404 PREDICTED: putative Peroxidase 48-like [ 0.474 0.514 0.601 3e-62
357468385379 Peroxidase A2 [Medicago truncatula] gi|3 0.431 0.498 0.567 1e-52
297798528363 predicted protein [Arabidopsis lyrata su 0.5 0.603 0.478 4e-51
259016324404 RecName: Full=Putative Peroxidase 48; Sh 0.463 0.502 0.509 2e-50
224096636310 predicted protein [Populus trichocarpa] 0.5 0.706 0.442 2e-46
255544630387 Peroxidase 57 precursor, putative [Ricin 0.474 0.537 0.467 2e-46
356555208384 PREDICTED: putative Peroxidase 48-like [ 0.484 0.552 0.463 4e-46
356528683399 PREDICTED: putative Peroxidase 48-like [ 0.488 0.536 0.454 5e-46
>gi|224054354|ref|XP_002298218.1| predicted protein [Populus trichocarpa] gi|222845476|gb|EEE83023.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 134/209 (64%), Positives = 161/209 (77%), Gaps = 3/209 (1%)

Query: 62  SLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADG 121
           SL+YDF RDSCP+AE  IR +V  L +  S VAPA LRLVF DC IEGCD+S+LLD A G
Sbjct: 15  SLEYDFYRDSCPEAERIIRRVVHELYEVNSSVAPALLRLVFHDCFIEGCDASILLDAATG 74

Query: 122 VDSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHT 181
           +DSEK S P+++L  F +I+ IK ++E +CPGVVS +D +ALA REGVV AGGPFYPL+T
Sbjct: 75  IDSEKDSPPNKNLKGFDIIDKIKSEIEMVCPGVVSCADIVALAGREGVVQAGGPFYPLYT 134

Query: 182 GRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKS 241
           GRRD+  +  D+AT ELP PNADL ETLASFASRGFDLRETV+ L  H IGVIHC FF++
Sbjct: 135 GRRDAMHSFRDVATSELPSPNADLSETLASFASRGFDLRETVSLLGGHSIGVIHCKFFQN 194

Query: 242 HLCNLGRINE---SLDPGFLNLLRSKCRN 267
            L N GR N+   SLD GFLNLLRS+C +
Sbjct: 195 RLYNFGRTNKPDPSLDTGFLNLLRSRCND 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550010|ref|XP_002516056.1| Peroxidase 57 precursor, putative [Ricinus communis] gi|223544961|gb|EEF46476.1| Peroxidase 57 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359482598|ref|XP_002279534.2| PREDICTED: putative Peroxidase 48-like [Vitis vinifera] gi|297743272|emb|CBI36139.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357468385|ref|XP_003604477.1| Peroxidase A2 [Medicago truncatula] gi|355505532|gb|AES86674.1| Peroxidase A2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297798528|ref|XP_002867148.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312984|gb|EFH43407.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|259016324|sp|O81755.3|PER48_ARATH RecName: Full=Putative Peroxidase 48; Short=Atperox P48; Flags: Precursor Back     alignment and taxonomy information
>gi|224096636|ref|XP_002310681.1| predicted protein [Populus trichocarpa] gi|222853584|gb|EEE91131.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255544630|ref|XP_002513376.1| Peroxidase 57 precursor, putative [Ricinus communis] gi|223547284|gb|EEF48779.1| Peroxidase 57 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356555208|ref|XP_003545927.1| PREDICTED: putative Peroxidase 48-like [Glycine max] Back     alignment and taxonomy information
>gi|356528683|ref|XP_003532929.1| PREDICTED: putative Peroxidase 48-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query438
TAIR|locus:2012156350 AT1G49570 [Arabidopsis thalian 0.493 0.617 0.391 1.3e-34
TAIR|locus:2064950350 AT2G39040 [Arabidopsis thalian 0.506 0.634 0.373 9e-34
TAIR|locus:2102087321 AT3G01190 [Arabidopsis thalian 0.504 0.688 0.354 9e-34
TAIR|locus:2061794327 AT2G37130 [Arabidopsis thalian 0.484 0.648 0.380 6.7e-33
TAIR|locus:2817952325 AT1G05240 [Arabidopsis thalian 0.458 0.618 0.357 3.7e-32
TAIR|locus:2207215325 AT1G05250 [Arabidopsis thalian 0.458 0.618 0.357 3.7e-32
TAIR|locus:2207210326 RCI3 "RARE COLD INDUCIBLE GENE 0.504 0.677 0.358 6e-32
TAIR|locus:2141637330 PRXR1 [Arabidopsis thaliana (t 0.465 0.618 0.399 6e-32
TAIR|locus:2028280346 AT1G44970 [Arabidopsis thalian 0.477 0.604 0.384 7.7e-32
TAIR|locus:2166508322 AT5G51890 [Arabidopsis thalian 0.506 0.689 0.369 7.7e-32
TAIR|locus:2012156 AT1G49570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 87/222 (39%), Positives = 119/222 (53%)

Query:    62 SLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADG 121
             +L Y F   SCP+ +  +++ VW   K  S +A + LRL F DC + GCD S+LL++++ 
Sbjct:    47 NLNYRFYDRSCPRLQTIVKSGVWRAFKDDSRIAASLLRLHFHDCFVNGCDGSILLNDSED 106

Query:   122 VDSEKMSLPSE-SLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLH 180
                EK + P+  S+  F VI  IK D+E  CP  VS +D +ALAARE VVL GGPF+P+ 
Sbjct:   107 FKGEKNAQPNRNSVRGFEVIEDIKSDIESSCPLTVSCADIVALAAREAVVLTGGPFWPVP 166

Query:   181 TGRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFK 240
              GRRDS  A    A   LP P   L    A F + G DL++ V    AH IG   C   K
Sbjct:   167 LGRRDSLTASEQAANTNLPSPFEALENITAKFVTLGLDLKDVVVLSGAHTIGFAQCFVIK 226

Query:   241 SHLCNL---GRINESL--DPGFLNLLRSKCRNVHSGSAVLCS 277
               L N    G+ + +L      L+ L+  C NV S  + L +
Sbjct:   227 HRLFNFKGSGQPDPNLAASSALLSKLKDTCPNVDSSDSKLAA 268
GO:0004601 "peroxidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2064950 AT2G39040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102087 AT3G01190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061794 AT2G37130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2817952 AT1G05240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207215 AT1G05250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207210 RCI3 "RARE COLD INDUCIBLE GENE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141637 PRXR1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028280 AT1G44970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166508 AT5G51890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.7LOW CONFIDENCE prediction!
3rd Layer1.11.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 8e-73
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 6e-42
pfam00141180 pfam00141, peroxidase, Peroxidase 6e-40
cd00314255 cd00314, plant_peroxidase_like, Heme-dependent per 9e-09
cd08201264 cd08201, plant_peroxidase_like_1, Uncharacterized 1e-04
cd00691253 cd00691, ascorbate_peroxidase, Ascorbate peroxidas 8e-04
cd00692328 cd00692, ligninase, Ligninase and other manganese- 0.002
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  230 bits (589), Expect = 8e-73
 Identities = 91/215 (42%), Positives = 118/215 (54%), Gaps = 4/215 (1%)

Query: 63  LQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGV 122
           L   F   SCP AE  +R++V    K+   +A A LRL F DC + GCD+SVLLD     
Sbjct: 2   LSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANN 61

Query: 123 DSEKMSLPSESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTG 182
            SEK + P+ SL  F VI+ IK  LE  CPGVVS +D LALAAR+ VVLAGGP Y +  G
Sbjct: 62  TSEKDAPPNLSLRGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLG 121

Query: 183 RRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKSH 242
           RRD R++ A+     LP P   + + ++ FAS+G  + + V    AH IG  HC  F   
Sbjct: 122 RRDGRVSSAN-DVGNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDR 180

Query: 243 LCN---LGRINESLDPGFLNLLRSKCRNVHSGSAV 274
           L N    G  + +LDP +   LR KC        +
Sbjct: 181 LYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTL 215

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>gnl|CDD|173829 cd08201, plant_peroxidase_like_1, Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>gnl|CDD|173825 cd00691, ascorbate_peroxidase, Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>gnl|CDD|173826 cd00692, ligninase, Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 438
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
PLN02608289 L-ascorbate peroxidase 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
PLN02879251 L-ascorbate peroxidase 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 100.0
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 100.0
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 99.96
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 99.92
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 99.91
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.78
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 97.3
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.5e-90  Score=688.90  Aligned_cols=274  Identities=33%  Similarity=0.555  Sum_probs=252.3

Q ss_pred             CCCCCCCcCcccCCCccHHHHHHHHHHHHHHhCCCCcchhHHhhhhcccccCCCceEeccCCCCCcccccCCCCCCCchh
Q 043399           58 EPYDSLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEKMSLPSESLNRF  137 (438)
Q Consensus        58 ~~~~~L~~~fY~~sCP~ae~iVr~~V~~~~~~dp~~Ap~lLRL~FHDCfV~GCDgSILLd~t~~~~sE~~a~~N~gLrgf  137 (438)
                      ..+++|+++||++|||++|+||+++|++++++||+++|++|||+||||||+||||||||+++   ..|+++++|.+|+||
T Consensus        20 ~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~~l~Gf   96 (324)
T PLN03030         20 VQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNLLLRGY   96 (324)
T ss_pred             chhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCcCcchH
Confidence            44467999999999999999999999999999999999999999999999999999999965   379999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCchhhHHHhhhhccccccCCCceeecCCCcCCCCccccccccCCCCCCCChhHHHHHHHHcCC
Q 043399          138 YVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLASFASRGF  217 (438)
Q Consensus       138 ~vId~iKa~lE~~CPg~VScADIlalAArdAV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~v~~Ll~~F~~kGL  217 (438)
                      ++|+.||++||++||++||||||||+||||||+++|||.|+|++||||+++|.+.++. +||+|+.++++|++.|++|||
T Consensus        97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl  175 (324)
T PLN03030         97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGL  175 (324)
T ss_pred             HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999999887775 899999999999999999999


Q ss_pred             Cccccccccccceeecccccccccccccc-C---CCCCCCChhHHHHhcccccCCCCC--CceecCCCccccc-------
Q 043399          218 DLRETVTFLDAHGIGVIHCIFFKSHLCNL-G---RINESLDPGFLNLLRSKCRNVHSG--SAVLCSSTNHLFN-------  284 (438)
Q Consensus       218 s~~DlVALSGAHTIG~ahC~~F~~RLynf-~---~~DPtld~~ya~~L~~~Cp~~~~~--~~~lD~~tp~~Fd-------  284 (438)
                      +.+|||+||||||||++||.+|.+||||| +   .+||+||+.|++.|++.||..+++  .+.+|+.||..||       
T Consensus       176 ~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nl  255 (324)
T PLN03030        176 NTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNL  255 (324)
T ss_pred             CHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHH
Confidence            99999999999999999999999999998 2   369999999999999999963332  2347888887776       


Q ss_pred             -----ccccHHHHhhhhH-HHHH-hhccCC-----------hHHHHHhhhCCCCCCCCCceeccCcchh
Q 043399          285 -----VFNLTEALKAVVV-IAII-YYALGS-----------QPQQIYMGQNGVPAGDQGRKRKTEPTLR  335 (438)
Q Consensus       285 -----lL~SDqaL~~d~~-~~iV-~yA~~~-----------a~AMvKMgnIgVlTG~~GEIRrnC~~~~  335 (438)
                           +|+|||+|+.+++ .++| .||.++           ++||+|||+|+||||++||||++|+++|
T Consensus       256 l~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN  324 (324)
T PLN03030        256 KNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN  324 (324)
T ss_pred             HhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence                 5899999998865 5688 898642           5699999999999999999999999987

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 1e-33
1sch_A294 Peanut Peroxidase Length = 294 6e-33
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 6e-29
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 8e-29
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 1e-28
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 2e-28
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 4e-28
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 5e-25
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 6e-25
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 7e-25
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 7e-25
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 7e-25
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 7e-25
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 8e-25
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 8e-25
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 8e-25
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 1e-24
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 4e-24
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 8e-24
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure 
Iteration: 1

 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/207 (39%), Positives = 112/207 (54%), Gaps = 4/207 (1%)
Query: 63  LQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGV 122
           LQ  F   SCP AE  ++  V     + SG+AP  +R+ F DC + GCD+SVLLD     
Sbjct: 2   LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 123 DSEKMSLPSE-SLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHT 181
            +EK ++P+  SL  F VI   K  +E  CP  VS +D LA AAR+   LAG   Y + +
Sbjct: 62  TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 182 GRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKS 241
           GRRD  ++LA  A  ++P P  +  + + SFA++     E VT   AH IGV HC  F +
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 242 HLCNLGR---INESLDPGFLNLLRSKC 265
            L N      I+ +L P +  LLR+ C
Sbjct: 182 RLYNFNSGSGIDPTLSPSYAALLRNTC 208
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 2e-69
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 2e-69
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 4e-69
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 1e-68
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 1e-67
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 4e-66
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 3e-65
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 1e-27
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 8e-26
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 2e-24
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 4e-24
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 2e-22
2e39_A344 Peroxidase; heme protein, coordination geometry of 9e-22
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 1e-20
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 3e-06
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
 Score =  221 bits (566), Expect = 2e-69
 Identities = 81/207 (39%), Positives = 112/207 (54%), Gaps = 4/207 (1%)

Query: 63  LQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGV 122
           LQ  F   SCP AE  ++  V     + SG+AP  +R+ F DC + GCD+SVLLD     
Sbjct: 2   LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61

Query: 123 DSEKMSLP-SESLNRFYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHT 181
            +EK ++P + SL  F VI   K  +E  CP  VS +D LA AAR+   LAG   Y + +
Sbjct: 62  TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121

Query: 182 GRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKS 241
           GRRD  ++LA  A  ++P P  +  + + SFA++     E VT   AH IGV HC  F +
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181

Query: 242 HLCNL---GRINESLDPGFLNLLRSKC 265
            L N      I+ +L P +  LLR+ C
Sbjct: 182 RLYNFNSGSGIDPTLSPSYAALLRNTC 208
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* Length = 271 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ... Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query438
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 100.0
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=1.3e-93  Score=708.72  Aligned_cols=274  Identities=35%  Similarity=0.548  Sum_probs=257.0

Q ss_pred             CCCcCcccCCCccHHHHHHHHHHHHHHhCCCCcchhHHhhhhcccccCCCceEeccCCCCCcccccCCCCC-CCchhHHH
Q 043399           62 SLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEKMSLPSE-SLNRFYVI  140 (438)
Q Consensus        62 ~L~~~fY~~sCP~ae~iVr~~V~~~~~~dp~~Ap~lLRL~FHDCfV~GCDgSILLd~t~~~~sE~~a~~N~-gLrgf~vI  140 (438)
                      .|+++||++|||++|+|||++|++++.+||+++|++||||||||||+||||||||++++++.+|+++++|. +|+|||+|
T Consensus         1 ~L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDgSiLld~t~~~~~Ek~~~~N~~~lrgf~vi   80 (304)
T 3hdl_A            1 DLQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAIPNNPSLRGFEVI   80 (304)
T ss_dssp             CCEETTTTTTCTTHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHTTTSSSSGGGCCCBTTBCCGGGSTTTTTTCCCHHHH
T ss_pred             CCccChhhCcCcCHHHHHHHHHHHHHHhCCcchHHHHHHheecccCCCCCeeeeecCCCCCcccccCCCcccchHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999988888999999998 79999999


Q ss_pred             HHHHHHHHhhCCCCCchhhHHHhhhhccccccCCCceeecCCCcCCCCccccccccCCCCCCCChhHHHHHHHHcCCCcc
Q 043399          141 NIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLASFASRGFDLR  220 (438)
Q Consensus       141 d~iKa~lE~~CPg~VScADIlalAArdAV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~v~~Ll~~F~~kGLs~~  220 (438)
                      |+||++||++||++||||||||||||+||+++|||.|+|++||+|++++++.+++++||+|+.++++|++.|++|||+++
T Consensus        81 d~iK~~le~~Cp~~VScADilalAardav~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~  160 (304)
T 3hdl_A           81 TAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTAD  160 (304)
T ss_dssp             HHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHCCCCCCEECCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHHHhhCCCCccHHHHHHHHHhhhhhccCCCccccccCccCCCCCCccccccCCCCCCCCHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999999999999999999999988888999999999999999999999999


Q ss_pred             ccccccccceeecccccccccccccc---CCCCCCCChhHHHHhcccccCCCC--CC--ceecCCCccccc---------
Q 043399          221 ETVTFLDAHGIGVIHCIFFKSHLCNL---GRINESLDPGFLNLLRSKCRNVHS--GS--AVLCSSTNHLFN---------  284 (438)
Q Consensus       221 DlVALSGAHTIG~ahC~~F~~RLynf---~~~DPtld~~ya~~L~~~Cp~~~~--~~--~~lD~~tp~~Fd---------  284 (438)
                      ||||||||||||++||.+|.+|||||   +.+||+||+.|++.|++.||..++  ++  +.+|+.||..||         
T Consensus       161 d~VaLsGaHTiG~ahC~~f~~Rly~f~~~~~~DP~ld~~~a~~L~~~Cp~~~~~~~~~~~~lD~~TP~~FDN~Yy~nL~~  240 (304)
T 3hdl_A          161 EMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQL  240 (304)
T ss_dssp             HHHHHGGGGGSSEEEGGGTGGGTSSCSSSSSSCTTSCHHHHHHHHHHSCTTCCTTSCCEEESCSSSTTSCSTHHHHHHHT
T ss_pred             HhhhhhccccccccccchhhhhhcccCCCCCCCCcccHHHHHHHhccCCCCCCCCCccccCCCCCCcccccHHHHHHHHh
Confidence            99999999999999999999999998   358999999999999999997554  32  247888877665         


Q ss_pred             ---ccccHHHHhhhhH-HHHH-hhccCC-------hHHHHHhhhCCCCCCCCCceeccCcchh
Q 043399          285 ---VFNLTEALKAVVV-IAII-YYALGS-------QPQQIYMGQNGVPAGDQGRKRKTEPTLR  335 (438)
Q Consensus       285 ---lL~SDqaL~~d~~-~~iV-~yA~~~-------a~AMvKMgnIgVlTG~~GEIRrnC~~~~  335 (438)
                         +|+|||+|+.++. .++| .||.++       +.||+|||+|+||||++||||++|+++|
T Consensus       241 ~~glL~SDq~L~~d~~t~~~V~~yA~~~~~F~~~Fa~AmvKmg~igv~tg~~GeIR~~C~~~N  303 (304)
T 3hdl_A          241 TLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVN  303 (304)
T ss_dssp             TCCCSHHHHGGGSSHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC
T ss_pred             CcCCCCCCHHHhcCccHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCCCCCCCeeeCCccccC
Confidence               5799999998876 5688 898765       5799999999999999999999999998
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 438
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 3e-53
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 3e-51
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 2e-50
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 3e-49
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 5e-46
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 5e-43
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 2e-21
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 8e-20
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 1e-19
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 9e-19
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 1e-15
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 1e-14
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

 Score =  178 bits (452), Expect = 3e-53
 Identities = 74/215 (34%), Positives = 114/215 (53%), Gaps = 4/215 (1%)

Query: 63  LQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGV 122
           L   F R++CP     +  +++    +   +  + +RL F DC ++GCD SVLL+  D +
Sbjct: 2   LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61

Query: 123 DSEKMSLPSESLNR-FYVINIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHT 181
           +SE+ +LP+ +  R   V+N IK  +E  CP  VS +D LA+AA    VL GGP +P+  
Sbjct: 62  ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121

Query: 182 GRRDSRLALADIATFELPLPNADLPETLASFASRGFDLRETVTFLDAHGIGVIHCIFFKS 241
           GRRDS  A   +A   LP P  +L +  ASFA +G +  + VT    H  G   C  F +
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181

Query: 242 HLCNL---GRINESLDPGFLNLLRSKCRNVHSGSA 273
            L N    G  + +L+  +L +LR++C    +G  
Sbjct: 182 RLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDN 216
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query438
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.96
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.96
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.96
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.95
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.95
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 99.94
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 99.94
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.92
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.91
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=1.7e-89  Score=676.38  Aligned_cols=275  Identities=32%  Similarity=0.543  Sum_probs=257.2

Q ss_pred             CCCcCcccCCCccHHHHHHHHHHHHHHhCCCCcchhHHhhhhcccccCCCceEeccCCCCCcccccCCCCCC-CchhHHH
Q 043399           62 SLQYDFNRDSCPQAEGRIRAMVWYLRKSRSGVAPAFLRLVFRDCSIEGCDSSVLLDEADGVDSEKMSLPSES-LNRFYVI  140 (438)
Q Consensus        62 ~L~~~fY~~sCP~ae~iVr~~V~~~~~~dp~~Ap~lLRL~FHDCfV~GCDgSILLd~t~~~~sE~~a~~N~g-Lrgf~vI  140 (438)
                      ||+.+||++|||++|+||+++|++++.+||+++|++|||+||||||+||||||||++++++.+|+++++|.+ ++||++|
T Consensus         1 qL~~~~Y~~sCp~~e~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDgSill~~~~~~~~E~~~~~N~~~~~g~~~i   80 (304)
T d1fhfa_           1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNINSIRGLDVV   80 (304)
T ss_dssp             CCBTTTTTTTSTTHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTTCSSSGGGCCCCSSCCCGGGSTTTTTTCCCHHHH
T ss_pred             CCCCccccccCcCHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhccCCCCeeEeecCCCCccccccCCcccccchhHHHH
Confidence            799999999999999999999999999999999999999999999999999999999888899999999997 5999999


Q ss_pred             HHHHHHHHhhCCCCCchhhHHHhhhhccccccCCCceeecCCCcCCCCccccccccCCCCCCCChhHHHHHHHHcCCCcc
Q 043399          141 NIIKEDLEEICPGVVSYSDTLALAAREGVVLAGGPFYPLHTGRRDSRLALADIATFELPLPNADLPETLASFASRGFDLR  220 (438)
Q Consensus       141 d~iKa~lE~~CPg~VScADIlalAArdAV~~~GGP~~~v~~GRrD~~~s~~~~a~~~LP~p~~~v~~Ll~~F~~kGLs~~  220 (438)
                      |.||++||++||++|||||||+||||+||+++|||.|+|++||+|+.+|++.++.++||.|+.++++|++.|++||||.+
T Consensus        81 d~iK~~le~~cp~~VScADIlalAardAv~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~  160 (304)
T d1fhfa_          81 NDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTL  160 (304)
T ss_dssp             HHHHHHHHTTSTTTSCHHHHHHHHHHHHHHTTTCCCCCCCBCCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHhhCCCccCHHHHHHHHHhhhhhhcCCCcccccCCCcCcCccccccccccCCCCCCCHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999999999999999999999888888999999999999999999999999


Q ss_pred             ccccccccceeecccccccccccccc---CCCCCCCChhHHHHhcccccCCCCCCc--eecCCCccccc-----------
Q 043399          221 ETVTFLDAHGIGVIHCIFFKSHLCNL---GRINESLDPGFLNLLRSKCRNVHSGSA--VLCSSTNHLFN-----------  284 (438)
Q Consensus       221 DlVALSGAHTIG~ahC~~F~~RLynf---~~~DPtld~~ya~~L~~~Cp~~~~~~~--~lD~~tp~~Fd-----------  284 (438)
                      ||||||||||||++||.+|.+|+|+|   +.+||++|+.|+..|++.||..+..+.  .+|..||..||           
T Consensus       161 d~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~L~~~c~~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~~  240 (304)
T d1fhfa_         161 DLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLN  240 (304)
T ss_dssp             HHHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHHHHHHSCSSCSSCCEEESCSSSTTSCSTHHHHHHHTTC
T ss_pred             HHHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHHHHHhcCCCCCCCcccccCCCCCCccccHHHHHHhhcC
Confidence            99999999999999999999999998   468999999999999999997664432  36877777665           


Q ss_pred             -ccccHHHHhhhh---HHHHH-hhccCC-------hHHHHHhhhCCCCCCCCCceeccCcchhh
Q 043399          285 -VFNLTEALKAVV---VIAII-YYALGS-------QPQQIYMGQNGVPAGDQGRKRKTEPTLRE  336 (438)
Q Consensus       285 -lL~SDqaL~~d~---~~~iV-~yA~~~-------a~AMvKMgnIgVlTG~~GEIRrnC~~~~~  336 (438)
                       +|+|||+|+.++   +..+| .||.++       ++||+|||+|+||||.+||||++|+++|.
T Consensus       241 glL~SD~~L~~dp~~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~lgv~tg~~GeiR~~C~~~N~  304 (304)
T d1fhfa_         241 GLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVNG  304 (304)
T ss_dssp             CSSHHHHTTTSSTTCSSHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCCC
T ss_pred             cccHhhHHHHhCCCchHHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccCcccCcCC
Confidence             589999999885   46688 899875       57999999999999999999999999983
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure