Citrus Sinensis ID: 043408

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490--
Protein Sequence
NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGMICFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGGGSFHVCCESILKTEDGLFQVTDGRMTGWFDGSPGPRYIGSDHVFLGFDFNMFSDGLDEYYCSDEVFIQFYLEDRRCVDFCEVTKCGIHLLYARDFADSTEDSVWNFSSDEEEELPLLLPTPPKRLKYSVKQSPLVPFVSGSFL
Secondary Structure (PSIPRED)
cccEEEccccccccccccccccccccEEEccccccccccccccccccccEEEEccccccEEccccccccccccEEEcccccccEEcccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEEEcccccccccccccccccccEEEccccccccccccccccccccEEcccccccccccccccccccEEEccccccEEccccccccccccEEEccccccccccccccccccEEEccccccccccccccHHHHHHHccccccccccccccccEEEcccccccccccccccccEEEEEcccccccccccEEEEEEEEEEcccccccccEEEEEEEEEEcccccEEEcccccccccccccccccccccEEEEEEEcccccccccccccccEEEEEEEEEEccccccEEEEEEcEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccHHHccccccccHcccEEEcccccccccccccccccccEEEEcccccccccccccHHcHHHccEEEcccccccccccccccHHHHHEEEcccccHHHHccHHHccHcccEEEEccccccHccccccHHccccccEEEccccccHccccHHcccHHHccEEEcccccccccccccccHHHccEEccccccccccccccccccEEEEccccccccccHHHHHHHcccEEEccccccHcccccccccccEEEcccccccEEccccccccHHHHHHccccccccccccccEEEcccccccHHccccccccEEEEEcccccccccccEEEEEEEEEcccccccccccEEEEEEEEEcccccEEEcccEEccccccccccccccccEEEEEEccccccccccccccccEEEEEEEEEcccccccEEEEEcEEEEEEEcccccccccccccccccccccccccccccccccEEEEEccccccccccccc
Coil and Loop (DISEMBL)
nlvslemphssIKQLWKGVQRLVNLkhlnlshsehltkipdlslatnlesltfrgcTSLLETHSSIQYLNKLIVLNLehcrsltslstsiHLESLKTLILSGCsnlmklpsSIERLSSLILLNLrncsrleglpskicklkslerlnlsgcsnlqrlpneLGNLEALKELKAegiairevpsSIVClknlgrlsfeSFKELPECLGQLSSLRILfldknnferipeSIICLSHLYWLRISYCErlkslpelpcdlsdieaHCCSSLEALSGLSILFTqtswnsqcfdfqhcevprgmicfpgselpewfmfqsmgasaifklpldcfsynFVGFALCAVVAFrdhhdgggsfhVCCESILktedglfqvtdgrmtgwfdgspgpryigsdhvflgfdfnmfsdgldeyycsdEVFIQFYLedrrcvdfcevtkcGIHLLYardfadstedsvwnfssdeeeelplllptppkrlkysvkqsplvpfvsgsfl
Flexible Loop (DISEMBL)
nlvslemphssiKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEgiairevpsSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGMICFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGGGSFHVCCESILKTEDGLFQVTDGRMTGWFDGSPGPRYIGSDHVFLGFDFNMFSDGLDEYYCSDEVFIQFYLEDRRCVDFCEVTKCGIHLLYARDFADSTEDSVWNfssdeeeelplllptppkrlkysvkqsplvpfvsgsfl
Low Complexity Region (SEG)
NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKlpssierlsslillnlrncsrlEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGMICFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGGGSFHVCCESILKTEDGLFQVTDGRMTGWFDGSPGPRYIGSDHVFLGFDFNMFSDGLDEYYCSDEVFIQFYLEDRRCVDFCEVTKCGIHLLYARDFADSTEDSVWNFSSDeeeelplllptppKRLKYSVKQSPLVPFVSGSFL
Disordered region (IsUnstruct)
***********IKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGMICFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGGGSFHVCCESILKTEDGLFQVTDGRMTGWFDGSPGPRYIGSDHVFLGFDFNMFSDGLDEYYCSDEVFIQFYLEDRRCVDFCEVTKCGIHLLYARDFADSTEDSVWNF*************************************
Disordered Region (DISOPRED)
NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGMICFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGGGSFHVCCESILKTEDGLFQVTDGRMTGWFDGSPGPRYIGSDHVFLGFDFNMFSDGLDEYYCSDEVFIQFYLEDRRCVDFCEVTKCGIHLLYA***************************************************
Disordered Region (DISEMBL)
********HSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGMICFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGGGSFHVCCESILKTEDGLFQVTDGRMTGWFDGSPGPRYIGSDHVFLGFDFNMFSDGLDEYYCSDEVFIQFYLEDRRCVDFCEVTKCGIHLLYARDFADSTEDSVWNFSSDEEEELPLLLPTPPKRLKYSVKQSPLVPFVSGSFL
Disordered Region (DISPRO)
NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGMICFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGGGSFHVCCESILKTEDGLFQVTDGRMTGWFDGSPGPRYIGSDHVFLGFDFNMFSDGLDEYYCSDEVFIQFYLEDRRCVDFCEVTKCGIHLLYARD******************ELPLLLPTPPKRLKYSVKQSPLVPFVSGS*L
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGMICFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGGGSFHVCCESILKTEDGLFQVTDGRMTGWFDGSPGPRYIGSDHVFLGFDFNMFSDGLDEYYCSDEVFIQFYLEDRRCVDFCEVTKCGIHLLYARDFADSTEDSVWNFSSDEEEELPLLLPTPPKRLKYSVKQSPLVPFVSGSFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	492	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.680	0.292	0.311	2e-39
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.396	0.102	0.426	4e-29
Q9FL92	1372	Probable WRKY transcripti	no	no	0.825	0.295	0.271	1e-23
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.636	0.240	0.306	2e-22
O82500	1095	Putative disease resistan	no	no	0.581	0.261	0.277	9e-21
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.776	0.236	0.249	1e-18
Q9FH83	1288	Probable WRKY transcripti	no	no	0.906	0.346	0.258	8e-18
Q9LZ25	811	Probable disease resistan	no	no	0.308	0.187	0.322	5e-13
Q9LVT1	623	Putative disease resistan	no	no	0.252	0.199	0.328	1e-12
Q9SZA7	816	Probable disease resistan	no	no	0.243	0.147	0.380	2e-12

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  163 bits (413), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/417 (31%), Positives = 192/417 (46%), Gaps = 82/417 (19%)

Query: 2    LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE 61
            LV L++ H+S++ LW   + L +L+ ++LS S+ LT+ PD +   NLE +    C++L E
Sbjct: 598  LVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEE 657

Query: 62   THSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLIL 121
             H S+   +K+I L L  C+SL      +++ESL+ L L  C +L KLP    R+   I 
Sbjct: 658  VHHSLGCCSKVIGLYLNDCKSLKRFPC-VNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQ 716

Query: 122  LNLR------------------------NCSRLEGLPSKICKLKSLERLNLSGCSNLQRL 157
            ++++                        N   L  LPS IC+LKSL  L++SGCS L+ L
Sbjct: 717  IHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESL 776

Query: 158  PNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKE----------------- 200
            P E+G+L+ L+   A    I   PSSI+ L  L  L F  FK+                 
Sbjct: 777  PEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPVAEGLHSLE 836

Query: 201  -------------LPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKS 247
                         LPE +G LSSL+ L L +NNFE +P SI  L  L  L +  C+RL  
Sbjct: 837  YLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQ 896

Query: 248  LPELPCDLSDIEAHCCSSLEALS------------GLSILFTQTSWNSQCFD-FQHCEVP 294
            LPELP +L+++   C  +L+ +              L      T +N   +  FQ+    
Sbjct: 897  LPELPPELNELHVDCHMALKFIHYLVTKRKKLHRVKLDDAHNDTMYNLFAYTMFQNISSM 956

Query: 295  R---------GMICFPGSELPE----WFMFQSMGASAIFKLPLDCF-SYNFVGFALC 337
            R          +  F G   PE    WF  Q   +S    LP + +    F+GFA+C
Sbjct: 957  RHDISASDSLSLTVFTGQPYPEKIPSWFHHQGWDSSVSVNLPENWYIPDKFLGFAVC 1013

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  129 bits (325), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/223 (42%), Positives = 123/223 (55%), Gaps = 28/223 (12%)

Query: 1    NLVSLEMPHSSIKQLWKGVQ--------RLVNLKHLNLSHSEHLTKIPDLSLATNLESLT 52
            NLV L +P S  K+LWKG +         L  LK + LS+S+ LTKIP LS ATNLE + 
Sbjct: 1228 NLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRLSSATNLEHID 1287

Query: 53   FRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNL------ 106
              GC SLL    SI YL KL+ LNL+ C  L ++ + + LESL+ L LSGCS L      
Sbjct: 1288 LEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEI 1347

Query: 107  --------------MKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCS 152
                           ++PSSI+ L  L  L+L N   L+ LP+ I KLK LE LNLSGC 
Sbjct: 1348 SPNVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCI 1407

Query: 153  NLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSF 195
            +L+R P+    ++ L+ L      I+E+PSSI  L  L  L F
Sbjct: 1408 SLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYLTALDELLF 1450

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 137/505 (27%), Positives = 215/505 (42%), Gaps = 99/505 (19%)

Query: 1    NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            +LV + MP+S +K+LW G + L  LK + L HS+ L  I DL  A NLE +  +GCT L 
Sbjct: 570  HLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQLVDIDDLLKAQNLEVVDLQGCTRLQ 629

Query: 61   ETHSSIQYLNKLIVLNLEHCRSLTS--------------------LSTSIHLESLKTLI- 99
               ++ Q L+ L V+NL  C  + S                    L  SI   + + L+ 
Sbjct: 630  SFPATGQLLH-LRVVNLSGCTEIKSFPEIPPNIETLNLQGTGIIELPLSIVKPNYRELLN 688

Query: 100  -------LSGCSN-----------LMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLK 141
                   LSG SN           LMK+ +S +    L  L L +CSRL  LP+ +  L+
Sbjct: 689  LLAEIPGLSGVSNLEQSDLKPLTSLMKISTSYQNPGKLSCLELNDCSRLRSLPN-MVNLE 747

Query: 142  SLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV---PSSIVCLKNLGRLSFES- 197
             L+ L+LSGCS L+ +    G    LKEL   G A+R+V   P S+      G +S +S 
Sbjct: 748  LLKALDLSGCSELETIQ---GFPRNLKELYLVGTAVRQVPQLPQSLEFFNAHGCVSLKSI 804

Query: 198  ---FKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCD 254
               FK+LP          + +   N F+  P+ +    + + ++       K +P     
Sbjct: 805  RLDFKKLP----------VHYTFSNCFDLSPQVV----NDFLVQAMANVIAKHIPR---- 846

Query: 255  LSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGM---ICFPGSELPEWFMF 311
                E H              F+Q +      D Q  E+ + +    C P        + 
Sbjct: 847  ----ERHVTG-----------FSQKTVQRSSRDSQQ-ELNKTLAFSFCAPSHANQNSKLD 890

Query: 312  QSMGASAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGGGSFHVCCESILKTEDGLFQVTD 371
               G+S++ +L    +    VGFA+   VAF + +     F + C    K ++G     +
Sbjct: 891  LQPGSSSMTRLD-PSWRNTLVGFAMLVQVAFSEGYCDDTDFGISCVCKWKNKEGHSHRRE 949

Query: 372  GRMTGWFDGSPGPRYIGSDHVFLGFDFNMFSD---GLDEYYCSDEVFIQFYLEDRR---C 425
              +  W  G    + +  DH F+ FD NM  D   G D    +D V  +F+  +++    
Sbjct: 950  INLHCWALG----KAVERDHTFVFFDVNMRPDTDEGNDPDIWADLVVFEFFPVNKQRKPL 1005

Query: 426  VDFCEVTKCGIHLLYARDFADSTED 450
             D C VT+CG+ L+ A +   S E+
Sbjct: 1006 NDSCTVTRCGVRLITAVNCNTSIEN 1030

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 172/365 (47%), Gaps = 52/365 (14%)

Query: 2   LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE 61
           LV+L M +S +++LW+G   L +LK +NL +S +L +IPDLSLA NLE L   GC SL+ 
Sbjct: 592 LVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINLEELDLVGCKSLVT 651

Query: 62  THSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLIL 121
             SSIQ   KLI L++  C+ L S  T ++LESL+ L L+GC NL   P+     S +  
Sbjct: 652 LPSSIQNATKLIYLDMSDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIKMGCSDVDF 711

Query: 122 LNLRN------CSRLEGLPSKICKLKSLER-------------LNLSGCSN--LQRLPNE 160
              RN      C   + LP+ +  L  L R             LN+ G  +  L      
Sbjct: 712 PEGRNEIVVEDCFWNKNLPAGLDYLDCLTRCMPCEFRPEQLAFLNVRGYKHEKLWEGIQS 771

Query: 161 LGNLEALKELKAEGIAIREVP--SSIVCLKNLGRLSFESFKELPECLGQLSSL-RILFLD 217
           LG+LE +   ++E +   E+P  S    L++L   + +S   LP  +G L  L R+   +
Sbjct: 772 LGSLEGMDLSESENLT--EIPDLSKATKLESLILNNCKSLVTLPSTIGNLHRLVRLEMKE 829

Query: 218 KNNFERIPESIICLSHLYWLRISYCERLKSLP-----------------ELPCDLSDIEA 260
               E +P   + LS L  L +S C  L+S P                 E+P  + ++  
Sbjct: 830 CTGLEVLPTD-VNLSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIEEIPSTIGNLHR 888

Query: 261 HCCSSLEALSGLSILFTQTSWNS-QCFDFQHCEVPRGMICFP-GSELPEWFMFQSMGASA 318
                ++  +GL +L T  + +S +  D   C   R    FP  SE  +W   ++   +A
Sbjct: 889 LVRLEMKKCTGLEVLPTDVNLSSLETLDLSGCSSLRS---FPLISESIKWLYLEN---TA 942

Query: 319 IFKLP 323
           I ++P
Sbjct: 943 IEEIP 947

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  102 bits (253), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 154/368 (41%), Gaps = 82/368 (22%)

Query: 2   LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE 61
           LV L M HS +K+LW GVQ L NL+ +NL+ S +L  +P+L  AT L  L    C SL+E
Sbjct: 610 LVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRNLEILPNLMEATKLNRLDLGWCESLVE 669

Query: 62  THSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLIL 121
             SSI+ L  LI+L +  C+ L  + T+I+L SL+                        +
Sbjct: 670 LPSSIKNLQHLILLEMSCCKKLEIIPTNINLPSLE------------------------V 705

Query: 122 LNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVP 181
           L+ R C+RL+  P     ++ L  +                           G AI EVP
Sbjct: 706 LHFRYCTRLQTFPEISTNIRLLNLI---------------------------GTAITEVP 738

Query: 182 SSIVCLKNLGRLSFESFK-----ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYW 236
            S+     +  +  E  K      +P  L +L  LR    +    E IP  +  L  L  
Sbjct: 739 PSVKYWSKIDEICMERAKVKRLVHVPYVLEKL-CLR----ENKELETIPRYLKYLPRLQM 793

Query: 237 LRISYCERLKSLPELPCDLSDIEAHCCSSLEALSG------LSILF---------TQTSW 281
           + ISYC  + SLP+LP  +S + A  C SL+ L G      + + F          Q   
Sbjct: 794 IDISYCINIISLPKLPGSVSALTAVNCESLQILHGHFRNKSIHLNFINCLKLGQRAQEKI 853

Query: 282 NSQCFDFQHCEVPRGMICFPGSELPEWFMFQSMGAS-AIFKLPLDCFSYNFVGFALCAVV 340
           +   +  Q   +       PG  +P +F ++S G+S  I    +D   +N   F +C V+
Sbjct: 854 HRSVYIHQSSYIAD---VLPGEHVPAYFSYRSTGSSIMIHSNKVDLSKFN--RFKVCLVL 908

Query: 341 AFRDHHDG 348
                 +G
Sbjct: 909 GAGKRFEG 916

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 197/493 (39%), Gaps = 111/493 (22%)

Query: 1    NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            +LV L MP+S + +L   V+ LV LK L LSHS  L +   L  A N+E +  +GCT L 
Sbjct: 594  HLVKLSMPYSQLHKLGTRVKDLVMLKRLILSHSLQLVECDILIYAQNIELIDLQGCTGLQ 653

Query: 61   ETHSSIQYLNKLIVLNLEHCRSLTSLS------TSIHLESLKT----------------- 97
                + Q L  L V+NL  C  +   S        +HL+  +                  
Sbjct: 654  RFPDTSQ-LQNLRVVNLSGCTEIKCFSGVPPNIEELHLQGTRIREIPIFNATHPPKVKLD 712

Query: 98   ----------------LILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLK 141
                            + L   +NL  + S+   +  L+ LN++ CS L GLP  +  L+
Sbjct: 713  RKKLWNLLENFSDVEHIDLECVTNLATVTSNNHVMGKLVCLNMKYCSNLRGLPDMVS-LE 771

Query: 142  SLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKEL 201
            SL+ L LSGCS L+++   +G    LK+L   G AIRE+P                  +L
Sbjct: 772  SLKVLYLSGCSELEKI---MGFPRNLKKLYVGGTAIRELP------------------QL 810

Query: 202  PECLGQLSS-----LRILFLDKNNFERIPESIICLSHLYWLRISYCERLKS--LPELPCD 254
            P  L  L++     L+ + LD   FE++P   I          S C R  S  + E    
Sbjct: 811  PNSLEFLNAHGCKHLKSINLD---FEQLPRHFI---------FSNCYRFSSQVIAEF--- 855

Query: 255  LSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGMICFPGSELPEWFMFQSM 314
               +E    +SL       ++                + P  +IC P             
Sbjct: 856  ---VEKGLVASLARAKQEELI----------------KAPEVIICIPMDTRQRSSFRLQA 896

Query: 315  GASAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGGGSFHVCCESILKTEDGLFQVTDGRM 374
            G +A+  L +        GF++  VV+F+D +       + C    KT +        R 
Sbjct: 897  GRNAMTDL-VPWMQKPISGFSMSVVVSFQDDYHNDVGLRIRCVGTWKTWNNQPDRIVERF 955

Query: 375  TGWFDGSPGPRYIGSDHVFLGFDFNMFSDGLDEYYCS---DEVFIQFYL---EDRRCVDF 428
               +  +  P+ + +DH+F+ +D  M     +E + S    EV  +F+    E+      
Sbjct: 956  FQCWAPTEAPKVV-ADHIFVLYDTKMHPSDSEENHISMWAHEVKFEFHTVSGENNPLGAS 1014

Query: 429  CEVTKCGIHLLYA 441
            C+VT+CG+ ++ A
Sbjct: 1015 CKVTECGVEVITA 1027

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score = 92.0 bits (227), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 134/519 (25%), Positives = 213/519 (41%), Gaps = 73/519 (14%)

Query: 1    NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            +LV + MP+S +++LW G + L  L+ + L HS HL  I DL  A NLE +  +GCT  L
Sbjct: 577  HLVEINMPYSQLQKLWGGTKNLEMLRTIRLCHSHHLVDIDDLLKAENLEVIDLQGCTR-L 635

Query: 61   ETHSSIQYLNKLIVLNLEHCRSLTSL------STSIHLESLKTLI--------------- 99
            +   +   L +L V+NL  C  + S+         +HL+    L                
Sbjct: 636  QNFPAAGRLLRLRVVNLSGCIKIKSVLEIPPNIEKLHLQGTGILALPVSTVKPNHRELVN 695

Query: 100  -----------LSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNL 148
                       L   ++L++  SS + L  LI L L++CS L+ LP+ +  L  L  L+L
Sbjct: 696  FLTEIPGLSEELERLTSLLESNSSCQDLGKLICLELKDCSCLQSLPN-MANL-DLNVLDL 753

Query: 149  SGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQL 208
            SGCS+L  +    G    LK+L   G AIREVP     L+ L        + LP  +  L
Sbjct: 754  SGCSSLNSIQ---GFPRFLKQLYLGGTAIREVPQLPQSLEILNAHG-SCLRSLPN-MANL 808

Query: 209  SSLRILFLDK-NNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSS-- 265
              L++L L   +  E I      L  LY+   +    L+ +P+LP  L  + AH   S  
Sbjct: 809  EFLKVLDLSGCSELETIQGFPRNLKELYFAGTT----LREVPQLPLSLEVLNAHGSDSEK 864

Query: 266  LEALSGLSILFTQTSWNSQCFDFQHC----EVPRGMICFPGSELPEW------------- 308
            L      +  F  +      F  +       +PRG      ++ P +             
Sbjct: 865  LPMHYKFNNFFDLSQQVVNDFLLKTLTYVKHIPRGYTQELINKAPTFSFSAPSHTNQNAT 924

Query: 309  FMFQSMGASAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGGGSFHVCCESILKTEDGLFQ 368
            F  QS G+S + +L    +    VGF +   VAF + +       + C      ++G   
Sbjct: 925  FDLQS-GSSVMTRLN-HSWRNTLVGFGMLVEVAFPEDYCDATDVGISCVCRWSNKEGRSC 982

Query: 369  VTDGRMTGWFDGSPGPRYIGSDHVFLGFDFNM---FSDGLDEYYCSDEVFIQFYL--EDR 423
              + +   W      P+ +  DH F+  D NM     +G D    +  V  +F+   +  
Sbjct: 983  RIERKFHCWAPWQVVPK-VRKDHTFVFSDVNMRPSTGEGNDPDIWAGLVVFEFFPINQQT 1041

Query: 424  RCV-DFCEVTKCGIHLLYARDFADSTEDSVWNFSSDEEE 461
            +C+ D   V +CG+ ++       S E+     S D  E
Sbjct: 1042 KCLNDRFTVRRCGVRVINVATGNTSLENIALVLSLDPVE 1080

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ25|DRL30_ARATH Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 92/161 (57%), Gaps = 9/161 (5%)

Query: 39  IPDLSLAT----NLESLTFRGC---TSLLETHSSI-QYLNKLIVLNLEHCRSLTSLSTSI 90
           +P+LS +T    NL  L+   C   TSL +T   I Q   KL  L ++HC  L  L ++I
Sbjct: 612 VPELSSSTVPLQNLHKLSLIFCKINTSLDQTELDIAQIFPKLSDLTIDHCDDLLELPSTI 671

Query: 91  -HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLS 149
             + SL ++ ++ C  + +LP ++ +L +L LL L  C  L  LP +IC+L  L+ +++S
Sbjct: 672 CGITSLNSISITNCPRIKELPKNLSKLKALQLLRLYACHELNSLPVEICELPRLKYVDIS 731

Query: 150 GCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNL 190
            C +L  LP ++G ++ L+++     ++  +P+S+V L +L
Sbjct: 732 QCVSLSSLPEKIGKVKTLEKIDTRECSLSSIPNSVVLLTSL 772

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 74/125 (59%), Gaps = 1/125 (0%)

Query: 67  QYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLR 125
           Q   KL  + +++C  L  L ++I  + SL ++ ++ C N+ +LP +I +L +L LL L 
Sbjct: 460 QIFPKLTDITIDYCDDLAELPSTICGITSLNSISITNCPNIKELPKNISKLQALQLLRLY 519

Query: 126 NCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIV 185
            C  L+ LP +IC+L  L  +++S C +L  LP ++GN+  L+++     ++  +PSS V
Sbjct: 520 ACPELKSLPVEICELPRLVYVDISHCLSLSSLPEKIGNVRTLEKIDMRECSLSSIPSSAV 579

Query: 186 CLKNL 190
            L +L
Sbjct: 580 SLTSL 584

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZA7|DRL29_ARATH Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana GN=At4g33300 PE=2 SV=3

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 71  KLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSR 129
           KL  L ++HC  L +L +SI  L SL  L ++ C  L +LP ++ +L +L +L L  C  
Sbjct: 657 KLGDLTIDHCDDLVALPSSICGLTSLSCLSITNCPRLGELPKNLSKLQALEILRLYACPE 716

Query: 130 LEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKN 189
           L+ LP +IC+L  L+ L++S C +L  LP E+G L+ L+++        + PSS V LK+
Sbjct: 717 LKTLPGEICELPGLKYLDISQCVSLSCLPEEIGKLKKLEKIDMRECCFSDRPSSAVSLKS 776

Query: 190 L 190
           L
Sbjct: 777 L 777

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
359496026	1250	PREDICTED: TMV resistance protein N-like	0.898	0.353	0.366	2e-68
359493483	1274	PREDICTED: TMV resistance protein N-like	0.880	0.339	0.350	2e-66
359493487	1162	PREDICTED: TMV resistance protein N-like	0.707	0.299	0.376	5e-65
15234388	1219	TIR-NBS-LRR class disease resistance pro	0.904	0.365	0.338	4e-60
297813715	1212	hypothetical protein ARALYDRAFT_327329 [	0.906	0.367	0.343	1e-59
297794743	1184	predicted protein [Arabidopsis lyrata su	0.892	0.370	0.343	5e-59
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.888	0.388	0.341	1e-57
15242338	1231	TIR-NBS-LRR class disease resistance pro	0.906	0.362	0.322	2e-57
240256011	1210	TIR-NBS-LRR class disease resistance pro	0.900	0.366	0.348	3e-57
227438287	1207	disease resistance protein [Brassica rap	0.878	0.357	0.321	2e-56

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 195/532 (36%), Positives = 267/532 (50%), Gaps = 90/532 (16%)

Query: 1    NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            NLV L +    +++LWKGV+ +  L+ ++LSHS++L + PD S   NLE L F GCT L 
Sbjct: 628  NLVELNLCCCYVEELWKGVKHMEKLECIDLSHSQYLVRTPDFSGIPNLERLIFEGCTDLR 687

Query: 61   ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNL-------------- 106
            E H S+  L+KLI LNL+ C++L    +SI LESLK LILSGCS L              
Sbjct: 688  EVHQSLGVLSKLIFLNLKDCKNLQCFPSSIELESLKVLILSGCSKLDNFPEILENMEGLR 747

Query: 107  ---------MKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRL 157
                      +LP S+E L+ L+LLNLRNC RL  LPS IC LKSL  L LSGCS L++L
Sbjct: 748  ELFLDGTAIKELPLSVEHLNGLVLLNLRNCERLITLPSSICNLKSLSTLTLSGCSQLEKL 807

Query: 158  PNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFE--------------------- 196
            P  LGNLE L EL A+G A+ + PSSIV L+NL  LSF+                     
Sbjct: 808  PENLGNLECLVELVADGSAVIQPPSSIVLLRNLKVLSFQGCNGSPSSRWNSRFWSMLCLR 867

Query: 197  -----------------SFKE------------LPECL-GQLSSLRILFLDKNNFERIPE 226
                             S K+            LP  L G LSSL  L L  N+F  +P 
Sbjct: 868  RISDSTGFRLPSLSGLCSLKQLNLSDCNIKEGALPNDLGGYLSSLEYLNLKGNDFVTLPT 927

Query: 227  SIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLS----ILFTQT--- 279
             I  L +L  L +  C+RL+ LP LP +++ I A  C+SLE LSGLS    + FT +   
Sbjct: 928  GISKLCNLKALYLGCCKRLQELPMLPPNINRINAQNCTSLETLSGLSAPCWLAFTNSFRQ 987

Query: 280  SWNSQCFDFQHCEVPRGMICFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALCAV 339
            +W  + +  +   +P+     PG+ +PEWF  Q MG S + +LP   ++ NF+GFA+C V
Sbjct: 988  NWGQETYLAEVSRIPKFNTYLPGNGIPEWFRNQCMGDSIMVQLPSHWYNDNFLGFAMCIV 1047

Query: 340  VAFRDHHDGGGSFHVC-CESILKTEDGLFQVTDGRMTGWFDGSPGPRYIGSDHVFLGF-- 396
             A ++ +       +C  ES       L    D  +  W   S G  ++ SDH++LG+  
Sbjct: 1048 FALKEPNQCSRGAMLCELESSDLDPSNLGCFLDHIV--WEGHSDGDGFVESDHLWLGYHP 1105

Query: 397  DFNMFSDGLDEYYCSDEVFIQFYLEDRRCVDFCEVTKCGIHLLYARDFADST 448
            +F +  D +D       +   F +         EV  CG  L+Y  D  D  
Sbjct: 1106 NFPIKKDDMDWPNKLSHIKASFVIAGIP----HEVKWCGFRLVYMEDLNDDN 1153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493483|ref|XP_003634610.1| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 196/559 (35%), Positives = 254/559 (45%), Gaps = 126/559 (22%)

Query: 2    LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE 61
            LV L M  S +KQ W+G +    LK + LSHS+HLTKIPD S   NL  L  +GCTSL+E
Sbjct: 633  LVELNMCFSRLKQPWEGKKGFEKLKSIKLSHSQHLTKIPDFSGVPNLRRLILKGCTSLVE 692

Query: 62   THSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMK------------- 108
             H SI  L KLI LNLE C+ L S S+SIH+ESL+ L LSGCS L K             
Sbjct: 693  VHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLPN 752

Query: 109  ----------LPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP 158
                      LP SIE L+ L LLNL+ C  LE LP  I KLKSL+ L LSGCS L+ LP
Sbjct: 753  LSLEGTAIKGLPLSIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSGCSELKDLP 812

Query: 159  NELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK------------------- 199
            + LG+L+ L EL A+G  ++EVP SI  L NL  LS    K                   
Sbjct: 813  DNLGSLQCLTELNADGSGVQEVPPSITLLTNLQILSLAGCKGGESKSRNMIFSFHSSPTE 872

Query: 200  --------------------------ELPECLGQLSSLRILFLDKNNFERIPESIICLSH 233
                                       LP  LG + SL  L L +N+F  IP S+  LS 
Sbjct: 873  ELRLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSR 932

Query: 234  LYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHC-- 291
            L  L + YC+ L+SLPELP  +  + AH C+SLE  +  S  +T   +    F+F +C  
Sbjct: 933  LRSLTLEYCKSLQSLPELPSSVESLNAHSCTSLETFTCSSSAYTSKKFGDLRFNFTNCFR 992

Query: 292  ---------------------EVPRGMI--------------CFPGSELPEWFMFQSMGA 316
                                  +P+ ++                PG+ +PEWF  QS+G 
Sbjct: 993  LGENQGSDIVGAILEGIQLMSSIPKFLVPDRGIPTPHNEYNALVPGNRIPEWFRHQSVGC 1052

Query: 317  SAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGG-----GSFH-VCCESILKTEDGLFQVT 370
            S   +LP   ++   +G A CA + F+   DG       SF  VC  +    E GL  + 
Sbjct: 1053 SVNIELPQHWYNTKLMGLAFCAALNFKGAMDGNPGTEPSSFGLVCYLNDCFVETGLHSL- 1111

Query: 371  DGRMTGWFDGSPGPRYIGSDHVFLGF-DFNMFSDGLDEYY--CSDEVFIQFYLEDRRCVD 427
                   +    G ++I SDH    +         L  ++   SD V   F L       
Sbjct: 1112 -------YTPPEGSKFIESDHTLFEYISLARLEICLGNWFRKLSDNVVASFALTGSD--- 1161

Query: 428  FCEVTKCGIHLLYARDFAD 446
              EV KCGI L+Y  D  D
Sbjct: 1162 -GEVKKCGIRLVYEEDEKD 1179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 170/452 (37%), Positives = 219/452 (48%), Gaps = 104/452 (23%)

Query: 1    NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
             LV L M  S +KQLW+G +    LK + LSHS+HLTK PD S   NL  L  +GCTSL+
Sbjct: 638  KLVELNMCFSRLKQLWEGKKGFEKLKSIKLSHSQHLTKTPDFSGVPNLRRLILKGCTSLV 697

Query: 61   ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMK------------ 108
            E H SI  L KLI LNLE C+ L S S+SIH+ESL+ L LSGCS L K            
Sbjct: 698  EVHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLP 757

Query: 109  -----------LPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRL 157
                       LP SIE L+ L LLNL+ C  LE LP  I KLKSL+ L L GCS L+ L
Sbjct: 758  NLSLEGTAIKGLPLSIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLTLCGCSELKEL 817

Query: 158  PNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK------------------ 199
            P++LG+L+ L EL A+G  I+EVP SI  L NL +LS    K                  
Sbjct: 818  PDDLGSLQCLAELNADGSGIQEVPPSITLLTNLQKLSLAGCKGGDSKSRNMVFSFHSSPT 877

Query: 200  ---------------------------ELPECLGQLSSLRILFLDKNNFERIPESIICLS 232
                                        LP  LG + SL  L L +N+F  IP S+  LS
Sbjct: 878  EELRLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLS 937

Query: 233  HLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHC- 291
             L  L + YC+ L+SLPELP  +  + AH C+SLE  S  S  +T   +    F+F +C 
Sbjct: 938  RLRSLTLEYCKSLQSLPELPSSVESLNAHSCTSLETFSCSSGAYTSKKFGDLRFNFTNCF 997

Query: 292  ----------------------EVPRGMICF-------------PGSELPEWFMFQSMGA 316
                                   +P+ ++ +             PGS +PEWF  QS+G 
Sbjct: 998  RLGENQGSDIVGAILEGIQLMSSIPKFLVPWGIPTPHNEYNALVPGSRIPEWFRHQSVGC 1057

Query: 317  SAIFKLPLDCFSYNFVGFALCAVVAFRDHHDG 348
            S   +LP   ++   +G A CA + F+   DG
Sbjct: 1058 SVNIELPPHWYNTKLMGLAFCAALNFKGAMDG 1089

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234388|ref|NP_192938.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana] gi|4586106|emb|CAB40942.1| putative disease resistance protein (TMV N-like) [Arabidopsis thaliana] gi|7267902|emb|CAB78244.1| putative disease resistance protein (TMV N-like) [Arabidopsis thaliana] gi|332657683|gb|AEE83083.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]

 Score =  238 bits (608), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 262/541 (48%), Gaps = 96/541 (17%)

Query: 1    NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            NLV L++PHS ++++W   + +  LK ++LSHS +L +   L+ A NLE L   GCTSL 
Sbjct: 621  NLVDLKLPHSQLEEIWDDEKDVGMLKWVDLSHSINLRQCLGLANAHNLERLNLEGCTSLK 680

Query: 61   ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMK------------ 108
            +  S+I  L KLI LNL  C SL SL   I  +SL+TLILSGCS+L K            
Sbjct: 681  KLPSTINCLEKLIYLNLRDCTSLRSLPKGIKTQSLQTLILSGCSSLKKFPLISENVEVLL 740

Query: 109  --------LPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160
                    LP SI+    L LLNL+NC +L+ L S + KLK L+ L LSGCS L+  P  
Sbjct: 741  LDGTVIKSLPESIQTFRRLALLNLKNCKKLKHLSSDLYKLKCLQELILSGCSQLEVFPEI 800

Query: 161  LGNLEALKELKAEGIAIREVPSSIVCLKNLGR---------------------------- 192
              ++E+L+ L  +  +I E+P  ++ L N+                              
Sbjct: 801  KEDMESLEILLMDDTSITEMPK-MMHLSNIKTFSLCGTSSHVSVSMFFMPPTLGCSRLTD 859

Query: 193  --LSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPE 250
              LS  S  +LP+ +G LSSL+ L L  NN E +PES   L++L W  + +C+ LKSLP 
Sbjct: 860  LYLSRCSLYKLPDNIGGLSSLQSLCLSGNNIENLPESFNQLNNLKWFDLKFCKMLKSLPV 919

Query: 251  LPCDLSDIEAHCCSSLEALS---------------------------------GLSILFT 277
            LP +L  ++AH C SLE L+                                 G + + +
Sbjct: 920  LPQNLQYLDAHECESLETLANPLTPLTVGERIHSMFIFSNCYKLNQDAQASLVGHARIKS 979

Query: 278  QTSWNSQCFDFQHCEVPRGM--ICFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFA 335
            Q   N+    +    VP  +  IC+P +E+P WF  Q +G S    LP      NFVG A
Sbjct: 980  QLMANASAKRYYRGFVPEPLVGICYPATEIPSWFCHQRLGRSLEIPLPPHWCDINFVGLA 1039

Query: 336  LCAVVAFRDHHDGGGSFHVCCESILKTEDGLFQVTDGRMTGWFDG----SPGPRYIGSDH 391
            L  VV+F+D+ D    F V C    + +D  F   D  + GW +     S   R + SDH
Sbjct: 1040 LSVVVSFKDYEDSAKRFSVKCCGNFENKDSSFTRFDFTLAGWNEPCGSLSHESRKLTSDH 1099

Query: 392  VFLGFDFNMFSD---GLDEYYCSDEVFIQFYLED---RRCVDFCEVTKCGIHLLYARDFA 445
            VF+G++         G     C  +   +FY+ D   R+ ++ CEV KCG+ L+Y  +  
Sbjct: 1100 VFMGYNSCFLVKNVHGESNSCCYTKASFEFYVTDDETRKKIETCEVIKCGMSLMYVPEDD 1159

Query: 446  D 446
            D
Sbjct: 1160 D 1160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813715|ref|XP_002874741.1| hypothetical protein ARALYDRAFT_327329 [Arabidopsis lyrata subsp. lyrata] gi|297320578|gb|EFH51000.1| hypothetical protein ARALYDRAFT_327329 [Arabidopsis lyrata subsp. lyrata]

 Score =  237 bits (604), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 185/539 (34%), Positives = 264/539 (48%), Gaps = 93/539 (17%)

Query: 1    NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            NLV L++PHS + ++W   +    LK ++LSHS +L +   L+ A NLE L   GCTSL 
Sbjct: 610  NLVDLKLPHSQLAEIWDDEKDAGMLKWVDLSHSLNLHQCLGLANAQNLERLNLEGCTSLK 669

Query: 61   ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMK------------ 108
            +  ++I  L KL+ LNL  C SL SL   +  +SL+TLILSGCS L K            
Sbjct: 670  KLPTTINGLEKLVYLNLRDCTSLRSLPKGLKTQSLQTLILSGCSRLKKFPLISENVEVLL 729

Query: 109  --------LPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160
                    LP SIE L  L LLNL+NC +L+ L S + KLK L+ L LSGCS L+  P  
Sbjct: 730  LDGTAIKSLPESIETLRRLALLNLKNCKKLKHLSSDLYKLKCLQELILSGCSRLEVFPEI 789

Query: 161  LGNLEALKELKAEGIAIREVP----------------SSIVCLK------NLG------- 191
              ++E+L+ L  +  AI E+P                SS V +        LG       
Sbjct: 790  KEDMESLEILLMDDTAITEMPKMMHLSNIQTFSLCGTSSQVSVSMFFMPPTLGCSRLTDL 849

Query: 192  RLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPEL 251
             LS  S  +LP+ +G LSSL+ L L  NN E +PES   L +L W  + +C+ LKSLP L
Sbjct: 850  YLSRCSLYKLPDNIGGLSSLQSLCLSGNNIENLPESFNQLHNLKWFDLKFCKMLKSLPVL 909

Query: 252  PCDLSDIEAHCCSSLEALS--------------------------------GLSILFTQT 279
            P +L  ++AH C SLE L                                 G + + +Q 
Sbjct: 910  PQNLQYLDAHECESLETLENPLTPLTVGERIHSMFIFSNCYKLNQDAQSLVGHARIKSQL 969

Query: 280  SWNSQCFDFQHCEVPRGM--ICFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALC 337
              N+    +    +P  +  IC+  +++P WF  Q +G S    LP      +FVG AL 
Sbjct: 970  MANASVKRYYRGFIPEPLVGICYAATDIPSWFCHQRLGRSLEIPLPPHWCDTDFVGLALS 1029

Query: 338  AVVAFRDHHDGGGSFHVCCESILKTEDGLFQVTDGRMTGWFDG----SPGPRYIGSDHVF 393
             VV+F D+ D    F V C    + +DG F   D  + GW +     S  PR + SDHVF
Sbjct: 1030 VVVSFMDYEDSAKRFSVKCCGKFENQDGSFTRFDFTLAGWNEPCGSLSHEPRKLASDHVF 1089

Query: 394  LGFD--FNMFS-DGLDEYYCSDEVFIQFYLED---RRCVDFCEVTKCGIHLLYARDFAD 446
            +G++  F++ +  G  +  C  +   +FY+ D   R+ ++ CEV KCG+ L+Y  +  D
Sbjct: 1090 MGYNSCFHVKNLHGESKNCCYTKASFEFYVTDDETRKKIETCEVIKCGMSLVYVPEDDD 1148

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794743|ref|XP_002865256.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297311091|gb|EFH41515.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  235 bits (599), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 187/545 (34%), Positives = 261/545 (47%), Gaps = 106/545 (19%)

Query: 2    LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE 61
            LV L + HS +K LW+  +    L+ L++SHS+ L  +  L  A N+E L    CTSL++
Sbjct: 506  LVDLNLRHSHLKTLWEEEKNTAELRWLDISHSKDLLSLSGLLDARNIERLNAECCTSLIK 565

Query: 62   THSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLM-------------- 107
              SSI+ ++ L+ LN   C SL SL   I L+SLK+LILSGCS L               
Sbjct: 566  C-SSIRQMDSLVYLNFRECTSLKSLPKGISLKSLKSLILSGCSKLRTFPTISENIESLYL 624

Query: 108  ------KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL 161
                  ++P SI+ L  L +LNL+ C +L  LPS +CK+KSL+ L LSGCS L+  P   
Sbjct: 625  DGTAIKRVPESIDSLRYLAVLNLKKCCKLRHLPSNLCKMKSLQELILSGCSKLKCFPEID 684

Query: 162  GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK---------------------- 199
             ++E L+ L  +  AI+++P  + C+ NL   +F   K                      
Sbjct: 685  EDMEHLEILLMDDTAIKQIPIKM-CMSNLKMFTFGGSKFQGSTGYELLPFSGCSHLSDLY 743

Query: 200  -------ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELP 252
                   +LP     LSS+  L L +NN E +PESI  L HL  L + +C +L SLP LP
Sbjct: 744  LTDCNLHKLPNNFSCLSSVHSLCLSRNNLEYLPESIKILHHLKSLDLKHCRKLNSLPVLP 803

Query: 253  CDLSDIEAHCCSSLEALSG------LSILFTQTSWNSQCFDFQ---------HCEV---- 293
             +L  ++AH C+SLE ++       L+     T   + CF            H ++    
Sbjct: 804  SNLQYLDAHDCASLETVANPMTHLVLAERVQSTFLFTDCFKLNREAQENIVAHAQLKSQI 863

Query: 294  ----------------PRGMICFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALC 337
                            P   + FPGS+LP WF  Q MG S    LP       F G +LC
Sbjct: 864  LANACLKRNHKGLVLEPLASVSFPGSDLPLWFRNQRMGTSIDTHLPPHWCDSKFRGLSLC 923

Query: 338  AVVAFRDHHDGGGSFHVCCESILKTEDG---LFQVTDGRMTGWFD--GSPG--PRYIGSD 390
             VV+F+D+ D    F V C+   K+E G    F  T G   GW    GS G   R +GSD
Sbjct: 924  VVVSFKDYEDQTSRFSVICKCKFKSESGDCIRFICTLG---GWNKLCGSSGHQSRKLGSD 980

Query: 391  HVFLGFDFNMF------SDGLDEYYCSDEVF-IQFYLED--RRCVDFCEVTKCGIHLLYA 441
            HVFL ++ N F       DG D   C +     +F++ D  +R +   EV KCG+ LLYA
Sbjct: 981  HVFLSYN-NCFHVKKFREDGNDNNRCCNTAASFKFFVTDDSKRKLGSFEVVKCGMGLLYA 1039

Query: 442  RDFAD 446
             D +D
Sbjct: 1040 PDESD 1044

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 177/519 (34%), Positives = 263/519 (50%), Gaps = 82/519 (15%)

Query: 1    NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            N+V L  P S I++LW GVQ LV+L+ ++LS S +L +IPDLS+A N+ES+  + C SL+
Sbjct: 615  NIVELIFPDSKIEKLWTGVQDLVHLRRMDLSGSPYLLEIPDLSMAENIESINLKFCKSLI 674

Query: 61   ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTL------------ILSG------ 102
            E + SIQYL KL VL L +C +L SL + I  + L+ L             +SG      
Sbjct: 675  EVNPSIQYLTKLEVLQLSYCDNLRSLPSRIGSKVLRILDLYHCINVRICPAISGNSPVLR 734

Query: 103  ------CSNLMK--------------------LPSSIERLSSLILLNLRNCSRLEGLPSK 136
                  C+N+ K                    +PSSIE L++L+ L + NC +L  +PS 
Sbjct: 735  KVDLQFCANITKFPEISGNIKYLYLQGTAIEEVPSSIEFLTALVRLYMTNCKQLSSIPSS 794

Query: 137  ICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLG--RLS 194
            ICKLKSLE L LSGCS L+  P  +  +E+L+ L+ +  AI+E+PSSI  LK L   +L 
Sbjct: 795  ICKLKSLEVLGLSGCSKLENFPEIMEPMESLRRLELDATAIKELPSSIKYLKFLTQLKLG 854

Query: 195  FESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCD 254
              + +EL   + QL SL  L L     + +P SI  L  L  L +S    +K LPELP  
Sbjct: 855  VTAIEELSSSIAQLKSLTHLDLGGTAIKELPSSIEHLKCLKHLDLSGT-GIKELPELPSS 913

Query: 255  LSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQ--------HCEVPRG-------MIC 299
            L+ ++ + C SL+ LS  ++   Q    + CF            C++  G        I 
Sbjct: 914  LTALDVNDCKSLQTLSRFNLRNFQELNFANCFKLDQKKLMADVQCKIQSGEIKGEIFQIV 973

Query: 300  FPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALCAVVAFRDH-HDGGGSFHVCCES 358
             P SE+P WF  Q+MG+S   KLPL+C  +   G A C V A          +F   C++
Sbjct: 974  LPKSEIPPWFRGQNMGSSVTKKLPLNC--HQIKGIAFCIVFASPTPLLSDCANFSCKCDA 1031

Query: 359  ILKTEDGLFQVTDGRMTGWFDGSPGPRYI-----GSDHVFLGFDFNMFSDGLDEYYCSDE 413
              K+++G     D     W+D  P P+        SDH+ L ++      GL   Y   E
Sbjct: 1032 --KSDNGEH---DHVNLLWYDLDPQPKAAVFKLDDSDHMLLWYEST--RTGLTSEYSGSE 1084

Query: 414  VFIQFYLEDRRCVDFCEVTKCGIHLLYARDFADS-TEDS 451
            V  +FY  D+  ++  ++ +CG++ L+ ++ + S  EDS
Sbjct: 1085 VTFEFY--DK--IEHSKIKRCGVYFLFDKNRSSSCDEDS 1119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242338|ref|NP_199336.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana] gi|9759608|dbj|BAB11396.1| disease resistance protein RPS4 [Arabidopsis thaliana] gi|332007836|gb|AED95219.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]

 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 172/534 (32%), Positives = 251/534 (47%), Gaps = 88/534 (16%)

Query: 1    NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            NL+ L +P+S+I  LW   +   NLK ++LSHS +L  +  LS A NL  L   GCTSL 
Sbjct: 636  NLIDLRLPYSNITTLWSCTKVAPNLKWVDLSHSSNLNSLMGLSEAPNLLRLNLEGCTSLK 695

Query: 61   ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMK------------ 108
            E    ++ +  L+ LNL  C SL SL   I   SLKTLILSGCS+               
Sbjct: 696  ELPDEMKDMTNLVFLNLRGCTSLLSLP-KITTNSLKTLILSGCSSFQTFEVISEHLESLY 754

Query: 109  --------LPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160
                    LP +I  L  LI LNL++C  L  LP  + +LKSL+ L LS CS L+  P+ 
Sbjct: 755  LNGTEINGLPPAIGNLHRLIFLNLKDCKNLATLPDCLGELKSLQELKLSRCSKLKIFPDV 814

Query: 161  LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNN 220
               +E+L  L  +G +I E+P SI  L +L RL          CL +  ++R L  D  +
Sbjct: 815  TAKMESLLVLLLDGTSIAELPCSIFHLSSLRRL----------CLSRNDNIRTLRFDMGH 864

Query: 221  FERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTS 280
                      + HL WL + YC+ L SLP LP +L  + AH C+SL  ++    L T T 
Sbjct: 865  ----------MFHLKWLELKYCKNLTSLPILPPNLQCLNAHGCTSLRTVASPQTLPTPTE 914

Query: 281  WNSQCFDFQHC----EVPRGMI----------------------------CFPGSELPEW 308
                 F F +C    +V +  I                            CFPG E+P W
Sbjct: 915  QIHSTFIFTNCHELEQVSKNAIISYVQKKSKLMSADRYSPDFVYKSLIGTCFPGCEIPAW 974

Query: 309  FMFQSMGASAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGGGSFHVCCESILKTEDGLFQ 368
            F  Q++G+  I +LP    S   +G ALC VV+F+++ D   S  V C     T   L Q
Sbjct: 975  FNHQALGSVLILELPQAWNSSRIIGIALCVVVSFKEYRDQNSSLQVQCTCEF-TNVSLSQ 1033

Query: 369  VTDGRMTGWFDGSPGPRYIGSDHVFLGFDFNMFSDGLDEYYCSDEVFIQFYLEDRRC-VD 427
             +   + GW +       + SDH+F+G+   +      ++  + E+ ++F + +    V+
Sbjct: 1034 ES-FMVGGWSEQGDETHTVESDHIFIGYTTLLNIKNRQQFPLATEISLRFQVTNGTSEVE 1092

Query: 428  FCEVTKCGIHLLYARDFADST------------EDSVWNFSSDEEEELPLLLPT 469
             C+V KCG  L+Y  + ADST            +D   +F + E ++ P+  PT
Sbjct: 1093 KCKVIKCGFSLVYEPNEADSTSWKETPRMEDNRQDRRISFKTGEGDDCPIATPT 1146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256011|ref|NP_193686.5| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana] gi|332658792|gb|AEE84192.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]

 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 189/543 (34%), Positives = 264/543 (48%), Gaps = 100/543 (18%)

Query: 2    LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE 61
            LV L + +S IKQLW+  +   +L+ ++L  S+ L  +  LS A NLE L   GCTSL +
Sbjct: 613  LVDLSLRYSHIKQLWEDEKNTESLRWVDLGQSKDLLNLSGLSRAKNLERLDLEGCTSL-D 671

Query: 62   THSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGC------------------ 103
               S++ +N+LI LNL  C SL SL     ++SLKTLILSGC                  
Sbjct: 672  LLGSVKQMNELIYLNLRDCTSLESLPKGFKIKSLKTLILSGCLKLKDFHIISESIESLHL 731

Query: 104  --SNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL 161
              + + ++   IE L SLILLNL+NC +L+ LP+ + KLKSL+ L LSGCS L+ LP   
Sbjct: 732  EGTAIERVVEHIESLHSLILLNLKNCEKLKYLPNDLYKLKSLQELVLSGCSALESLPPIK 791

Query: 162  GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSF------------------ESF----- 198
              +E L+ L  +G +I++ P  + CL NL   SF                   SF     
Sbjct: 792  EKMECLEILLMDGTSIKQTP-EMSCLSNLKICSFCRPVIDDSTGLVVLPFSGNSFLSDLY 850

Query: 199  ------KELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELP 252
                   +LP+    L SLR L L +NN E +PESI  L  L  L + +C RLKSLP LP
Sbjct: 851  LTNCNIDKLPDKFSSLRSLRCLCLSRNNIETLPESIEKLYSLLLLDLKHCCRLKSLPLLP 910

Query: 253  CDLSDIEAHCCSSLEALSG-LSI-LFTQ----TSWNSQCFDFQHCEV------------- 293
             +L  ++AH C SLE +S  L+I L T+    T   + CF     E              
Sbjct: 911  SNLQYLDAHGCGSLENVSKPLTIPLVTERMHTTFIFTDCFKLNQAEKEDIVAQAQLKSQL 970

Query: 294  ----------------PRGMICFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALC 337
                            P   +CFPG ++P WF  Q MG+     L     +  F+G +LC
Sbjct: 971  LARTSRHHNHKGLLLDPLVAVCFPGHDIPSWFSHQKMGSLIETDLLPHWCNSKFIGASLC 1030

Query: 338  AVVAFRDHHD-GGGSFHVCCESILKTEDGLFQVTDGRMTGWFD--GSP--GPRYIGSDHV 392
             VV F+DH         V C+S  K+++G F      + GW +  GS    PR +GSDHV
Sbjct: 1031 VVVTFKDHEGHHANRLSVRCKSKFKSQNGQFISFSFCLGGWNESCGSSCHEPRKLGSDHV 1090

Query: 393  FLGFD------FNMFSDGLDEYYCS-DEVFIQFYLED--RRCVDFCEVTKCGIHLLYARD 443
            F+ ++      F    +  +   C       +FYL D   R ++ CE+ +CG++ LYARD
Sbjct: 1091 FISYNNCNVPVFKWSEETNEGNRCHPTSASFEFYLTDETERKLECCEILRCGMNFLYARD 1150

Query: 444  FAD 446
              D
Sbjct: 1151 END 1153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227438287|gb|ACP30633.1| disease resistance protein [Brassica rapa subsp. pekinensis]

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 175/545 (32%), Positives = 251/545 (46%), Gaps = 113/545 (20%)

Query: 1    NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            NLV L++PHS ++++W   +    LK ++LSHS +L ++  L+ A NLE L   GCTSL 
Sbjct: 611  NLVDLKLPHSELEEIWGDDKVAGMLKWVDLSHSSNLCRLLGLAKAHNLERLNLEGCTSLK 670

Query: 61   ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMK------------ 108
               SSI  L KL+ LNL  C SL SL      +SL+TLILSGCS+L K            
Sbjct: 671  MLPSSINCLEKLVYLNLRECTSLKSLPEETKSQSLQTLILSGCSSLKKFPLISESIEVLL 730

Query: 109  --------LPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160
                    LP SIE  S L  LNL+NC RL+ L S + KLK L+ L LSGCS L+  P  
Sbjct: 731  LDGTAIKSLPDSIETSSKLASLNLKNCKRLKHLSSNLYKLKCLQELILSGCSQLEVFPEI 790

Query: 161  LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLS-SLRILFLD-- 217
              ++E+L+ L  +  +I E+P       N+  LS  + K    C      S+R+LFL   
Sbjct: 791  KEDMESLEILLLDDTSITEMP-------NMKHLS--NIKTFSLCGTNCEVSVRVLFLSPP 841

Query: 218  ------------------------------------KNNFERIPESIICLSHLYWLRISY 241
                                                 N+ E +PES   L +L W  + Y
Sbjct: 842  LGCSRLTDLYLSRCSLYRIPNISGNGLSSLQSLCLSGNSIENLPESFNQLHNLKWFDLKY 901

Query: 242  CERLKSLPELPCDLSDIEAHCCSSLEALS------------------------------- 270
            C+ LKSLP LP +L  ++AH C SLE L+                               
Sbjct: 902  CKNLKSLPVLPQNLQYLDAHECESLETLANPLTPLTVRERIHSMFMFSNCYKLNQDAQES 961

Query: 271  --GLSILFTQTSWNSQCFDFQHCEVPRGMI--CFPGSELPEWFMFQSMGASAIFKLPLDC 326
              G + + +Q   N+    +    +P  ++  CFP +E+P WF +Q +G S    LP   
Sbjct: 962  LVGHARIKSQLMANASVKRYYRGFIPEPLVGVCFPATEIPSWFFYQRLGRSLDISLPPHW 1021

Query: 327  FSYNFVGFALCAVVAFRDHHDGGGSFHVCCESILKTEDGLFQVTDGRMTGWFDG----SP 382
               NFVG A   VV+F+++ D    F V      + +DG F   +  + GW +       
Sbjct: 1022 CDTNFVGLAFSVVVSFKEYEDCAKRFSVKFSGKFEDQDGSFTRFNFTLAGWNEPCGTLRH 1081

Query: 383  GPRYIGSDHVFLGFD--FNMFS-DGLDEYYCSDEVFIQFYLED---RRCVDFCEVTKCGI 436
             PR + SDHVF+G++  F +    G     C  +   +FY  D   ++ ++ CEV KCG+
Sbjct: 1082 EPRKLTSDHVFMGYNSCFQVKKLHGESNSCCYTKASFKFYATDDEKKKKLEMCEVIKCGM 1141

Query: 437  HLLYA 441
             L+Y 
Sbjct: 1142 SLVYV 1146

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	492
TAIR|locus:2122985	1167	AT4G19530 [Arabidopsis thalian	0.741	0.312	0.323	1.4e-40
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.573	0.235	0.355	2.4e-37
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.581	0.232	0.372	2.3e-36
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.528	0.222	0.358	4.4e-33
TAIR|locus:2158475	1217	RPS4 "RESISTANT TO P. SYRINGAE	0.575	0.232	0.333	7.7e-33
TAIR|locus:2153207	1165	AT5G45060 [Arabidopsis thalian	0.867	0.366	0.300	3.1e-32
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.644	0.260	0.331	5.5e-31
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.585	0.222	0.331	9e-31
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.581	0.242	0.339	9.9e-31
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.497	0.205	0.358	2.7e-30

TAIR|locus:2122985 AT4G19530 [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 1.4e-40, P = 1.4e-40
 Identities = 130/402 (32%), Positives = 198/402 (49%)

Query:     1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
             NLV L++P+S I+Q+W+  +    L+ ++L+HS  L  +  LS A NLE L   GCT+L 
Sbjct:   643 NLVDLKLPYSKIRQIWREEKDAPKLRWVDLNHSSKLENLSGLSQALNLERLNLEGCTALK 702

Query:    61 ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKXXXXXXXXXXXX 120
                   + +  L+ LNL+ C  L SL   I+L SLKTLILS CSNL +            
Sbjct:   703 TLLLGPENMASLVFLNLKGCTGLESLP-KINLRSLKTLILSNCSNLEEFWVISETLYTLY 761

Query:   121 XXXXXXXXXXEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGI----A 176
                         LP  + KL SL +L +  C  L +LP E   L+ L+EL   G     +
Sbjct:   762 LDGTAIKT----LPQDMVKLTSLVKLYMKDCEMLVKLPEEFDKLKVLQELVCSGCKRLSS 817

Query:   177 IREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNN-FERIPESIICLSHLY 235
             + +V  ++ CL+ L  L   +  ++P     +SSL  L L +N     +   I  LS L 
Sbjct:   818 LPDVMKNMQCLQIL-LLDGTAITKIPH----ISSLERLCLSRNEKISCLSNDIRLLSQLK 872

Query:   236 WLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCE--- 292
             WL + YC +L S+PELP +L  ++A+ C SL  ++        T      F F +C+   
Sbjct:   873 WLDLKYCTKLVSIPELPTNLQCLDANGCESLTTVANPLATHLPTEQIHSTFIFTNCDKLD 932

Query:   293 -------VPRGMI--CFPGSELPEWFMFQSMGASAIFKLPL-DCFSYN-FVGFALCAVV- 340
                    VP  +   CFPG E+P WF  +++G+  + KL L   ++ N FVG ALCAVV 
Sbjct:   933 RTAKEGFVPEALFSTCFPGCEVPSWFCHEAVGS--VLKLNLLPHWNENRFVGIALCAVVG 990

Query:   341 AFRDHHDGGGSFHVCCESILKTEDGL----FQVTDGRMTG-W 377
             +  +  +   S  V C   + ++D      ++++  R+ G W
Sbjct:   991 SLPNCQEQTNSCSVTCTFNIASKDSKKGDPYKISFDRLVGRW 1032

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 105/295 (35%), Positives = 156/295 (52%)

Query:     1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
             NLV L++P+S I+++W+  +    LK +NL+HS+ L  +  L  A NL+ L   GCT+L 
Sbjct:   638 NLVDLKLPYSEIERVWEDNKDAPKLKWVNLNHSKKLNTLAGLGKAQNLQELNLEGCTALK 697

Query:    61 ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKXXXXXXXXXXXX 120
             E H  ++ +  L+ LNL  C SL SL   I L SLKTLILSGCS   K            
Sbjct:   698 EMHVDMENMKFLVFLNLRGCTSLKSLP-EIQLISLKTLILSGCS---KFKTFQVISDKLE 753

Query:   121 XXXXXXXXXXEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIA-IRE 179
                       E LP  I +L+ L  LN+ GC  L+RLP+ LG L+AL+EL   G + + E
Sbjct:   754 ALYLDGTAIKE-LPCDIGRLQRLVMLNMKGCKKLKRLPDSLGQLKALEELILSGCSKLNE 812

Query:   180 VPSSIVCLKNLGRLSFE--SFKELPECLGQLSSLRILFLDKNN-FERIPESIICLSHLYW 236
              P +   +  L  L  +  + K++P+ L    S+R L L+KN    R+P+ +   S L W
Sbjct:   813 FPETWGNMSRLEILLLDETAIKDMPKIL----SVRRLCLNKNEKISRLPDLLNKFSQLQW 868

Query:   237 LRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHC 291
             L + YC+ L  +P+LP +L  +  H CSSL+ ++   +        +  F F +C
Sbjct:   869 LHLKYCKNLTHVPQLPPNLQYLNVHGCSSLKTVAKPLVCSIPMKHVNSSFIFTNC 923

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 2.3e-36, P = 2.3e-36
 Identities = 110/295 (37%), Positives = 148/295 (50%)

Query:     1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
             NL+ L +P+S+I  LW   +   NLK ++LSHS +L  +  LS A NL  L   GCTSL 
Sbjct:   636 NLIDLRLPYSNITTLWSCTKVAPNLKWVDLSHSSNLNSLMGLSEAPNLLRLNLEGCTSLK 695

Query:    61 ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKXXXXXXXXXXXX 120
             E    ++ +  L+ LNL  C SL SL   I   SLKTLILSGCS+               
Sbjct:   696 ELPDEMKDMTNLVFLNLRGCTSLLSLP-KITTNSLKTLILSGCSSFQ----TFEVISEHL 750

Query:   121 XXXXXXXXXXEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIA-IRE 179
                        GLP  I  L  L  LNL  C NL  LP+ LG L++L+ELK    + ++ 
Sbjct:   751 ESLYLNGTEINGLPPAIGNLHRLIFLNLKDCKNLATLPDCLGELKSLQELKLSRCSKLKI 810

Query:   180 VPSSIVCLKNLGRLSFE--SFKELPECLGQLSSLRILFLDKN-NFERIPESIICLSHLYW 236
              P     +++L  L  +  S  ELP  +  LSSLR L L +N N   +   +  + HL W
Sbjct:   811 FPDVTAKMESLLVLLLDGTSIAELPCSIFHLSSLRRLCLSRNDNIRTLRFDMGHMFHLKW 870

Query:   237 LRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHC 291
             L + YC+ L SLP LP +L  + AH C+SL  ++    L T T      F F +C
Sbjct:   871 LELKYCKNLTSLPILPPNLQCLNAHGCTSLRTVASPQTLPTPTEQIHSTFIFTNC 925

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 4.4e-33, P = 4.4e-33
 Identities = 98/273 (35%), Positives = 145/273 (53%)

Query:     1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
             NLV LE+P+SSIK++W+GV+    LK  NLS+S  LT +  LS A NLE L   GCTSLL
Sbjct:   679 NLVDLELPYSSIKKVWEGVKDTPILKWANLSYSSKLTNLLGLSNAKNLERLNLEGCTSLL 738

Query:    61 ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKXXXXXXXXXXXX 120
             +    ++ +  L+ LN+  C SLT L  SI + SLK LILS CS L +            
Sbjct:   739 KLPQEMENMKSLVFLNMRRCTSLTCLQ-SIKVSSLKILILSDCSKLEEFEVISENLEELY 797

Query:   121 XXXXXXXXXXEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIA-IRE 179
                       +GLP     L  L  LN+ GC+ L+ LP  LG  +AL+EL   G + +  
Sbjct:   798 LDGTAI----KGLPPAAGDLTRLVVLNMEGCTELESLPKRLGKQKALQELVLSGCSKLES 853

Query:   180 VPSSIVCLKNLGRLSFES--FKELPECLGQLSSLRILFLDKN-NFERIPESIICLSHLYW 236
             VP+ +  +K+L  L  +    +++P+    + SL+ L L +N     + +++   S+L  
Sbjct:   854 VPTDVKDMKHLRLLLLDGTRIRKIPK----IKSLKCLCLSRNIAMVNLQDNLKDFSNLKC 909

Query:   237 LRISYCERLKSLPELPCDLSDIEAHCCSSLEAL 269
             L +  CE L+ LP LP  L  +  + C  LE++
Sbjct:   910 LVMKNCENLRYLPSLPKCLEYLNVYGCERLESV 942

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

TAIR|locus:2158475 RPS4 "RESISTANT TO P. SYRINGAE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 7.7e-33, P = 7.7e-33
 Identities = 98/294 (33%), Positives = 149/294 (50%)

Query:     1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
             NLV L++P+S ++QLW+G +    L+ ++L+HS  L  +  LS A  L+ L   GCT+L 
Sbjct:   638 NLVDLKLPYSEMEQLWEGDKDTPCLRWVDLNHSSKLCSLSGLSKAEKLQRLNLEGCTTLK 697

Query:    61 ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKXXXXXXXXXXXX 120
                  ++ +  L  LNL+ C SL SL   ++L SLKTL LSGCS   +            
Sbjct:   698 AFPHDMKKMKMLAFLNLKGCTSLESLP-EMNLISLKTLTLSGCSTFKEFPLISDNIETLY 756

Query:   121 XXXXXXXXXXEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKEL-KAEGIAIRE 179
                         LP  + KL+ L  LN+  C  L+ +P  +G L+AL+EL  ++ + ++ 
Sbjct:   757 LDGTAISQ----LPMNMEKLQRLVVLNMKDCKMLEEIPGRVGELKALQELILSDCLNLKI 812

Query:   180 VPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKN-NFERIPESIICLSHLYWLR 238
              P   +   N+  L   + + +P    QL S++ L L +N     +P  I  LS L WL 
Sbjct:   813 FPEIDISFLNILLLDGTAIEVMP----QLPSVQYLCLSRNAKISCLPVGISQLSQLKWLD 868

Query:   239 ISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCE 292
             + YC  L S+PE P +L  ++AH CSSL+ +S        T  N   F F +CE
Sbjct:   869 LKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTEQNHSTFIFTNCE 922

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0004872 "receptor activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0012505 "endomembrane system" evidence=IDA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 3.1e-32, P = 3.1e-32
 Identities = 140/466 (30%), Positives = 212/466 (45%)

Query:     1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
             NLV L++P+S I++LW GV+    LK ++L+HS  L  +  LS A NL+ L   GCTSL 
Sbjct:   638 NLVDLKLPYSEIERLWDGVKDTPVLKWVDLNHSSKLCSLSGLSKAQNLQRLNLEGCTSL- 696

Query:    61 ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKXXXXXXXXXXXX 120
             E+   +  L  L  L L +C +       +  E+LK L L G S + +            
Sbjct:   697 ESLRDVN-LTSLKTLTLSNCSNFKEFP--LIPENLKALYLDGTS-ISQLPDNVGNLKRLV 752

Query:   121 XXXXXXXXXXEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV 180
                       E +P+ + +LK+L++L LSGCS L+  P E+ N  +LK L  +G +I+ +
Sbjct:   753 LLNMKDCKVLETIPTCVSELKTLQKLVLSGCSKLKEFP-EI-NKSSLKILLLDGTSIKTM 810

Query:   181 PS--SI--VCLKNLGRLSFESFKELPECLGQLSSLRILFLDK-NNFERIPESIICLSHLY 235
             P   S+  +CL     L +     LP  + Q+S L  L L        +PE       L 
Sbjct:   811 PQLPSVQYLCLSRNDHLIY-----LPAGINQVSQLTRLDLKYCTKLTYVPE---LPPTLQ 862

Query:   236 WLRISYCERLKSLPE-LPCDLSDIEAHC------CSSLEALSGLSIL-FTQTSWNSQCFD 287
             +L    C  LK++ + L   +S ++ H       C +LE  +   I  + Q         
Sbjct:   863 YLDAHGCSSLKNVAKPLARIMSTVQNHYTFNFTNCGNLEQAAKEEITSYAQRKCQLLSDA 922

Query:   288 FQHC-EVPRGMI--CFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALCAVVAFRD 344
              +H  E    +   CFPG E+P WF  +++G+    KL          G ALCAVV+F D
Sbjct:   923 RKHYNEGSEALFSTCFPGCEVPSWFGHEAVGSLLQRKLLPHWHDKRLSGIALCAVVSFPD 982

Query:   345 HHDGGGSFHVCCESILKTEDGLFQVTDGRMTGWF-DGSPGPRYIGSDHVFLGFDFNMFSD 403
               D    F V C   +K ED  +      +  W  +G+   R I SDHVF+ +  +  S 
Sbjct:   983 SQDQLSCFSVTCTFKIKAEDKSWVPFTCPVGIWTREGNKKDR-IESDHVFIAYISSPHSI 1041

Query:   404 GLDEYYCSD-----EVFIQFYL-EDRRCVDFCEVTKCGIHLLYARD 443
                E   SD     E  ++F +  D   +   +V KCG+ L+Y  D
Sbjct:  1042 RCLEEKNSDKCNFSEASLEFTVTSDTSGIGVFKVLKCGLSLVYEND 1087

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 5.5e-31, Sum P(2) = 5.5e-31
 Identities = 114/344 (33%), Positives = 168/344 (48%)

Query:     2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE 61
             LV L M  S +++LW+G ++L NLK ++LS+SE L ++P+LS ATNLE L  R C+SL+E
Sbjct:   695 LVELHMSFSKLRKLWEGTKQLRNLKWMDLSNSEDLKELPNLSTATNLEELKLRDCSSLVE 754

Query:    62 THSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKXXXXXXXXXXXXX 121
               SSI+ L  L  L L+ C SL  L +  +   L+ L L  CS+L K             
Sbjct:   755 LPSSIEKLTSLQRLYLQRCSSLVELPSFGNATKLEELYLENCSSLEKLPPSINANNLQQL 814

Query:   122 XXXXXXXXXEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIA-IREV 180
                      E LP+ I    +L++L+L  CS+L  LP  +G    LKEL   G + + ++
Sbjct:   815 SLINCSRVVE-LPA-IENATNLQKLDLGNCSSLIELPLSIGTATNLKELNISGCSSLVKL 872

Query:   181 PSSIVCLKNLGRLSFESFKELPEC-----LGQLSSLRILFLDK-NNFERIPESII--C-- 230
             PSSI  + NL      +   L E      L  L +L +    +  +F  I   I   C  
Sbjct:   873 PSSIGDITNLKEFDLSNCSNLVELPININLKFLDTLNLAGCSQLKSFPEISTKIFTDCYQ 932

Query:   231 -LSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWN-SQCFDF 288
              +S L  LRI+ C  L SLP+LP  L+ + A  C SLE L        + S N  +CF  
Sbjct:   933 RMSRLRDLRINNCNNLVSLPQLPDSLAYLYADNCKSLERLD-CCFNNPEISLNFPKCFKL 991

Query:   289 QHCEVPRGMI----CF----PGSELPEWFMFQSMGASAIFKLPL 324
                +  R +I    C     PG+++P  F  ++    ++ K+ L
Sbjct:   992 N--QEARDLIMHTTCINATLPGTQVPACFNHRATSGDSL-KIKL 1032

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 9.0e-31, P = 9.0e-31
 Identities = 97/293 (33%), Positives = 145/293 (49%)

Query:     2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE 61
             LV L M +S++++LW G+Q L NLK ++LS  ++L ++PDLS ATNLE L    C SL+E
Sbjct:   604 LVELCMSNSNLEKLWDGIQPLRNLKKMDLSRCKYLVEVPDLSKATNLEELNLSYCQSLVE 663

Query:    62 THSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKXXXXXXXXXXXXX 121
                SI+ L  L    L +C  L  +   I L+SL+T+ +SGCS+L               
Sbjct:   664 VTPSIKNLKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSSLKHFPEISWNTRRLYL 723

Query:   122 XXXXXXXXXEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIA-IREV 180
                      E LPS I +L  L +L++S C  L+ LP+ LG+L +LK L  +G   +  +
Sbjct:   724 SSTKI----EELPSSISRLSCLVKLDMSDCQRLRTLPSYLGHLVSLKSLNLDGCRRLENL 779

Query:   181 PSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRIS 240
             P ++  L +L  L       + E     +S+ +L + + + E IP  I  LS L  L IS
Sbjct:   780 PDTLQNLTSLETLEVSGCLNVNEFPRVSTSIEVLRISETSIEEIPARICNLSQLRSLDIS 839

Query:   241 YCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEV 293
               +RL SLP    +L  +E    S    L    +   QT    + FD     +
Sbjct:   840 ENKRLASLPVSISELRSLEKLKLSGCSVLESFPLEICQTMSCLRWFDLDRTSI 892

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 9.9e-31, P = 9.9e-31
 Identities = 106/312 (33%), Positives = 153/312 (49%)

Query:     1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
             NL    +P+S I++LW+G +    LK ++LSHS  L  +  L  A +L+ L   GCTSL 
Sbjct:   630 NLTDFNLPYSEIEELWEGAKDTQKLKWVDLSHSRKLCNLSGLLNAESLQRLNLEGCTSLE 689

Query:    61 ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKXXXXXXXXXXXX 120
             E    ++ +  LI LN+  C SL  L   ++L SLKTLIL+ CS++ K            
Sbjct:   690 ELPREMKRMKSLIFLNMRGCTSLRVLPR-MNLISLKTLILTNCSSIQKFQVISDNLETLH 748

Query:   121 XXXXXXXXXXEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIA-IR- 178
                         LP+ + KL+ L  LNL  C  L  +P  LG L+AL+EL   G + ++ 
Sbjct:   749 LDGTAIGK----LPTDMVKLQKLIVLNLKDCKMLGAVPEFLGKLKALQELVLSGCSKLKT 804

Query:   179 -EVP-SSIVCLKNL---GR--------LSFESFK--ELPEC---LGQLSSLRILFLDKNN 220
               VP  ++ CL+ L   G         L F S +  +LPE    +  LSSLR L L +NN
Sbjct:   805 FSVPIETMKCLQILLLDGTALKEMPKLLRFNSSRVEDLPELRRGINGLSSLRRLCLSRNN 864

Query:   221 F-ERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQT 279
                 +   I  L HL WL + YC+ L S+P LP +L  ++AH C  L+ ++    L    
Sbjct:   865 MISNLQIDINQLYHLKWLDLKYCKNLTSIPLLPPNLEILDAHGCEKLKTVASPMALLKLM 924

Query:   280 SWNSQCFDFQHC 291
                   F F +C
Sbjct:   925 EQVQSKFIFTNC 936

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 2.7e-30, P = 2.7e-30
 Identities = 90/251 (35%), Positives = 132/251 (52%)

Query:     2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE 61
             LV L+M  S++++LW+G ++L NLK ++LS+S +L ++P+LS ATNLE L  R C+SL+E
Sbjct:   693 LVELDMRSSNLRKLWEGTKQLRNLKWMDLSYSSYLKELPNLSTATNLEELKLRNCSSLVE 752

Query:    62 THSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKXXXXXXXXXXXXX 121
               SSI+ L  L +L+LE+C SL  L    +   L+ L L  CS+L++             
Sbjct:   753 LPSSIEKLTSLQILDLENCSSLEKLPAIENATKLRELKLQNCSSLIELPLSIGTATNLKQ 812

Query:   122 XXXXXXXXXEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVP 181
                        LPS I  +  LE  +LS CS+L  LP+ +GNL+ L +L   G +  E  
Sbjct:   813 LNISGCSSLVKLPSSIGDITDLEVFDLSNCSSLVTLPSSIGNLQNLCKLIMRGCSKLEAL 872

Query:   182 SSIVCLKNLGRLSF---ESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR 238
                + LK+L  L+       K  PE    +S LR   L     + +P SI+  S L   +
Sbjct:   873 PININLKSLDTLNLTDCSQLKSFPEISTHISELR---LKGTAIKEVPLSIMSWSPLADFQ 929

Query:   239 ISYCERLKSLP 249
             ISY E L   P
Sbjct:   930 ISYFESLMEFP 940

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	492
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-39
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PRK15386	426	PRK15386, PRK15386, type III secretion protein Gog	6e-04

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  151 bits (384), Expect = 3e-39
 Identities = 128/421 (30%), Positives = 183/421 (43%), Gaps = 72/421 (17%)

Query: 1    NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            NLV L+M  S +++LW GV  L  L++++L  S++L +IPDLS+ATNLE+L    C+SL+
Sbjct: 612  NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV 671

Query: 61   ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLI 120
            E  SSIQYLNKL  L++  C +L  L T I+L+SL  L LSGCS L   P     +S L 
Sbjct: 672  ELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLD 731

Query: 121  L--------------------------------------------------LNLRNCSRL 130
            L                                                  L L +   L
Sbjct: 732  LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL 791

Query: 131  EGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIA-IREVPSSIVCLKN 189
              LPS I  L  LE L +  C NL+ LP  + NLE+L+ L   G + +R  P     + +
Sbjct: 792  VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISD 850

Query: 190  LGRLSFESFKELPECLGQLSSLRILFLDK-NNFERIPESIICLSHLYWLRISYCERLK-- 246
            L  LS    +E+P  + + S+L  L ++  NN +R+  +I  L HL  +  S C  L   
Sbjct: 851  L-NLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909

Query: 247  SLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPR-----GMICFP 301
            S    P +++    +  S L   S + I F        CF+     + +       +   
Sbjct: 910  SWNGSPSEVAMATDNIHSKLP--STVCINF------INCFNLDQEALLQQQSIFKQLILS 961

Query: 302  GSELPEWFMFQSMGASAI-FKLPLDCFSYNFVGFALCAVVAFR--DHHDGGGSFHVCCES 358
            G E+P +F  ++ GAS     L        F  F  CAVV               VCC  
Sbjct: 962  GEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRF 1021

Query: 359  I 359
            I
Sbjct: 1022 I 1022

syringae 6; Provisional. Length = 1153

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 9e-08
 Identities = 77/270 (28%), Positives = 117/270 (43%), Gaps = 74/270 (27%)

Query: 24  NLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSL 83
           +L++LNLS++     IP             RG    LET            L+L    S 
Sbjct: 119 SLRYLNLSNNNFTGSIP-------------RGSIPNLET------------LDL----SN 149

Query: 84  TSLSTSIHLE-----SLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKIC 138
             LS  I  +     SLK L L G   + K+P+S+  L+SL  L L +   +  +P ++ 
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209

Query: 139 KLKSLERL-----NLSG--------CSNLQRL-----------PNELGNLEALKEL---- 170
           ++KSL+ +     NLSG         ++L  L           P+ LGNL+ L+ L    
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269

Query: 171 -KAEGIAIREVPSSIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFE-RIP 225
            K  G     +P SI  L+ L  L         E+PE + QL +L IL L  NNF  +IP
Sbjct: 270 NKLSG----PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Query: 226 ESIICLSHLYWLRISYCERLKSLPELPCDL 255
            ++  L  L  L++ +  +     E+P +L
Sbjct: 326 VALTSLPRLQVLQL-WSNKFSG--EIPKNL 352

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 65/231 (28%), Positives = 101/231 (43%), Gaps = 33/231 (14%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDL-SLATNLESLTFRGCTSL 59
           NL  L++  + I+ L   ++ L NLK+L+LS +  L+ +P L S  +NL +L   G    
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNK-- 197

Query: 60  LETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSS 118
                                  ++ L   I  L +L+ L LS  +++++L SS+  L +
Sbjct: 198 -----------------------ISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLKN 233

Query: 119 LILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR 178
           L  L L N ++LE LP  I  L +LE L+LS   N     + LG+L  L+EL   G ++ 
Sbjct: 234 LSGLELSN-NKLEDLPESIGNLSNLETLDLSN--NQISSISSLGSLTNLRELDLSGNSLS 290

Query: 179 EVPSSIVCLKNLGRLSFESFKEL-PECLGQLSSLRILFLDKNNFERIPESI 228
                I  L  L  L       L    L   S L    +  N     PE++
Sbjct: 291 NALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEAL 341

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 58/201 (28%), Positives = 88/201 (43%), Gaps = 13/201 (6%)

Query: 88  TSIHLESLKTLILSGCSNLM---KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLE 144
              +LES+    L+   +      LPSS+ RL SL LL+    S L+G  + +  L  L 
Sbjct: 38  PDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLN-LLPLP 96

Query: 145 RLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLK-NLGRLSFE--SFKEL 201
            L+L+  + L+   +EL  L  L  L  +   I ++P  I  LK NL  L       + L
Sbjct: 97  SLDLN-LNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL 155

Query: 202 PECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYC--ERLKSLPELPCDLSDIE 259
           P  L  L +L+ L L  N+   +P+ +  LS+L  L +S      L    EL   L +++
Sbjct: 156 PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELD 215

Query: 260 A---HCCSSLEALSGLSILFT 277
                    L +LS L  L  
Sbjct: 216 LSNNSIIELLSSLSNLKNLSG 236

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 25/110 (22%)

Query: 122 LNLRNCSRLEG-LPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV 180
           L L N   L G +P+ I KL+ L+ +NLSG S    +P  LG++ +L+ L          
Sbjct: 423 LGLDN-QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD--------- 472

Query: 181 PSSIVCLKNLGRLSFESFK-ELPECLGQLSSLRILFLDKNNFE-RIPESI 228
                       LS+ SF   +PE LGQL+SLRIL L+ N+   R+P ++
Sbjct: 473 ------------LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 24/110 (21%)

Query: 70  NKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSR 129
           N+L  + +E+C +LT+L  SI  E L+ L +  C  +  LP S+  L     +       
Sbjct: 72  NELTEITIENCNNLTTLPGSIP-EGLEKLTVCHCPEISGLPESVRSLE----IKGSATDS 126

Query: 130 LEGLPSKICKLK------------------SLERLNLSGCSNLQRLPNEL 161
           ++ +P+ +  L                   SL+ L+L+GCSN+  LP +L
Sbjct: 127 IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKL 175

Length = 426

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	492
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.79
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.79
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.79
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.77
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.66
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.66
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.61
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.52
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.5
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.47
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.13
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.04
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.84
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.8
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.75
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.74
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.63
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.6
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.59
PLN03150	623	hypothetical protein; Provisional	98.48
PLN03150	623	hypothetical protein; Provisional	98.46
PRK15386	426	type III secretion protein GogB; Provisional	98.45
PRK15386	426	type III secretion protein GogB; Provisional	98.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.38
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.38
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.32
KOG4341	483	consensus F-box protein containing LRR [General fu	98.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.27
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.25
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.21
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.94
KOG4341	483	consensus F-box protein containing LRR [General fu	97.86
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.72
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.69
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.61
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.41
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.39
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.35
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.17
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.1
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.09
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.09
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.99
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.75
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.65
PF07725	20	LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le	96.58
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.51
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.48
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.47
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.5
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.71
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.62
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.62
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.17
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.25
smart00370	26	LRR Leucine-rich repeats, outliers.	88.93
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.93
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.07
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.55
KOG4308	478	consensus LRR-containing protein [Function unknown	85.43
KOG4308	478	consensus LRR-containing protein [Function unknown	85.16

>PLN03210 Resistant to P

Probab=100.00  E-value=1.1e-43  Score=408.33  Aligned_cols=429  Identities=31%  Similarity=0.442  Sum_probs=332.1

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|+|++|+++.+|.+++.+++|+.|+|+++..++.+|+++.+++|++|+|++|..+..+|.+++++++|+.|++++|
T Consensus       612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence            68999999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCcccccc-----------------------
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKI-----------------------  137 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i-----------------------  137 (492)
                      ..++.+|..+++++|+.|++++|..++.+|..   .++|++|++++|. +..+|..+                       
T Consensus       692 ~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~  767 (1153)
T PLN03210        692 ENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQ  767 (1153)
T ss_pred             CCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccccccccccccccccchhhcccccc
Confidence            99999999889999999999999888877753   3567788887765 33444321                       


Q ss_pred             -------CCCCCCCEEeccCCCCCCCcccccCCcccccccccccc-cccccccccccCCCCcccccCCCcCCccccCCCC
Q 043408          138 -------CKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGI-AIREVPSSIVCLKNLGRLSFESFKELPECLGQLS  209 (492)
Q Consensus       138 -------~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~  209 (492)
                             ...++|+.|++++|.....+|..++++++|+.|++++| .++.+|..+ .+++|+.|++++|..+.......+
T Consensus       768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~  846 (1153)
T PLN03210        768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIST  846 (1153)
T ss_pred             ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccccc
Confidence                   11357889999999889999999999999999999986 577888776 789999999999876543334457


Q ss_pred             CCcEEecCCCcccccchhhhcCccccccccccccccccCCCCC---cccceeecccccccccccccchh---hccCC---
Q 043408          210 SLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELP---CDLSDIEAHCCSSLEALSGLSIL---FTQTS---  280 (492)
Q Consensus       210 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~sL~~L~~~~C~~L~~l~~~~~~---~~~~~---  280 (492)
                      +|+.|+|++|.++.+|.++..+++|+.|++++|+.++.+|..+   .+|+.+++.+|.+|+.++.....   .....   
T Consensus       847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~  926 (1153)
T PLN03210        847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIH  926 (1153)
T ss_pred             ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhccccc
Confidence            8999999999999999999999999999999999999998754   56777899999999876532110   00000   


Q ss_pred             -C--CCceeecccc-CCCCC----------ceeCCCCCCCCceeccCCccEEE-EEcCCCCCCCccceEEEEEEEeecCC
Q 043408          281 -W--NSQCFDFQHC-EVPRG----------MICFPGSELPEWFMFQSMGASAI-FKLPLDCFSYNFVGFALCAVVAFRDH  345 (492)
Q Consensus       281 -~--~~~~~~~~~c-~l~~~----------~~~~pg~~iP~W~~~~~~g~~~~-i~l~~~~~~~~~~gf~~~~v~~~~~~  345 (492)
                       .  ......|.+| ++++.          .+++||.++|+||.||+.|++++ |.+|+.|+...+.||++|+|+++...
T Consensus       927 ~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~ 1006 (1153)
T PLN03210        927 SKLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESF 1006 (1153)
T ss_pred             ccCCchhccccccccCCCchhhhcccccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCcc
Confidence             0  0123468888 77642          46899999999999999999998 99999999888999999999998865


Q ss_pred             CCCCCcceeEEeeeecCC-CCeeeeeeCCccccccCCCCCCcCCCCeEEEEe-ecccccc--ccccccCCCcEEEEEEEe
Q 043408          346 HDGGGSFHVCCESILKTE-DGLFQVTDGRMTGWFDGSPGPRYIGSDHVFLGF-DFNMFSD--GLDEYYCSDEVFIQFYLE  421 (492)
Q Consensus       346 ~~~~~~~~~~c~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~~~~-~~~~~~~--~~~~~~~~~~~~~~f~~~  421 (492)
                      ......+.+.|.|++++. +..+......+.|..       ....+|+++|. ......+  ...+ ..+++|.|+|++.
T Consensus      1007 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~ 1078 (1153)
T PLN03210       1007 FIISVSFDIQVCCRFIDRLGNHFDSPYQPHVFSV-------TKKGSHLVIFDCCFPLNEDNAPLAE-LNYDHVDIQFRLT 1078 (1153)
T ss_pred             ccCCCceeEEEEEEEECCCCCccccCCCceeEee-------eccccceEEecccccccccccchhc-cCCceeeEEEEEe
Confidence            444456788899988763 322211111111111       12345665554 2100000  0111 1245688999887


Q ss_pred             cCccCCceEEEEeeeEEEeecCC
Q 043408          422 DRRCVDFCEVTKCGIHLLYARDF  444 (492)
Q Consensus       422 ~~~~~~~~~v~~cGv~~~y~~~~  444 (492)
                      +..  ..++|++||||++|+.+.
T Consensus      1079 ~~~--~~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210       1079 NKN--SQLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred             cCC--CCeEEEeeeEEEeccCCC
Confidence            643  237999999999995544

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=7.1e-26  Score=259.26  Aligned_cols=262  Identities=25%  Similarity=0.327  Sum_probs=167.9

Q ss_pred             ceEEEccCCCcc-ccccccc-CCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccC
Q 043408            2 LVSLEMPHSSIK-QLWKGVQ-RLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH   79 (492)
Q Consensus         2 L~~L~L~~s~i~-~l~~~~~-~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~   79 (492)
                      |+.|+|++|++. .+|.++. .+++|++|+|++|.+...+|. +.+++|++|+|++|.....+|..++.+++|++|++++
T Consensus        95 L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  173 (968)
T PLN00113         95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG  173 (968)
T ss_pred             CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc
Confidence            455555555554 4554333 556666666666555444443 3456666666666655556666666777777777776


Q ss_pred             CCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcc
Q 043408           80 CRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP  158 (492)
Q Consensus        80 ~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp  158 (492)
                      |.....+|..+ ++++|++|++++|.....+|..++++++|++|+|++|...+.+|..++++++|++|++++|...+.+|
T Consensus       174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  253 (968)
T PLN00113        174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP  253 (968)
T ss_pred             CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence            66545555544 66777777777766656666667777777777777776666667667777777777777766666666


Q ss_pred             cccCCccccccccccccccc-ccccccccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCccc-ccchhhhcCcc
Q 043408          159 NELGNLEALKELKAEGIAIR-EVPSSIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFE-RIPESIICLSH  233 (492)
Q Consensus       159 ~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~  233 (492)
                      ..++++++|+.|++++|.+. .+|..+..+++|+.|++++|.   .+|..+..+++|+.|++++|.++ .+|..+..+++
T Consensus       254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  333 (968)
T PLN00113        254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR  333 (968)
T ss_pred             hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC
Confidence            66777777777777777665 456666667777777776664   35666666777777777777765 55666677777


Q ss_pred             ccccccccccccccCCCC---Ccccceeeccccc
Q 043408          234 LYWLRISYCERLKSLPEL---PCDLSDIEAHCCS  264 (492)
Q Consensus       234 L~~L~L~~c~~l~~lp~l---~~sL~~L~~~~C~  264 (492)
                      |+.|++++|...+.+|..   ..+|+.|++.++.
T Consensus       334 L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            777777776655555542   3456666666553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=2.7e-25  Score=254.51  Aligned_cols=247  Identities=24%  Similarity=0.308  Sum_probs=143.7

Q ss_pred             CceEEEccCCCccc-ccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            1 NLVSLEMPHSSIKQ-LWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         1 nL~~L~L~~s~i~~-l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      +|++|+|++|++.. +|.  ..+++|++|+|++|.+...+|. ++.+++|++|+|++|.....+|..++++++|++|+++
T Consensus       119 ~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  196 (968)
T PLN00113        119 SLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA  196 (968)
T ss_pred             CCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence            46667777766652 332  3456666666666665555553 6666666666666665555666666666666666666


Q ss_pred             CCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCc
Q 043408           79 HCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRL  157 (492)
Q Consensus        79 ~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l  157 (492)
                      +|.....+|..+ ++++|++|++++|.....+|..++++++|++|++++|...+.+|..++++++|++|++++|...+.+
T Consensus       197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  276 (968)
T PLN00113        197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI  276 (968)
T ss_pred             CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence            665444455444 5666666666665555556666666666666666666555556666666666666666665555555


Q ss_pred             ccccCCccccccccccccccc-ccccccccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCccc-ccchhhhcCc
Q 043408          158 PNELGNLEALKELKAEGIAIR-EVPSSIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFE-RIPESIICLS  232 (492)
Q Consensus       158 p~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~  232 (492)
                      |..+.++++|+.|++++|.+. .+|..+..+++|+.|++.+|.   .+|..+..+++|+.|++++|.+. .+|..+..++
T Consensus       277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~  356 (968)
T PLN00113        277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN  356 (968)
T ss_pred             chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC
Confidence            555556666666666666554 445555555566666555543   24445555555555555555554 4555555555


Q ss_pred             cccccccccccccccCC
Q 043408          233 HLYWLRISYCERLKSLP  249 (492)
Q Consensus       233 ~L~~L~L~~c~~l~~lp  249 (492)
                      +|+.|++++|+....+|
T Consensus       357 ~L~~L~Ls~n~l~~~~p  373 (968)
T PLN00113        357 NLTVLDLSTNNLTGEIP  373 (968)
T ss_pred             CCcEEECCCCeeEeeCC
Confidence            55555555554433333

>PLN03210 Resistant to P

Probab=99.92  E-value=3e-23  Score=239.44  Aligned_cols=243  Identities=33%  Similarity=0.498  Sum_probs=184.8

Q ss_pred             CceEEEccCCCc------c-cccccccCCC-CCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCC
Q 043408            1 NLVSLEMPHSSI------K-QLWKGVQRLV-NLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKL   72 (492)
Q Consensus         1 nL~~L~L~~s~i------~-~l~~~~~~l~-~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L   72 (492)
                      +|+.|.+.++..      . .+|.++..++ +|+.|.+.++.. +.+|.-....+|++|+|.+| .+..++..+..+++|
T Consensus       559 ~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f~~~~L~~L~L~~s-~l~~L~~~~~~l~~L  636 (1153)
T PLN03210        559 NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNFRPENLVKLQMQGS-KLEKLWDGVHSLTGL  636 (1153)
T ss_pred             cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcCCccCCcEEECcCc-cccccccccccCCCC
Confidence            456666654432      1 4566666654 588888887654 45565346789999999985 477788888899999


Q ss_pred             cEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCC
Q 043408           73 IVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCS  152 (492)
Q Consensus        73 ~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~  152 (492)
                      +.|+|++|..++.+|....+++|++|++++|..+..+|..++++++|+.|++++|..++.+|..+ ++++|+.|++++|.
T Consensus       637 k~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        637 RNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             CEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence            99999998888888876689999999999999999999999999999999999999999998876 78999999999998


Q ss_pred             CCCCcccccCCcccccccccccccccccccccccCC-------------------------------CCcccccCCCc--
Q 043408          153 NLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLK-------------------------------NLGRLSFESFK--  199 (492)
Q Consensus       153 ~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~-------------------------------~L~~L~l~~~~--  199 (492)
                      .++.+|..   ..+|+.|++++|.++.+|..+ .++                               +|+.|++++|.  
T Consensus       716 ~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l  791 (1153)
T PLN03210        716 RLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL  791 (1153)
T ss_pred             Cccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence            88888765   356788889999888887643 233                               45555555553  


Q ss_pred             -CCccccCCCCCCcEEecCCCc-ccccchhhhcCccccccccccccccccCCCC
Q 043408          200 -ELPECLGQLSSLRILFLDKNN-FERIPESIICLSHLYWLRISYCERLKSLPEL  251 (492)
Q Consensus       200 -~lp~~l~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l  251 (492)
                       .+|..++++++|+.|+|++|. ++.+|..+ .+++|+.|++++|..++.+|..
T Consensus       792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~  844 (1153)
T PLN03210        792 VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI  844 (1153)
T ss_pred             cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence             366677777777777777765 66777655 5677777777777776666543

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=1.6e-25  Score=226.63  Aligned_cols=273  Identities=26%  Similarity=0.347  Sum_probs=223.5

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccC
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH   79 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~   79 (492)
                      |..|||++|+++..|.++...+++-+|+||+|++.+ +|.  +-+++.|-.|||++ +.+..+|+.+..|..|+.|.|++
T Consensus       105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSN  182 (1255)
T ss_pred             ceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCC
Confidence            667888888888888888778888888888877543 443  66777778888877 56777888888888888888888


Q ss_pred             CCC----CcccCCccCCCCCCEEEeeCCCC-CcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408           80 CRS----LTSLSTSIHLESLKTLILSGCSN-LMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL  154 (492)
Q Consensus        80 ~~~----l~~lp~~~~l~~L~~L~L~~c~~-l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l  154 (492)
                      |..    ++.+|.   +++|++|.+++++. +..+|.++..+.+|..+|++.| .+..+|..+.++.+|+.|+||+| .+
T Consensus       183 NPL~hfQLrQLPs---mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N-~i  257 (1255)
T KOG0444|consen  183 NPLNHFQLRQLPS---MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN-KI  257 (1255)
T ss_pred             ChhhHHHHhcCcc---chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC-ce
Confidence            762    334444   77888888888654 3468999999999999999985 46678999999999999999995 56


Q ss_pred             CCcccccCCcccccccccccccccccccccccCCCCcccccCCCc----CCccccCCCCCCcEEecCCCcccccchhhhc
Q 043408          155 QRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK----ELPECLGQLSSLRILFLDKNNFERIPESIIC  230 (492)
Q Consensus       155 ~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~----~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~  230 (492)
                      +++....+...+|++|+++.|+++.+|+.+..+++|+.|.+.+++    .+|..++.+..|+.+..++|.++-+|+.+..
T Consensus       258 teL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR  337 (1255)
T KOG0444|consen  258 TELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR  337 (1255)
T ss_pred             eeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhh
Confidence            667667788899999999999999999999999999999998887    4999999999999999999999999999999


Q ss_pred             CccccccccccccccccCCC---CCcccceeecccccccccccccchhhccCCCC
Q 043408          231 LSHLYWLRISYCERLKSLPE---LPCDLSDIEAHCCSSLEALSGLSILFTQTSWN  282 (492)
Q Consensus       231 l~~L~~L~L~~c~~l~~lp~---l~~sL~~L~~~~C~~L~~l~~~~~~~~~~~~~  282 (492)
                      |.+|+.|.|++| ++..+|+   +.+.|+.|++++.+.|..-|.+.......++.
T Consensus       338 C~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefY  391 (1255)
T KOG0444|consen  338 CVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFY  391 (1255)
T ss_pred             hHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceee
Confidence            999999999885 5778887   46889999999999988777765544334443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=1.3e-23  Score=213.07  Aligned_cols=267  Identities=26%  Similarity=0.357  Sum_probs=183.7

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCC-C-CCCCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTK-I-PDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~-~-p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      +|++|.|.+|++.++...+..++.||.+++.+|+.-.. + +++-.+..|..|||+. +.+.++|..+.+-+++.+|+|+
T Consensus        56 kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS  134 (1255)
T KOG0444|consen   56 KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLS  134 (1255)
T ss_pred             hhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEEEcc
Confidence            35666777777776666666666666666666654322 3 3466677777777776 4566667666666777777777


Q ss_pred             CCCCCcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCC-------------------------C
Q 043408           79 HCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRL-------------------------E  131 (492)
Q Consensus        79 ~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l-------------------------~  131 (492)
                      +|. ++.+|...  ++.-|-.|+|++ +.++.+|+.+.++..|+.|.|++|...                         .
T Consensus       135 ~N~-IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~  212 (1255)
T KOG0444|consen  135 YNN-IETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD  212 (1255)
T ss_pred             cCc-cccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh
Confidence            654 66666543  666666667766 456666666666666666666665532                         2


Q ss_pred             ccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCC
Q 043408          132 GLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLS  209 (492)
Q Consensus       132 ~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~  209 (492)
                      .+|.++..+.+|..+|+|. +.+..+|+.+-++.+|+.|+|++|.|+++....+...+|++|++++++  .+|+.+..++
T Consensus       213 N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~  291 (1255)
T KOG0444|consen  213 NIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT  291 (1255)
T ss_pred             cCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhH
Confidence            4566666677777777776 456667777777777888888888887777777777778888887776  4788888888


Q ss_pred             CCcEEecCCCccc--ccchhhhcCccccccccccccccccCCCCC---cccceeecccccccccccccc
Q 043408          210 SLRILFLDKNNFE--RIPESIICLSHLYWLRISYCERLKSLPELP---CDLSDIEAHCCSSLEALSGLS  273 (492)
Q Consensus       210 ~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~sL~~L~~~~C~~L~~l~~~~  273 (492)
                      .|+.|.+.+|.++  .||+.|+++..|+.+...+ ++++-+|+..   ..|+.|.+ +|..|-++|...
T Consensus       292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaI  358 (1255)
T KOG0444|consen  292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKL-DHNRLITLPEAI  358 (1255)
T ss_pred             HHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcc-cccceeechhhh
Confidence            8888888888854  7888888888888888877 4577777753   34666665 456666666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.79  E-value=2e-20  Score=189.01  Aligned_cols=242  Identities=24%  Similarity=0.219  Sum_probs=127.7

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCC-CCCCCCCCCccEEEeeCcccCc------------------
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTK-IPDLSLATNLESLTFRGCTSLL------------------   60 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~-~p~l~~~~nL~~L~L~~c~~l~------------------   60 (492)
                      +|+.|+|.+|.|.++- +.++.++.|+.||||.|.+.+. .|.|..-.++++|+|++|....                  
T Consensus       126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence            3556666666666554 4455555666666665543321 2234445555555555543322                  


Q ss_pred             -----cccc-cccCCcCCcEEeccCCCCCcccC--CccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCc
Q 043408           61 -----ETHS-SIQYLNKLIVLNLEHCRSLTSLS--TSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEG  132 (492)
Q Consensus        61 -----~~~~-si~~L~~L~~L~L~~~~~l~~lp--~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~  132 (492)
                           .+|. ++.+|++|+.|+|..|. ++...  .+-++++|+.|.|..|..-+--...|..|.++++|+|+.|+....
T Consensus       206 rNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  206 RNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             cCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence                 2222 23335555555555443 22111  111344444444444221111122355566777777777666555


Q ss_pred             cccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccccccc-ccccCCCCcccccCCCc------------
Q 043408          133 LPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFK------------  199 (492)
Q Consensus       133 lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~------------  199 (492)
                      --.++.+|+.|+.|+|+.|.....-++.+...++|+.|+|+.|+|+.+++ ++..|..|+.|.++.+.            
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l  364 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL  364 (873)
T ss_pred             hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh
Confidence            55666777777777777765554445566666777777777777766654 34445555555555443            


Q ss_pred             ------------------CCccccCCCCCCcEEecCCCcccccch-hhhcCcccccccccccc
Q 043408          200 ------------------ELPECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCE  243 (492)
Q Consensus       200 ------------------~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~  243 (492)
                                        +-...+..+++|+.|+|.||+++.||. .+..+..|+.|+|.+|.
T Consensus       365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence                              111234446666666666666666553 55556666666666654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.79  E-value=4e-22  Score=193.42  Aligned_cols=246  Identities=27%  Similarity=0.315  Sum_probs=158.3

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      |..|.+++|.++.+-+.+..+..|.++++.+|+.....|.++.+..++.|+.+. .++.++|+.++.+.+|+.|+++.|.
T Consensus        47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~n~  125 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSSNE  125 (565)
T ss_pred             hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccccc
Confidence            345667777777777777777777777777776665556677777777777776 4566677777777777777777655


Q ss_pred             CCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           82 SLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        82 ~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                       +..+++.+ .+..|+.|+..+ +.+..+|..++++.+|..|++.+|+.....|..+. ++.|++||... +.++.+|+.
T Consensus       126 -~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~-N~L~tlP~~  201 (565)
T KOG0472|consen  126 -LKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNS-NLLETLPPE  201 (565)
T ss_pred             -eeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccch-hhhhcCChh
Confidence             44444444 566666666655 44556667777777777777776554444333333 66677776655 356667777


Q ss_pred             cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccC-CCCCCcEEecCCCcccccchhhhcCcccccc
Q 043408          161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLG-QLSSLRILFLDKNNFERIPESIICLSHLYWL  237 (492)
Q Consensus       161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~-~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L  237 (492)
                      ++.|.+|..|++..|.|..+| .++++..|.+|.+..+.  .+|.... ++++|..|||..|++++.|+.+.-+.+|.+|
T Consensus       202 lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL  280 (565)
T KOG0472|consen  202 LGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL  280 (565)
T ss_pred             hcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhh
Confidence            777777777777777777766 56666666666666554  2554443 6666666666666666666666666666666


Q ss_pred             ccccccccccCCCCCcc
Q 043408          238 RISYCERLKSLPELPCD  254 (492)
Q Consensus       238 ~L~~c~~l~~lp~l~~s  254 (492)
                      |+++| .+..+|.-.++
T Consensus       281 DlSNN-~is~Lp~sLgn  296 (565)
T KOG0472|consen  281 DLSNN-DISSLPYSLGN  296 (565)
T ss_pred             cccCC-ccccCCccccc
Confidence            66663 34555543333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.79  E-value=3.6e-20  Score=187.19  Aligned_cols=239  Identities=23%  Similarity=0.189  Sum_probs=157.8

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCc----------------------
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGC----------------------   56 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c----------------------   56 (492)
                      |+++|+|++|.|+.+- ..+..+.+|..|.|+.|++.+..+. |.++++|+.|+|..|                      
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence            3455555555555443 2334444555555555543322221 444555555555443                      


Q ss_pred             --ccCccccccccCCcCCcEEeccCCCCCcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCc
Q 043408           57 --TSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEG  132 (492)
Q Consensus        57 --~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~  132 (492)
                        ..-.--...+..|.++++|+|..|+ +..+....  +++.|+.|++++|....--+++....++|++|+|++|....-
T Consensus       254 rN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  254 RNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL  332 (873)
T ss_pred             hcCcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence              2222222334556777777777765 44443322  788888888888655444456677788888888888877776


Q ss_pred             cccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccc----ccccccccCCCCcccccCCCc--CCc-ccc
Q 043408          133 LPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR----EVPSSIVCLKNLGRLSFESFK--ELP-ECL  205 (492)
Q Consensus       133 lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~----~lp~~~~~l~~L~~L~l~~~~--~lp-~~l  205 (492)
                      -+..+..|.+|++|+|+.|+...--...+..+++|++|||+.|.+.    +-...+..+++|+.|.+.|++  .+| ..+
T Consensus       333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf  412 (873)
T KOG4194|consen  333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF  412 (873)
T ss_pred             ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh
Confidence            7777788888888888886543322335777889999999999765    323346779999999999987  455 478


Q ss_pred             CCCCCCcEEecCCCccccc-chhhhcCcccccccccc
Q 043408          206 GQLSSLRILFLDKNNFERI-PESIICLSHLYWLRISY  241 (492)
Q Consensus       206 ~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~  241 (492)
                      ..+..|++|||.+|.+.+| |..+..+ .|+.|.++.
T Consensus       413 sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  413 SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             ccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            9999999999999998765 5566666 888887754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.77  E-value=2.5e-21  Score=187.97  Aligned_cols=235  Identities=29%  Similarity=0.352  Sum_probs=210.3

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      |++|++.+|++.++|..++.+.+++.++.++|+.....+.++.+.+|+.|+++. ..+.+++++++.+..|+.++..+|.
T Consensus        70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~N~  148 (565)
T KOG0472|consen   70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLDATNNQ  148 (565)
T ss_pred             eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhhccccc
Confidence            678999999999999999999999999999998776666799999999999998 5677889999999999999988865


Q ss_pred             CCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           82 SLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        82 ~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                       +.++|..+ ++.+|..|++.+ +.+..+|+..-+++.|++||... +.++.+|..++.+.+|+.|+|..| .+..+| +
T Consensus       149 -i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lP-e  223 (565)
T KOG0472|consen  149 -ISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIRFLP-E  223 (565)
T ss_pred             -cccCchHHHHHHHHHHhhccc-cchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccccCC-C
Confidence             77777776 889999999999 56777777766699999999887 467899999999999999999985 566788 7


Q ss_pred             cCCcccccccccccccccccccccc-cCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCcccccc
Q 043408          161 LGNLEALKELKAEGIAIREVPSSIV-CLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWL  237 (492)
Q Consensus       161 l~~l~~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L  237 (492)
                      |+.+..|++|+++.|.|+-+|+... .+++|..|++..++  +.|+.+..+.+|++||+++|.++.+|.+++++ .|+.|
T Consensus       224 f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L  302 (565)
T KOG0472|consen  224 FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFL  302 (565)
T ss_pred             CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeeh
Confidence            8999999999999999999998765 89999999999886  79999999999999999999999999999999 99999


Q ss_pred             cccccc
Q 043408          238 RISYCE  243 (492)
Q Consensus       238 ~L~~c~  243 (492)
                      -+.+|+
T Consensus       303 ~leGNP  308 (565)
T KOG0472|consen  303 ALEGNP  308 (565)
T ss_pred             hhcCCc
Confidence            999986

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.66  E-value=1.2e-15  Score=165.90  Aligned_cols=234  Identities=24%  Similarity=0.262  Sum_probs=166.6

Q ss_pred             eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCC
Q 043408            3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRS   82 (492)
Q Consensus         3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~   82 (492)
                      ..|+++.++++.+|..+.  ++|+.|++++|++. .+|.  ..++|++|+|++| .+..+|..   .++|+.|++++|. 
T Consensus       204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~--lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~-  273 (788)
T PRK15387        204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNP-  273 (788)
T ss_pred             cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC--CCCCCcEEEecCC-ccCcccCc---ccccceeeccCCc-
Confidence            468999999999998765  48999999998754 5665  3689999999986 56667643   4688899998875 


Q ss_pred             CcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccC
Q 043408           83 LTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELG  162 (492)
Q Consensus        83 l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~  162 (492)
                      +..+|.  .+.+|+.|++++| .+..+|..   .++|+.|++++|... .+|..   ..+|+.|++++|. ++.+|..  
T Consensus       274 L~~Lp~--lp~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~-L~~LP~l--  340 (788)
T PRK15387        274 LTHLPA--LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQ-LTSLPTL--  340 (788)
T ss_pred             hhhhhh--chhhcCEEECcCC-cccccccc---ccccceeECCCCccc-cCCCC---cccccccccccCc-ccccccc--
Confidence            666765  2467888999885 45667653   468999999987554 45542   2457778888754 4456642  


Q ss_pred             CcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccccc
Q 043408          163 NLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRIS  240 (492)
Q Consensus       163 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~  240 (492)
                       ..+|+.|++++|+++.+|...   .+|+.|++.++.  .+|..   +++|+.|++++|.++.+|..   .++|+.|+++
T Consensus       341 -p~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS  410 (788)
T PRK15387        341 -PSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVS  410 (788)
T ss_pred             -ccccceEecCCCccCCCCCCC---cccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEcc
Confidence             246888888888888887643   456666666654  35532   35788888888888877753   2578888888


Q ss_pred             cccccccCCCCCcccceeecccccccccccc
Q 043408          241 YCERLKSLPELPCDLSDIEAHCCSSLEALSG  271 (492)
Q Consensus       241 ~c~~l~~lp~l~~sL~~L~~~~C~~L~~l~~  271 (492)
                      +|. +..+|..+.+|+.|++.++ .++.+|.
T Consensus       411 ~N~-LssIP~l~~~L~~L~Ls~N-qLt~LP~  439 (788)
T PRK15387        411 GNR-LTSLPMLPSGLLSLSVYRN-QLTRLPE  439 (788)
T ss_pred             CCc-CCCCCcchhhhhhhhhccC-cccccCh
Confidence            864 6778877777888777663 3555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.66  E-value=6.2e-16  Score=168.96  Aligned_cols=224  Identities=24%  Similarity=0.345  Sum_probs=157.0

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      ..+|++.+++++.+|..+.  ++|+.|+|++|++. .+|. ....+|++|++++|. +..+|..+.  .+|+.|+|++|.
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~-~l~~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~  252 (754)
T PRK15370        180 KTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPE-NLQGNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINR  252 (754)
T ss_pred             ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCCh-hhccCCCEEECCCCc-cccCChhhh--ccccEEECcCCc
Confidence            4678888888888886554  57888999888755 4553 113588889888864 566776554  478888888876


Q ss_pred             CCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccccc
Q 043408           82 SLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL  161 (492)
Q Consensus        82 ~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l  161 (492)
                       +..+|..+ ..+|+.|++++| .+..+|..+.  ++|+.|++++|... .+|..+.  .+|+.|++++|. +..+|..+
T Consensus       253 -L~~LP~~l-~s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l  323 (754)
T PRK15370        253 -ITELPERL-PSALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNS-LTALPETL  323 (754)
T ss_pred             -cCcCChhH-hCCCCEEECcCC-ccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCc-cccCCccc
Confidence             56777644 357888888864 5566776654  57888888887543 4555443  468888888754 44566544


Q ss_pred             CCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCcccccccc
Q 043408          162 GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRI  239 (492)
Q Consensus       162 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L  239 (492)
                      .  ++|+.|++++|.++.+|..+.  ++|+.|++++|.  .+|..+  .++|+.|+|++|+++.+|..+.  ..|+.|++
T Consensus       324 ~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdL  395 (754)
T PRK15370        324 P--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQA  395 (754)
T ss_pred             c--ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhh
Confidence            3  578888888888888877653  678888888775  355544  3678888888888888887665  36888888


Q ss_pred             ccccccccCCC
Q 043408          240 SYCERLKSLPE  250 (492)
Q Consensus       240 ~~c~~l~~lp~  250 (492)
                      ++|+ +..+|+
T Consensus       396 s~N~-L~~LP~  405 (754)
T PRK15370        396 SRNN-LVRLPE  405 (754)
T ss_pred             ccCC-cccCch
Confidence            8854 556665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.63  E-value=5.4e-16  Score=169.42  Aligned_cols=222  Identities=23%  Similarity=0.348  Sum_probs=174.4

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|+.|+|++|+|+.+|..+.  .+|+.|++++|.+. .+|. ....+|+.|+|++|. +..+|..+.  .+|+.|++++|
T Consensus       200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~-~l~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N  272 (754)
T PRK15370        200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPA-TLPDTIQEMELSINR-ITELPERLP--SALQSLDLFHN  272 (754)
T ss_pred             CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCCh-hhhccccEEECcCCc-cCcCChhHh--CCCCEEECcCC
Confidence            47899999999999997664  59999999999754 5664 223589999999975 557887765  58999999976


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                      . +..+|..+ .++|+.|++++| .+..+|..+.  ++|+.|++++|... .+|..+.  ++|+.|++++|. +..+|..
T Consensus       273 ~-L~~LP~~l-~~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~  343 (754)
T PRK15370        273 K-ISCLPENL-PEELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENA-LTSLPAS  343 (754)
T ss_pred             c-cCcccccc-CCCCcEEECCCC-ccccCcccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCc-cccCChh
Confidence            5 77888754 368999999996 5667776553  47999999998655 4665443  689999999975 4557766


Q ss_pred             cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhc----Cccc
Q 043408          161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIIC----LSHL  234 (492)
Q Consensus       161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~----l~~L  234 (492)
                      +.  ++|+.|++++|.+..+|..+.  ++|+.|++++|.  .+|..+.  .+|+.|++++|+++.+|..+..    ++.+
T Consensus       344 l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l  417 (754)
T PRK15370        344 LP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQP  417 (754)
T ss_pred             hc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCc
Confidence            54  689999999999999987663  689999999986  4666553  4799999999999988765544    4788


Q ss_pred             cccccccccc
Q 043408          235 YWLRISYCER  244 (492)
Q Consensus       235 ~~L~L~~c~~  244 (492)
                      ..|++.+|+.
T Consensus       418 ~~L~L~~Npl  427 (754)
T PRK15370        418 TRIIVEYNPF  427 (754)
T ss_pred             cEEEeeCCCc
Confidence            8999999863

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.62  E-value=2.5e-15  Score=163.49  Aligned_cols=229  Identities=24%  Similarity=0.243  Sum_probs=161.2

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|+.|++.+|+++.+|..   .++|++|+|++|++. .+|.+  .++|+.|+|++|. +..+|..   ..+|+.|++++|
T Consensus       223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N  292 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGN  292 (788)
T ss_pred             CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-hhhhhhc---hhhcCEEECcCC
Confidence            478999999999999854   589999999999754 56643  5789999999864 5556642   357888999987


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                      . ++.+|.  .+++|+.|++++| .+..+|...   .+|+.|++++|... .+|..   ..+|+.|+|++| .+..+|..
T Consensus       293 ~-Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp---~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N-~Ls~LP~l  360 (788)
T PRK15387        293 Q-LTSLPV--LPPGLQELSVSDN-QLASLPALP---SELCKLWAYNNQLT-SLPTL---PSGLQELSVSDN-QLASLPTL  360 (788)
T ss_pred             c-cccccc--cccccceeECCCC-ccccCCCCc---ccccccccccCccc-ccccc---ccccceEecCCC-ccCCCCCC
Confidence            5 777775  3578999999986 455566532   35777888876553 45542   247888888885 44456653


Q ss_pred             cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccc
Q 043408          161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR  238 (492)
Q Consensus       161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~  238 (492)
                      .   .+|+.|++++|.+..+|...   .+|+.|++++|.  .+|..   .++|+.|++++|.++.+|...   .+|+.|+
T Consensus       361 p---~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l~---~~L~~L~  428 (788)
T PRK15387        361 P---SELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPMLP---SGLLSLS  428 (788)
T ss_pred             C---cccceehhhccccccCcccc---cccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcch---hhhhhhh
Confidence            2   45777888888888777543   467778887765  34432   357888888888888777533   4677788


Q ss_pred             cccccccccCCCC---Ccccceeeccccc
Q 043408          239 ISYCERLKSLPEL---PCDLSDIEAHCCS  264 (492)
Q Consensus       239 L~~c~~l~~lp~l---~~sL~~L~~~~C~  264 (492)
                      +++|. ++.+|..   .++++.|++.+.+
T Consensus       429 Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        429 VYRNQ-LTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             hccCc-ccccChHHhhccCCCeEECCCCC
Confidence            88754 6677753   3566677776654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.61  E-value=1.2e-17  Score=177.02  Aligned_cols=78  Identities=28%  Similarity=0.354  Sum_probs=53.8

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      |+.|+|++|.+...|..+..+.+|+.|+++.|.+. .+| ..+++.+|++|+|.+ +.+..+|.++..+++|+.|++++|
T Consensus        47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N  124 (1081)
T KOG0618|consen   47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFN  124 (1081)
T ss_pred             eEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccchh
Confidence            66777777777777777777777777777776543 333 366677777777764 556667777777777777777665


Q ss_pred             C
Q 043408           81 R   81 (492)
Q Consensus        81 ~   81 (492)
                      .
T Consensus       125 ~  125 (1081)
T KOG0618|consen  125 H  125 (1081)
T ss_pred             c
Confidence            4

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.61  E-value=1.7e-17  Score=176.00  Aligned_cols=237  Identities=30%  Similarity=0.367  Sum_probs=155.7

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      |++++++++++..+|+.+..+.+|+.++..+|.+ ..+|. +...++|+.|.+..| .+..+|+....++.|++|+|..|
T Consensus       243 l~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  243 LQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             ceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhc
Confidence            4555555555555555555555555555555544 33332 444555555555442 34444444445555555555554


Q ss_pred             CCCcccCCcc---CCCCCCEEEeeCCCCCcccCcc-ccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCC
Q 043408           81 RSLTSLSTSI---HLESLKTLILSGCSNLMKLPSS-IERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQR  156 (492)
Q Consensus        81 ~~l~~lp~~~---~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~  156 (492)
                      . +.++|...   -..+|+.|+.+. ..+...|.. =..++.|+.|++.+|......-..+.+.++|+.|+|++ +.++.
T Consensus       321 ~-L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~  397 (1081)
T KOG0618|consen  321 N-LPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNS  397 (1081)
T ss_pred             c-ccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-ccccc
Confidence            3 44444422   111133333332 222233321 12356788889999888887777788899999999998 46777


Q ss_pred             cccc-cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCccc--ccchhhhcC
Q 043408          157 LPNE-LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFE--RIPESIICL  231 (492)
Q Consensus       157 lp~~-l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l  231 (492)
                      +|+. +.+++.|++|+++||.++.+|..+..+..|++|...++.  .+| .+..++.|+.+|++.|+++  .+|..... 
T Consensus       398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-  475 (1081)
T KOG0618|consen  398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-  475 (1081)
T ss_pred             CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-
Confidence            8864 788999999999999999999999999999999988776  366 8888999999999999987  44543333 


Q ss_pred             cccccccccccccc
Q 043408          232 SHLYWLRISYCERL  245 (492)
Q Consensus       232 ~~L~~L~L~~c~~l  245 (492)
                      ++|++||+++|..+
T Consensus       476 p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  476 PNLKYLDLSGNTRL  489 (1081)
T ss_pred             cccceeeccCCccc
Confidence            89999999999864

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=6e-17  Score=141.04  Aligned_cols=154  Identities=32%  Similarity=0.445  Sum_probs=96.2

Q ss_pred             CCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEecc
Q 043408           71 KLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLS  149 (492)
Q Consensus        71 ~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls  149 (492)
                      +++.|.|++|+ +..+|..+ .+.+|+.|++++ +.++++|.+|+.+++|+.|+++-| .+..+|..++.++.|+.|||+
T Consensus        34 ~ITrLtLSHNK-l~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNK-LTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCc-eeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhcc
Confidence            33344444433 33444433 444444444444 345566666777777777777654 345677777777778888877


Q ss_pred             CCCCC-CCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhh
Q 043408          150 GCSNL-QRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESI  228 (492)
Q Consensus       150 ~c~~l-~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l  228 (492)
                      .|+.. ..+|..+-.|+.|+.|++++|.++-+|..+                     +.+++|+.|.+..|.+-++|..+
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv---------------------g~lt~lqil~lrdndll~lpkei  169 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV---------------------GKLTNLQILSLRDNDLLSLPKEI  169 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCCcccCChhh---------------------hhhcceeEEeeccCchhhCcHHH
Confidence            76544 357777777888888888888887777654                     55555666666666666666666


Q ss_pred             hcCccccccccccccccccCC
Q 043408          229 ICLSHLYWLRISYCERLKSLP  249 (492)
Q Consensus       229 ~~l~~L~~L~L~~c~~l~~lp  249 (492)
                      +.++.|+.|++.+| +++.+|
T Consensus       170 g~lt~lrelhiqgn-rl~vlp  189 (264)
T KOG0617|consen  170 GDLTRLRELHIQGN-RLTVLP  189 (264)
T ss_pred             HHHHHHHHHhcccc-eeeecC
Confidence            66666666666663 344444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.52  E-value=1.9e-15  Score=150.99  Aligned_cols=241  Identities=18%  Similarity=0.115  Sum_probs=154.8

Q ss_pred             EEEccCCCcc-ccc-ccccCCCCCcEEEccCCCCCCC----CC-CCCCCCCccEEEeeCcccC------ccccccccCCc
Q 043408            4 SLEMPHSSIK-QLW-KGVQRLVNLKHLNLSHSEHLTK----IP-DLSLATNLESLTFRGCTSL------LETHSSIQYLN   70 (492)
Q Consensus         4 ~L~L~~s~i~-~l~-~~~~~l~~L~~L~Ls~~~~l~~----~p-~l~~~~nL~~L~L~~c~~l------~~~~~si~~L~   70 (492)
                      .|+|..+.++ .-| ..+..+.+|+.|+++++.+...    ++ .+...++|++|+++++...      ..++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4667777775 333 4445567788888888775332    22 2556677888888776433      22344566677


Q ss_pred             CCcEEeccCCCCCcccCCcc-CC---CCCCEEEeeCCCCCc----ccCccccCC-CCCcEEEcccCCCCC----cccccc
Q 043408           71 KLIVLNLEHCRSLTSLSTSI-HL---ESLKTLILSGCSNLM----KLPSSIERL-SSLILLNLRNCSRLE----GLPSKI  137 (492)
Q Consensus        71 ~L~~L~L~~~~~l~~lp~~~-~l---~~L~~L~L~~c~~l~----~lp~~i~~l-~~L~~L~L~~~~~l~----~lp~~i  137 (492)
                      +|+.|++++|......+..+ .+   ++|++|++++|....    .+...+..+ ++|+.|++++|....    .++..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            88888888876432222222 22   448888888875442    233445666 788888888887663    234455


Q ss_pred             CCCCCCCEEeccCCCCCC----CcccccCCccccccccccccccc-----ccccccccCCCCcccccCCCcCC-------
Q 043408          138 CKLKSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIR-----EVPSSIVCLKNLGRLSFESFKEL-------  201 (492)
Q Consensus       138 ~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l-------  201 (492)
                      ..+++|++|++++|...+    .++..+...++|+.|++++|.+.     .+...+..+++|+.|++++|.--       
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            667788888888876542    23344555568888888888765     34455667788888888887511       


Q ss_pred             cccc-CCCCCCcEEecCCCccc-----ccchhhhcCccccccccccccc
Q 043408          202 PECL-GQLSSLRILFLDKNNFE-----RIPESIICLSHLYWLRISYCER  244 (492)
Q Consensus       202 p~~l-~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~~  244 (492)
                      ...+ ...+.|++|++++|.++     .+...+..+++|+++++++|..
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence            1111 12478889999988875     4455666778888998888754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.50  E-value=1.2e-15  Score=133.01  Aligned_cols=164  Identities=30%  Similarity=0.451  Sum_probs=105.2

Q ss_pred             CcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccC
Q 043408           83 LTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELG  162 (492)
Q Consensus        83 l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~  162 (492)
                      ...++..+++.++..|.++. +++..+|+.|..+.+|+.|++++| .++.+|..+..++.|+.|+++- +.+..+|..+|
T Consensus        23 f~~~~gLf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfg   99 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFG   99 (264)
T ss_pred             Hhhcccccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccC
Confidence            34455555666677777776 345556666666666666666653 2344555555555555555543 23444455555


Q ss_pred             CcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCccccccccccc
Q 043408          163 NLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYC  242 (492)
Q Consensus       163 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c  242 (492)
                      .++.|+.||+..|++.+                   ..+|..+..++.|+.|+|+.|.|+.+|..++++++|+.|.+.+|
T Consensus       100 s~p~levldltynnl~e-------------------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNE-------------------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             CCchhhhhhcccccccc-------------------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence            55555555554444331                   13667778888999999999999999999999999999999996


Q ss_pred             cccccCCCC---Ccccceeeccccccccccc
Q 043408          243 ERLKSLPEL---PCDLSDIEAHCCSSLEALS  270 (492)
Q Consensus       243 ~~l~~lp~l---~~sL~~L~~~~C~~L~~l~  270 (492)
                      . +-++|.-   ...|++|.+.+- .|+.++
T Consensus       161 d-ll~lpkeig~lt~lrelhiqgn-rl~vlp  189 (264)
T KOG0617|consen  161 D-LLSLPKEIGDLTRLRELHIQGN-RLTVLP  189 (264)
T ss_pred             c-hhhCcHHHHHHHHHHHHhcccc-eeeecC
Confidence            5 5566653   356677777663 344444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.50  E-value=2.1e-15  Score=146.83  Aligned_cols=196  Identities=22%  Similarity=0.229  Sum_probs=135.7

Q ss_pred             ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccccc-ccCCc--------
Q 043408            2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSS-IQYLN--------   70 (492)
Q Consensus         2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~s-i~~L~--------   70 (492)
                      -++++|..|+|+.|| ..|+.+++||+||||+|.+....|+ |.++.+|-+|.+.++..+..+|.. ++.|.        
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            478999999999999 5688999999999999998777776 999999999999998888887753 33444        


Q ss_pred             ----------------CCcEEeccCCCCCcccCCcc--CCCCCCEEEeeCCCCCc-------------------------
Q 043408           71 ----------------KLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLM-------------------------  107 (492)
Q Consensus        71 ----------------~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~-------------------------  107 (492)
                                      +|..|.+.+|. ++.++...  .+..++.+.+..+..+-                         
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence                            44444444433 33333311  45555555544322100                         


Q ss_pred             ------------------------------------ccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccC
Q 043408          108 ------------------------------------KLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSG  150 (492)
Q Consensus       108 ------------------------------------~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~  150 (492)
                                                          ..| ..|..+++|+.|+|++|+..+.-+.++..+..+++|.|.+
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence                                                111 1267788999999998888887778888888888888888


Q ss_pred             CCCCCCcccccCCccccccccccccccccc-ccccccCCCCcccccCCC
Q 043408          151 CSNLQRLPNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESF  198 (492)
Q Consensus       151 c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~  198 (492)
                      |+....-...+..+..|+.|+|.+|+|+-+ |..+..+.+|..|.+-++
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN  356 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence            644322233567778888888888888744 444556666666666443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.47  E-value=5.4e-15  Score=147.74  Aligned_cols=221  Identities=22%  Similarity=0.195  Sum_probs=98.0

Q ss_pred             ceEEEccCCCcc-----cccccccCCCCCcEEEccCCCCCC--C----C-CCCCCCCCccEEEeeCcccCccccccccCC
Q 043408            2 LVSLEMPHSSIK-----QLWKGVQRLVNLKHLNLSHSEHLT--K----I-PDLSLATNLESLTFRGCTSLLETHSSIQYL   69 (492)
Q Consensus         2 L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~--~----~-p~l~~~~nL~~L~L~~c~~l~~~~~si~~L   69 (492)
                      |++|+++++.++     .+...+...++|+.++++++....  .    + ..+..+++|++|+|++|......+..+..+
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l  104 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL  104 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence            455555555552     233444445555555555554331  0    0 113445555555555554443333333333


Q ss_pred             cC---CcEEeccCCCCCc----ccCCcc-CC-CCCCEEEeeCCCCCc----ccCccccCCCCCcEEEcccCCCCC----c
Q 043408           70 NK---LIVLNLEHCRSLT----SLSTSI-HL-ESLKTLILSGCSNLM----KLPSSIERLSSLILLNLRNCSRLE----G  132 (492)
Q Consensus        70 ~~---L~~L~L~~~~~l~----~lp~~~-~l-~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~L~~~~~l~----~  132 (492)
                      .+   |+.|++++|....    .+...+ .+ ++|++|++++|....    .++..+..+++|++|++++|...+    .
T Consensus       105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  184 (319)
T cd00116         105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA  184 (319)
T ss_pred             hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence            33   5555555554210    011111 23 555555555554331    223334445555555555554442    1


Q ss_pred             cccccCCCCCCCEEeccCCCCCC----CcccccCCccccccccccccccccc--ccccc----cCCCCcccccCCCcC--
Q 043408          133 LPSKICKLKSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIREV--PSSIV----CLKNLGRLSFESFKE--  200 (492)
Q Consensus       133 lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~l--p~~~~----~l~~L~~L~l~~~~~--  200 (492)
                      ++..+..+++|+.|++++|....    .+...+..+++|+.|++++|.+...  .....    ..+.|+.|++.+|.-  
T Consensus       185 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~  264 (319)
T cd00116         185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD  264 (319)
T ss_pred             HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence            22233344455555555553321    1223344455555555555554421  00001    124555555555531  


Q ss_pred             -----CccccCCCCCCcEEecCCCccc
Q 043408          201 -----LPECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       201 -----lp~~l~~l~~L~~L~L~~n~l~  222 (492)
                           +...+..+++|+.+++++|.+.
T Consensus       265 ~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         265 DGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHHHHHHHHhcCCCccEEECCCCCCc
Confidence                 1233344455555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.13  E-value=2.1e-11  Score=135.61  Aligned_cols=246  Identities=28%  Similarity=0.377  Sum_probs=148.3

Q ss_pred             CCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCccc-Ccccccc-ccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEEE
Q 043408           23 VNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTS-LLETHSS-IQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLI   99 (492)
Q Consensus        23 ~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~-l~~~~~s-i~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~   99 (492)
                      ...+.+.+-++.+. .+++-...++|++|-+.++.. +..++.. +..++.|++|||++|..+..+|..+ ++-+||.|+
T Consensus       523 ~~~rr~s~~~~~~~-~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIE-HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hheeEEEEeccchh-hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            44556666555432 333334445677777776553 4444432 5567777777777777777777777 577777777


Q ss_pred             eeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCC--CCCcccccCCcccccccccccccc
Q 043408          100 LSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSN--LQRLPNELGNLEALKELKAEGIAI  177 (492)
Q Consensus       100 L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~--l~~lp~~l~~l~~L~~L~l~~~~i  177 (492)
                      ++++ .+..+|..++++..|.+|++..+..+..+|..+..+.+|++|.+.....  ....-..+.++++|+.+.......
T Consensus       602 L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~  680 (889)
T KOG4658|consen  602 LSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV  680 (889)
T ss_pred             ccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence            7773 4667777777777888888777776666666666677888887765321  111222334445555554433332


Q ss_pred             cccccccccCCCCc----ccccCCCc--CCccccCCCCCCcEEecCCCcccccch-h-----hh-cCccccccccccccc
Q 043408          178 REVPSSIVCLKNLG----RLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPE-S-----II-CLSHLYWLRISYCER  244 (492)
Q Consensus       178 ~~lp~~~~~l~~L~----~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~-~-----l~-~l~~L~~L~L~~c~~  244 (492)
                       .+-..+..+..|.    .+.+.++.  ..+..+..+.+|+.|.+.++.+.++.. .     .. .++++..+.+.+|..
T Consensus       681 -~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~  759 (889)
T KOG4658|consen  681 -LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM  759 (889)
T ss_pred             -HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc
Confidence             1111112222222    22322222  355667788888999888888653211 1     11 144677777888887


Q ss_pred             cccCCC--CCcccceeecccccccccccc
Q 043408          245 LKSLPE--LPCDLSDIEAHCCSSLEALSG  271 (492)
Q Consensus       245 l~~lp~--l~~sL~~L~~~~C~~L~~l~~  271 (492)
                      ++.+..  .+++|+.|.+..|..++.+..
T Consensus       760 ~r~l~~~~f~~~L~~l~l~~~~~~e~~i~  788 (889)
T KOG4658|consen  760 LRDLTWLLFAPHLTSLSLVSCRLLEDIIP  788 (889)
T ss_pred             ccccchhhccCcccEEEEecccccccCCC
Confidence            777653  578999999999988876654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.12  E-value=2.5e-11  Score=135.10  Aligned_cols=122  Identities=25%  Similarity=0.296  Sum_probs=78.9

Q ss_pred             eEEEccCCCcccccccccCCCCCcEEEccCCCC-CCCCCC--CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccC
Q 043408            3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEH-LTKIPD--LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH   79 (492)
Q Consensus         3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~-l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~   79 (492)
                      +...+-++++..++... .+++|+.|-+.+|.. +..++.  |..++.|++|||++|..+.++|.+|+.|-+|++|++++
T Consensus       526 rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~  604 (889)
T KOG4658|consen  526 RRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD  604 (889)
T ss_pred             eEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence            44555556665554332 234677777766652 333433  66677777777777777777777777777777777776


Q ss_pred             CCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEccc
Q 043408           80 CRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRN  126 (492)
Q Consensus        80 ~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~  126 (492)
                      +. +..+|..+ +++.|.+|++..+..+..+|..+..+.+|++|.+..
T Consensus       605 t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  605 TG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             CC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            43 66777766 677777777777666665655555677777777665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=2e-11  Score=120.82  Aligned_cols=211  Identities=20%  Similarity=0.217  Sum_probs=144.6

Q ss_pred             cccCCCCCcEEEccCCCCCCCC--CCCCCCCCccEEEeeCcc--cCccccccccCCcCCcEEeccCCCCCcccCCcc--C
Q 043408           18 GVQRLVNLKHLNLSHSEHLTKI--PDLSLATNLESLTFRGCT--SLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--H   91 (492)
Q Consensus        18 ~~~~l~~L~~L~Ls~~~~l~~~--p~l~~~~nL~~L~L~~c~--~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~--~   91 (492)
                      --.++++|+.+.|.++......  .....+++++.|||++|-  +...+..-+..|++|+.|+|+.|+..-......  .
T Consensus       116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            3456899999999988754322  146779999999999853  222333445679999999999987433222222  6


Q ss_pred             CCCCCEEEeeCCCCCc-ccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcc--cccCCccccc
Q 043408           92 LESLKTLILSGCSNLM-KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP--NELGNLEALK  168 (492)
Q Consensus        92 l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~  168 (492)
                      +++|+.|.+++|.... .+......+++|+.|+|..|..+..-......+..|+.|+|++|+... ++  ...+.++.|+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchh
Confidence            8899999999997653 344556778999999999986444333334456788899998865543 33  3567788888


Q ss_pred             ccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccch--hhhcCcccccccccccc
Q 043408          169 ELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPE--SIICLSHLYWLRISYCE  243 (492)
Q Consensus       169 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~c~  243 (492)
                      .|+++.|+|.++..--  .            +..+-...+++|++|++..|++..++.  .+..+.+|+.|.+..++
T Consensus       275 ~Lnls~tgi~si~~~d--~------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPD--V------------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             hhhccccCcchhcCCC--c------------cchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            8888888877542100  0            000113567889999999999876653  56667778888776654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.06  E-value=9.7e-12  Score=121.56  Aligned_cols=144  Identities=17%  Similarity=0.161  Sum_probs=93.5

Q ss_pred             ccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcc
Q 043408            7 MPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTS   85 (492)
Q Consensus         7 L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~   85 (492)
                      -++.+++.+|..+.  +.-..|+|..|.+....+. |+.+++|++|||+.|.....-|..+..+.+|..|-+.++..++.
T Consensus        53 Cr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   53 CRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             ccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence            34455666665443  2455677777765444433 88888888888888766666677777888887777777666888


Q ss_pred             cCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCC
Q 043408           86 LSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCS  152 (492)
Q Consensus        86 lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~  152 (492)
                      +|...  ++.+|+.|.+.-|...-.....+..+++|..|.+.+|.....--.++..+..++.+.+..+.
T Consensus       131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            77655  67777777666543333334557777778777777754433222256667777777766554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.04  E-value=3e-10  Score=117.31  Aligned_cols=179  Identities=35%  Similarity=0.457  Sum_probs=113.1

Q ss_pred             ccCCcCCcEEeccCCCCCcccCCccCCC--CCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCC
Q 043408           66 IQYLNKLIVLNLEHCRSLTSLSTSIHLE--SLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSL  143 (492)
Q Consensus        66 i~~L~~L~~L~L~~~~~l~~lp~~~~l~--~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L  143 (492)
                      +..+..++.|++.++. +..++......  +|+.|++++ +.+..+|..++.+++|+.|++++|.. ..+|...+.++.|
T Consensus       112 ~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L  188 (394)
T COG4886         112 LLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNL  188 (394)
T ss_pred             hhcccceeEEecCCcc-cccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhh
Confidence            4444566777666644 55555555332  677777776 34555656667777777777776543 3444444466677


Q ss_pred             CEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcC--CccccCCCCCCcEEecCCCcc
Q 043408          144 ERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKE--LPECLGQLSSLRILFLDKNNF  221 (492)
Q Consensus       144 ~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~--lp~~l~~l~~L~~L~L~~n~l  221 (492)
                      +.|++++ +.+..+|...+....|++|.+++|.+.+.+..+..+.++..+.+.++..  ++..++.+++++.|++++|.+
T Consensus       189 ~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         189 NNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             hheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccc
Confidence            7777776 3555666655556667777777776666666666666666666555543  356667777777777777777


Q ss_pred             cccchhhhcCccccccccccccccccCC
Q 043408          222 ERIPESIICLSHLYWLRISYCERLKSLP  249 (492)
Q Consensus       222 ~~lp~~l~~l~~L~~L~L~~c~~l~~lp  249 (492)
                      +.++. +..+.+|+.|+++++.....+|
T Consensus       268 ~~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         268 SSISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccccc-ccccCccCEEeccCccccccch
Confidence            76665 6677777777777765444433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.02  E-value=1.4e-11  Score=125.34  Aligned_cols=189  Identities=28%  Similarity=0.413  Sum_probs=154.6

Q ss_pred             CcCCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEe
Q 043408           69 LNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLN  147 (492)
Q Consensus        69 L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~  147 (492)
                      +..-...+|+.|+ ...+|... .+..|+.+.++. +.+..+|..+.++..|.+|||+.|. +..+|..++.|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEE
Confidence            4444566777765 55666555 566777777776 4567889999999999999999864 567888888887 89999


Q ss_pred             ccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccc
Q 043408          148 LSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIP  225 (492)
Q Consensus       148 Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp  225 (492)
                      +++ ++++.+|+.++....|..||.+.|.+..+|+-++.+.+|+.|.+.++.  .+|..+.. -.|..||+++|++..||
T Consensus       150 ~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iP  227 (722)
T KOG0532|consen  150 VSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLP  227 (722)
T ss_pred             Eec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecc
Confidence            987 688899999999999999999999999999999999999999998876  68888884 46899999999999999


Q ss_pred             hhhhcCccccccccccccccccCCCCC------cccceeeccccc
Q 043408          226 ESIICLSHLYWLRISYCERLKSLPELP------CDLSDIEAHCCS  264 (492)
Q Consensus       226 ~~l~~l~~L~~L~L~~c~~l~~lp~l~------~sL~~L~~~~C~  264 (492)
                      .++.++..|++|-|.+|+ |++-|.-.      -=.++|++.-|.
T Consensus       228 v~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence            999999999999999976 66666422      124677777773

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=3.9e-10  Score=116.48  Aligned_cols=189  Identities=32%  Similarity=0.437  Sum_probs=92.8

Q ss_pred             EEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCc-CCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCC
Q 043408           28 LNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLN-KLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSN  105 (492)
Q Consensus        28 L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~-~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~  105 (492)
                      ++++.+........+...++++.|++.+ ..+..+++.+..+. +|+.|+++++. +..+|..+ .+++|+.|++++| .
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~  174 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-D  174 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCC-cccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-h
Confidence            4444444333333333444555555544 33444444444443 55555555543 44443222 4555555555552 3


Q ss_pred             CcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccc
Q 043408          106 LMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIV  185 (492)
Q Consensus       106 l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~  185 (492)
                      +..+|...+.+++|+.|++++|. +..+|..+..+..|++|.+++|. ....+..+.++..+..+.+.++++..++..++
T Consensus       175 l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~  252 (394)
T COG4886         175 LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIG  252 (394)
T ss_pred             hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhc
Confidence            44444444455555555555532 33344444444445555555532 22333444555555555555555555555555


Q ss_pred             cCCCCcccccCCCc--CCccccCCCCCCcEEecCCCccc
Q 043408          186 CLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       186 ~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~  222 (492)
                      .+++|+.|++.++.  .++. ++.+.+++.|++++|.+.
T Consensus       253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence            55555555555554  2333 556666666666666543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.84  E-value=2.6e-10  Score=116.34  Aligned_cols=211  Identities=26%  Similarity=0.389  Sum_probs=134.4

Q ss_pred             EEEccCCCcccccccccC--CCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            4 SLEMPHSSIKQLWKGVQR--LVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         4 ~L~L~~s~i~~l~~~~~~--l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      +|.|++.+++..|.+-..  +.--...||+.|++.....++..+..|+.+.|.. .-+..+|..+.++..|.+|||+.|.
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhccch
Confidence            355666677766643322  3344567788877654333466777777777766 3456677788888888888888765


Q ss_pred             CCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccccc
Q 043408           82 SLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL  161 (492)
Q Consensus        82 ~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l  161 (492)
                       +..+|..+..--|+.|.+++ ++++.+|..++.+..|..||.+.|                         .+..+|..+
T Consensus       133 -lS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-------------------------ei~slpsql  185 (722)
T KOG0532|consen  133 -LSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-------------------------EIQSLPSQL  185 (722)
T ss_pred             -hhcCChhhhcCcceeEEEec-CccccCCcccccchhHHHhhhhhh-------------------------hhhhchHHh
Confidence             67777766444477777766 345555555555455555554443                         334455555


Q ss_pred             CCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhh---cCccccc
Q 043408          162 GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESII---CLSHLYW  236 (492)
Q Consensus       162 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~---~l~~L~~  236 (492)
                      +.+.+|+.|.+..|.+..+|..+..| .|..||++.|+  .+|-.|.+|..|+.|.|.+|.+.+-|..|.   ...=.++
T Consensus       186 ~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKy  264 (722)
T KOG0532|consen  186 GYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKY  264 (722)
T ss_pred             hhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeee
Confidence            55555555555555555555555533 35555665555  366778889999999999999998887553   3455688


Q ss_pred             ccccccc
Q 043408          237 LRISYCE  243 (492)
Q Consensus       237 L~L~~c~  243 (492)
                      |++.-|.
T Consensus       265 L~~qA~q  271 (722)
T KOG0532|consen  265 LSTQACQ  271 (722)
T ss_pred             ecchhcc
Confidence            8888884

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=4.4e-10  Score=111.48  Aligned_cols=182  Identities=21%  Similarity=0.193  Sum_probs=128.1

Q ss_pred             CceEEEccCCCccccc--ccccCCCCCcEEEccCCCCCCCCC---CCCCCCCccEEEeeCcccCcccccc-ccCCcCCcE
Q 043408            1 NLVSLEMPHSSIKQLW--KGVQRLVNLKHLNLSHSEHLTKIP---DLSLATNLESLTFRGCTSLLETHSS-IQYLNKLIV   74 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~--~~~~~l~~L~~L~Ls~~~~l~~~p---~l~~~~nL~~L~L~~c~~l~~~~~s-i~~L~~L~~   74 (492)
                      +|+++.|.++.+....  +-.+.|++++.||||+|-+..-.+   -...+++|+.|+|+.|...--..+. -..++.|+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            4778888888888666  356789999999999985543222   2567999999999986544322221 235789999


Q ss_pred             EeccCCCCCc-ccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCcc-ccccCCCCCCCEEeccCC
Q 043408           75 LNLEHCRSLT-SLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGL-PSKICKLKSLERLNLSGC  151 (492)
Q Consensus        75 L~L~~~~~l~-~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~c  151 (492)
                      |.|+.|..-. .+.... .+++|+.|++.+|..+.........+..|+.|||++|..+..- -..++.++.|..|+++.|
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence            9999997321 121111 7899999999998644433344556788999999998876532 245778899999999887


Q ss_pred             CCCC-Ccccc-----cCCccccccccccccccccccc
Q 043408          152 SNLQ-RLPNE-----LGNLEALKELKAEGIAIREVPS  182 (492)
Q Consensus       152 ~~l~-~lp~~-----l~~l~~L~~L~l~~~~i~~lp~  182 (492)
                      .... .+|+.     ....++|+.|++..|+|.+.++
T Consensus       282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s  318 (505)
T KOG3207|consen  282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS  318 (505)
T ss_pred             CcchhcCCCccchhhhcccccceeeecccCccccccc
Confidence            5432 23333     4567889999999998877654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.75  E-value=6.4e-09  Score=94.05  Aligned_cols=122  Identities=27%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             CCcEEEccCCCCCCCCCCCC-CCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc--CCCCCCEEEe
Q 043408           24 NLKHLNLSHSEHLTKIPDLS-LATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLIL  100 (492)
Q Consensus        24 ~L~~L~Ls~~~~l~~~p~l~-~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L  100 (492)
                      +++.|+|++|.+. .+..++ .+.+|+.|+|++|. +..+. .+..+++|+.|++++|. ++.+...+  .+++|++|++
T Consensus        20 ~~~~L~L~~n~I~-~Ie~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccc-cccchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEEC
Confidence            3444555444432 233333 24444455554432 22222 23344455555554443 33332211  3445555555


Q ss_pred             eCCCCCcccC--ccccCCCCCcEEEcccCCCCCc---cccccCCCCCCCEEeccC
Q 043408          101 SGCSNLMKLP--SSIERLSSLILLNLRNCSRLEG---LPSKICKLKSLERLNLSG  150 (492)
Q Consensus       101 ~~c~~l~~lp--~~i~~l~~L~~L~L~~~~~l~~---lp~~i~~l~~L~~L~Ls~  150 (492)
                      ++|. +..+.  ..+..+++|++|+|.+|+....   -...+..+++|+.||-..
T Consensus        96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             cCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            4432 22111  2345556666666666554321   112345566777776543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.74  E-value=2.2e-09  Score=101.87  Aligned_cols=125  Identities=27%  Similarity=0.227  Sum_probs=71.9

Q ss_pred             CCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccc
Q 043408           93 ESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKA  172 (492)
Q Consensus        93 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l  172 (492)
                      +.|+++++++ +.+..+..++.-+++++.|+++.|.....  ..+..+.+|+.|||++| .+.++...-.++.++++|.+
T Consensus       284 q~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccc-cchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence            3466666666 34555556666666666666666654432  12555666666666663 33333333334445566666


Q ss_pred             ccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccc--hhhhcCcccccccccccc
Q 043408          173 EGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIP--ESIICLSHLYWLRISYCE  243 (492)
Q Consensus       173 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~  243 (492)
                      ++|.|+.+                      ..++.+-+|..||+++|++..+-  ..|++++.|+.+.+.+|+
T Consensus       360 a~N~iE~L----------------------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  360 AQNKIETL----------------------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhhHhhh----------------------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            66666554                      24455566666677777666433  356667777777666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.63  E-value=2e-09  Score=104.21  Aligned_cols=226  Identities=16%  Similarity=0.132  Sum_probs=141.6

Q ss_pred             ccCCCCCcEEEccCCCCCCCC-----CCCCCCCCccEEEeeCc---ccCcccccc-------ccCCcCCcEEeccCCCCC
Q 043408           19 VQRLVNLKHLNLSHSEHLTKI-----PDLSLATNLESLTFRGC---TSLLETHSS-------IQYLNKLIVLNLEHCRSL   83 (492)
Q Consensus        19 ~~~l~~L~~L~Ls~~~~l~~~-----p~l~~~~nL~~L~L~~c---~~l~~~~~s-------i~~L~~L~~L~L~~~~~l   83 (492)
                      .-.+..++.|+||+|.+.++.     +.+...++|+..++++.   .-..++|+.       +...++|++||||+|-.-
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            345667777788877766542     23566667777777652   112234433       233457888888877532


Q ss_pred             cccC----Ccc-CCCCCCEEEeeCCCCCcc-------------cCccccCCCCCcEEEcccCCCCCc----cccccCCCC
Q 043408           84 TSLS----TSI-HLESLKTLILSGCSNLMK-------------LPSSIERLSSLILLNLRNCSRLEG----LPSKICKLK  141 (492)
Q Consensus        84 ~~lp----~~~-~l~~L~~L~L~~c~~l~~-------------lp~~i~~l~~L~~L~L~~~~~l~~----lp~~i~~l~  141 (492)
                      ...+    ..+ .+..|++|.|.+|..-..             .-.-+..-++|+++....|..-..    +...+...+
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            2221    112 577778888877754321             112245567788888777654321    223345567


Q ss_pred             CCCEEeccCCCCCCC----cccccCCccccccccccccccc-----ccccccccCCCCcccccCCCc-------CCcccc
Q 043408          142 SLERLNLSGCSNLQR----LPNELGNLEALKELKAEGIAIR-----EVPSSIVCLKNLGRLSFESFK-------ELPECL  205 (492)
Q Consensus       142 ~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~-------~lp~~l  205 (492)
                      .|+.+.++.|.....    +-..+..+++|+.||+.+|.++     .+...+..+++|+.|++++|.       .+-+.+
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            788888877654321    2345677888888888888765     344556777888888888875       122222


Q ss_pred             -CCCCCCcEEecCCCccc-----ccchhhhcCccccccccccccc
Q 043408          206 -GQLSSLRILFLDKNNFE-----RIPESIICLSHLYWLRISYCER  244 (492)
Q Consensus       206 -~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~~  244 (492)
                       ...++|+.|.+.+|.++     .+-.++...+.|+.|+|++|..
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence             34789999999999987     3445677788999999999763

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.60  E-value=4.6e-09  Score=99.66  Aligned_cols=98  Identities=27%  Similarity=0.278  Sum_probs=54.9

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      |++|||++|.|+++.++++-++++++|++|+|.+. .+..+..+++|+.|||++|. +.++...--.|-+++.|+|++|.
T Consensus       286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             hhhccccccchhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhh
Confidence            56677777777777777777777777777776643 33446666666666666632 33332222334455555555543


Q ss_pred             CCcccCCccCCCCCCEEEeeC
Q 043408           82 SLTSLSTSIHLESLKTLILSG  102 (492)
Q Consensus        82 ~l~~lp~~~~l~~L~~L~L~~  102 (492)
                       ++.+....++-+|..|++++
T Consensus       364 -iE~LSGL~KLYSLvnLDl~~  383 (490)
T KOG1259|consen  364 -IETLSGLRKLYSLVNLDLSS  383 (490)
T ss_pred             -HhhhhhhHhhhhheeccccc
Confidence             44443333444444444444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.59  E-value=4.2e-08  Score=88.74  Aligned_cols=43  Identities=21%  Similarity=0.312  Sum_probs=4.5

Q ss_pred             cccCCccCCCCCCEEEeeCCCCCcccCcccc-CCCCCcEEEcccCC
Q 043408           84 TSLSTSIHLESLKTLILSGCSNLMKLPSSIE-RLSSLILLNLRNCS  128 (492)
Q Consensus        84 ~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~L~~~~  128 (492)
                      +..+...+..++++|+|.|+. +..+ ..++ .+.+|+.|++++|.
T Consensus        10 ~~~~~~~n~~~~~~L~L~~n~-I~~I-e~L~~~l~~L~~L~Ls~N~   53 (175)
T PF14580_consen   10 EQIAQYNNPVKLRELNLRGNQ-ISTI-ENLGATLDKLEVLDLSNNQ   53 (175)
T ss_dssp             ----------------------------S--TT-TT--EEE-TTS-
T ss_pred             ccccccccccccccccccccc-cccc-cchhhhhcCCCEEECCCCC
Confidence            334443455556666666632 2222 1232 24445555555443

>PLN03150 hypothetical protein; Provisional

Probab=98.48  E-value=2.9e-07  Score=100.33  Aligned_cols=106  Identities=28%  Similarity=0.307  Sum_probs=85.7

Q ss_pred             CCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEecc
Q 043408           71 KLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLS  149 (492)
Q Consensus        71 ~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls  149 (492)
                      .++.|+|++|..-..+|..+ .+++|+.|+|++|...+.+|..++.+++|+.|+|++|...+.+|..++++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36778888876555666655 78889999998877777888889999999999999998888899989999999999999


Q ss_pred             CCCCCCCcccccCCc-cccccccccccc
Q 043408          150 GCSNLQRLPNELGNL-EALKELKAEGIA  176 (492)
Q Consensus       150 ~c~~l~~lp~~l~~l-~~L~~L~l~~~~  176 (492)
                      +|...+.+|..++.. .++..+++.+|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            988888888877653 356677777764

>PLN03150 hypothetical protein; Provisional

Probab=98.46  E-value=2.2e-07  Score=101.37  Aligned_cols=102  Identities=26%  Similarity=0.340  Sum_probs=66.9

Q ss_pred             CcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccc-ccccccccCCCCcccccCC
Q 043408          119 LILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR-EVPSSIVCLKNLGRLSFES  197 (492)
Q Consensus       119 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~  197 (492)
                      ++.|+|.+|...+.+|..++++++|+.|+|++|...+.+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            556666666666666666666666666666666666666666666666666666666665 5666666666666666666


Q ss_pred             Cc---CCccccCCC-CCCcEEecCCCc
Q 043408          198 FK---ELPECLGQL-SSLRILFLDKNN  220 (492)
Q Consensus       198 ~~---~lp~~l~~l-~~L~~L~L~~n~  220 (492)
                      |.   .+|..++.+ .++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            54   456555542 456778888886

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.45  E-value=5.9e-07  Score=91.04  Aligned_cols=64  Identities=30%  Similarity=0.542  Sum_probs=40.0

Q ss_pred             ccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccc
Q 043408           66 IQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLP  134 (492)
Q Consensus        66 i~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp  134 (492)
                      +..+.+++.|++++| .++.+|.  -..+|++|.+++|..+..+|..+.  ++|++|++++|..+..+|
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc
Confidence            444677888888877 4777763  234577777777777666665442  456666666655444444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.42  E-value=7.3e-07  Score=90.37  Aligned_cols=137  Identities=24%  Similarity=0.440  Sum_probs=93.5

Q ss_pred             ccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEE
Q 043408           19 VQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTL   98 (492)
Q Consensus        19 ~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L   98 (492)
                      +..+++++.|++++| .++.+|.  -..+|++|.+++|..+..+|..+.  .+|+.|++++|..+..+|.     +|+.|
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~-----sLe~L  117 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE-----SVRSL  117 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccCC--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc-----ccceE
Confidence            445789999999998 4566673  345799999999999988887663  6899999999987887775     57778


Q ss_pred             EeeCCC--CCcccCccccCCCCCcEEEcccCCCC--CccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccc
Q 043408           99 ILSGCS--NLMKLPSSIERLSSLILLNLRNCSRL--EGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEG  174 (492)
Q Consensus        99 ~L~~c~--~l~~lp~~i~~l~~L~~L~L~~~~~l--~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~  174 (492)
                      ++.++.  .+..+|+      +|+.|.+.++...  ..+|..  -.++|++|++++|.... +|..+.  .+|+.|+++.
T Consensus       118 ~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        118 EIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHI  186 (426)
T ss_pred             EeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEEecc
Confidence            876532  3455665      4556666543211  111211  12589999999987553 444333  4788888876


Q ss_pred             cc
Q 043408          175 IA  176 (492)
Q Consensus       175 ~~  176 (492)
                      +.
T Consensus       187 n~  188 (426)
T PRK15386        187 EQ  188 (426)
T ss_pred             cc
Confidence            53

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=6.7e-09  Score=98.54  Aligned_cols=174  Identities=26%  Similarity=0.311  Sum_probs=118.6

Q ss_pred             ceEEEccCCCcc--cccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccc--cccCCcCCcEEe
Q 043408            2 LVSLEMPHSSIK--QLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHS--SIQYLNKLIVLN   76 (492)
Q Consensus         2 L~~L~L~~s~i~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~--si~~L~~L~~L~   76 (492)
                      |++|||+++.|+  ++-.-+..|.+|+.|.|.+++.-..+- .+.+-.+|+.|+|++|..+.+..-  -+.++..|..||
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            677888888887  555566778889999888876544332 377788999999999888776432  246788899999


Q ss_pred             ccCCCCCcccCCcc---CCCCCCEEEeeCCCCCc---ccCccccCCCCCcEEEcccCCCCCc-cccccCCCCCCCEEecc
Q 043408           77 LEHCRSLTSLSTSI---HLESLKTLILSGCSNLM---KLPSSIERLSSLILLNLRNCSRLEG-LPSKICKLKSLERLNLS  149 (492)
Q Consensus        77 L~~~~~l~~lp~~~---~l~~L~~L~L~~c~~l~---~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~Ls  149 (492)
                      |+.|...+.....+   --++|..|+++||...-   .+..-...+++|.+|||++|..+.. .-..+.+++.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            98886443322111   34678888998875422   1222246788999999998876653 33456678889999998


Q ss_pred             CCCCCC-CcccccCCcccccccccccc
Q 043408          150 GCSNLQ-RLPNELGNLEALKELKAEGI  175 (492)
Q Consensus       150 ~c~~l~-~lp~~l~~l~~L~~L~l~~~  175 (492)
                      .|..+- ..--.++.+++|..|++.|+
T Consensus       347 RCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  347 RCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhcCCChHHeeeeccCcceEEEEeccc
Confidence            886542 11124566777777776654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.38  E-value=5.6e-08  Score=94.35  Aligned_cols=219  Identities=18%  Similarity=0.193  Sum_probs=136.4

Q ss_pred             ceEEEccCCCcc-----cccccccCCCCCcEEEccCCCCCC----CCC--------CCCCCCCccEEEeeCcccCccccc
Q 043408            2 LVSLEMPHSSIK-----QLWKGVQRLVNLKHLNLSHSEHLT----KIP--------DLSLATNLESLTFRGCTSLLETHS   64 (492)
Q Consensus         2 L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~----~~p--------~l~~~~nL~~L~L~~c~~l~~~~~   64 (492)
                      +++|+|++|.+.     .+-..+.+.++|+..++|+- ++.    ++|        .+..++.|++|+|++|..-..-+.
T Consensus        32 ~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~  110 (382)
T KOG1909|consen   32 LTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR  110 (382)
T ss_pred             eEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence            578889988875     34456667778888888763 222    222        245567888888888754433332


Q ss_pred             ----cccCCcCCcEEeccCCCCCcc-------------cCCcc-CCCCCCEEEeeCCCCCc----ccCccccCCCCCcEE
Q 043408           65 ----SIQYLNKLIVLNLEHCRSLTS-------------LSTSI-HLESLKTLILSGCSNLM----KLPSSIERLSSLILL  122 (492)
Q Consensus        65 ----si~~L~~L~~L~L~~~~~l~~-------------lp~~~-~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L  122 (492)
                          -+.++..|++|.|.+|..-..             ..... .-+.||++...+|..-.    .+...+...+.|+.+
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev  190 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV  190 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence                345577788888887752110             00111 45678888777643221    233345666778888


Q ss_pred             EcccCCCCCc----cccccCCCCCCCEEeccCCCCCC----CcccccCCcccccccccccccccc-----ccccc-ccCC
Q 043408          123 NLRNCSRLEG----LPSKICKLKSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIRE-----VPSSI-VCLK  188 (492)
Q Consensus       123 ~L~~~~~l~~----lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~-----lp~~~-~~l~  188 (492)
                      .+..|.....    +-..+.++++|+.|||.+|....    .+-..+..+++|+.|++++|.++.     +-..+ ...+
T Consensus       191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p  270 (382)
T KOG1909|consen  191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP  270 (382)
T ss_pred             EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence            8777654431    23445677888888888765542    234456667778888888776651     11111 3367


Q ss_pred             CCcccccCCCcC-------CccccCCCCCCcEEecCCCcc
Q 043408          189 NLGRLSFESFKE-------LPECLGQLSSLRILFLDKNNF  221 (492)
Q Consensus       189 ~L~~L~l~~~~~-------lp~~l~~l~~L~~L~L~~n~l  221 (492)
                      +|+.|.+.+|..       +-..+...+.|+.|+|++|++
T Consensus       271 ~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  271 SLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            788888887762       233455688999999999998

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.32  E-value=8.2e-08  Score=99.83  Aligned_cols=214  Identities=28%  Similarity=0.281  Sum_probs=124.8

Q ss_pred             CCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEe
Q 043408           21 RLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLIL  100 (492)
Q Consensus        21 ~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L  100 (492)
                      .+..++.++++.+.+......+..+.+|+.|++.+ ..+..+...+..+++|++|++++|. ++.+...-.++.|+.|++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNL  147 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccccc-cccccchhhccchhhhee
Confidence            34556666666665444344466777777777776 3444444446667777777777765 555555446666777777


Q ss_pred             eCCCCCcccCccccCCCCCcEEEcccCCCCCccc-cccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccc
Q 043408          101 SGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLP-SKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIRE  179 (492)
Q Consensus       101 ~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~  179 (492)
                      .+|.. ..+ ..+..++.|+.+++++|.....-+ . ...+..++.+++.+|....  .+.+..+..+..+++..|.+..
T Consensus       148 ~~N~i-~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  148 SGNLI-SDI-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             ccCcc-hhc-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccccee
Confidence            77532 222 234447777777777766544333 1 3566777777777754332  1233334445555666666654


Q ss_pred             cccccccCCC--CcccccCCCcC--CccccCCCCCCcEEecCCCcccccchhhhcCcccccccccccc
Q 043408          180 VPSSIVCLKN--LGRLSFESFKE--LPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCE  243 (492)
Q Consensus       180 lp~~~~~l~~--L~~L~l~~~~~--lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~  243 (492)
                      +-. +..+..  |+.+.+.++..  ++..+..+..+..|++.+|.+..+. .+.....+..+....++
T Consensus       223 ~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~  288 (414)
T KOG0531|consen  223 LEG-LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNK  288 (414)
T ss_pred             ccC-cccchhHHHHHHhcccCccccccccccccccccccchhhccccccc-cccccchHHHhccCcch
Confidence            422 222222  66667666552  3356777788888888888766443 24444555555555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.31  E-value=3.6e-08  Score=97.63  Aligned_cols=265  Identities=21%  Similarity=0.273  Sum_probs=143.2

Q ss_pred             ceEEEccCCCcc---cccccccCCCCCcEEEccCCCCCCCCC--CC-CCCCCccEEEeeCcccCccccc--cccCCcCCc
Q 043408            2 LVSLEMPHSSIK---QLWKGVQRLVNLKHLNLSHSEHLTKIP--DL-SLATNLESLTFRGCTSLLETHS--SIQYLNKLI   73 (492)
Q Consensus         2 L~~L~L~~s~i~---~l~~~~~~l~~L~~L~Ls~~~~l~~~p--~l-~~~~nL~~L~L~~c~~l~~~~~--si~~L~~L~   73 (492)
                      |++|+++++.=.   .+-.....+++++.|++.+|..++...  .+ ..+++|++|+|..|..++..--  -...+++|+
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            566777665432   344455668888888888887555432  12 3467888888888877665321  123477888


Q ss_pred             EEeccCCCCCcc--cCCcc-CCCCCCEEEeeCCCCCcc--cCccccCCCCCcEEEcccCCCCCcc--ccccCCCCCCCEE
Q 043408           74 VLNLEHCRSLTS--LSTSI-HLESLKTLILSGCSNLMK--LPSSIERLSSLILLNLRNCSRLEGL--PSKICKLKSLERL  146 (492)
Q Consensus        74 ~L~L~~~~~l~~--lp~~~-~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L  146 (492)
                      +|+++.|..+..  +.... +++.++.+.+.||...+.  +-..=.++.-+..+++..|..+...  -..-..+..|+.|
T Consensus       220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l  299 (483)
T KOG4341|consen  220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL  299 (483)
T ss_pred             HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence            888888876554  11111 556677776667654431  1111133344555555555444321  1122345566777


Q ss_pred             eccCCCCCCCccc-c-cCCcccccccccccccc-c--ccccccccCCCCcccccCCCcCCcc-----ccCCCCCCcEEec
Q 043408          147 NLSGCSNLQRLPN-E-LGNLEALKELKAEGIAI-R--EVPSSIVCLKNLGRLSFESFKELPE-----CLGQLSSLRILFL  216 (492)
Q Consensus       147 ~Ls~c~~l~~lp~-~-l~~l~~L~~L~l~~~~i-~--~lp~~~~~l~~L~~L~l~~~~~lp~-----~l~~l~~L~~L~L  216 (492)
                      +.++|...+..+- . -....+|+.|-+.+++. .  .+...-.+.+.|+.+++.++..+.+     .-.+++.|+.|.|
T Consensus       300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsl  379 (483)
T KOG4341|consen  300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSL  379 (483)
T ss_pred             cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCCh
Confidence            7776665443221 1 23456666666666542 1  1111123456666677666653322     2245677777777


Q ss_pred             CCCc-cccc-----chhhhcCccccccccccccccccCC----CCCcccceeeccccccc
Q 043408          217 DKNN-FERI-----PESIICLSHLYWLRISYCERLKSLP----ELPCDLSDIEAHCCSSL  266 (492)
Q Consensus       217 ~~n~-l~~l-----p~~l~~l~~L~~L~L~~c~~l~~lp----~l~~sL~~L~~~~C~~L  266 (492)
                      ++|. ++..     ...-..+..|..|.+++|+.+..--    ....+|+.+++.+|...
T Consensus       380 shce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  380 SHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV  439 (483)
T ss_pred             hhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence            7776 3311     2222345677788888887654311    01234555555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=2.9e-08  Score=94.33  Aligned_cols=171  Identities=23%  Similarity=0.258  Sum_probs=127.9

Q ss_pred             CCCEEEeeCCCCCc-ccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcc--cccCCccccccc
Q 043408           94 SLKTLILSGCSNLM-KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP--NELGNLEALKEL  170 (492)
Q Consensus        94 ~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L  170 (492)
                      .|+.|||++..... .+...+..+.+|+.|.|.++..-..+-..|..-.+|+.|++++|+......  -.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            48889998844332 233446789999999999998888888889999999999999998876532  346889999999


Q ss_pred             ccccccccc--ccccccc-CCCCcccccCCCcC------CccccCCCCCCcEEecCCCc-cc-ccchhhhcCcccccccc
Q 043408          171 KAEGIAIRE--VPSSIVC-LKNLGRLSFESFKE------LPECLGQLSSLRILFLDKNN-FE-RIPESIICLSHLYWLRI  239 (492)
Q Consensus       171 ~l~~~~i~~--lp~~~~~-l~~L~~L~l~~~~~------lp~~l~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L  239 (492)
                      +++.|.+..  +...+.. -++|..|+++|+..      +..-...+++|.+|||++|. ++ ..-..+.++..|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            999987641  1111111 24778889988763      22234678999999999998 55 45567888999999999


Q ss_pred             ccccccccCCC------CCcccceeeccccccc
Q 043408          240 SYCERLKSLPE------LPCDLSDIEAHCCSSL  266 (492)
Q Consensus       240 ~~c~~l~~lp~------l~~sL~~L~~~~C~~L  266 (492)
                      +.|..+  +|+      ..++|.+|++.+|-+=
T Consensus       346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  346 SRCYDI--IPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             hhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence            999754  232      2578999999998653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.25  E-value=1.3e-07  Score=98.35  Aligned_cols=193  Identities=31%  Similarity=0.317  Sum_probs=132.8

Q ss_pred             CCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCC-ccCCCCCCEEEeeCCCCCcccCccccCCCCCcE
Q 043408           43 SLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLST-SIHLESLKTLILSGCSNLMKLPSSIERLSSLIL  121 (492)
Q Consensus        43 ~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~-~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~  121 (492)
                      ..+..++.+++..+ .+..+-..+..+.+|+.|++.+|. ++.+.. .-.+++|++|+++++. +..+ ..+..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKL-EGLSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchh-hhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-cccc-cchhhccchhh
Confidence            45677777777663 334444457789999999999976 666666 3479999999999954 4433 34677788999


Q ss_pred             EEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc-cCCcccccccccccccccccccccccCCCCcccccCCCcC
Q 043408          122 LNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKE  200 (492)
Q Consensus       122 L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~  200 (492)
                      |++.+|.....  ..+..+++|+.+++++|.... +... +..+.+++.+++.+|.+..+.. +..+..+..+++..+.-
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccc-hHHHHHHHHhhcccccc
Confidence            99999875432  234458899999999975443 3222 5788899999999998886532 22333333344444331


Q ss_pred             -CccccCCCCC--CcEEecCCCcccccchhhhcCcccccccccccc
Q 043408          201 -LPECLGQLSS--LRILFLDKNNFERIPESIICLSHLYWLRISYCE  243 (492)
Q Consensus       201 -lp~~l~~l~~--L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~  243 (492)
                       --..+..+..  |+.+++++|.+..++..+..+..+..|++.+++
T Consensus       221 ~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~  266 (414)
T KOG0531|consen  221 SKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR  266 (414)
T ss_pred             eeccCcccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence             1122333333  889999999988887777888888888888754

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.21  E-value=1.1e-06  Score=65.21  Aligned_cols=57  Identities=28%  Similarity=0.396  Sum_probs=39.9

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcc
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCT   57 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~   57 (492)
                      +|++|+|++|+|+.++ ..+..+++|++|++++|.+....++ |.++++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4677788888787777 4566777888888877766443333 6777777777777753

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.94  E-value=5.2e-06  Score=61.50  Aligned_cols=58  Identities=31%  Similarity=0.390  Sum_probs=32.6

Q ss_pred             CCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCC
Q 043408           93 ESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGC  151 (492)
Q Consensus        93 ~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c  151 (492)
                      ++|++|++++| .+..+|. .+.++++|++|++++|.....-|..+.++++|++|++++|
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            35666666664 4444443 4566666666666655554444445556666666666554

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.86  E-value=1.1e-06  Score=87.35  Aligned_cols=229  Identities=19%  Similarity=0.205  Sum_probs=149.9

Q ss_pred             ccCCCCCcEEEccCCCCCCCCC--C-CCCCCCccEEEeeCcccCcc--ccccccCCcCCcEEeccCCCCCcc--cCCc-c
Q 043408           19 VQRLVNLKHLNLSHSEHLTKIP--D-LSLATNLESLTFRGCTSLLE--THSSIQYLNKLIVLNLEHCRSLTS--LSTS-I   90 (492)
Q Consensus        19 ~~~l~~L~~L~Ls~~~~l~~~p--~-l~~~~nL~~L~L~~c~~l~~--~~~si~~L~~L~~L~L~~~~~l~~--lp~~-~   90 (492)
                      -..+++|++|+|-.|..++...  . ...+++|++|++++|..+..  +-.-...+++++.+.+++|..++.  +-.. .
T Consensus       186 a~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~  265 (483)
T KOG4341|consen  186 ARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAA  265 (483)
T ss_pred             HHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhc
Confidence            3568899999998876665422  1 34688999999999876654  212234456677777778765431  1110 1


Q ss_pred             CCCCCCEEEeeCCCCCcccCc--cccCCCCCcEEEcccCCCCCccc--cccCCCCCCCEEeccCCCCCCCcc--cccCCc
Q 043408           91 HLESLKTLILSGCSNLMKLPS--SIERLSSLILLNLRNCSRLEGLP--SKICKLKSLERLNLSGCSNLQRLP--NELGNL  164 (492)
Q Consensus        91 ~l~~L~~L~L~~c~~l~~lp~--~i~~l~~L~~L~L~~~~~l~~lp--~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l  164 (492)
                      .+.-+.++++..|..+....-  .-.++..|++|+.++|......+  .-..+..+|+.|.+++|...+..-  ..-.++
T Consensus       266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~  345 (483)
T KOG4341|consen  266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC  345 (483)
T ss_pred             cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence            455566677777765553321  12457788888888887765432  123456788899998887655432  122466


Q ss_pred             cccccccccccccc---ccccccccCCCCcccccCCCcCCccc--------cCCCCCCcEEecCCCccc--ccchhhhcC
Q 043408          165 EALKELKAEGIAIR---EVPSSIVCLKNLGRLSFESFKELPEC--------LGQLSSLRILFLDKNNFE--RIPESIICL  231 (492)
Q Consensus       165 ~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~lp~~--------l~~l~~L~~L~L~~n~l~--~lp~~l~~l  231 (492)
                      ..|+.+++.++...   .+-....+++.|+.|+++.|..+.+.        -..+..|+.|.|+++...  ..-+.+..+
T Consensus       346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c  425 (483)
T KOG4341|consen  346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC  425 (483)
T ss_pred             hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence            78888888776543   23334467788999999888755432        245667888999999854  444577788


Q ss_pred             cccccccccccccccc
Q 043408          232 SHLYWLRISYCERLKS  247 (492)
Q Consensus       232 ~~L~~L~L~~c~~l~~  247 (492)
                      ++|+.+++-+|.....
T Consensus       426 ~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  426 RNLERIELIDCQDVTK  441 (483)
T ss_pred             cccceeeeechhhhhh
Confidence            8999999998876543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.72  E-value=1.7e-06  Score=91.24  Aligned_cols=111  Identities=24%  Similarity=0.171  Sum_probs=49.8

Q ss_pred             ccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccC
Q 043408          108 KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCL  187 (492)
Q Consensus       108 ~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l  187 (492)
                      .+..++.-++.|+.|+|+.|+....-  .+..++.|+.|||+.| .+..+|..-..-..|+.|.+.+|.++.+       
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN~l~tL-------  247 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNNALTTL-------  247 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheeeeecccHHHhh-------
Confidence            33444444455555555554433321  3344444555555542 3333332211112244555555544443       


Q ss_pred             CCCcccccCCCcCCccccCCCCCCcEEecCCCcccccc--hhhhcCcccccccccccc
Q 043408          188 KNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIP--ESIICLSHLYWLRISYCE  243 (492)
Q Consensus       188 ~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~  243 (492)
                                     .++.++.+|+.||++.|-+....  ..+..|..|+.|+|.+|+
T Consensus       248 ---------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  248 ---------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             ---------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence                           23445555555555555544211  134445555666665554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.69  E-value=7.1e-07  Score=93.97  Aligned_cols=85  Identities=38%  Similarity=0.337  Sum_probs=35.2

Q ss_pred             ccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCcc-ccCCCCCcEEEcccCCCCCccccccCCC
Q 043408           62 THSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSS-IERLSSLILLNLRNCSRLEGLPSKICKL  140 (492)
Q Consensus        62 ~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~l  140 (492)
                      +..++.-++.|+.|||++|+ +........++.|++|||++| .+..+|.. ...+. |+.|.+++|....-  ..+.+|
T Consensus       179 mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~L  253 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENL  253 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHHhh--hhHHhh
Confidence            33344444455555555544 222222124555555555542 23333322 12222 55555554432221  123445


Q ss_pred             CCCCEEeccCC
Q 043408          141 KSLERLNLSGC  151 (492)
Q Consensus       141 ~~L~~L~Ls~c  151 (492)
                      ++|+.||++.|
T Consensus       254 ksL~~LDlsyN  264 (1096)
T KOG1859|consen  254 KSLYGLDLSYN  264 (1096)
T ss_pred             hhhhccchhHh
Confidence            55555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.61  E-value=3.7e-05  Score=52.79  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=32.6

Q ss_pred             CCCcEEecCCCcccccchhhhcCccccccccccccccccCCC
Q 043408          209 SSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPE  250 (492)
Q Consensus       209 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~  250 (492)
                      ++|++|++++|+++.+|..+.++++|+.|++++|+ +++++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence            47899999999999999889999999999999974 555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.41  E-value=0.00014  Score=49.90  Aligned_cols=35  Identities=34%  Similarity=0.453  Sum_probs=25.1

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEH   35 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~   35 (492)
                      +|++|++++|+|+.++..+..|++|+.|++++|.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            57778888888887776677788888888877754

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.39  E-value=6.7e-05  Score=82.24  Aligned_cols=131  Identities=25%  Similarity=0.245  Sum_probs=77.2

Q ss_pred             CCccEEEeeCcccCcc-cccccc-CCcCCcEEeccCCCCCc-ccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcE
Q 043408           46 TNLESLTFRGCTSLLE-THSSIQ-YLNKLIVLNLEHCRSLT-SLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLIL  121 (492)
Q Consensus        46 ~nL~~L~L~~c~~l~~-~~~si~-~L~~L~~L~L~~~~~l~-~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~  121 (492)
                      .+|++|+++|.+.+.. .+..++ .||.|+.|.+++-.... .+.... ++++|+.||+++++ +..+ ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence            5778888877544422 333444 36788888777622111 111111 67888888888854 3333 56778888888


Q ss_pred             EEcccCCCCC-ccccccCCCCCCCEEeccCCCCCCCc--c----cccCCccccccccccccccc
Q 043408          122 LNLRNCSRLE-GLPSKICKLKSLERLNLSGCSNLQRL--P----NELGNLEALKELKAEGIAIR  178 (492)
Q Consensus       122 L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~c~~l~~l--p----~~l~~l~~L~~L~l~~~~i~  178 (492)
                      |.+.+-.... ..-..+.+|++|+.||+|.-.....-  .    +.-..+++|+.||.++|.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            8777643332 22234677888888888874332211  1    12234677888888877654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.36  E-value=7.4e-05  Score=81.90  Aligned_cols=104  Identities=21%  Similarity=0.286  Sum_probs=43.4

Q ss_pred             CCCCEEEeeCCCCCc-ccCcccc-CCCCCcEEEcccCCCCC-ccccccCCCCCCCEEeccCCCCCCCcccccCCcccccc
Q 043408           93 ESLKTLILSGCSNLM-KLPSSIE-RLSSLILLNLRNCSRLE-GLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKE  169 (492)
Q Consensus        93 ~~L~~L~L~~c~~l~-~lp~~i~-~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~  169 (492)
                      .+|+.|+++|..... ..|..++ .+|+|+.|.+.+-.... .+-.-..++++|..||+|+++ +..+ ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence            455666665532221 1122222 24555555555422111 112223344555555555532 2222 34445555555


Q ss_pred             cccccccccccc--cccccCCCCcccccCCC
Q 043408          170 LKAEGIAIREVP--SSIVCLKNLGRLSFESF  198 (492)
Q Consensus       170 L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~  198 (492)
                      |.+.+-.++.-.  ..+.+|++|+.||++..
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            554444333211  23344555555555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=4.9e-05  Score=72.73  Aligned_cols=78  Identities=26%  Similarity=0.295  Sum_probs=38.9

Q ss_pred             eEEEccCCCccc---ccccccCCCCCcEEEccCCCCCCCCCCC-CCCCCccEEEeeCcc-cCccccccccCCcCCcEEec
Q 043408            3 VSLEMPHSSIKQ---LWKGVQRLVNLKHLNLSHSEHLTKIPDL-SLATNLESLTFRGCT-SLLETHSSIQYLNKLIVLNL   77 (492)
Q Consensus         3 ~~L~L~~s~i~~---l~~~~~~l~~L~~L~Ls~~~~l~~~p~l-~~~~nL~~L~L~~c~-~l~~~~~si~~L~~L~~L~L   77 (492)
                      ++|||.+|.|..   +-.-+.+++.|++|+|+.|.....+..+ ....||+.|.|.|.. .....-.++..+++++.|.+
T Consensus        74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm  153 (418)
T KOG2982|consen   74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM  153 (418)
T ss_pred             hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence            456666666652   2222345666666666666554333222 244566666665521 11223334445555555555


Q ss_pred             cCC
Q 043408           78 EHC   80 (492)
Q Consensus        78 ~~~   80 (492)
                      +.|
T Consensus       154 S~N  156 (418)
T KOG2982|consen  154 SDN  156 (418)
T ss_pred             ccc
Confidence            554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.28  E-value=4.1e-05  Score=80.70  Aligned_cols=130  Identities=32%  Similarity=0.380  Sum_probs=83.7

Q ss_pred             CCCCCcEEEccCCCCCCCC---CCCCCCCCccEEEeeCc-ccCcccc----ccccCCcCCcEEeccCCCCCcccCCcc--
Q 043408           21 RLVNLKHLNLSHSEHLTKI---PDLSLATNLESLTFRGC-TSLLETH----SSIQYLNKLIVLNLEHCRSLTSLSTSI--   90 (492)
Q Consensus        21 ~l~~L~~L~Ls~~~~l~~~---p~l~~~~nL~~L~L~~c-~~l~~~~----~si~~L~~L~~L~L~~~~~l~~lp~~~--   90 (492)
                      .+++|+.+.+.++......   +....+++|+.|++++| ......+    .....+++|+.|+++.|..+....-..  
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            4788899999888766652   34677899999999883 3322222    223456889999999887544322111  


Q ss_pred             -CCCCCCEEEeeCCCCCc--ccCccccCCCCCcEEEcccCCCCCc--cccccCCCCCCCEEeccC
Q 043408           91 -HLESLKTLILSGCSNLM--KLPSSIERLSSLILLNLRNCSRLEG--LPSKICKLKSLERLNLSG  150 (492)
Q Consensus        91 -~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~Ls~  150 (492)
                       .+++|++|.+.+|..+.  .+-.....++.|++|+++.|..+..  +.....++++|+.|.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence             47899999988887543  2333456788899999998887632  222233455555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.00044  Score=66.39  Aligned_cols=160  Identities=22%  Similarity=0.214  Sum_probs=91.3

Q ss_pred             CCCCCCEEEeeCCCCCc--ccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC-CCcccccCCcccc
Q 043408           91 HLESLKTLILSGCSNLM--KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL-QRLPNELGNLEAL  167 (492)
Q Consensus        91 ~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l-~~lp~~l~~l~~L  167 (492)
                      ..+.+++|+|.+|....  ++...+.+++.|+.|+|+.|.....+-..-..+.+|+.|.|.|.... ......+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            46677777777754322  34445677888888888877654332211134567778877764321 1233345555666


Q ss_pred             ccccccccccccc----------cccc--------------------ccCCCCcccccCCCc----CCccccCCCCCCcE
Q 043408          168 KELKAEGIAIREV----------PSSI--------------------VCLKNLGRLSFESFK----ELPECLGQLSSLRI  213 (492)
Q Consensus       168 ~~L~l~~~~i~~l----------p~~~--------------------~~l~~L~~L~l~~~~----~lp~~l~~l~~L~~  213 (492)
                      +.|.++.|+.+++          ...+                    ..++++..+-+..|.    .--.....++.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            6666665543321          1100                    112233333333331    11223455677778


Q ss_pred             EecCCCcccccc--hhhhcCccccccccccccccccCCC
Q 043408          214 LFLDKNNFERIP--ESIICLSHLYWLRISYCERLKSLPE  250 (492)
Q Consensus       214 L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~lp~  250 (492)
                      |+|+.|++.++-  +.+..++.|..|.+++++....+..
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence            889988887543  5788889999999998887766654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.10  E-value=9.4e-05  Score=77.98  Aligned_cols=111  Identities=32%  Similarity=0.465  Sum_probs=58.0

Q ss_pred             CCCCccEEEeeCcccCcc--ccccccCCcCCcEEeccCC-CCCcccC-----CccCCCCCCEEEeeCCCCCcccC-ccc-
Q 043408           44 LATNLESLTFRGCTSLLE--THSSIQYLNKLIVLNLEHC-RSLTSLS-----TSIHLESLKTLILSGCSNLMKLP-SSI-  113 (492)
Q Consensus        44 ~~~nL~~L~L~~c~~l~~--~~~si~~L~~L~~L~L~~~-~~l~~lp-----~~~~l~~L~~L~L~~c~~l~~lp-~~i-  113 (492)
                      ..++|+.|.+.+|..+..  +-......++|+.|++++| ......+     ....+.+|+.|++++|..+.... ..+ 
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356677777777666655  3344455667777777662 2222111     01145666677776665433211 122 


Q ss_pred             cCCCCCcEEEcccCCCCC--ccccccCCCCCCCEEeccCCCCC
Q 043408          114 ERLSSLILLNLRNCSRLE--GLPSKICKLKSLERLNLSGCSNL  154 (492)
Q Consensus       114 ~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~c~~l  154 (492)
                      ..+++|++|.+.+|..+.  .+-.....+++|++|++++|...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            235666776666665321  12222334556666666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.09  E-value=5.1e-05  Score=64.74  Aligned_cols=81  Identities=20%  Similarity=0.235  Sum_probs=49.7

Q ss_pred             Cccccccccccccccccccccccc-CCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCcccccccc
Q 043408          163 NLEALKELKAEGIAIREVPSSIVC-LKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRI  239 (492)
Q Consensus       163 ~l~~L~~L~l~~~~i~~lp~~~~~-l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L  239 (492)
                      ....|+..+|++|.+.++|..+.. ++.++.|++.++.  ++|..+..++.|+.|+++.|.+...|..+..+.+|-.|+.
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence            334445555555555555554432 2344455555443  4555667777788888888888877777777777777776


Q ss_pred             cccc
Q 043408          240 SYCE  243 (492)
Q Consensus       240 ~~c~  243 (492)
                      .++.
T Consensus       131 ~~na  134 (177)
T KOG4579|consen  131 PENA  134 (177)
T ss_pred             CCCc
Confidence            6654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.09  E-value=0.0013  Score=59.86  Aligned_cols=95  Identities=18%  Similarity=0.284  Sum_probs=47.2

Q ss_pred             EEEccCCCcccccccccC-CCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCcccccccc-CCcCCcEEeccCCC
Q 043408            4 SLEMPHSSIKQLWKGVQR-LVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQ-YLNKLIVLNLEHCR   81 (492)
Q Consensus         4 ~L~L~~s~i~~l~~~~~~-l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~-~L~~L~~L~L~~~~   81 (492)
                      +++|++.++..+-. ++. +.....+||++|.+ ..++.|..++.|.+|.|.+| .+..+.+.+. .+++|..|.|.+|.
T Consensus        23 e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl-~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   23 ELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDL-RKLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             ccccccccccchhh-ccccccccceecccccch-hhcccCCCccccceEEecCC-cceeeccchhhhccccceEEecCcc
Confidence            45555555544422 221 34455666766653 34555666666666666553 3334433333 34556666666554


Q ss_pred             CCccc---CCccCCCCCCEEEeeC
Q 043408           82 SLTSL---STSIHLESLKTLILSG  102 (492)
Q Consensus        82 ~l~~l---p~~~~l~~L~~L~L~~  102 (492)
                       +..+   -....+++|+.|.+-+
T Consensus       100 -i~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen  100 -IQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             -hhhhhhcchhccCCccceeeecC
Confidence             2222   2222445555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.99  E-value=0.00038  Score=65.97  Aligned_cols=173  Identities=18%  Similarity=0.193  Sum_probs=85.2

Q ss_pred             ceEEEccCCCcc-----cccccccCCCCCcEEEccCCCCCCC------------CCCCCCCCCccEEEeeCcccCccccc
Q 043408            2 LVSLEMPHSSIK-----QLWKGVQRLVNLKHLNLSHSEHLTK------------IPDLSLATNLESLTFRGCTSLLETHS   64 (492)
Q Consensus         2 L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~~------------~p~l~~~~nL~~L~L~~c~~l~~~~~   64 (492)
                      +++++|++|.|.     .+...+.+-++|+..++++-. +..            .+.+.++|.|+..+|+.|......|+
T Consensus        32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            577888888875     233445555666666665521 111            12345566666666666655444443


Q ss_pred             c----ccCCcCCcEEeccCCCCCcccCC---------------ccCCCCCCEEEeeCCCCCcccC-----ccccCCCCCc
Q 043408           65 S----IQYLNKLIVLNLEHCRSLTSLST---------------SIHLESLKTLILSGCSNLMKLP-----SSIERLSSLI  120 (492)
Q Consensus        65 s----i~~L~~L~~L~L~~~~~l~~lp~---------------~~~l~~L~~L~L~~c~~l~~lp-----~~i~~l~~L~  120 (492)
                      .    |.+-..|++|.|++|. +.-+..               ..+-+.|++.....|. +...+     ..+..-.+|+
T Consensus       111 ~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHENLK  188 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcCce
Confidence            2    3344566666666654 221110               0134556666555532 22111     1122234566


Q ss_pred             EEEcccCCCCCc-----cccccCCCCCCCEEeccCCCCCCC----cccccCCcccccccccccccc
Q 043408          121 LLNLRNCSRLEG-----LPSKICKLKSLERLNLSGCSNLQR----LPNELGNLEALKELKAEGIAI  177 (492)
Q Consensus       121 ~L~L~~~~~l~~-----lp~~i~~l~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~l~~~~i  177 (492)
                      ++.+..|.+...     +--.+..+.+|+.|||..|.....    +-..+..++.|+.|.+.+|-+
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence            666666543321     001223456666666666544321    223344555667776666643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.75  E-value=0.00045  Score=65.51  Aligned_cols=190  Identities=21%  Similarity=0.193  Sum_probs=93.6

Q ss_pred             CCCCCCccEEEeeCcccCcc----ccccccCCcCCcEEeccCCCC--C-ccc--------CCccCCCCCCEEEeeCCCCC
Q 043408           42 LSLATNLESLTFRGCTSLLE----THSSIQYLNKLIVLNLEHCRS--L-TSL--------STSIHLESLKTLILSGCSNL  106 (492)
Q Consensus        42 l~~~~nL~~L~L~~c~~l~~----~~~si~~L~~L~~L~L~~~~~--l-~~l--------p~~~~l~~L~~L~L~~c~~l  106 (492)
                      +..+..+..++|+||+..++    +...|.+-.+|+..++++--.  . ..+        +...++++|++.+|+.|..-
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            44577888888988876554    334455667788887765210  0 011        11226677777777765544


Q ss_pred             cccCc----cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccccccc
Q 043408          107 MKLPS----SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPS  182 (492)
Q Consensus       107 ~~lp~----~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~  182 (492)
                      .+.|.    .|++-+.|++|.|.+|..--.-...|++  .|..  |..+.       -..+-+.|+......|++...|.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~nK-------Kaa~kp~Le~vicgrNRlengs~  174 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYNK-------KAADKPKLEVVICGRNRLENGSK  174 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHHh-------hhccCCCceEEEeccchhccCcH
Confidence            33332    2455566666666665432110000110  0000  00000       01122345555555555543332


Q ss_pred             c-----cccCCCCcccccCCCcCCcc--------ccCCCCCCcEEecCCCcccc-----cchhhhcCccccccccccc
Q 043408          183 S-----IVCLKNLGRLSFESFKELPE--------CLGQLSSLRILFLDKNNFER-----IPESIICLSHLYWLRISYC  242 (492)
Q Consensus       183 ~-----~~~l~~L~~L~l~~~~~lp~--------~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~c  242 (492)
                      .     +..=.+|..+.+..+..-|.        .+..+.+|+.|||..|.|+.     +-..+...+.|+.|.+.+|
T Consensus       175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence            1     11112444444444443333        34566788888888888762     2233444455666666665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.65  E-value=0.00024  Score=60.68  Aligned_cols=62  Identities=19%  Similarity=0.242  Sum_probs=32.8

Q ss_pred             cccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchh
Q 043408          166 ALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPES  227 (492)
Q Consensus       166 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~  227 (492)
                      .++.|++.+|.|.++|..+..++.|+.|++..+.  ..|..+..+.++-.|+..+|....+|..
T Consensus        78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen   78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             hhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            4455555555555555555555555555554443  2344444455666666666666666544

>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.58  E-value=0.0015  Score=36.24  Aligned_cols=20  Identities=55%  Similarity=1.077  Sum_probs=18.3

Q ss_pred             CceEEEccCCCccccccccc
Q 043408            1 NLVSLEMPHSSIKQLWKGVQ   20 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~   20 (492)
                      +|++|+|++|++++||+|.+
T Consensus         1 ~LVeL~m~~S~lekLW~G~k   20 (20)
T PF07725_consen    1 NLVELNMPYSKLEKLWEGVK   20 (20)
T ss_pred             CcEEEECCCCChHHhcCccC
Confidence            69999999999999999864

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.51  E-value=0.0011  Score=62.54  Aligned_cols=107  Identities=23%  Similarity=0.199  Sum_probs=72.8

Q ss_pred             cCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCc--ccCccccccccCCcCCcEEeccCCCC--CcccCCccCCCCC
Q 043408           20 QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TSLLETHSSIQYLNKLIVLNLEHCRS--LTSLSTSIHLESL   95 (492)
Q Consensus        20 ~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c--~~l~~~~~si~~L~~L~~L~L~~~~~--l~~lp~~~~l~~L   95 (492)
                      -.+.+|+.+++.++.. +.+..+-.+++|++|.++.|  .....++.....+++|++|++++|+.  +.+++....+++|
T Consensus        40 d~~~~le~ls~~n~gl-tt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   40 DEFVELELLSVINVGL-TTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccccchhhhhhhccce-eecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            3456666777666543 33445667889999999987  44445555556679999999999873  3455554588889


Q ss_pred             CEEEeeCCCCCccc---CccccCCCCCcEEEcccC
Q 043408           96 KTLILSGCSNLMKL---PSSIERLSSLILLNLRNC  127 (492)
Q Consensus        96 ~~L~L~~c~~l~~l---p~~i~~l~~L~~L~L~~~  127 (492)
                      ..|++.+|....--   -..+.-+++|++|+-...
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            99999998654411   123566788998886654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.48  E-value=0.0011  Score=62.75  Aligned_cols=106  Identities=26%  Similarity=0.186  Sum_probs=67.9

Q ss_pred             CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC--CCCcccCCcc-CCCCCCEEEeeCCCCCcccCcc---ccC
Q 043408           42 LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC--RSLTSLSTSI-HLESLKTLILSGCSNLMKLPSS---IER  115 (492)
Q Consensus        42 l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~--~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~---i~~  115 (492)
                      ...+.+|+.|.+.++.....  ..+-.|++|+.|.++.|  .....++... .+++|++|++++|..- . +++   +..
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~  114 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKE  114 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhh
Confidence            34456677777665432221  13446889999999998  3333343333 7799999999996543 2 333   566


Q ss_pred             CCCCcEEEcccCCCCCcc---ccccCCCCCCCEEeccCC
Q 043408          116 LSSLILLNLRNCSRLEGL---PSKICKLKSLERLNLSGC  151 (492)
Q Consensus       116 l~~L~~L~L~~~~~l~~l---p~~i~~l~~L~~L~Ls~c  151 (492)
                      +.+|..|++.+|......   -..+.-+++|++|+-...
T Consensus       115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            788899999998765511   122445788888876553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.47  E-value=0.0049  Score=56.21  Aligned_cols=99  Identities=21%  Similarity=0.285  Sum_probs=72.3

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCC-CCCccEEEeeCcccCcccc--ccccCCcCCcEEecc
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSL-ATNLESLTFRGCTSLLETH--SSIQYLNKLIVLNLE   78 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~-~~nL~~L~L~~c~~l~~~~--~si~~L~~L~~L~L~   78 (492)
                      ...+||+.|.+..+ ..+..+++|..|.|.+|++...-|++.. +++|+.|.|.+|. +.++-  .-+..+++|++|.+-
T Consensus        44 ~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeec
Confidence            45789999999887 4678899999999999998877788655 6889999999864 33322  235668899999988


Q ss_pred             CCCCCcccCCc----c-CCCCCCEEEeeCC
Q 043408           79 HCRSLTSLSTS----I-HLESLKTLILSGC  103 (492)
Q Consensus        79 ~~~~l~~lp~~----~-~l~~L~~L~L~~c  103 (492)
                      +|. ++.....    + .+++|++||..+-
T Consensus       122 ~Np-v~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  122 GNP-VEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CCc-hhcccCceeEEEEecCcceEeehhhh
Confidence            876 3222211    1 6777777777653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.50  E-value=0.0013  Score=62.59  Aligned_cols=96  Identities=21%  Similarity=0.259  Sum_probs=57.8

Q ss_pred             CCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCC
Q 043408          140 LKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKN  219 (492)
Q Consensus       140 l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n  219 (492)
                      +.+.++|++.||.. .++ ....+|+.|+.|.|+-|.|..+                      ..+..|++|++|+|..|
T Consensus        18 l~~vkKLNcwg~~L-~DI-sic~kMp~lEVLsLSvNkIssL----------------------~pl~rCtrLkElYLRkN   73 (388)
T KOG2123|consen   18 LENVKKLNCWGCGL-DDI-SICEKMPLLEVLSLSVNKISSL----------------------APLQRCTRLKELYLRKN   73 (388)
T ss_pred             HHHhhhhcccCCCc-cHH-HHHHhcccceeEEeeccccccc----------------------hhHHHHHHHHHHHHHhc
Confidence            34455566665422 222 1234555566666666655544                      34566778888888888


Q ss_pred             cccccc--hhhhcCccccccccccccccccCCC--------CCcccceee
Q 043408          220 NFERIP--ESIICLSHLYWLRISYCERLKSLPE--------LPCDLSDIE  259 (492)
Q Consensus       220 ~l~~lp--~~l~~l~~L~~L~L~~c~~l~~lp~--------l~~sL~~L~  259 (492)
                      .|.++-  ..++++++|+.|+|..|+.-+.-+.        ..++|++|+
T Consensus        74 ~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   74 CIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            877554  3677888888888888776554332        235666655

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.71  E-value=0.014  Score=33.46  Aligned_cols=21  Identities=38%  Similarity=0.449  Sum_probs=15.7

Q ss_pred             CCcEEecCCCcccccchhhhc
Q 043408          210 SLRILFLDKNNFERIPESIIC  230 (492)
Q Consensus       210 ~L~~L~L~~n~l~~lp~~l~~  230 (492)
                      +|++|+|++|+++.+|..+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            477888888888888776543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.12  E-value=0.024  Score=32.42  Aligned_cols=21  Identities=14%  Similarity=0.260  Sum_probs=15.0

Q ss_pred             CceEEEccCCCcccccccccC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQR   21 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~   21 (492)
                      +|++|+|++|+|+.+|.++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            577788888877777766554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.62  E-value=0.0046  Score=59.02  Aligned_cols=98  Identities=24%  Similarity=0.163  Sum_probs=43.8

Q ss_pred             CCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc---CCCCCCEE
Q 043408           22 LVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI---HLESLKTL   98 (492)
Q Consensus        22 l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~---~l~~L~~L   98 (492)
                      +.+.+.|+..+|.+ ..+.-..+++.|+.|.|+-|+.. .+ ..+..+++|+.|.|+.|. +.++....   ++++|++|
T Consensus        18 l~~vkKLNcwg~~L-~DIsic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGL-DDISICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCc-cHHHHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence            33444455555432 22222344555555555543221 11 123444555555555443 33332211   56666666


Q ss_pred             EeeCCCCCcccCc-----cccCCCCCcEEE
Q 043408           99 ILSGCSNLMKLPS-----SIERLSSLILLN  123 (492)
Q Consensus        99 ~L~~c~~l~~lp~-----~i~~l~~L~~L~  123 (492)
                      .|..|...+.-+.     .+.-|++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            6655444443322     244566666665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.62  E-value=0.28  Score=41.49  Aligned_cols=100  Identities=20%  Similarity=0.325  Sum_probs=44.3

Q ss_pred             cccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCCCCcccCCcc--CC
Q 043408           18 GVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCRSLTSLSTSI--HL   92 (492)
Q Consensus        18 ~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~~l~~lp~~~--~l   92 (492)
                      .+..+.+|+.+.+...  ...++.  |.++++|+.+.+.+.  +..+.. .+..+.+|+.+.+.+  .+..++...  .+
T Consensus         7 ~F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~   80 (129)
T PF13306_consen    7 AFYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNC   80 (129)
T ss_dssp             TTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-
T ss_pred             HHhCCCCCCEEEECCC--eeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccccccccc
Confidence            3455667777776642  233332  666667777777652  444433 344555677777754  244444333  46


Q ss_pred             CCCCEEEeeCCCCCcccCc-cccCCCCCcEEEccc
Q 043408           93 ESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRN  126 (492)
Q Consensus        93 ~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~  126 (492)
                      ++|+.+.+..  .+..++. .+.+. +|+.+.+..
T Consensus        81 ~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   81 TNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence            7777777754  2444433 35555 777776654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.17  E-value=0.053  Score=28.93  Aligned_cols=17  Identities=35%  Similarity=0.596  Sum_probs=8.3

Q ss_pred             CCCcEEecCCCcccccc
Q 043408          209 SSLRILFLDKNNFERIP  225 (492)
Q Consensus       209 ~~L~~L~L~~n~l~~lp  225 (492)
                      ++|+.|+|++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35666777777666554

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.25  E-value=0.75  Score=38.76  Aligned_cols=79  Identities=20%  Similarity=0.338  Sum_probs=33.8

Q ss_pred             CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCCCCcccCCcc--CCCCCCEEEeeCCCCCcccCc-cccCCC
Q 043408           42 LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPS-SIERLS  117 (492)
Q Consensus        42 l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~-~i~~l~  117 (492)
                      |.++++|+.+.+..  .+..+.. .+..+.+|+.+.+.+.  +..++...  ++++|+.+.+.+  .+..++. .+..++
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccc
Confidence            56666777777653  2333433 3445556777766552  45544433  455666666643  2222322 344455


Q ss_pred             CCcEEEccc
Q 043408          118 SLILLNLRN  126 (492)
Q Consensus       118 ~L~~L~L~~  126 (492)
                      +|+.+++..
T Consensus        82 ~l~~i~~~~   90 (129)
T PF13306_consen   82 NLKNIDIPS   90 (129)
T ss_dssp             TECEEEETT
T ss_pred             cccccccCc
Confidence            666665543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.93  E-value=0.37  Score=28.51  Aligned_cols=21  Identities=33%  Similarity=0.510  Sum_probs=17.4

Q ss_pred             CCCCcEEecCCCcccccchhh
Q 043408          208 LSSLRILFLDKNNFERIPESI  228 (492)
Q Consensus       208 l~~L~~L~L~~n~l~~lp~~l  228 (492)
                      +++|+.|+|++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467899999999999888754

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.93  E-value=0.37  Score=28.51  Aligned_cols=21  Identities=33%  Similarity=0.510  Sum_probs=17.4

Q ss_pred             CCCCcEEecCCCcccccchhh
Q 043408          208 LSSLRILFLDKNNFERIPESI  228 (492)
Q Consensus       208 l~~L~~L~L~~n~l~~lp~~l  228 (492)
                      +++|+.|+|++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467899999999999888754

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.07  E-value=0.08  Score=48.50  Aligned_cols=60  Identities=22%  Similarity=0.408  Sum_probs=25.4

Q ss_pred             ccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCc-c--CCCCCCEEEeeCCCCCc
Q 043408           48 LESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTS-I--HLESLKTLILSGCSNLM  107 (492)
Q Consensus        48 L~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~-~--~l~~L~~L~L~~c~~l~  107 (492)
                      ++.+|-+++..-.+-...+.+++.++.|.+.+|+.+....-. +  -.++|+.|++++|..++
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT  165 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence            344444443333333333444555555555555543321100 0  23455555555555443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.55  E-value=0.08  Score=48.48  Aligned_cols=79  Identities=19%  Similarity=0.283  Sum_probs=53.5

Q ss_pred             CCcEEEccCCCCCCC-CCCCCCCCCccEEEeeCcccCccccc-ccc-CCcCCcEEeccCCCCCcccCCcc--CCCCCCEE
Q 043408           24 NLKHLNLSHSEHLTK-IPDLSLATNLESLTFRGCTSLLETHS-SIQ-YLNKLIVLNLEHCRSLTSLSTSI--HLESLKTL   98 (492)
Q Consensus        24 ~L~~L~Ls~~~~l~~-~p~l~~~~nL~~L~L~~c~~l~~~~~-si~-~L~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L   98 (492)
                      .++.+|-+++.+..+ +..+..++.++.|.+.+|..+....- .++ -.++|+.|++++|..+++..-..  .+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            456788888776544 34577888888888888887654321 122 35789999999998777543221  67777777


Q ss_pred             EeeC
Q 043408           99 ILSG  102 (492)
Q Consensus        99 ~L~~  102 (492)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7765

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=85.43  E-value=0.0091  Score=62.91  Aligned_cols=177  Identities=24%  Similarity=0.255  Sum_probs=96.4

Q ss_pred             ceEEEccCCCcc-----cccccccCCCCCcEEEccCCCCCCCC-----CCCCCC-CCccEEEeeCcccCcc----ccccc
Q 043408            2 LVSLEMPHSSIK-----QLWKGVQRLVNLKHLNLSHSEHLTKI-----PDLSLA-TNLESLTFRGCTSLLE----THSSI   66 (492)
Q Consensus         2 L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~-----p~l~~~-~nL~~L~L~~c~~l~~----~~~si   66 (492)
                      +..|.|.+|.+.     .+-.++.....|..|++++|.+...-     ..+... ..|++|++..|....+    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            445666666665     23455667777888888887665221     112222 4566677766654332    33344


Q ss_pred             cCCcCCcEEeccCCCCCcc--------cCCcc-CCCCCCEEEeeCCCCCc----ccCccccCCCC-CcEEEcccCCCCCc
Q 043408           67 QYLNKLIVLNLEHCRSLTS--------LSTSI-HLESLKTLILSGCSNLM----KLPSSIERLSS-LILLNLRNCSRLEG  132 (492)
Q Consensus        67 ~~L~~L~~L~L~~~~~l~~--------lp~~~-~l~~L~~L~L~~c~~l~----~lp~~i~~l~~-L~~L~L~~~~~l~~  132 (492)
                      .....|+.++++.|.....        ++... ...++++|++.+|....    .+...+...+. +..|++..|..-..
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            4566777777777654211        11101 35567777777765432    12223444445 66677776655432


Q ss_pred             ----cccccCCC-CCCCEEeccCCCCCC----CcccccCCccccccccccccccc
Q 043408          133 ----LPSKICKL-KSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIR  178 (492)
Q Consensus       133 ----lp~~i~~l-~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~  178 (492)
                          +...+..+ ..++.++++.|+...    .+.+.+..++.++.+.++.|.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence                22333344 456777777766543    23444555666777777766553

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=85.16  E-value=0.016  Score=61.05  Aligned_cols=127  Identities=27%  Similarity=0.323  Sum_probs=66.0

Q ss_pred             CCcEEEcccCCCCC----ccccccCCCCCCCEEeccCCCCCC----CcccccC----Ccccccccccccccccc-----c
Q 043408          118 SLILLNLRNCSRLE----GLPSKICKLKSLERLNLSGCSNLQ----RLPNELG----NLEALKELKAEGIAIRE-----V  180 (492)
Q Consensus       118 ~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~----~l~~L~~L~l~~~~i~~-----l  180 (492)
                      .|++|++..|....    .+...+.....++.++++.|....    .++..+.    ...++++|.++++.+..     +
T Consensus       145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l  224 (478)
T KOG4308|consen  145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL  224 (478)
T ss_pred             HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence            44445555554433    233344445556666665554321    1122222    35566666666665541     1


Q ss_pred             ccccccCCC-CcccccCCCcC-------CccccCCC-CCCcEEecCCCccc-----ccchhhhcCccccccccccccc
Q 043408          181 PSSIVCLKN-LGRLSFESFKE-------LPECLGQL-SSLRILFLDKNNFE-----RIPESIICLSHLYWLRISYCER  244 (492)
Q Consensus       181 p~~~~~l~~-L~~L~l~~~~~-------lp~~l~~l-~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~~  244 (492)
                      -..+...+. +..|++..+..       +...+..+ ..++.++++.|.++     .+...+..+..++.|.++.|+.
T Consensus       225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence            112333333 44556555542       22334444 56677888888765     3555666777777777777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	492
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		4e-05
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		4e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 17/178 (9%)
Query: 2   LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLAT----------NLESL 51
           L +L +  + ++ L   +  L  L+ L++     LT++P+   +T          NL+SL
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 52  TFR--GCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIH-LESLKTLILSGCSNLMK 108
                G  SL  + +++Q L  L + N      L++L  +IH L  L+ L L GC+ L  
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRN----SPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 109 XXXXXXXXXXXXXXXXXXXXXXEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEA 166
                                   LP  I +L  LE+L+L GC NL RLP+ +  L A
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 39/168 (23%)
Query: 131 EGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEA---------LKELKAEGIAIREVP 181
             LP+ I  L  L  L++  C  L  LP  L + +A         L+ L+ E   IR +P
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199
Query: 182 SSIVCLKNLGRLSFE--------------------------SFKELPECLGQLSSLRILF 215
           +SI  L+NL  L                             + +  P   G  + L+ L 
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259
Query: 216 L-DKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHC 262
           L D +N   +P  I  L+ L  L +  C  L  LP L   ++ + A+C
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL---IAQLPANC 304

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	492
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-46
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  162 bits (413), Expect = 3e-46
 Identities = 65/241 (26%), Positives = 106/241 (43%), Gaps = 19/241 (7%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSL 59
             V+LE+    + Q      RL +L+H+ +  +  L ++PD +     LE+LT      L
Sbjct: 82  GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARN-PL 139

Query: 60  LETHSSIQYLNKLIVLNLEHCRSLTSLSTSI----------HLESLKTLILSGCSNLMKL 109
               +SI  LN+L  L++  C  LT L   +           L +L++L L   + +  L
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSL 198

Query: 110 PSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKE 169
           P+SI  L +L  L +RN   L  L   I  L  LE L+L GC+ L+  P   G    LK 
Sbjct: 199 PASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 170 LKAEGI-AIREVPSSIVCLKNLGRLSFE---SFKELPECLGQLSSLRILFLDKNNFERIP 225
           L  +    +  +P  I  L  L +L      +   LP  + QL +  I+ +  +   ++ 
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 226 E 226
           +
Sbjct: 318 Q 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  155 bits (395), Expect = 1e-43
 Identities = 47/250 (18%), Positives = 94/250 (37%), Gaps = 22/250 (8%)

Query: 10  SSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYL 69
           ++++     + +     + + +      +  +     N   +  R   +L  T   ++  
Sbjct: 23  TALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGRALKATADLLEDA 78

Query: 70  N--KLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRN 126
                + L L     L         L  L+ + +     LM+LP ++++ + L  L L  
Sbjct: 79  TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLAR 136

Query: 127 CSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVC 186
              L  LP+ I  L  L  L++  C  L  LP  L + +A  E              +V 
Sbjct: 137 NP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH-----------QGLVN 184

Query: 187 LKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLK 246
           L++L RL +   + LP  +  L +L+ L +  +    +  +I  L  L  L +  C  L+
Sbjct: 185 LQSL-RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243

Query: 247 SLPELPCDLS 256
           + P +    +
Sbjct: 244 NYPPIFGGRA 253

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  139 bits (353), Expect = 1e-37
 Identities = 52/242 (21%), Positives = 86/242 (35%), Gaps = 24/242 (9%)

Query: 45  ATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCS 104
           ++  E+L F+G T+L   H  +    +    +     S           +   +      
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ----ANSNNPQIETRTGR 66

Query: 105 NLMKLPSSIERLSSLIL--LNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELG 162
            L      +E  +      L LR+   L   P +  +L  L+ + +     L  LP+ + 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQ 124

Query: 163 NLEALKELKAEGIAIREVPSSIVCLKNLGRLSFE---SFKELPECLGQ---------LSS 210
               L+ L      +R +P+SI  L  L  LS        ELPE L           L +
Sbjct: 125 QFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 211 LRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIE---AHCCSSLE 267
           L+ L L+      +P SI  L +L  L+I     L +L      L  +E      C++L 
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALR 243

Query: 268 AL 269
             
Sbjct: 244 NY 245

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (293), Expect = 3e-29
 Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 10/185 (5%)

Query: 91  HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSG 150
           H    + L   G + L      + +       +            +     + + +    
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH----SAWRQANSNNPQ-IETRT 64

Query: 151 CSNLQRLPNELGNL--EALKELKAEGIAIREVPSSIVCLKNLGRL--SFESFKELPECLG 206
              L+   + L +        L+   + + + P     L +L  +        ELP+ + 
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ 124

Query: 207 QLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSD-IEAHCCSS 265
           Q + L  L L +N    +P SI  L+ L  L I  C  L  LPE         E     +
Sbjct: 125 QFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 266 LEALS 270
           L++L 
Sbjct: 185 LQSLR 189

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (279), Expect = 2e-27
 Identities = 49/156 (31%), Positives = 69/156 (44%), Gaps = 4/156 (2%)

Query: 14  QLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKL 72
                 Q LVNL+ L L  +  +  +P  ++   NL+SL  R    L     +I +L KL
Sbjct: 174 DASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKL 231

Query: 73  IVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLE 131
             L+L  C +L +          LK LIL  CSNL+ LP  I RL+ L  L+LR C  L 
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 132 GLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEAL 167
            LPS I +L +   + +      Q   +      A 
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  121 bits (306), Expect = 2e-29
 Identities = 48/264 (18%), Positives = 87/264 (32%), Gaps = 28/264 (10%)

Query: 21  RLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLET-HSSIQYLNKLIVLNLEH 79
            L +L    ++ +  +  I   S   +L+       T+ +     +IQ L KL ++   +
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSR-ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 80  CRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICK 139
                  +        +               S   L  L  + L NC  +  LP  +  
Sbjct: 458 SP----FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

Query: 140 LKSLERLNLSG---------CSNLQRLPNELGNLEALKELKAEGIAIREVPSS--IVCLK 188
           L  L+ LN++           ++  RL ++      ++        + E P+S  +  + 
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 189 NLGRLSFES--FKELPECLGQLSSLRILFLDKNNFERIPESI-ICLSHLYWLRISYCERL 245
            LG L       + L    G    L  L LD N  E IPE        +  L  S+  +L
Sbjct: 574 KLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KL 631

Query: 246 KSLPELPCDLSDIEAHCCSSLEAL 269
           K +P          A     + ++
Sbjct: 632 KYIPN------IFNAKSVYVMGSV 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  111 bits (279), Expect = 3e-26
 Identities = 42/270 (15%), Positives = 89/270 (32%), Gaps = 36/270 (13%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCT- 57
            L  L+  H+ ++ L +     V L  L L ++  + +IP+   +    +E L F     
Sbjct: 574 KLGLLDCVHNKVRHL-EAFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKL 631

Query: 58  SLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-------HLESLKTLILSGCSNLMKLP 110
             +    + + +  +  ++  + + + S   +I          +  T+ LS    + K P
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFP 689

Query: 111 SSI-ERLSSLILLNLRNCS-------RLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL- 161
           + +    S +  + L N          L+           L  ++L     L  L ++  
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR 748

Query: 162 -GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFES---------FKELPECLGQLSSL 211
              L  L  +          P+  +    L                 ++ P  +    SL
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 212 RILFLDKNNFERIPESIICLSHLYWLRISY 241
             L +  N+  ++ E +     LY L I+ 
Sbjct: 809 IQLQIGSNDIRKVDEKL--TPQLYILDIAD 836

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  111 bits (279), Expect = 4e-26
 Identities = 44/310 (14%), Positives = 96/310 (30%), Gaps = 41/310 (13%)

Query: 1   NLVSLEMPHSS-IKQLWKGVQRLVNLKHLNLSH---------SEHLTKIPD-LSLATNLE 49
           +L  +E+ +   + QL   +  L  L+ LN++              T++ D       ++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 50  SLTFRGC--TSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLM 107
                         + +S+Q + KL +L+  H + +  L        L  L L     + 
Sbjct: 552 IFYMGYNNLEEFPAS-ASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYN-QIE 608

Query: 108 KLPSSI-ERLSSLILLNLRNCSRLEGLPSK--ICKLKSLERLNLSGCSNLQRLPNELG-- 162
           ++P         +  L   +  +L+ +P+      +  +  ++ S    +      +   
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCS 666

Query: 163 ----NLEALKELKAEGIAIREVPSSIVC-LKNLGRLSF----------ESFKELPECLGQ 207
                      +      I++ P+ +      +  +             S K        
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 208 LSSLRILFLDKNNFERIPESIIC--LSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSS 265
              L  + L  N    + +      L +L  + +SY     S P  P + S ++A     
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRH 785

Query: 266 LEALSGLSIL 275
                G  IL
Sbjct: 786 QRDAEGNRIL 795

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (261), Expect = 7e-24
 Identities = 44/274 (16%), Positives = 84/274 (30%), Gaps = 46/274 (16%)

Query: 19  VQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLN-- 76
           + +L  LK L+       T    L     L           +  H    +L+    LN  
Sbjct: 343 IGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401

Query: 77  ------LEHCRSLTSLSTSIHLESLKTLILSGCSN-LMKLPSSIERLSSLILLNLRNCS- 128
                 +     +  +     + SLK   +   +N +  +  +I+RL+ L ++   N   
Sbjct: 402 DLLQDAINRNPEMKPIKKDSRI-SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460

Query: 129 ------------------RLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKEL 170
                             + E        LK L  + L  C N+ +LP+ L +L  L+ L
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 171 ----------KAEGIAIREVPSSIVCLKNLGRLSFE--SFKELPE--CLGQLSSLRILFL 216
                              +         +        + +E P    L ++  L +L  
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

Query: 217 DKNNFERIPESIICLSHLYWLRISYCERLKSLPE 250
             N    +         L  L++ Y  +++ +PE
Sbjct: 581 VHNKVRHLEA-FGTNVKLTDLKLDYN-QIEEIPE 612

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.6 bits (204), Expect = 9e-17
 Identities = 27/249 (10%), Positives = 70/249 (28%), Gaps = 37/249 (14%)

Query: 56  CTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSI- 113
                +    +    ++  L+L    +   +  +I  L  LK L      +         
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFG 367

Query: 114 -ERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCS-------------------- 152
            E L+  +    ++  R+      +   + L   +L   +                    
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427

Query: 153 --------NLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPEC 204
                    +  +   +  L  L+ +            ++   ++      + ++     
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV-DWEDANSDYAKQYENEELS 486

Query: 205 LGQLSSLRILFL-DKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDI--EAH 261
              L  L  + L +  N  ++P+ +  L  L  L I+   R  S  +L  D + +  +  
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN-RGISAAQLKADWTRLADDED 545

Query: 262 CCSSLEALS 270
               ++   
Sbjct: 546 TGPKIQIFY 554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 15/155 (9%)

Query: 6   EMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD---LSLATNLESLTFRGCTSLLET 62
            +P +S+K      +    L  ++L  +  LT + D    +    L ++           
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSF 768

Query: 63  HSSIQYLNKLIVLNLEHCRSLTS--LSTSI-----HLESLKTLILSGCSNLMKLPSSIER 115
            +     ++L    + H R      +            SL  L +    ++ K+   +  
Sbjct: 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL-- 825

Query: 116 LSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSG 150
              L +L++ +   +    + +C         L  
Sbjct: 826 TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  110 bits (277), Expect = 6e-27
 Identities = 51/252 (20%), Positives = 96/252 (38%), Gaps = 16/252 (6%)

Query: 2   LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE 61
             +L    + I Q++     L       L  +  +T +       ++  L   G    + 
Sbjct: 2   AATLATLPAPINQIFP-DADLAEGIRAVLQKA-SVTDVVTQEELESITKLVVAGE--KVA 57

Query: 62  THSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLIL 121
           +   I+YL  L  LNL   + +T +S   +L  L  L +   +N +   S+++ L++L  
Sbjct: 58  SIQGIEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIG--TNKITDISALQNLTNLRE 114

Query: 122 LNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVP 181
           L L     +  +   +  L  +  LNL    +     + L N+  L  L      +++V 
Sbjct: 115 LYLNED-NISDISP-LANLTKMYSLNLGAN-HNLSDLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 182 SSIVCLKNLGRLSFES--FKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRI 239
             I  L +L  LS      +++   L  L+SL       N    I   +  ++ L  L+I
Sbjct: 172 -PIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKI 228

Query: 240 SYCERLKSLPEL 251
               ++  L  L
Sbjct: 229 GNN-KITDLSPL 239

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  110 bits (277), Expect = 6e-27
 Identities = 46/253 (18%), Positives = 98/253 (38%), Gaps = 16/253 (6%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
             +   +  +S+  +    + L ++  L ++    +  I  +   TNLE L   G    +
Sbjct: 23  EGIRAVLQKASVTDV-VTQEELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGN--QI 78

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLI 120
              S +  L KL  L +   + +T +S   +L +L+ L L+   + +   S +  L+ + 
Sbjct: 79  TDISPLSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNE--DNISDISPLANLTKMY 135

Query: 121 LLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV 180
            LNL          S +  +  L  L ++    ++ +   + NL  L  L      I ++
Sbjct: 136 SLNLGAN-HNLSDLSPLSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLNYNQIEDI 192

Query: 181 PSSIVCLKNLGRLSFES--FKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR 238
            S +  L +L   +       ++   +  ++ L  L +  N    +   +  LS L WL 
Sbjct: 193 -SPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLS-PLANLSQLTWLE 249

Query: 239 ISYCERLKSLPEL 251
           I    ++  +  +
Sbjct: 250 IGTN-QISDINAV 261

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.1 bits (240), Expect = 4e-22
 Identities = 53/244 (21%), Positives = 96/244 (39%), Gaps = 15/244 (6%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
           NL  L +   +I  +   +  L  +  LNL  + +L+ +  LS  T L  LT       +
Sbjct: 111 NLRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK--V 167

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLI 120
           +  + I  L  L  L+L + + +  +S    L SL         N +   + +  ++ L 
Sbjct: 168 KDVTPIANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAY--VNQITDITPVANMTRLN 224

Query: 121 LLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV 180
            L + N  ++  L   +  L  L  L +     +  +   + +L  LK L      I ++
Sbjct: 225 SLKIGNN-KITDLSP-LANLSQLTWLEIGTN-QISDINA-VKDLTKLKMLNVGSNQISDI 280

Query: 181 PSSIVCLKNLGRLSFES---FKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWL 237
            S +  L  L  L   +     E  E +G L++L  LFL +N+   I   +  LS +   
Sbjct: 281 -SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSA 338

Query: 238 RISY 241
             + 
Sbjct: 339 DFAN 342

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  111 bits (279), Expect = 1e-26
 Identities = 74/304 (24%), Positives = 119/304 (39%), Gaps = 43/304 (14%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            + +L+     IK +  GV+ L NL  +N S++  LT I  L   T L  +        +
Sbjct: 47  QVTTLQADRLGIKSI-DGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNN--QI 102

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLI 120
              + +  L  L  L L + + +T +    +L +L  L LS  SN +   S++  L+SL 
Sbjct: 103 ADITPLANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELS--SNTISDISALSGLTSLQ 159

Query: 121 LLNLRN----------CSRLEGL---------PSKICKLKSLERLNLSGCSNLQRLPNEL 161
            L+  N           + LE L          S + KL +LE L  +    +  +   L
Sbjct: 160 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN-QISDITP-L 217

Query: 162 GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFES--FKELPECLGQLSSLRILFLDKN 219
           G L  L EL   G  ++++  ++  L NL  L   +     L   L  L+ L  L L  N
Sbjct: 218 GILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN 275

Query: 220 NFERIPESIICLSHLYWLRISYC--------ERLKSLPELPCDLSDIEAHCCSSLEALSG 271
               I   +  L+ L  L ++            LK+L  L   L        S + +L+ 
Sbjct: 276 QISNIS-PLAGLTALTNLELNENQLEDISPISNLKNLTYL--TLYFNNISDISPVSSLTK 332

Query: 272 LSIL 275
           L  L
Sbjct: 333 LQRL 336

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  102 bits (257), Expect = 9e-24
 Identities = 47/253 (18%), Positives = 102/253 (40%), Gaps = 18/253 (7%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
             +   +  +++         L  +  L       +  I  +    NL  + F      L
Sbjct: 25  EKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNN--QL 80

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLI 120
              + ++ L KL+ + + + + +  ++   +L +L  L L    N +     ++ L++L 
Sbjct: 81  TDITPLKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFN--NQITDIDPLKNLTNLN 137

Query: 121 LLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV 180
            L L +   +  + + +  L SL++L+     N       L NL  L+ L      + + 
Sbjct: 138 RLELSSN-TISDISA-LSGLTSLQQLSF---GNQVTDLKPLANLTTLERLDISSNKVSD- 191

Query: 181 PSSIVCLKNLGRLSFES--FKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR 238
            S +  L NL  L   +    ++   LG L++L  L L+ N  + I  ++  L++L  L 
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLD 249

Query: 239 ISYCERLKSLPEL 251
           ++   ++ +L  L
Sbjct: 250 LANN-QISNLAPL 261

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 93.9 bits (234), Expect = 9e-21
 Identities = 50/231 (21%), Positives = 94/231 (40%), Gaps = 16/231 (6%)

Query: 22  LVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81
           L  L+ L++S +  ++ I  L+  TNLESL        +   + +  L  L  L+L   +
Sbjct: 176 LTTLERLDISSN-KVSDISVLAKLTNLESLIATNN--QISDITPLGILTNLDELSLNGNQ 232

Query: 82  SLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLK 141
            L  + T   L +L  L L+    +  L   +  L+ L  L L    ++  +   +  L 
Sbjct: 233 -LKDIGTLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGAN-QISNISP-LAGLT 287

Query: 142 SLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFES--FK 199
           +L  L L+    L+ +   + NL+ L  L      I ++ S +  L  L RL F +    
Sbjct: 288 ALTNLELNEN-QLEDIS-PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVS 344

Query: 200 ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPE 250
           ++   L  L+++  L    N    +   +  L+ +  L ++      + P 
Sbjct: 345 DVSS-LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ-AWTNAPV 392

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.9 bits (216), Expect = 2e-18
 Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 12/227 (5%)

Query: 25  LKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLT 84
           L    ++    + +I   +                +    S   L+++  L  +    + 
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKT--NVTDTVSQTDLDQVTTLQADRLG-IK 59

Query: 85  SLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLE 144
           S+    +L +L  +  S   N +   + ++ L+ L+ + + N  ++  +   +  L +L 
Sbjct: 60  SIDGVEYLNNLTQINFSN--NQLTDITPLKNLTKLVDILMNNN-QIADITP-LANLTNLT 115

Query: 145 RLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPEC 204
            L L     +  +   L NL  L  L+     I ++ + +  L +L +LSF +     + 
Sbjct: 116 GLTLFNN-QITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP 172

Query: 205 LGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPEL 251
           L  L++L  L +  N    I   +  L++L  L  +   ++  +  L
Sbjct: 173 LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNN-QISDITPL 217

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.9 bits (203), Expect = 7e-17
 Identities = 41/223 (18%), Positives = 79/223 (35%), Gaps = 12/223 (5%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
           NL  L++ ++ I  L   +  L  L  L L  ++ ++ I  L+  T L +L        L
Sbjct: 244 NLTDLDLANNQISNL-APLSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNEN--QL 299

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLI 120
           E  S I  L  L  L L     ++ +S    L  L+ L     +N +   SS+  L+++ 
Sbjct: 300 EDISPISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFY--NNKVSDVSSLANLTNIN 356

Query: 121 LLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV 180
            L+  +  ++  L   +  L  + +L L+        P       ++             
Sbjct: 357 WLSAGHN-QISDLTP-LANLTRITQLGLNDQ-AWTNAPVNYKANVSIPNTVKNVTGALIA 413

Query: 181 PSSIVCLKNL--GRLSFESFKELPECLGQLSSLRILFLDKNNF 221
           P++I    +     +++       E     S    +      F
Sbjct: 414 PATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTF 456

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  111 bits (279), Expect = 3e-26
 Identities = 42/317 (13%), Positives = 99/317 (31%), Gaps = 55/317 (17%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
               +    ++I  + K V RL  L+   + +S         ++    E+          
Sbjct: 184 KDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS----PFVAENICEAWENENSEYAQQYK 239

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSG----------------- 102
                   L  L  + + +C +LT L T +  L  ++ + ++                  
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 103 ----CSNLMKL------------PSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERL 146
                  +  +             +S++++  L +L      +LEG          L  L
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASL 358

Query: 147 NLSGCSNLQRLPNEL-GNLEALKELKAEGIAIREVPSSIVC--LKNLGRLSF-------- 195
           NL+    +  +P    G  E ++ L      ++ +P+      +  +  + F        
Sbjct: 359 NLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 196 --ESFKELPECLGQLSSLRILFLDKNNFERIPESIIC-LSHLYWLRISYCERLKSLPELP 252
             ++F  L     +  ++  + L  N   + P+ +    S L  + +     L  +P+  
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNS 476

Query: 253 CDLSDIEAHCCSSLEAL 269
               +        L ++
Sbjct: 477 LKDENENFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  111 bits (279), Expect = 4e-26
 Identities = 42/272 (15%), Positives = 92/272 (33%), Gaps = 37/272 (13%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGC-- 56
            L  LE  ++ ++         + L  LNL+++  +T+IP         +E+L+F     
Sbjct: 331 KLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKL 389

Query: 57  TSLLETHSSIQYLNKLIVLNLEH-------CRSLTSLSTSI-HLESLKTLILSGCSNLMK 108
             +       + ++ +  ++  +        ++   L  +     ++ ++ LS    + K
Sbjct: 390 KYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISK 447

Query: 109 LP-SSIERLSSLILLNLRNCS-------RLEGLPSKICKLKSLERLNLSGCSNLQRLPNE 160
            P       S L  +NL            L+           L  ++L     L +L ++
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDD 506

Query: 161 L--GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFES---------FKELPECLGQLS 209
                L  L  +     +  + P+  +    L      +          +E PE +    
Sbjct: 507 FRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 210 SLRILFLDKNNFERIPESIICLSHLYWLRISY 241
           SL  L +  N+  ++ E I    ++  L I  
Sbjct: 567 SLTQLQIGSNDIRKVNEKI--TPNISVLDIKD 596

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  110 bits (276), Expect = 7e-26
 Identities = 35/284 (12%), Positives = 84/284 (29%), Gaps = 28/284 (9%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDL-SLATNLESLTFRGCTSL 59
             + +    + +       +   +L    ++       I     +      +      ++
Sbjct: 139 QKMRMHYQKTFVDYD--PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS-NNI 195

Query: 60  LETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSL 119
                ++  L KL    + +             E+ +                 + L  L
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNS----PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251

Query: 120 ILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ--------RLPNELGNLEALKELK 171
             + + NC  L  LP+ +  L  ++ +N++    +         +   +    E ++ + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 172 AEGIAIREV--PSSIVCLKNLGRLSFES--FKELPECLGQLSSLRILFLDKNNFERIPES 227
                ++     +S+  +K LG L       +      G    L  L L  N    IP +
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN 371

Query: 228 II-CLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALS 270
                  +  L  ++  +LK +P         +A   S + A+ 
Sbjct: 372 FCGFTEQVENLSFAHN-KLKYIPN------IFDAKSVSVMSAID 408

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (267), Expect = 1e-24
 Identities = 36/274 (13%), Positives = 90/274 (32%), Gaps = 40/274 (14%)

Query: 21  RLVNLKHLNLSH---------SEHLTKIPDLSLATNLESLTFRGCTSL--LETHSSIQYL 69
            L  ++ +N++           +    + D  +   ++ +      +L      +S+Q +
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKM 329

Query: 70  NKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSI-ERLSSLILLNLRNC 127
            KL +L   + + L     +      L +L L+    + ++P++       +  L+  + 
Sbjct: 330 KKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN 387

Query: 128 SRLEGLPSK--ICKLKSLERLNLSG-------CSNLQRLPNELGNLEALKELKAEGIAIR 178
            +L+ +P+      +  +  ++ S          N   L         +  +      I 
Sbjct: 388 -KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 179 EVPSSIVC-LKNLGRLSF----------ESFKELPECLGQLSSLRILFLDKNNFERIPES 227
           + P  +      L  ++            S K+  E       L  + L  N   ++ + 
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

Query: 228 IIC--LSHLYWLRISYCERLKSLPELPCDLSDIE 259
                L +L  + +SY       P  P + S ++
Sbjct: 507 FRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLK 539

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (255), Expect = 4e-23
 Identities = 47/300 (15%), Positives = 94/300 (31%), Gaps = 41/300 (13%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP---DLSLATNLESLTFRGCT 57
             +S E      + L         ++ + + ++ +L   P    L     L  L      
Sbjct: 284 RGISGEQLKDDWQAL-ADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN- 340

Query: 58  SLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIE- 114
            L     +     KL  LNL + + +T +  +     E ++ L  +    L  +P+  + 
Sbjct: 341 QLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDA 398

Query: 115 -RLSSLILLNLRN-------CSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE-LGNLE 165
             +S +  ++              + L     K  ++  +NLS    + + P E      
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGS 457

Query: 166 ALKELKAEG--------IAIREVPSSIVCLKNLGRLSFES--FKELPE--CLGQLSSLRI 213
            L  +   G         ++++   +      L  +        +L +      L  L  
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517

Query: 214 LFLDKNNFERIPESIICLSHLYWLRISYCERLKS---LPELPCDLSDIEAHCCSSLEALS 270
           + L  N+F + P   +  S L    I      +    L E P  ++      C SL  L 
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL-----CPSLTQLQ 572

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.7 bits (236), Expect = 9e-21
 Identities = 32/256 (12%), Positives = 66/256 (25%), Gaps = 28/256 (10%)

Query: 16  WKGVQ--RLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRG----CTSLLETHSSIQY 68
             GV       +  L+L       ++PD +   T LE L            L     I  
Sbjct: 72  QPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISA 131

Query: 69  LNKLIVLNLEHCRSLTSLSTSIHLE---SLKTLILSGCSNLMKLPSSIERLSSLILLNLR 125
                           +       E    L    ++       +  S         +   
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191

Query: 126 NCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIV 185
           + + +  +   + +L  L +  +     +     E    E  +  +              
Sbjct: 192 S-NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT----EDLKWD 246

Query: 186 CLKNLGRLSFES---FKELPECLGQLSSLRILFLDKNNFERIPE---------SIICLSH 233
            LK+L  +   +     +LP  L  L  ++++ +  N      +                
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 234 LYWLRISYCERLKSLP 249
           +  + I Y   LK+ P
Sbjct: 307 IQIIYIGYN-NLKTFP 321

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 29/186 (15%)

Query: 94  SLKTLILSGCSNLMKLPSSIERLSSLILLNLRN----CSRLEGLPSKICKLKSLERLNLS 149
            +  L L G     ++P +I +L+ L +L L +     +     P  I    S E+    
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 150 GCSNLQRLPNELGNLEALKELK---AEGIAIREVPSSIVCLKNLGRLSFES--FKELPEC 204
                +   +     +    +K         + +  S        ++   S     + + 
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 205 LGQLSSLRILFLDKNNF--------------------ERIPESIICLSHLYWLRISYCER 244
           + +L+ LR  ++  + F                    +        L  L  + +  C  
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 245 LKSLPE 250
           L  LP 
Sbjct: 262 LTKLPT 267

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.0 bits (164), Expect = 6e-12
 Identities = 34/205 (16%), Positives = 65/205 (31%), Gaps = 46/205 (22%)

Query: 7   MPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGC-------T 57
           +   +   L     + +N+  +NLS++  ++K P    S  + L S+   G         
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 58  SLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI---HLESLKTLILSG------------ 102
           SL + + + +    L  ++L   + LT LS       L  L  + LS             
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN 534

Query: 103 CSNLMKL-----------------PSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLER 145
            S L                    P  I    SL  L + +   +  +  KI    ++  
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKI--TPNISV 591

Query: 146 LNLSGCSNLQRLPNELGNLEALKEL 170
           L++    N+    + +         
Sbjct: 592 LDIKDNPNISIDLSYVCPYIEAGMY 616

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 14/163 (8%)

Query: 6   EMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLT--------FRGCT 57
           E+P +S+K   +  +    L  ++L  +  LTK+ D   AT L  L         F    
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFP 529

Query: 58  SLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERL 116
           +     S+++        + +  R+L      I    SL  L +    ++ K+   I   
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKI--T 586

Query: 117 SSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPN 159
            ++ +L++++   +    S +C         L      Q +  
Sbjct: 587 PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY-DKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 18/158 (11%), Positives = 48/158 (30%), Gaps = 10/158 (6%)

Query: 112 SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSG----CSNLQRLPNELGNLEAL 167
           S+     +  L+L        +P  I +L  LE L L       +     P  +    + 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 168 KELKAEGIAIREVPSSIVCLKNLGRLSFESF------KELPECLGQLSSLRILFLDKNNF 221
           ++ +   +  ++        ++   L  +        K + +          +    NN 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 222 ERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIE 259
             + ++++ L+ L    +     +        +  + E
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE 233

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (265), Expect = 2e-24
 Identities = 64/277 (23%), Positives = 93/277 (33%), Gaps = 42/277 (15%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TS 58
            L +LE+  + +  L      L+ L   +     HL  +P     + L  L   G   TS
Sbjct: 82  ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPL-THLPALP-----SGLCKLWIFGNQLTS 135

Query: 59  LLETHSSIQYLN--------------KLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCS 104
           L      +Q L+              +L  L   + + LTSL        L+ L +S   
Sbjct: 136 LPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQ-LTSLPMLP--SGLQELSVSDN- 191

Query: 105 NLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNL 164
            L  LP+    L  L   N R    L  LP+       L+ L +SG   L  LP     L
Sbjct: 192 QLASLPTLPSELYKLWAYNNR----LTSLPALPS---GLKELIVSGN-RLTSLPVLPSEL 243

Query: 165 EALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERI 224
              KEL   G  +  +P     L +L  +       LPE L  LSS   + L+ N     
Sbjct: 244 ---KELMVSGNRLTSLPMLPSGLLSL-SVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299

Query: 225 PESIIC-LSHLYWL---RISYCERLKSLPELPCDLSD 257
               +  ++         I +     S P     L  
Sbjct: 300 TLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL 336

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.1 bits (239), Expect = 3e-21
 Identities = 47/188 (25%), Positives = 68/188 (36%), Gaps = 22/188 (11%)

Query: 68  YLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNC 127
             N   VLN+     LT+L   +    + TL++    NL  LP+    L +L +      
Sbjct: 38  LNNGNAVLNVGESG-LTTLPDCL-PAHITTLVIPDN-NLTSLPALPPELRTLEVSGN--- 91

Query: 128 SRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCL 187
            +L  LP     L  L   +      L  LP        L +L   G  +  +P     L
Sbjct: 92  -QLTSLPVLPPGLLELSIFSNP----LTHLPALPSG---LCKLWIFGNQLTSLPVLPPGL 143

Query: 188 KNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKS 247
           + L  +S      LP    +L  L       N    +P      S L  L +S   +L S
Sbjct: 144 QEL-SVSDNQLASLPALPSELCKLW---AYNNQLTSLPMLP---SGLQELSVSDN-QLAS 195

Query: 248 LPELPCDL 255
           LP LP +L
Sbjct: 196 LPTLPSEL 203

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 29/134 (21%), Positives = 44/134 (32%), Gaps = 19/134 (14%)

Query: 136 KICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSF 195
           + C       LN+     L  LP+ L     +  L      +  +P+    L+ L  +S 
Sbjct: 35  RACLNNGNAVLNVGESG-LTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTL-EVSG 90

Query: 196 ESFKELPECLGQLSSLRILFLDKNNFERIPESIICL--------------SHLYWLRISY 241
                LP     L  L I      +   +P  +  L                L  L +S 
Sbjct: 91  NQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD 150

Query: 242 CERLKSLPELPCDL 255
             +L SLP LP +L
Sbjct: 151 N-QLASLPALPSEL 163

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (262), Expect = 2e-24
 Identities = 61/289 (21%), Positives = 98/289 (33%), Gaps = 55/289 (19%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSE----------------HLTKIPDLSL 44
           +L SL    +S+ +L +  Q L +L   N +                    L K+P+L  
Sbjct: 92  HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQN 151

Query: 45  ATNLESLTFRGC--TSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSG 102
           ++ L+ +         L +          L  +   + + L  L    +L  L  +    
Sbjct: 152 SSFLKIIDVDNNSLKKLPDL------PPSLEFIAAGNNQ-LEELPELQNLPFLTAIYADN 204

Query: 103 CSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELG 162
             +L KLP     L S++  N    + LE LP  +  L  L  +       L+ LP+   
Sbjct: 205 N-SLKKLPDLPLSLESIVAGN----NILEELPE-LQNLPFLTTIYADNN-LLKTLPDLPP 257

Query: 163 NLEALKELKAEGIAIREVPSSIVCLKNL--GRLSFESFKELPECLGQL------------ 208
           +L   + L      + ++P     L  L      F    ELP  L  L            
Sbjct: 258 SL---EALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD 314

Query: 209 --SSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDL 255
              SL  L +  N    +P        L  L  S+   L  +PELP +L
Sbjct: 315 LPPSLEELNVSNNKLIELPALP---PRLERLIASFN-HLAEVPELPQNL 359

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (261), Expect = 3e-24
 Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 29/244 (11%)

Query: 9   HSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQY 68
            S++ ++    + + +      + SE     P  +       +        L+       
Sbjct: 20  SSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNG--EQREMAVSRLRDCLDRQ----- 72

Query: 69  LNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCS 128
                 L L +   L+SL        L++L+ S C++L +LP   + L SL++ N  N  
Sbjct: 73  ---AHELELNNL-GLSSLPELP--PHLESLVAS-CNSLTELPELPQSLKSLLVDNN-NLK 124

Query: 129 RLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLK 188
            L  LP        LE L +S    L++LP EL N   LK +  +  +++++P     L+
Sbjct: 125 ALSDLPP------LLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLE 176

Query: 189 NLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSL 248
            +        +ELPE L  L  L  ++ D N+ +++P+  + L  +          L+ L
Sbjct: 177 FI-AAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIV---AGNN-ILEEL 230

Query: 249 PELP 252
           PEL 
Sbjct: 231 PELQ 234

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (251), Expect = 6e-23
 Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 29/264 (10%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLV-----NLKHLNLSHSEHLTKIPDLSLATNLESLTFRG 55
           +      P  + +Q    V RL          L L++   L+ +P+L    +LESL    
Sbjct: 44  SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL--PPHLESLVA-S 99

Query: 56  CTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIER 115
           C SL E     Q L  L+V N     +L +LS       L+ L +S    L KLP  ++ 
Sbjct: 100 CNSLTELPELPQSLKSLLVDNN----NLKALSDLP--PLLEYLGVSNN-QLEKLPE-LQN 151

Query: 116 LSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGI 175
            S L ++++ N   L+ LP       SLE +       L+ LP EL NL  L  + A+  
Sbjct: 152 SSFLKIIDVDNN-SLKKLPDL---PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN 205

Query: 176 AIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLY 235
           +++++P   + L+++        +ELPE L  L  L  ++ D N  + +P+    L  L 
Sbjct: 206 SLKKLPDLPLSLESI-VAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALN 263

Query: 236 WLRISYCERLKSLPELPCDLSDIE 259
                    L  LPELP  L+ ++
Sbjct: 264 VRDN----YLTDLPELPQSLTFLD 283

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.8 bits (244), Expect = 4e-22
 Identities = 61/255 (23%), Positives = 104/255 (40%), Gaps = 30/255 (11%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
           +L  +   ++ +++L   +Q L  L  +   ++  L K+PDL    +LES+       +L
Sbjct: 174 SLEFIAAGNNQLEEL-PELQNLPFLTAIYADNN-SLKKLPDLP--LSLESIVAGNN--IL 227

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLI 120
           E    +Q L  L  +  ++   L +L       SL+ L +     L  LP   + L+ L 
Sbjct: 228 EELPELQNLPFLTTIYADNNL-LKTLPDLPP--SLEALNVRDNY-LTDLPELPQSLTFLD 283

Query: 121 LLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV 180
           +      S L  LP       +L  LN S    ++ L +   +LE   EL      + E+
Sbjct: 284 VSENIF-SGLSELP------PNLYYLNASSN-EIRSLCDLPPSLE---ELNVSNNKLIEL 332

Query: 181 PSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRIS 240
           P+    L+ L   SF    E+PE      +L+ L ++ N     P+    +  L      
Sbjct: 333 PALPPRLERL-IASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLR----- 383

Query: 241 YCERLKSLPELPCDL 255
               L  +PELP +L
Sbjct: 384 MNSHLAEVPELPQNL 398

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.7 bits (205), Expect = 4e-17
 Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 28/182 (15%)

Query: 89  SIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKI----------- 137
           ++    L+  +    SNL ++P   E + S               P              
Sbjct: 7   NVSNTFLQEPLRH-SSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 138 --CKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRL-- 193
             C  +    L L+    L  LP    +LE    L A   ++ E+P     LK+L     
Sbjct: 66  RDCLDRQAHELELNNL-GLSSLPELPPHLE---SLVASCNSLTELPELPQSLKSLLVDNN 121

Query: 194 SFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPC 253
           + ++  +LP        L  L +  N  E++PE +   S L  + +     LK LP+LP 
Sbjct: 122 NLKALSDLP------PLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNN-SLKKLPDLPP 173

Query: 254 DL 255
            L
Sbjct: 174 SL 175

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 48/203 (23%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TS 58
           +L +L +  + +  L +  Q L  L           + +    L  NL  L        S
Sbjct: 258 SLEALNVRDNYLTDLPELPQSLTFLDVSENI----FSGLS--ELPPNLYYLNASSNEIRS 311

Query: 59  LLETHSSIQYLN--------------KLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCS 104
           L +   S++ LN              +L  L       L  +      ++LK L +    
Sbjct: 312 LCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNH-LAEVPELP--QNLKQLHVEYN- 367

Query: 105 NLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLK-----------------SLERLN 147
            L + P   E +  L + +      L  +P     LK                 S+E L 
Sbjct: 368 PLREFPDIPESVEDLRMNS-----HLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLR 422

Query: 148 LSGCSNLQRLPNELGNLEALKEL 170
           ++    +          + L++ 
Sbjct: 423 MNSERVVDPYEFAHETTDKLEDD 445

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.7 bits (249), Expect = 2e-23
 Identities = 48/287 (16%), Positives = 102/287 (35%), Gaps = 22/287 (7%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGCT 57
                ++  SS+KQ    + Q   N+K L+LS +  L++I    LA  T LE L      
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN- 68

Query: 58  SLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLS 117
            +L     ++ L+ L  L+L +   +  L       S++TL  +   N+ ++  S     
Sbjct: 69  -VLYETLDLESLSTLRTLDLNNNY-VQELLV---GPSIETLHAANN-NISRVSCSR--GQ 120

Query: 118 SLILLNLRNCSRLEGLPSK-ICKLKSLERLNLSGCSNLQRLPNE--LGNLEALKELKAEG 174
               + L N  ++  L          ++ L+L     +  +       + + L+ L  + 
Sbjct: 121 GKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQY 178

Query: 175 IAIREVPSSIVCLKNLGRLSFES--FKELPECLGQLSSLRILFLDKNNFERIPESIICLS 232
             I +V   +     L  L   S     +       + +  + L  N    I +++    
Sbjct: 179 NFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237

Query: 233 HLYWLRISYCE-RLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQ 278
           +L    +        +L +       ++     +++ L+G +     
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 33/184 (17%), Positives = 58/184 (31%), Gaps = 27/184 (14%)

Query: 91  HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSK-ICKLKSLERLNLS 149
           +    K   ++  S    L S  +   ++  L+L     L  + +  +     LE LNLS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLS 66

Query: 150 -----------GCSNLQRL------PNELGNLEALKELKAEGIAIREVPSSIVCLKNLGR 192
                        S L+ L        EL    +++ L A    I  V  S    +    
Sbjct: 67  SNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR--GQGKKN 124

Query: 193 LSFES--FKELPEC-LGQLSSLRILFLDKNNFERIP--ESIICLSHLYWLRISYCERLKS 247
           +   +     L +   G  S ++ L L  N  + +   E       L  L + Y   +  
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYD 183

Query: 248 LPEL 251
           +   
Sbjct: 184 VKGQ 187

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 10/145 (6%)

Query: 109 LPSSIERLSSLILLNLRNCSRLEGLPSKICK-LKSLERLNLSGCSNLQRLP-NELGNLEA 166
           +    +  +   +  + +   L+   + + +   +++ L+LSG   L ++   +L     
Sbjct: 2   IHEIKQNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59

Query: 167 LKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPE 226
           L+ L      + E    +  L  L  L   +   + E L    S+  L    NN  R+  
Sbjct: 60  LELLNLSSNVLYETL-DLESLSTLRTLDL-NNNYVQE-LLVGPSIETLHAANNNISRVSC 116

Query: 227 SIICLSHLYWLRISYCERLKSLPEL 251
           S         + ++   ++  L +L
Sbjct: 117 SR--GQGKKNIYLANN-KITMLRDL 138

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.4 bits (245), Expect = 3e-22
 Identities = 48/287 (16%), Positives = 103/287 (35%), Gaps = 22/287 (7%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGCT 57
                ++  SS+KQ    + Q   N+K L+LS +  L++I    LA  T LE L      
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN- 68

Query: 58  SLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLS 117
            +L     ++ L+ L  L+L +   +  L       S++TL  +   N+ ++  S     
Sbjct: 69  -VLYETLDLESLSTLRTLDLNNNY-VQELLV---GPSIETLHAANN-NISRVSCSR--GQ 120

Query: 118 SLILLNLRNCSRLEGLPSK-ICKLKSLERLNLSGCSNLQRLPNE--LGNLEALKELKAEG 174
               + L N  ++  L          ++ L+L   + +  +       + + L+ L  + 
Sbjct: 121 GKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQY 178

Query: 175 IAIREVPSSIVCLKNLGRLSFES--FKELPECLGQLSSLRILFLDKNNFERIPESIICLS 232
             I +V   +     L  L   S     +       + +  + L  N    I +++    
Sbjct: 179 NFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237

Query: 233 HLYWLRISYCE-RLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQ 278
           +L    +        +L +       ++     +++ L+G +     
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.2 bits (216), Expect = 1e-18
 Identities = 36/275 (13%), Positives = 87/275 (31%), Gaps = 41/275 (14%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGCT- 57
           ++ +L   +++I ++          K++ L+++  +T + DL     + ++ L  +    
Sbjct: 100 SIETLHAANNNISRVSCSR--GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEI 156

Query: 58  SLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLS 117
             +         + L  LNL++   +  +   +    LKTL LS    L  +    +  +
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAA 214

Query: 118 SLILLNLRNCSRLEGLPSKICKLKSLERLNLSG----------------------CSNLQ 155
            +  ++LRN  +L  +   +   ++LE  +L G                         ++
Sbjct: 215 GVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 156 RLP-NELGNLEALKELKAEGIAIREVPSSIVC-LKNLGR-------LSFESFKELPECLG 206
           +L                      ++P+     L  L R             + L     
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 207 QLSSLRILFLDKNNFERIPESII-CLSHLYWLRIS 240
             +  R +   K  +  + + +         L   
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQK 368

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 7e-10
 Identities = 33/184 (17%), Positives = 58/184 (31%), Gaps = 27/184 (14%)

Query: 91  HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSK-ICKLKSLERLNLS 149
           +    K   ++  S    L S  +   ++  L+L     L  + +  +     LE LNLS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLS 66

Query: 150 -----------GCSNLQRL------PNELGNLEALKELKAEGIAIREVPSSIVCLKNLGR 192
                        S L+ L        EL    +++ L A    I  V  S    +    
Sbjct: 67  SNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR--GQGKKN 124

Query: 193 LSFES--FKELPE-CLGQLSSLRILFLDKNNFERIP--ESIICLSHLYWLRISYCERLKS 247
           +   +     L +   G  S ++ L L  N  + +   E       L  L + Y   +  
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYD 183

Query: 248 LPEL 251
           +   
Sbjct: 184 VKGQ 187

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 24/147 (16%), Positives = 54/147 (36%), Gaps = 14/147 (9%)

Query: 109 LPSSIERLSSLILLNLRNCSRLEGLPSKICK-LKSLERLNLSGCSNLQRL-PNELGNLEA 166
           +    +  +   +  + + S L+   + + +   +++ L+LSG   L ++   +L     
Sbjct: 2   IHEIKQNGNRYKIEKVTD-SSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59

Query: 167 LKELKAEGIAIREVPSSIVCLKNLGRLSFES--FKELPECLGQLSSLRILFLDKNNFERI 224
           L+ L      + E    +  L  L  L   +   +EL        S+  L    NN  R+
Sbjct: 60  LELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRV 114

Query: 225 PESIICLSHLYWLRISYCERLKSLPEL 251
             S         + ++   ++  L +L
Sbjct: 115 SCSR--GQGKKNIYLANN-KITMLRDL 138

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.8 bits (238), Expect = 3e-21
 Identities = 48/294 (16%), Positives = 84/294 (28%), Gaps = 37/294 (12%)

Query: 1   NLVSLEMPHSSIKQLWKGVQ--RLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC-- 56
                 +P  +  +    ++   +     L L+   +L+ +PD +L   +  L       
Sbjct: 35  KWEKQALPGENRNEAVSLLKECLINQFSELQLNRL-NLSSLPD-NLPPQITVLEITQNAL 92

Query: 57  TSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERL 116
            SL E          L  L+    R L++L       SLK L +     L  LP     L
Sbjct: 93  ISLPEL------PASLEYLDACDNR-LSTLPELP--ASLKHLDVDNN-QLTMLPELPALL 142

Query: 117 SSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIA 176
             +   N  N  +L  LP       SLE L++     L  LP    +LE    L      
Sbjct: 143 EYINADN--N--QLTMLPELPT---SLEVLSVRNN-QLTFLPELPESLE---ALDVSTNL 191

Query: 177 IREVPSSIVCLKNLGRLSFE------SFKELPECLGQLSSLRILFLDKNNFERIPESIIC 230
           +  +P+  V   +                 +PE +  L     + L+ N         + 
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251

Query: 231 LSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEA-LSGLSILFTQTSWNS 283
                                    + +      ++ A             W++
Sbjct: 252 QQTAQPDYHG---PRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.0 bits (229), Expect = 6e-20
 Identities = 50/267 (18%), Positives = 99/267 (37%), Gaps = 23/267 (8%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGC- 56
           NL  L++    I  + +   Q    L  L L+ +  L  + + +L+    L+ L F    
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTG 116

Query: 57  -TSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKL-PSS 112
            +S+      +     L  L L     ++S+        E LK L       +  L    
Sbjct: 117 ISSIDF--IPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKED 172

Query: 113 IERLSSLILLNLR-NCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGN--LEALKE 169
           +  L     L+L  N + + G+          + LN  G  NL  +   L N  +++L  
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 170 LKAEGIAIREVPSSI---VCLKNLGRLSFES---FKELPECLGQLSSLRILFLDKNNFER 223
              E +   ++  ++   +C  ++  ++ +    F          S L+ L L   +   
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE 292

Query: 224 IPESIICLSHLYWLRISYCERLKSLPE 250
           +P  ++ LS L  L +S   + ++L +
Sbjct: 293 LPSGLVGLSTLKKLVLSAN-KFENLCQ 318

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.4 bits (217), Expect = 2e-18
 Identities = 58/261 (22%), Positives = 97/261 (37%), Gaps = 33/261 (12%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGCTS 58
            L  L++  + + +L  G+  L  LK L LS +     +  +S +   +L  L+ +G T 
Sbjct: 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTK 337

Query: 59  LLETHS-SIQYLNKLIVLNLEHCRSLTSLSTSIH----LESLKTLILSGCSNLMKLPSSI 113
            LE  +  ++ L  L  L+L H   + +          L  L++L LS    L     + 
Sbjct: 338 RLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 114 ERLSSLILLNLRNCSRLEGLPSK--ICKLKSLERLNLSGCSNLQRLPNE-LGNLEALKEL 170
           +    L LL+L    RL+   ++     L  L+ LNLS    L     +    L AL+ L
Sbjct: 397 KECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHL 454

Query: 171 KAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESII- 229
             +G    +                    +    L  L  L IL L   +   I +    
Sbjct: 455 NLQGNHFPKGN-----------------IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 230 CLSHLYWLRISYCERLKSLPE 250
            L  +  + +S+  RL S   
Sbjct: 498 SLKMMNHVDLSHN-RLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.1 bits (206), Expect = 4e-17
 Identities = 59/314 (18%), Positives = 102/314 (32%), Gaps = 55/314 (17%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGC- 56
            L  L +  +  + L +       +L HL++  +    ++    L    NL  L      
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 57  -TSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCS-NLMKLPSS 112
             +    +  ++ L+ L  LNL +     SL T        L+ L L+     +    S 
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 113 IERLSSLILLNLRNCSRLEGLPSKICK-LKSLERLNLSGCS---NLQRLPNELGNLEALK 168
            + L  L +LNL +   L+    ++   L +L+ LNL G        +  N L  L  L+
Sbjct: 421 FQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 169 ELKAEGIAIREVPS-SIVCLKNLGRL----------SFESFKEL---------------- 201
            L      +  +   +   LK +  +          S E+   L                
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIIL 539

Query: 202 PECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAH 261
           P  L  LS  R + L +N  +       C     +      E  K   +   D  D    
Sbjct: 540 PSLLPILSQQRTINLRQNPLD-------CTCSNIYFL----EWYKENMQKLEDTEDTL-- 586

Query: 262 CCSSLEALSGLSIL 275
            C +   L G+ + 
Sbjct: 587 -CENPPLLRGVRLS 599

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.2 bits (223), Expect = 2e-19
 Identities = 45/240 (18%), Positives = 89/240 (37%), Gaps = 17/240 (7%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
             +   +   S+         L ++  +  ++S+ +  +  +    N+  L   G    L
Sbjct: 22  ETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGN--KL 77

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLI 120
                +  L  L  L L+  + +  LS+   L+ LK+L L     +  + + +  L  L 
Sbjct: 78  TDIKPLTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHN-GISDI-NGLVHLPQLE 134

Query: 121 LLNLRNC--SRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR 178
            L L N   + +  L     +L  L+ L+L     +  +   L  L  L+ L      I 
Sbjct: 135 SLYLGNNKITDITVL----SRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNHIS 188

Query: 179 EVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR 238
           ++  ++  LKNL  L   S + L + +   S+L +    KN    +  +   +S      
Sbjct: 189 DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEIISDDGDYE 246

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.8 bits (191), Expect = 2e-15
 Identities = 51/276 (18%), Positives = 84/276 (30%), Gaps = 72/276 (26%)

Query: 12  IKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TSLLETHSSIQYL 69
           IKQ+             NL     +T     +   +++ +        S+      IQYL
Sbjct: 11  IKQI-FPDDAFAETIKDNLKKKS-VTDAVTQNELNSIDQIIANNSDIKSV----QGIQYL 64

Query: 70  NKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNC-- 127
             +  L L   + LT +    +L++L  L L     +  L SS++ L  L  L+L +   
Sbjct: 65  PNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDEN-KIKDL-SSLKDLKKLKSLSLEHNGI 121

Query: 128 SRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCL 187
           S + GL      L  LE L L          N++ ++  L  L                 
Sbjct: 122 SDINGLV----HLPQLESLYLGN--------NKITDITVLSRLT---------------- 153

Query: 188 KNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYC----- 242
                                  L  L L+ N    I   +  L+ L  L +S       
Sbjct: 154 ----------------------KLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDL 190

Query: 243 ---ERLKSLPELPCDLSDIEAHCCSSLEALSGLSIL 275
                LK+L  L     +      +    L   + +
Sbjct: 191 RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 89.3 bits (222), Expect = 4e-19
 Identities = 59/301 (19%), Positives = 111/301 (36%), Gaps = 26/301 (8%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRG--CTS 58
               LE+ +    Q      +L +LK L  + ++      ++ L  +LE L       + 
Sbjct: 305 GWQHLELVNCKFGQF--PTLKLKSLKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSF 361

Query: 59  LLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSI-ERLS 117
                 S      L  L+L     +T  S  + LE L+ L     +       S+   L 
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 118 SLILLNLRNCSRLEGLPSK-ICKLKSLERLNLSGCSNLQR--LPNELGNLEALKELKAEG 174
           +LI L++ +        +     L SLE L ++G  + Q   LP+    L  L  L    
Sbjct: 422 NLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQ 479

Query: 175 IAIREV-PSSIVCLKNLGRLSFES---FKELPECLGQLSSLRILFLDKNNFERIPESII- 229
             + ++ P++   L +L  L+      F         L+SL++L    N+     +  + 
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 230 -CLSHLYWLRISY------CER---LKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQT 279
              S L +L ++       CE    L+ + +    L ++E   C++     G+ +L    
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNI 599

Query: 280 S 280
           +
Sbjct: 600 T 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.5 bits (207), Expect = 3e-17
 Identities = 55/251 (21%), Positives = 94/251 (37%), Gaps = 20/251 (7%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            L  L+     I  L+     L N+   +L     + ++ D S     + L    C    
Sbjct: 263 RLAYLDYYLDDIIDLFNC---LTNVSSFSLVSV-TIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMK--LPSSIERLSS 118
                ++ L +L   +        +  + + L SL+ L LS      K     S    +S
Sbjct: 319 FPTLKLKSLKRLTFTSN----KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 119 LILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRL--PNELGNLEALKELKAEGIA 176
           L  L+L     +  + S    L+ LE L+     NL+++   +   +L  L  L      
Sbjct: 375 LKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 177 IREVPSSIVC-LKNLGRLSFES--FKE--LPECLGQLSSLRILFLDKNNFERI-PESIIC 230
            R   + I   L +L  L      F+E  LP+   +L +L  L L +   E++ P +   
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 231 LSHLYWLRISY 241
           LS L  L +S+
Sbjct: 493 LSSLQVLNMSH 503

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 52/308 (16%), Positives = 102/308 (33%), Gaps = 41/308 (13%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGC- 56
            L  L++    I+ +  G  Q L +L  L L+ +  +  +   + +  ++L+ L      
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN 111

Query: 57  -TSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI---HLESLKTLILSGCSNLMKL-PS 111
             SL      I +L  L  LN+ H   + S        +L +L+ L LS    +  +  +
Sbjct: 112 LASLEN--FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCT 167

Query: 112 SIERLSSL----ILLNLRNCSRLEGLPSKICKLKSLERLNLSGCS-NLQRLPNELGNLEA 166
            +  L  +    + L+L     +  +     K   L +L L     +L  +   +  L  
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 226

Query: 167 LKELKAEGIAIREVPS----SIVCLKNLGRLSFE---------SFKELPECLGQLSSLRI 213
           L+  +      R   +        L+ L  L+ E            ++ +    L+++  
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 214 LFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPC------DLSDIEAHCCSSLE 267
             L     ER+ +          L +  C +    P L          +  +     S  
Sbjct: 287 FSLVSVTIERVKDFSY-NFGWQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 268 ALSGLSIL 275
            L  L  L
Sbjct: 345 DLPSLEFL 352

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.7 bits (171), Expect = 7e-13
 Identities = 39/168 (23%), Positives = 62/168 (36%), Gaps = 11/168 (6%)

Query: 81  RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSK-ICK 139
            +   +  ++   S K L LS          S      L +L+L  C  ++ +       
Sbjct: 17  LNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQS 74

Query: 140 LKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLS---- 194
           L  L  L L+G             L +L++L A    +  +    I  LK L  L+    
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 195 -FESFKELPECLGQLSSLRILFLDKNNFERI-PESIICLSHLYWLRIS 240
             +SFK LPE    L++L  L L  N  + I    +  L  +  L +S
Sbjct: 135 LIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 53/301 (17%), Positives = 95/301 (31%), Gaps = 53/301 (17%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLAT-------NLESLTF 53
             +SL++  + +  +  G  + + L  L L ++     +    +          L    F
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

Query: 54  RGCTSLLE-THSSIQYLNKLIVLNLEHCRSLTSLSTSI----HLESLKTLILSGCSNLMK 108
           R   +L +   S+++ L  L +           L   I     L ++ +  L   S  ++
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV--SVTIE 295

Query: 109 LPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALK 168
                        L L NC      P+   KLKSL+RL  +  SN         +L +L+
Sbjct: 296 RVKDFSYNFGWQHLELVNCK-FGQFPT--LKLKSLKRLTFT--SNKGGNAFSEVDLPSLE 350

Query: 169 ELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESI 228
            L                  +L R          +     +SL+ L L  N    +  + 
Sbjct: 351 FL------------------DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392

Query: 229 ICLSHLYWLRISYCERLKSLPELPC----------DLSD-----IEAHCCSSLEALSGLS 273
           + L  L  L   +   LK + E             D+S            + L +L  L 
Sbjct: 393 LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 274 I 274
           +
Sbjct: 452 M 452

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 89.2 bits (221), Expect = 5e-19
 Identities = 61/266 (22%), Positives = 101/266 (37%), Gaps = 26/266 (9%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGC- 56
           N   +   +S++++L   +      ++ LNL+    + +I   + A    ++ L      
Sbjct: 52  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA 110

Query: 57  -TSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSI 113
              L       Q +  L VL LE    L+SL   I  +   L TL +S   NL ++    
Sbjct: 111 IRYLPP--HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDT 166

Query: 114 -ERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKA 172
            +  +SL  L L +  RL  +   +  + SL   N+S    L  L        A++EL A
Sbjct: 167 FQATTSLQNLQLSSN-RLTHVDLSL--IPSLFHANVSYN-LLSTLA----IPIAVEELDA 218

Query: 173 EGIAIREVPSSI-VCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESII-C 230
              +I  V   + V L  L +L   +  +    L     L  + L  N  E+I       
Sbjct: 219 SHNSINVVRGPVNVELTIL-KLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVK 276

Query: 231 LSHLYWLRISYCERLKSLPELPCDLS 256
           +  L  L IS   RL +L      + 
Sbjct: 277 MQRLERLYISNN-RLVALNLYGQPIP 301

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 22/148 (14%), Positives = 58/148 (39%), Gaps = 8/148 (5%)

Query: 109 LPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE-LGNLEAL 167
           + S+++       +++   ++      +   L + + +       +++LP   L +   +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQV 77

Query: 168 KELKAEGIAIREVPSSI-VCLKNLGRL--SFESFKELPE-CLGQLSSLRILFLDKNNFER 223
           + L    + I E+ +        + +L   F + + LP      +  L +L L++N+   
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 224 IPESIIC-LSHLYWLRISYCERLKSLPE 250
           +P  I      L  L +S    L+ + +
Sbjct: 138 LPRGIFHNTPKLTTLSMSNN-NLERIED 164

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.8 bits (218), Expect = 5e-19
 Identities = 49/277 (17%), Positives = 99/277 (35%), Gaps = 37/277 (13%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGC- 56
           N   +   +S++++L   +      ++ LNL+    + +I   + A    ++ L      
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA 104

Query: 57  -TSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSI 113
              L       Q +  L VL LE    L+SL   I  +   L TL +S   NL ++    
Sbjct: 105 IRYLPP--HVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDT 160

Query: 114 -ERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSG--------CSNLQRLP---NEL 161
            +  +SL  L L +  RL  +   +  + SL   N+S            ++ L    N +
Sbjct: 161 FQATTSLQNLQLSSN-RLTHVDLSL--IPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217

Query: 162 GNLEA-----LKELKAEGIAIREVPSSIVCLKNLGRLSFES--FKELPE-CLGQLSSLRI 213
             +       L  LK +   + +    ++    L  +       +++      ++  L  
Sbjct: 218 NVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276

Query: 214 LFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPE 250
           L++  N    +      +  L  L +S+   L  +  
Sbjct: 277 LYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVER 312

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 46/238 (19%), Positives = 80/238 (33%), Gaps = 23/238 (9%)

Query: 21  RLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGC--TSLLETHSSIQYLNKLIVLN 76
            L N K +   +S  + K+P   L     +E L         +     +  Y + +  L 
Sbjct: 43  TLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEI--DTYAFAYAHTIQKLY 99

Query: 77  LEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSI-ERLSSLILLNLRNCSRLEGL 133
           +     +  L   +  ++  L  L+L    +L  LP  I      L  L++ N   LE +
Sbjct: 100 MGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERI 156

Query: 134 PSKI-CKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGR 192
                    SL+ L LS    L  +   L  + +L         +  +   I  ++ L  
Sbjct: 157 EDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHANVSYNLLSTLAIPI-AVEEL-D 211

Query: 193 LSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPE 250
            S  S   +         L IL L  NN       ++    L  + +SY   L+ +  
Sbjct: 212 ASHNSINVVRG--PVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN-ELEKIMY 265

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 74.7 bits (184), Expect = 9e-15
 Identities = 39/224 (17%), Positives = 85/224 (37%), Gaps = 23/224 (10%)

Query: 64  SSIQYLNKLIVLNLEH-CRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSI-ERLSSLIL 121
           S++QY      ++++   + +      I L + K +       + KLP+++ +    + L
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQVEL 73

Query: 122 LNLRNCSRLEGLPSKI-CKLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEGIAIRE 179
           LNL +  ++E + +       ++++L +     ++ LP     N+  L  L  E   +  
Sbjct: 74  LNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 180 VPSSIVC-LKNLGRLSFES--FKELP-ECLGQLSSLRILFLDKNNFERIPESIICLSHLY 235
           +P  I      L  LS  +   + +  +     +SL+ L L  N    +  S+  +  L+
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLF 189

Query: 236 WLRISYCERLKSLPELP---------CDLSDIEAHCCSSLEALS 270
              +SY   L +L               ++ +       L  L 
Sbjct: 190 HANVSYN-LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 232

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 22/148 (14%), Positives = 58/148 (39%), Gaps = 8/148 (5%)

Query: 109 LPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE-LGNLEAL 167
           + S+++       +++   ++      +   L + + +       +++LP   L +   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQV 71

Query: 168 KELKAEGIAIREVPSSI-VCLKNLGRL--SFESFKELPE-CLGQLSSLRILFLDKNNFER 223
           + L    + I E+ +        + +L   F + + LP      +  L +L L++N+   
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 224 IPESIIC-LSHLYWLRISYCERLKSLPE 250
           +P  I      L  L +S    L+ + +
Sbjct: 132 LPRGIFHNTPKLTTLSMSNN-NLERIED 158

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.3 bits (214), Expect = 8e-19
 Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 13/226 (5%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
           N + +    S++         L  +  L+   +  +T I  +    NL  L  +     +
Sbjct: 20  NAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDN--QI 75

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLI 120
              + ++ L K+  L L     L ++S    L+S+KTL L+  S  +   + +  LS+L 
Sbjct: 76  TDLAPLKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLT--STQITDVTPLAGLSNLQ 132

Query: 121 LLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV 180
           +L L    ++  +   +  L +L+ L++     +  L   L NL  L  LKA+   I ++
Sbjct: 133 VLYLDLN-QITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDNKISDI 188

Query: 181 PSSIVCLKNLGRLSFESFK-ELPECLGQLSSLRILFLDKNNFERIP 225
            S +  L NL  +  ++ +      L   S+L I+ L        P
Sbjct: 189 -SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQP 233

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.7 bits (189), Expect = 1e-15
 Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 14/230 (6%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            + +L    + +  + +GVQ L NL  L L  +  +T +  L   T +  L   G    L
Sbjct: 42  GITTLSAFGTGVTTI-EGVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGN--PL 97

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLI 120
           +  S+I  L  +  L+L   + +T ++    L +L+ L L    N +   S +  L++L 
Sbjct: 98  KNVSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLD--LNQITNISPLAGLTNLQ 154

Query: 121 LLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV 180
            L++ N  ++  L   +  L  L  L       +  +   L +L  L E+  +   I +V
Sbjct: 155 YLSIGNA-QVSDLTP-LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQISDV 210

Query: 181 PSSIVCLKNLGRLSFES--FKELPECLGQLSSLRILFLDKNNFERIPESI 228
            S +    NL  ++  +      P        +  +    +     P +I
Sbjct: 211 -SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 43/214 (20%), Positives = 85/214 (39%), Gaps = 19/214 (8%)

Query: 69  LNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCS 128
           L   I +       +T   T   L+ + TL   G   +  +   ++ L++LI L L++  
Sbjct: 18  LANAIKIAAGKSN-VTDTVTQADLDGITTLSAFGT-GVTTI-EGVQYLNNLIGLELKDN- 73

Query: 129 RLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLK 188
           ++  L   +  L  +  L LSG   L+ +   +  L+++K L      I +V + +  L 
Sbjct: 74  QITDLAP-LKNLTKITELELSGN-PLKNVSA-IAGLQSIKTLDLTSTQITDV-TPLAGLS 129

Query: 189 NLGRLSFES--FKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLK 246
           NL  L  +      +   L  L++L+ L +       +   +  LS L  L+     ++ 
Sbjct: 130 NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDN-KIS 186

Query: 247 SLPELPCDLS-----DIEAHCCSSLEALSGLSIL 275
            +  L   L       ++ +  S +  L+  S L
Sbjct: 187 DISPL-ASLPNLIEVHLKNNQISDVSPLANTSNL 219

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.8 bits (218), Expect = 1e-18
 Identities = 56/287 (19%), Positives = 102/287 (35%), Gaps = 30/287 (10%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLA----TNLESLTFRGC 56
            L SL +  +     +K V  L +L +L+LS +  L+     S +     +L  L     
Sbjct: 329 FLKSLTLTMNKGSISFKKVA-LPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 57  TSLLETHSSIQYLNKLIVLNLEHCR--SLTSLSTSIHLESLKTLILSGCSNLMKLPSSIE 114
              +   ++   L +L  L+ +H     +T  S  + LE L  L +S  +  +       
Sbjct: 387 -GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 115 RLSSLILLNLRNCSRLEGLPSKI-CKLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKA 172
            L+SL  L +   S  +   S +     +L  L+LS C  L+++       L  L+ L  
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNM 504

Query: 173 EGIAIREVP-SSIVCLKNLGRL--SFESFKELPEC-LGQLSSLRILFLDKNNFERIPESI 228
               +  +  S    L +L  L  SF   +           SL    L  N+        
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA------ 558

Query: 229 ICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSIL 275
            C+              + + E    L ++E   C++   ++   +L
Sbjct: 559 -CICEHQKFL-------QWVKEQKQFLVNVEQMTCATPVEMNTSLVL 597

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.1 bits (198), Expect = 4e-16
 Identities = 47/290 (16%), Positives = 90/290 (31%), Gaps = 32/290 (11%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
             +SL+M  + I  +     + + L  L L  + + + I    L         R      
Sbjct: 182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKL---------PS 111
           +   +++     I+  L          T  +  S   +     +N+  +           
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE 301

Query: 112 SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELK 171
            + +      L++  C +L+  P+    L  L+ L L+   N   +  +   L +L  L 
Sbjct: 302 DVPKHFKWQSLSIIRC-QLKQFPTL--DLPFLKSLTLTM--NKGSISFKKVALPSLSYLD 356

Query: 172 AEGIAIREVPS---SIVCLKNLG--RLSFESFKELPECLGQLSSLRILFLDKNNFERIPE 226
               A+        S +   +L    LSF     +      L  L+ L    +  +R+ E
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE 416

Query: 227 SII--CLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSI 274
                 L  L +L ISY                        L +L+ L +
Sbjct: 417 FSAFLSLEKLLYLDISYTN-----------TKIDFDGIFLGLTSLNTLKM 455

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.8 bits (187), Expect = 9e-15
 Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 30/238 (12%)

Query: 23  VNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TSLLETHSSIQYLNKLIVLNLEHC 80
           V            L+K+PD  + ++ +++         L     S    ++L  L+L  C
Sbjct: 11  VPNITYQCMDQ-KLSKVPD-DIPSSTKNIDLSFNPLKILKS--YSFSNFSELQWLDLSRC 66

Query: 81  RSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSK-I 137
             + ++       L  L  LIL+G       P S   L+SL  L       L  L S  I
Sbjct: 67  E-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPI 124

Query: 138 CKLKSLERLNLSGCSNLQR--LPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSF 195
            +L +L++LN++    +    LP    NL  L  +      I+ +  +   L+ L     
Sbjct: 125 GQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND--LQFLRENPQ 181

Query: 196 ESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPC 253
                             L +  N  + I +       L+ L +       ++ +   
Sbjct: 182 --------------VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL 225

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 56/306 (18%), Positives = 103/306 (33%), Gaps = 38/306 (12%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGC- 56
            L  L++    I+ +       L +L +L L+ +  +      S +  T+LE+L      
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETK 115

Query: 57  -TSLLETHSSIQYLNKLIVLNLEHCR--SLTSLSTSIHLESLKTLILSGCSNLMKLPSSI 113
             SL      I  L  L  LN+ H    S    +   +L +L  + LS    +  +  + 
Sbjct: 116 LASLES--FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVND 172

Query: 114 -----ERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE-LGNLEAL 167
                E     + L++     ++ +  +  +   L  L L G  N   +    L NL  L
Sbjct: 173 LQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231

Query: 168 KELKAEGIAIREV-------PSSIVCLKNLGRLSF-----ESFKELPECLGQLSSLRILF 215
              +      ++        PS +  L ++    F       F +       L+++  + 
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291

Query: 216 LDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPC------DLSDIEAHCCSSLEAL 269
           L   + + + +          L I  C +LK  P L         L+  +        AL
Sbjct: 292 LAGVSIKYLEDVPKHFK-WQSLSIIRC-QLKQFPTLDLPFLKSLTLTMNKGSISFKKVAL 349

Query: 270 SGLSIL 275
             LS L
Sbjct: 350 PSLSYL 355

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 87.4 bits (217), Expect = 2e-18
 Identities = 53/244 (21%), Positives = 93/244 (38%), Gaps = 24/244 (9%)

Query: 23  VNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TSLLETHSSIQYLNKLIVLNLEHC 80
           V+ +  + SH   LT++PD  L TN+  L         L    ++    ++L  L++   
Sbjct: 4   VSHEVADCSHL-KLTQVPD-DLPTNITVLNLTHNQLRRLPA--ANFTRYSQLTSLDVGFN 59

Query: 81  RSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSK-I 137
            +++ L   +   L  LK L L           +    ++L  L+L +   ++ + +   
Sbjct: 60  -TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPF 117

Query: 138 CKLKSLERLNLSGCSNLQRL-PNELGNLEALKELKAEGIAIREVPS---SIVCLKNLGRL 193
            K K+L  L+LS    L          LE L+EL      I+ + S    I    +L +L
Sbjct: 118 VKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 194 SFES--FKEL-PECLGQLSSLRILFLDKNNFERIPESIIC----LSHLYWLRISYCERLK 246
              S   KE  P C   +  L  LFL+           +C     + +  L +S   +L 
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLS 235

Query: 247 SLPE 250
           +   
Sbjct: 236 TTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.2 bits (214), Expect = 5e-18
 Identities = 57/286 (19%), Positives = 102/286 (35%), Gaps = 38/286 (13%)

Query: 24  NLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGCT-SLLETHSSIQYLNKLIVLNLEHC 80
            L  LNL+ +  ++KI   + +   +LE L           T    + L  +  + L + 
Sbjct: 382 PLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 81  RSLTSLSTSI--HLESLKTLILSGC--SNLMKLPSSIERLSSLILLNLRNCSRLEGLPSK 136
           +    L+ +    + SL+ L+L      N+   PS  + L +L +L+L N   +  +   
Sbjct: 441 K-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDD 498

Query: 137 -ICKLKSLERLNLSGCSNLQRL---------PNELGNLEALKELKAEGIAIREV-PSSIV 185
            +  L+ LE L+L    NL RL            L  L  L  L  E     E+      
Sbjct: 499 MLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

Query: 186 CLKNLGRLSFES--FKEL-PECLGQLSSLRILFLDKNNFERIPESII--CLSHLYWLRIS 240
            L  L  +         L         SL+ L L KN    + + +      +L  L + 
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 241 Y------CERLKSLP----ELPCDLSDIEAHC-CSSLEALSGLSIL 275
           +      CE +        E   ++ ++ +H  C++     G  + 
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVR 663

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.8 bits (213), Expect = 6e-18
 Identities = 57/291 (19%), Positives = 101/291 (34%), Gaps = 42/291 (14%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSL 59
            L    + +++I+ L+      L N+++LNL  S     I   SL   ++  +F+    L
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL-PKIDDFSFQWLKCL 331

Query: 60  LE-----------THSSIQYLNKLIVLNLEHCR-SLTSLS----TSIHLESLKTLILSGC 103
                          +    L  L  L+L +   SL +L+     S+    L  L L+  
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 104 SNLMKLPSSIERLSSLILLNLRNCSRLEGL--PSKICKLKSLERLNLSGCSNLQRLPNEL 161
                   +   L  L +L+L     +       +   L+++  + LS    LQ   N  
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 162 GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNF 221
             + +L+ L                   L R++ ++    P     L +L IL L  NN 
Sbjct: 451 ALVPSLQRL------------------MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 222 ERIPESIIC-LSHLYWLRISYCERLKSLPELPCDLSDIEA-HCCSSLEALS 270
             I + ++  L  L  L + +   L  L +       I      S L  L+
Sbjct: 493 ANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILN 542

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.8 bits (213), Expect = 7e-18
 Identities = 64/297 (21%), Positives = 115/297 (38%), Gaps = 33/297 (11%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGC- 56
            L SL++  ++I +L   + Q+L  LK LNL H+  L+++ D + A  TNL  L      
Sbjct: 50  QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS 108

Query: 57  -TSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPS-- 111
              +    +       LI L+L H   L+S        LE+L+ L+LS    +  L S  
Sbjct: 109 IQKIKN--NPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNN-KIQALKSEE 164

Query: 112 -SIERLSSLILLNLRNCSRLEGLPSK-ICKLKSLERLNLSGCSNLQRLPNELG---NLEA 166
             I   SSL  L L +  +++         +  L  L L+       L  +L       +
Sbjct: 165 LDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223

Query: 167 LKELKAEGIAIREVPSSIVCLKNLG-------RLSFESFKEL-PECLGQLSSLRILFLDK 218
           ++ L      +    ++      L         LS+ +   +  +    L  L   FL+ 
Sbjct: 224 IRNLSLSNSQLSTTSNTT--FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 219 NNFERIPESIIC-LSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSI 274
           NN + +    +  L ++ +L +      +S+      L  I+      L+ L  L++
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL--ASLPKIDDFSFQWLKCLEHLNM 336

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 84.3 bits (209), Expect = 2e-17
 Identities = 55/276 (19%), Positives = 98/276 (35%), Gaps = 30/276 (10%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGCT 57
           +     +  +S+ ++     Q L  L+HLN+  +  +  I         NL+ L+     
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 58  SLLETHSSIQ----YLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLP- 110
           + L T ++        + L +LNL   + ++ + +     L  L+ L L       +L  
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 111 SSIERLSSLILLNLRNCSRLEGLPSK-ICKLKSLERLNLSGC--SNLQRLPNELGNLEAL 167
                L ++  + L    +   L       + SL+RL L      N+   P+    L  L
Sbjct: 424 QEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 168 KELKAEGIAIREVPSSIVC-LKNLGRLSFES-----------FKELPECLGQLSSLRILF 215
             L      I  +   ++  L+ L  L  +                   L  LS L IL 
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 216 LDKNNFERIPESII-CLSHLYWLRISYCERLKSLPE 250
           L+ N F+ IP  +   L  L  + +     L +LP 
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPA 577

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 55/308 (17%), Positives = 101/308 (32%), Gaps = 70/308 (22%)

Query: 21  RLVNLKHLNLSHSEHLTKIPDLSLA----TNLESLTFRGC--TSLLETHSSIQYLNKLIV 74
              ++++L+LS+S  L+   + +      TNL  L         +     S  +L +L  
Sbjct: 220 ANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN--DSFAWLPQLEY 276

Query: 75  LNLEHCRSLTSLSTSIH-LESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGL 133
             LE+       S S+H L +++ L L    +  K   S+  L  +   + +    LE L
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKR--SFTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 134 -----------PSKICKLKSLERLNLSGC-----------------SNLQRL-------- 157
                       +    L +L+ L+LS                   S L  L        
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 158 ---PNELGNLEALKELKAEGIAIREV--PSSIVCLKNLGRLSFES--FKEL-PECLGQLS 209
               +    L  L+ L      I +         L+N+  +      + +L       + 
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 210 SLRILFLDKNNFERI---PESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSL 266
           SL+ L L +   + +   P     L +L  L +S             ++++I       L
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN-----------NNIANINDDMLEGL 503

Query: 267 EALSGLSI 274
           E L  L +
Sbjct: 504 EKLEILDL 511

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.2 bits (211), Expect = 6e-18
 Identities = 72/344 (20%), Positives = 118/344 (34%), Gaps = 51/344 (14%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESL------ 51
           +L  LE+  + +  +  G    L NL+ L L  +  L  IP       +NL  L      
Sbjct: 57  HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENK 115

Query: 52  -------TFRGCTSLLE-----------THSSIQYLNKLIVLNLEHCRSLTSLSTSI--H 91
                   F+   +L             +H +   LN L  L LE C  LTS+ T    H
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSH 174

Query: 92  LESLKTLILSGCSNLMKLPSSI-ERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSG 150
           L  L  L L    N+  +     +RL  L +L + +   L+ +        +L  L+++ 
Sbjct: 175 LHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 151 CSNLQRLPNE-LGNLEALKELKAEGIAIREVPSSI-VCLKNLGRLSFES--FKELPEC-L 205
           C NL  +P   + +L  L+ L      I  +  S+   L  L  +         +     
Sbjct: 234 C-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292

Query: 206 GQLSSLRILFLDKNNFERIPESIIC-LSHLYWLRISY------CERLKSLPELPCDLSDI 258
             L+ LR+L +  N    + ES+   + +L  L +        C RL  +      L+  
Sbjct: 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC-RLLWVFRRRWRLNFN 351

Query: 259 EAHC-CSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGMICFP 301
                C++ E + G              F    C   R      
Sbjct: 352 RQQPTCATPEFVQGKEFKDFPDVLLPNYF---TCRRARIRDRKA 392

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 58/286 (20%), Positives = 103/286 (36%), Gaps = 41/286 (14%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPD-----------LSLATN- 47
               L++  + IK L +       +L+ L L+ +  ++ +             L L +N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 48  ---LESLTFRGCTSLLETH------SSI-----QYLNKLIVLNLEHCRSLTSLSTSI--H 91
              +    F G ++L +          +     Q L  L  L +     L  +S      
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSG 150

Query: 92  LESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICK-LKSLERLNLS 149
           L SL+ L L  C NL  +P+ ++  L  LI+L LR+   +  +     K L  L+ L +S
Sbjct: 151 LNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEIS 208

Query: 150 GCSNLQRLPNELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFES--FKELPEC-L 205
               L  +         L  L      +  VP  ++  L  L  L+        +    L
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 206 GQLSSLRILFLDKNNFERIPESIIC-LSHLYWLRISYCERLKSLPE 250
            +L  L+ + L       +       L++L  L +S   +L +L E
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 12/133 (9%)

Query: 126 NCSR--LEGLPSKICKLKSLERLNLSGCSNLQRLP-NELGNLEALKELKAEGIAIREVPS 182
            C R     +P  I        L+L     ++ L  +E  +   L+EL+     +  V  
Sbjct: 17  LCHRKRFVAVPEGI--PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEP 73

Query: 183 SIVC-LKNLGRLSFES--FKELP-ECLGQLSSLRILFLDKNNFERIPESIIC-LSHLYWL 237
                L NL  L   S   K +P      LS+L  L + +N    + + +   L +L  L
Sbjct: 74  GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133

Query: 238 RISYCERLKSLPE 250
            +     L  +  
Sbjct: 134 EVGDN-DLVYISH 145

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.7 bits (210), Expect = 7e-18
 Identities = 57/285 (20%), Positives = 99/285 (34%), Gaps = 39/285 (13%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TS 58
            L SL+  +SSI  +  G+++L  L  L  + +  +T + DLS  TNL  L       T+
Sbjct: 43  TLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNN-ITTL-DLSQNTNLTYLACDSNKLTN 99

Query: 59  LLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSS 118
           L      +  L KL  LN +  + LT L  S     L  L  +    L ++   +   + 
Sbjct: 100 L-----DVTPLTKLTYLNCDTNK-LTKLDVS-QNPLLTYLNCARN-TLTEID--VSHNTQ 149

Query: 119 LILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR 178
           L  L+     ++  L   +     L  L+ S    +  L   +   + L  L  +   I 
Sbjct: 150 LTELDCHLNKKITKLD--VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTNNIT 204

Query: 179 EVPSSIVCLKNLGRLSFES--FKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYW 236
           ++   +     L  L   S    E+   +  L+ L       N    +  S   LS L  
Sbjct: 205 KLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVST--LSKLTT 258

Query: 237 LRISYCE-------RLKSLPELPCD----LSDIEAHCCSSLEALS 270
           L     +           L     +    + +++    + L  L 
Sbjct: 259 LHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 46/241 (19%), Positives = 86/241 (35%), Gaps = 26/241 (10%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TS 58
            L +L+   + I +L   V +   L  LN   + ++TK+ DL+    L  L       T 
Sbjct: 171 QLTTLDCSFNKITEL--DVSQNKLLNRLNCDTN-NITKL-DLNQNIQLTFLDCSSNKLTE 226

Query: 59  LLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSS 118
           +      +  L +L   +      LT L  S  L  L TL      +L+++   +   + 
Sbjct: 227 I-----DVTPLTQLTYFDCSVNP-LTELDVS-TLSKLTTLHCIQT-DLLEID--LTHNTQ 276

Query: 119 LILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR 178
           LI      C +++ L   +     L  L+      +  L   L     L  L      + 
Sbjct: 277 LIYFQAEGCRKIKELD--VTHNTQLYLLDCQAA-GITELD--LSQNPKLVYLYLNNTELT 331

Query: 179 EVPSSIVCLKNLGRLSFES--FKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYW 236
           E+  S      L  LS  +   ++    +G++ +L   F  +     +P+  +  + L  
Sbjct: 332 ELDVS--HNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTI 388

Query: 237 L 237
            
Sbjct: 389 A 389

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 50/264 (18%), Positives = 76/264 (28%), Gaps = 46/264 (17%)

Query: 37  TKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLK 96
              PD     N  S              S + L  L  L+  +   +T ++    L  L 
Sbjct: 13  DWFPD----DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSS-ITDMTGIEKLTGLT 67

Query: 97  TLIL----------SGCSNLMKLPSS--------IERLSSLILLNLRNCSRLEGLPSKIC 138
            LI           S  +NL  L           +  L+ L  LN     +L  L   + 
Sbjct: 68  KLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTN-KLTKLD--VS 124

Query: 139 KLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFES- 197
           +   L  LN +    L  +   + +   L EL             +     L  L     
Sbjct: 125 QNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFN 180

Query: 198 -FKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYC-------ERLKSLP 249
              EL   + Q   L  L  D NN  ++  +      L +L  S           L  L 
Sbjct: 181 KITELD--VSQNKLLNRLNCDTNNITKLDLN--QNIQLTFLDCSSNKLTEIDVTPLTQLT 236

Query: 250 ELPCD---LSDIEAHCCSSLEALS 270
              C    L++++    S L  L 
Sbjct: 237 YFDCSVNPLTELDVSTLSKLTTLH 260

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.8 bits (205), Expect = 5e-17
 Identities = 53/242 (21%), Positives = 93/242 (38%), Gaps = 20/242 (8%)

Query: 20  QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH 79
             L N+   +L     + ++ D S     + L      +          L  L  L    
Sbjct: 279 NCLTNVSSFSLVSV-TIERVKDFSYNFGWQHLE---LVNCKFGQFPTLKLKSLKRLTFTS 334

Query: 80  CRSLTSLSTSIHLESLKTLILSGC--SNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKI 137
            +   +  + + L SL+ L LS    S       S    +SL  L+L     +  + S  
Sbjct: 335 NK-GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNF 392

Query: 138 CKLKSLERLNLSGCSNLQRLPNE--LGNLEALKELKAEGIAIREVPSSIVC----LKNLG 191
             L+ LE L+     NL+++       +L  L  L       R   + I      L+ L 
Sbjct: 393 LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL- 450

Query: 192 RLSFESFKE--LPECLGQLSSLRILFLDKNNFERIPESIIC-LSHLYWLRISYCERLKSL 248
           +++  SF+E  LP+   +L +L  L L +   E++  +    LS L  L ++   +LKS+
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSV 509

Query: 249 PE 250
           P+
Sbjct: 510 PD 511

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 55/305 (18%), Positives = 109/305 (35%), Gaps = 35/305 (11%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGCT 57
            L  L++    I+ +  G  Q L +L  L L+ +  +  +   + +  ++L+ L      
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN 111

Query: 58  SLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI---HLESLKTLILSGCSNLMKLP-SSI 113
                +  I +L  L  LN+ H   + S        +L +L+ L LS    +  +  + +
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDL 169

Query: 114 ERLSSLILLNLR---NCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP-NELGNLEALKE 169
             L  + LLNL    + + +  +     K   L +L L    +   +    +  L  L+ 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 170 LKAEGIAIREVPS----SIVCLKNLGRLSFESFK---------ELPECLGQLSSLRILFL 216
            +      R   +        L+ L  L+ E F+         ++ +    L+++    L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 217 DKNNFERIPESIIC--LSHLYWLRISYCE----RLKSLPELPCDLSDIEAHCCSSLEALS 270
                ER+ +        HL  +   + +    +LKSL  L    +  +     S   L 
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL--TFTSNKGGNAFSEVDLP 347

Query: 271 GLSIL 275
            L  L
Sbjct: 348 SLEFL 352

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 56/298 (18%), Positives = 104/298 (34%), Gaps = 47/298 (15%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSL 59
           +  +L++  + ++ L          L+ L+LS    +  I D                  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIED------------------ 69

Query: 60  LETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPS-SIERL 116
                + Q L+ L  L L     + SL+      L SL+ L+     NL  L +  I  L
Sbjct: 70  ----GAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHL 123

Query: 117 SSLILLNL-RNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAE- 173
            +L  LN+  N  +   LP     L +LE L+LS    +Q +    L  L  +  L    
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSL 182

Query: 174 ---GIAIREVPSSIVCLKNLGRLS----FESFKELPECLGQLSSLRILFLDKNNFERIPE 226
                 +  +         L +L+    F+S   +  C+  L+ L +  L    F     
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG- 241

Query: 227 SIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQ 284
                 +L     S  E L +L      L+ ++ +    ++  + L+ + + +  +  
Sbjct: 242 ------NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 13/169 (7%)

Query: 81  RSLTSLSTSIHLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKIC- 138
            +   +  ++   S K L LS    L  L S S      L +L+L  C  ++ +      
Sbjct: 17  LNFYKIPDNLP-FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQ 73

Query: 139 KLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEGIAIREVPSSIVC-LKNLGRLSFE 196
            L  L  L L+G + +Q L       L +L++L A    +  + +  +  LK L  L+  
Sbjct: 74  SLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 197 ----SFKELPECLGQLSSLRILFLDKNNFERIPESIIC-LSHLYWLRIS 240
                  +LPE    L++L  L L  N  + I  + +  L  +  L +S
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 45/261 (17%), Positives = 86/261 (32%), Gaps = 38/261 (14%)

Query: 2   LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLAT-------NLESLTFR 54
            +SL++  + +  +  G  + + L  L L ++     +    +          L    FR
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 55  GCTSLLE-THSSIQYLNKLIVLNLE----HCRSLTSLSTSIHLESLKTLILSGCSNLMKL 109
              +L +   S+++ L  L +               +     L ++ +  L   + + ++
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERV 297

Query: 110 PSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKE 169
                       L L NC      P+   KLKSL+RL  +  SN         +L +L+ 
Sbjct: 298 KD-FSYNFGWQHLELVNCK-FGQFPT--LKLKSLKRLTFT--SNKGGNAFSEVDLPSLEF 351

Query: 170 LKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESII 229
           L                  +L R          +     +SL+ L L  N    +  + +
Sbjct: 352 L------------------DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 393

Query: 230 CLSHLYWLRISYCERLKSLPE 250
            L  L  L   +   LK + E
Sbjct: 394 GLEQLEHLDFQHS-NLKQMSE 413

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.5 bits (204), Expect = 6e-17
 Identities = 43/229 (18%), Positives = 87/229 (37%), Gaps = 16/229 (6%)

Query: 21  RLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78
             V ++ L++    +L        SL   ++ +T       L   S  Q+L  L  L+L 
Sbjct: 284 ETVTIRRLHIPQF-YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342

Query: 79  HCR----SLTSLSTSIHLESLKTLILSGC--SNLMKLPSSIERLSSLILLNLRNCSRLEG 132
                   L + +      SL+TL+LS     ++ K    +  L +L  L++        
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHP 401

Query: 133 LPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGR 192
           +P      + +  LNLS    ++ +   +   + L+ L      +      +  L+ L  
Sbjct: 402 MPDSCQWPEKMRFLNLSST-GIRVVKTCI--PQTLEVLDVSNNNLDSFSLFLPRLQEL-Y 457

Query: 193 LSFESFKELPECLGQLSSLRILFLDKNNFERIPESIIC-LSHLYWLRIS 240
           +S    K LP+       L ++ + +N  + +P+ I   L+ L  + + 
Sbjct: 458 ISRNKLKTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 37/257 (14%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            L+ L      + ++      L  L   N S S+ ++++  +     +  L         
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET-VTIRRLHIPQFYLFY 300

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGC---SNLMKLPSSIER 115
           +  +    L K+  + +E+ + +  +  S   HL+SL+ L LS        +K  +    
Sbjct: 301 DLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 116 LSSLILLNLRNC--SRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAE 173
             SL  L L       ++     +  LK+L  L++S       +P+     E ++ L   
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFL--- 415

Query: 174 GIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSH 233
                              LS    + +  C+    +L +L +  NN +        L  
Sbjct: 416 ------------------NLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFSLF---LPR 452

Query: 234 LYWLRISYCERLKSLPE 250
           L  L IS   +LK+LP+
Sbjct: 453 LQELYISRN-KLKTLPD 468

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 50/298 (16%), Positives = 94/298 (31%), Gaps = 29/298 (9%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSL---ATNLESLTFRGC 56
           +L  L++  + +  L       L +LK+LNL  +     +   SL    TNL++L     
Sbjct: 75  SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 57  TSLLE-THSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSI 113
            +  E        L  L  L ++    L +  +     +  +  L L    +   L    
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192

Query: 114 ERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAE 173
           + LSS+  L LR+ +      S +   +    +                 L  L     E
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 174 GIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIIC-LS 232
              +     ++  L +      +   EL     +  ++R L + +        ++   L 
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELG--KVETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 233 HLYWLRISY----------CERLKSLPELPCDLS-----DIEAHCCSSLEALSGLSIL 275
            +  + +             + LKSL  L  DLS     +      +   A   L  L
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFL--DLSENLMVEEYLKNSACKGAWPSLQTL 366

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 51/291 (17%), Positives = 95/291 (32%), Gaps = 36/291 (12%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGC- 56
            + SL++  + I  +  G  +   NL+ L L  S  +  I   +     +LE L      
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 57  -TSLLETHSSIQYLNKLIVLNLEHCR--SLTSLSTSIHLESLKTLILSGCSNLMKLP-SS 112
            +SL  + S    L+ L  LNL      +L   S   +L +L+TL +       ++    
Sbjct: 86  LSSL--SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 113 IERLSSLILLNLRNCSRLEGLPSK-ICKLKSLERLNLSGCSNLQRLPNELGNLEALKELK 171
              L+SL  L ++    L    S+ +  ++ +  L L    +   L      L +++ L+
Sbjct: 144 FAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

Query: 172 AEGIAIREVPSSIVCLK--------------NLGRLSFESFKELPECLGQLSSLRILFLD 217
                +     S + +                L   SF    +L   + +LS +      
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 218 KNNFERIPESIIC---------LSHLYWLRISYCERLKSLPELPCDLSDIE 259
            N       S               +  L I        L  +   L  ++
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 49/276 (17%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA-------------- 45
           ++  L +  S    L +     L ++++L L  + +L +     L               
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 46  -TNLESLTFRGCTSLLETHSSIQYL-------NKLIVLNLEHCRSLTSLSTSIHLESLKT 97
            + L   +F     LL     +  +       N L   N      ++ L   +   +++ 
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG-KVETVTIRR 290

Query: 98  LILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICK-LKSLERLNLSGC---SN 153
           L +        L +    L  +  + + N S++  +P    + LKSLE L+LS       
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVEN-SKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 154 LQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRI 213
             +     G   +L+ L                   L +    S ++  E L  L +L  
Sbjct: 350 YLKNSACKGAWPSLQTL------------------VLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 214 LFLDKNNFERIPESIICLSHLYWLRISYCERLKSLP 249
           L + +N F  +P+S      + +L +S    ++ + 
Sbjct: 392 LDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVK 426

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 11/141 (7%)

Query: 117 SSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEGI 175
            +  + + R+ S    +PS +    +++ L+LS    +  + +  L     L+ L  +  
Sbjct: 5   DASGVCDGRSRS-FTSIPSGL--TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSS 60

Query: 176 AIREVPSSI-VCLKNLGRLSFE--SFKELP-ECLGQLSSLRILFLDKNNFERIPESIIC- 230
            I  +       L +L  L         L     G LSSL+ L L  N ++ +  + +  
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 231 -LSHLYWLRISYCERLKSLPE 250
            L++L  LRI   E    +  
Sbjct: 121 NLTNLQTLRIGNVETFSEIRR 141

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 82.5 bits (204), Expect = 8e-17
 Identities = 49/258 (18%), Positives = 99/258 (38%), Gaps = 35/258 (13%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGCT 57
           +L  L + ++ I ++       L NL+ LNLS++  L ++   +      +  +  +   
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNH 349

Query: 58  SLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLS 117
             +    + ++L KL  L+L        L+T   + S+  + LSG   L+ LP      +
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNA----LTTIHFIPSIPDIFLSGN-KLVTLPKINLTAN 404

Query: 118 SLILLNLRNCSRLEGLP--SKICKLKSLERLNLSGCSNLQRLPNE--LGNLEALKELKAE 173
            + L   R    LE L     + ++  L+ L L+          +       +L++L   
Sbjct: 405 LIHLSENR----LENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLG 459

Query: 174 GIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESII-CLS 232
              ++    + +C                +    LS L++L+L+ N    +P  +   L+
Sbjct: 460 ENMLQLAWETELC---------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504

Query: 233 HLYWLRISYCERLKSLPE 250
            L  L ++   RL  L  
Sbjct: 505 ALRGLSLNSN-RLTVLSH 521

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 9e-12
 Identities = 47/264 (17%), Positives = 94/264 (35%), Gaps = 29/264 (10%)

Query: 20  QRLVNLKHLNLSHSEHLTKIPDLSLA----TNLESLTFRGC--TSLLETHSSIQYLNKLI 73
               ++         ++      + A    +++  L        SL       + L  L 
Sbjct: 237 ILAHHIMGAGFGFH-NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS--RVFETLKDLK 293

Query: 74  VLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSI-ERLSSLILLNLRNCSRL 130
           VLNL + + +  ++      L++L+ L LS    L +L SS    L  +  ++L+    +
Sbjct: 294 VLNLAYNK-INKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN-HI 350

Query: 131 EGLPSKICK-LKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKN 189
             +  +  K L+ L+ L+L     L  +      + ++ ++   G  +  +P   +    
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDN-ALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANL 405

Query: 190 LGRLSFESFKELPEC--LGQLSSLRILFLDKNNFERIPESIIC--LSHLYWLRISYCERL 245
           +  LS    + L     L ++  L+IL L++N F              L  L +     L
Sbjct: 406 I-HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN-ML 463

Query: 246 KSLPELPCDLSDIEAHCCSSLEAL 269
           +   E        E    S L+ L
Sbjct: 464 QLAWETELCWDVFE--GLSHLQVL 485

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 5e-11
 Identities = 45/271 (16%), Positives = 84/271 (30%), Gaps = 33/271 (12%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGCT 57
               L +  + I+ +       L  L+ L L        I   +     NL  L      
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS- 83

Query: 58  SLLETHSSI-QYLNKLIVLNLEHCR-SLTSLSTSI--HLESLKTLILSGCS-NLMKLPSS 112
            +   H    Q L  L  L L  C  S   L      +L++L  L LS      + L  S
Sbjct: 84  KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 113 IERLSSLILLNLRNCSRLEGLPSKI---CKLKSLERLNLSGCS-------NLQRLPNELG 162
             +L+SL  ++  +  ++  +        + K+L   +L+  S       +  +  N   
Sbjct: 144 FGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 163 NLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE 222
           N+  L+ L   G       +       + +    S             +       +N +
Sbjct: 203 NMV-LEILDVSGNGWTVDITGN-FSNAISKSQAFSLILAH-------HIMGAGFGFHNIK 253

Query: 223 RIPESII---CLSHLYWLRISYCERLKSLPE 250
              ++       S +  L +S+   + SL  
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHG-FVFSLNS 283

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 50/287 (17%), Positives = 91/287 (31%), Gaps = 38/287 (13%)

Query: 20  QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TSLLETHSSIQYLNKLIVLNL 77
            R+   +  NL+       +P   +    E L        ++  T SS  +L +L +L L
Sbjct: 6   GRIAFYRFCNLTQ------VPQ--VLNTTERLLLSFNYIRTV--TASSFPFLEQLQLLEL 55

Query: 78  EHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSI-ERLSSLILLNLRNC--SRLEG 132
               +  ++      +L +L+ L L     +  L     + L  L  L L  C  S    
Sbjct: 56  GSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 133 LPSKICKLKSLERLNLSGCSNLQRLP--NELGNLEALKELKAEGIAIREVPSSIVCLKNL 190
                  LK+L RL+LS    ++ L      G L +LK +      I  V      L+ L
Sbjct: 115 KDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE--LEPL 171

Query: 191 GRLSFESF------------KELPECLGQLS--SLRILFLDKNNFERIPESIICLSHLYW 236
              +   F             +  +C+       L IL +  N +          + +  
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG-NFSNAISK 230

Query: 237 LRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNS 283
            +         +        +I+    ++   L+  S+     S   
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.3 bits (204), Expect = 1e-16
 Identities = 46/233 (19%), Positives = 83/233 (35%), Gaps = 39/233 (16%)

Query: 21  RLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TSLLETHSSIQYLNKLIVLNLE 78
            L  L+ L LS+S     +     + +L SL       +  + T +S+   + L  LN+ 
Sbjct: 75  SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134

Query: 79  HCRSLT---SLSTSIHLESLKTLILSGCSNLMKLPSSIER---LSSLILLNLRNCSRLEG 132
              +L     +S  + L SL+ L LS  S                 L  L +     + G
Sbjct: 135 SN-TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISG 192

Query: 133 -LPSKICKLKSLERLNLSGCSNLQ-RLPNELGNLEALKELKAEGIAIREVPSSIVCLKNL 190
            +   + +  +LE L++S   N    +P  LG+  AL+ L                  ++
Sbjct: 193 DVD--VSRCVNLEFLDVSSN-NFSTGIP-FLGDCSALQHL------------------DI 230

Query: 191 GRLSFESFKELPECLGQLSSLRILFLDKNNFE-RIPESIICLSHLYWLRISYC 242
                    +    +   + L++L +  N F   IP     L  L +L ++  
Sbjct: 231 SGNKLSG--DFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAEN 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.6 bits (197), Expect = 7e-16
 Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 22/230 (9%)

Query: 21  RLVNLKHLNLSHSEHLT-KIPD--LSLATNLESLTFRGC--TSLLETHSSIQYLNKLIVL 75
           ++  LK L+LS +   + ++P+   +L+ +L +L       +  +  +      N L  L
Sbjct: 341 KMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399

Query: 76  NLEHCRSLT-SLSTSI-HLESLKTLILSGCSNLM--KLPSSIERLSSLILLNLRNCSRLE 131
            L++    T  +  ++ +   L +L LS   N +   +PSS+  LS L  L L     LE
Sbjct: 400 YLQNN-GFTGKIPPTLSNCSELVSLHLS--FNYLSGTIPSSLGSLSKLRDLKLWLN-MLE 455

Query: 132 G-LPSKICKLKSLERLNLSGCSNLQ-RLPNELGNLEALKELKAEGIAIR-EVPSSIVCLK 188
           G +P ++  +K+LE L L    +L   +P+ L N   L  +      +  E+P  I  L+
Sbjct: 456 GEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514

Query: 189 NLGRLSFES---FKELPECLGQLSSLRILFLDKNNFE-RIPESIICLSHL 234
           NL  L   +      +P  LG   SL  L L+ N F   IP ++   S  
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.3 bits (191), Expect = 4e-15
 Identities = 62/287 (21%), Positives = 101/287 (35%), Gaps = 75/287 (26%)

Query: 21  RLVNLKHLNLSHSEHLT-KIPDLSLATNLESLTFRGCTSLLETH--SSIQYLNKLIVLNL 77
           R VNL+ L++S + + +  IP L   + L+ L   G    L      +I    +L +LN+
Sbjct: 198 RCVNLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNK--LSGDFSRAISTCTELKLLNI 254

Query: 78  -----------EHCRSLTSLSTS-------------IHLESLKTLILSGCSNLM-KLPSS 112
                         +SL  LS +                ++L  L LSG  +    +P  
Sbjct: 255 SSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPF 313

Query: 113 IERLSSLILLNLRNCSRLEGL--PSKICKLKSLERLNLSG--------------CSNLQR 156
               S L  L L + +   G      + K++ L+ L+LS                ++L  
Sbjct: 314 FGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372

Query: 157 L-----------PNELGN--LEALKELKA-----EGIAIREVPSSIVCLKNLGRLSFE-- 196
           L              L       L+EL        G    ++P ++     L  L     
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFN 428

Query: 197 SFK-ELPECLGQLSSLRILFLDKNNFE-RIPESIICLSHLYWLRISY 241
                +P  LG LS LR L L  N  E  IP+ ++ +  L  L + +
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.9 bits (185), Expect = 2e-14
 Identities = 54/243 (22%), Positives = 90/243 (37%), Gaps = 37/243 (15%)

Query: 9   HSSIKQLWKGVQRLVNLKHLNLSHSEHLT-KIPDLSLATNLESLTFRGCTSLLETHSSIQ 67
             +    W        LKHL +S +  ++  +  +S   NLE L      +       + 
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGN-KISGDVD-VSRCVNLEFLDVSSN-NFSTGIPFLG 220

Query: 68  YLNKLIVLNLEHCRSLT-SLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLR 125
             + L  L++     L+   S +I     LK L +S    +  +P     L SL  L+L 
Sbjct: 221 DCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 277

Query: 126 NCSRLEG-LPSKIC-KLKSLERLNLSGCSNLQ-RLPNELGNLEALKELKAEGIAIREVPS 182
                 G +P  +     +L  L+LSG  +    +P   G+   L+ L            
Sbjct: 278 ENK-FTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESL------------ 323

Query: 183 SIVCLKNLGRLSFESFKELP-ECLGQLSSLRILFLDKNNFE-RIPESII-CLSHLYWLRI 239
                  L   +F    ELP + L ++  L++L L  N F   +PES+    + L  L +
Sbjct: 324 ------ALSSNNFSG--ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375

Query: 240 SYC 242
           S  
Sbjct: 376 SSN 378

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.7 bits (174), Expect = 4e-13
 Identities = 61/230 (26%), Positives = 84/230 (36%), Gaps = 26/230 (11%)

Query: 47  NLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNL 106
           +L S       S +   SS+  L  L  L L +     S+S      SL +L LS  S  
Sbjct: 56  DLSSKPLNVGFSAV--SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLS 113

Query: 107 MKLPS--SIERLSSLILLNLRNCS-RLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL-- 161
             + +  S+   S L  LN+ + +    G  S   KL SLE L+LS  S           
Sbjct: 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173

Query: 162 -GNLEALKELKAEGIAIR-EVPSSIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFL 216
                 LK L   G  I  +V   +    NL  L   S      +P  LG  S+L+ L +
Sbjct: 174 SDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDI 230

Query: 217 DKNNFE-RIPESIICLSHLYWLRISYC--------ERLKSLPELPCDLSD 257
             N        +I   + L  L IS            LKSL  L   L++
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL--SLAE 278

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 50/274 (18%), Positives = 87/274 (31%), Gaps = 77/274 (28%)

Query: 21  RLVNLKHLNLSHSEHLT-KIPD-LSLATNLESLTFRGCTSLLETH--SSIQYLNKLIVLN 76
            L  L+ L L  +  L  +IP  L     LE+L        L     S +     L  ++
Sbjct: 440 SLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFN--DLTGEIPSGLSNCTNLNWIS 496

Query: 77  LEHCRSLT-SLSTSI-HLESLKTLILSG-------------CSNLMKL-----------P 110
           L + R LT  +   I  LE+L  L LS              C +L+ L           P
Sbjct: 497 LSNNR-LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

Query: 111 SSIERLSSLILLN---------LRNCSRLEGL-------------PSKICKLKSLERLNL 148
           +++ + S  I  N         ++N    +                 ++ +L +    N+
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615

Query: 149 SGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQL 208
           +             N  ++  L                  ++          +P+ +G +
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFL------------------DMSYNMLSG--YIPKEIGSM 655

Query: 209 SSLRILFLDKNNFE-RIPESIICLSHLYWLRISY 241
             L IL L  N+    IP+ +  L  L  L +S 
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 9e-07
 Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 22/162 (13%)

Query: 115 RLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEG 174
           +++S+ L +         + S +  L  LE L LS   ++    +      +L  L    
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS-HINGSVSGFKCSASLTSLDLSR 109

Query: 175 IAIREVPSSIVCLKNLGRLSF-------ESFKELPECLGQLSSLRILFLDKNNFE-RIPE 226
            ++    +++  L +   L F         F        +L+SL +L L  N+       
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 227 SIIC---LSHLYWLRISYCE--------RLKSLPELPCDLSD 257
             +       L  L IS  +        R  +L  L  D+S 
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL--DVSS 209

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.0 bits (195), Expect = 5e-16
 Identities = 62/250 (24%), Positives = 94/250 (37%), Gaps = 37/250 (14%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSL 59
           N   L +  + I+ +     + L +L+ L LS + H+  I             F G    
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEI---------GAFNG---- 110

Query: 60  LETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSI-ERL 116
                    L  L  L L   R LT++      +L  LK L L     +  +PS    R+
Sbjct: 111 ---------LANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRI 159

Query: 117 SSLILLNLRNCSRLEGLPSKI-CKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGI 175
            SL  L+L    RL  +       L +L  LNL+ C NL+ +P  L  L  L EL   G 
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGN 217

Query: 176 AIREVPS-SIVCLKNLGRLSFES--FKELPEC-LGQLSSLRILFLDKNNFERIPESIIC- 230
            +  +   S   L +L +L       + +       L SL  + L  NN   +P  +   
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277

Query: 231 LSHLYWLRIS 240
           L HL  + + 
Sbjct: 278 LHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 51/235 (21%), Positives = 84/235 (35%), Gaps = 38/235 (16%)

Query: 24  NLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TSLLETHSSIQYLNKLIVLNLEHCR 81
               +      +L ++PD  ++TN   L         +    +S ++L  L +L L    
Sbjct: 44  QFSKVICVRK-NLREVPD-GISTNTRLLNLHENQIQIIKV--NSFKHLRHLEILQLSRNH 99

Query: 82  SLTSLSTSI--HLESLKTLILSGCSNLMKLPSSI-ERLSSLILLNLRNCSRLEGLPSKI- 137
            + ++       L +L TL L     L  +P+     LS L  L LRN   +E +PS   
Sbjct: 100 -IRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAF 156

Query: 138 CKLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFE 196
            ++ SL RL+L     L  +       L  L+ L      +RE+P+              
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-------------- 202

Query: 197 SFKELPECLGQLSSLRILFLDKNNFERIPESII-CLSHLYWLRISYCERLKSLPE 250
                   L  L  L  L L  N+   I       L HL  L +    +++ +  
Sbjct: 203 --------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIER 248

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 12/157 (7%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGCT 57
            L  L + ++ I+ +      R+ +L+ L+L   + L+ I + +    +NL  L    C 
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC- 195

Query: 58  SLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPS-SIE 114
             L    ++  L KL  L+L     L+++       L  L+ L +     +  +   + +
Sbjct: 196 -NLREIPNLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFD 252

Query: 115 RLSSLILLNLRNCSRLEGLPSKICK-LKSLERLNLSG 150
            L SL+ +NL +   L  LP  +   L  LER++L  
Sbjct: 253 NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHH 288

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.2 bits (193), Expect = 9e-16
 Identities = 59/250 (23%), Positives = 98/250 (39%), Gaps = 37/250 (14%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSL 59
           N   L +  ++I+ +     + L +L+ L L  +  + +I             F G    
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEV---------GAFNG---- 121

Query: 60  LETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSI-ERL 116
                    L  L  L L     LT + +    +L  L+ L L     +  +PS    R+
Sbjct: 122 ---------LASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRV 170

Query: 117 SSLILLNLRNCSRLEGLPSKI-CKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGI 175
            SL+ L+L    +LE +       L +L+ LNL  C N++ +P  L  L  L+EL+  G 
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGN 228

Query: 176 AIREVPS-SIVCLKNLGRLSFES--FKELPEC-LGQLSSLRILFLDKNNFERIPESIIC- 230
              E+   S   L +L +L   +     +       L+SL  L L  NN   +P  +   
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288

Query: 231 LSHLYWLRIS 240
           L +L  L + 
Sbjct: 289 LRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 57/245 (23%), Positives = 87/245 (35%), Gaps = 58/245 (23%)

Query: 24  NLKHLNLSHSEHLTKIPD--------LSLATN----LESLTFRGCTSLLETHSSIQYLNK 71
               +  +    L+++P         L+L  N    +++ TFR              L+ 
Sbjct: 55  QFSKVVCTRR-GLSEVPQGIPSNTRYLNLMENNIQMIQADTFRH-------------LHH 100

Query: 72  LIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSI-ERLSSLILLNLRNCS 128
           L VL L     +  +       L SL TL L     L  +PS   E LS L  L LRN  
Sbjct: 101 LEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNN- 157

Query: 129 RLEGLPSKI-CKLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEGIAIREVPSSIVC 186
            +E +PS    ++ SL RL+L     L+ +       L  LK L      I+++P+    
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN---- 213

Query: 187 LKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCERL 245
                             L  L  L  L +  N+F  I   S   LS L  L +    ++
Sbjct: 214 ------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QV 254

Query: 246 KSLPE 250
             +  
Sbjct: 255 SLIER 259

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 12/157 (7%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGCT 57
            L  L + ++ I+ +      R+ +L  L+L   + L  I + +     NL+ L    C 
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC- 206

Query: 58  SLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPS-SIE 114
             ++   ++  L  L  L +        +       L SLK L +     +  +   + +
Sbjct: 207 -NIKDMPNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFD 263

Query: 115 RLSSLILLNLRNCSRLEGLPSKICK-LKSLERLNLSG 150
            L+SL+ LNL +   L  LP  +   L+ L  L+L  
Sbjct: 264 GLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH 299

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 50/283 (17%), Positives = 95/283 (33%), Gaps = 42/283 (14%)

Query: 24  NLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGC--TSLLETHSSIQYLNKLIVLNLEH 79
           +   L L  +  L  +P       T L  L+      +       S      L  L+L  
Sbjct: 29  SATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 80  CRSLTSLSTS-IHLESLKTLILSGCSNLMKLPSS--IERLSSLILLNLRNCSRLEGLPSK 136
              + ++S++ + LE L+ L      NL ++        L +LI L++ +        + 
Sbjct: 88  NG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNG 144

Query: 137 ICK-LKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEGIAIREVPSSI-VCLKNLGRL 193
           I   L SLE L ++G S  +    +    L  L  L      + ++  +    L +L  L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204

Query: 194 SFES--FKELPEC-LGQLSSLRILFLDKNNFERIPES------------------IICLS 232
           +     F  L       L+SL++L    N+     +                     C  
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264

Query: 233 HLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSIL 275
                     + +K   +L  ++  +E   C++     G+ +L
Sbjct: 265 EHQSFL----QWIKDQRQLLVEVERME---CATPSDKQGMPVL 300

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 49/237 (20%), Positives = 87/237 (36%), Gaps = 38/237 (16%)

Query: 24  NLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TSLLETHSSIQYLNKLIVLNLEHCR 81
           +   +  +    LT +P   + ++   L        SL   H     L +L  L+L    
Sbjct: 8   SGTEIRCNSK-GLTSVPT-GIPSSATRLELESNKLQSL--PHGVFDKLTQLTKLSLSSNG 63

Query: 82  SLTSLSTS----IHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSK- 136
            L+             SLK L LS    ++ + S+   L  L  L+ ++   L+ +    
Sbjct: 64  -LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFS 120

Query: 137 -ICKLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLS 194
               L++L  L++S   + +   N     L +L+ LK  G              N  + +
Sbjct: 121 VFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAG--------------NSFQEN 165

Query: 195 FESFKELPECLGQLSSLRILFLDKNNFERIPESI-ICLSHLYWLRISYCERLKSLPE 250
           F     LP+   +L +L  L L +   E++  +    LS L  L +S+     SL  
Sbjct: 166 F-----LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT 216

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 26/154 (16%), Positives = 61/154 (39%), Gaps = 7/154 (4%)

Query: 22  LVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR 81
           + +L ++ L++   +T +  +  A N++ LT          ++ I  L+ L  L +    
Sbjct: 43  MNSLTYITLANIN-VTDLTGIEYAHNIKDLTINNIH--ATNYNPISGLSNLERLRIMGKD 99

Query: 82  SLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKL 140
             +    ++  L SL  L +S  ++   + + I  L  +  ++L     +  +   +  L
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTL 158

Query: 141 KSLERLNLSGCSNLQRLPNELGNLEALKELKAEG 174
             L+ LN+     +      + +   L +L A  
Sbjct: 159 PELKSLNIQFD-GVHDYRG-IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 6/151 (3%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
           +L  + + + ++  L  G++   N+K L +++  H T    +S  +NLE L   G     
Sbjct: 45  SLTYITLANINVTDL-TGIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTS 102

Query: 61  ETHSSIQYLNKLIVLNLEHCR-SLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSL 119
           +   ++  L  L +L++ H     + L+    L  + ++ LS    +  +   ++ L  L
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPEL 161

Query: 120 ILLNLRNCSRLEGLPSKICKLKSLERLNLSG 150
             LN++    +      I     L +L    
Sbjct: 162 KSLNIQFD-GVHDY-RGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 5e-14
 Identities = 33/175 (18%), Positives = 70/175 (40%), Gaps = 12/175 (6%)

Query: 24  NLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGC--TSLLETHSSIQYLNKLIVLNLEH 79
             K   L+     +   +++ A   +L  +T      T L    + I+Y + +  L + +
Sbjct: 21  TFKAY-LNGLLGQSSTANITEAQMNSLTYITLANINVTDL----TGIEYAHNIKDLTINN 75

Query: 80  CRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICK 139
               T+ +    L +L+ L + G         ++  L+SL LL++ + +  + + +KI  
Sbjct: 76  IH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 140 LKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLS 194
           L  +  ++LS    +  +   L  L  LK L  +   + +    I     L +L 
Sbjct: 135 LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLY 187

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 36/197 (18%), Positives = 59/197 (29%), Gaps = 35/197 (17%)

Query: 74  VLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGL 133
            LN    +S T+  T   + SL  + L+   N+  L + IE   ++  L + N       
Sbjct: 25  YLNGLLGQSSTANITEAQMNSLTYITLANI-NVTDL-TGIEYAHNIKDLTINNI-HATNY 81

Query: 134 PSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRL 193
            + I  L +LERL + G          L  L +L  L     A  +              
Sbjct: 82  -NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI------------ 128

Query: 194 SFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYC--------ERL 245
                      +  L  +  + L  N        +  L  L  L I +         E  
Sbjct: 129 --------LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDF 180

Query: 246 KSLPELPCD---LSDIE 259
             L +L      +   +
Sbjct: 181 PKLNQLYAFSQTIGGKK 197

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.2 bits (185), Expect = 5e-15
 Identities = 64/316 (20%), Positives = 107/316 (33%), Gaps = 29/316 (9%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGCT 57
           N + L    + ++ + KG      +L+ + +S ++ L  I     +    L  +      
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 58  SLLETHSSI-QYLNKLIVLNLEHCRSLTSLS--TSIHLESLKTLILSGCSNLMKLPS-SI 113
           +LL  +    Q L  L  L + +   +  L     IH      L +    N+  +   S 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 114 ERLSS-LILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE-LGNLEALKELK 171
             LS   ++L L     ++ + +       L+ LNLS  +NL+ LPN+          L 
Sbjct: 150 VGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 172 AEGIAIREVPSSI-VCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIIC 230
                I  +PS     LK L   S  + K+LP  L +L +L    L             C
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT-YPSH-------C 259

Query: 231 LSHLYWLRI-----SYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQC 285
            +   W R        C +     E+             + +  S  S  F  T      
Sbjct: 260 CAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYT---E 316

Query: 286 FDFQHCEVPRGMICFP 301
           FD+  C     + C P
Sbjct: 317 FDYDLCNEVVDVTCSP 332

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 37/225 (16%), Positives = 66/225 (29%), Gaps = 52/225 (23%)

Query: 32  HSEHLTKIPDLSLATNLESLTFRGC--TSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTS 89
               +T+IP   L  N   L F       +     +      L  + +     L  +   
Sbjct: 17  QESKVTEIPS-DLPRNAIELRFVLTKLRVI--QKGAFSGFGDLEKIEISQNDVLEVIEAD 73

Query: 90  I--HLESLKTLILSGCSNLMKLPSSI-ERLSSLILLNLRNCSRLEGLPSKI-CKLKSLER 145
           +  +L  L  + +   +NL+ +     + L +L  L + N   ++ LP            
Sbjct: 74  VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVL 132

Query: 146 LNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECL 205
           L++    N+  +                                       SF  L    
Sbjct: 133 LDIQDNINIHTIERN------------------------------------SFVGLS--- 153

Query: 206 GQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPE 250
                  IL+L+KN  + I  S    + L  L +S    L+ LP 
Sbjct: 154 ---FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.3 bits (183), Expect = 6e-15
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 21/197 (10%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TS 58
           ++  +   +S IK + +G+Q L N+  L L+ +  LT I  L+   NL  L         
Sbjct: 47  SIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENKVKD 104

Query: 59  LLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSS 118
           L    SS++ L KL  L+LEH   ++ ++  +HL  L++L L    N +   + + RL+ 
Sbjct: 105 L----SSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGN--NKITDITVLSRLTK 157

Query: 119 LILLNLRNCSRLEGLPSKICKLKSLERLNLSGC--SNLQRLPNELGNLEALKELKAEGIA 176
           L  L+L +  ++  +   +  L  L+ L LS    S+L+     L  L+ L  L+     
Sbjct: 158 LDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNHISDLR----ALAGLKNLDVLELFSQE 211

Query: 177 IREVPSSIVCLKNLGRL 193
               P +     NL   
Sbjct: 212 CLNKPINH--QSNLVVP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 19/196 (9%)

Query: 64  SSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLN 123
            S     + I  NL+  +S+T   T   L S+  +I +   ++  +   I+ L ++  L 
Sbjct: 18  FSDDAFAETIKDNLKK-KSVTDAVTQNELNSIDQIIANNS-DIKSV-QGIQYLPNVTKLF 74

Query: 124 LRNC--SRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVP 181
           L     + ++ L      LK+L  L L     ++ L + L +L+ LK L  E   I ++ 
Sbjct: 75  LNGNKLTDIKPL----ANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHNGISDI- 127

Query: 182 SSIVCLKNLGRLSFESFK-ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRIS 240
           + +V L  L  L   + K      L +L+ L  L L+ N    I   +  L+ L  L +S
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 186

Query: 241 YC-----ERLKSLPEL 251
                    L  L  L
Sbjct: 187 KNHISDLRALAGLKNL 202

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 13/163 (7%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TS 58
            L SL + H+ I  +  G+  L  L+ L L ++  +T I  LS  T L++L+      + 
Sbjct: 113 KLKSLSLEHNGISDI-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISD 170

Query: 59  LLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSS 118
           +      +  L KL  L L     ++ L     L++L  L L     L K  +    L  
Sbjct: 171 I----VPLAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 225

Query: 119 LILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL 161
              +   + S +   P  I      E+ N+    +L    NE+
Sbjct: 226 PNTVKNTDGSLVT--PEIISDDGDYEKPNVK--WHLPEFTNEV 264

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 49/256 (19%), Positives = 100/256 (39%), Gaps = 45/256 (17%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--T 57
           NL +L + ++ I ++  G    LV L+ L LS +  L ++P+  +   L+ L       T
Sbjct: 77  NLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE-KMPKTLQELRVHENEIT 134

Query: 58  SLLETHSSIQYLNKLIVLNLEHCR-SLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIE 114
            + +  S    LN++IV+ L       + +       ++ L  + ++   N+  +P  + 
Sbjct: 135 KVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL- 190

Query: 115 RLSSLILLNLRNCSRLEGLPSKICK-LKSLERLNLSGCSNLQRLPNE-LGNLEALKELKA 172
              SL  L+L    ++  + +   K L +L +L LS   ++  + N  L N   L+EL  
Sbjct: 191 -PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLREL-- 245

Query: 173 EGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIIC-- 230
                               L+     ++P  L     +++++L  NN   I  +  C  
Sbjct: 246 -------------------HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 231 -----LSHLYWLRISY 241
                 +    + +  
Sbjct: 287 GYNTKKASYSGVSLFS 302

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 47/228 (20%), Positives = 86/228 (37%), Gaps = 22/228 (9%)

Query: 11  SIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLN 70
            I Q+      L N    NL     +T +      + +++         +++ + +Q+  
Sbjct: 8   PINQV-FPDPGLANAVKQNLGKQ-SVTDLVSQKELSGVQNFNGDNS--NIQSLAGMQFFT 63

Query: 71  KLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLIL--LNLRNC- 127
            L  L+L H + ++ LS    L  L+ L ++      +L  ++  + S  L  L L N  
Sbjct: 64  NLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRN----RL-KNLNGIPSACLSRLFLDNNE 117

Query: 128 -SRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVC 186
               + L      LK+LE L++     L+ +   LG L  L+ L   G  I      +  
Sbjct: 118 LRDTDSL----IHLKNLEILSIRNN-KLKSIVM-LGFLSKLEVLDLHGNEITNT-GGLTR 170

Query: 187 LKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHL 234
           LK +  +     K + E +     L I    K+   R   S   +S+ 
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW-ISPYYISNG 217

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 14/190 (7%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
           N V   +   S+  L    + L  +++ N  +S ++  +  +   TNL+ L        +
Sbjct: 20  NAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHN--QI 75

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLI 120
              S ++ L KL  L++   R L +L+  I    L  L L    N ++   S+  L +L 
Sbjct: 76  SDLSPLKDLTKLEELSVNRNR-LKNLN-GIPSACLSRLFLDN--NELRDTDSLIHLKNLE 131

Query: 121 LLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV 180
           +L++RN  +L+ +   +  L  LE L+L G   +      L  L+ +  +   G      
Sbjct: 132 ILSIRNN-KLKSIVM-LGFLSKLEVLDLHGN-EITNTGG-LTRLKKVNWIDLTGQKCVNE 187

Query: 181 PSSIVCLKNL 190
           P        L
Sbjct: 188 PVKY--QPEL 195

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 14/173 (8%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            + +    +S+I+ L  G+Q   NLK L+LSH++ ++ +  L   T LE L+       L
Sbjct: 42  GVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRN--RL 97

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLI 120
           +  + I     L  L L++   L    + IHL++L+ L +   +N +K    +  LS L 
Sbjct: 98  KNLNGIPSAC-LSRLFLDNNE-LRDTDSLIHLKNLEILSIR--NNKLKSIVMLGFLSKLE 153

Query: 121 LLNLRNC--SRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELK 171
           +L+L     +   GL     +LK +  ++L+G   +         L     +K
Sbjct: 154 VLDLHGNEITNTGGL----TRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 42/229 (18%), Positives = 78/229 (34%), Gaps = 41/229 (17%)

Query: 29  NLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLST 88
           ++     + ++       N            +    S + L+ +   N ++   + SL+ 
Sbjct: 2   SIQRPTPINQVFPDPGLANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSN-IQSLAG 58

Query: 89  SIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNC--SRLEGLPSKICKLKSLERL 146
                +LK L LS    +  L S ++ L+ L  L++       L G+         L RL
Sbjct: 59  MQFFTNLKELHLSHN-QISDL-SPLKDLTKLEELSVNRNRLKNLNGI-----PSACLSRL 111

Query: 147 NLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLG 206
            L     L+   + L +L+ L+ L      ++ +                        LG
Sbjct: 112 FLDNN-ELRDTDS-LIHLKNLEILSIRNNKLKSI----------------------VMLG 147

Query: 207 QLSSLRILFLDKNNFERIPESIICLSHLYWLRISYC----ERLKSLPEL 251
            LS L +L L  N        +  L  + W+ ++      E +K  PEL
Sbjct: 148 FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVKYQPEL 195

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 59/255 (23%), Positives = 101/255 (39%), Gaps = 44/255 (17%)

Query: 16  WKGV-----QRLVNLKHLNLSHSEHLT---KIPD-LSLATNLESLTFRGCTSLL-ETHSS 65
           W GV      +   + +L+LS   +L     IP  L+    L  L   G  +L+     +
Sbjct: 38  WLGVLCDTDTQTYRVNNLDLS-GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96

Query: 66  IQYLNKLIVLNLEHCRSLTSLSTSI-----HLESLKTLILSGCSNLM-KLPSSIERLSSL 119
           I  L +L  L + H    T++S +I      +++L TL  S    L   LP SI  L +L
Sbjct: 97  IAKLTQLHYLYITH----TNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNL 151

Query: 120 ILLNLRNCSRLEG-LPSKICKLKSLER-LNLSGCSNLQ-RLPNELGNLEALKEL-----K 171
           + +     +R+ G +P        L   + +S    L  ++P    NL  L  +      
Sbjct: 152 VGITFDG-NRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVDLSRNM 208

Query: 172 AEGIAIREVPSSIVCLKNLGRLSFE----SFKELPECLGQLSSLRILFLDKNNFE-RIPE 226
            EG    +        KN  ++       +F +L + +G   +L  L L  N     +P+
Sbjct: 209 LEG----DASVLFGSDKNTQKIHLAKNSLAF-DLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262

Query: 227 SIICLSHLYWLRISY 241
            +  L  L+ L +S+
Sbjct: 263 GLTQLKFLHSLNVSF 277

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 49/260 (18%), Positives = 96/260 (36%), Gaps = 28/260 (10%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGC- 56
            + SL++ ++ I  +     QR VNL+ L L+ +  +  I + S +   +LE L      
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 57  -TSLLETHSSIQYLNKLIVLNLEHCR--SLTSLSTSIHLESLKTLILSGCSNLMKLPSSI 113
            ++L  + S  + L+ L  LNL      +L   S   HL  L+ L +       K+    
Sbjct: 112 LSNL--SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 114 -ERLSSLILLNLRNCSRLEGLPSKI-CKLKSLERLNLSGCSNLQRLPNEL-GNLEALKEL 170
              L+ L  L +     L+    K    ++++  L L        L         +++ L
Sbjct: 170 FAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECL 227

Query: 171 KAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIIC 230
           +     +            L      S         +  + R + +   +  ++ + +  
Sbjct: 228 ELRDTDLDTFH-----FSELSTGETNSLI-------KKFTFRNVKITDESLFQVMKLLNQ 275

Query: 231 LSHLYWLRISYCERLKSLPE 250
           +S L  L  S   +LKS+P+
Sbjct: 276 ISGLLELEFSRN-QLKSVPD 294

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 71.5 bits (175), Expect = 2e-13
 Identities = 45/282 (15%), Positives = 87/282 (30%), Gaps = 22/282 (7%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
           N    E    S K L    +   +L  + +   E L  +     A NLE          +
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI 257

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSI---HLESLKTLILSGCSNLM-KLPSSIERL 116
                   L     L       +      I       ++ L L           + I++ 
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC 317

Query: 117 SSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNL--EALKELKAEG 174
            +L +L  RN     GL       K L+RL +   ++ Q + +E G +    L  L    
Sbjct: 318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377

Query: 175 IAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHL 234
             +  +  ++        ++ ES + +   L  L   R++ LD+            +  L
Sbjct: 378 QELEYM--AVYV----SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431

Query: 235 YWLRISYCERLKSLPELPC--DLSDIE----AHCCSSLEALS 270
               +  C++L+          L+D+          ++  + 
Sbjct: 432 ----LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 43/284 (15%), Positives = 88/284 (30%), Gaps = 42/284 (14%)

Query: 24  NLKHLNLSHSEHLTKIPDLSLA---TNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC 80
           +L+ L L      T    LS+      +++L     +   +    +  L        +H 
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL-------AQHN 191

Query: 81  RSLTSLSTSI----------------HLESLKTLILSGCSNLMKLPSSIERLSSLILLNL 124
            SL  L+  +                +  SL ++ +     L +L    +  ++L     
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCG 250

Query: 125 RNCSRLEGLPSKICKLKSLERLNLSGCSNL--QRLPNELGNLEALKELKAEGIAIR--EV 180
            + +   G+P K   L    +L   G S +    +P        +++L      +   + 
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 181 PSSIVCLKNLGRLSF------ESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHL 234
            + I    NL  L           + L +   QL  LRI            E ++    L
Sbjct: 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370

Query: 235 YWLRISYCERLKSLPELPCDLSDIE----AHCCSSLEALSGLSI 274
             L    C+ L+ +     D+++           +L     + +
Sbjct: 371 IAL-AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 57/303 (18%), Positives = 89/303 (29%), Gaps = 44/303 (14%)

Query: 4   SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLA----------------TN 47
            + M         +  +R  NL+ L L           +                     
Sbjct: 54  HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113

Query: 48  LESLTFRGCTSLLETHSSI--QYLNKLIVLNLEHCRSLTS---LSTSIHLESLKTLILSG 102
           L+S+ FR           +     + L  L L+ C   T+   LS   H   +KTL++  
Sbjct: 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173

Query: 103 CSNLMKLPSSIERLS----SLILLNLRNCS----RLEGLPSKICKLKSLERLNLSGCSN- 153
            S   K    +  L+    SL +LN           + L +     +SL  + +      
Sbjct: 174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233

Query: 154 -LQRLPNELGNLEALKELK-AEGIAIREVPSSIVCLKNLGRLSFE--SFKELPECLGQLS 209
            L        NLE        E I + E   ++V  + L RL        E+P      +
Sbjct: 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA 293

Query: 210 SLRILFLDKNNF--ERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLE 267
            +R L L       E     I    +L  L        + L  L        A  C  L+
Sbjct: 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL--------AQYCKQLK 345

Query: 268 ALS 270
            L 
Sbjct: 346 RLR 348

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 29/139 (20%), Positives = 45/139 (32%), Gaps = 18/139 (12%)

Query: 19  VQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE 78
              L NL    L   +   +I DL L   + SL   GC  L                   
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSL-LIGCKKLRR------------FAFYL 445

Query: 79  HCRSLTSLSTSI---HLESLKTLILSGCSNLMK-LPSSIERLSSLILLNLRNCSRL-EGL 133
               LT L  S    +  +++ ++L       + L        +L  L +R C      +
Sbjct: 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505

Query: 134 PSKICKLKSLERLNLSGCS 152
            + + KL SL  L + G  
Sbjct: 506 AAAVTKLPSLRYLWVQGYR 524

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 50/257 (19%), Positives = 92/257 (35%), Gaps = 37/257 (14%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSL 59
           +   L++ ++ I +L K   + L +L  L L ++  ++KI +           F      
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEK---------AFSP---- 100

Query: 60  LETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSI-ERLSS 118
                    L KL  L +     L  +  ++   SL  L +     + K+P  +   L +
Sbjct: 101 ---------LRKLQKLYISKNH-LVEIPPNL-PSSLVELRIHDN-RIRKVPKGVFSGLRN 148

Query: 119 LILLNL-RNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAI 177
           +  + +  N     G          L  L +S    L  +P +L   E L EL  +   I
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDL--PETLNELHLDHNKI 205

Query: 178 REVPS-SIVCLKNLGRL--SFESFKELPE-CLGQLSSLRILFLDKNNFERIPESIICLSH 233
           + +    ++    L RL       + +    L  L +LR L LD N   R+P  +  L  
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL 265

Query: 234 LYWLRISYCERLKSLPE 250
           L  + +     +  +  
Sbjct: 266 LQVVYLHTN-NITKVGV 281

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 42/254 (16%), Positives = 92/254 (36%), Gaps = 44/254 (17%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--T 57
           +L +L + ++ I ++ +     L  L+ L +S + HL +IP  +L ++L  L        
Sbjct: 79  HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPP-NLPSSLVELRIHDNRIR 136

Query: 58  SLLETHSSIQYLNKLIVLNLEH-CRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIER 115
            + +       L  +  + +       +           L  L +S    L  +P  +  
Sbjct: 137 KVPK--GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDL-- 191

Query: 116 LSSLILLNLRNCSRLEGLPSKI-CKLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAE 173
             +L  L+L + ++++ +  +   +   L RL L     ++ + N  L  L  L+EL   
Sbjct: 192 PETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLREL--- 246

Query: 174 GIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIIC--- 230
                              L       +P  L  L  L++++L  NN  ++  +  C   
Sbjct: 247 ------------------HLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288

Query: 231 ----LSHLYWLRIS 240
                ++   + + 
Sbjct: 289 FGVKRAYYNGISLF 302

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 58/285 (20%), Positives = 93/285 (32%), Gaps = 53/285 (18%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSL 59
               + +  + I  +     +   NL  L L  +  L +I          +  F G    
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARID---------AAAFTG---- 78

Query: 60  LETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSI-ERL 116
                    L  L  L+L     L S+  +    L  L TL L  C  L +L   +   L
Sbjct: 79  ---------LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGL 128

Query: 117 SSLILLNLRNCSRLEGLPSKI-CKLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEG 174
           ++L  L L++   L+ LP      L +L  L L G + +  +P      L +L  L    
Sbjct: 129 AALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQ 186

Query: 175 IAIREVPSSI-VCLKNLGRLSFES--FKELPE-CLGQLSSLRILFLDKNNFERIPESIIC 230
             +  V       L  L  L   +     LP   L  L +L+ L L+ N +        C
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV-------C 239

Query: 231 LSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSIL 275
                 L       L+       ++       CS  + L+G  + 
Sbjct: 240 DCRARPLW----AWLQKFRGSSSEVP------CSLPQRLAGRDLK 274

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 126 NCS--RLEGLPSKICKLKSLERLNLSGCSNLQRLP-NELGNLEALKELKAEGIAIREVPS 182
           +C    L+ +P  I    + +R+ L G + +  +P         L  L      +  + +
Sbjct: 17  SCPQQGLQAVPVGI--PAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 183 SI-VCLKNLGRLSFESFKEL----PECLGQLSSLRILFLDKNNFERIPESIIC-LSHLYW 236
           +    L  L +L      +L    P     L  L  L LD+   + +   +   L+ L +
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 237 LRISYCERLKSLPE 250
           L +     L++LP+
Sbjct: 134 LYLQDN-ALQALPD 146

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 2e-12
 Identities = 78/462 (16%), Positives = 141/462 (30%), Gaps = 117/462 (25%)

Query: 16  WKGVQRLVNLKHLNLSHSEHLTKIPDLS--LATNLESLTFRGCTSLLETHSSIQYLNKLI 73
           W      +NLK+ N S    L  +  L   +  N  S +       L  HS    L +L+
Sbjct: 186 W------LNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 74  VLNLEHCRSLTSL---STSIHLESL----KTLILSGCSNLMKLPSSIERLSSLILLNLRN 126
                +   L  L     +    +     K L+ +    +       + LS+    ++  
Sbjct: 239 KSK-PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV------TDFLSAATTTHISL 291

Query: 127 CSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE--LGNLEALKELKAEGIAIREVPSSI 184
                 L     ++KSL    L  C   Q LP E    N   L  +      IR+  ++ 
Sbjct: 292 DHHSMTLTPD--EVKSLLLKYL-DCR-PQDLPREVLTTNPRRLSIIAES---IRDGLATW 344

Query: 185 VCLKNLGRLSFESFKELPE-CLGQLSS--LRILFLDKNNFE---RIPESIICLSHLYWLR 238
               N   ++ +    + E  L  L     R +F   + F     IP  ++ L    W  
Sbjct: 345 ---DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL---IWFD 398

Query: 239 ISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGMI 298
           +   + +  + +L    S +E     S  ++  + +       N       H    R ++
Sbjct: 399 VIKSDVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELKVKLENEYAL---H----RSIV 450

Query: 299 -------CFPGSELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGGGS 351
                   F   +L                  LD + Y+ +G           HH     
Sbjct: 451 DHYNIPKTFDSDDLI--------------PPYLDQYFYSHIG-----------HH----- 480

Query: 352 FHVCCESILKT-----EDGLFQV--TDGRMTGWFDGSPGPRYIGSDHVFLGFDFNMFSDG 404
                   LK         LF++   D R   + +     R+  +     G   N     
Sbjct: 481 --------LKNIEHPERMTLFRMVFLDFR---FLEQK--IRHDSTAWNASGSILNTLQQ- 526

Query: 405 LDEY--Y-CSDEVFIQFYLEDRRCVDFCEVTKCGIHLLYARD 443
           L  Y  Y C ++   +  +     +DF  + K   +L+ ++ 
Sbjct: 527 LKFYKPYICDNDPKYERLVNA--ILDF--LPKIEENLICSKY 564

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 38/297 (12%), Positives = 85/297 (28%), Gaps = 107/297 (36%)

Query: 64  SSIQYLNKLIVLNLEH-------CRSLTSLSTSIHLESLKTLILSG-CSNLMKLPSSIER 115
              QY  K I+   E        C+ +         +  K+++      +++    ++  
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCKDV--------QDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 116 LSSLILLNLRNCSR-----LEG--------LPSKI---CKLKSLERLNLSGCSNLQRLPN 159
              L    L          +E         L S I    +  S+         +  RL N
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYN 121

Query: 160 ELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLD-- 217
           +            +  A   V           RL  + + +L + L +L   + + +D  
Sbjct: 122 D-----------NQVFAKYNVS----------RL--QPYLKLRQALLELRPAKNVLIDGV 158

Query: 218 ----K--------NNFE---RIPESIICLSHLYWLRISYCERLKSLPEL----------- 251
               K         +++   ++   I      +WL +  C   +++ E+           
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKI------FWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 252 PCDLSDIEAHCCSSLEALSG-LSILFTQTS-----------WNSQC---FDFQHCEV 293
               SD  ++    + ++   L  L                 N++    F+   C++
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKI 268

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 50/272 (18%), Positives = 86/272 (31%), Gaps = 36/272 (13%)

Query: 19  VQRLVNLKHLNLSHSEHLTKIPDLSL-ATNLESLTFRGCTSLLETHSSIQYLNKLIVLNL 77
           V R  NLK L L+ +  L K+  L   A  LE L   G T+ +            + + L
Sbjct: 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY-----SGLSVAL 261

Query: 78  EHCRSLTSLSTSI------------HLESLKTLILSGCSNLMK-LPSSIERLSSLILLNL 124
             C+ L  LS                   L TL LS  +     L   + +   L  L +
Sbjct: 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321

Query: 125 RNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSI 184
            +     GL       K L  L +         PN     + L  +      +  V    
Sbjct: 322 LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV---- 377

Query: 185 VCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESI--ICLSHLYWLRISYC 242
             L    +++  +   +      ++  R+  ++    + +      I    +    + +C
Sbjct: 378 --LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI----VEHC 431

Query: 243 ERLKSLPELPCDLSDIE----AHCCSSLEALS 270
           + L+ L  L   L+D            +E LS
Sbjct: 432 KDLRRL-SLSGLLTDKVFEYIGTYAKKMEMLS 462

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 49/288 (17%), Positives = 81/288 (28%), Gaps = 44/288 (15%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLA------TNLESLTFR 54
           NLV           +         L+ + L        + D  L        N + L   
Sbjct: 83  NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM----VVTDDCLELIAKSFKNFKVLVLS 138

Query: 55  GCTSLLETHSSIQYL----NKLIVLNLEHCR----SLTSLST-SIHLESLKTLILSGCSN 105
            C     +   +  +      L  L+L        S   LS       SL +L +S  ++
Sbjct: 139 SCEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS 196

Query: 106 LMK---LPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELG 162
            +    L   + R  +L  L L     LE L + + +   LE L   G +   R     G
Sbjct: 197 EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG 256

Query: 163 NLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE 222
              AL   K            + CL             +     +L++L + +    +  
Sbjct: 257 LSVALSGCK-----------ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS-Y 304

Query: 223 RIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALS 270
            + + +     L  L +        L  L        A  C  L  L 
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYIEDAGLEVL--------ASTCKDLRELR 344

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 43/254 (16%), Positives = 79/254 (31%), Gaps = 37/254 (14%)

Query: 26  KHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSL----LETHSSIQYLNKLIVLNLEHCR 81
           + + + +   ++    +     + S+  +G        L       Y+   I        
Sbjct: 46  RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105

Query: 82  SLTSLSTS-------------IHLESLKTLILSGCSNL--MKLPSSIERLSSLILLNLRN 126
            L  +                   ++ K L+LS C       L +      +L  L+LR 
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165

Query: 127 CS----RLEGLPSKICKLKSLERLNLSGCSN------LQRLPNELGNLEALKELKAEGI- 175
                     L        SL  LN+S  ++      L+RL     NL++LK  +A  + 
Sbjct: 166 SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225

Query: 176 AIREVPSSIVCLKNLGRLSF------ESFKELPECLGQLSSLRILFLDKNNFERIPESII 229
            +  +      L+ LG   +      + +  L   L     LR L    +       ++ 
Sbjct: 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY 285

Query: 230 -CLSHLYWLRISYC 242
              S L  L +SY 
Sbjct: 286 SVCSRLTTLNLSYA 299

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 29/251 (11%), Positives = 75/251 (29%), Gaps = 31/251 (12%)

Query: 19  VQRLVNLKHLNLSHSEHLTKIPDL-SLATNLESLTFRGCTSLLE------THSSIQYLNK 71
           + +   L+ L +        +  L S   +L  L        +       T   +  ++ 
Sbjct: 310 LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369

Query: 72  ---LIVLNLEHCRSLTSLST---SIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLR 125
               +   L  CR +T+ +    + +  ++    L           ++E L       + 
Sbjct: 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE 429

Query: 126 NCSRLE-----------GLPSKICKLKSLERLNLSGCSNLQR-LPNELGNLEALKELKAE 173
           +C  L                     K +E L+++   +    + + L   ++L++L+  
Sbjct: 430 HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489

Query: 174 GIAI--REVPSSIVCLKNLGRLSFESFKELPECLGQLSS----LRILFLDKNNFERIPES 227
                 + + ++   L+ +  L   S          L      L +  +D+         
Sbjct: 490 DCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPE 549

Query: 228 IICLSHLYWLR 238
              +  ++  R
Sbjct: 550 SCPVERVFIYR 560

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 34/246 (13%), Positives = 76/246 (30%), Gaps = 51/246 (20%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSL 59
           +  +L++  + ++ +       L N+  + +S    L ++          S +F      
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE---------SHSFYN---- 78

Query: 60  LETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLP--SSIER 115
                    L+K+  + + + R+LT +       L  LK L +     L   P  + +  
Sbjct: 79  ---------LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYS 128

Query: 116 LSSLILLNLRNCSRLEGLPSKICK--LKSLERLNLSGCSNLQRLPNELGNLEALKELKAE 173
                +L + +   +  +P    +        L L        +     N   L  +   
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAV--- 184

Query: 174 GIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSH 233
                     +   K L  +  ++F  +       S   +L + + +   +P     L H
Sbjct: 185 ---------YLNKNKYLTVIDKDAFGGVY------SGPSLLDVSQTSVTALPSKG--LEH 227

Query: 234 LYWLRI 239
           L  L  
Sbjct: 228 LKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 29/185 (15%), Positives = 62/185 (33%), Gaps = 26/185 (14%)

Query: 72  LIVLNLEHCRSLTSLSTS--IHLESLKTLILSGCSNLMKLPSSI-ERLSSLILLNLRNCS 128
              L L     L ++ +    +L ++  + +S    L +L S     LS +  + +RN  
Sbjct: 33  TQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 129 RLEGLPSKICK-LKSLERLNLSGCSNLQRLPNE--LGNLEALKELKAEGIAIREVPSSIV 185
            L  +     K L  L+ L +     L+  P+   + + +    L             I 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFIL------------EIT 138

Query: 186 CLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERL 245
               +  +   +F+ L       +    L L  N F  +       + L  + ++  + L
Sbjct: 139 DNPYMTSIPVNAFQGLC------NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYL 192

Query: 246 KSLPE 250
             + +
Sbjct: 193 TVIDK 197

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 36/182 (19%), Positives = 70/182 (38%), Gaps = 12/182 (6%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTK--IPDLSLATNLESLTFRGCTS 58
            +++   P S + Q          ++H++LS+S          LS  + L++L+  G   
Sbjct: 71  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 130

Query: 59  LLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI---HLESLKTLILSGCSNL--MKLPSSI 113
                +++   + L+ LNL  C   +  +          L  L LS C +     +  ++
Sbjct: 131 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190

Query: 114 ERLS-SLILLNLRNCSRL---EGLPSKICKLKSLERLNLSGCSNL-QRLPNELGNLEALK 168
             +S ++  LNL    +      L + + +  +L  L+LS    L      E   L  L+
Sbjct: 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250

Query: 169 EL 170
            L
Sbjct: 251 HL 252

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 41/245 (16%), Positives = 84/245 (34%), Gaps = 21/245 (8%)

Query: 21  RLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCT--SLLETHSSIQYLNKLIVLNLE 78
             + L ++  +      +I  L   T +   +         L+          L  L++ 
Sbjct: 223 SNLTLNNIETT-WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 79  HC--RSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLP 134
                      + I     ++     +     M       ++S  + L+  N   L    
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN-LLTDTV 340

Query: 135 SKIC-KLKSLERLNLSGCSNLQRLPNELG---NLEALKELKAEGIAIREVPSSIVC--LK 188
            + C  L  LE L L   + L+ L         +++L++L     ++        C   K
Sbjct: 341 FENCGHLTELETLILQM-NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399

Query: 189 NLG--RLSFESFKELP-ECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERL 245
           +L    +S     +    CL     +++L L  N  + IP+ ++ L  L  L ++   +L
Sbjct: 400 SLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QL 456

Query: 246 KSLPE 250
           KS+P+
Sbjct: 457 KSVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 47/323 (14%), Positives = 89/323 (27%), Gaps = 72/323 (22%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSH-------SEHLTKIPDLSLATN-LESL 51
            L  L + H+ I+ L   V +    L++L+LSH             +  L L+ N  ++L
Sbjct: 46  KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDAL 105

Query: 52  ----TFRGCTSL---------------------------------LETHSSIQYLNKLIV 74
                F   + L                                        + L     
Sbjct: 106 PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165

Query: 75  LNLEHCRSLTSLSTSI------------HLESLKTLILSGCSNLMKLPSSIERLSSLILL 122
            +L            I                   L  + CS  + + + ++    L  L
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225

Query: 123 NLRNCSRLEGLPSKICKL---KSLERLNLSGCSNLQRLPNELGNL--EALKELKAEGIAI 177
            L N         +I +L    ++   ++S      +L     +    +LK L    +  
Sbjct: 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285

Query: 178 RE--VPSSIVCLK----NLGRLSFESFKELPE-CLGQLSSLRILFLDKNNFERIPESIIC 230
                P S +       N+   +    + +   C  ++S    L    N           
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345

Query: 231 -LSHLYWLRISYCERLKSLPELP 252
            L+ L  L +    +LK L ++ 
Sbjct: 346 HLTELETLILQMN-QLKELSKIA 367

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 29/154 (18%), Positives = 60/154 (38%), Gaps = 29/154 (18%)

Query: 1   NLVSLEMPHSSIKQLWKGV---QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCT 57
            L +L +  + +K+L K      ++ +L+ L++S +  ++        +  +SL      
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLL----- 402

Query: 58  SLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLS 117
                            LN+     LT          +K L L     +  +P  + +L 
Sbjct: 403 ----------------SLNMSSNI-LTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLE 444

Query: 118 SLILLNLRNCSRLEGLPSKICK-LKSLERLNLSG 150
           +L  LN+ +  +L+ +P  I   L SL+++ L  
Sbjct: 445 ALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 50/298 (16%), Positives = 92/298 (30%), Gaps = 42/298 (14%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSL 59
               L +  + I +LW      L  L+ L +SH+  +  +                    
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDI------------------ 62

Query: 60  LETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCS-NLMKLPSSIERLSS 118
               S  ++  +L  L+L H + L  +S      +LK L LS  + + + +      +S 
Sbjct: 63  ----SVFKFNQELEYLDLSHNK-LVKIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116

Query: 119 LILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR 178
           L  L L      +     I  L   + L + G         +   L+         +   
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG--ETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 179 EVPSSIV---CLKNLGRLSFESFKELPECLGQLSSLRILF----------LDKNNFERIP 225
                 +    +K +  L   + K + E       L IL           L  NN E   
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 226 ESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNS 283
            S I +  L W    +   + ++            +  +SL+ALS   ++     +  
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 54/227 (23%), Positives = 85/227 (37%), Gaps = 36/227 (15%)

Query: 20  QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRG--CTSLLETHSSIQYLNKLIVLNL 77
            ++ +   +N     +LT +P   L  +   L        +   + +++    +L  LNL
Sbjct: 7   SKVASHLEVNC-DKRNLTALPP-DLPKDTTILHLSENLLYTF--SLATLMPYTRLTQLNL 62

Query: 78  EHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKI 137
           +    LT L     L  L TL LS    L  LP   + L +L +L++    RL  LP   
Sbjct: 63  DRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN-RLTSLPLGA 119

Query: 138 -CKLKSLERLNLSGCSN-LQRLPNEL-GNLEALKELKAEGIAIREVPSSIVCLKNLGRLS 194
              L  L+ L L G  N L+ LP  L      L++L                      L+
Sbjct: 120 LRGLGELQELYLKG--NELKTLPPGLLTPTPKLEKL---------------------SLA 156

Query: 195 FESFKELPE-CLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRIS 240
             +  ELP   L  L +L  L L +N+   IP+       L +  + 
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 11/131 (8%)

Query: 126 NCS--RLEGLPSKICKLKSLERLNLSGCSNLQRLP-NELGNLEALKELKAEGIAIREVP- 181
           NC    L  LP  +   K    L+LS  + L       L     L +L  +   + ++  
Sbjct: 16  NCDKRNLTALPPDL--PKDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 182 -SSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIIC-LSHLYWLRI 239
             ++  L  L  LS    + LP     L +L +L +  N    +P   +  L  L  L +
Sbjct: 73  DGTLPVLGTL-DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 240 SYCERLKSLPE 250
                LK+LP 
Sbjct: 132 KGN-ELKTLPP 141

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 49/289 (16%), Positives = 97/289 (33%), Gaps = 42/289 (14%)

Query: 1   NLVSLEMPHSSIKQ-LWKGV-QRLVNLKHLNLSHSEHLTKIPDLSLA--TNLESLTFRGC 56
           +L  L++   +    +     + L +L  L L ++    ++   +     NLE LT   C
Sbjct: 55  DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQC 113

Query: 57  --TSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI---HLESLKTLILSG------CS- 104
                + + +  + L  L +L L     +  +  +    ++     L L+       C  
Sbjct: 114 NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172

Query: 105 ---NLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL 161
              N      ++ RLSS+ L ++              K  S+  L+LSG    + +    
Sbjct: 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232

Query: 162 GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPEC----------------- 204
            +  A  ++++  ++      S     N       +FK L                    
Sbjct: 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292

Query: 205 --LGQLSSLRILFLDKNNFERIPESI-ICLSHLYWLRISYCERLKSLPE 250
                 + L  L L +N   +I ++    L+HL  L +S    L S+  
Sbjct: 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDS 340

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.1 bits (138), Expect = 5e-09
 Identities = 47/293 (16%), Positives = 101/293 (34%), Gaps = 50/293 (17%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSE-----------HLTKIPDLSLATN- 47
           ++  +++  +SI +L +    RL +L+ L +                L+ +  L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 48  ---LESLTFRGCTSLLE-------------THSSIQYLNKLIVLNLEHCRSLTSLSTSI- 90
              LE+  F G  +L               + +  + L  L +L L     +  +  +  
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASF 149

Query: 91  --HLESLKTLILSG------CS----NLMKLPSSIERLSSLILLNLRNCSRLEGLPSKIC 138
             ++     L L+       C     N      ++ RLSS+ L ++              
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 139 KLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESF 198
           K  S+  L+LSG    + +     +  A  ++++  ++      S     N       +F
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 199 KELPECLGQLSSLRILFLDKNNFERIPESI-ICLSHLYWLRISYCERLKSLPE 250
           K L       S ++   L K+    + +S+    + L  L ++    +  + +
Sbjct: 270 KGLEA-----SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDD 316

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 53/315 (16%), Positives = 106/315 (33%), Gaps = 71/315 (22%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHS------------EHLTKIPDLSLATN 47
           +L+ L++ ++   QL  G    L NL+ L L+              + LT +  L L  N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 48  -LESLTFRGCTSLLETHSSIQYLN--------------------KLIVLNLEHCRSLTSL 86
            ++ +        +        L+                       +L L    +L  +
Sbjct: 140 NIKKIQPASFFLNM---RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL-SSITLQDM 195

Query: 87  STS----------IHLESLKTLILSGCSNLMKLPS------SIERLSSLILLNLRN---- 126
           +                S+ TL LSG      +        +  ++ SLIL N  N    
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 127 --CSRLEGLPSKIC---KLKSLERLNLSGCSNLQRLPNEL-GNLEALKELKAEGIAIREV 180
              +  +   +      +   ++  +LS  S +  L   +  +   L++L      I ++
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQNEINKI 314

Query: 181 PSSI-VCLKNLGRLSFES--FKELPECL-GQLSSLRILFLDKNNFERIPESIIC-LSHLY 235
             +    L +L +L+        +   +   L  L +L L  N+   + +     L +L 
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374

Query: 236 WLRISYCERLKSLPE 250
            L +    +LKS+P+
Sbjct: 375 ELALDTN-QLKSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 34/214 (15%), Positives = 70/214 (32%), Gaps = 13/214 (6%)

Query: 24  NLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE---THSSIQYLNKLIVLNLEHC 80
           +   L L  S  L  + +  L    +       TS+     + +  +        +    
Sbjct: 181 HFTLLRL-SSITLQDMNEYWL-GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238

Query: 81  RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICK- 139
             + SL  S       +   +   +           S +   +L   S++  L   +   
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK-SKIFALLKSVFSH 297

Query: 140 LKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEGIAIREVPSSI-VCLKNLGRLSFES 197
              LE+L L+  + + ++ +     L  L +L      +  + S +   L  L  L    
Sbjct: 298 FTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356

Query: 198 --FKELPECL-GQLSSLRILFLDKNNFERIPESI 228
              + L +     L +L+ L LD N  + +P+ I
Sbjct: 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 51/245 (20%), Positives = 87/245 (35%), Gaps = 29/245 (11%)

Query: 21  RLVNLKHLNLSH----SEHLTKIPDLSLATNLESLTFRGCTSLLETHSSI--QYLNKLIV 74
           + ++LK L +      S  L     +   + L+ LT             +       L +
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 75  LNLEHCRSLTSLSTSIHL-----ESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSR 129
           LNL +    T  +    L       LK L ++   +L      +    +L  L+L +   
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 130 L--EGLPSKIC--KLKSLERLNLSGCSNLQRLPNE----LGNLEALKELKAEGIAIREVP 181
           L   GL S +C  K  +L+ L L     ++               L+ L     ++R+  
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 182 SSIVC-----LKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYW 236
            +  C     L +L  LSF   K++P+ L     L +L L  N  +R P S   L  +  
Sbjct: 245 GAPSCDWPSQLNSL-NLSFTGLKQVPKGLPA--KLSVLDLSYNRLDRNP-SPDELPQVGN 300

Query: 237 LRISY 241
           L +  
Sbjct: 301 LSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 7e-08
 Identities = 40/247 (16%), Positives = 72/247 (29%), Gaps = 40/247 (16%)

Query: 24  NLKHLNLSHSEHLT--KIPDLSLATNLESLTFRGCT---SLLETHSSIQYLNKLIVLNLE 78
           +L++L           +  D+  + +L+ LT R       +L     +  ++ L  L LE
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 79  HCRSLTSLSTSI---HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCS----RLE 131
           +     +    +       L  L L   S      + +  L   +   L+  S       
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 132 GLPSK-ICKLKSLERLNLSGCSNLQRLPNE----LGNLEALKELKAEGIAIREVPSSIVC 186
               + +    +L  L+LS    L                L+ L                
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL---------------- 206

Query: 187 LKNLGRLSFESF-KELPECLGQLSSLRILFLDKNNFERIPESIIC--LSHLYWLRISYCE 243
              L     E+              L+ L L  N+      +  C   S L  L +S+  
Sbjct: 207 --ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT- 263

Query: 244 RLKSLPE 250
            LK +P+
Sbjct: 264 GLKQVPK 270

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 17/170 (10%)

Query: 88  TSIHLESLKTLILS-GCSNLMKLPSSIERLSSLILLNLRNC--SRLEGLPSKICKLKSLE 144
            S+     + + L      + K+ +++  L +   L L      ++  L      +++L 
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL----SGMENLR 73

Query: 145 RLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSF-----ESFK 199
            L+L     ++++ N     + L+EL      I  + S I  L NL  L        ++ 
Sbjct: 74  ILSLGRN-LIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWG 131

Query: 200 ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR-ISYCERLKSL 248
           E+ + L  L  L  L L  N      +     S  Y +  +     LK L
Sbjct: 132 EI-DKLAALDKLEDLLLAGNPLYNDYKENNATSE-YRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 38/180 (21%), Positives = 68/180 (37%), Gaps = 39/180 (21%)

Query: 2   LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE 61
            V L      I+++   +  L   KHL LS +  + KI      ++L  +          
Sbjct: 27  KVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKI------SSLSGME--------- 70

Query: 62  THSSIQYLNKLIVLNLEHCRSLTSLSTSIHL-ESLKTLILSGCSNLMKLPSSIERLSSLI 120
                     L +L+L     +  +     + ++L+ L +S   N +   S IE+L +L 
Sbjct: 71  ---------NLRILSLGRNL-IKKIENLDAVADTLEELWISY--NQIASLSGIEKLVNLR 118

Query: 121 LLNLRNC--SRLEGLPSKICKLKSLERLNLSG--CSNLQRLPNELGN-----LEALKELK 171
           +L + N   +    +  K+  L  LE L L+G    N  +  N         ++ L  LK
Sbjct: 119 VLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 52/227 (22%), Positives = 85/227 (37%), Gaps = 27/227 (11%)

Query: 32  HSEHLTKIPDLSLATNLESLTFRG--CTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTS 89
              +  KIPD +L  + ++L         L     S     +L VL+L  C  + ++   
Sbjct: 15  MELNFYKIPD-NLPFSTKNLDLSFNPLRHL--GSYSFFSFPELQVLDLSRCE-IQTIEDG 70

Query: 90  I--HLESLKTLILSGCSN-LMKLPSSI-ERLSSLILLNLRNCSRLEGLPSKI-CKLKSLE 144
               L  L TLIL+G  N +  L       LSSL  L       L  L +     LK+L+
Sbjct: 71  AYQSLSHLSTLILTG--NPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLK 127

Query: 145 RLNLSGCSN-LQRLPNE--LGNLEALKELKAEGIAIREVPSSI-VCLKNLGRLSFE---- 196
            LN++   N +Q         NL  L+ L      I+ +  +    L  +  L+      
Sbjct: 128 ELNVA--HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 197 --SFKELPECLGQLSSLRILFLDKNNFERIPESIIC-LSHLYWLRIS 240
                 +     +   L+ L LD N  + +P+ I   L+ L  + + 
Sbjct: 186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 42/177 (23%), Positives = 66/177 (37%), Gaps = 31/177 (17%)

Query: 83  LTSLSTSI--HLESLKTLILSGCSNLMKLPSSI-ERLSSLILLNLRNCSRLEGLPSKI-C 138
           L  L +        L+ L LS C  +  +     + LS L  L L   + ++ L      
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFS 97

Query: 139 KLKSLERLNLSGCSNLQRLPNEL-GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFES 197
            L SL++L      NL  L N   G+L+ LKEL                  N+     +S
Sbjct: 98  GLSSLQKLVAVET-NLASLENFPIGHLKTLKEL------------------NVAHNLIQS 138

Query: 198 FKELPECLGQLSSLRILFLDKNNFERIPESIIC-LSHLYWLRIS---YCERLKSLPE 250
           F +LPE    L++L  L L  N  + I  + +  L  +  L +S       +  +  
Sbjct: 139 F-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 2e-08
 Identities = 42/278 (15%), Positives = 73/278 (26%), Gaps = 32/278 (11%)

Query: 3   VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLET 62
           V    P +   ++   +  +          +      P      +L + +          
Sbjct: 259 VCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTF 318

Query: 63  HSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILL 122
                  +      L   R       S   E L    LS       L S +E    L  L
Sbjct: 319 RVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELS-VEKSTVLQSELESCKELQEL 377

Query: 123 NLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPS 182
              N   L  +   I  +++L+ L              L     LK +     A  +   
Sbjct: 378 EPENKWCLLTI---ILLMRALDPLLY--------EKETLQYFSTLKAVDPMRAAYLDDLR 426

Query: 183 SIVCLKNLGRLSFESFKEL----------PECLGQLSSLRILFLDKNNFERIPESIICLS 232
           S   L+N       +   +             L QL  +  L L  N    +P ++  L 
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALR 486

Query: 233 HLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALS 270
            L  L+ S    L+++  +              L+ L 
Sbjct: 487 CLEVLQASDN-ALENVDGV---------ANLPRLQELL 514

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 3e-07
 Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 18/180 (10%)

Query: 1   NLVSLEMPHSSIKQLWK---GVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCT 57
            L+++ +   ++  L      +Q    LK ++   + +L  +    L  N          
Sbjct: 384 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV 443

Query: 58  SLLETHS-------SIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKL 109
            +L            ++ L  +  L+L H R L +L  ++  L  L+ L  S   N ++ 
Sbjct: 444 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASD--NALEN 500

Query: 110 PSSIERLSSLILLNLRNCSRLEGLPS--KICKLKSLERLNLSGCSNLQRLPNELGNLEAL 167
              +  L  L  L L N  RL+   +   +     L  LNL G ++L +       L  +
Sbjct: 501 VDGVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEM 558

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 44/272 (16%), Positives = 89/272 (32%), Gaps = 30/272 (11%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSH----SEHLTKIPDLSLATNLESLTFRGC 56
           N+   +     +      + R   L ++ L H     +   K+        +E L     
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 57  T--SLLETHSSIQYLNKLIVLNLEHCRS--LTSLSTSI--HLESLKTLILSGCSNLMKLP 110
           T    ++          L  L +EH ++        ++      +   +LS         
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 111 SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKEL 170
                 SS   LN       + +      LK L+ L L   + L+         + +  L
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR-NGLKNFFKVALMTKNMSSL 405

Query: 171 KAEGIAIREVPSSIV-----CLKNLGRLSFES-------FKELPECLGQLSSLRILFLDK 218
           +   +++  + S          +++  L+  S       F+ LP        +++L L  
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP------PKVKVLDLHN 459

Query: 219 NNFERIPESIICLSHLYWLRISYCERLKSLPE 250
           N    IP+ +  L  L  L ++   +LKS+P+
Sbjct: 460 NRIMSIPKDVTHLQALQELNVAS-NQLKSVPD 490

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 55/326 (16%), Positives = 108/326 (33%), Gaps = 47/326 (14%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSH-------SEHLTKIPDLSLATN-LESL 51
            L  L + H+ I+ L   V     +L++L++SH          +  +  L L+ N  + L
Sbjct: 77  ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVL 136

Query: 52  T----FRGCTSLLE---THSSIQYLNKLIVLNLEHCRSLTSLST---------SIHLESL 95
                F   T L     + +  + L+ L V +L     L  L +         S+ + + 
Sbjct: 137 PVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196

Query: 96  KTLILSGCSNLMKLPSSIERLSSLILLNLRN-------CSRLEGLPSKICKLKSLERLNL 148
             L L    N +        +++L  L L N       C RL    S++ +  +L  + L
Sbjct: 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256

Query: 149 SGCSNLQRLPNELGNL---EALKELKAEGIAIREVPSSIVC------LKNLG--RLSFES 197
                  +   +L        ++ L    + I E             LK+L    +  + 
Sbjct: 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316

Query: 198 FKELPECLG-QLSSLRILFLDKNNFERIPESII-CLSHLYWLRISYCERLKSLPELPCDL 255
           F    E L    + + I  L  ++   I        S   +L  +      S+ +    L
Sbjct: 317 FLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376

Query: 256 SDIEAHCCSS--LEALSGLSILFTQT 279
             ++        L+    ++++    
Sbjct: 377 KRLQTLILQRNGLKNFFKVALMTKNM 402

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 33/178 (18%)

Query: 81  RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSI--ERLSSLILLNLRNCSRLEGLPSKI- 137
           + L ++  S+       L LS   NL +L +     RL++L  L L +   L  + S+  
Sbjct: 28  QQLPNVPQSLP-SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAF 84

Query: 138 CKLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFE 196
             + +L  L+LS   +L  L      +L+AL+ L      I  V                
Sbjct: 85  VPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-------------N 130

Query: 197 SFKELPECLGQLSSLRILFLDKNNFERIPESIIC----LSHLYWLRISYCERLKSLPE 250
           +F+++         L+ L+L +N   R P  +I     L  L  L +S   +LK LP 
Sbjct: 131 AFEDMA-------QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPL 180

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 38/186 (20%)

Query: 1   NLVSLEMPHSSIKQLWKGV--QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTS 58
               L++ H+++ +L       RL NL  L LSH+ HL  I          S  F    +
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFIS---------SEAFVPVPN 89

Query: 59  LLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSI-ER 115
           L               L+L     L +L   +   L++L+ L+L    +++ +  +  E 
Sbjct: 90  LRY-------------LDLSSNH-LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFED 134

Query: 116 LSSLILLNLRNCSRLEGLP----SKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELK 171
           ++ L  L L    ++   P        KL  L  L+LS  + L++LP    +L+ L    
Sbjct: 135 MAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPL--TDLQKLPAWV 190

Query: 172 AEGIAI 177
             G+ +
Sbjct: 191 KNGLYL 196

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 32/162 (19%), Positives = 48/162 (29%), Gaps = 35/162 (21%)

Query: 91  HLESLKTLILSGC-SNLMKLPSSIERLSSLILLNLRNC--SRLEGLPSKICKLKSLERLN 147
               +K L+L    SN  KL    +    L  L+  N   + +  LP    KL  L++L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLE 70

Query: 148 LSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQ 207
           LS       L         L  L                  NL     +    + E L +
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHL------------------NLSGNKIKDLSTI-EPLKK 111

Query: 208 LSSLRILFLDKNNFERIPESIICLSHLYWLR-ISYCERLKSL 248
           L +L+ L L       + +        Y         +L  L
Sbjct: 112 LENLKSLDLFNCEVTNLND--------YRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 4   SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TSLLE 61
            L+   S+  +L         L+ L+  +   LT I +L     L+ L       +  LE
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLE 81

Query: 62  THSSIQYLNKLIVLNLEHCR--SLTSLSTSIHLESLKTLILSGC 103
             +  +    L  LNL   +   L+++     LE+LK+L L  C
Sbjct: 82  VLA--EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 4/101 (3%)

Query: 71  KLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRL 130
           K +VL+            +   E L+ L       L  + +++ +L+ L  L L +    
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVS 77

Query: 131 EGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELK 171
            GL     K  +L  LNLSG  N  +  + +  L+ L+ LK
Sbjct: 78  GGLEVLAEKCPNLTHLNLSG--NKIKDLSTIEPLKKLENLK 116

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 58/214 (27%), Positives = 88/214 (41%), Gaps = 54/214 (25%)

Query: 32  HSEHLTKIPD--------LSLATN----LESLTFRGCTSLLETHSSIQYLNKLIVLNLEH 79
            S+ LT IP         L L +N    L S  F               L KL +L L  
Sbjct: 24  SSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHR-------------LTKLRLLYLND 70

Query: 80  CRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSI-ERLSSLILLNLRNCSRLEGLPSK 136
            + L +L   I   L++L+TL ++    L  LP  + ++L +L  L L   ++L+ LP +
Sbjct: 71  NK-LQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDR-NQLKSLPPR 127

Query: 137 IC-KLKSLERLNLSGCSNLQRLPNEL-GNLEALKELKAEGIAIREVPSSIVCLKNLGRLS 194
           +   L  L  L+L     LQ LP  +   L +LKEL+     ++ VP             
Sbjct: 128 VFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA---------- 176

Query: 195 FESFKELPECLGQLSSLRILFLDKNNFERIPESI 228
           F+           L+ L+ L LD N  +R+PE  
Sbjct: 177 FDK----------LTELKTLKLDNNQLKRVPEGA 200

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 17/180 (9%)

Query: 81  RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSI-ERLSSLILLNLRNCSRLEGLPSKIC- 138
           + LT++ ++I     K L L   + L  LPS    RL+ L LL L + ++L+ LP+ I  
Sbjct: 26  KKLTAIPSNI-PADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFK 82

Query: 139 KLKSLERLNLSGCSNLQRLPNEL-GNLEALKELKAEGIAIREVPSSI-VCLKNLGRLSFE 196
           +LK+LE L ++    LQ LP  +   L  L EL+ +   ++ +P  +   L  L  LS  
Sbjct: 83  ELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141

Query: 197 S--FKELPECLG---QLSSLRILFLDKNNFERIPESII-CLSHLYWLRISYCERLKSLPE 250
               + LP+  G   +L+SL+ L L  N  +R+PE     L+ L  L++    +LK +PE
Sbjct: 142 YNELQSLPK--GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN-NQLKRVPE 198

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 23/154 (14%)

Query: 104 SNLMKLPSSIERLSSLILLNLRNC--SRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL 161
           + L++  +          L+LR      +E L +    L   + ++ S    +++L    
Sbjct: 6   AELIEQAAQYTNAVRDRELDLRGYKIPVIENLGAT---LDQFDAIDFSDN-EIRKLDG-F 60

Query: 162 GNLEALKELKAEGIAIREVPSSIV-CLKNLGRLS-----FESFKELPECLGQLSSLRILF 215
             L  LK L      I  +   +   L +L  L           +L + L  L SL  L 
Sbjct: 61  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLC 119

Query: 216 LDKNNFERIPESIICLSHLYWLR-ISYCERLKSL 248
           + +N               Y L  I    +++ L
Sbjct: 120 ILRNPVTNKKH--------YRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 16/131 (12%)

Query: 28  LNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLN----KLIVLNLEHCRSL 83
           + L+  E + +    + A     L  RG          I+ L     +   ++      +
Sbjct: 2   VKLTA-ELIEQAAQYTNAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDN-EI 54

Query: 84  TSLSTSIHLESLKTLILSGCSNLMKLPSSI-ERLSSLILLNLRNC--SRLEGLPSKICKL 140
             L     L  LKTL+++  + + ++   + + L  L  L L N     L  L   +  L
Sbjct: 55  RKLDGFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASL 112

Query: 141 KSLERLNLSGC 151
           KSL  L +   
Sbjct: 113 KSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 7/107 (6%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRG--CTS 58
               L++    I  +      L     ++ S +E + K+    L   L++L         
Sbjct: 20  RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRICR 78

Query: 59  LLETHSSIQYLNKLIVLNLEHCR--SLTSLSTSIHLESLKTLILSGC 103
           + E     Q L  L  L L +     L  L     L+SL  L +   
Sbjct: 79  IGE--GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 34/161 (21%), Positives = 50/161 (31%), Gaps = 35/161 (21%)

Query: 92  LESLKTLILSGC-SNLMKLPSSIERLSSLILLNLRNC--SRLEGLPSKICKLKSLERLNL 148
             +++ L+L  C SN  K+        +L  L+L N     +  LP    KL  L++L L
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLEL 78

Query: 149 SGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQL 208
           S       L      L  L  L                  NL     +    L E L +L
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHL------------------NLSGNKLKDISTL-EPLKKL 119

Query: 209 SSLRILFLDKNNFERIPESIICLSHLYWLR-ISYCERLKSL 248
             L+ L L       + +        Y         +L  L
Sbjct: 120 ECLKSLDLFNCEVTNLND--------YRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 73  IVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEG 132
           +VL+            +    +L+ L L     L+ + S++ +L  L  L L       G
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGG 86

Query: 133 LPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELK 171
           L     KL +L  LNLSG  N  +  + L  L+ L+ LK
Sbjct: 87  LDMLAEKLPNLTHLNLSG--NKLKDISTLEPLKKLECLK 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 5   LEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGC--TSLLET 62
           L+   S+  ++       VNL+ L+L +   L  + +L     L+ L          L+ 
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDM 89

Query: 63  HSSIQYLNKLIVLNLEHCR--SLTSLSTSIHLESLKTLILSGC 103
            +  + L  L  LNL   +   +++L     LE LK+L L  C
Sbjct: 90  LA--EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 17/128 (13%), Positives = 44/128 (34%), Gaps = 22/128 (17%)

Query: 47  NLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNL 106
            ++++       +      ++ L  +  + L  C  +           L+ L     S L
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-------GCLERL-----SQL 109

Query: 107 MKLPSSIERLSSLILLNLRNCSRL--EGLPSKICKLKSLERLNLSGCSNLQRLPN-ELGN 163
             L  S+        + + +C  +  +G+ + +   ++L+ L LS    ++         
Sbjct: 110 ENLQKSMLE------MEIISCGNVTDKGIIA-LHHFRNLKYLFLSDLPGVKEKEKIVQAF 162

Query: 164 LEALKELK 171
             +L  L+
Sbjct: 163 KTSLPSLE 170

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 14/113 (12%)

Query: 1   NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLT-----KIPDLS-LATNLESLTF 53
            + +++   S I  +    ++ L  ++ + L    ++      ++  L  L  ++  +  
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 54  RGCTSLLETHSSIQYL---NKLIVLNLEHCRSLT--SLSTSIHLESLKTLILS 101
             C ++  T   I  L     L  L L     +            SL +L L 
Sbjct: 122 ISCGNV--TDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 16/180 (8%)

Query: 79  HCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKIC 138
             +S+T   T   L S+  +I +  ++ +K    I+ L ++  L L   ++L  + + + 
Sbjct: 27  KKKSVTDAVTQNELNSIDQIIAN--NSDIKSVQGIQYLPNVRYLALGG-NKLHDISA-LK 82

Query: 139 KLKSLERLNLSGCSNLQRLPNEL-GNLEALKELKAEGIAIREVPSSIV-CLKNLGRLSFE 196
           +L +L  L L+G   LQ LPN +   L  LKEL      ++ +P  +   L NL  L+  
Sbjct: 83  ELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141

Query: 197 S--FKELPECLG---QLSSLRILFLDKNNFERIPESII-CLSHLYWLRISYCERLKSLPE 250
               + LP+  G   +L++L  L L  N  + +PE +   L+ L  LR+    +LKS+P+
Sbjct: 142 HNQLQSLPK--GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPD 198

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 54/298 (18%), Positives = 89/298 (29%), Gaps = 82/298 (27%)

Query: 11  SIKQLWKGVQRLVNLKHLNLSHS---------------EHLTKIPDLSLATNLESLTFRG 55
               L   ++ L  L+ L+LS +               +   ++  L L     SL+   
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC--SLSAAS 158

Query: 56  CTSL---LETHSSIQYLN-----------------------KLIVLNLEHC----RSLTS 85
           C  L   L      + L                        +L  L LE C     +   
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 86  LSTSI-HLESLKTLILS-------GCSNLMKLPSSIERLSSLILLNLRNCS----RLEGL 133
           L   +    SL+ L L        G + L      +   S L  L +  C         L
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCP--GLLHPSSRLRTLWIWECGITAKGCGDL 276

Query: 134 PSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLG-- 191
              +   +SL+ L+L+G        NELG+ E  + L      + E    +  L  +   
Sbjct: 277 CRVLRAKESLKELSLAG--------NELGD-EGARLL---CETLLEPGCQLESL-WVKSC 323

Query: 192 RLSFESFKELPECLGQLSSLRILFLDKNNFE-----RIPESII-CLSHLYWLRISYCE 243
             +          L Q   L  L +  N  E      + + +    S L  L ++ C+
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 23/118 (19%)

Query: 126 NCSR--LEGLPSKICKLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEGIAIREVPS 182
            C+R         +   ++L  L +    +LQ L    L  L  L+ L      +R V  
Sbjct: 14  RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA- 72

Query: 183 SIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRIS 240
                              P+       L  L L  N  E +    +    L  L +S
Sbjct: 73  -------------------PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLS 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	492
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.87
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.85
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.85
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.76
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.75
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.74
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.73
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.71
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.65
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.64
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.64
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.62
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.58
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.57
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.54
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.54
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.53
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.52
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.49
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.49
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.45
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.38
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.38
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.3
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.28
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.25
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.25
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.24
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.22
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.03
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.01
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.98
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.96
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.95
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.93
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.83
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.69
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.66
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.6
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.52
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.47
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.1
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.03
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.0
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.98
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.94
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.91
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.69
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.16
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.29
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.73
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.23
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.08

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=2.3e-27  Score=263.56  Aligned_cols=271  Identities=23%  Similarity=0.242  Sum_probs=195.3

Q ss_pred             CceEEEccCCCcc-cccccccC--CCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEe
Q 043408            1 NLVSLEMPHSSIK-QLWKGVQR--LVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLN   76 (492)
Q Consensus         1 nL~~L~L~~s~i~-~l~~~~~~--l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~   76 (492)
                      +|++|+|++|++. .++..+..  +++|++|++++|.+...+|. +.++++|++|+|++|.....+|..++.+++|+.|+
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  448 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK  448 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence            3677777777776 34444444  66777777777766655554 66777777777777766666677777777777777


Q ss_pred             ccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCC
Q 043408           77 LEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ  155 (492)
Q Consensus        77 L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~  155 (492)
                      +++|.....+|..+ .+++|++|++++|...+.+|..+.++++|++|++++|...+.+|.+++.+++|++|++++|...+
T Consensus       449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  528 (768)
T 3rgz_A          449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG  528 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence            77776544566555 67777777777766666677777777777777777777777777777777777777777776666


Q ss_pred             CcccccCCccccccccccccccc-cccc----------------------------------------------------
Q 043408          156 RLPNELGNLEALKELKAEGIAIR-EVPS----------------------------------------------------  182 (492)
Q Consensus       156 ~lp~~l~~l~~L~~L~l~~~~i~-~lp~----------------------------------------------------  182 (492)
                      .+|..++.+++|+.|++++|.+. .+|.                                                    
T Consensus       529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  608 (768)
T 3rgz_A          529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS  608 (768)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred             cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence            77777777777777777777655 3443                                                    


Q ss_pred             ------------------ccccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCccc-ccchhhhcCccccccccc
Q 043408          183 ------------------SIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFE-RIPESIICLSHLYWLRIS  240 (492)
Q Consensus       183 ------------------~~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~  240 (492)
                                        .+..+++|+.|++++|.   .+|..++.++.|+.|+|++|.++ .+|..++.+++|+.|+|+
T Consensus       609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs  688 (768)
T 3rgz_A          609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS  688 (768)
T ss_dssp             GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence                              23345678888888876   58888999999999999999987 788899999999999999


Q ss_pred             cccccccCCCC---Ccccceeecccccccccccc
Q 043408          241 YCERLKSLPEL---PCDLSDIEAHCCSSLEALSG  271 (492)
Q Consensus       241 ~c~~l~~lp~l---~~sL~~L~~~~C~~L~~l~~  271 (492)
                      +|+..+.+|+.   .++|+.|+++++.--..+|.
T Consensus       689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             SSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             CCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            98877788865   45678888888754445543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=2e-27  Score=236.13  Aligned_cols=243  Identities=18%  Similarity=0.176  Sum_probs=130.0

Q ss_pred             CCCcEEEccCCCCCC--CCCC-CCCCCCccEEEeeC-cccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCE
Q 043408           23 VNLKHLNLSHSEHLT--KIPD-LSLATNLESLTFRG-CTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKT   97 (492)
Q Consensus        23 ~~L~~L~Ls~~~~l~--~~p~-l~~~~nL~~L~L~~-c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~   97 (492)
                      .+++.|+|+++.+..  .+|. +.++++|++|+|++ +.....+|..++.+++|++|++++|.....+|..+ ++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            345555555555443  3332 55555555555553 33333455555555555555555554333444433 5555555


Q ss_pred             EEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCC-CCCEEeccCCCCCCCcccccCCccccccccccccc
Q 043408           98 LILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLK-SLERLNLSGCSNLQRLPNELGNLEALKELKAEGIA  176 (492)
Q Consensus        98 L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~  176 (492)
                      |++++|.....+|..+..+++|++|++++|...+.+|..++.++ +|++|++++|...+.+|..++.++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            55555444444555555555555555555555545555555555 555555555544445555555554 5555555555


Q ss_pred             cc-ccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCccc-ccchhhhcCccccccccccccccccCCCC-
Q 043408          177 IR-EVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFE-RIPESIICLSHLYWLRISYCERLKSLPEL-  251 (492)
Q Consensus       177 i~-~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l-  251 (492)
                      +. ..|..+..+++|+.|+++++.  ..+..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|+..+.+|.. 
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence            55 334445555555555555554  12233555566666666666665 55666666666666666666555555553 


Q ss_pred             -Ccccceeeccccccc
Q 043408          252 -PCDLSDIEAHCCSSL  266 (492)
Q Consensus       252 -~~sL~~L~~~~C~~L  266 (492)
                       .++|+.+++.+.+.+
T Consensus       289 ~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          289 NLQRFDVSAYANNKCL  304 (313)
T ss_dssp             TGGGSCGGGTCSSSEE
T ss_pred             cccccChHHhcCCCCc
Confidence             234445555544433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.94  E-value=1.1e-26  Score=258.17  Aligned_cols=289  Identities=18%  Similarity=0.199  Sum_probs=247.2

Q ss_pred             CceEEEccCCCcc-cccccccCCC-CCcEEEccCCCCCCCCCC-CCC--CCCccEEEeeCcccCccccccccCCcCCcEE
Q 043408            1 NLVSLEMPHSSIK-QLWKGVQRLV-NLKHLNLSHSEHLTKIPD-LSL--ATNLESLTFRGCTSLLETHSSIQYLNKLIVL   75 (492)
Q Consensus         1 nL~~L~L~~s~i~-~l~~~~~~l~-~L~~L~Ls~~~~l~~~p~-l~~--~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L   75 (492)
                      +|++|+|++|++. .+|..+..++ +|++|+|++|.+...+|. +..  +++|++|+|++|.....+|..++.+++|++|
T Consensus       344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  423 (768)
T 3rgz_A          344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL  423 (768)
T ss_dssp             TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred             CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence            5899999999998 7888888887 999999999988765553 555  7899999999998888899999999999999


Q ss_pred             eccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408           76 NLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL  154 (492)
Q Consensus        76 ~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l  154 (492)
                      ++++|.....+|..+ ++++|++|++++|...+.+|..+..+++|++|++++|...+.+|..+.++++|++|++++|...
T Consensus       424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  503 (768)
T 3rgz_A          424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT  503 (768)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence            999997555777666 8999999999999888889999999999999999999999999999999999999999999988


Q ss_pred             CCcccccCCccccccccccccccc-ccccccccCCCCcccccCCCc---CCcc---------------------------
Q 043408          155 QRLPNELGNLEALKELKAEGIAIR-EVPSSIVCLKNLGRLSFESFK---ELPE---------------------------  203 (492)
Q Consensus       155 ~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~---~lp~---------------------------  203 (492)
                      +.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.   .+|.                           
T Consensus       504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (768)
T 3rgz_A          504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM  583 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred             CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence            899999999999999999999998 889999999999999998875   2332                           


Q ss_pred             -------------------------------------------ccCCCCCCcEEecCCCccc-ccchhhhcCcccccccc
Q 043408          204 -------------------------------------------CLGQLSSLRILFLDKNNFE-RIPESIICLSHLYWLRI  239 (492)
Q Consensus       204 -------------------------------------------~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L  239 (492)
                                                                 .++.+++|+.|+|++|+++ .+|..++.+++|+.|+|
T Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L  663 (768)
T 3rgz_A          584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL  663 (768)
T ss_dssp             CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeC
Confidence                                                       3445678999999999998 89999999999999999


Q ss_pred             ccccccccCCCC---CcccceeecccccccccccccchhhccCCCCCceeeccccCC
Q 043408          240 SYCERLKSLPEL---PCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEV  293 (492)
Q Consensus       240 ~~c~~l~~lp~l---~~sL~~L~~~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~c~l  293 (492)
                      ++|...+.+|+.   ..+|+.|+++++.--..+|..+...    .....++++++++
T Consensus       664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l----~~L~~L~ls~N~l  716 (768)
T 3rgz_A          664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL----TMLTEIDLSNNNL  716 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC----CCCSEEECCSSEE
T ss_pred             cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC----CCCCEEECcCCcc
Confidence            999888899975   4678899998876444555443222    1223566666543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=9.1e-26  Score=235.06  Aligned_cols=269  Identities=18%  Similarity=0.162  Sum_probs=204.5

Q ss_pred             CceEEEccCCCcccc-cccccCCCCCcEEEccCCCCCCCCC--CCCCCCCccEEEeeCcccCccccccccCCcCCcEEec
Q 043408            1 NLVSLEMPHSSIKQL-WKGVQRLVNLKHLNLSHSEHLTKIP--DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNL   77 (492)
Q Consensus         1 nL~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L   77 (492)
                      +|++|+|++|+|+.+ +..+..+++|++|+|++|.....++  .+.++++|++|+|++|......|..++.+++|++|++
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            589999999999987 5789999999999999998765553  3899999999999998877777888999999999999


Q ss_pred             cCCCCCcccCCc--c-CCCCCCEEEeeCCCCCcccCcc-ccCCCCCcEEEcccCCCCCccccccCC--------------
Q 043408           78 EHCRSLTSLSTS--I-HLESLKTLILSGCSNLMKLPSS-IERLSSLILLNLRNCSRLEGLPSKICK--------------  139 (492)
Q Consensus        78 ~~~~~l~~lp~~--~-~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~--------------  139 (492)
                      ++|......+..  + .+++|++|++++|......|.. +.++++|++|++++|...+..|..+..              
T Consensus       111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n  190 (455)
T 3v47_A          111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI  190 (455)
T ss_dssp             TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred             CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence            998743333332  3 7999999999998766555665 899999999999999877666654443              


Q ss_pred             --------------------CCCCCEEeccCCCCCCCcccccC-------------------------------------
Q 043408          140 --------------------LKSLERLNLSGCSNLQRLPNELG-------------------------------------  162 (492)
Q Consensus       140 --------------------l~~L~~L~Ls~c~~l~~lp~~l~-------------------------------------  162 (492)
                                          +++|++|++++|...+..|..+.                                     
T Consensus       191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  270 (455)
T 3v47_A          191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK  270 (455)
T ss_dssp             BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG
T ss_pred             cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccc
Confidence                                35688888887755433222111                                     


Q ss_pred             --Cccccccccccccccccc-ccccccCCCCcccccCCCcC---CccccCCCCCCcEEecCCCccccc-chhhhcCcccc
Q 043408          163 --NLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRILFLDKNNFERI-PESIICLSHLY  235 (492)
Q Consensus       163 --~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~  235 (492)
                        ..++|+.|++++|.+..+ |..+..+++|+.|+++++.-   .|..+..+++|+.|+|++|.++.+ |..+..+++|+
T Consensus       271 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE  350 (455)
T ss_dssp             GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred             cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence              124678888888887754 56678888899999888762   456788888999999999988865 56778888999


Q ss_pred             ccccccccccccCCCC---Ccccceeeccccccccccc
Q 043408          236 WLRISYCERLKSLPEL---PCDLSDIEAHCCSSLEALS  270 (492)
Q Consensus       236 ~L~L~~c~~l~~lp~l---~~sL~~L~~~~C~~L~~l~  270 (492)
                      .|++++|......|..   .++|+.|++.++ .++.++
T Consensus       351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~  387 (455)
T 3v47_A          351 VLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVP  387 (455)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred             EEECCCCcccccChhhccccccccEEECCCC-ccccCC
Confidence            9999887654443432   467888888775 355444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=2.3e-25  Score=242.34  Aligned_cols=222  Identities=18%  Similarity=0.206  Sum_probs=152.8

Q ss_pred             CceEEEccCCCccc------------------cccccc--CCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcc-c
Q 043408            1 NLVSLEMPHSSIKQ------------------LWKGVQ--RLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCT-S   58 (492)
Q Consensus         1 nL~~L~L~~s~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~-~   58 (492)
                      +|++|+|++|+++.                  +|..+.  .+++|++|+|++|.+...+|. ++++++|++|+|++|. .
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence            58999999999998                  999999  999999999999998888886 9999999999999987 4


Q ss_pred             Cc-cccccccCC------cCCcEEeccCCCCCcccCC--cc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCC
Q 043408           59 LL-ETHSSIQYL------NKLIVLNLEHCRSLTSLST--SI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCS  128 (492)
Q Consensus        59 l~-~~~~si~~L------~~L~~L~L~~~~~l~~lp~--~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~  128 (492)
                      .. .+|..++.+      ++|++|++++|. +..+|.  .+ ++++|++|++++|...+.+| .++.+++|++|++++|.
T Consensus       287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~  364 (636)
T 4eco_A          287 SGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ  364 (636)
T ss_dssp             CHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred             ccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence            44 688888776      899999999886 558887  44 88889999988876554666 66666666666666655


Q ss_pred             CCCccccccCCCCC-CCEEeccCCCCCCCcccccCCcc--cccccccccccccc-cccccc-------cCCCCcccccCC
Q 043408          129 RLEGLPSKICKLKS-LERLNLSGCSNLQRLPNELGNLE--ALKELKAEGIAIRE-VPSSIV-------CLKNLGRLSFES  197 (492)
Q Consensus       129 ~l~~lp~~i~~l~~-L~~L~Ls~c~~l~~lp~~l~~l~--~L~~L~l~~~~i~~-lp~~~~-------~l~~L~~L~l~~  197 (492)
                      .. .+|..+..+++ |++|++++|... .+|..++.+.  +|+.|++++|.+.. +|..+.       .+++|+.|++++
T Consensus       365 l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~  442 (636)
T 4eco_A          365 IT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN  442 (636)
T ss_dssp             EE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred             cc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence            44 55656666666 666666665433 5555554433  55555555555542 333343       444555555555


Q ss_pred             Cc--CCcccc-CCCCCCcEEecCCCcccccch
Q 043408          198 FK--ELPECL-GQLSSLRILFLDKNNFERIPE  226 (492)
Q Consensus       198 ~~--~lp~~l-~~l~~L~~L~L~~n~l~~lp~  226 (492)
                      |.  .+|..+ ..+++|+.|+|++|.++.+|.
T Consensus       443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~  474 (636)
T 4eco_A          443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPK  474 (636)
T ss_dssp             SCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred             CccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence            43  233322 234555555555555554443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=4.5e-25  Score=231.51  Aligned_cols=260  Identities=20%  Similarity=0.162  Sum_probs=152.5

Q ss_pred             ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEecc
Q 043408            2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLE   78 (492)
Q Consensus         2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~   78 (492)
                      |++|+|++|+|+.++ ..+..+++|++|+|++|.+....|. |.++++|++|+|++|. +..+|. .+..+++|++|+|+
T Consensus        34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECT
T ss_pred             CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECC
Confidence            566777777776664 4566666777777766655444343 6666666666666644 333333 34566666666666


Q ss_pred             CCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccC------------------------CCCCcc
Q 043408           79 HCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNC------------------------SRLEGL  133 (492)
Q Consensus        79 ~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~------------------------~~l~~l  133 (492)
                      +|......+..+ ++++|++|++++|......+..+.++++|++|++++|                        ......
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  192 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR  192 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence            655322223222 4555555555554333333334455555555555554                        443333


Q ss_pred             ccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccccccc-ccccCCCCcccccCCCc--C-CccccCCCC
Q 043408          134 PSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFK--E-LPECLGQLS  209 (492)
Q Consensus       134 p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~--~-lp~~l~~l~  209 (492)
                      +..+..+++|+.|++++|...+.+|.......+|+.|++++|.++.+|. .+..+++|+.|+++++.  . .+..+..++
T Consensus       193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (477)
T 2id5_A          193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL  272 (477)
T ss_dssp             TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred             hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence            3345555555666665555555555554445566777777777776663 46677777777777765  2 233567777


Q ss_pred             CCcEEecCCCccccc-chhhhcCccccccccccccccccCCCC----Ccccceeecccc
Q 043408          210 SLRILFLDKNNFERI-PESIICLSHLYWLRISYCERLKSLPEL----PCDLSDIEAHCC  263 (492)
Q Consensus       210 ~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~l----~~sL~~L~~~~C  263 (492)
                      +|+.|+|++|.++.+ |..+..+++|+.|+|++| .++.+|..    .++|+.|++.++
T Consensus       273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             cCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence            777777777777754 556777777777777776 35555531    356666666554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=5.8e-26  Score=225.59  Aligned_cols=247  Identities=18%  Similarity=0.179  Sum_probs=220.6

Q ss_pred             CceEEEccCCCcc---cccccccCCCCCcEEEccC-CCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEE
Q 043408            1 NLVSLEMPHSSIK---QLWKGVQRLVNLKHLNLSH-SEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVL   75 (492)
Q Consensus         1 nL~~L~L~~s~i~---~l~~~~~~l~~L~~L~Ls~-~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L   75 (492)
                      ++++|+|+++++.   .++..+..+++|++|+|++ |.+...+|. ++++++|++|+|++|.....+|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            4789999999998   5889999999999999995 777767775 9999999999999988777899999999999999


Q ss_pred             eccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCC-CCcEEEcccCCCCCccccccCCCCCCCEEeccCCCC
Q 043408           76 NLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLS-SLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSN  153 (492)
Q Consensus        76 ~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~  153 (492)
                      ++++|.....+|..+ .+++|++|++++|.....+|..+..++ +|++|++++|...+.+|..+..++ |++|++++|..
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            999987555777766 899999999999876668999999998 999999999998888999999987 99999999888


Q ss_pred             CCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCccc-ccchhhh
Q 043408          154 LQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFE-RIPESII  229 (492)
Q Consensus       154 l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~  229 (492)
                      .+..|..++.+++|+.|++++|.+...+..+..+++|+.|++++|.   .+|..+..+++|+.|+|++|+++ .+|.. .
T Consensus       210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~  288 (313)
T 1ogq_A          210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T
T ss_pred             cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c
Confidence            7788899999999999999999999766668899999999999987   57889999999999999999998 67765 8


Q ss_pred             cCccccccccccccccccCC
Q 043408          230 CLSHLYWLRISYCERLKSLP  249 (492)
Q Consensus       230 ~l~~L~~L~L~~c~~l~~lp  249 (492)
                      .+++|+.|++++|+.+...|
T Consensus       289 ~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          289 NLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTT
T ss_pred             cccccChHHhcCCCCccCCC
Confidence            89999999999998776554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=5.9e-25  Score=224.66  Aligned_cols=255  Identities=17%  Similarity=0.110  Sum_probs=180.7

Q ss_pred             CceEEEccCCCccccccc-ccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            1 NLVSLEMPHSSIKQLWKG-VQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      +|+.|+++++.++.+|.. +..+++|++|+|++|.+....+ .+..+++|++|+|++|......|..++.+++|++|+++
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            477888999988888855 5778899999999887655444 48888999999999876555556667888999999998


Q ss_pred             CCCCCcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCC--------------
Q 043408           79 HCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKS--------------  142 (492)
Q Consensus        79 ~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~--------------  142 (492)
                      +|. +..+|...  ++++|++|++++|......+..+..+++|++|++++|.....-   +..+++              
T Consensus       126 ~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          126 RND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             SSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred             CCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccccc
Confidence            875 66777653  7889999999987655544566888899999999888765432   223334              


Q ss_pred             -----CCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcC---CccccCCCCCCcEE
Q 043408          143 -----LERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRIL  214 (492)
Q Consensus       143 -----L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L  214 (492)
                           |++|++++|. +..+|.  ...++|+.|++++|.+... ..+..+++|+.|+++++.-   .|..+..+++|+.|
T Consensus       202 ~~~~~L~~L~l~~n~-l~~~~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (390)
T 3o6n_A          202 AIPIAVEELDASHNS-INVVRG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  277 (390)
T ss_dssp             ECCSSCSEEECCSSC-CCEEEC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             CCCCcceEEECCCCe-eeeccc--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence                 4444444432 222222  1235677777777777765 3567777888888877752   35677777888888


Q ss_pred             ecCCCcccccchhhhcCccccccccccccccccCCCC---Ccccceeeccccc
Q 043408          215 FLDKNNFERIPESIICLSHLYWLRISYCERLKSLPEL---PCDLSDIEAHCCS  264 (492)
Q Consensus       215 ~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~sL~~L~~~~C~  264 (492)
                      +|++|+++.+|..+..+++|+.|++++|+ +..+|..   .++|+.|++.++.
T Consensus       278 ~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          278 YISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             ECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred             ECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence            88888877777767777788888888763 5556542   3567777777664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=1.6e-25  Score=243.56  Aligned_cols=266  Identities=17%  Similarity=0.147  Sum_probs=201.9

Q ss_pred             CceEEEccCCC-ccc--ccccccCC------CCCcEEEccCCCCCCCCCC---CCCCCCccEEEeeCcccCccccccccC
Q 043408            1 NLVSLEMPHSS-IKQ--LWKGVQRL------VNLKHLNLSHSEHLTKIPD---LSLATNLESLTFRGCTSLLETHSSIQY   68 (492)
Q Consensus         1 nL~~L~L~~s~-i~~--l~~~~~~l------~~L~~L~Ls~~~~l~~~p~---l~~~~nL~~L~L~~c~~l~~~~~si~~   68 (492)
                      +|++|+|++|+ ++.  +|..++.+      ++|++|+|++|.+. .+|.   ++++++|++|+|++|...+.+| .++.
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~  351 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS  351 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence            57888888887 774  77777665      88888888888876 6665   8888888888888877666788 7888


Q ss_pred             CcCCcEEeccCCCCCcccCCcc-CCCC-CCEEEeeCCCCCcccCccccCCC--CCcEEEcccCCCCCccccccC------
Q 043408           69 LNKLIVLNLEHCRSLTSLSTSI-HLES-LKTLILSGCSNLMKLPSSIERLS--SLILLNLRNCSRLEGLPSKIC------  138 (492)
Q Consensus        69 L~~L~~L~L~~~~~l~~lp~~~-~l~~-L~~L~L~~c~~l~~lp~~i~~l~--~L~~L~L~~~~~l~~lp~~i~------  138 (492)
                      +++|++|++++|. +..+|..+ .+++ |++|++++|. +..+|..+..++  +|++|++++|...+..|..+.      
T Consensus       352 l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~  429 (636)
T 4eco_A          352 EIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP  429 (636)
T ss_dssp             EEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred             CCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence            8888888888876 55777666 7777 8888888865 447887776655  888888888888887777777      


Q ss_pred             -CCCCCCEEeccCCCCCCCcccc-cCCcccccccccccccccccccccccC--------CCCcccccCCCc--CCccccC
Q 043408          139 -KLKSLERLNLSGCSNLQRLPNE-LGNLEALKELKAEGIAIREVPSSIVCL--------KNLGRLSFESFK--ELPECLG  206 (492)
Q Consensus       139 -~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~lp~~~~~l--------~~L~~L~l~~~~--~lp~~l~  206 (492)
                       .+++|++|++++|... .+|.. +..+++|+.|++++|.+..+|..+...        ++|+.|++++|.  .+|..+.
T Consensus       430 ~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  508 (636)
T 4eco_A          430 FKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR  508 (636)
T ss_dssp             CCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred             ccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence             7778888888886544 56654 445788888888888888777654332        278888888775  5777776


Q ss_pred             --CCCCCcEEecCCCcccccchhhhcCcccccccccc------ccccccCCCC---Ccccceeeccccccccccccc
Q 043408          207 --QLSSLRILFLDKNNFERIPESIICLSHLYWLRISY------CERLKSLPEL---PCDLSDIEAHCCSSLEALSGL  272 (492)
Q Consensus       207 --~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~------c~~l~~lp~l---~~sL~~L~~~~C~~L~~l~~~  272 (492)
                        .+++|+.|+|++|.++.+|..+..+++|+.|++++      |...+.+|..   .++|+.|++.+|.- +.++..
T Consensus       509 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~  584 (636)
T 4eco_A          509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK  584 (636)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence              88888888888888888888888888888888844      4455666653   46778888877654 666553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=4.5e-25  Score=245.90  Aligned_cols=257  Identities=18%  Similarity=0.178  Sum_probs=192.9

Q ss_pred             CceEEEccCCCccc------------------cccccc--CCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcc-c
Q 043408            1 NLVSLEMPHSSIKQ------------------LWKGVQ--RLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCT-S   58 (492)
Q Consensus         1 nL~~L~L~~s~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~-~   58 (492)
                      +|++|+|++|+++.                  +|..++  .+++|++|+|++|.+...+|. ++++++|++|+|++|. .
T Consensus       449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l  528 (876)
T 4ecn_A          449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI  528 (876)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence            58999999999998                  999888  999999999999998888886 8999999999999987 4


Q ss_pred             Cc-cccccccCCc-------CCcEEeccCCCCCcccCC--cc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccC
Q 043408           59 LL-ETHSSIQYLN-------KLIVLNLEHCRSLTSLST--SI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNC  127 (492)
Q Consensus        59 l~-~~~~si~~L~-------~L~~L~L~~~~~l~~lp~--~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~  127 (492)
                      .. .+|..++.+.       +|++|++++|. +..+|.  .+ ++++|++|++++|... .+| .++.+++|+.|+|++|
T Consensus       529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N  605 (876)
T 4ecn_A          529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYN  605 (876)
T ss_dssp             CHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSS
T ss_pred             ccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCC
Confidence            44 5887777665       99999999987 558887  45 8999999999997644 888 8899999999999998


Q ss_pred             CCCCccccccCCCCC-CCEEeccCCCCCCCcccccCCccc--cccccccccccccccc----ccc--cCCCCcccccCCC
Q 043408          128 SRLEGLPSKICKLKS-LERLNLSGCSNLQRLPNELGNLEA--LKELKAEGIAIREVPS----SIV--CLKNLGRLSFESF  198 (492)
Q Consensus       128 ~~l~~lp~~i~~l~~-L~~L~Ls~c~~l~~lp~~l~~l~~--L~~L~l~~~~i~~lp~----~~~--~l~~L~~L~l~~~  198 (492)
                      ... .+|..+..+++ |+.|++++|... .+|..++.+..  |+.|++++|.+...+.    .+.  .+++|+.|++++|
T Consensus       606 ~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N  683 (876)
T 4ecn_A          606 QIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN  683 (876)
T ss_dssp             CCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred             ccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence            766 88888888888 999999987644 78877766644  7777777777753322    222  2346777777666


Q ss_pred             c--CCccccC-CCCCCcEEecCCCcccccchhhhcC--------ccccccccccccccccCCCC-----Ccccceeeccc
Q 043408          199 K--ELPECLG-QLSSLRILFLDKNNFERIPESIICL--------SHLYWLRISYCERLKSLPEL-----PCDLSDIEAHC  262 (492)
Q Consensus       199 ~--~lp~~l~-~l~~L~~L~L~~n~l~~lp~~l~~l--------~~L~~L~L~~c~~l~~lp~l-----~~sL~~L~~~~  262 (492)
                      .  .+|..+. .+++|+.|+|++|.++.+|..+...        ++|+.|+|++|+ +..+|..     .++|+.|++.+
T Consensus       684 ~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~  762 (876)
T 4ecn_A          684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSY  762 (876)
T ss_dssp             CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCS
T ss_pred             cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCC
Confidence            5  3555443 5667777777777766666544432        267777777763 4456542     24666666665


Q ss_pred             c
Q 043408          263 C  263 (492)
Q Consensus       263 C  263 (492)
                      +
T Consensus       763 N  763 (876)
T 4ecn_A          763 N  763 (876)
T ss_dssp             S
T ss_pred             C
Confidence            5

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=6e-25  Score=219.72  Aligned_cols=218  Identities=28%  Similarity=0.380  Sum_probs=158.8

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH   79 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~   79 (492)
                      ++++|+|++++++.+|..+..+++|++|+|++|.+. .+|. ++.+++|++|+|++|... .+|..++.+++|++|++++
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred             ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence            367788888888888877777888888888887766 5554 777888888888876443 7777788888888888888


Q ss_pred             CCCCcccCCcc-C---------CCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEecc
Q 043408           80 CRSLTSLSTSI-H---------LESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLS  149 (492)
Q Consensus        80 ~~~l~~lp~~~-~---------l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls  149 (492)
                      |..+..+|..+ .         +++|++|++++|. +..+|..++++++|++|+|++|... .+|..++.+++|++|+++
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECT
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECc
Confidence            77777777654 2         7777777777753 4467777777777777777776654 456667777777777777


Q ss_pred             CCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcc-cccchhh
Q 043408          150 GCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNF-ERIPESI  228 (492)
Q Consensus       150 ~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l-~~lp~~l  228 (492)
                      +|...+.+|..++.+++|+.|++++|.+..                    .+|..++.+++|+.|+|++|++ ..+|..+
T Consensus       238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~--------------------~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          238 GCTALRNYPPIFGGRAPLKRLILKDCSNLL--------------------TLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             TCTTCCBCCCCTTCCCCCCEEECTTCTTCC--------------------BCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             CCcchhhhHHHhcCCCCCCEEECCCCCchh--------------------hcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            777777777777777777777776654331                    2445567778888888888874 4788888


Q ss_pred             hcCccccccccccc
Q 043408          229 ICLSHLYWLRISYC  242 (492)
Q Consensus       229 ~~l~~L~~L~L~~c  242 (492)
                      .++++|+.+++..+
T Consensus       298 ~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          298 AQLPANCIILVPPH  311 (328)
T ss_dssp             GGSCTTCEEECCGG
T ss_pred             hhccCceEEeCCHH
Confidence            88888888887763

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=8.3e-25  Score=236.17  Aligned_cols=241  Identities=20%  Similarity=0.181  Sum_probs=126.0

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      |++|+++++.++.++ .+..+++|+.|++++|.+ +.+|.+ .+++|++|++++|.....+  .++.+++|++|++++|.
T Consensus       287 L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  361 (606)
T 3vq2_A          287 VSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA  361 (606)
T ss_dssp             CSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC
T ss_pred             CCEEEecCccchhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCc
Confidence            445555555555554 455555555555555554 444544 5555555555555443333  34455555555555544


Q ss_pred             CCccc---CCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccc-cccCCCCCCCEEeccCCCCCCC
Q 043408           82 SLTSL---STSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLP-SKICKLKSLERLNLSGCSNLQR  156 (492)
Q Consensus        82 ~l~~l---p~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~  156 (492)
                       +...   +..+ .+++|++|++++|. +..+|..+..+++|++|++++|...+..| ..+..+++|++|++++|...+.
T Consensus       362 -l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  439 (606)
T 3vq2_A          362 -LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID  439 (606)
T ss_dssp             -EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred             -cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence             2222   2222 45555555555543 33445555555555555555555444444 3455555555555555555444


Q ss_pred             cccccCCcccccccccccccccc--cccccccCCCCcccccCCCcC---CccccCCCCCCcEEecCCCccccc-chhhhc
Q 043408          157 LPNELGNLEALKELKAEGIAIRE--VPSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRILFLDKNNFERI-PESIIC  230 (492)
Q Consensus       157 lp~~l~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~  230 (492)
                      .|..++.+++|+.|++++|.+..  +|..+..+++|+.|++++|.-   .|..++.+++|+.|+|++|+++.+ |..+..
T Consensus       440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  519 (606)
T 3vq2_A          440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ  519 (606)
T ss_dssp             CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred             chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence            55555555555555555555553  455555555555555555541   334455555555555555555533 445555


Q ss_pred             CccccccccccccccccCCC
Q 043408          231 LSHLYWLRISYCERLKSLPE  250 (492)
Q Consensus       231 l~~L~~L~L~~c~~l~~lp~  250 (492)
                      +++|+.|++++|+ ++.+|.
T Consensus       520 l~~L~~L~l~~N~-l~~~p~  538 (606)
T 3vq2_A          520 LYSLSTLDCSFNR-IETSKG  538 (606)
T ss_dssp             CTTCCEEECTTSC-CCCEES
T ss_pred             CCcCCEEECCCCc-CcccCH
Confidence            5555555555543 344443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.92  E-value=1.5e-24  Score=234.10  Aligned_cols=262  Identities=19%  Similarity=0.136  Sum_probs=212.6

Q ss_pred             CceEEEccCCCcccccc-cccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            1 NLVSLEMPHSSIKQLWK-GVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      +|++|++++++++.++. .+..+++|++|++++|.+. .+| .+..+++|++|++++|......|..+..+++|++|+++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            37899999999998874 4888999999999999866 455 58899999999999987766667788999999999999


Q ss_pred             CCCCCcccCCc-c-CCCCCCEEEeeCCCCCccc--CccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408           79 HCRSLTSLSTS-I-HLESLKTLILSGCSNLMKL--PSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL  154 (492)
Q Consensus        79 ~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~l--p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l  154 (492)
                      +|.....++.. + .+++|++|++++|......  +..+..+++|++|++++|...+..|..+..+++|++|++++|...
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            98765566654 3 8999999999997655433  667899999999999999887777888899999999999998766


Q ss_pred             CCccc-ccCCccccccccccccccccc-ccccccCCCCcccccCCCcC------CccccCCCCCCcEEecCCCccccc-c
Q 043408          155 QRLPN-ELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFKE------LPECLGQLSSLRILFLDKNNFERI-P  225 (492)
Q Consensus       155 ~~lp~-~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~------lp~~l~~l~~L~~L~L~~n~l~~l-p  225 (492)
                      +..+. .++.+++|+.|++++|.+... |..+..+++|+.|++++|.-      .+..+..+++|+.|++++|.++.+ |
T Consensus       414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  493 (606)
T 3t6q_A          414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ  493 (606)
T ss_dssp             CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred             CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence            65554 488899999999999998854 56678899999999998862      235688899999999999998865 5


Q ss_pred             hhhhcCccccccccccccccccCCCCC---cccceeeccccc
Q 043408          226 ESIICLSHLYWLRISYCERLKSLPELP---CDLSDIEAHCCS  264 (492)
Q Consensus       226 ~~l~~l~~L~~L~L~~c~~l~~lp~l~---~sL~~L~~~~C~  264 (492)
                      ..+..+++|+.|++++|+.....|+..   .+| .|++.++.
T Consensus       494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~  534 (606)
T 3t6q_A          494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH  534 (606)
T ss_dssp             TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred             hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence            788899999999999987655555443   445 67777663

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=3.6e-24  Score=226.95  Aligned_cols=254  Identities=19%  Similarity=0.132  Sum_probs=164.1

Q ss_pred             eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      ++|++++++++.+|..+.  ++|++|+|++|.+....| .+.++++|++|+|++|......|..++.+++|++|++++|.
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            467888888888876665  788888888877655444 37778888888888876555556777788888888888775


Q ss_pred             CCcccCCccCCCCCCEEEeeCCCCCc-ccCccccCCCCCcEEEcccCCCCCccccccCCCCCC--CEEeccCCCC-----
Q 043408           82 SLTSLSTSIHLESLKTLILSGCSNLM-KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSL--ERLNLSGCSN-----  153 (492)
Q Consensus        82 ~l~~lp~~~~l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~Ls~c~~-----  153 (492)
                       ++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|...+   ..+..+++|  ++|++++|..     
T Consensus        81 -l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~  155 (520)
T 2z7x_B           81 -LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKE  155 (520)
T ss_dssp             -CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred             -eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccc
Confidence             5567766 77888888888865544 356777778888777777776543   123333333  4444444433     


Q ss_pred             --------------------------------------------------------------------------------
Q 043408          154 --------------------------------------------------------------------------------  153 (492)
Q Consensus       154 --------------------------------------------------------------------------------  153 (492)
                                                                                                      
T Consensus       156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~  235 (520)
T 2z7x_B          156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN  235 (520)
T ss_dssp             CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred             ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence                                                                                            


Q ss_pred             ------------------------CCCccccc-----CCccccccccccccccccccc-c--------------------
Q 043408          154 ------------------------LQRLPNEL-----GNLEALKELKAEGIAIREVPS-S--------------------  183 (492)
Q Consensus       154 ------------------------l~~lp~~l-----~~l~~L~~L~l~~~~i~~lp~-~--------------------  183 (492)
                                              .+.+|..+     +.+++|+.+++++|.+ .+|. .                    
T Consensus       236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l  314 (520)
T 2z7x_B          236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRM  314 (520)
T ss_dssp             HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred             HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcc
Confidence                                    22334333     3444444444433333 2220 0                    


Q ss_pred             -----cccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCcccc---cchhhhcCccccccccccccccccCCC--
Q 043408          184 -----IVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFER---IPESIICLSHLYWLRISYCERLKSLPE--  250 (492)
Q Consensus       184 -----~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~c~~l~~lp~--  250 (492)
                           ...+++|+.|+++++.   .+|..++.+++|+.|++++|.++.   +|..+..+++|+.|++++|.....+|.  
T Consensus       315 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~  394 (520)
T 2z7x_B          315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD  394 (520)
T ss_dssp             CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred             ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence                 0456677777777765   256677778888888888888773   455677788888888888765444653  


Q ss_pred             --CCcccceeeccccc
Q 043408          251 --LPCDLSDIEAHCCS  264 (492)
Q Consensus       251 --l~~sL~~L~~~~C~  264 (492)
                        ..++|+.|++.+|.
T Consensus       395 ~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             CCCCTTCCEEECCSSC
T ss_pred             hccCccCCEEECcCCC
Confidence              24677777777764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=4.7e-24  Score=227.45  Aligned_cols=267  Identities=20%  Similarity=0.214  Sum_probs=197.9

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      +|++|+|++|+++.++ ..+..+++|++|+|++|.+....|+ ++++++|++|+|++|......+..++.+++|++|+++
T Consensus        27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred             CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence            4788999999998774 6788899999999999887665554 8889999999999876555555558889999999999


Q ss_pred             CCCCCc-ccCCcc-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCC----------------
Q 043408           79 HCRSLT-SLSTSI-HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICK----------------  139 (492)
Q Consensus        79 ~~~~l~-~lp~~~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~----------------  139 (492)
                      +|.... ..|..+ ++++|++|++++|.....+| ..+.++++|++|++++|...+..|..++.                
T Consensus       107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  186 (549)
T 2z81_A          107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF  186 (549)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred             CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence            886322 234434 78888888888877666665 45777888888888877766555554443                


Q ss_pred             --------CCCCCEEeccCCCCCC--------------------------------------------------------
Q 043408          140 --------LKSLERLNLSGCSNLQ--------------------------------------------------------  155 (492)
Q Consensus       140 --------l~~L~~L~Ls~c~~l~--------------------------------------------------------  155 (492)
                              +++|++|++++|...+                                                        
T Consensus       187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~  266 (549)
T 2z81_A          187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL  266 (549)
T ss_dssp             HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECC
T ss_pred             cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccc
Confidence                    3455555555543222                                                        


Q ss_pred             ---------------------------------------------------------Cccccc-CCcccccccccccccc
Q 043408          156 ---------------------------------------------------------RLPNEL-GNLEALKELKAEGIAI  177 (492)
Q Consensus       156 ---------------------------------------------------------~lp~~l-~~l~~L~~L~l~~~~i  177 (492)
                                                                               .+|..+ +.+++|+.|++++|.+
T Consensus       267 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l  346 (549)
T 2z81_A          267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM  346 (549)
T ss_dssp             SCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCC
T ss_pred             ccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcc
Confidence                                                                     122222 3467888899999988


Q ss_pred             cc-cc---cccccCCCCcccccCCCcC--Cc---cccCCCCCCcEEecCCCcccccchhhhcCccccccccccccccccC
Q 043408          178 RE-VP---SSIVCLKNLGRLSFESFKE--LP---ECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSL  248 (492)
Q Consensus       178 ~~-lp---~~~~~l~~L~~L~l~~~~~--lp---~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~l  248 (492)
                      .. +|   ..++.+++|+.|++++|.-  ++   ..++.+++|+.|++++|+++.+|..+..+++|++|++++|. ++.+
T Consensus       347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l  425 (549)
T 2z81_A          347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVV  425 (549)
T ss_dssp             CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCC
T ss_pred             ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccc
Confidence            74 33   3367889999999999863  33   45889999999999999999999999999999999999976 6666


Q ss_pred             CC-CCcccceeecccccccccc
Q 043408          249 PE-LPCDLSDIEAHCCSSLEAL  269 (492)
Q Consensus       249 p~-l~~sL~~L~~~~C~~L~~l  269 (492)
                      |. .+++|+.|++.+| .++.+
T Consensus       426 ~~~~~~~L~~L~Ls~N-~l~~~  446 (549)
T 2z81_A          426 KTCIPQTLEVLDVSNN-NLDSF  446 (549)
T ss_dssp             CTTSCTTCSEEECCSS-CCSCC
T ss_pred             cchhcCCceEEECCCC-Chhhh
Confidence            65 4578999999887 34433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.3e-24  Score=232.66  Aligned_cols=255  Identities=17%  Similarity=0.109  Sum_probs=170.2

Q ss_pred             CceEEEccCCCccccccc-ccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            1 NLVSLEMPHSSIKQLWKG-VQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      +++.|+++++.+..+|.. +..+++|++|+|++|.+....| .++.+++|++|+|++|......|..++.+++|++|+|+
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            467788888888888754 5668888888888887655554 47888888888888876555445556788888888888


Q ss_pred             CCCCCcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCC--------------
Q 043408           79 HCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKS--------------  142 (492)
Q Consensus        79 ~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~--------------  142 (492)
                      +|. +..+|..+  ++++|++|++++|......|..++++++|++|++++|...+.-   +..+++              
T Consensus       132 ~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          132 RND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             SSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred             CCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc
Confidence            875 66666543  7888888888887655555566888888888888887655432   222333              


Q ss_pred             -----CCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcC---CccccCCCCCCcEE
Q 043408          143 -----LERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRIL  214 (492)
Q Consensus       143 -----L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L  214 (492)
                           |+.|++++|.. ..++..+  .++|+.|++++|.+... ..+..+++|+.|++++|.-   .|..++.+++|+.|
T Consensus       208 ~~~~~L~~L~ls~n~l-~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  283 (597)
T 3oja_B          208 AIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  283 (597)
T ss_dssp             ECCTTCSEEECCSSCC-CEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             cCCchhheeeccCCcc-ccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence                 44444444321 2222211  24566777777766654 4566777777777777652   45667777777777


Q ss_pred             ecCCCcccccchhhhcCccccccccccccccccCCCC---Ccccceeeccccc
Q 043408          215 FLDKNNFERIPESIICLSHLYWLRISYCERLKSLPEL---PCDLSDIEAHCCS  264 (492)
Q Consensus       215 ~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~sL~~L~~~~C~  264 (492)
                      +|++|.++.+|..+..+++|+.|+|++|. +..+|..   .++|+.|++.+|.
T Consensus       284 ~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          284 YISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             ECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred             ECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC
Confidence            77777777777666667777777777764 4455542   3567777776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=3.3e-24  Score=238.90  Aligned_cols=212  Identities=15%  Similarity=0.113  Sum_probs=92.3

Q ss_pred             CCcEEEccCCCCCCCCCC---CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCC-CCEE
Q 043408           24 NLKHLNLSHSEHLTKIPD---LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLES-LKTL   98 (492)
Q Consensus        24 ~L~~L~Ls~~~~l~~~p~---l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~-L~~L   98 (492)
                      +|++|+|++|.+. .+|.   ++++++|++|+|++|... .+| .++.+++|+.|+|++|. +..+|..+ ++++ |++|
T Consensus       549 ~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L  624 (876)
T 4ecn_A          549 KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGL  624 (876)
T ss_dssp             TCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEE
T ss_pred             CccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEE
Confidence            5555555555444 3333   455555555555554322 444 44555555555555544 22444333 4444 5555


Q ss_pred             EeeCCCCCcccCccccCCCC--CcEEEcccCCCCCcccc---ccC--CCCCCCEEeccCCCCCCCccccc-CCccccccc
Q 043408           99 ILSGCSNLMKLPSSIERLSS--LILLNLRNCSRLEGLPS---KIC--KLKSLERLNLSGCSNLQRLPNEL-GNLEALKEL  170 (492)
Q Consensus        99 ~L~~c~~l~~lp~~i~~l~~--L~~L~L~~~~~l~~lp~---~i~--~l~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L  170 (492)
                      ++++|. +..+|..+..++.  |+.|+|++|...+.+|.   .+.  .+.+|+.|++++|... .+|..+ ..+++|+.|
T Consensus       625 ~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L  702 (876)
T 4ecn_A          625 GFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTI  702 (876)
T ss_dssp             ECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEE
T ss_pred             ECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEE
Confidence            555533 2244444443332  55555555444433221   111  1224444444443222 333332 234444444


Q ss_pred             ccccccccccccccccC--------CCCcccccCCCc--CCccccC--CCCCCcEEecCCCcccccchhhhcCccccccc
Q 043408          171 KAEGIAIREVPSSIVCL--------KNLGRLSFESFK--ELPECLG--QLSSLRILFLDKNNFERIPESIICLSHLYWLR  238 (492)
Q Consensus       171 ~l~~~~i~~lp~~~~~l--------~~L~~L~l~~~~--~lp~~l~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~  238 (492)
                      ++++|.+..+|..+...        ++|+.|++++|.  .+|..+.  .+++|+.|+|++|.++.+|..+..+++|+.|+
T Consensus       703 ~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~  782 (876)
T 4ecn_A          703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFG  782 (876)
T ss_dssp             ECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEE
T ss_pred             ECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEE
Confidence            44444444444433221        144444444433  2444443  44444444444444444444444444444444


Q ss_pred             ccc
Q 043408          239 ISY  241 (492)
Q Consensus       239 L~~  241 (492)
                      |++
T Consensus       783 Ls~  785 (876)
T 4ecn_A          783 IRH  785 (876)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=3e-24  Score=223.54  Aligned_cols=263  Identities=19%  Similarity=0.197  Sum_probs=209.7

Q ss_pred             CceEEEccCCCcc-ccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccccc--ccCCcCCcEE
Q 043408            1 NLVSLEMPHSSIK-QLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSS--IQYLNKLIVL   75 (492)
Q Consensus         1 nL~~L~L~~s~i~-~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~s--i~~L~~L~~L   75 (492)
                      +|++|+|++|.+. .++ ..+..+++|++|+|++|.+....|. ++++++|++|+|++|.....++..  ++.+++|++|
T Consensus        55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  134 (455)
T 3v47_A           55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML  134 (455)
T ss_dssp             TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEE
T ss_pred             cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEE
Confidence            5889999999886 554 6788899999999999987766564 899999999999998766555554  8889999999


Q ss_pred             eccCCCCCcccCCc-c-CCCCCCEEEeeCCCCCcccCcccc----------------------------------CCCCC
Q 043408           76 NLEHCRSLTSLSTS-I-HLESLKTLILSGCSNLMKLPSSIE----------------------------------RLSSL  119 (492)
Q Consensus        76 ~L~~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp~~i~----------------------------------~l~~L  119 (492)
                      ++++|......|.. + ++++|++|++++|......+..+.                                  .+++|
T Consensus       135 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L  214 (455)
T 3v47_A          135 VLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI  214 (455)
T ss_dssp             ECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEE
T ss_pred             ECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccccee
Confidence            99998744444553 3 889999999999765544444333                                  33678


Q ss_pred             cEEEcccCCCCCccccccC---------------------------------------CCCCCCEEeccCCCCCCCcccc
Q 043408          120 ILLNLRNCSRLEGLPSKIC---------------------------------------KLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus       120 ~~L~L~~~~~l~~lp~~i~---------------------------------------~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                      ++|++++|...+..|..+.                                       ..++|++|++++|...+..|..
T Consensus       215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  294 (455)
T 3v47_A          215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV  294 (455)
T ss_dssp             EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred             eeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh
Confidence            8999998876654443321                                       1257999999998877778888


Q ss_pred             cCCccccccccccccccccc-ccccccCCCCcccccCCCc--C-CccccCCCCCCcEEecCCCccccc-chhhhcCcccc
Q 043408          161 LGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--E-LPECLGQLSSLRILFLDKNNFERI-PESIICLSHLY  235 (492)
Q Consensus       161 l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~-lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~  235 (492)
                      ++.+++|+.|++++|.+..+ |..+..+++|+.|++++|.  . .+..++.+++|+.|+|++|.++.+ |..+..+++|+
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence            99999999999999999977 5578899999999999986  2 467789999999999999999866 67899999999


Q ss_pred             ccccccccccccCCC----CCcccceeeccccc
Q 043408          236 WLRISYCERLKSLPE----LPCDLSDIEAHCCS  264 (492)
Q Consensus       236 ~L~L~~c~~l~~lp~----l~~sL~~L~~~~C~  264 (492)
                      +|++++|+ ++.+|.    ..++|+.|++.+++
T Consensus       375 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          375 ELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             EEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence            99999975 566664    24688999988764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=4.2e-24  Score=226.45  Aligned_cols=130  Identities=17%  Similarity=0.192  Sum_probs=97.2

Q ss_pred             CCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccc---cccccccCCCCcccccCCCc--C-Cccc-cCCCCC
Q 043408          138 CKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIRE---VPSSIVCLKNLGRLSFESFK--E-LPEC-LGQLSS  210 (492)
Q Consensus       138 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~l~~~~--~-lp~~-l~~l~~  210 (492)
                      ..+++|++|++++|...+.+|..++.+++|+.|++++|.+..   +|..+..+++|+.|++++|.  . +|.. +..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            567888888888887777788888888899999999888874   45667888888888888876  2 5553 677788


Q ss_pred             CcEEecCCCccc-ccchhhhcCccccccccccccccccCCCC---Ccccceeecccccccccccc
Q 043408          211 LRILFLDKNNFE-RIPESIICLSHLYWLRISYCERLKSLPEL---PCDLSDIEAHCCSSLEALSG  271 (492)
Q Consensus       211 L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~sL~~L~~~~C~~L~~l~~  271 (492)
                      |+.|++++|.++ .+|..+.  ++|+.|++++|. ++.+|..   .++|+.|++.++ .++.++.
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~  461 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPD  461 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCCT
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccCH
Confidence            888888888875 4554443  678888888874 5577753   467788888776 4555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=1.3e-23  Score=209.68  Aligned_cols=241  Identities=18%  Similarity=0.220  Sum_probs=199.8

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      |+.+++++++++.+|..+.  ++|++|+|++|.+....+ .+.++++|++|+|++|......|..++.+++|++|++++|
T Consensus        33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            6788999999999987654  689999999998766555 4899999999999998766666888999999999999997


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCC--ccccccCCCCCCCEEeccCCCCCCCcc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLE--GLPSKICKLKSLERLNLSGCSNLQRLP  158 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp  158 (492)
                      . ++.+|..+. ++|++|++++|......+..+.++++|++|++++|....  ..+..+..+++|++|++++|. +..+|
T Consensus       111 ~-l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~  187 (330)
T 1xku_A          111 Q-LKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIP  187 (330)
T ss_dssp             C-CSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC
T ss_pred             c-CCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCC
Confidence            6 677776554 899999999976554444568999999999999988753  567778899999999999964 55677


Q ss_pred             cccCCccccccccccccccccc-ccccccCCCCcccccCCCc--CC-ccccCCCCCCcEEecCCCcccccchhhhcCccc
Q 043408          159 NELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--EL-PECLGQLSSLRILFLDKNNFERIPESIICLSHL  234 (492)
Q Consensus       159 ~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~l-p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L  234 (492)
                      ..+.  ++|+.|++++|.+..+ |..+..+++|+.|+++++.  .+ +..+..+++|+.|+|++|.++.+|..+..+++|
T Consensus       188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L  265 (330)
T 1xku_A          188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI  265 (330)
T ss_dssp             SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred             cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence            6554  7899999999999876 5678899999999999886  23 447888999999999999999999999999999


Q ss_pred             cccccccccccccCCC
Q 043408          235 YWLRISYCERLKSLPE  250 (492)
Q Consensus       235 ~~L~L~~c~~l~~lp~  250 (492)
                      +.|++++|+ ++.+|.
T Consensus       266 ~~L~l~~N~-i~~~~~  280 (330)
T 1xku_A          266 QVVYLHNNN-ISAIGS  280 (330)
T ss_dssp             CEEECCSSC-CCCCCT
T ss_pred             CEEECCCCc-CCccCh
Confidence            999999975 556553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=1.5e-23  Score=209.62  Aligned_cols=254  Identities=18%  Similarity=0.191  Sum_probs=204.7

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      |+.+++++++++.+|..+.  ++|++|+|++|.+....+ .+.++++|++|+|++|......|..++.+++|++|++++|
T Consensus        35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             CCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            6789999999999987664  689999999998765555 4899999999999998766656788999999999999997


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCC--ccccccCCCCCCCEEeccCCCCCCCcc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLE--GLPSKICKLKSLERLNLSGCSNLQRLP  158 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp  158 (492)
                      . +..+|..+. ++|++|++++|......+..+.++++|++|++++|....  ..|..+..+ +|++|++++|. +..+|
T Consensus       113 ~-l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~  188 (332)
T 2ft3_A          113 H-LVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIP  188 (332)
T ss_dssp             C-CCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCC
T ss_pred             c-CCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccC
Confidence            6 667776555 899999999965443333458999999999999988743  566777777 89999999975 44577


Q ss_pred             cccCCcccccccccccccccccc-cccccCCCCcccccCCCc--CC-ccccCCCCCCcEEecCCCcccccchhhhcCccc
Q 043408          159 NELGNLEALKELKAEGIAIREVP-SSIVCLKNLGRLSFESFK--EL-PECLGQLSSLRILFLDKNNFERIPESIICLSHL  234 (492)
Q Consensus       159 ~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~--~l-p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L  234 (492)
                      ..+.  ++|+.|++++|.+..++ ..+..+++|+.|+++++.  .+ +..+..+++|+.|++++|.++.+|..+..+++|
T Consensus       189 ~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L  266 (332)
T 2ft3_A          189 KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL  266 (332)
T ss_dssp             SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTC
T ss_pred             cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccC
Confidence            6654  78999999999999776 578899999999999886  34 347889999999999999999999999999999


Q ss_pred             cccccccccccccCCCC----------Ccccceeeccccc
Q 043408          235 YWLRISYCERLKSLPEL----------PCDLSDIEAHCCS  264 (492)
Q Consensus       235 ~~L~L~~c~~l~~lp~l----------~~sL~~L~~~~C~  264 (492)
                      +.|++++|+ ++.++..          ..+++.|++.+++
T Consensus       267 ~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          267 QVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             CEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             CEEECCCCC-CCccChhHccccccccccccccceEeecCc
Confidence            999999975 5565531          2346667666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=7.4e-24  Score=222.26  Aligned_cols=257  Identities=19%  Similarity=0.186  Sum_probs=202.7

Q ss_pred             eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      +.++.++.+++.+|.++.  ++|+.|+|++|.+....+ .|.++++|++|+|++|......|..+..+++|++|+|++|.
T Consensus        14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            357788899999997764  689999999998766555 49999999999999987666668889999999999999986


Q ss_pred             CCcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccc
Q 043408           82 SLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPN  159 (492)
Q Consensus        82 ~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~  159 (492)
                       +..+|...  ++++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|......+.
T Consensus        92 -l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           92 -LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             -CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             -CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence             77777643  899999999999876666678899999999999999988877788899999999999999865554445


Q ss_pred             ccCCccccccccccccccccccc-ccccCCCCcccccCCCcC---CccccCCCCCCcEEecCCCcccccc-hhhhcCccc
Q 043408          160 ELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFKE---LPECLGQLSSLRILFLDKNNFERIP-ESIICLSHL  234 (492)
Q Consensus       160 ~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L  234 (492)
                      .+..+++|+.|++++|.+..++. .+..+++|+.|+++++..   ++.......+|+.|+|++|.++.+| ..+..+++|
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  250 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL  250 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence            68999999999999999987665 578888999999888652   4444445557777777777777666 356677777


Q ss_pred             cccccccccccccCCC----CCcccceeecccc
Q 043408          235 YWLRISYCERLKSLPE----LPCDLSDIEAHCC  263 (492)
Q Consensus       235 ~~L~L~~c~~l~~lp~----l~~sL~~L~~~~C  263 (492)
                      +.|+|++|. +..++.    ..++|+.|++.++
T Consensus       251 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n  282 (477)
T 2id5_A          251 RFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG  282 (477)
T ss_dssp             CEEECCSSC-CCEECTTSCTTCTTCCEEECCSS
T ss_pred             CeeECCCCc-CCccChhhccccccCCEEECCCC
Confidence            777777764 333332    1345666666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=1.5e-23  Score=210.50  Aligned_cols=250  Identities=22%  Similarity=0.292  Sum_probs=197.7

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|++++++++.++ ++..+++|++|++++|.+. .++.+..+++|++|++++|. +..++ .+..+++|++|++++|
T Consensus        45 ~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l~~n  120 (347)
T 4fmz_A           45 SITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQIT-DISPLSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNED  120 (347)
T ss_dssp             TCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECTTS
T ss_pred             cccEEEEeCCccccch-hhhhcCCccEEEccCCccc-cchhhhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEECcCC
Confidence            4789999999999886 4788999999999998754 45558999999999999974 44554 6888999999999987


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                      . +..++....+++|++|++++|.....++. +..+++|++|++++|......+  +..+++|++|++++|.. ..++. 
T Consensus       121 ~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l-~~~~~-  194 (347)
T 4fmz_A          121 N-ISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI-EDISP-  194 (347)
T ss_dssp             C-CCCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC-CCCGG-
T ss_pred             c-ccCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc-ccccc-
Confidence            6 66666655899999999999876665544 8889999999999987654433  77889999999998754 44544 


Q ss_pred             cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccc
Q 043408          161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR  238 (492)
Q Consensus       161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~  238 (492)
                      +..+++|+.|++++|.+..++. +..+++|+.|++++|.  .++. +..+++|+.|++++|.++.++ .+..+++|+.|+
T Consensus       195 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~  271 (347)
T 4fmz_A          195 LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLN  271 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred             ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEE
Confidence            7778888889998888887766 7788888888888876  3444 788888888888888888774 577888888888


Q ss_pred             cccccccccCCCC--Ccccceeeccccc
Q 043408          239 ISYCERLKSLPEL--PCDLSDIEAHCCS  264 (492)
Q Consensus       239 L~~c~~l~~lp~l--~~sL~~L~~~~C~  264 (492)
                      +++| .+..++.+  .++|+.|++.+|.
T Consensus       272 l~~n-~l~~~~~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          272 VGSN-QISDISVLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             CCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred             ccCC-ccCCChhhcCCCCCCEEECcCCc
Confidence            8887 45555543  4678888888874

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=1.3e-23  Score=226.87  Aligned_cols=240  Identities=20%  Similarity=0.199  Sum_probs=164.1

Q ss_pred             CCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEEEee
Q 043408           24 NLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILS  101 (492)
Q Consensus        24 ~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~  101 (492)
                      +|+.|++++|.+....+. ++.+++|++|++++| .+..+|..++.+++|++|++++|......|..+ .+++|++|+++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            677788877766554444 777778888888775 345777777777888888887776333333333 67778888887


Q ss_pred             CCCCCcccCcc-ccCCCCCcEEEcccCCCCCcc--ccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccc
Q 043408          102 GCSNLMKLPSS-IERLSSLILLNLRNCSRLEGL--PSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR  178 (492)
Q Consensus       102 ~c~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~  178 (492)
                      +|.....+|.. +..+++|++|++++|...+..  +..+..+++|++|++++|...+..|..++.+++|+.|++++|.+.
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            77665555543 777788888888777665544  566777778888888777665556667777777888888877776


Q ss_pred             ccc--cccccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCcccc--cc--hhhhcCccccccccccccccccCC
Q 043408          179 EVP--SSIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFER--IP--ESIICLSHLYWLRISYCERLKSLP  249 (492)
Q Consensus       179 ~lp--~~~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~~--lp--~~l~~l~~L~~L~L~~c~~l~~lp  249 (492)
                      ..+  ..+..+++|+.|++++|.   ..|..++.+++|+.|++++|.++.  ++  ..+..+++|+.|++++|......|
T Consensus       414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  493 (606)
T 3t6q_A          414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ  493 (606)
T ss_dssp             CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred             CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence            442  336777778888877765   245567777788888888887763  22  457777788888888775443334


Q ss_pred             CC---Ccccceeeccccc
Q 043408          250 EL---PCDLSDIEAHCCS  264 (492)
Q Consensus       250 ~l---~~sL~~L~~~~C~  264 (492)
                      ..   .++|+.|++.++.
T Consensus       494 ~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          494 HAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             TTTTTCTTCCEEECCSSC
T ss_pred             hhhccccCCCEEECCCCc
Confidence            32   3567777777663

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.91  E-value=2.6e-23  Score=224.38  Aligned_cols=130  Identities=22%  Similarity=0.201  Sum_probs=94.1

Q ss_pred             CceEEEccCCCcccccc-cccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            1 NLVSLEMPHSSIKQLWK-GVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      +|++|+|++|+++.++. .+..+++|++|+|++|.+....|+ |.++++|++|+|++|......|..++.+++|++|+++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  112 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV  112 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence            46788888888887764 677788888888888876655554 7788888888888876555557778888888888888


Q ss_pred             CCCCCcccC-Ccc-CCCCCCEEEeeCCCCCc-ccCccccCCCCCcEEEcccCCCCC
Q 043408           79 HCRSLTSLS-TSI-HLESLKTLILSGCSNLM-KLPSSIERLSSLILLNLRNCSRLE  131 (492)
Q Consensus        79 ~~~~l~~lp-~~~-~l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~L~~~~~l~  131 (492)
                      +|. +..++ ..+ ++++|++|++++|.... .+|..++++++|++|++++|...+
T Consensus       113 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A          113 ETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             TSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             CCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence            876 44444 333 77788888888765443 467777788888888777776543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=5.4e-24  Score=212.79  Aligned_cols=211  Identities=26%  Similarity=0.342  Sum_probs=138.7

Q ss_pred             CCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeC
Q 043408           23 VNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSG  102 (492)
Q Consensus        23 ~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~  102 (492)
                      .+++.|+|++|.+....+.+..+++|++|+|++|... .+|..++.+++|++|++++|. +.                  
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~------------------  140 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LR------------------  140 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CC------------------
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cc------------------
Confidence            4555666665554322223555555555555554332 455555555555555555543 23                  


Q ss_pred             CCCCcccCccccCCCCCcEEEcccCCCCCccccccC---------CCCCCCEEeccCCCCCCCcccccCCcccccccccc
Q 043408          103 CSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKIC---------KLKSLERLNLSGCSNLQRLPNELGNLEALKELKAE  173 (492)
Q Consensus       103 c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~---------~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~  173 (492)
                           .+|..++++++|++|++++|...+.+|..++         .+++|++|++++|. +..+|..++.+++|+.|+++
T Consensus       141 -----~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~  214 (328)
T 4fcg_A          141 -----ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIR  214 (328)
T ss_dssp             -----CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEE
T ss_pred             -----cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEcc
Confidence                 4444455555555555555555555554443         36677777777653 33666667777777777777


Q ss_pred             cccccccccccccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCcc-cccchhhhcCccccccccccccccccCC
Q 043408          174 GIAIREVPSSIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNF-ERIPESIICLSHLYWLRISYCERLKSLP  249 (492)
Q Consensus       174 ~~~i~~lp~~~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~c~~l~~lp  249 (492)
                      +|.+..+|..+..+++|+.|++++|.   .+|..++.+++|+.|+|++|++ ..+|..+..+++|+.|+|++|+.++.+|
T Consensus       215 ~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          215 NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             SSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             CCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            77777777777777777777777765   4677889999999999999985 5899999999999999999999999999


Q ss_pred             CCCcccceee
Q 043408          250 ELPCDLSDIE  259 (492)
Q Consensus       250 ~l~~sL~~L~  259 (492)
                      +....+..+.
T Consensus       295 ~~l~~L~~L~  304 (328)
T 4fcg_A          295 SLIAQLPANC  304 (328)
T ss_dssp             GGGGGSCTTC
T ss_pred             HHHhhccCce
Confidence            8765554433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=1.1e-23  Score=225.64  Aligned_cols=255  Identities=16%  Similarity=0.112  Sum_probs=171.6

Q ss_pred             eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      +++++++++++.+|..+.  ++|++|+|++|.+....+ .+.++++|++|+|++|......|..++.+++|++|++++|.
T Consensus        34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  111 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR  111 (562)
T ss_dssp             CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence            467788888887776554  678888888877655444 47778888888888775554456667778888888888766


Q ss_pred             CCcccCCccCCCCCCEEEeeCCCCCc-ccCccccCCCCCcEEEcccCCCCCccccccCCCCCC--CEEeccCCCC--CCC
Q 043408           82 SLTSLSTSIHLESLKTLILSGCSNLM-KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSL--ERLNLSGCSN--LQR  156 (492)
Q Consensus        82 ~l~~lp~~~~l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L--~~L~Ls~c~~--l~~  156 (492)
                       ++.+|.. .+++|++|++++|.... .+|..++++++|++|++++|.....   .+..+++|  ++|++++|..  .+.
T Consensus       112 -l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~  186 (562)
T 3a79_B          112 -LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGG  186 (562)
T ss_dssp             -CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred             -CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccccc
Confidence             6677766 77888888888765333 2346777888888888887765442   22333333  6666666544  222


Q ss_pred             cccccCCcc-----------------------------------------------------------------------
Q 043408          157 LPNELGNLE-----------------------------------------------------------------------  165 (492)
Q Consensus       157 lp~~l~~l~-----------------------------------------------------------------------  165 (492)
                      .|..+..+.                                                                       
T Consensus       187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~  266 (562)
T 3a79_B          187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS  266 (562)
T ss_dssp             SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred             CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence            222222111                                                                       


Q ss_pred             ----------ccccccccccccc-cccccc--------------------------------------------------
Q 043408          166 ----------ALKELKAEGIAIR-EVPSSI--------------------------------------------------  184 (492)
Q Consensus       166 ----------~L~~L~l~~~~i~-~lp~~~--------------------------------------------------  184 (492)
                                +|+.|++++|.+. .+|..+                                                  
T Consensus       267 ~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~  346 (562)
T 3a79_B          267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM  346 (562)
T ss_dssp             HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred             HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc
Confidence                      4445555555444 444332                                                  


Q ss_pred             ---ccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCcccccc---hhhhcCccccccccccccccccCCCC----
Q 043408          185 ---VCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFERIP---ESIICLSHLYWLRISYCERLKSLPEL----  251 (492)
Q Consensus       185 ---~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~~lp---~~l~~l~~L~~L~L~~c~~l~~lp~l----  251 (492)
                         ..+++|+.|+++++.   .+|..++.+++|+.|++++|.++.++   ..+..+++|+.|++++|.....+|..    
T Consensus       347 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~  426 (562)
T 3a79_B          347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW  426 (562)
T ss_dssp             CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred             cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence               566788888888875   36778888999999999999888544   56788899999999998755546642    


Q ss_pred             Ccccceeeccccc
Q 043408          252 PCDLSDIEAHCCS  264 (492)
Q Consensus       252 ~~sL~~L~~~~C~  264 (492)
                      +++|+.|++.++.
T Consensus       427 l~~L~~L~l~~n~  439 (562)
T 3a79_B          427 AESILVLNLSSNM  439 (562)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             cccCCEEECCCCC
Confidence            4678888888775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=2.9e-23  Score=208.39  Aligned_cols=256  Identities=20%  Similarity=0.233  Sum_probs=209.1

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|++++|+++.++. +..+++|++|++++|.+ +.++.+..+++|++|++++|. +..++. +..+++|+.|++++|
T Consensus        67 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n  142 (347)
T 4fmz_A           67 NLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKI-TDISALQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGAN  142 (347)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTC
T ss_pred             CccEEEccCCccccchh-hhcCCcCCEEEccCCcc-cCchHHcCCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCC
Confidence            58999999999999877 88999999999999965 456789999999999999975 445554 889999999999999


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                      ..+..++....+++|++|++++|.. ..++. +..+++|++|++++|.... ++. +..+++|+.|++++|.... ++. 
T Consensus       143 ~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~-  216 (347)
T 4fmz_A          143 HNLSDLSPLSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITD-ITP-  216 (347)
T ss_dssp             TTCCCCGGGTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-
T ss_pred             CCcccccchhhCCCCcEEEecCCCc-CCchh-hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCC-Cch-
Confidence            8788777756999999999999754 44443 8899999999999987554 443 7889999999999975443 333 


Q ss_pred             cCCcccccccccccccccccccccccCCCCcccccCCCcC-CccccCCCCCCcEEecCCCcccccchhhhcCcccccccc
Q 043408          161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKE-LPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRI  239 (492)
Q Consensus       161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L  239 (492)
                      ++.+++|+.|++++|.+..++. +..+++|+.|+++++.- -.+.+..+++|+.|++++|.++.++ .+..+++|+.|++
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L  294 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFL  294 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred             hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEEC
Confidence            7888999999999999998877 88899999999998762 2246788999999999999998885 5888999999999


Q ss_pred             ccccccccCCC---CCcccceeecccccccccc
Q 043408          240 SYCERLKSLPE---LPCDLSDIEAHCCSSLEAL  269 (492)
Q Consensus       240 ~~c~~l~~lp~---l~~sL~~L~~~~C~~L~~l  269 (492)
                      ++|+.....|+   ..++|+.|++.+|. ++.+
T Consensus       295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~  326 (347)
T 4fmz_A          295 NNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI  326 (347)
T ss_dssp             CSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred             cCCcCCCcChhHhhccccCCEEEccCCc-cccc
Confidence            99865444433   25788999998886 4443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=5.5e-23  Score=214.74  Aligned_cols=250  Identities=21%  Similarity=0.220  Sum_probs=184.2

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|++++++++.++ ++..+++|++|+|++|.+.. +| ++.+++|++|++++|. +..++  ++.+++|++|++++|
T Consensus        43 ~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~-~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           43 TLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD-LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTN  116 (457)
T ss_dssp             TCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSS
T ss_pred             CCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec-cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCC
Confidence            5789999999999886 78889999999999997654 44 8899999999999976 44444  888999999999998


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                      . ++.++ ...+++|++|++++|. +..++  ++++++|++|++++|..++.+  .++.+++|++|++++|.. ..+|  
T Consensus       117 ~-l~~l~-~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~~l~--  186 (457)
T 3bz5_A          117 K-LTKLD-VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI-TELD--  186 (457)
T ss_dssp             C-CSCCC-CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC-CCCC--
T ss_pred             c-CCeec-CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc-ceec--
Confidence            6 56665 3488999999999865 44443  788889999999988777766  467888888888888644 4455  


Q ss_pred             cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccch-hhhcCc-----
Q 043408          161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPE-SIICLS-----  232 (492)
Q Consensus       161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~-----  232 (492)
                      ++.+++|+.|++++|.++.++  +..+++|+.|+++++.  .+|  ++.+++|+.|++++|.++.+|. .+..+.     
T Consensus       187 l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~  262 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI  262 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred             cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEecc
Confidence            777888888888888888763  7778888888888775  355  6777888888888888776552 222222     


Q ss_pred             --cccccccccccccccCCCC-Ccccceeeccccccccccc
Q 043408          233 --HLYWLRISYCERLKSLPEL-PCDLSDIEAHCCSSLEALS  270 (492)
Q Consensus       233 --~L~~L~L~~c~~l~~lp~l-~~sL~~L~~~~C~~L~~l~  270 (492)
                        +|+.|++++|+.++.+|.. .++|+.|++.+|..++.++
T Consensus       263 ~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          263 QTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             TCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCCcccccccccCCEEECCCCcccceec
Confidence              3455566666555555432 3556666666665555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=2.5e-23  Score=212.54  Aligned_cols=254  Identities=15%  Similarity=0.120  Sum_probs=200.2

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccccc-ccCCcCCcEEec
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSS-IQYLNKLIVLNL   77 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~s-i~~L~~L~~L~L   77 (492)
                      +|++|+|++++++.++ ..+..+++|++|+|++|.+....|. ++++++|++|+|++|. +..+|.. ++.+++|++|++
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEEC
Confidence            5899999999999887 4789999999999999987766665 8899999999999975 5566665 488999999999


Q ss_pred             cCCCCCcccC-Ccc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCC------------------Ccccccc
Q 043408           78 EHCRSLTSLS-TSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRL------------------EGLPSKI  137 (492)
Q Consensus        78 ~~~~~l~~lp-~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l------------------~~lp~~i  137 (492)
                      ++|. +..++ ..+ .+++|++|++++|.. ..++  ++.+++|+.|++++|...                  ..+|.  
T Consensus       149 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--  222 (390)
T 3o6n_A          149 SNNN-LERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--  222 (390)
T ss_dssp             CSSC-CCBCCTTTTSSCTTCCEEECCSSCC-SBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--
T ss_pred             CCCc-cCccChhhccCCCCCCEEECCCCcC-Cccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccc--
Confidence            9987 44444 334 889999999999654 3332  344555555555444322                  12222  


Q ss_pred             CCCCCCCEEeccCCCCCCCcccccCCccccccccccccccccc-ccccccCCCCcccccCCCc--CCccccCCCCCCcEE
Q 043408          138 CKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRIL  214 (492)
Q Consensus       138 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L  214 (492)
                      ...++|+.|++++|.... . ..++.+++|+.|++++|.+..+ |..+..+++|+.|+++++.  .++..+..+++|+.|
T Consensus       223 ~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L  300 (390)
T 3o6n_A          223 PVNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL  300 (390)
T ss_dssp             CCCSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEE
T ss_pred             cccccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEE
Confidence            234689999999976544 3 5788899999999999999866 6788999999999999986  467777889999999


Q ss_pred             ecCCCcccccchhhhcCccccccccccccccccCC-CCCcccceeeccccc
Q 043408          215 FLDKNNFERIPESIICLSHLYWLRISYCERLKSLP-ELPCDLSDIEAHCCS  264 (492)
Q Consensus       215 ~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~l~~sL~~L~~~~C~  264 (492)
                      +|++|.++.+|..+..+++|+.|++++|+ +..++ ...++|+.|++.+++
T Consensus       301 ~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          301 DLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLTLSHND  350 (390)
T ss_dssp             ECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCCSEEECCSSC
T ss_pred             ECCCCcceecCccccccCcCCEEECCCCc-cceeCchhhccCCEEEcCCCC
Confidence            99999999999999999999999999986 45554 345788888887753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=8.1e-23  Score=218.93  Aligned_cols=264  Identities=18%  Similarity=0.133  Sum_probs=212.0

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      +|++|+|++|+|+.++ ..+..+++|++|+|++|.+....|+ |.++++|++|+|++|. +..+|..  .+++|++|+++
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEECC
Confidence            5899999999999887 6899999999999999987766565 8999999999999975 5578876  89999999999


Q ss_pred             CCCCCcccC--Ccc-CCCCCCEEEeeCCCCCcccCccccCCCCC--cEEEcccCCC--CCccccccCCCC----------
Q 043408           79 HCRSLTSLS--TSI-HLESLKTLILSGCSNLMKLPSSIERLSSL--ILLNLRNCSR--LEGLPSKICKLK----------  141 (492)
Q Consensus        79 ~~~~l~~lp--~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L--~~L~L~~~~~--l~~lp~~i~~l~----------  141 (492)
                      +|. +..++  ..+ ++++|++|++++|....   ..+..+++|  ++|++++|..  .+..|..+..+.          
T Consensus       130 ~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  205 (562)
T 3a79_B          130 FND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP  205 (562)
T ss_dssp             SSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred             CCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence            987 55543  444 89999999999976543   345555666  9999999987  555555444332          


Q ss_pred             -----------------------------------------------------------------------CCCEEeccC
Q 043408          142 -----------------------------------------------------------------------SLERLNLSG  150 (492)
Q Consensus       142 -----------------------------------------------------------------------~L~~L~Ls~  150 (492)
                                                                                             +|++|++++
T Consensus       206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~  285 (562)
T 3a79_B          206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN  285 (562)
T ss_dssp             SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred             ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence                                                                                   666777776


Q ss_pred             CCCCCCccccc-----------------------------------------------------CCcccccccccccccc
Q 043408          151 CSNLQRLPNEL-----------------------------------------------------GNLEALKELKAEGIAI  177 (492)
Q Consensus       151 c~~l~~lp~~l-----------------------------------------------------~~l~~L~~L~l~~~~i  177 (492)
                      |...+.+|..+                                                     +.+++|+.|++++|.+
T Consensus       286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l  365 (562)
T 3a79_B          286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF  365 (562)
T ss_dssp             EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred             cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence            65555666544                                                     6778999999999999


Q ss_pred             cc-cccccccCCCCcccccCCCc--C---CccccCCCCCCcEEecCCCcccc-cch-hhhcCccccccccccccccccCC
Q 043408          178 RE-VPSSIVCLKNLGRLSFESFK--E---LPECLGQLSSLRILFLDKNNFER-IPE-SIICLSHLYWLRISYCERLKSLP  249 (492)
Q Consensus       178 ~~-lp~~~~~l~~L~~L~l~~~~--~---lp~~l~~l~~L~~L~L~~n~l~~-lp~-~l~~l~~L~~L~L~~c~~l~~lp  249 (492)
                      .. +|..+..+++|+.|+++++.  .   +|..++.+++|+.|++++|.++. +|. .+..+++|+.|++++|..-..+|
T Consensus       366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  445 (562)
T 3a79_B          366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF  445 (562)
T ss_dssp             CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred             ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence            86 77889999999999999986  2   34568999999999999999986 876 47789999999999998666666


Q ss_pred             CCC-cccceeeccccccccccccc
Q 043408          250 ELP-CDLSDIEAHCCSSLEALSGL  272 (492)
Q Consensus       250 ~l~-~sL~~L~~~~C~~L~~l~~~  272 (492)
                      ... ++|+.|++.++ .++.++..
T Consensus       446 ~~l~~~L~~L~L~~N-~l~~ip~~  468 (562)
T 3a79_B          446 RCLPPKVKVLDLHNN-RIMSIPKD  468 (562)
T ss_dssp             SSCCTTCSEEECCSS-CCCCCCTT
T ss_pred             hhhcCcCCEEECCCC-cCcccChh
Confidence            544 69999999987 67766653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=2.9e-24  Score=216.65  Aligned_cols=254  Identities=20%  Similarity=0.179  Sum_probs=136.5

Q ss_pred             EEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCC
Q 043408            5 LEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSL   83 (492)
Q Consensus         5 L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l   83 (492)
                      .++++++++.+|.++.  ++|++|++++|.+....+ .+.++++|++|+|++|......+..++.+++|++|++++|. +
T Consensus        36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l  112 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-L  112 (353)
T ss_dssp             EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred             eeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-C
Confidence            4555666666665443  366666666665443333 25666666666666654333334456666666666666654 4


Q ss_pred             cccCCc-c-CCCCCCEEEeeCCCCCcccCc--cccCCCCCcEEEcccCCCCCcc-ccccCCCCCCCEEeccCCCCCCCcc
Q 043408           84 TSLSTS-I-HLESLKTLILSGCSNLMKLPS--SIERLSSLILLNLRNCSRLEGL-PSKICKLKSLERLNLSGCSNLQRLP  158 (492)
Q Consensus        84 ~~lp~~-~-~l~~L~~L~L~~c~~l~~lp~--~i~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp  158 (492)
                      +.++.. + ++++|++|++++| .+..+|.  .+.++++|++|++++|..++.+ +..+..+++|++|++++|...+..|
T Consensus       113 ~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          113 SNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             SSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence            444443 2 5666666666664 3334444  4566666666666666433333 3455666666666666655444445


Q ss_pred             cccCCccccccccccccccccccccc-ccCCCCcccccCCCcC--Cc-c---ccCCCCCCcEEecCCCccc-----ccch
Q 043408          159 NELGNLEALKELKAEGIAIREVPSSI-VCLKNLGRLSFESFKE--LP-E---CLGQLSSLRILFLDKNNFE-----RIPE  226 (492)
Q Consensus       159 ~~l~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~--lp-~---~l~~l~~L~~L~L~~n~l~-----~lp~  226 (492)
                      ..++.+++|++|++++|.+..+|..+ ..+++|+.|+++++.-  ++ .   .....+.++.++|+++.+.     .+|.
T Consensus       192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~  271 (353)
T 2z80_A          192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK  271 (353)
T ss_dssp             TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred             HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence            56666666666666666666555443 2356666666665541  11 0   1122344555555555443     3555


Q ss_pred             hhhcCccccccccccccccccCCCC----Ccccceeecccc
Q 043408          227 SIICLSHLYWLRISYCERLKSLPEL----PCDLSDIEAHCC  263 (492)
Q Consensus       227 ~l~~l~~L~~L~L~~c~~l~~lp~l----~~sL~~L~~~~C  263 (492)
                      .+..+++|+.|++++|. ++.+|..    .++|++|++.++
T Consensus       272 ~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          272 LLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             HHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             HHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCC
Confidence            55666666666666643 3455532    245555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=8e-23  Score=204.07  Aligned_cols=237  Identities=18%  Similarity=0.205  Sum_probs=198.1

Q ss_pred             CceEEEccCCCcccccc-cccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            1 NLVSLEMPHSSIKQLWK-GVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      +|++|+|++|+|+.++. .+..+++|++|+|++|.+....|. +..+++|++|+|++|. +..+|..+.  ++|+.|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEECC
Confidence            47899999999999875 689999999999999988766564 9999999999999965 557777665  799999999


Q ss_pred             CCCCCcccCCc-c-CCCCCCEEEeeCCCCCc--ccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408           79 HCRSLTSLSTS-I-HLESLKTLILSGCSNLM--KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL  154 (492)
Q Consensus        79 ~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l  154 (492)
                      +|. +..++.. + ++++|++|++++|....  ..+..+.++++|++|++++|... .+|..+.  ++|++|++++|...
T Consensus       130 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~  205 (330)
T 1xku_A          130 ENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT  205 (330)
T ss_dssp             SSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCC
T ss_pred             CCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCC
Confidence            986 5555543 2 89999999999976543  45677999999999999998754 4666554  89999999998766


Q ss_pred             CCcccccCCccccccccccccccccccc-ccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhh--
Q 043408          155 QRLPNELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESII--  229 (492)
Q Consensus       155 ~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~--  229 (492)
                      +..|..++.+++|+.|++++|.+..++. .+..+++|+.|++++|.  .+|..+..+++|+.|++++|+++.++....  
T Consensus       206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~  285 (330)
T 1xku_A          206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  285 (330)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence            6667889999999999999999997765 68899999999999986  688899999999999999999998775322  


Q ss_pred             -----cCccccccccccccc
Q 043408          230 -----CLSHLYWLRISYCER  244 (492)
Q Consensus       230 -----~l~~L~~L~L~~c~~  244 (492)
                           ....|+.|++++|+.
T Consensus       286 ~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          286 PGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             SSCCTTSCCCSEEECCSSSS
T ss_pred             cccccccccccceEeecCcc
Confidence                 246788889988764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=4e-23  Score=206.47  Aligned_cols=237  Identities=18%  Similarity=0.237  Sum_probs=197.7

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      +|++|+|++|+++.++ ..+..+++|++|+|++|.+....|. +.++++|++|+|++|. +..+|..+.  ++|++|+++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEECC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEECC
Confidence            4789999999999886 5789999999999999987665554 8999999999999964 557777665  899999999


Q ss_pred             CCCCCcccCCc-c-CCCCCCEEEeeCCCCC--cccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408           79 HCRSLTSLSTS-I-HLESLKTLILSGCSNL--MKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL  154 (492)
Q Consensus        79 ~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l--~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l  154 (492)
                      +|. +..++.. + ++++|++|++++|...  ...+..+..+ +|++|++++|... .+|..+.  ++|++|++++|...
T Consensus       132 ~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          132 DNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQ  206 (332)
T ss_dssp             SSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCC
T ss_pred             CCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCC
Confidence            987 6666654 3 8999999999997653  2456677777 9999999998754 4666554  78999999998776


Q ss_pred             CCcccccCCccccccccccccccccccc-ccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccch-hhhc
Q 043408          155 QRLPNELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPE-SIIC  230 (492)
Q Consensus       155 ~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~  230 (492)
                      +..+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.  .+|..+..+++|+.|++++|.++.++. .+..
T Consensus       207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence            6666889999999999999999998775 68899999999999886  688889999999999999999998764 3322


Q ss_pred             ------Ccccccccccccccc
Q 043408          231 ------LSHLYWLRISYCERL  245 (492)
Q Consensus       231 ------l~~L~~L~L~~c~~l  245 (492)
                            ...|+.|++++|+..
T Consensus       287 ~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          287 VGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             SSCCSSSCCBSEEECCSSSSC
T ss_pred             cccccccccccceEeecCccc
Confidence                  467899999998743

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=3.5e-23  Score=221.41  Aligned_cols=261  Identities=19%  Similarity=0.182  Sum_probs=179.1

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      ++++|+|++|+++.++ ..+..+++|++|+|++|.+....++ |+++++|++|+|++|......+..++.+++|++|+++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            4789999999999886 5788999999999999986654454 8899999999999987555555788999999999999


Q ss_pred             CCCCCcccCC--ccCCCCCCEEEeeCCCCCc-ccCccccCCCCCcEEEcccCCCCCccccccCCCCCC----CEEeccCC
Q 043408           79 HCRSLTSLST--SIHLESLKTLILSGCSNLM-KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSL----ERLNLSGC  151 (492)
Q Consensus        79 ~~~~l~~lp~--~~~l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L----~~L~Ls~c  151 (492)
                      +|. +..++.  ..++++|++|++++|.... .+|..++++++|++|++++|...+..+..++.+++|    +.|++++|
T Consensus       109 ~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          109 ETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             ccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            976 666655  2389999999999976544 478889999999999999987665555545444444    44554443


Q ss_pred             CCC-----------------------------------------------------------------------------
Q 043408          152 SNL-----------------------------------------------------------------------------  154 (492)
Q Consensus       152 ~~l-----------------------------------------------------------------------------  154 (492)
                      ...                                                                             
T Consensus       188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  267 (570)
T 2z63_A          188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  267 (570)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred             CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence            221                                                                             


Q ss_pred             ----CCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCcc--------------------ccCCC
Q 043408          155 ----QRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPE--------------------CLGQL  208 (492)
Q Consensus       155 ----~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~--------------------~l~~l  208 (492)
                          +.+|..++.+++|+.|+++++.+..+|..+..+ +|+.|++.++.  .+|.                    ....+
T Consensus       268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~  346 (570)
T 2z63_A          268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL  346 (570)
T ss_dssp             TEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred             hhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence                112233444566666666666666666655555 55555554443  1111                    11566


Q ss_pred             CCCcEEecCCCccccc---chhhhcCccccccccccccccccCCC---CCcccceeeccccc
Q 043408          209 SSLRILFLDKNNFERI---PESIICLSHLYWLRISYCERLKSLPE---LPCDLSDIEAHCCS  264 (492)
Q Consensus       209 ~~L~~L~L~~n~l~~l---p~~l~~l~~L~~L~L~~c~~l~~lp~---l~~sL~~L~~~~C~  264 (492)
                      ++|+.|++++|.++.+   |..+..+++|+.|++++|.. ..+|.   ..++|+.|++.+|.
T Consensus       347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~l~~n~  407 (570)
T 2z63_A          347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSN  407 (570)
T ss_dssp             TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE-EEEEEEEETCTTCCEEECTTSE
T ss_pred             CCCCEEeCcCCccCccccccccccccCccCEEECCCCcc-ccccccccccCCCCEEEccCCc
Confidence            7777888887777644   56777777788888777653 22322   23566666666653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=5.4e-23  Score=222.02  Aligned_cols=255  Identities=15%  Similarity=0.097  Sum_probs=201.3

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccccc-ccCCcCCcEEec
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSS-IQYLNKLIVLNL   77 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~s-i~~L~~L~~L~L   77 (492)
                      +|++|+|++|+|+.++ ..+..+++|++|+|++|.+....|. ++++++|++|+|++|. +..+|.. ++.+++|++|+|
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEe
Confidence            5889999999999887 4889999999999999987766665 7999999999999975 4466655 589999999999


Q ss_pred             cCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCC------------------CccccccC
Q 043408           78 EHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRL------------------EGLPSKIC  138 (492)
Q Consensus        78 ~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l------------------~~lp~~i~  138 (492)
                      ++|......|..+ .+++|++|++++|.. ..++  ++.+++|+.|++++|...                  ..++..  
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--  229 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--  229 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc--
Confidence            9987433344334 899999999999753 3332  344555555555544332                  122222  


Q ss_pred             CCCCCCEEeccCCCCCCCcccccCCccccccccccccccccc-ccccccCCCCcccccCCCc--CCccccCCCCCCcEEe
Q 043408          139 KLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILF  215 (492)
Q Consensus       139 ~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~  215 (492)
                      ..++|+.|+|++|...+  +..++.+++|+.|++++|.+..+ |..+..+++|+.|++++|.  .+|..+..+++|+.|+
T Consensus       230 ~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~  307 (597)
T 3oja_B          230 VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD  307 (597)
T ss_dssp             CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEE
T ss_pred             cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEE
Confidence            23689999999986654  36788999999999999999865 6789999999999999986  4777788899999999


Q ss_pred             cCCCcccccchhhhcCccccccccccccccccCC-CCCcccceeeccccc
Q 043408          216 LDKNNFERIPESIICLSHLYWLRISYCERLKSLP-ELPCDLSDIEAHCCS  264 (492)
Q Consensus       216 L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~l~~sL~~L~~~~C~  264 (492)
                      |++|.++.+|..+..+++|+.|+|++|+. ..+| ...++|+.|++.+++
T Consensus       308 Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          308 LSHNHLLHVERNQPQFDRLENLYLDHNSI-VTLKLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CCSSCCCCCGGGHHHHTTCSEEECCSSCC-CCCCCCTTCCCSEEECCSSC
T ss_pred             CCCCCCCccCcccccCCCCCEEECCCCCC-CCcChhhcCCCCEEEeeCCC
Confidence            99999999999999999999999999874 4443 346788889888764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=2.7e-22  Score=209.99  Aligned_cols=253  Identities=20%  Similarity=0.303  Sum_probs=189.6

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|+|++|+++.++. +..+++|++|++++|.+....+ ++++++|++|+|++|. +..++. +..+++|++|++++|
T Consensus        69 ~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n  144 (466)
T 1o6v_A           69 NLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSN  144 (466)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEE
T ss_pred             CCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCC
Confidence            57888888888888776 7788888888888877654433 7788888888888764 444443 677777777777776


Q ss_pred             CCCccc---------------------CCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCC
Q 043408           81 RSLTSL---------------------STSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICK  139 (492)
Q Consensus        81 ~~l~~l---------------------p~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~  139 (492)
                      . +..+                     +...++++|++|++++|. +..+ ..+..+++|++|++++|...+..|  ++.
T Consensus       145 ~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~  219 (466)
T 1o6v_A          145 T-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP--LGI  219 (466)
T ss_dssp             E-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG--GGG
T ss_pred             c-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCC-hhhccCCCCCEEEecCCccccccc--ccc
Confidence            4 2222                     222367888999998865 4444 348889999999999987766544  677


Q ss_pred             CCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecC
Q 043408          140 LKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLD  217 (492)
Q Consensus       140 l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~  217 (492)
                      +++|+.|++++|.. ..++ .+..+++|+.|++++|.+..++. +..+++|+.|+++++.  .++. +..+++|+.|+++
T Consensus       220 l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~  295 (466)
T 1o6v_A          220 LTNLDELSLNGNQL-KDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELN  295 (466)
T ss_dssp             CTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred             cCCCCEEECCCCCc-ccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcC
Confidence            89999999999754 3443 57788899999999999988776 8888999999998876  3444 7888999999999


Q ss_pred             CCcccccchhhhcCccccccccccccccccCCC--CCcccceeecccccccccc
Q 043408          218 KNNFERIPESIICLSHLYWLRISYCERLKSLPE--LPCDLSDIEAHCCSSLEAL  269 (492)
Q Consensus       218 ~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~--l~~sL~~L~~~~C~~L~~l  269 (492)
                      +|.++.++. +..+++|+.|++++|+ +..++.  ..++|+.|++.+| .+..+
T Consensus       296 ~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~  346 (466)
T 1o6v_A          296 ENQLEDISP-ISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNN-KVSDV  346 (466)
T ss_dssp             SSCCSCCGG-GGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred             CCcccCchh-hcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCC-ccCCc
Confidence            999887775 7888999999999985 444433  2568888888887 34444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=1.1e-22  Score=198.76  Aligned_cols=217  Identities=22%  Similarity=0.224  Sum_probs=143.5

Q ss_pred             eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      ++++.++++++.+|.++  .++|++|+|++|.+....+. +..+++|++|+|++|......+..+..+++|++|++++|.
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            46778888888887654  46888888888876554443 7888888888888875554446677888888888888876


Q ss_pred             CCccc-CCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcc-
Q 043408           82 SLTSL-STSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP-  158 (492)
Q Consensus        82 ~l~~l-p~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-  158 (492)
                      .+..+ +..+ .+++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++|... .++ 
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~  170 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPE  170 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECT
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCH
Confidence            56665 3333 6778888888876554444566777788888888877665555555777777777777776433 343 


Q ss_pred             cccCCccccccccccccccccc-ccccccCCCCcccccCCCc--CCc-cccCCCCCCcEEecCCCccc
Q 043408          159 NELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--ELP-ECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       159 ~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~lp-~~l~~l~~L~~L~L~~n~l~  222 (492)
                      ..+..+++|+.|++++|.+..+ |..+..+++|+.|+++++.  .++ ..+..+++|+.|++++|.+.
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            3467777777777777777655 4445555555555555443  122 22444555555555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=4.5e-23  Score=203.56  Aligned_cols=237  Identities=19%  Similarity=0.215  Sum_probs=171.8

Q ss_pred             eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccC--ccccccccCCcCCcEEeccC
Q 043408            3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSL--LETHSSIQYLNKLIVLNLEH   79 (492)
Q Consensus         3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l--~~~~~si~~L~~L~~L~L~~   79 (492)
                      +.++.++++++.+|.++.  ++|++|+|++|.+....+. +.++++|++|+|++|...  ...+..+..+++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            467888889999987654  6899999999886543333 788999999999987543  22356677789999999998


Q ss_pred             CCCCcccCCcc-CCCCCCEEEeeCCCCCcccC--ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCC-
Q 043408           80 CRSLTSLSTSI-HLESLKTLILSGCSNLMKLP--SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ-  155 (492)
Q Consensus        80 ~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~-  155 (492)
                      |. +..++..+ .+++|++|++++|. +..++  ..+..+++|++|++++|...+..+..+..+++|++|++++|...+ 
T Consensus        88 n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           88 NG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             CS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             Cc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            76 55666545 88899999998864 34444  467888889999998888777777778888888888888876554 


Q ss_pred             CcccccCCccccccccccccccccc-ccccccCCCCcccccCCCc--CCc-cccCCCCCCcEEecCCCcccc-cchhhhc
Q 043408          156 RLPNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--ELP-ECLGQLSSLRILFLDKNNFER-IPESIIC  230 (492)
Q Consensus       156 ~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~lp-~~l~~l~~L~~L~L~~n~l~~-lp~~l~~  230 (492)
                      .+|..++.+++|+.|++++|.++.+ |..+..+++|+.|+++++.  .++ ..+..+++|+.|+|++|.++. .|..+..
T Consensus       166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  245 (306)
T 2z66_A          166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH  245 (306)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred             cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence            4677788888888888888888866 4556666667666666654  222 245666666667776666653 3445555


Q ss_pred             C-cccccccccccc
Q 043408          231 L-SHLYWLRISYCE  243 (492)
Q Consensus       231 l-~~L~~L~L~~c~  243 (492)
                      + ++|+.|++++|+
T Consensus       246 ~~~~L~~L~L~~N~  259 (306)
T 2z66_A          246 FPSSLAFLNLTQND  259 (306)
T ss_dssp             CCTTCCEEECTTCC
T ss_pred             hhccCCEEEccCCC
Confidence            5 366666666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=2.4e-22  Score=208.86  Aligned_cols=235  Identities=25%  Similarity=0.305  Sum_probs=182.6

Q ss_pred             eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      ..++..+.+++.+|.++.  ++++.|+|++|.+....+ .|.++++|++|+|++|......+..+..+++|++|+|++|.
T Consensus        46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            466777888888887665  688999999988665544 48889999999999876555555678889999999999875


Q ss_pred             CCcccCCc-c-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCcccc-ccCCCCCCCEEeccCCCCCCCc
Q 043408           82 SLTSLSTS-I-HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPS-KICKLKSLERLNLSGCSNLQRL  157 (492)
Q Consensus        82 ~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~l  157 (492)
                       ++.++.. + .+++|++|++++|. +..++ ..+.++++|++|++++|..+..++. .+.++++|++|++++| .+..+
T Consensus       124 -l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~  200 (440)
T 3zyj_A          124 -LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREI  200 (440)
T ss_dssp             -CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSC
T ss_pred             -CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccc
Confidence             6666653 3 78899999999865 44444 4688889999999998877777665 5778889999999886 44566


Q ss_pred             ccccCCccccccccccccccccc-ccccccCCCCcccccCCCcC---CccccCCCCCCcEEecCCCcccccch-hhhcCc
Q 043408          158 PNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRILFLDKNNFERIPE-SIICLS  232 (492)
Q Consensus       158 p~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~  232 (492)
                      | .+..+++|+.|++++|.+..+ |..+..+++|+.|++.++.-   .+..+..+++|+.|+|++|+++.+|. .+..++
T Consensus       201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence            6 477888899999999988866 56778888888888888762   35567888888888888888887764 456788


Q ss_pred             ccccccccccc
Q 043408          233 HLYWLRISYCE  243 (492)
Q Consensus       233 ~L~~L~L~~c~  243 (492)
                      +|+.|+|++|+
T Consensus       280 ~L~~L~L~~Np  290 (440)
T 3zyj_A          280 HLERIHLHHNP  290 (440)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEcCCCC
Confidence            88888888875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.89  E-value=8.9e-23  Score=217.52  Aligned_cols=130  Identities=25%  Similarity=0.285  Sum_probs=83.7

Q ss_pred             CCCCCCEEeccCCCCCCCccc---ccCCccccccccccccccccccc---ccccCCCCcccccCCCc--CCccccCCCCC
Q 043408          139 KLKSLERLNLSGCSNLQRLPN---ELGNLEALKELKAEGIAIREVPS---SIVCLKNLGRLSFESFK--ELPECLGQLSS  210 (492)
Q Consensus       139 ~l~~L~~L~Ls~c~~l~~lp~---~l~~l~~L~~L~l~~~~i~~lp~---~~~~l~~L~~L~l~~~~--~lp~~l~~l~~  210 (492)
                      ++++|++|++++|...+.+|.   .++.+++|+.|++++|.++.++.   .+..+++|+.|++++|.  .+|..++.+++
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~  411 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK  411 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence            466677777777655544432   25566667777777776665542   35666666666666654  45656666666


Q ss_pred             CcEEecCCCcccccchhh------------------hcCccccccccccccccccCCCC--Ccccceeeccccccccccc
Q 043408          211 LRILFLDKNNFERIPESI------------------ICLSHLYWLRISYCERLKSLPEL--PCDLSDIEAHCCSSLEALS  270 (492)
Q Consensus       211 L~~L~L~~n~l~~lp~~l------------------~~l~~L~~L~L~~c~~l~~lp~l--~~sL~~L~~~~C~~L~~l~  270 (492)
                      |+.|++++|.++.+|..+                  ..+++|+.|++++| .++.+|..  .++|+.|++.++ .++.++
T Consensus       412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~  489 (549)
T 2z81_A          412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN-QLKSVP  489 (549)
T ss_dssp             CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCC
T ss_pred             ccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC-ccCCcC
Confidence            666666666655444332                  36788999999997 46688864  578999999886 455443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=1.2e-23  Score=209.00  Aligned_cols=236  Identities=15%  Similarity=0.116  Sum_probs=124.9

Q ss_pred             ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      |++|+|++|+++.++ ..+..+++|++|+|++|.+.... .+..+++|++|+|++|. +..++    ..++|++|++++|
T Consensus        36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n  109 (317)
T 3o53_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNY-VQELL----VGPSIETLHAANN  109 (317)
T ss_dssp             CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEECCSSE-EEEEE----ECTTCCEEECCSS
T ss_pred             CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEECcCCc-ccccc----CCCCcCEEECCCC
Confidence            455555555555443 34555555555555555443222 25555555555555543 22222    2355555555554


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCcccccc-CCCCCCCEEeccCCCCCCCccc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKI-CKLKSLERLNLSGCSNLQRLPN  159 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~Ls~c~~l~~lp~  159 (492)
                      . +..++. ..+++|++|++++|......+..++.+++|++|++++|...+..+..+ ..+++|++|++++|. +..++.
T Consensus       110 ~-l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~  186 (317)
T 3o53_A          110 N-ISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG  186 (317)
T ss_dssp             C-CSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC
T ss_pred             c-cCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc
Confidence            4 333322 134556666666644333333455556666666666655554444443 245666666666643 223322


Q ss_pred             ccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCccc--ccchhhhcCcccc
Q 043408          160 ELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFE--RIPESIICLSHLY  235 (492)
Q Consensus       160 ~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~  235 (492)
                       ...+++|+.|++++|.+..+|..+..+++|+.|++++|.  .+|..+..+++|+.|++++|.++  .+|..+..+++|+
T Consensus       187 -~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~  265 (317)
T 3o53_A          187 -QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (317)
T ss_dssp             -CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred             -ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence             223556666666666666665556666666666666554  35555556666666666666655  4555566666666


Q ss_pred             cccccccccccc
Q 043408          236 WLRISYCERLKS  247 (492)
Q Consensus       236 ~L~L~~c~~l~~  247 (492)
                      .|++++|+.++.
T Consensus       266 ~l~l~~~~~l~~  277 (317)
T 3o53_A          266 TVAKQTVKKLTG  277 (317)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             EEECCCchhccC
Confidence            666665555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=3.2e-23  Score=204.62  Aligned_cols=220  Identities=25%  Similarity=0.298  Sum_probs=187.5

Q ss_pred             CceEEEccCCCccccccc-ccCCCCCcEEEccCCCCCCC---CCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEe
Q 043408            1 NLVSLEMPHSSIKQLWKG-VQRLVNLKHLNLSHSEHLTK---IPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLN   76 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~---~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~   76 (492)
                      +|++|+|++|+++.++.+ +..+++|++|+|++|.+...   ...+..+++|++|+|++|. +..++..+..+++|++|+
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEE
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEE
Confidence            588999999999999865 68999999999999976532   1336678999999999975 556888899999999999


Q ss_pred             ccCCCCCcccCC--cc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCC-ccccccCCCCCCCEEeccCCC
Q 043408           77 LEHCRSLTSLST--SI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLE-GLPSKICKLKSLERLNLSGCS  152 (492)
Q Consensus        77 L~~~~~l~~lp~--~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~c~  152 (492)
                      +++|. +..++.  .+ .+++|++|++++|......+..+..+++|++|++++|...+ .+|..+..+++|++|++++|.
T Consensus       108 l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          108 FQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             CTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             CCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            99986 555543  23 89999999999987666667779999999999999998766 578889999999999999987


Q ss_pred             CCCCcccccCCccccccccccccccccccc-ccccCCCCcccccCCCc---CCccccCCCC-CCcEEecCCCccc
Q 043408          153 NLQRLPNELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFK---ELPECLGQLS-SLRILFLDKNNFE  222 (492)
Q Consensus       153 ~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~---~lp~~l~~l~-~L~~L~L~~n~l~  222 (492)
                      ..+..|..++.+++|+.|++++|.+..++. .+..+++|+.|++++|.   ..+..+..++ +|+.|+|++|.++
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            666667889999999999999999998766 67889999999999987   3566778874 9999999999987

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=2.7e-22  Score=209.12  Aligned_cols=235  Identities=25%  Similarity=0.301  Sum_probs=178.4

Q ss_pred             eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      ..++..+.+++.+|.++.  ++|++|+|++|.+....++ |.++++|++|+|++|......+..+..+++|++|+|++|.
T Consensus        57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            456777778888886654  6888899988877655444 8888889999998876555555678888889999988876


Q ss_pred             CCcccCCc-c-CCCCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCcccc-ccCCCCCCCEEeccCCCCCCCc
Q 043408           82 SLTSLSTS-I-HLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPS-KICKLKSLERLNLSGCSNLQRL  157 (492)
Q Consensus        82 ~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~l  157 (492)
                       +..++.. + .+++|++|++++|. +..++. .+.++++|++|++++|..++.++. .+..+++|++|++++|. +..+
T Consensus       135 -l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~  211 (452)
T 3zyi_A          135 -LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDM  211 (452)
T ss_dssp             -CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSC
T ss_pred             -CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccc
Confidence             6666654 3 68888888888865 444444 678888888888888777777665 47788888888888864 4445


Q ss_pred             ccccCCccccccccccccccccc-ccccccCCCCcccccCCCcC---CccccCCCCCCcEEecCCCcccccch-hhhcCc
Q 043408          158 PNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRILFLDKNNFERIPE-SIICLS  232 (492)
Q Consensus       158 p~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~  232 (492)
                      | .+..+++|+.|++++|.+..+ |..+..+++|+.|++.++.-   .+..+..+++|+.|+|++|+++.+|. .+..++
T Consensus       212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence            5 477788888888888888866 55678888888888887762   35567788888888888888887764 456788


Q ss_pred             ccccccccccc
Q 043408          233 HLYWLRISYCE  243 (492)
Q Consensus       233 ~L~~L~L~~c~  243 (492)
                      +|+.|+|++|+
T Consensus       291 ~L~~L~L~~Np  301 (452)
T 3zyi_A          291 YLVELHLHHNP  301 (452)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEccCCC
Confidence            88888888875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=4.3e-22  Score=208.41  Aligned_cols=249  Identities=23%  Similarity=0.310  Sum_probs=171.1

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|+.|++.+++++.++ ++..+++|++|+|++|.+.. ++.+..+++|++|++++|... .++. ++.+++|++|++++|
T Consensus        47 ~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n  122 (466)
T 1o6v_A           47 QVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFNN  122 (466)
T ss_dssp             TCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS
T ss_pred             cccEEecCCCCCccCc-chhhhcCCCEEECCCCccCC-chhhhccccCCEEECCCCccc-cChh-hcCCCCCCEEECCCC
Confidence            4789999999999987 57889999999999998654 444999999999999997544 4444 899999999999998


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCc--------------------cccCCCCCcEEEcccCCCCCccccccCCC
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPS--------------------SIERLSSLILLNLRNCSRLEGLPSKICKL  140 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~--------------------~i~~l~~L~~L~L~~~~~l~~lp~~i~~l  140 (492)
                      . +..++...++++|++|++++|.. ..++.                    .+.++++|++|++++|.... ++ .+..+
T Consensus       123 ~-l~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l  198 (466)
T 1o6v_A          123 Q-ITDIDPLKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-IS-VLAKL  198 (466)
T ss_dssp             C-CCCCGGGTTCTTCSEEEEEEEEE-CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGGGC
T ss_pred             C-CCCChHHcCCCCCCEEECCCCcc-CCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-Ch-hhccC
Confidence            6 67777655899999999998753 33321                    14445555555555554322 22 24555


Q ss_pred             CCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCC
Q 043408          141 KSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDK  218 (492)
Q Consensus       141 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~  218 (492)
                      ++|++|++++|...+..|  ++.+++|+.|++++|.+..++ .+..+++|+.|++++|.  .++. +..+++|+.|++++
T Consensus       199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~  274 (466)
T 1o6v_A          199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGA  274 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred             CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCC
Confidence            666666666654333222  455666666666666666553 35666677777776665  2322 66777777777777


Q ss_pred             CcccccchhhhcCccccccccccccccccCCCC--Ccccceeecccc
Q 043408          219 NNFERIPESIICLSHLYWLRISYCERLKSLPEL--PCDLSDIEAHCC  263 (492)
Q Consensus       219 n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~~sL~~L~~~~C  263 (492)
                      |.++.++. +..+++|+.|++++|. +..++.+  .++|+.|++.+|
T Consensus       275 n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n  319 (466)
T 1o6v_A          275 NQISNISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFN  319 (466)
T ss_dssp             SCCCCCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSS
T ss_pred             CccCcccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCC
Confidence            77776665 6677777777777764 3444432  456777777776

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=3.1e-22  Score=224.56  Aligned_cols=262  Identities=18%  Similarity=0.170  Sum_probs=190.5

Q ss_pred             CceEEEccCCCcccc-cccccCCCCCcEEEccCCCCCCCC-C-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEec
Q 043408            1 NLVSLEMPHSSIKQL-WKGVQRLVNLKHLNLSHSEHLTKI-P-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNL   77 (492)
Q Consensus         1 nL~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~-p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L   77 (492)
                      +|++|+|++|+|+.+ +..+..+++|++|+|++|.....+ | .|+++++|++|+|++|......|..++.+++|++|+|
T Consensus        25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  104 (844)
T 3j0a_A           25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL  104 (844)
T ss_dssp             TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEEC
T ss_pred             CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeC
Confidence            578999999999987 478899999999999999766665 3 3899999999999998877777889999999999999


Q ss_pred             cCCCCCcccCCc--c-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCC--CC---------
Q 043408           78 EHCRSLTSLSTS--I-HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKL--KS---------  142 (492)
Q Consensus        78 ~~~~~l~~lp~~--~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l--~~---------  142 (492)
                      ++|.....++..  + ++++|++|++++|......+ ..++++++|++|+|++|...+..+..+..+  ++         
T Consensus       105 s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n  184 (844)
T 3j0a_A          105 YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN  184 (844)
T ss_dssp             TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred             cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence            998754445543  3 89999999999976555433 578999999999999988766555544433  33         


Q ss_pred             ---------------------CCEEeccCCCCCCCcccccC------------------------------------C--
Q 043408          143 ---------------------LERLNLSGCSNLQRLPNELG------------------------------------N--  163 (492)
Q Consensus       143 ---------------------L~~L~Ls~c~~l~~lp~~l~------------------------------------~--  163 (492)
                                           |+.|++++|......+..+.                                    .  
T Consensus       185 ~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~  264 (844)
T 3j0a_A          185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA  264 (844)
T ss_dssp             BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred             ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence                                 55555555533222221111                                    0  


Q ss_pred             ccccccccccccccccc-ccccccCCCCcccccCCCcC---CccccCCCCCCcEEecCCCccccc-chhhhcCccccccc
Q 043408          164 LEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRILFLDKNNFERI-PESIICLSHLYWLR  238 (492)
Q Consensus       164 l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~  238 (492)
                      .++|+.|++++|.+..+ |..+..+++|+.|+++++.-   .+..+..+++|+.|+|++|.++.+ |..+..+++|+.|+
T Consensus       265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred             cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence            14566666666666644 34566777777777777652   355677888888888888887755 56777888888888


Q ss_pred             cccccccccCCCC----Ccccceeecccc
Q 043408          239 ISYCERLKSLPEL----PCDLSDIEAHCC  263 (492)
Q Consensus       239 L~~c~~l~~lp~l----~~sL~~L~~~~C  263 (492)
                      +++|. +..++..    .++|+.|++.++
T Consensus       345 L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          345 LQKNH-IAIIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             CCSCC-CCCCCSSCSCSCCCCCEEEEETC
T ss_pred             CCCCC-CCccChhhhcCCCCCCEEECCCC
Confidence            88874 5555531    467888888775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=7.5e-22  Score=215.96  Aligned_cols=221  Identities=22%  Similarity=0.195  Sum_probs=111.1

Q ss_pred             ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCc-----cccc----cccCCc
Q 043408            2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLL-----ETHS----SIQYLN   70 (492)
Q Consensus         2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~-----~~~~----si~~L~   70 (492)
                      |++|+|++|+++.++ ..+..+++|++|+|++|.+....|. +.++++|++|++++|....     .+|.    .+..++
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~  329 (680)
T 1ziw_A          250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK  329 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred             CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence            677777777777554 4566677777777777765544332 4555555555554432111     1111    333444


Q ss_pred             CCcEEeccCCCCCcccCCcc-CCCC----------------------------CCEEEeeCCCCCcccCccccCCCCCcE
Q 043408           71 KLIVLNLEHCRSLTSLSTSI-HLES----------------------------LKTLILSGCSNLMKLPSSIERLSSLIL  121 (492)
Q Consensus        71 ~L~~L~L~~~~~l~~lp~~~-~l~~----------------------------L~~L~L~~c~~l~~lp~~i~~l~~L~~  121 (492)
                      +|++|++++|......+..+ ++++                            |+.|++++|......|..+..+++|++
T Consensus       330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  409 (680)
T 1ziw_A          330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV  409 (680)
T ss_dssp             TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence            45555544443211111111 3333                            444444443333334556677777777


Q ss_pred             EEcccCCCCCccc-cccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccc---ccccccccCCCCcccccCC
Q 043408          122 LNLRNCSRLEGLP-SKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR---EVPSSIVCLKNLGRLSFES  197 (492)
Q Consensus       122 L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~  197 (492)
                      |++++|...+.+| ..+..+++|++|++++|......+..+..+++|+.|++++|.+.   .+|..+..+++|+.|++++
T Consensus       410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~  489 (680)
T 1ziw_A          410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN  489 (680)
T ss_dssp             EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred             EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence            7777776665554 45666777777777766543333344444444555555444432   3344444444444444444


Q ss_pred             Cc--CCc-cccCCCCCCcEEecCCCccc
Q 043408          198 FK--ELP-ECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       198 ~~--~lp-~~l~~l~~L~~L~L~~n~l~  222 (492)
                      +.  .++ ..+..+++|+.|++++|.++
T Consensus       490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  517 (680)
T 1ziw_A          490 NNIANINDDMLEGLEKLEILDLQHNNLA  517 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred             CCCCcCChhhhccccccCEEeCCCCCcc
Confidence            43  122 22444444444444444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.88  E-value=6.2e-22  Score=216.62  Aligned_cols=269  Identities=23%  Similarity=0.234  Sum_probs=211.1

Q ss_pred             CceEEEccCCCcc------cccc----cccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCccc-Ccccccc-cc
Q 043408            1 NLVSLEMPHSSIK------QLWK----GVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTS-LLETHSS-IQ   67 (492)
Q Consensus         1 nL~~L~L~~s~i~------~l~~----~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~-l~~~~~s-i~   67 (492)
                      +|++|+++++...      .++.    .+..+++|++|++++|.+....+. +..+++|++|++++|.. +..++.. +.
T Consensus       297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~  376 (680)
T 1ziw_A          297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV  376 (680)
T ss_dssp             TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTG
T ss_pred             CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhc
Confidence            5789999876433      3332    677899999999999987766554 88999999999998753 3333321 22


Q ss_pred             C--CcCCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCC
Q 043408           68 Y--LNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSL  143 (492)
Q Consensus        68 ~--L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L  143 (492)
                      .  ..+|+.|++++|......|..+ .+++|++|++++|.....+| ..+.++++|++|++++|......+..+..+++|
T Consensus       377 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L  456 (680)
T 1ziw_A          377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL  456 (680)
T ss_dssp             GGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTC
T ss_pred             ccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccc
Confidence            2  3689999999987444445545 79999999999977656666 578999999999999998777777888899999


Q ss_pred             CEEeccCCCCC--CCcccccCCcccccccccccccccccccc-cccCCCCcccccCCCcC--C-----c----cccCCCC
Q 043408          144 ERLNLSGCSNL--QRLPNELGNLEALKELKAEGIAIREVPSS-IVCLKNLGRLSFESFKE--L-----P----ECLGQLS  209 (492)
Q Consensus       144 ~~L~Ls~c~~l--~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~--l-----p----~~l~~l~  209 (492)
                      +.|++++|...  +.+|..++.+++|+.|++++|.+..+|.. +..+++|+.|+++++.-  +     |    ..+..++
T Consensus       457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~  536 (680)
T 1ziw_A          457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS  536 (680)
T ss_dssp             CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred             ccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence            99999997653  57888899999999999999999988764 78899999999998762  2     2    2378899


Q ss_pred             CCcEEecCCCcccccch-hhhcCccccccccccccccccCCCC----Ccccceeecccccccccccc
Q 043408          210 SLRILFLDKNNFERIPE-SIICLSHLYWLRISYCERLKSLPEL----PCDLSDIEAHCCSSLEALSG  271 (492)
Q Consensus       210 ~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~l----~~sL~~L~~~~C~~L~~l~~  271 (492)
                      +|+.|+|++|.++.+|. .+..+++|+.|++++| .++.+|..    .++|+.|++.++ .++.++.
T Consensus       537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~  601 (680)
T 1ziw_A          537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEK  601 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCH
T ss_pred             CCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccCh
Confidence            99999999999998886 5788999999999886 46677753    378999999887 4555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=4.4e-22  Score=223.29  Aligned_cols=259  Identities=20%  Similarity=0.170  Sum_probs=159.0

Q ss_pred             CceEEEccCCC-cccc-cccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccccc--ccCCcCCcEE
Q 043408            1 NLVSLEMPHSS-IKQL-WKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSS--IQYLNKLIVL   75 (492)
Q Consensus         1 nL~~L~L~~s~-i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~s--i~~L~~L~~L   75 (492)
                      +|++|+|++|. +..+ +..+..+++|++|+|++|.+....|+ |+++++|++|+|++|.....++..  ++.+++|++|
T Consensus        49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L  128 (844)
T 3j0a_A           49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL  128 (844)
T ss_dssp             SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred             cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence            36666676663 3345 45566666677777766665544443 666666666666666554444443  5666666666


Q ss_pred             eccCCCCCcccC-Ccc-CCCCCCEEEeeCCCCCcc--------------------------cCccccCCCC------CcE
Q 043408           76 NLEHCRSLTSLS-TSI-HLESLKTLILSGCSNLMK--------------------------LPSSIERLSS------LIL  121 (492)
Q Consensus        76 ~L~~~~~l~~lp-~~~-~l~~L~~L~L~~c~~l~~--------------------------lp~~i~~l~~------L~~  121 (492)
                      +|++|......+ ..+ ++++|++|++++|.....                          .|..++.+++      |++
T Consensus       129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~  208 (844)
T 3j0a_A          129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI  208 (844)
T ss_dssp             EEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSE
T ss_pred             ECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeE
Confidence            666665322222 122 566666666666543222                          2223333333      777


Q ss_pred             EEcccCCCCCccccccC------------------------------------C--CCCCCEEeccCCCCCCCcccccCC
Q 043408          122 LNLRNCSRLEGLPSKIC------------------------------------K--LKSLERLNLSGCSNLQRLPNELGN  163 (492)
Q Consensus       122 L~L~~~~~l~~lp~~i~------------------------------------~--l~~L~~L~Ls~c~~l~~lp~~l~~  163 (492)
                      |++++|......+..+.                                    .  .++|+.|++++|...+..+..++.
T Consensus       209 L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~  288 (844)
T 3j0a_A          209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET  288 (844)
T ss_dssp             EBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS
T ss_pred             EecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc
Confidence            77777654433332221                                    1  256888888887666556677788


Q ss_pred             ccccccccccccccccc-ccccccCCCCcccccCCCc--C-CccccCCCCCCcEEecCCCcccccch-hhhcCccccccc
Q 043408          164 LEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--E-LPECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLR  238 (492)
Q Consensus       164 l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~-lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~  238 (492)
                      +++|+.|++++|.+..+ |..+..+++|+.|++++|.  . .+..+..+++|+.|++++|.++.++. .+..+++|+.|+
T Consensus       289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  368 (844)
T 3j0a_A          289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD  368 (844)
T ss_dssp             CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred             CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEE
Confidence            88888888888888765 4467778888888888775  2 35677788888888888888776653 567778888888


Q ss_pred             cccccccccCCCCCcccceeecc
Q 043408          239 ISYCERLKSLPELPCDLSDIEAH  261 (492)
Q Consensus       239 L~~c~~l~~lp~l~~sL~~L~~~  261 (492)
                      +++|. ++.++. .++|+.|++.
T Consensus       369 Ls~N~-l~~i~~-~~~L~~L~l~  389 (844)
T 3j0a_A          369 LRDNA-LTTIHF-IPSIPDIFLS  389 (844)
T ss_dssp             EETCC-SCCCSS-CCSCSEEEEE
T ss_pred             CCCCC-CCcccC-CCCcchhccC
Confidence            88764 444443 2344444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=1.7e-22  Score=203.68  Aligned_cols=242  Identities=21%  Similarity=0.198  Sum_probs=201.2

Q ss_pred             CceEEEccCCCcccccc-cccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccccc-ccCCcCCcEEec
Q 043408            1 NLVSLEMPHSSIKQLWK-GVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSS-IQYLNKLIVLNL   77 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~s-i~~L~~L~~L~L   77 (492)
                      +|++|++++|+++.++. .+..+++|++|+|++|.+....+. +.++++|++|+|++|... .++.. ++.+++|++|++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEEC
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEEC
Confidence            58999999999999885 789999999999999987665554 999999999999997544 55554 889999999999


Q ss_pred             cCCCCCcccCC--cc-CCCCCCEEEeeCCCCCccc-CccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCC
Q 043408           78 EHCRSLTSLST--SI-HLESLKTLILSGCSNLMKL-PSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSN  153 (492)
Q Consensus        78 ~~~~~l~~lp~--~~-~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~  153 (492)
                      ++|. +..+|.  .+ .+++|++|++++|..+..+ +..+.++++|++|++++|...+..|..+..+++|++|++++|. 
T Consensus       132 ~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-  209 (353)
T 2z80_A          132 LGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-  209 (353)
T ss_dssp             TTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-
T ss_pred             CCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-
Confidence            9986 667776  33 8999999999998766666 4578999999999999999888889999999999999999975 


Q ss_pred             CCCcccc-cCCcccccccccccccccccccc----cccCCCCcccccCCCc-------CCccccCCCCCCcEEecCCCcc
Q 043408          154 LQRLPNE-LGNLEALKELKAEGIAIREVPSS----IVCLKNLGRLSFESFK-------ELPECLGQLSSLRILFLDKNNF  221 (492)
Q Consensus       154 l~~lp~~-l~~l~~L~~L~l~~~~i~~lp~~----~~~l~~L~~L~l~~~~-------~lp~~l~~l~~L~~L~L~~n~l  221 (492)
                      ++.+|.. ++.+++|+.|++++|.+..++..    ......++.+++.++.       .+|..+..+++|+.|++++|++
T Consensus       210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l  289 (353)
T 2z80_A          210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL  289 (353)
T ss_dssp             STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred             cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence            4566654 45588999999999999865532    2334556666666654       4677889999999999999999


Q ss_pred             cccchhh-hcCcccccccccccccc
Q 043408          222 ERIPESI-ICLSHLYWLRISYCERL  245 (492)
Q Consensus       222 ~~lp~~l-~~l~~L~~L~L~~c~~l  245 (492)
                      +.+|..+ ..+++|+.|++++|+..
T Consensus       290 ~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          290 KSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCHHHHhcCCCCCEEEeeCCCcc
Confidence            9999875 89999999999998643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.87  E-value=4.5e-22  Score=194.39  Aligned_cols=242  Identities=17%  Similarity=0.124  Sum_probs=184.7

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccc-cccccCCcCCcEEec
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLET-HSSIQYLNKLIVLNL   77 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~-~~si~~L~~L~~L~L   77 (492)
                      +|++|+|++++++.++ ..+..+++|++|+|++|.+....+ .+..+++|++|+|++|..+..+ +..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            5789999999999887 568999999999999998765545 4899999999999998756666 677899999999999


Q ss_pred             cCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCC
Q 043408           78 EHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQR  156 (492)
Q Consensus        78 ~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~  156 (492)
                      ++|......+..+ ++++|++|++++|......+..++.+++|++|++++|......+..+..+++|++|++++|...+.
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            9987433334444 799999999999765443445589999999999999876655555689999999999999877766


Q ss_pred             cccccCCccccccccccccccccccc-ccccCCCCcccccCCCcCCc--cccCCCCCCcEEecCCCccc-ccchhhhc--
Q 043408          157 LPNELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFKELP--ECLGQLSSLRILFLDKNNFE-RIPESIIC--  230 (492)
Q Consensus       157 lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~lp--~~l~~l~~L~~L~L~~n~l~-~lp~~l~~--  230 (492)
                      .|..++.+++|+.|++++|.+..++. .+..+++|+.|+++++.-.-  ........++.+....+.+. ..|..+..  
T Consensus       193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~  272 (285)
T 1ozn_A          193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRD  272 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCB
T ss_pred             CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCCcC
Confidence            78899999999999999999998885 48899999999999986210  00000112333344445544 55554433  


Q ss_pred             Cccccccccccc
Q 043408          231 LSHLYWLRISYC  242 (492)
Q Consensus       231 l~~L~~L~L~~c  242 (492)
                      +..++..++.+|
T Consensus       273 l~~l~~~~l~~C  284 (285)
T 1ozn_A          273 LKRLAANDLQGC  284 (285)
T ss_dssp             GGGSCGGGSCCC
T ss_pred             hhhcCHHHhccC
Confidence            344455455544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.87  E-value=1.9e-23  Score=207.70  Aligned_cols=256  Identities=18%  Similarity=0.096  Sum_probs=200.6

Q ss_pred             ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccC
Q 043408            2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH   79 (492)
Q Consensus         2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~   79 (492)
                      +..++++.+.+.+.+ ..+..+++|++|+|++|.+....| .+..+++|++|+|++|..... ++ +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD-LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE-ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh-hhhcCCCCEEECcC
Confidence            344556666666554 334567899999999998766555 389999999999999765443 33 88999999999999


Q ss_pred             CCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccc
Q 043408           80 CRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPN  159 (492)
Q Consensus        80 ~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~  159 (492)
                      |. ++.++.   .++|++|++++|.. ..++.  ..+++|++|++++|...+..+..+..+++|++|++++|...+..+.
T Consensus        90 n~-l~~l~~---~~~L~~L~l~~n~l-~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (317)
T 3o53_A           90 NY-VQELLV---GPSIETLHAANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (317)
T ss_dssp             SE-EEEEEE---CTTCCEEECCSSCC-SEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred             Cc-cccccC---CCCcCEEECCCCcc-CCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence            86 665553   58999999999754 44433  3478999999999988887777888999999999999866655555


Q ss_pred             cc-CCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccc
Q 043408          160 EL-GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYW  236 (492)
Q Consensus       160 ~l-~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~  236 (492)
                      .+ +.+++|+.|++++|.++.++... .+++|+.|++++|.  .+|..+..+++|+.|+|++|.++.+|..+..+++|+.
T Consensus       163 ~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~  241 (317)
T 3o53_A          163 ELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH  241 (317)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred             HHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCE
Confidence            55 47899999999999999886543 58999999999886  4777789999999999999999999999999999999


Q ss_pred             ccccccccc-ccCCCC---Ccccceeecccccccc
Q 043408          237 LRISYCERL-KSLPEL---PCDLSDIEAHCCSSLE  267 (492)
Q Consensus       237 L~L~~c~~l-~~lp~l---~~sL~~L~~~~C~~L~  267 (492)
                      |++++|+.. ..+|..   .+.|+.+++.++..++
T Consensus       242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             EEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence            999998765 344443   2345555555544443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.87  E-value=2e-21  Score=202.57  Aligned_cols=219  Identities=23%  Similarity=0.274  Sum_probs=187.2

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      +|++|+|++|+|+.++ ..+..+++|+.|+|++|.+....+. |.++++|++|+|++|......+..+..+++|++|+|+
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            5789999999999875 7789999999999999987665544 8999999999999976544444458889999999999


Q ss_pred             CCCCCcccCCcc--CCCCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCC
Q 043408           79 HCRSLTSLSTSI--HLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ  155 (492)
Q Consensus        79 ~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~  155 (492)
                      +|. +..++...  ++++|++|++++|+.++.++. .+.++++|++|+|++|...+ +| .+..+++|++|+|++|...+
T Consensus       156 ~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          156 NNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             SCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence            987 66666533  899999999999999988876 48999999999999987654 45 48889999999999987777


Q ss_pred             CcccccCCccccccccccccccccc-ccccccCCCCcccccCCCc--CCc-cccCCCCCCcEEecCCCccc
Q 043408          156 RLPNELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFK--ELP-ECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       156 ~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~--~lp-~~l~~l~~L~~L~L~~n~l~  222 (492)
                      ..|..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.  .++ ..+..+++|+.|+|++|.+.
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            7788899999999999999999976 4568899999999999986  344 45688999999999999876

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=2.2e-22  Score=211.82  Aligned_cols=214  Identities=18%  Similarity=0.078  Sum_probs=145.1

Q ss_pred             CCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEe
Q 043408           22 LVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLIL  100 (492)
Q Consensus        22 l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L  100 (492)
                      +++|+.|+|++|.+....| .++.+++|++|+|++|......|  ++.+++|++|+|++|. +..++.   .++|++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~---~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV---GPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE---CTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC---CCCcCEEEC
Confidence            3477777777776655444 37777777777777765433333  6777777777777764 554443   367777777


Q ss_pred             eCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccC-Ccccccccccccccccc
Q 043408          101 SGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELG-NLEALKELKAEGIAIRE  179 (492)
Q Consensus       101 ~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~l~~~~i~~  179 (492)
                      ++|.... ++.  ..+++|+.|+|++|...+..|..++.+++|+.|+|++|...+..|..+. .+++|+.|++++|.+..
T Consensus       107 ~~N~l~~-~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCC-EEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCC-CCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            7754333 222  2356777777777777666666777777777777777666555555554 67777777777777776


Q ss_pred             cccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCcccccccccccccc
Q 043408          180 VPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERL  245 (492)
Q Consensus       180 lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l  245 (492)
                      +|.. ..+++|+.|++++|.  .+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+..
T Consensus       184 ~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          184 VKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             cccc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            6543 347777777777765  3556677777777777777777777777777777777777777654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=5.1e-21  Score=206.65  Aligned_cols=125  Identities=22%  Similarity=0.210  Sum_probs=77.7

Q ss_pred             CCCCCCCEEeccCCCCCCCcc-cccCCccccccccccccccccc-ccccccCCCCcccccCCCcC----CccccCCCCCC
Q 043408          138 CKLKSLERLNLSGCSNLQRLP-NELGNLEALKELKAEGIAIREV-PSSIVCLKNLGRLSFESFKE----LPECLGQLSSL  211 (492)
Q Consensus       138 ~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~----lp~~l~~l~~L  211 (492)
                      ..+++|+.+++.++......+ ..+..+.+++.++++.|.+..+ +..+..+++|+.|+++++..    .|..+..+++|
T Consensus       417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L  496 (635)
T 4g8a_A          417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  496 (635)
T ss_dssp             TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence            345667777777665444333 3456667777777777776643 33455666777777776641    45566777777


Q ss_pred             cEEecCCCccccc-chhhhcCccccccccccccccccCCCC----Ccccceeecccc
Q 043408          212 RILFLDKNNFERI-PESIICLSHLYWLRISYCERLKSLPEL----PCDLSDIEAHCC  263 (492)
Q Consensus       212 ~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~l----~~sL~~L~~~~C  263 (492)
                      +.|+|++|+++.+ |..+..+++|+.|+|++|+ ++.++..    .++|+.|+++++
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N  552 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN  552 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTS
T ss_pred             CEEECCCCccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCC
Confidence            7777777777654 4566677777777777753 4444432    356666766654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.87  E-value=1.4e-21  Score=208.98  Aligned_cols=255  Identities=21%  Similarity=0.203  Sum_probs=184.0

Q ss_pred             ceEEEccCC-Ccc-cccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            2 LVSLEMPHS-SIK-QLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         2 L~~L~L~~s-~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      ++.+++.++ .+. .++..+..+++|+.|++++|.+. .+|+ +..+ +|++|++++|... .+|.  ..+++|+.|+++
T Consensus       259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~  333 (570)
T 2z63_A          259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFT  333 (570)
T ss_dssp             EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEE
T ss_pred             hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCc
Confidence            355666655 333 34566777888888888888765 4544 6666 8888888887544 5654  467888888888


Q ss_pred             CCCCCcccCCccCCCCCCEEEeeCCCCCcc--cCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCC
Q 043408           79 HCRSLTSLSTSIHLESLKTLILSGCSNLMK--LPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQR  156 (492)
Q Consensus        79 ~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~  156 (492)
                      +|......+. ..+++|++|++++|.....  .+..+..+++|++|++++|...+ +|..+..+++|++|++++|...+.
T Consensus       334 ~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          334 SNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             SCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESC
T ss_pred             CCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccc
Confidence            8775444443 5788888888888654322  25667888888888888876544 444478888888888888765554


Q ss_pred             cc-cccCCcccccccccccccccc-cccccccCCCCcccccCCCc----CCccccCCCCCCcEEecCCCccccc-chhhh
Q 043408          157 LP-NELGNLEALKELKAEGIAIRE-VPSSIVCLKNLGRLSFESFK----ELPECLGQLSSLRILFLDKNNFERI-PESII  229 (492)
Q Consensus       157 lp-~~l~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~----~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~  229 (492)
                      .+ ..++.+++|+.|++++|.+.. .|..+..+++|+.|++++|.    .+|..+..+++|+.|++++|.++.+ |..+.
T Consensus       412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~  491 (570)
T 2z63_A          412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN  491 (570)
T ss_dssp             TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence            44 457788888888888888774 45567788888888888875    3677888888888888888888765 67788


Q ss_pred             cCccccccccccccccccCCC-C---Ccccceeeccccc
Q 043408          230 CLSHLYWLRISYCERLKSLPE-L---PCDLSDIEAHCCS  264 (492)
Q Consensus       230 ~l~~L~~L~L~~c~~l~~lp~-l---~~sL~~L~~~~C~  264 (492)
                      .+++|+.|++++|+ ++.+|. .   .++|+.|++.+++
T Consensus       492 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          492 SLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence            88888888888874 444442 2   3677788877754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=3.7e-21  Score=199.85  Aligned_cols=218  Identities=24%  Similarity=0.293  Sum_probs=185.8

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccc-ccccCCcCCcEEec
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETH-SSIQYLNKLIVLNL   77 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~-~si~~L~~L~~L~L   77 (492)
                      +++.|+|++|+|+.++ ..+..+++|++|+|++|.+....+. |.++++|++|+|++|.. ..++ ..+..+++|++|+|
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC-SSCCTTTSCSCSSCCEEEC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC-CeeCHhHhhccccCceeeC
Confidence            4789999999999887 7789999999999999987654443 89999999999999754 4555 46889999999999


Q ss_pred             cCCCCCcccCCc-c-CCCCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408           78 EHCRSLTSLSTS-I-HLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL  154 (492)
Q Consensus        78 ~~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l  154 (492)
                      ++|. +..++.. + ++++|++|++++|+.+..++. .+.++++|++|+|++|... .+| .+..+++|++|+|++|...
T Consensus       144 ~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          144 RNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             CSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred             CCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence            9987 6666653 3 899999999999888888876 5899999999999998654 566 4788999999999998766


Q ss_pred             CCcccccCCcccccccccccccccccc-cccccCCCCcccccCCCc--CCc-cccCCCCCCcEEecCCCccc
Q 043408          155 QRLPNELGNLEALKELKAEGIAIREVP-SSIVCLKNLGRLSFESFK--ELP-ECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       155 ~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~--~lp-~~l~~l~~L~~L~L~~n~l~  222 (492)
                      +..|..+..+++|+.|++++|.+..++ ..+..+++|+.|++++|.  .++ ..+..+++|+.|+|++|.+.
T Consensus       221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            666888999999999999999999774 467899999999999986  344 45688999999999999976

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=1.1e-23  Score=208.99  Aligned_cols=235  Identities=17%  Similarity=0.131  Sum_probs=155.1

Q ss_pred             cCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCccc-Ccccccccc-------CCcCCcEEeccCCCCCcccCCc-
Q 043408           20 QRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTS-LLETHSSIQ-------YLNKLIVLNLEHCRSLTSLSTS-   89 (492)
Q Consensus        20 ~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~-l~~~~~si~-------~L~~L~~L~L~~~~~l~~lp~~-   89 (492)
                      +..++|+.|++++|.+  .+|. +..  .|++|+|++|.. ...++..+.       .+++|++|++++|.....+|.. 
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            4466777788888776  4443 332  277777777554 234555444       5778888888877644455554 


Q ss_pred             --cCCCCCCEEEeeCCCCCcccCccccCC-----CCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCC--cccc
Q 043408           90 --IHLESLKTLILSGCSNLMKLPSSIERL-----SSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQR--LPNE  160 (492)
Q Consensus        90 --~~l~~L~~L~L~~c~~l~~lp~~i~~l-----~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~--lp~~  160 (492)
                        ..+++|++|++++|... .+|..++.+     ++|++|++++|...+..|..++++++|++|++++|...+.  ++..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWA-TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCS-SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCc-chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence              26778888888876533 346666665     7888888888777666667777888888888887765543  2333


Q ss_pred             c--CCccccccccccccccccccc----ccccCCCCcccccCCCcC---Cc-cccCCCCCCcEEecCCCcccccchhhhc
Q 043408          161 L--GNLEALKELKAEGIAIREVPS----SIVCLKNLGRLSFESFKE---LP-ECLGQLSSLRILFLDKNNFERIPESIIC  230 (492)
Q Consensus       161 l--~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~~~~~---lp-~~l~~l~~L~~L~L~~n~l~~lp~~l~~  230 (492)
                      +  +.+++|+.|++++|.+..++.    .+..+++|+.|+++++.-   .| ..+..+++|+.|+|++|.++.+|..+. 
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-  273 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-  273 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence            3  777788888888887774432    234667888888877752   22 345567788888888888887777665 


Q ss_pred             CccccccccccccccccCCCC--Ccccceeeccc
Q 043408          231 LSHLYWLRISYCERLKSLPEL--PCDLSDIEAHC  262 (492)
Q Consensus       231 l~~L~~L~L~~c~~l~~lp~l--~~sL~~L~~~~  262 (492)
                       ++|+.|++++|+ ++.+|.+  .++|+.|++.+
T Consensus       274 -~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          274 -AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKG  305 (312)
T ss_dssp             -SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTT
T ss_pred             -CCceEEECCCCC-CCCChhHhhCCCCCEEeccC
Confidence             788888888864 5555552  24555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=4.4e-20  Score=199.14  Aligned_cols=236  Identities=24%  Similarity=0.267  Sum_probs=188.2

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      ++++|++++++++.+|..+.  ++|+.|+|++|.+. .+|.  .+++|++|+|++|. +..+|.   .+++|++|++++|
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCC
Confidence            47899999999999998776  89999999999754 5666  67999999999975 667776   6799999999997


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                      . +..+|.  .+++|+.|++++| .+..+|..   +++|++|++++|... .+|.   .+.+|+.|++++|. +..+|  
T Consensus       112 ~-l~~l~~--~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~-l~~l~--  177 (622)
T 3g06_A          112 P-LTHLPA--LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQ-LTSLP--  177 (622)
T ss_dssp             C-CCCCCC--CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSCCC--
T ss_pred             c-CCCCCC--CCCCcCEEECCCC-CCCcCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCC-CCCCc--
Confidence            6 777776  6889999999996 46667764   489999999998654 4554   35678999999864 44566  


Q ss_pred             cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccc
Q 043408          161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR  238 (492)
Q Consensus       161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~  238 (492)
                       ..+++|+.|++++|.+..+|..   +++|+.|++.+|.  .+|.   .+++|+.|+|++|.++.+|   ..+++|+.|+
T Consensus       178 -~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~  247 (622)
T 3g06_A          178 -MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELM  247 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEE
T ss_pred             -ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEE
Confidence             4568899999999999888764   4678888888775  3443   3578999999999988888   4568899999


Q ss_pred             cccccccccCCCCCcccceeecccccccccccc
Q 043408          239 ISYCERLKSLPELPCDLSDIEAHCCSSLEALSG  271 (492)
Q Consensus       239 L~~c~~l~~lp~l~~sL~~L~~~~C~~L~~l~~  271 (492)
                      +++| .++.+|..+++|+.|++.+| .++.++.
T Consensus       248 Ls~N-~L~~lp~~~~~L~~L~Ls~N-~L~~lp~  278 (622)
T 3g06_A          248 VSGN-RLTSLPMLPSGLLSLSVYRN-QLTRLPE  278 (622)
T ss_dssp             CCSS-CCSCCCCCCTTCCEEECCSS-CCCSCCG
T ss_pred             CCCC-CCCcCCcccccCcEEeCCCC-CCCcCCH
Confidence            9987 57788888888999998887 4666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=1.3e-21  Score=204.22  Aligned_cols=240  Identities=21%  Similarity=0.213  Sum_probs=120.9

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCc-------------cEEEeeCcccCccccccc
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNL-------------ESLTFRGCTSLLETHSSI   66 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL-------------~~L~L~~c~~l~~~~~si   66 (492)
                      .|++|+++++++..+|..++.+++|++|++++|.+...+|. ++.+.+|             ++|++++|. +..+|.. 
T Consensus        12 ~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~~-   89 (454)
T 1jl5_A           12 FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPEL-   89 (454)
T ss_dssp             ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCSC-
T ss_pred             cchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCCC-
Confidence            47889999999999999999999999999988887666664 7777664             777877764 4444441 


Q ss_pred             cCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEE
Q 043408           67 QYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERL  146 (492)
Q Consensus        67 ~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L  146 (492)
                        .++|++|++++|. ++.+|..  +++|++|++++|. +..++..   .++|++|++++|...+ +| .++++++|++|
T Consensus        90 --~~~L~~L~l~~n~-l~~lp~~--~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L  158 (454)
T 1jl5_A           90 --PPHLESLVASCNS-LTELPEL--PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKII  158 (454)
T ss_dssp             --CTTCSEEECCSSC-CSSCCCC--CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred             --cCCCCEEEccCCc-CCccccc--cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEE
Confidence              3567777777654 4445542  3566666666642 3333221   1456666666654443 55 35666666666


Q ss_pred             eccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCccccc
Q 043408          147 NLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERI  224 (492)
Q Consensus       147 ~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~l  224 (492)
                      ++++|.. ..+|..+   .+|+.|++++|.++.+| .+..+++|+.|++++|.  .+|..   .++|+.|++++|.++.+
T Consensus       159 ~l~~N~l-~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~l  230 (454)
T 1jl5_A          159 DVDNNSL-KKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEEL  230 (454)
T ss_dssp             ECCSSCC-SCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSC
T ss_pred             ECCCCcC-cccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCcc
Confidence            6666432 2344332   35566666666665555 35555666666555543  22221   23555555555555555


Q ss_pred             chhhhcCccccccccccccccccCCCCCcccceeecccc
Q 043408          225 PESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCC  263 (492)
Q Consensus       225 p~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~~~~C  263 (492)
                      |. +..+++|+.|++++| .++.+|..+++|+.|++.++
T Consensus       231 p~-~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N  267 (454)
T 1jl5_A          231 PE-LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDN  267 (454)
T ss_dssp             CC-CTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSS
T ss_pred             cc-cCCCCCCCEEECCCC-cCCcccccccccCEEECCCC
Confidence            52 555555555555554 23445555555555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=6.6e-22  Score=208.25  Aligned_cols=235  Identities=15%  Similarity=0.108  Sum_probs=196.0

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccC
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH   79 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~   79 (492)
                      +|++|+|++|++..++ ..+..+++|++|+|++|.+....| +..+++|++|+|++|. +..++    ..++|+.|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC----CCCCcCEEECcC
Confidence            4889999999999876 688999999999999998655444 8999999999999974 44444    348999999999


Q ss_pred             CCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccC-CCCCCCEEeccCCCCCCCcc
Q 043408           80 CRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKIC-KLKSLERLNLSGCSNLQRLP  158 (492)
Q Consensus        80 ~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~Ls~c~~l~~lp  158 (492)
                      |. +..++. ..+++|+.|++++|......|..++.+++|++|+|++|...+..|..+. .+++|+.|+|++|... .+|
T Consensus       109 N~-l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~  185 (487)
T 3oja_A          109 NN-ISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK  185 (487)
T ss_dssp             SC-CCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEE
T ss_pred             Cc-CCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-ccc
Confidence            87 444443 2578999999999876666677899999999999999988887888776 7999999999997644 444


Q ss_pred             cccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCccc--ccchhhhcCccc
Q 043408          159 NELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFE--RIPESIICLSHL  234 (492)
Q Consensus       159 ~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L  234 (492)
                      . ...+++|+.|++++|.+..+|..+..+++|+.|++++|.  .+|..+..+++|+.|++++|.+.  .+|..+..++.|
T Consensus       186 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L  264 (487)
T 3oja_A          186 G-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (487)
T ss_dssp             C-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred             c-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence            3 446899999999999999999889999999999999976  47888999999999999999987  788888999999


Q ss_pred             ccccccccccc
Q 043408          235 YWLRISYCERL  245 (492)
Q Consensus       235 ~~L~L~~c~~l  245 (492)
                      +.|+++.+..+
T Consensus       265 ~~l~~~~~~~~  275 (487)
T 3oja_A          265 QTVAKQTVKKL  275 (487)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cEEeccccccc
Confidence            98888765443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.85  E-value=4.3e-20  Score=192.66  Aligned_cols=272  Identities=24%  Similarity=0.248  Sum_probs=167.8

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|++++|+++.++..   +++|++|++++|.+. .++.+  .++|++|++++|.. ..+| .++.+++|++|++++|
T Consensus        92 ~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~-~l~~~--~~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A           92 HLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK-ALSDL--PPLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             TCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-CCCSC--CTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCEEEccCCcCCccccc---cCCCcEEECCCCccC-cccCC--CCCCCEEECcCCCC-CCCc-ccCCCCCCCEEECCCC
Confidence            366777777777776643   367778888777543 33332  26788888887643 3466 5777888888888877


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                      . ++.+|..  ..+|++|++++|. +..+| .++++++|++|++++|...+ +|..   .++|++|++++|.. ..+|. 
T Consensus       164 ~-l~~lp~~--~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l-~~lp~-  232 (454)
T 1jl5_A          164 S-LKKLPDL--PPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNIL-EELPE-  232 (454)
T ss_dssp             C-CSCCCCC--CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCC-SSCCC-
T ss_pred             c-CcccCCC--cccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcC-Ccccc-
Confidence            5 5556653  3578888888753 44465 57777888888887776543 4432   24677777777643 36663 


Q ss_pred             cCCcccccccccccccccccccccccCCCCcccccCCCc--CCcccc-----------------CCCCCCcEEecCCCcc
Q 043408          161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECL-----------------GQLSSLRILFLDKNNF  221 (492)
Q Consensus       161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l-----------------~~l~~L~~L~L~~n~l  221 (492)
                      ++.+++|+.|++++|.++.+|..   +++|+.|++++|.  .+|...                 ...++|+.|++++|.+
T Consensus       233 ~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l  309 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI  309 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred             cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence            66777777777777777666643   2556666665553  233211                 0113444455555444


Q ss_pred             cccchhhhcCccccccccccccccccCCCCCcccceeecccccccccccccchhhccCCCCCceeeccccCCCCCceeCC
Q 043408          222 ERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGMICFP  301 (492)
Q Consensus       222 ~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~~~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~c~l~~~~~~~p  301 (492)
                      +.++.   -.++|+.|++++|. +..+|..+++|+.|++.+| .++.++..       ......+.++++++..    +|
T Consensus       310 ~~i~~---~~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N-~l~~lp~~-------l~~L~~L~L~~N~l~~----l~  373 (454)
T 1jl5_A          310 RSLCD---LPPSLEELNVSNNK-LIELPALPPRLERLIASFN-HLAEVPEL-------PQNLKQLHVEYNPLRE----FP  373 (454)
T ss_dssp             SEECC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCC-------CTTCCEEECCSSCCSS----CC
T ss_pred             CcccC---CcCcCCEEECCCCc-cccccccCCcCCEEECCCC-ccccccch-------hhhccEEECCCCCCCc----CC
Confidence            43331   11578889998864 6678888889999999887 46666541       0122356666654332    22


Q ss_pred             CCCCCCceecc
Q 043408          302 GSELPEWFMFQ  312 (492)
Q Consensus       302 g~~iP~W~~~~  312 (492)
                        .+|.|+.+-
T Consensus       374 --~ip~~l~~L  382 (454)
T 1jl5_A          374 --DIPESVEDL  382 (454)
T ss_dssp             --CCCTTCCEE
T ss_pred             --CChHHHHhh
Confidence              478887654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.85  E-value=3.8e-20  Score=193.22  Aligned_cols=222  Identities=20%  Similarity=0.204  Sum_probs=185.4

Q ss_pred             cccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCE
Q 043408           18 GVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKT   97 (492)
Q Consensus        18 ~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~   97 (492)
                      .+..+++|++|++++|.+. .+|.+..+++|++|+|++|. +..++  ++.+++|++|++++|. ++.++ ..++++|++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~-~~~~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~  110 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTY  110 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCC-CCTTGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCE
T ss_pred             ChhHcCCCCEEEccCCCcc-cChhhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCE
Confidence            4567999999999999765 46789999999999999975 44554  8899999999999987 66665 348999999


Q ss_pred             EEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccc
Q 043408           98 LILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAI  177 (492)
Q Consensus        98 L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i  177 (492)
                      |++++|. +..++  ++.+++|++|++++|...+ ++  ++.+++|++|++++|...+.+  .++.+++|+.|++++|.+
T Consensus       111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l  182 (457)
T 3bz5_A          111 LNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI  182 (457)
T ss_dssp             EECCSSC-CSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred             EECCCCc-CCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence            9999974 55565  8999999999999988766 43  889999999999999888777  478899999999999999


Q ss_pred             cccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCccccccccccccccccCC-CCCcccc
Q 043408          178 REVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLP-ELPCDLS  256 (492)
Q Consensus       178 ~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~l~~sL~  256 (492)
                      +.+|  +..+++|+.|+++++.--...++.+++|+.|++++|+++.+|  +..+++|+.|++++|+ ++.+| ...++|+
T Consensus       183 ~~l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~-l~~~~~~~l~~L~  257 (457)
T 3bz5_A          183 TELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNP-LTELDVSTLSKLT  257 (457)
T ss_dssp             CCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCCCTTCTTCC
T ss_pred             ceec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCc-CCCcCHHHCCCCC
Confidence            9987  889999999999988732225889999999999999999988  8899999999999985 44444 2334444


Q ss_pred             ee
Q 043408          257 DI  258 (492)
Q Consensus       257 ~L  258 (492)
                      .|
T Consensus       258 ~L  259 (457)
T 3bz5_A          258 TL  259 (457)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=3.5e-21  Score=190.84  Aligned_cols=235  Identities=19%  Similarity=0.174  Sum_probs=159.3

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCC-CCCCC-CC-------CCCCccEEEeeCcccCccccccc--cCCc
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHL-TKIPD-LS-------LATNLESLTFRGCTSLLETHSSI--QYLN   70 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l-~~~p~-l~-------~~~nL~~L~L~~c~~l~~~~~si--~~L~   70 (492)
                      |++|++++|++ .+|..+...  |+.|+|++|.+. ..+|. +.       ++++|++|+|++|.....+|..+  +.++
T Consensus        45 L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  121 (312)
T 1wwl_A           45 LEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP  121 (312)
T ss_dssp             CTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred             ceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence            45556666777 666554443  677777776652 22333 22       56777777777776666667665  6777


Q ss_pred             CCcEEeccCCCCCcccCCcc-CC-----CCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCc--ccccc--CCC
Q 043408           71 KLIVLNLEHCRSLTSLSTSI-HL-----ESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEG--LPSKI--CKL  140 (492)
Q Consensus        71 ~L~~L~L~~~~~l~~lp~~~-~l-----~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~--lp~~i--~~l  140 (492)
                      +|++|++++|. +..+|..+ .+     ++|++|++++|......|..++++++|++|++++|...+.  +|..+  ..+
T Consensus       122 ~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          122 DLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            77888877765 44445433 33     7788888877655444446777788888888887776554  33344  677


Q ss_pred             CCCCEEeccCCCCCC--Ccc-cccCCcccccccccccccccccc--cccccCCCCcccccCCCc--CCccccCCCCCCcE
Q 043408          141 KSLERLNLSGCSNLQ--RLP-NELGNLEALKELKAEGIAIREVP--SSIVCLKNLGRLSFESFK--ELPECLGQLSSLRI  213 (492)
Q Consensus       141 ~~L~~L~Ls~c~~l~--~lp-~~l~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~  213 (492)
                      ++|++|++++|...+  .++ ..+..+++|+.|++++|.+...+  ..+..+++|+.|++++|.  .+|..+.  ++|+.
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~  278 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV  278 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence            788888887764431  222 22346677888888888777644  344556778888887765  4666665  88999


Q ss_pred             EecCCCcccccchhhhcCcccccccccccc
Q 043408          214 LFLDKNNFERIPESIICLSHLYWLRISYCE  243 (492)
Q Consensus       214 L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~  243 (492)
                      |+|++|+++.+|. +..+++|+.|++++|+
T Consensus       279 L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          279 LDLSYNRLDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             EECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred             EECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence            9999999998887 8899999999999975

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=9.5e-20  Score=178.76  Aligned_cols=200  Identities=23%  Similarity=0.236  Sum_probs=155.9

Q ss_pred             ccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCE
Q 043408           19 VQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKT   97 (492)
Q Consensus        19 ~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~   97 (492)
                      +..+++|+.++++++.+. .+| .+  .++|++|+|++|......+..+..+++|++|++++|. +..++....+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCE
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCE
Confidence            456788899999887654 444 34  3688999999877665566778889999999999876 666666568889999


Q ss_pred             EEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccc
Q 043408           98 LILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAI  177 (492)
Q Consensus        98 L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i  177 (492)
                      |++++| .+..+|..+..+++|++|++++|...+..+..+..+++|++|++++|......+..+..+++|+.|++++|++
T Consensus        82 L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            999985 5667888888899999999999877766667788889999999998765544445577888888898888888


Q ss_pred             cccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCcccccccccccc
Q 043408          178 REVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCE  243 (492)
Q Consensus       178 ~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~  243 (492)
                      +.+|..                    .+..+++|+.|+|++|.++.+|..+..+.+|+.|++++|+
T Consensus       161 ~~l~~~--------------------~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          161 TELPAG--------------------LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             SCCCTT--------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CccCHH--------------------HhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            877652                    3456777888888888888888877777788888888765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=1e-19  Score=176.79  Aligned_cols=216  Identities=19%  Similarity=0.162  Sum_probs=133.7

Q ss_pred             EEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCC
Q 043408            5 LEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSL   83 (492)
Q Consensus         5 L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l   83 (492)
                      ++..+.++..+|..+.  ++|++|+|++|.+....+ .+.++++|++|+|++|......+..+..+++|++|++++|. +
T Consensus        12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l   88 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I   88 (276)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-C
T ss_pred             EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-c
Confidence            4455566666776554  467888888877654444 47777788888887764443334456777777777777765 3


Q ss_pred             cccC-Ccc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCC-ccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           84 TSLS-TSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLE-GLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        84 ~~lp-~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                      ..++ ..+ ++++|++|++++|......+..++.+++|++|++++|.... .+|..+..+++|++|++++|...+..+..
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence            3333 323 66677777776654333333346666666666666665544 24666666666666666665443333344


Q ss_pred             cCCccccc----ccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchh-hhcCcccc
Q 043408          161 LGNLEALK----ELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPES-IICLSHLY  235 (492)
Q Consensus       161 l~~l~~L~----~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~  235 (492)
                      +..+.+|+    .|++++|.+..++.                     ......+|+.|++++|.++.+|.. +..+++|+
T Consensus       169 ~~~l~~L~~l~l~L~ls~n~l~~~~~---------------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  227 (276)
T 2z62_A          169 LRVLHQMPLLNLSLDLSLNPMNFIQP---------------------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ  227 (276)
T ss_dssp             GHHHHTCTTCCEEEECCSSCCCEECT---------------------TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred             hhhhhhccccceeeecCCCcccccCc---------------------cccCCCcccEEECCCCceeecCHhHhccccccc
Confidence            44444444    45555555554443                     333344788888888888877754 57788888


Q ss_pred             ccccccccc
Q 043408          236 WLRISYCER  244 (492)
Q Consensus       236 ~L~L~~c~~  244 (492)
                      .|++++|+.
T Consensus       228 ~L~l~~N~~  236 (276)
T 2z62_A          228 KIWLHTNPW  236 (276)
T ss_dssp             EEECCSSCB
T ss_pred             EEEccCCcc
Confidence            888888753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=3.6e-21  Score=192.16  Aligned_cols=244  Identities=20%  Similarity=0.227  Sum_probs=163.3

Q ss_pred             ceEEEccCCCcccccccccCC--CCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCcc-ccccccCCcCCcEEecc
Q 043408            2 LVSLEMPHSSIKQLWKGVQRL--VNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE-THSSIQYLNKLIVLNLE   78 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l--~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~-~~~si~~L~~L~~L~L~   78 (492)
                      ++.|+++++++.  +..+..+  ++++.|++++|.+....+.+..+++|++|+|++|..... ++..+..+++|++|+++
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~  126 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE  126 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence            457778777765  3444555  788888888887777677777788888888888764434 66677788888888888


Q ss_pred             CCCCCcccCCcc-CCCCCCEEEeeCCCCCc--ccCccccCCCCCcEEEcccC-CCCCc-cccccCCCC-CCCEEeccCCC
Q 043408           79 HCRSLTSLSTSI-HLESLKTLILSGCSNLM--KLPSSIERLSSLILLNLRNC-SRLEG-LPSKICKLK-SLERLNLSGCS  152 (492)
Q Consensus        79 ~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~L~~~-~~l~~-lp~~i~~l~-~L~~L~Ls~c~  152 (492)
                      +|......+..+ .+++|++|++++|..+.  .++..+.++++|++|++++| ..... ++..+..++ +|++|++++|.
T Consensus       127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            876333333333 67888888888875555  35666778888888888888 44332 566677778 88888888874


Q ss_pred             -CC--CCcccccCCccccccccccccc-cc-ccccccccCCCCcccccCCCcCCcc----ccCCCCCCcEEecCCCcccc
Q 043408          153 -NL--QRLPNELGNLEALKELKAEGIA-IR-EVPSSIVCLKNLGRLSFESFKELPE----CLGQLSSLRILFLDKNNFER  223 (492)
Q Consensus       153 -~l--~~lp~~l~~l~~L~~L~l~~~~-i~-~lp~~~~~l~~L~~L~l~~~~~lp~----~l~~l~~L~~L~L~~n~l~~  223 (492)
                       ..  ..++..++.+++|+.|++++|. ++ ..+..+..+++|+.|++++|..+.+    .+..+++|+.|++++| ++.
T Consensus       207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~  285 (336)
T 2ast_B          207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  285 (336)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence             22  3456666777788888888887 43 5555677777777777777754332    3666777777777777 321


Q ss_pred             cchhhhcC-ccccccccccccccccCCC
Q 043408          224 IPESIICL-SHLYWLRISYCERLKSLPE  250 (492)
Q Consensus       224 lp~~l~~l-~~L~~L~L~~c~~l~~lp~  250 (492)
                        ..+..+ ..|+.|++++|..-+..|.
T Consensus       286 --~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          286 --GTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             --TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             --HHHHHHHhhCcceEEecccCccccCC
Confidence              122222 2355666665544334443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=5.7e-19  Score=171.17  Aligned_cols=196  Identities=20%  Similarity=0.240  Sum_probs=96.2

Q ss_pred             eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCcccccc-ccCCcCCcEEeccCC
Q 043408            3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSS-IQYLNKLIVLNLEHC   80 (492)
Q Consensus         3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~s-i~~L~~L~~L~L~~~   80 (492)
                      +.+++++++++.+|..+.  ++|+.|+|++|.+....+ .+.++++|++|+|++|. +..++.. +..+++|++|++++|
T Consensus        19 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC
Confidence            445555555555554433  455555555555433332 25555555555555543 2233332 244555555555554


Q ss_pred             CCCcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcc
Q 043408           81 RSLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP  158 (492)
Q Consensus        81 ~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp  158 (492)
                      . +..++...  .+++|++|++++|......+..+..+++|++|+|++|......+..+..+++|++|++++|......+
T Consensus        96 ~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           96 K-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             C-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             c-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            4 33333221  45555555555533222222334455555555555544333222334445555555555443322222


Q ss_pred             cccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccc
Q 043408          159 NELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       159 ~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~  222 (492)
                      ..+..+++|+.|++++|.++.+|.                    ..+..+++|+.|+|++|.+.
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~--------------------~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPE--------------------GAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCT--------------------TTTTTCTTCCEEECCSSCBC
T ss_pred             hHhccCCCcCEEECCCCcCCcCCH--------------------HHhccccCCCEEEecCCCee
Confidence            234444445555554444443332                    24667888999999999875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=4.4e-19  Score=191.35  Aligned_cols=229  Identities=24%  Similarity=0.245  Sum_probs=177.9

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|+|++|+|+.++.   .+++|++|+|++|.+. .+|.  .+++|++|+|++| .+..+|.   .+.+|+.|++++|
T Consensus        62 ~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N  131 (622)
T 3g06_A           62 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV--LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGN  131 (622)
T ss_dssp             TCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC--CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSS
T ss_pred             CCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCC
Confidence            58999999999999987   5789999999999854 5666  7899999999986 4555665   5789999999998


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                      . +..+|..  +++|++|++++| .+..+|.   .+.+|+.|++++|... .+|   ..+++|+.|++++|. +..+|..
T Consensus       132 ~-l~~lp~~--l~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~-l~~l~~~  199 (622)
T 3g06_A          132 Q-LTSLPVL--PPGLQELSVSDN-QLASLPA---LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQ-LASLPTL  199 (622)
T ss_dssp             C-CSCCCCC--CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSC-CSCCCCC
T ss_pred             C-CCcCCCC--CCCCCEEECcCC-cCCCcCC---ccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCC-CCCCCCc
Confidence            6 7777763  589999999997 4555664   3468889999987654 465   456889999999865 4456653


Q ss_pred             cCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccc
Q 043408          161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR  238 (492)
Q Consensus       161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~  238 (492)
                         +++|+.|++++|.+..+|..   +++|+.|++++|.  .+|   ..+++|+.|+|++|.++.+|.   .+++|+.|+
T Consensus       200 ---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~  267 (622)
T 3g06_A          200 ---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLS  267 (622)
T ss_dssp             ---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred             ---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEe
Confidence               46788888888888888753   4778888888775  345   556888899999988888886   667888888


Q ss_pred             cccccccccCCCC---Ccccceeeccccc
Q 043408          239 ISYCERLKSLPEL---PCDLSDIEAHCCS  264 (492)
Q Consensus       239 L~~c~~l~~lp~l---~~sL~~L~~~~C~  264 (492)
                      +++| .+..+|..   .++|+.|++.+++
T Consensus       268 Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          268 VYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             CCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence            8887 45677753   3567778887765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=1.5e-19  Score=175.60  Aligned_cols=220  Identities=19%  Similarity=0.239  Sum_probs=142.7

Q ss_pred             ccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCccc
Q 043408            7 MPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSL   86 (492)
Q Consensus         7 L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~l   86 (492)
                      +..+.+..+ .....+++|+.|++++|.+ +.++.+..+++|++|+|++|.. ..+ +.+..+++|++|++++|. +..+
T Consensus        26 l~~~~~~~~-~~~~~l~~L~~L~l~~~~i-~~~~~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~n~-l~~~  100 (272)
T 3rfs_A           26 LKKKSVTDA-VTQNELNSIDQIIANNSDI-KSVQGIQYLPNVRYLALGGNKL-HDI-SALKELTNLTYLILTGNQ-LQSL  100 (272)
T ss_dssp             HTCSCTTSE-ECHHHHTTCCEEECTTSCC-CCCTTGGGCTTCCEEECTTSCC-CCC-GGGTTCTTCCEEECTTSC-CCCC
T ss_pred             hcCcccccc-cccccccceeeeeeCCCCc-ccccccccCCCCcEEECCCCCC-CCc-hhhcCCCCCCEEECCCCc-cCcc
Confidence            334444433 2345577888888887763 4566677788888888887653 333 366777778888887765 4444


Q ss_pred             CCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCc
Q 043408           87 STSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNL  164 (492)
Q Consensus        87 p~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l  164 (492)
                      +...  ++++|++|++++|......+..++.+++|++|++++|...+..+..+..+++|++|++++|...+..+..++.+
T Consensus       101 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  180 (272)
T 3rfs_A          101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL  180 (272)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC
Confidence            4422  67777777777755433333446777777777777776554444455667777777777765444334445666


Q ss_pred             ccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCccccccccccccc
Q 043408          165 EALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCER  244 (492)
Q Consensus       165 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~  244 (492)
                      ++|+.|++++|.+..++.                    ..+..+++|+.|++++|.+.      ..+++|+.|++..|..
T Consensus       181 ~~L~~L~L~~N~l~~~~~--------------------~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          181 TQLKDLRLYQNQLKSVPD--------------------GVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKH  234 (272)
T ss_dssp             TTCCEEECCSSCCSCCCT--------------------TTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHT
T ss_pred             ccCCEEECCCCcCCccCH--------------------HHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhC
Confidence            777777777776665443                    34567788888888888765      2355788888888887


Q ss_pred             cccCCCCCcccce
Q 043408          245 LKSLPELPCDLSD  257 (492)
Q Consensus       245 l~~lp~l~~sL~~  257 (492)
                      .+.+|....++..
T Consensus       235 ~g~ip~~~~~~~~  247 (272)
T 3rfs_A          235 SGVVRNSAGSVAP  247 (272)
T ss_dssp             GGGBBCTTSCBCG
T ss_pred             CCcccCcccccCC
Confidence            7788876555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=3.3e-19  Score=173.08  Aligned_cols=202  Identities=22%  Similarity=0.183  Sum_probs=163.3

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|++.++.++.++ ++..+++|++|+|++|.+. .++.+..+++|++|+|++|......+..++.+++|++|++++|
T Consensus        42 ~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  119 (272)
T 3rfs_A           42 SIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN  119 (272)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence            4789999999999875 5888999999999999864 4678999999999999998655444455789999999999998


Q ss_pred             CCCcccCCc-c-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCc
Q 043408           81 RSLTSLSTS-I-HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRL  157 (492)
Q Consensus        81 ~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l  157 (492)
                      . +..++.. + .+++|++|++++|. +..++ ..++.+++|++|++++|...+..+..+..+++|++|++++|...+..
T Consensus       120 ~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          120 Q-LQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             c-CCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            7 5566553 3 89999999999975 44554 45789999999999999877666666789999999999998777666


Q ss_pred             ccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccc-ccchhhhcCcc
Q 043408          158 PNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE-RIPESIICLSH  233 (492)
Q Consensus       158 p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~  233 (492)
                      +..++.+++|+.|++++|.+.                           +.+++|+.|+++.|.++ .+|.+++.+..
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~---------------------------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          198 DGVFDRLTSLQYIWLHDNPWD---------------------------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCBC---------------------------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             HHHHhCCcCCCEEEccCCCcc---------------------------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            667899999999999998643                           33556777777777776 67776665544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.80  E-value=7.1e-19  Score=172.53  Aligned_cols=195  Identities=22%  Similarity=0.174  Sum_probs=159.4

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEH   79 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~   79 (492)
                      +|+++++++++++.+|.++.  ++|+.|+|++|.+....+ .+..+++|++|+|++|. +..++.. +.+++|++|++++
T Consensus        11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~   86 (290)
T 1p9a_G           11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSH   86 (290)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCS
T ss_pred             CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCC
Confidence            47899999999999997765  799999999998765544 48999999999999965 5555544 7899999999999


Q ss_pred             CCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcc
Q 043408           80 CRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP  158 (492)
Q Consensus        80 ~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp  158 (492)
                      |. +..+|..+ .+++|++|++++|......+..+.++++|++|+|++|......+..+..+++|+.|+|++|... .+|
T Consensus        87 N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~  164 (290)
T 1p9a_G           87 NQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELP  164 (290)
T ss_dssp             SC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCC
T ss_pred             Cc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccC
Confidence            86 77888766 8999999999997544433467999999999999999877666666789999999999997554 555


Q ss_pred             c-ccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccc
Q 043408          159 N-ELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       159 ~-~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~  222 (492)
                      . .+..+++|+.|++++|.++.+|..+                     ..+++|+.|+|++|.+.
T Consensus       165 ~~~~~~l~~L~~L~L~~N~l~~ip~~~---------------------~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          165 AGLLNGLENLDTLLLQENSLYTIPKGF---------------------FGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTT---------------------TTTCCCSEEECCSCCBC
T ss_pred             HHHhcCcCCCCEEECCCCcCCccChhh---------------------cccccCCeEEeCCCCcc
Confidence            4 5688999999999999998877644                     44556777888888765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=3.3e-19  Score=169.53  Aligned_cols=193  Identities=16%  Similarity=0.194  Sum_probs=102.7

Q ss_pred             CCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCc-c-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEE
Q 043408           46 TNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTS-I-HLESLKTLILSGCSNLMKLP-SSIERLSSLILL  122 (492)
Q Consensus        46 ~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L  122 (492)
                      ++|++|+|++|......+..+..+++|++|++++|..++.++.. + ++++|++|++++|+.+..++ ..+.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            35566666554322222224555566666666655444444432 2 55666666666544444444 345666666666


Q ss_pred             EcccCCCCCccccccCCCCCCC---EEeccCCCCCCCccc-ccCCccccc-ccccccccccccccccccCCCCcccccCC
Q 043408          123 NLRNCSRLEGLPSKICKLKSLE---RLNLSGCSNLQRLPN-ELGNLEALK-ELKAEGIAIREVPSSIVCLKNLGRLSFES  197 (492)
Q Consensus       123 ~L~~~~~l~~lp~~i~~l~~L~---~L~Ls~c~~l~~lp~-~l~~l~~L~-~L~l~~~~i~~lp~~~~~l~~L~~L~l~~  197 (492)
                      ++++|...+ +|. +..+++|+   +|++++|..++.+|. .++.+++|+ .|++++|.++.+|......++|+.|++.+
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence            666665433 554 55566665   777776634444443 366667777 77777777666665433223444444444


Q ss_pred             Cc---CC-ccccCCC-CCCcEEecCCCcccccchhhhcCccccccccccc
Q 043408          198 FK---EL-PECLGQL-SSLRILFLDKNNFERIPESIICLSHLYWLRISYC  242 (492)
Q Consensus       198 ~~---~l-p~~l~~l-~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c  242 (492)
                      +.   .+ +..+..+ ++|+.|++++|+++.+|..  .+++|+.|+++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            32   12 1234455 5666666666666555543  4455555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.80  E-value=1.3e-18  Score=168.90  Aligned_cols=224  Identities=25%  Similarity=0.251  Sum_probs=154.7

Q ss_pred             EEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCC-cc-CCCCCCEEEeeCCC
Q 043408           27 HLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLST-SI-HLESLKTLILSGCS  104 (492)
Q Consensus        27 ~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~-~~-~l~~L~~L~L~~c~  104 (492)
                      .++.++.. .+.+|. .-.++|++|+|++|......+..+..+++|++|++++|. +..++. .+ ++++|++|++++|.
T Consensus        11 ~~~c~~~~-l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELN-FYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSC-CSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCC-ccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc
Confidence            34444433 334554 112578899998865444444477888889999988875 555544 23 78888888888865


Q ss_pred             CCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCC-CcccccCCccccccccccccccccccc-
Q 043408          105 NLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ-RLPNELGNLEALKELKAEGIAIREVPS-  182 (492)
Q Consensus       105 ~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~~lp~-  182 (492)
                      .....+..+.++++|++|++++|......+..+.++++|++|++++|.... .+|..++.+++|+.|++++|.++.++. 
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            444444667888888888888877666555567788888888888865544 367778888888888888887776643 


Q ss_pred             ccccCCCCcccccCCCcCCccccCCCCCCc-EEecCCCcccccchhhhcCccccccccccccccccCCCC----Ccccce
Q 043408          183 SIVCLKNLGRLSFESFKELPECLGQLSSLR-ILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPEL----PCDLSD  257 (492)
Q Consensus       183 ~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~-~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l----~~sL~~  257 (492)
                      .+..+++                  ++.|. .|++++|.++.++.......+|+.|++++|. ++.+|..    .++|+.
T Consensus       168 ~~~~l~~------------------L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  228 (276)
T 2z62_A          168 DLRVLHQ------------------MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQK  228 (276)
T ss_dssp             GGHHHHT------------------CTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCE
T ss_pred             Hhhhhhh------------------ccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccE
Confidence            2322222                  23333 8999999999888777777799999999986 6676642    467889


Q ss_pred             eecc------ccccccccccc
Q 043408          258 IEAH------CCSSLEALSGL  272 (492)
Q Consensus       258 L~~~------~C~~L~~l~~~  272 (492)
                      |++.      +|+.++.+..+
T Consensus       229 L~l~~N~~~c~c~~l~~l~~~  249 (276)
T 2z62_A          229 IWLHTNPWDCSCPRIDYLSRW  249 (276)
T ss_dssp             EECCSSCBCCCTTTTHHHHHH
T ss_pred             EEccCCcccccCCchHHHHHH
Confidence            9888      45555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.80  E-value=2.3e-18  Score=166.87  Aligned_cols=198  Identities=24%  Similarity=0.318  Sum_probs=145.2

Q ss_pred             CCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc--CCCCCCEEEe
Q 043408           23 VNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLIL  100 (492)
Q Consensus        23 ~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L  100 (492)
                      .+++.++++++.+. .+|. .-.++|++|+|++|......+..+..+++|++|++++|. +..++...  ++++|++|++
T Consensus        16 ~~~~~l~~~~~~l~-~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCC-ccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEEC
Confidence            45889999987754 5554 123689999999876444444478889999999998876 56666543  6888888888


Q ss_pred             eCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccc
Q 043408          101 SGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIRE  179 (492)
Q Consensus       101 ~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~  179 (492)
                      ++|. +..+| ..+..+++|++|++++|......+..+..+++|++|++++|...+..+..++.+++|+.|++++|.+..
T Consensus        93 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           93 TDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            8865 44444 446778888888888877666666667778888888888764443333346777777777777777766


Q ss_pred             cccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccch-hhhcCccccccccccccc
Q 043408          180 VPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCER  244 (492)
Q Consensus       180 lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~  244 (492)
                      ++.                    ..+..+++|+.|+|++|.++.+|. .+..+++|+.|++++|+.
T Consensus       172 ~~~--------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          172 VPE--------------------GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCT--------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             eCh--------------------hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            543                    245778899999999999998876 477899999999999863

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=1.2e-18  Score=172.33  Aligned_cols=207  Identities=22%  Similarity=0.315  Sum_probs=160.0

Q ss_pred             cCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccC
Q 043408            8 PHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLS   87 (492)
Q Consensus         8 ~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp   87 (492)
                      ..+++..+. ....+++|+.|++++|.+ +.++.+..+++|++|+|++|. +..++. +..+++|++|++++|. ++.++
T Consensus        27 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i-~~l~~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~  101 (308)
T 1h6u_A           27 GKSNVTDTV-TQADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS  101 (308)
T ss_dssp             TCSSTTSEE-CHHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG
T ss_pred             CCCCcCcee-cHHHcCCcCEEEeeCCCc-cCchhhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch
Confidence            334444331 234688999999999865 456788899999999999974 555665 8899999999999987 77777


Q ss_pred             CccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccc
Q 043408           88 TSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEAL  167 (492)
Q Consensus        88 ~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L  167 (492)
                      ....+++|++|++++|. +..++. +..+++|++|++++|...+ ++. +..+++|+.|++++|. +..++. +..+++|
T Consensus       102 ~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L  175 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKL  175 (308)
T ss_dssp             GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTC
T ss_pred             hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCc-CCCChh-hcCCCCC
Confidence            65589999999999975 455554 8999999999999987654 333 8889999999999974 445555 8899999


Q ss_pred             cccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCcccccccccccccccc
Q 043408          168 KELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKS  247 (492)
Q Consensus       168 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~  247 (492)
                      +.|++++|.+..++.                      +..+++|+.|++++|.++.++. +..+++|+.|++++|+ +..
T Consensus       176 ~~L~l~~n~l~~~~~----------------------l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~-i~~  231 (308)
T 1h6u_A          176 TTLKADDNKISDISP----------------------LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT-ITN  231 (308)
T ss_dssp             CEEECCSSCCCCCGG----------------------GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE-EEC
T ss_pred             CEEECCCCccCcChh----------------------hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe-eec
Confidence            999999999887753                      3456777888888888877766 6778888888888865 344


Q ss_pred             CC
Q 043408          248 LP  249 (492)
Q Consensus       248 lp  249 (492)
                      .|
T Consensus       232 ~~  233 (308)
T 1h6u_A          232 QP  233 (308)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=1.3e-18  Score=165.34  Aligned_cols=202  Identities=17%  Similarity=0.161  Sum_probs=128.2

Q ss_pred             CcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCCCCcccCC
Q 043408           11 SIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCRSLTSLST   88 (492)
Q Consensus        11 ~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~~l~~lp~   88 (492)
                      +++++|. +.  ++|++|+|++|.+....+ .+..+++|++|++++|..+..++. .+..+++|++|++++|..++.++.
T Consensus        22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            3556665 32  367777777776544444 367777777777777654555554 566777777777776444666654


Q ss_pred             cc--CCCCCCEEEeeCCCCCcccCccccCCCCCc---EEEcccCCCCCccc-cccCCCCCCC-EEeccCCCCCCCccccc
Q 043408           89 SI--HLESLKTLILSGCSNLMKLPSSIERLSSLI---LLNLRNCSRLEGLP-SKICKLKSLE-RLNLSGCSNLQRLPNEL  161 (492)
Q Consensus        89 ~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~---~L~L~~~~~l~~lp-~~i~~l~~L~-~L~Ls~c~~l~~lp~~l  161 (492)
                      ..  ++++|++|++++|. +..+|. +..+++|+   +|++++|..+..+| ..+..+++|+ +|++++|.. ..+|...
T Consensus        99 ~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~  175 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYA  175 (239)
T ss_dssp             TSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTT
T ss_pred             HHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhh
Confidence            33  67777777777754 444665 66666666   77777773344443 3466777777 777777543 3555543


Q ss_pred             CCccccccccccccc-cccccc-ccccC-CCCcccccCCCc--CCccccCCCCCCcEEecCCCc
Q 043408          162 GNLEALKELKAEGIA-IREVPS-SIVCL-KNLGRLSFESFK--ELPECLGQLSSLRILFLDKNN  220 (492)
Q Consensus       162 ~~l~~L~~L~l~~~~-i~~lp~-~~~~l-~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~  220 (492)
                      ...++|+.|++++|. ++.+|. .+..+ ++|+.|+++++.  .+|..  .+++|+.|+++++.
T Consensus       176 ~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred             cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence            333677777777774 776653 45666 777777777754  34443  57788888887763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=3.1e-18  Score=169.35  Aligned_cols=168  Identities=24%  Similarity=0.336  Sum_probs=83.2

Q ss_pred             CCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEE
Q 043408           43 SLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILL  122 (492)
Q Consensus        43 ~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L  122 (492)
                      ..+++|++|++++|. +..++ .+..+++|++|++++|. +..++....+++|++|++++|. +..++ .+..+++|++|
T Consensus        38 ~~l~~L~~L~l~~~~-i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L  112 (308)
T 1h6u_A           38 ADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL  112 (308)
T ss_dssp             HHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred             HHcCCcCEEEeeCCC-ccCch-hhhccCCCCEEEccCCc-CCCChhHccCCCCCEEEccCCc-CCCch-hhcCCCCCCEE
Confidence            344555555555542 33333 35555555555555543 4444442255555555555543 33332 45555555555


Q ss_pred             EcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCc
Q 043408          123 NLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELP  202 (492)
Q Consensus       123 ~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp  202 (492)
                      ++++|...+ ++. +..+++|++|++++|.. ..++. ++.+++|+.|++++|.+..++.                    
T Consensus       113 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~--------------------  168 (308)
T 1h6u_A          113 DLTSTQITD-VTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNAQVSDLTP--------------------  168 (308)
T ss_dssp             ECTTSCCCC-CGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCCCGG--------------------
T ss_pred             ECCCCCCCC-chh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCCcCCCChh--------------------
Confidence            555554332 222 55555555555555432 22322 4455555555555555444321                    


Q ss_pred             cccCCCCCCcEEecCCCcccccchhhhcCccccccccccc
Q 043408          203 ECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYC  242 (492)
Q Consensus       203 ~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c  242 (492)
                        +..+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus       169 --l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          169 --LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNN  205 (308)
T ss_dssp             --GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTS
T ss_pred             --hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCC
Confidence              2344555555555555555443 455555555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=1.8e-18  Score=174.10  Aligned_cols=230  Identities=17%  Similarity=0.160  Sum_probs=96.8

Q ss_pred             EccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCCCC
Q 043408            6 EMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCRSL   83 (492)
Q Consensus         6 ~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~~l   83 (492)
                      +-++++++++|.++  .+++++|+|++|++....++ |.++++|++|+|++|.....++. .+..+++|+.+...++..+
T Consensus        15 ~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l   92 (350)
T 4ay9_X           15 LCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL   92 (350)
T ss_dssp             EEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred             EecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence            33444444444433  13444555554443222221 44445555555554444333332 2334444443332222233


Q ss_pred             cccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCcccc-ccCCC-CCCCEEeccCCCCCCCccc
Q 043408           84 TSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPS-KICKL-KSLERLNLSGCSNLQRLPN  159 (492)
Q Consensus        84 ~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~i~~l-~~L~~L~Ls~c~~l~~lp~  159 (492)
                      ..++...  .+++|++|++++|......+..+....++..|++.++..+..++. .+..+ ..++.|++++| .++.+|.
T Consensus        93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~  171 (350)
T 4ay9_X           93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHN  171 (350)
T ss_dssp             CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECT
T ss_pred             cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCCh
Confidence            3333221  444455555544322111112233333444444444433333332 12222 23444444442 2233443


Q ss_pred             ccCCcccccccccc-cccccccccc-cccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCc-ccccchhhhcCccc
Q 043408          160 ELGNLEALKELKAE-GIAIREVPSS-IVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNN-FERIPESIICLSHL  234 (492)
Q Consensus       160 ~l~~l~~L~~L~l~-~~~i~~lp~~-~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L  234 (492)
                      ......+|+.|++. +|.++.+|.. +..+++|+.|+++++.  .+|.  ..+.+|+.|.+.+++ ++.+| .+..+++|
T Consensus       172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L  248 (350)
T 4ay9_X          172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVAL  248 (350)
T ss_dssp             TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSC
T ss_pred             hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcCC-CchhCcCh
Confidence            33333444444443 2344444432 3444444455444443  2332  224455555544443 56666 36666777


Q ss_pred             ccccccc
Q 043408          235 YWLRISY  241 (492)
Q Consensus       235 ~~L~L~~  241 (492)
                      +.+++.+
T Consensus       249 ~~l~l~~  255 (350)
T 4ay9_X          249 MEASLTY  255 (350)
T ss_dssp             CEEECSC
T ss_pred             hhCcCCC
Confidence            7776654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=2.7e-20  Score=185.72  Aligned_cols=227  Identities=22%  Similarity=0.274  Sum_probs=181.2

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCC-CCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTK-IPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      +++.|+++++.+...+..+..+++|++|+|++|.+... ++. +..+++|++|+|++|......+..++.+++|++|+++
T Consensus        71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~  150 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  150 (336)
T ss_dssp             TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence            47899999999998887788899999999999986543 444 7889999999999997666788889999999999999


Q ss_pred             CCCCCcc--cCCcc-CCCCCCEEEeeCCCCCcc--cCccccCCC-CCcEEEcccCC--CC-CccccccCCCCCCCEEecc
Q 043408           79 HCRSLTS--LSTSI-HLESLKTLILSGCSNLMK--LPSSIERLS-SLILLNLRNCS--RL-EGLPSKICKLKSLERLNLS  149 (492)
Q Consensus        79 ~~~~l~~--lp~~~-~l~~L~~L~L~~c~~l~~--lp~~i~~l~-~L~~L~L~~~~--~l-~~lp~~i~~l~~L~~L~Ls  149 (492)
                      +|..+..  ++..+ ++++|++|++++|..+..  ++..+..++ +|++|++++|.  .. ..+|..+.++++|+.|+++
T Consensus       151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~  230 (336)
T 2ast_B          151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  230 (336)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence            9965653  55544 799999999999845553  677789999 99999999984  33 4567778889999999999


Q ss_pred             CCCCC-CCcccccCCccccccccccccc-cc-ccccccccCCCCcccccCCCcCCcc-ccCCC-CCCcEEecCCCcccc-
Q 043408          150 GCSNL-QRLPNELGNLEALKELKAEGIA-IR-EVPSSIVCLKNLGRLSFESFKELPE-CLGQL-SSLRILFLDKNNFER-  223 (492)
Q Consensus       150 ~c~~l-~~lp~~l~~l~~L~~L~l~~~~-i~-~lp~~~~~l~~L~~L~l~~~~~lp~-~l~~l-~~L~~L~L~~n~l~~-  223 (492)
                      +|..+ ...+..+..+++|+.|++++|. +. .....+..+++|+.|++.+|  +++ .+..+ ..|+.|++++|.++. 
T Consensus       231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQINCSHFTTI  308 (336)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEESCCCSCCT
T ss_pred             CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceEEecccCccc
Confidence            99844 4667788999999999999995 32 11125788999999999999  554 34444 347777899999884 


Q ss_pred             cchhhh
Q 043408          224 IPESII  229 (492)
Q Consensus       224 lp~~l~  229 (492)
                      .|..++
T Consensus       309 ~~~~~~  314 (336)
T 2ast_B          309 ARPTIG  314 (336)
T ss_dssp             TCSSCS
T ss_pred             cCCccc
Confidence            454443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.77  E-value=1.4e-20  Score=191.85  Aligned_cols=233  Identities=15%  Similarity=0.108  Sum_probs=173.1

Q ss_pred             cccccccccCCCCCcEEEccCCCCCCCC----C-CCCCCCCccEEEeeCcc--cC-ccccccc-------cCCcCCcEEe
Q 043408           12 IKQLWKGVQRLVNLKHLNLSHSEHLTKI----P-DLSLATNLESLTFRGCT--SL-LETHSSI-------QYLNKLIVLN   76 (492)
Q Consensus        12 i~~l~~~~~~l~~L~~L~Ls~~~~l~~~----p-~l~~~~nL~~L~L~~c~--~l-~~~~~si-------~~L~~L~~L~   76 (492)
                      +..+...+..+++|+.|+|++|.+....    + .+..+++|++|+|++|.  .+ ..+|..+       ..+++|++|+
T Consensus        21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            3355666778899999999998765432    2 37788999999999873  22 2344443       6889999999


Q ss_pred             ccCCCCCc----ccCCcc-CCCCCCEEEeeCCCCCcc----cCccccCC---------CCCcEEEcccCCCC-Cccc---
Q 043408           77 LEHCRSLT----SLSTSI-HLESLKTLILSGCSNLMK----LPSSIERL---------SSLILLNLRNCSRL-EGLP---  134 (492)
Q Consensus        77 L~~~~~l~----~lp~~~-~l~~L~~L~L~~c~~l~~----lp~~i~~l---------~~L~~L~L~~~~~l-~~lp---  134 (492)
                      |++|..-.    .++..+ .+++|++|++++|.....    ++..+..+         ++|++|++++|... ..++   
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence            99987333    244444 789999999999765322    33334444         89999999998876 3444   


Q ss_pred             cccCCCCCCCEEeccCCCCCC-----CcccccCCcccccccccccccc-----cccccccccCCCCcccccCCCcC----
Q 043408          135 SKICKLKSLERLNLSGCSNLQ-----RLPNELGNLEALKELKAEGIAI-----REVPSSIVCLKNLGRLSFESFKE----  200 (492)
Q Consensus       135 ~~i~~l~~L~~L~Ls~c~~l~-----~lp~~l~~l~~L~~L~l~~~~i-----~~lp~~~~~l~~L~~L~l~~~~~----  200 (492)
                      ..+..+++|++|++++|....     .++..+..+++|+.|++++|.+     ..+|..+..+++|+.|++++|.-    
T Consensus       181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  260 (386)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence            466778899999999975431     2344778889999999999988     56788888889999999988862    


Q ss_pred             ---Ccccc--CCCCCCcEEecCCCcccc-----cchhh-hcCccccccccccccc
Q 043408          201 ---LPECL--GQLSSLRILFLDKNNFER-----IPESI-ICLSHLYWLRISYCER  244 (492)
Q Consensus       201 ---lp~~l--~~l~~L~~L~L~~n~l~~-----lp~~l-~~l~~L~~L~L~~c~~  244 (492)
                         ++..+  +.+++|+.|+|++|.++.     +|..+ .++++|+.|++++|+.
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence               45555  448899999999999886     88877 5689999999998764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=1.8e-18  Score=171.11  Aligned_cols=217  Identities=17%  Similarity=0.094  Sum_probs=137.8

Q ss_pred             CCcEEEccCCCCCCC----CCCCCCCCCccEEEeeCcccCccccccc--cCCcCCcEEeccCCCCCcccCCc-----cCC
Q 043408           24 NLKHLNLSHSEHLTK----IPDLSLATNLESLTFRGCTSLLETHSSI--QYLNKLIVLNLEHCRSLTSLSTS-----IHL   92 (492)
Q Consensus        24 ~L~~L~Ls~~~~l~~----~p~l~~~~nL~~L~L~~c~~l~~~~~si--~~L~~L~~L~L~~~~~l~~lp~~-----~~l   92 (492)
                      .++.+.+.++.....    +..+..+++|++|+|++|......|..+  ..+++|++|++++|......+..     ..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            356666665543211    1112223557777777766666666665  66777777777776533322210     146


Q ss_pred             CCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCc--cc--cccCCCCCCCEEeccCCCCCCCccc----ccCCc
Q 043408           93 ESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEG--LP--SKICKLKSLERLNLSGCSNLQRLPN----ELGNL  164 (492)
Q Consensus        93 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~--lp--~~i~~l~~L~~L~Ls~c~~l~~lp~----~l~~l  164 (492)
                      ++|++|++++|......+..++.+++|++|+|++|...+.  ++  ..+..+++|++|++++|.. +.++.    .++.+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcC
Confidence            6777777777655444455677777777777777765432  22  2235677777777777543 33433    24566


Q ss_pred             cccccccccccccccc-ccccccC---CCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccc
Q 043408          165 EALKELKAEGIAIREV-PSSIVCL---KNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR  238 (492)
Q Consensus       165 ~~L~~L~l~~~~i~~l-p~~~~~l---~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~  238 (492)
                      ++|++|++++|.+..+ |..+..+   ++|+.|++++|.  .+|..+.  ++|+.|+|++|+++.+|. +..+++|+.|+
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~  300 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLT  300 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEE
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEE
Confidence            7777777777777765 6555555   577777777665  4666553  789999999999998875 67889999999


Q ss_pred             cccccc
Q 043408          239 ISYCER  244 (492)
Q Consensus       239 L~~c~~  244 (492)
                      +++|+.
T Consensus       301 L~~N~l  306 (310)
T 4glp_A          301 LDGNPF  306 (310)
T ss_dssp             CSSTTT
T ss_pred             CcCCCC
Confidence            999763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.76  E-value=6.8e-20  Score=190.78  Aligned_cols=262  Identities=20%  Similarity=0.190  Sum_probs=141.8

Q ss_pred             ceEEEccCCCcc-----cccccccCCCCCcEEEccCCCCCCCCC----C--CCCCCCccEEEeeCcccCc----cccccc
Q 043408            2 LVSLEMPHSSIK-----QLWKGVQRLVNLKHLNLSHSEHLTKIP----D--LSLATNLESLTFRGCTSLL----ETHSSI   66 (492)
Q Consensus         2 L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~p----~--l~~~~nL~~L~L~~c~~l~----~~~~si   66 (492)
                      |++|+|++|+|.     .++..+..+++|++|+|++|.+....+    .  ....++|++|+|++|....    .++..+
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  166 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL  166 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence            444455544444     233444444555555555444321100    0  1123345555555543222    123334


Q ss_pred             cCCcCCcEEeccCCCCCcc-----cCCcc--CCCCCCEEEeeCCCCCc----ccCccccCCCCCcEEEcccCCCCCc---
Q 043408           67 QYLNKLIVLNLEHCRSLTS-----LSTSI--HLESLKTLILSGCSNLM----KLPSSIERLSSLILLNLRNCSRLEG---  132 (492)
Q Consensus        67 ~~L~~L~~L~L~~~~~l~~-----lp~~~--~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~L~~~~~l~~---  132 (492)
                      ..+++|+.|++++|. +..     +...+  ..++|++|++++|....    .++..+..+++|++|++++|.....   
T Consensus       167 ~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          167 RAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             hhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            445666666666654 221     11111  24466677776654332    1455566677777777777654332   


Q ss_pred             -c-ccccCCCCCCCEEeccCCCCCCC----cccccCCccccccccccccccccc-----ccccc-cCCCCcccccCCCcC
Q 043408          133 -L-PSKICKLKSLERLNLSGCSNLQR----LPNELGNLEALKELKAEGIAIREV-----PSSIV-CLKNLGRLSFESFKE  200 (492)
Q Consensus       133 -l-p~~i~~l~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~l~~~~i~~l-----p~~~~-~l~~L~~L~l~~~~~  200 (492)
                       + +.....+++|++|++++|.....    ++..+..+++|++|++++|.+...     ...+. ..++|+.|++++|.-
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence             1 12223467777777777643322    555666677777777777776522     11111 225777777777651


Q ss_pred             -------CccccCCCCCCcEEecCCCccccc-chhhh----c-Cccccccccccccccc----cCCCC---Ccccceeec
Q 043408          201 -------LPECLGQLSSLRILFLDKNNFERI-PESII----C-LSHLYWLRISYCERLK----SLPEL---PCDLSDIEA  260 (492)
Q Consensus       201 -------lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~----~-l~~L~~L~L~~c~~l~----~lp~l---~~sL~~L~~  260 (492)
                             ++..+..+++|+.|+|++|.++.. +..+.    . .++|+.|++++|..-.    .+|..   .++|++|++
T Consensus       326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l  405 (461)
T 1z7x_W          326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL  405 (461)
T ss_dssp             BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred             chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence                   345566778889999998887632 22332    2 6788899998885332    44442   467888888


Q ss_pred             cccc
Q 043408          261 HCCS  264 (492)
Q Consensus       261 ~~C~  264 (492)
                      .+|.
T Consensus       406 ~~N~  409 (461)
T 1z7x_W          406 SNNC  409 (461)
T ss_dssp             CSSS
T ss_pred             CCCC
Confidence            8763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.76  E-value=1e-17  Score=168.53  Aligned_cols=231  Identities=19%  Similarity=0.214  Sum_probs=181.4

Q ss_pred             cEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCCCCcccCCcc--CCCCCCEEEee
Q 043408           26 KHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKTLILS  101 (492)
Q Consensus        26 ~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L~  101 (492)
                      +.++.++++ ++.+|. +  .+++++|+|++| .+..+|. .+..+++|++|+|++|..++.++...  ++++|+++...
T Consensus        12 ~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESK-VTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTT-CCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCC-CCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            577888766 456664 4  478999999996 4667775 57899999999999998777777644  78998887666


Q ss_pred             CCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc-cCCc-cccccccccccccc
Q 043408          102 GCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE-LGNL-EALKELKAEGIAIR  178 (492)
Q Consensus       102 ~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l-~~L~~L~l~~~~i~  178 (492)
                      +++.+..++ ..+..+++|++|++++|......+..+....++..|++.++..+..++.. +..+ ..++.|++++|+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            666777774 56899999999999999876655556667778999999888888777653 4554 46899999999999


Q ss_pred             ccccccccCCCCcccccCCCc---CCcc-ccCCCCCCcEEecCCCcccccchhhhcCccccccccccccccccCCCC--C
Q 043408          179 EVPSSIVCLKNLGRLSFESFK---ELPE-CLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPEL--P  252 (492)
Q Consensus       179 ~lp~~~~~l~~L~~L~l~~~~---~lp~-~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~  252 (492)
                      ++|..+....+|+.|.+.++.   .+|. .+..+++|+.|+|++|+++.+|..  .+.+|+.|.+.+|..++.+|.+  .
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l  245 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKL  245 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTC
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhC
Confidence            999988888899999997654   4665 568999999999999999999863  3566777777777888888864  3


Q ss_pred             cccceeeccc
Q 043408          253 CDLSDIEAHC  262 (492)
Q Consensus       253 ~sL~~L~~~~  262 (492)
                      ++|+.+++.+
T Consensus       246 ~~L~~l~l~~  255 (350)
T 4ay9_X          246 VALMEASLTY  255 (350)
T ss_dssp             CSCCEEECSC
T ss_pred             cChhhCcCCC
Confidence            5667666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.75  E-value=2.9e-20  Score=193.65  Aligned_cols=264  Identities=21%  Similarity=0.189  Sum_probs=170.6

Q ss_pred             CceEEEccCCCccccc--ccccCCCCCcEEEccCCCCCCC----CCC-CCCCCCccEEEeeCcccCccccccc-cCCc--
Q 043408            1 NLVSLEMPHSSIKQLW--KGVQRLVNLKHLNLSHSEHLTK----IPD-LSLATNLESLTFRGCTSLLETHSSI-QYLN--   70 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~--~~~~~l~~L~~L~Ls~~~~l~~----~p~-l~~~~nL~~L~L~~c~~l~~~~~si-~~L~--   70 (492)
                      +|++|+|+++++....  ..+..+++|++|+|++|.+...    ++. +..+++|++|+|++|......+..+ ..+.  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            3688888888887543  3367788888888888875422    232 5667888888888876433333233 2344  


Q ss_pred             --CCcEEeccCCCCCc----ccCCcc-CCCCCCEEEeeCCCCCcccCccc-----cCCCCCcEEEcccCCCCCc----cc
Q 043408           71 --KLIVLNLEHCRSLT----SLSTSI-HLESLKTLILSGCSNLMKLPSSI-----ERLSSLILLNLRNCSRLEG----LP  134 (492)
Q Consensus        71 --~L~~L~L~~~~~l~----~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i-----~~l~~L~~L~L~~~~~l~~----lp  134 (492)
                        +|++|++++|..-.    .++..+ .+++|++|++++|......+..+     ...++|++|++++|.....    ++
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence              68888888876321    334444 67888888888876332222222     2356788888888866552    35


Q ss_pred             cccCCCCCCCEEeccCCCCCCCcccccC-----Ccccccccccccccccc-----cccccccCCCCcccccCCCcC----
Q 043408          135 SKICKLKSLERLNLSGCSNLQRLPNELG-----NLEALKELKAEGIAIRE-----VPSSIVCLKNLGRLSFESFKE----  200 (492)
Q Consensus       135 ~~i~~l~~L~~L~Ls~c~~l~~lp~~l~-----~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~----  200 (492)
                      ..+..+++|++|++++|......+..+.     ..++|+.|++++|.+..     ++..+..+++|++|+++++.-    
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  243 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  243 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence            5566678888888888764322222221     24578888888887775     566677788888888888751    


Q ss_pred             ---C-ccccCCCCCCcEEecCCCcccc-----cchhhhcCccccccccccccccc----cC----CCCCcccceeecccc
Q 043408          201 ---L-PECLGQLSSLRILFLDKNNFER-----IPESIICLSHLYWLRISYCERLK----SL----PELPCDLSDIEAHCC  263 (492)
Q Consensus       201 ---l-p~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~c~~l~----~l----p~l~~sL~~L~~~~C  263 (492)
                         + +.....+++|+.|++++|.++.     ++..+..+++|+.|++++|..-.    .+    ....++|+.|++.+|
T Consensus       244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence               1 1122357788888888888774     67777778888888888874211    11    112257788887777


Q ss_pred             c
Q 043408          264 S  264 (492)
Q Consensus       264 ~  264 (492)
                      .
T Consensus       324 ~  324 (461)
T 1z7x_W          324 S  324 (461)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.74  E-value=5.7e-18  Score=167.45  Aligned_cols=217  Identities=21%  Similarity=0.179  Sum_probs=167.5

Q ss_pred             ceEEEccCCCccc--ccc--cccCCCCCcEEEccCCCCCCCCCC-C--CCCCCccEEEeeCcccCcccc----ccccCCc
Q 043408            2 LVSLEMPHSSIKQ--LWK--GVQRLVNLKHLNLSHSEHLTKIPD-L--SLATNLESLTFRGCTSLLETH----SSIQYLN   70 (492)
Q Consensus         2 L~~L~L~~s~i~~--l~~--~~~~l~~L~~L~Ls~~~~l~~~p~-l--~~~~nL~~L~L~~c~~l~~~~----~si~~L~   70 (492)
                      ++.|.+.+..+..  +..  ....+++|++|+|++|.+....|. +  ..+++|++|+|++|......+    ..+..++
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  145 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP  145 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence            5677777777652  211  122357799999999998777765 5  889999999999987665443    3445789


Q ss_pred             CCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcc--cC--ccccCCCCCcEEEcccCCCCCcccc----ccCCCC
Q 043408           71 KLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMK--LP--SSIERLSSLILLNLRNCSRLEGLPS----KICKLK  141 (492)
Q Consensus        71 ~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~--lp--~~i~~l~~L~~L~L~~~~~l~~lp~----~i~~l~  141 (492)
                      +|++|++++|......+..+ .+++|++|++++|.....  ++  ..++.+++|++|+|++|... .++.    .+..++
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~  224 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGV  224 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTC
T ss_pred             CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCC
Confidence            99999999987433333444 899999999999865542  32  33578999999999998764 3333    246789


Q ss_pred             CCCEEeccCCCCCCCcccccCCc---ccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEec
Q 043408          142 SLERLNLSGCSNLQRLPNELGNL---EALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFL  216 (492)
Q Consensus       142 ~L~~L~Ls~c~~l~~lp~~l~~l---~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L  216 (492)
                      +|++|+|++|...+..|..++.+   ++|+.|++++|.++.+|..+.  ++|+.|++++|.  .+|. +..+++|+.|+|
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L  301 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTL  301 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEEC
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEEC
Confidence            99999999987777668777776   699999999999999998775  899999999986  3444 688999999999


Q ss_pred             CCCccc
Q 043408          217 DKNNFE  222 (492)
Q Consensus       217 ~~n~l~  222 (492)
                      ++|+++
T Consensus       302 ~~N~l~  307 (310)
T 4glp_A          302 DGNPFL  307 (310)
T ss_dssp             SSTTTS
T ss_pred             cCCCCC
Confidence            999976

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=6.6e-17  Score=154.80  Aligned_cols=173  Identities=23%  Similarity=0.224  Sum_probs=116.4

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      .+++++++++++.+|.++.  ++|+.|+|++|.+....+. +.++++|++|+|++|......+..+..+++|++|++++|
T Consensus        16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            3567888888888887665  5788888888877665553 777888888888886655555555777888888888876


Q ss_pred             CCCcccCCcc--CCCCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCc
Q 043408           81 RSLTSLSTSI--HLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRL  157 (492)
Q Consensus        81 ~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l  157 (492)
                      . +..++...  .+++|++|++++|. +..++. .+..+++|++|+|++|...+..+..+..+++|++|+|++|...+..
T Consensus        94 ~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           94 Q-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             c-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            6 44554332  67777777777753 344444 3566777777777776555444445667777777777776544444


Q ss_pred             ccccCCccccccccccccccc
Q 043408          158 PNELGNLEALKELKAEGIAIR  178 (492)
Q Consensus       158 p~~l~~l~~L~~L~l~~~~i~  178 (492)
                      +..+..+++|+.|++++|.+.
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBC
T ss_pred             HHHHhCCCCCCEEEeeCCcee
Confidence            445666677777777766654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.73  E-value=3.4e-17  Score=176.66  Aligned_cols=135  Identities=22%  Similarity=0.224  Sum_probs=65.5

Q ss_pred             ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccc-ccccCCcCCcEEecc
Q 043408            2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETH-SSIQYLNKLIVLNLE   78 (492)
Q Consensus         2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~-~si~~L~~L~~L~L~   78 (492)
                      +++|+|++|+|+.++ ..+..+++|++|+|++|.+....++ |.++++|++|+|++|. +..+| ..+..+.+|++|+|+
T Consensus        54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECT
T ss_pred             CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECC
Confidence            455555555555554 3455555555555555544332232 5555555555555543 33333 234555555555555


Q ss_pred             CCCCCcccCCc-c-CCCCCCEEEeeCCCCCc-ccCccccCCCCCcEEEcccCCCCCccccccC
Q 043408           79 HCRSLTSLSTS-I-HLESLKTLILSGCSNLM-KLPSSIERLSSLILLNLRNCSRLEGLPSKIC  138 (492)
Q Consensus        79 ~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~  138 (492)
                      +|. ++.++.. + ++++|++|++++|.... .+|..++.+++|++|++++|...+..+..+.
T Consensus       133 ~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~  194 (635)
T 4g8a_A          133 ETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  194 (635)
T ss_dssp             TSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             CCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence            543 3444332 2 45555555555543221 2344455555555555555554444444333

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.72  E-value=2.6e-19  Score=181.17  Aligned_cols=239  Identities=15%  Similarity=0.113  Sum_probs=164.4

Q ss_pred             EEEccCCCcccc-cccccCCCCCcEEEccCCCCCCCCC-----CCCCCC-CccEEEeeCcccCccccccccCC-----cC
Q 043408            4 SLEMPHSSIKQL-WKGVQRLVNLKHLNLSHSEHLTKIP-----DLSLAT-NLESLTFRGCTSLLETHSSIQYL-----NK   71 (492)
Q Consensus         4 ~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-----~l~~~~-nL~~L~L~~c~~l~~~~~si~~L-----~~   71 (492)
                      .++++++++... +..+...++|++|+|++|.+....+     .+..++ +|++|+|++|......+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            578899999854 4555556669999999998655443     266777 89999999987665556566554     89


Q ss_pred             CcEEeccCCCCCcccCCc-----c-CC-CCCCEEEeeCCCCCcccCcc----ccC-CCCCcEEEcccCCCCC----cccc
Q 043408           72 LIVLNLEHCRSLTSLSTS-----I-HL-ESLKTLILSGCSNLMKLPSS----IER-LSSLILLNLRNCSRLE----GLPS  135 (492)
Q Consensus        72 L~~L~L~~~~~l~~lp~~-----~-~l-~~L~~L~L~~c~~l~~lp~~----i~~-l~~L~~L~L~~~~~l~----~lp~  135 (492)
                      |++|+|++|. +...+..     + .+ ++|++|++++|......+..    +.. .++|++|+|++|....    .++.
T Consensus        82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            9999999987 4433221     1 34 79999999997643322222    344 3699999999987664    3444


Q ss_pred             ccCCCC-CCCEEeccCCCCCCCcccc----cCCc-ccccccccccccccc-----cccccccC-CCCcccccCCCcC---
Q 043408          136 KICKLK-SLERLNLSGCSNLQRLPNE----LGNL-EALKELKAEGIAIRE-----VPSSIVCL-KNLGRLSFESFKE---  200 (492)
Q Consensus       136 ~i~~l~-~L~~L~Ls~c~~l~~lp~~----l~~l-~~L~~L~l~~~~i~~-----lp~~~~~l-~~L~~L~l~~~~~---  200 (492)
                      .+..++ +|++|+|++|......+..    +..+ ++|+.|++++|.+..     ++..+..+ ++|+.|++++|.-   
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            455555 8999999998655544433    3344 589999999998886     66666553 4788888877652   


Q ss_pred             ----CccccCCCCCCcEEecCCCccc--------ccchhhhcCcccccccccccc
Q 043408          201 ----LPECLGQLSSLRILFLDKNNFE--------RIPESIICLSHLYWLRISYCE  243 (492)
Q Consensus       201 ----lp~~l~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~L~~c~  243 (492)
                          +...+..+++|+.|+|++|.+.        .++..+..+++|+.|++++|+
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence                1233466777888888887733        334445566777777777765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=8.5e-19  Score=178.72  Aligned_cols=225  Identities=15%  Similarity=0.123  Sum_probs=177.2

Q ss_pred             CceEEEccCCCccc-----ccccccCCCCCcEEEccCCCCCC---CCCC--------CCCCCCccEEEeeCcccCc----
Q 043408            1 NLVSLEMPHSSIKQ-----LWKGVQRLVNLKHLNLSHSEHLT---KIPD--------LSLATNLESLTFRGCTSLL----   60 (492)
Q Consensus         1 nL~~L~L~~s~i~~-----l~~~~~~l~~L~~L~Ls~~~~l~---~~p~--------l~~~~nL~~L~L~~c~~l~----   60 (492)
                      +|++|+|++|+|..     +...+..+++|++|+|++|....   .+|.        +..+++|++|+|++|....    
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence            58999999999984     44568889999999999975432   2332        3688999999999987665    


Q ss_pred             cccccccCCcCCcEEeccCCCCCc----ccCCcc-CC---------CCCCEEEeeCCCCC-cccC---ccccCCCCCcEE
Q 043408           61 ETHSSIQYLNKLIVLNLEHCRSLT----SLSTSI-HL---------ESLKTLILSGCSNL-MKLP---SSIERLSSLILL  122 (492)
Q Consensus        61 ~~~~si~~L~~L~~L~L~~~~~l~----~lp~~~-~l---------~~L~~L~L~~c~~l-~~lp---~~i~~l~~L~~L  122 (492)
                      .++..+..+++|++|+|++|..-.    .++..+ .+         ++|++|++++|... ..++   ..+..+++|++|
T Consensus       113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  192 (386)
T 2ca6_A          113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  192 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence            477788999999999999987321    122211 33         89999999998654 3444   467889999999


Q ss_pred             EcccCCCCC-----ccccccCCCCCCCEEeccCCCCC----CCcccccCCcccccccccccccccc-----cccccc--c
Q 043408          123 NLRNCSRLE-----GLPSKICKLKSLERLNLSGCSNL----QRLPNELGNLEALKELKAEGIAIRE-----VPSSIV--C  186 (492)
Q Consensus       123 ~L~~~~~l~-----~lp~~i~~l~~L~~L~Ls~c~~l----~~lp~~l~~l~~L~~L~l~~~~i~~-----lp~~~~--~  186 (492)
                      ++++|....     ..|..+..+++|+.|+|++|...    ..+|..+..+++|+.|++++|.+..     ++..+.  .
T Consensus       193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  272 (386)
T 2ca6_A          193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  272 (386)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence            999997652     24447889999999999998753    6678888999999999999999874     466664  4


Q ss_pred             CCCCcccccCCCc-------CCcccc-CCCCCCcEEecCCCcccccc
Q 043408          187 LKNLGRLSFESFK-------ELPECL-GQLSSLRILFLDKNNFERIP  225 (492)
Q Consensus       187 l~~L~~L~l~~~~-------~lp~~l-~~l~~L~~L~L~~n~l~~lp  225 (492)
                      +++|+.|++++|.       .+|..+ .++++|+.|++++|.++...
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            8999999999986       266666 66899999999999998544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.71  E-value=1.2e-16  Score=170.49  Aligned_cols=182  Identities=23%  Similarity=0.262  Sum_probs=110.4

Q ss_pred             CCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeC
Q 043408           24 NLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSG  102 (492)
Q Consensus        24 ~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~  102 (492)
                      +|+.|+|++|.+.. +|. +  .++|++|+|++|. +..+|   ..+++|++|++++|. +..+|. +. .+|++|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~-~~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LP-ASLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CC-TTCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hh-cCCCEEECCC
Confidence            67777777776543 544 3  3677777777754 34566   446777777777764 555666 31 2777888877


Q ss_pred             CCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccccccc
Q 043408          103 CSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPS  182 (492)
Q Consensus       103 c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~  182 (492)
                      |. +..+|.   .+++|++|+|++|...+ +|.   .+++|++|+|++|.. +.+|. +.  ++|+.|++++|.++.+|.
T Consensus       130 N~-l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L-~~lp~-l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          130 NQ-LTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL-TFLPE-LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             SC-CSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC-SCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred             Cc-CCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC-CCcch-hh--CCCCEEECcCCCCCchhh
Confidence            53 444666   57778888888776544 555   467788888887643 34766 55  778888888888877776


Q ss_pred             ccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCccccccccccccc
Q 043408          183 SIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCER  244 (492)
Q Consensus       183 ~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~  244 (492)
                       +..  +|              ....+.|+.|+|++|.++.+|..+..+++|+.|+|++|+.
T Consensus       198 -~~~--~L--------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          198 -VPV--RN--------------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             -CC------------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             -HHH--hh--------------hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence             332  33              0112223455555555555555444455555555555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.70  E-value=5.2e-16  Score=148.53  Aligned_cols=177  Identities=20%  Similarity=0.211  Sum_probs=124.1

Q ss_pred             CCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCc-c-CCCCCCEEE
Q 043408           23 VNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTS-I-HLESLKTLI   99 (492)
Q Consensus        23 ~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~   99 (492)
                      ...+.++++++.+. .+|. +.  ++|++|+|++|......+..+..+++|++|+|++|. +..++.. + .+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEE
Confidence            46788999887654 4553 33  688999999877666666678888899999998876 4444432 3 678888888


Q ss_pred             eeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccc
Q 043408          100 LSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIRE  179 (492)
Q Consensus       100 L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~  179 (492)
                      +++|......+..+..+++|++|+|++|...+..+..+..+++|++|+|++|...+..+..++.+++|+.|++++|.+..
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            88865443333456778888888888876654444456777788888887764443333357777777777777777766


Q ss_pred             cccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccc
Q 043408          180 VPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFER  223 (492)
Q Consensus       180 lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~  223 (492)
                      ++.                    ..+..+++|+.|+|++|.++.
T Consensus       170 ~~~--------------------~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          170 VPH--------------------GAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCT--------------------TTTTTCTTCCEEECCSCCBCT
T ss_pred             cCH--------------------HHHhCCCCCCEEEeeCCceeC
Confidence            543                    345678889999999998763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.67  E-value=1.3e-16  Score=156.53  Aligned_cols=169  Identities=22%  Similarity=0.311  Sum_probs=95.8

Q ss_pred             cCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEE
Q 043408           20 QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLI   99 (492)
Q Consensus        20 ~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~   99 (492)
                      ..+++|+.|++++|.+ ..++.+..+++|++|+|++|.. ..++. +..+++|++|++++|. +..++.           
T Consensus        43 ~~l~~L~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-----------  107 (291)
T 1h6t_A           43 NELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENK-VKDLSS-----------  107 (291)
T ss_dssp             HHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCCGGG-----------
T ss_pred             hhcCcccEEEccCCCc-ccChhHhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCc-CCCChh-----------
Confidence            3456666666666543 3345555566666666665432 22332 5555555555555543 333333           


Q ss_pred             eeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccc
Q 043408          100 LSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIRE  179 (492)
Q Consensus       100 L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~  179 (492)
                                   +..+++|++|++++|.... + ..+..+++|+.|++++|... .+ ..++.+++|+.|++++|.+..
T Consensus       108 -------------l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          108 -------------LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             -------------GTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCC
T ss_pred             -------------hccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEccCCcccc
Confidence                         4445555555555544332 2 23455566666666654332 23 345666667777777766665


Q ss_pred             cccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCcccccccccccc
Q 043408          180 VPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCE  243 (492)
Q Consensus       180 lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~  243 (492)
                      ++.                      +..+++|+.|++++|.++.++. +..+++|+.|++++|+
T Consensus       171 ~~~----------------------l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          171 IVP----------------------LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CGG----------------------GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             chh----------------------hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence            432                      3456677777777777777764 7777777777777765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.67  E-value=6.8e-16  Score=151.28  Aligned_cols=170  Identities=26%  Similarity=0.338  Sum_probs=137.6

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|++++++++.++ ++..+++|++|+|++|.+.. ++.+..+++|++|+|++|. +..++ .+..+++|++|++++|
T Consensus        47 ~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n  122 (291)
T 1h6t_A           47 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEHN  122 (291)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECTTS
T ss_pred             cccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCC-CcccccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEECCCC
Confidence            5889999999999885 58889999999999998755 4449999999999999975 44454 4899999999999998


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                      . +..++....+++|+.|++++|. +..+ ..+..+++|++|++++|...+..+  +..+++|+.|++++| .+..++. 
T Consensus       123 ~-i~~~~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~i~~l~~-  195 (291)
T 1h6t_A          123 G-ISDINGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HISDLRA-  195 (291)
T ss_dssp             C-CCCCGGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCBCGG-
T ss_pred             c-CCCChhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-cCCCChh-
Confidence            6 6666655589999999999965 4444 678889999999999887655433  888899999999886 4455654 


Q ss_pred             cCCcccccccccccccccccc
Q 043408          161 LGNLEALKELKAEGIAIREVP  181 (492)
Q Consensus       161 l~~l~~L~~L~l~~~~i~~lp  181 (492)
                      +..+++|+.|++++|.+...|
T Consensus       196 l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          196 LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             GTTCTTCSEEEEEEEEEECCC
T ss_pred             hccCCCCCEEECcCCcccCCc
Confidence            788888888888888877654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.65  E-value=2.6e-15  Score=139.32  Aligned_cols=174  Identities=20%  Similarity=0.150  Sum_probs=133.3

Q ss_pred             eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCC
Q 043408            3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHC   80 (492)
Q Consensus         3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~   80 (492)
                      +.++..+++++.+|.++  .++|++|++++|.+....+. ++.+++|++|+|++|... .++. .+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCC
Confidence            35778888888888665  46899999999987654444 788999999999997544 5554 4678999999999998


Q ss_pred             CCCcccCCcc--CCCCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCc
Q 043408           81 RSLTSLSTSI--HLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRL  157 (492)
Q Consensus        81 ~~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l  157 (492)
                      . ++.++...  ++++|++|++++|. +..++. .+..+++|++|++++|...+..+..+..+++|+.|++++|...   
T Consensus        87 ~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---  161 (208)
T 2o6s_A           87 Q-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---  161 (208)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred             c-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence            6 66666543  78999999999965 444544 4788999999999998776555556788999999999997443   


Q ss_pred             ccccCCccccccccccccccc-ccccccccCC
Q 043408          158 PNELGNLEALKELKAEGIAIR-EVPSSIVCLK  188 (492)
Q Consensus       158 p~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~  188 (492)
                          +.+++|+.|+++.|.+. .+|..++.++
T Consensus       162 ----~~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          162 ----CTCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             ----CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             ----cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence                44567888888888777 6776655443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.64  E-value=4.3e-18  Score=172.17  Aligned_cols=222  Identities=17%  Similarity=0.160  Sum_probs=167.2

Q ss_pred             CceEEEccCCCccccc-----ccccCCC-CCcEEEccCCCCCCCCCC-CCCC-----CCccEEEeeCcccCcccccc---
Q 043408            1 NLVSLEMPHSSIKQLW-----KGVQRLV-NLKHLNLSHSEHLTKIPD-LSLA-----TNLESLTFRGCTSLLETHSS---   65 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-----~~~~~l~-~L~~L~Ls~~~~l~~~p~-l~~~-----~nL~~L~L~~c~~l~~~~~s---   65 (492)
                      +|++|+|++|++...+     ..+..++ +|++|+|++|.+....+. +..+     ++|++|+|++|......+..   
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            4899999999999765     5677888 999999999987655432 4443     99999999998765555543   


Q ss_pred             -ccCC-cCCcEEeccCCCCCcccCCc-----c-C-CCCCCEEEeeCCCCCc----ccCccccCCC-CCcEEEcccCCCCC
Q 043408           66 -IQYL-NKLIVLNLEHCRSLTSLSTS-----I-H-LESLKTLILSGCSNLM----KLPSSIERLS-SLILLNLRNCSRLE  131 (492)
Q Consensus        66 -i~~L-~~L~~L~L~~~~~l~~lp~~-----~-~-l~~L~~L~L~~c~~l~----~lp~~i~~l~-~L~~L~L~~~~~l~  131 (492)
                       +..+ ++|+.|++++|. +...+..     + . .++|++|++++|....    .++..+..++ +|++|+|++|....
T Consensus       103 ~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence             3444 899999999987 4444321     1 2 4699999999975443    4455566666 99999999998766


Q ss_pred             ccccc----cCCC-CCCCEEeccCCCCCCC----cccccCC-cccccccccccccccccc-----cccccCCCCcccccC
Q 043408          132 GLPSK----ICKL-KSLERLNLSGCSNLQR----LPNELGN-LEALKELKAEGIAIREVP-----SSIVCLKNLGRLSFE  196 (492)
Q Consensus       132 ~lp~~----i~~l-~~L~~L~Ls~c~~l~~----lp~~l~~-l~~L~~L~l~~~~i~~lp-----~~~~~l~~L~~L~l~  196 (492)
                      ..+..    +... ++|++|+|++|.....    ++..+.. .++|+.|++++|.+...+     ..+..+++|+.|+++
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            55543    3344 6999999999864432    5555555 458999999999987543     345778999999999


Q ss_pred             CCc----------CCccccCCCCCCcEEecCCCcccc
Q 043408          197 SFK----------ELPECLGQLSSLRILFLDKNNFER  223 (492)
Q Consensus       197 ~~~----------~lp~~l~~l~~L~~L~L~~n~l~~  223 (492)
                      +|.          .++..+..+++|+.|++++|.+..
T Consensus       262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            886          244567889999999999999873

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.64  E-value=1.3e-15  Score=162.57  Aligned_cols=175  Identities=23%  Similarity=0.276  Sum_probs=104.2

Q ss_pred             CCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccC
Q 043408           71 KLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSG  150 (492)
Q Consensus        71 ~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~  150 (492)
                      +|+.|++++|. +..+|..+ +++|++|++++|. +..+|   ..+++|++|++++|...+ +|. +..  +|++|++++
T Consensus        60 ~L~~L~Ls~n~-L~~lp~~l-~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLN-LSSLPDNL-PPQITVLEITQNA-LISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSC-CSCCCSCC-CTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCC-CCccCHhH-cCCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence            45555555543 44444433 2455555555532 33444   334555666665554433 444 333  566666665


Q ss_pred             CCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhh
Q 043408          151 CSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESI  228 (492)
Q Consensus       151 c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l  228 (492)
                      |... .+|.   .+++|+.|++++|.++.+|.   .+++|+.|++++|.  .+|. +.  ++|+.|+|++|.++.+|. +
T Consensus       130 N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~  198 (571)
T 3cvr_A          130 NQLT-MLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-V  198 (571)
T ss_dssp             SCCS-CCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-C
T ss_pred             CcCC-CCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-H
Confidence            4332 2544   45566666666666666554   45566666666654  3555 44  899999999999999987 5


Q ss_pred             hcCccc-------cccccccccccccCCCC---Ccccceeecccccccccc
Q 043408          229 ICLSHL-------YWLRISYCERLKSLPEL---PCDLSDIEAHCCSSLEAL  269 (492)
Q Consensus       229 ~~l~~L-------~~L~L~~c~~l~~lp~l---~~sL~~L~~~~C~~L~~l  269 (492)
                      ..  +|       +.|++++| .++.+|..   .++|+.|++.+++--..+
T Consensus       199 ~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          199 PV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             C----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred             HH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence            54  77       99999997 56788863   467888888887543333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.64  E-value=5.3e-16  Score=166.96  Aligned_cols=180  Identities=21%  Similarity=0.270  Sum_probs=122.5

Q ss_pred             EEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCc
Q 043408            5 LEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLT   84 (492)
Q Consensus         5 L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~   84 (492)
                      +++..+.+..+. .+..+++|+.|++++|.+ ..++.+..+++|++|+|++|.. ..+++ +..+++|+.|+|++|. +.
T Consensus        26 l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N~-l~  100 (605)
T 1m9s_A           26 DNLKKKSVTDAV-TQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENK-IK  100 (605)
T ss_dssp             HHTTCSCTTSEE-CHHHHTTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTSCC-CCCGG-GGGCTTCCEEECCSSC-CC
T ss_pred             HhccCCCccccc-chhcCCCCCEEECcCCCC-CCChHHccCCCCCEEEeeCCCC-CCChh-hccCCCCCEEECcCCC-CC
Confidence            344555555543 245678888888888764 4567788888888888888653 34444 7788888888888875 66


Q ss_pred             ccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCc
Q 043408           85 SLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNL  164 (492)
Q Consensus        85 ~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l  164 (492)
                      .++....+++|+.|+|++|. +..+ +.+..+++|+.|+|++|.....  ..+..+++|+.|+|++|...+..|  +..+
T Consensus       101 ~l~~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l  174 (605)
T 1m9s_A          101 DLSSLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL  174 (605)
T ss_dssp             CCTTSTTCTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             CChhhccCCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccC
Confidence            66654478888888888865 3334 4577888888888888765543  567778888888888765444333  7777


Q ss_pred             ccccccccccccccccccccccCCCCcccccC
Q 043408          165 EALKELKAEGIAIREVPSSIVCLKNLGRLSFE  196 (492)
Q Consensus       165 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~  196 (492)
                      ++|+.|+|++|.+..+| .+..+++|+.|++.
T Consensus       175 ~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~  205 (605)
T 1m9s_A          175 TKLQNLYLSKNHISDLR-ALAGLKNLDVLELF  205 (605)
T ss_dssp             TTCCEEECCSSCCCBCG-GGTTCTTCSEEECC
T ss_pred             CCCCEEECcCCCCCCCh-HHccCCCCCEEEcc
Confidence            88888888888777664 23333333333333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=1e-15  Score=140.93  Aligned_cols=153  Identities=17%  Similarity=0.182  Sum_probs=121.7

Q ss_pred             cCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEE
Q 043408           20 QRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTL   98 (492)
Q Consensus        20 ~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L   98 (492)
                      ..+++|+.|++++|.+. .+|.+..+++|++|++++| .+..+ +.+..+++|++|++++|......+..+ .+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            56788999999998765 6678888999999999998 44444 478889999999999987443344444 88999999


Q ss_pred             EeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccc
Q 043408           99 ILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR  178 (492)
Q Consensus        99 ~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~  178 (492)
                      ++++|......+..+..+++|++|++++|..++.+| .+..+++|+.|++++|.. ..++ .+..+++|+.|++++|.+.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-TGGGCSSCCEEEECBC---
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-HhccCCCCCEEEeeCcccC
Confidence            999987666678889999999999999988677776 688899999999999754 4455 6788899999999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.64  E-value=2.4e-17  Score=177.06  Aligned_cols=124  Identities=17%  Similarity=0.095  Sum_probs=59.2

Q ss_pred             CceEEEccCCCcc-----cccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccC---ccccccccCCcCC
Q 043408            1 NLVSLEMPHSSIK-----QLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSL---LETHSSIQYLNKL   72 (492)
Q Consensus         1 nL~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l---~~~~~si~~L~~L   72 (492)
                      +|++|+++++++.     .++..+..+++|+.|+|++|........+..+++|++|+++++...   ...+..+..+++|
T Consensus       193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L  272 (592)
T 3ogk_B          193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL  272 (592)
T ss_dssp             CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred             CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence            4677788777775     3344455677778887777654331112445555666655532222   1222334444455


Q ss_pred             cEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcc-cCccccCCCCCcEEEcc
Q 043408           73 IVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMK-LPSSIERLSSLILLNLR  125 (492)
Q Consensus        73 ~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~L~  125 (492)
                      +.|+++++. ...+|..+ .+++|++|++++|..... ++..+..+++|++|++.
T Consensus       273 ~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          273 CRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             cccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            555544421 22233322 344555555555441111 11223444455555444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=1e-15  Score=141.00  Aligned_cols=154  Identities=18%  Similarity=0.250  Sum_probs=98.7

Q ss_pred             CCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEE
Q 043408           43 SLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILL  122 (492)
Q Consensus        43 ~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L  122 (492)
                      +.+++|++|++++|. +..++ .+..+++|++|++++| .+..++....+++|++|++++|......+..+..+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            455677777777753 33555 5667777777777776 35555543467777777777755444456666777777777


Q ss_pred             EcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCc
Q 043408          123 NLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELP  202 (492)
Q Consensus       123 ~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp  202 (492)
                      ++++|......|..+..+++|++|++++|...+.+| .++.+++|+.|++++|.+..++                     
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---------------------  175 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR---------------------  175 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---------------------
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---------------------
Confidence            777766666566666677777777777765455555 4666666666666666665543                     


Q ss_pred             cccCCCCCCcEEecCCCccc
Q 043408          203 ECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       203 ~~l~~l~~L~~L~L~~n~l~  222 (492)
                       .+..+++|+.|++++|++.
T Consensus       176 -~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          176 -GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             -TGGGCSSCCEEEECBC---
T ss_pred             -HhccCCCCCEEEeeCcccC
Confidence             3456677778888877754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.62  E-value=2.4e-15  Score=161.90  Aligned_cols=171  Identities=26%  Similarity=0.322  Sum_probs=144.7

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|+++++.|..++ ++..+++|+.|+|++|.+.. ++.+..+++|++|+|++|. +..++ .+..+++|+.|+|++|
T Consensus        44 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N  119 (605)
T 1m9s_A           44 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHN  119 (605)
T ss_dssp             TCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTS
T ss_pred             CCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC-ChhhccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEecCC
Confidence            4788999999999986 68899999999999998654 4459999999999999975 44454 7899999999999998


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                      . +..++....+++|+.|+|++|. +..+ ..+..+++|+.|+|++|...+..|  +..+++|+.|+|++|.. ..++ .
T Consensus       120 ~-l~~l~~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i-~~l~-~  192 (605)
T 1m9s_A          120 G-ISDINGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-SDLR-A  192 (605)
T ss_dssp             C-CCCCGGGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-CBCG-G
T ss_pred             C-CCCCccccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC-CCCh-H
Confidence            7 6667665589999999999975 4445 678999999999999998766555  89999999999999754 4554 5


Q ss_pred             cCCccccccccccccccccccc
Q 043408          161 LGNLEALKELKAEGIAIREVPS  182 (492)
Q Consensus       161 l~~l~~L~~L~l~~~~i~~lp~  182 (492)
                      +..+++|+.|++++|.+...|.
T Consensus       193 l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             GTTCTTCSEEECCSEEEECCCC
T ss_pred             HccCCCCCEEEccCCcCcCCcc
Confidence            8899999999999999987664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.62  E-value=3.7e-17  Score=175.57  Aligned_cols=240  Identities=17%  Similarity=0.051  Sum_probs=149.7

Q ss_pred             CceEEEccCCCccc-----ccccccCCCCCcEEEccCCCCCCC----CCC-CCCCCCccEEEeeCcccCccccccccCCc
Q 043408            1 NLVSLEMPHSSIKQ-----LWKGVQRLVNLKHLNLSHSEHLTK----IPD-LSLATNLESLTFRGCTSLLETHSSIQYLN   70 (492)
Q Consensus         1 nL~~L~L~~s~i~~-----l~~~~~~l~~L~~L~Ls~~~~l~~----~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~   70 (492)
                      +|++|+|++|.+..     +......+++|+.|+|++|.+...    ++. +.++++|++|+|++|.. ..++..+..++
T Consensus       165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~  243 (592)
T 3ogk_B          165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAA  243 (592)
T ss_dssp             TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCT
T ss_pred             CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhh
Confidence            58999999998753     333456789999999999876521    222 45789999999999754 45778888999


Q ss_pred             CCcEEeccCCCCCc---ccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCc-cccccCCCCCCCE
Q 043408           71 KLIVLNLEHCRSLT---SLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEG-LPSKICKLKSLER  145 (492)
Q Consensus        71 ~L~~L~L~~~~~l~---~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~  145 (492)
                      +|+.|+++.+....   ..+..+ .+++|+.|+++++ ....+|..+..+++|++|++++|..... ++..+..+++|+.
T Consensus       244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~  322 (592)
T 3ogk_B          244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV  322 (592)
T ss_dssp             TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred             HHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence            99999998644331   122222 7889999999884 4566788888999999999999884332 2234577788888


Q ss_pred             EeccCCCCCCCcccccCCccccccccccc-----------cccc--ccccccccCCCCcccccCCCcC---CccccC-CC
Q 043408          146 LNLSGCSNLQRLPNELGNLEALKELKAEG-----------IAIR--EVPSSIVCLKNLGRLSFESFKE---LPECLG-QL  208 (492)
Q Consensus       146 L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~-----------~~i~--~lp~~~~~l~~L~~L~l~~~~~---lp~~l~-~l  208 (492)
                      |+++++.....++.....+++|++|++++           +.+.  .++.....+++|+.|++..+.-   .+..+. .+
T Consensus       323 L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~  402 (592)
T 3ogk_B          323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL  402 (592)
T ss_dssp             EEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC
T ss_pred             EeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC
Confidence            88874322223333345566677777762           3333  2223334456666666622210   111222 25


Q ss_pred             CCCcEEecC----CCcccc------cchhhhcCccccccccccc
Q 043408          209 SSLRILFLD----KNNFER------IPESIICLSHLYWLRISYC  242 (492)
Q Consensus       209 ~~L~~L~L~----~n~l~~------lp~~l~~l~~L~~L~L~~c  242 (492)
                      ++|+.|+++    .|.++.      ++..+..+++|+.|++++|
T Consensus       403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~  446 (592)
T 3ogk_B          403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR  446 (592)
T ss_dssp             CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred             CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence            555555554    333443      2223444555555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.60  E-value=1.5e-14  Score=134.16  Aligned_cols=117  Identities=20%  Similarity=0.235  Sum_probs=65.3

Q ss_pred             ccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcc
Q 043408          113 IERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGR  192 (492)
Q Consensus       113 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~  192 (492)
                      +..+++|++|++++|...+..+..+..+++|++|++++|...+..+..++.+++|+.|++++|.+..++.          
T Consensus        72 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----------  141 (208)
T 2o6s_A           72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD----------  141 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----------
T ss_pred             cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH----------
Confidence            3445555555555554433333334555556666665543333223335556666666666665554443          


Q ss_pred             cccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCccccccccccccccccCCCCCccc
Q 043408          193 LSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDL  255 (492)
Q Consensus       193 L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL  255 (492)
                                ..+..+++|+.|++++|.+.      ..+++|++|+++.|..-+.+|+...++
T Consensus       142 ----------~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          142 ----------GVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             ----------TTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             ----------HHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence                      22455677777777777654      234577777777777666777654444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=2.3e-15  Score=145.25  Aligned_cols=169  Identities=22%  Similarity=0.273  Sum_probs=133.0

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      ++.+++.+++++.++ .+..+++|++|++++|.+ +.++.+..+++|++|+|++|. +..++. +..+++|+.|++++|.
T Consensus        21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSC
T ss_pred             HHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccchHHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCc
Confidence            345677888888887 678899999999999865 467788899999999999864 555665 8899999999999986


Q ss_pred             CCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccccc
Q 043408           82 SLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL  161 (492)
Q Consensus        82 ~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l  161 (492)
                       ++.++.... ++|++|++++|. +..++ .+..+++|++|++++|...+ ++ .+..+++|+.|++++|.... + ..+
T Consensus        97 -l~~l~~~~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~-~-~~l  168 (263)
T 1xeu_A           97 -LKNLNGIPS-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN-T-GGL  168 (263)
T ss_dssp             -CSCCTTCCC-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB-C-TTS
T ss_pred             -cCCcCcccc-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc-h-HHh
Confidence             666776445 899999999964 44454 58889999999999887544 44 57888899999998875443 3 567


Q ss_pred             CCccccccccccccccccccc
Q 043408          162 GNLEALKELKAEGIAIREVPS  182 (492)
Q Consensus       162 ~~l~~L~~L~l~~~~i~~lp~  182 (492)
                      ..+++|+.|++++|.+...|.
T Consensus       169 ~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          169 TRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             TTCCCCCEEEEEEEEEECCCE
T ss_pred             ccCCCCCEEeCCCCcccCCcc
Confidence            888888888888888776553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.58  E-value=2.1e-14  Score=134.66  Aligned_cols=145  Identities=17%  Similarity=0.161  Sum_probs=76.8

Q ss_pred             EEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCC
Q 043408            4 SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRS   82 (492)
Q Consensus         4 ~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~   82 (492)
                      .+++++++++.+|..+.  ++|+.|+|++|.+....+ .+..+++|++|+|++|......|..+..+++|++|+|++|. 
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-   91 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-   91 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-
Confidence            45666677777765544  567777777766544333 36666777777777655444445566666666666666654 


Q ss_pred             CcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCC
Q 043408           83 LTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGC  151 (492)
Q Consensus        83 l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c  151 (492)
                      ++.+|...  .+++|++|++++|......|..+..+++|++|+|++|...+..+..+..+++|+.|++++|
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            44444432  4555555555554332222334444444444444444433333333444444444444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.57  E-value=5.2e-14  Score=132.79  Aligned_cols=145  Identities=24%  Similarity=0.255  Sum_probs=86.3

Q ss_pred             EEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCC
Q 043408            4 SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         4 ~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~   81 (492)
                      .++.+++++..+|.++.  ++|++|+|++|.+....|. +..+++|++|+|++|.. ..++. .+..+++|++|+|++|.
T Consensus        23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc
Confidence            46666677777766554  6777777777766555443 66677777777776543 44443 34666777777777664


Q ss_pred             CCcccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCC
Q 043408           82 SLTSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSN  153 (492)
Q Consensus        82 ~l~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~  153 (492)
                       ++.++...  .+++|++|++++| .+..+|..+..+++|++|+|++|......+..+..+++|+.|++++|..
T Consensus       100 -l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          100 -LTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             -CCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             -CCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence             44444432  5666666666664 3445666666666666666666554433334455566666666665543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.57  E-value=9.6e-17  Score=172.28  Aligned_cols=199  Identities=21%  Similarity=0.208  Sum_probs=95.2

Q ss_pred             CCCCccEEEeeCcccCcccccccc-CCcCCcEEeccCCCCCcc--cCCcc-CCCCCCEEEeeCCCCCcc----cCccccC
Q 043408           44 LATNLESLTFRGCTSLLETHSSIQ-YLNKLIVLNLEHCRSLTS--LSTSI-HLESLKTLILSGCSNLMK----LPSSIER  115 (492)
Q Consensus        44 ~~~nL~~L~L~~c~~l~~~~~si~-~L~~L~~L~L~~~~~l~~--lp~~~-~l~~L~~L~L~~c~~l~~----lp~~i~~  115 (492)
                      .+++|++|+|++|......+..+. .+++|++|++++|..+..  ++... ++++|++|++++|.....    ++.....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            345666666666654333333343 456666666666643332  33222 466666666666542111    2222235


Q ss_pred             CCCCcEEEcccCC-CCC--ccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccc-------ccccccccccc
Q 043408          116 LSSLILLNLRNCS-RLE--GLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEG-------IAIREVPSSIV  185 (492)
Q Consensus       116 l~~L~~L~L~~~~-~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~-------~~i~~lp~~~~  185 (492)
                      +++|++|++++|. ...  .++..+..+++|++|++++|...+.++..++.+++|+.|++++       +.+..++..+.
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~  262 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS  262 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence            5566666666654 110  1112223356666666666644444555555556666665332       22334444445


Q ss_pred             cCCCCccc-ccCCCc--CCccccCCCCCCcEEecCCCccc--ccchhhhcCccccccccccc
Q 043408          186 CLKNLGRL-SFESFK--ELPECLGQLSSLRILFLDKNNFE--RIPESIICLSHLYWLRISYC  242 (492)
Q Consensus       186 ~l~~L~~L-~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c  242 (492)
                      ++++|+.| .+.+..  .++..+..+++|+.|+|++|.++  .+...+..+++|+.|++++|
T Consensus       263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            55555554 222211  13333334455555555555543  12223444555555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.55  E-value=3.6e-14  Score=133.13  Aligned_cols=131  Identities=15%  Similarity=0.114  Sum_probs=72.5

Q ss_pred             CccEEEeeCcccCcccc-ccccCCcCCcEEeccCCCCCcccCC-cc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEE
Q 043408           47 NLESLTFRGCTSLLETH-SSIQYLNKLIVLNLEHCRSLTSLST-SI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLN  123 (492)
Q Consensus        47 nL~~L~L~~c~~l~~~~-~si~~L~~L~~L~L~~~~~l~~lp~-~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~  123 (492)
                      .+++|+|++|......+ ..+..+++|++|+|++|. ++.++. .+ ++++|++|++++|......+..+.++++|++|+
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            34455555533222212 124455555555555544 333332 22 555666666666443333333466666666666


Q ss_pred             cccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccc
Q 043408          124 LRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR  178 (492)
Q Consensus       124 L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~  178 (492)
                      |++|...+..|..+..+++|++|+|++|...+..|..++.+++|+.|++++|.+.
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            6666666555666666677777777766555444666666777777777776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.55  E-value=2.7e-14  Score=144.22  Aligned_cols=122  Identities=19%  Similarity=0.182  Sum_probs=57.7

Q ss_pred             EEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CC-CCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            4 SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LS-LATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         4 ~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~-~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      .+++++++++.+|..+.  +.++.|+|++|.+....+. +. .+++|++|+|++|......+..+..+++|++|+|++|.
T Consensus        22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            45555556665554433  2455666666554433333 33 55556666665543332223345555555555555544


Q ss_pred             CCcccCCc-c-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCC
Q 043408           82 SLTSLSTS-I-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCS  128 (492)
Q Consensus        82 ~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~  128 (492)
                       ++.++.. + .+++|++|+|++|......+..+.++++|++|+|++|.
T Consensus       100 -l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~  147 (361)
T 2xot_A          100 -LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ  147 (361)
T ss_dssp             -CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             -CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence             3333332 1 44555555555433322223344444444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=3.2e-17  Score=175.31  Aligned_cols=190  Identities=20%  Similarity=0.227  Sum_probs=113.7

Q ss_pred             cCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcc-------------cCccccccccCCcCCcEEe-ccCCCCCc
Q 043408           20 QRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCT-------------SLLETHSSIQYLNKLIVLN-LEHCRSLT   84 (492)
Q Consensus        20 ~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~-------------~l~~~~~si~~L~~L~~L~-L~~~~~l~   84 (492)
                      ..+++|+.|+|++|.+. .+|. ++++++|++|++++|.             .....|..++.+++|+.|+ ++.+. +.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cc
Confidence            34555666666655432 3332 5555566666554432             2334455566666666666 33321 11


Q ss_pred             ccCCc---------cCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCC
Q 043408           85 SLSTS---------IHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ  155 (492)
Q Consensus        85 ~lp~~---------~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~  155 (492)
                      .++..         +....|+.|++++| .+..+|. ++.+++|+.|+|++|... .+|..++.+++|+.|+|++|... 
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-  499 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-  499 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-
T ss_pred             hhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-
Confidence            11110         01234777777775 4455665 777777777777776554 66777777777777777775433 


Q ss_pred             CcccccCCccccccccccccccccc--ccccccCCCCcccccCCCc--CCccc----cCCCCCCcEEec
Q 043408          156 RLPNELGNLEALKELKAEGIAIREV--PSSIVCLKNLGRLSFESFK--ELPEC----LGQLSSLRILFL  216 (492)
Q Consensus       156 ~lp~~l~~l~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~l~~~~--~lp~~----l~~l~~L~~L~L  216 (492)
                      .+| .++.+++|+.|++++|.++.+  |..+..+++|+.|++++|.  .+|..    +..+++|+.|++
T Consensus       500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          500 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            466 677777777777777777766  6777777777777777765  23332    234778887764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.54  E-value=3.7e-17  Score=174.82  Aligned_cols=192  Identities=17%  Similarity=0.188  Sum_probs=114.3

Q ss_pred             CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcE
Q 043408           42 LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLIL  121 (492)
Q Consensus        42 l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~  121 (492)
                      +...++|+.|+|++| .+..+|.+++.+++|+.|++++|..+..++...          ..+......|..++++++|+.
T Consensus       345 ~~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll----------~~~~~~~~~~~~l~~l~~L~~  413 (567)
T 1dce_A          345 SATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLM----------RALDPLLYEKETLQYFSTLKA  413 (567)
T ss_dssp             CSTTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred             cccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHH----------HhcccccCCHHHHHHHHhccc
Confidence            466788899999884 456889999999999999987654222222100          001112233444555555555


Q ss_pred             EE-cccCCCCCcccc------ccCC--CCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcc
Q 043408          122 LN-LRNCSRLEGLPS------KICK--LKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGR  192 (492)
Q Consensus       122 L~-L~~~~~l~~lp~------~i~~--l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~  192 (492)
                      |+ ++.+.. ..++.      .+..  ...|+.|+|++| .+..+|. ++.+++|+.|++++|.++.+|..++.+++|+.
T Consensus       414 L~~l~~n~~-~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  490 (567)
T 1dce_A          414 VDPMRAAYL-DDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEV  490 (567)
T ss_dssp             HCGGGHHHH-HHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCE
T ss_pred             Ccchhhccc-chhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCE
Confidence            55 222210 00000      0000  123666666665 3334555 66666666666666666666666666666666


Q ss_pred             cccCCCc--CCccccCCCCCCcEEecCCCccccc--chhhhcCccccccccccccccccCC
Q 043408          193 LSFESFK--ELPECLGQLSSLRILFLDKNNFERI--PESIICLSHLYWLRISYCERLKSLP  249 (492)
Q Consensus       193 L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~c~~l~~lp  249 (492)
                      |++++|.  .+| .++.+++|+.|+|++|.++.+  |..+..+++|+.|+|++|+ +..+|
T Consensus       491 L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~  549 (567)
T 1dce_A          491 LQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE  549 (567)
T ss_dssp             EECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred             EECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence            6666654  355 667777777777777777766  6777777777777777765 34443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.54  E-value=3e-16  Score=168.45  Aligned_cols=237  Identities=19%  Similarity=0.195  Sum_probs=148.7

Q ss_pred             CceEEEccCCC-cccc------c---------ccccCCCCCcEEEccCCCCCCCCC-CCC-CCCCccEEEeeCcccCcc-
Q 043408            1 NLVSLEMPHSS-IKQL------W---------KGVQRLVNLKHLNLSHSEHLTKIP-DLS-LATNLESLTFRGCTSLLE-   61 (492)
Q Consensus         1 nL~~L~L~~s~-i~~l------~---------~~~~~l~~L~~L~Ls~~~~l~~~p-~l~-~~~nL~~L~L~~c~~l~~-   61 (492)
                      +|++|+++++. +..+      |         .....+++|+.|+|++|.+....+ .+. .+++|++|+|++|..+.. 
T Consensus        67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~  146 (594)
T 2p1m_B           67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD  146 (594)
T ss_dssp             TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH
T ss_pred             CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH
Confidence            46788888764 2211      1         112468899999999987543322 243 589999999999976554 


Q ss_pred             -ccccccCCcCCcEEeccCCCCCcc-----cCCcc-CCCCCCEEEeeCCC-CCc--ccCccccCCCCCcEEEcccCCCCC
Q 043408           62 -THSSIQYLNKLIVLNLEHCRSLTS-----LSTSI-HLESLKTLILSGCS-NLM--KLPSSIERLSSLILLNLRNCSRLE  131 (492)
Q Consensus        62 -~~~si~~L~~L~~L~L~~~~~l~~-----lp~~~-~l~~L~~L~L~~c~-~l~--~lp~~i~~l~~L~~L~L~~~~~l~  131 (492)
                       ++.....+++|++|++++|. +..     ++... .+++|++|++++|. .+.  .+...+.++++|++|++++|...+
T Consensus       147 ~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~  225 (594)
T 2p1m_B          147 GLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE  225 (594)
T ss_dssp             HHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred             HHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence             45555689999999999987 322     33323 68899999999976 121  223334668999999999987666


Q ss_pred             ccccccCCCCCCCEEeccCCCC------CCCcccccCCccccccc-ccccccccccccccccCCCCcccccCCCcC----
Q 043408          132 GLPSKICKLKSLERLNLSGCSN------LQRLPNELGNLEALKEL-KAEGIAIREVPSSIVCLKNLGRLSFESFKE----  200 (492)
Q Consensus       132 ~lp~~i~~l~~L~~L~Ls~c~~------l~~lp~~l~~l~~L~~L-~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~----  200 (492)
                      .+|..+..+++|+.|++++|..      ...++..++++++|+.| .+.+.....++..+..+++|+.|++++|.-    
T Consensus       226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~  305 (594)
T 2p1m_B          226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD  305 (594)
T ss_dssp             HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH
T ss_pred             HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH
Confidence            6888888889999998776542      11233344555555555 344433344554445556666666666551    


Q ss_pred             CccccCCCCCCcEEecCCCccc--ccchhhhcCcccccccc
Q 043408          201 LPECLGQLSSLRILFLDKNNFE--RIPESIICLSHLYWLRI  239 (492)
Q Consensus       201 lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L  239 (492)
                      +...+..+++|+.|++++| +.  .++.....+++|+.|++
T Consensus       306 l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          306 LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred             HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence            1112345566666666655 32  23333334556666655

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.53  E-value=5.9e-14  Score=141.66  Aligned_cols=135  Identities=19%  Similarity=0.174  Sum_probs=65.6

Q ss_pred             CCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccc
Q 043408           92 LESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELK  171 (492)
Q Consensus        92 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~  171 (492)
                      +++|++|++++|......+..+.++++|++|+|++|......+..+..+++|++|+|++|......|..+..+++|+.|+
T Consensus        63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  142 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY  142 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence            44444444444322211123345555555555555444333333445555555555555443333344555555556666


Q ss_pred             cccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccc-hhhhcCcc--cccccccccc
Q 043408          172 AEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIP-ESIICLSH--LYWLRISYCE  243 (492)
Q Consensus       172 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~--L~~L~L~~c~  243 (492)
                      +++|.+..+|..+.                 ..+..+++|+.|+|++|+++.+| ..+..++.  |+.|+|++|+
T Consensus       143 L~~N~l~~l~~~~~-----------------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          143 LSQNQISRFPVELI-----------------KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CCSSCCCSCCGGGT-----------------C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCCCcCCeeCHHHh-----------------cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence            65555555543210                 01134566666666666666665 34555554  3566666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.52  E-value=1.7e-13  Score=129.23  Aligned_cols=148  Identities=21%  Similarity=0.174  Sum_probs=75.6

Q ss_pred             cEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCC
Q 043408           73 IVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCS  152 (492)
Q Consensus        73 ~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~  152 (492)
                      +.++.+++ .+..+|..+ .++|++|++++|......|..+.++++|++|+|++|......+..+..+++|++|+|++|.
T Consensus        22 ~~v~c~~~-~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           22 TTVDCRSK-RHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TEEECTTS-CCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEccCC-CcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            34444442 244555432 2555666666544333334555666666666666655433333344566666666666654


Q ss_pred             CCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCc-cccCCCCCCcEEecCCCccc
Q 043408          153 NLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELP-ECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       153 ~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp-~~l~~l~~L~~L~L~~n~l~  222 (492)
                      .....+..++.+++|+.|++++|.+..+|..+..+++|+.|+++++.  .++ ..+..+++|+.|+|++|.+.
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            33333334566666666666666666665544444444444443332  122 23445555666666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.49  E-value=1.3e-13  Score=132.85  Aligned_cols=145  Identities=26%  Similarity=0.313  Sum_probs=121.3

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|++++|+|+.++ ++..+++|+.|+|++|.+.. ++.+..+++|++|+|++|. +..++... . .+|+.|++++|
T Consensus        42 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~l~~l~~L~~L~L~~N~-l~~l~~~~-~-~~L~~L~L~~N  116 (263)
T 1xeu_A           42 GVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD-LSPLKDLTKLEELSVNRNR-LKNLNGIP-S-ACLSRLFLDNN  116 (263)
T ss_dssp             TCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSC-CSCCTTCC-C-SSCCEEECCSS
T ss_pred             cCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC-ChhhccCCCCCEEECCCCc-cCCcCccc-c-CcccEEEccCC
Confidence            5889999999999987 78899999999999998654 4449999999999999975 44555433 3 99999999998


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCC
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ  155 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~  155 (492)
                      . +..++....+++|++|++++|. +..++ .+..+++|++|++++|...+.  ..+..+++|+.|++++|....
T Consensus       117 ~-l~~~~~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          117 E-LRDTDSLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             C-CSBSGGGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             c-cCCChhhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            6 7777765599999999999965 55565 789999999999999987665  678899999999999975543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.49  E-value=4.9e-13  Score=125.33  Aligned_cols=148  Identities=20%  Similarity=0.172  Sum_probs=93.4

Q ss_pred             EEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            4 SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         4 ~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      .+++++++++.+|..+.  ..+++|+|++|.+....+.  +..+++|++|+|++|......+..+..+++|++|+|++|.
T Consensus        15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            56677777777765543  3456777777765544332  5667777777777755433333466677777777777765


Q ss_pred             CCcccCCc-c-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408           82 SLTSLSTS-I-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL  154 (492)
Q Consensus        82 ~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l  154 (492)
                       +..++.. + .+++|++|++++|......|..+..+++|++|+|++|...+..|..+..+++|+.|++++|...
T Consensus        93 -l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           93 -LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             -CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             -cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence             4444432 2 6777777777775544444566677777777777777666666666777777777777776543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=4.8e-13  Score=125.38  Aligned_cols=147  Identities=21%  Similarity=0.233  Sum_probs=89.1

Q ss_pred             cEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCccc-CCcc-CCCCCCEEEeeC
Q 043408           26 KHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSL-STSI-HLESLKTLILSG  102 (492)
Q Consensus        26 ~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~l-p~~~-~l~~L~~L~L~~  102 (492)
                      +.++++++.+ +.+|. +.  ++|++|+|++|......+..+..+++|+.|+|++|. +..+ |..+ ++++|++|++++
T Consensus        14 ~~v~c~~~~l-~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGL-TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCC-SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCc-CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCC
Confidence            5677777653 34443 32  677888887765443333466777777777777765 3333 4333 667777777776


Q ss_pred             CCCCcccCcc-ccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccc
Q 043408          103 CSNLMKLPSS-IERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAI  177 (492)
Q Consensus       103 c~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i  177 (492)
                      |. +..+|.. +.++++|++|+|++|...+..|..+..+++|+.|+|++|...+..+..+..+++|+.|++++|.+
T Consensus        90 N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           90 NK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             Cc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            43 3444443 46666777777776666555566666666666666666544443344466666666666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.45  E-value=2.7e-14  Score=157.10  Aligned_cols=116  Identities=22%  Similarity=0.210  Sum_probs=56.4

Q ss_pred             CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCc
Q 043408           42 LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLI  120 (492)
Q Consensus        42 l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~  120 (492)
                      +..+++|+.|+|++|. +..+|..+..+++|++|+|++|. +..+|..+ ++++|++|+|++|. +..+|..++++++|+
T Consensus       220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLK  296 (727)
T ss_dssp             --CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCS
T ss_pred             hccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCC
Confidence            4455555555555543 22445455555555555555543 33444433 45555555555533 334555555555555


Q ss_pred             EEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccccc
Q 043408          121 LLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL  161 (492)
Q Consensus       121 ~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l  161 (492)
                      +|+|++|.+ +.+|..++.+++|+.|+|++|...+.+|..+
T Consensus       297 ~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          297 YFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             EEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             EEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            555555432 3445445555555555555544444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.44  E-value=1.4e-13  Score=123.02  Aligned_cols=136  Identities=23%  Similarity=0.271  Sum_probs=83.8

Q ss_pred             CCCCCEEEeeCCCCC-cccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccc
Q 043408           92 LESLKTLILSGCSNL-MKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKEL  170 (492)
Q Consensus        92 l~~L~~L~L~~c~~l-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L  170 (492)
                      .++|++|++++|... ..+|..+..+++|++|++++|.....  ..+..+++|++|++++|...+.+|..++.+++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            345555555554422 24555556666666666666553332  455666666666666665544455555556666666


Q ss_pred             ccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccch----hhhcCccccccccccccccc
Q 043408          171 KAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPE----SIICLSHLYWLRISYCERLK  246 (492)
Q Consensus       171 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~c~~l~  246 (492)
                      ++++|.++.+|.                   +..+..+++|+.|++++|.++.+|.    .+..+++|+.|++++|. +.
T Consensus       101 ~Ls~N~l~~~~~-------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~  160 (168)
T 2ell_A          101 NLSGNKLKDIST-------------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQ  160 (168)
T ss_dssp             ECBSSSCCSSGG-------------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SC
T ss_pred             eccCCccCcchh-------------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hh
Confidence            666666665442                   1245667778888888888777765    67778888888888864 44


Q ss_pred             cCC
Q 043408          247 SLP  249 (492)
Q Consensus       247 ~lp  249 (492)
                      ++|
T Consensus       161 ~~~  163 (168)
T 2ell_A          161 EAP  163 (168)
T ss_dssp             BCC
T ss_pred             hcc
Confidence            444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.43  E-value=6.1e-13  Score=118.86  Aligned_cols=135  Identities=25%  Similarity=0.232  Sum_probs=75.9

Q ss_pred             CCccEEEeeCcccC-ccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEc
Q 043408           46 TNLESLTFRGCTSL-LETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNL  124 (492)
Q Consensus        46 ~nL~~L~L~~c~~l-~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L  124 (492)
                      ++|++|++++|... ..+|..+..+++|++|++++|. +..++....+++|++|++++|.....+|..+..+++|++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            44444444444322 2444444555555555555544 333322225666666666665443335555666677777777


Q ss_pred             ccCCCCCc-cccccCCCCCCCEEeccCCCCCCCccc----ccCCccccccccccccccccccc
Q 043408          125 RNCSRLEG-LPSKICKLKSLERLNLSGCSNLQRLPN----ELGNLEALKELKAEGIAIREVPS  182 (492)
Q Consensus       125 ~~~~~l~~-lp~~i~~l~~L~~L~Ls~c~~l~~lp~----~l~~l~~L~~L~l~~~~i~~lp~  182 (492)
                      ++|...+. .+..+..+++|+.|++++|... .+|.    .+..+++|+.|++++|.+.++|.
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            77654332 1256667777777777776443 3333    56777777777777777766664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.43  E-value=1.6e-13  Score=120.04  Aligned_cols=128  Identities=22%  Similarity=0.215  Sum_probs=79.3

Q ss_pred             CCCCEEEeeCCCCC-cccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccc
Q 043408           93 ESLKTLILSGCSNL-MKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELK  171 (492)
Q Consensus        93 ~~L~~L~L~~c~~l-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~  171 (492)
                      ++|++|++++|... +.+|..+..+++|++|++++|...+.  ..++.+++|++|++++|...+.+|..++.+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44555555554432 24555555666666666666544333  4455666666666666554444555555566666666


Q ss_pred             cccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccch----hhhcCcccccccccc
Q 043408          172 AEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPE----SIICLSHLYWLRISY  241 (492)
Q Consensus       172 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~  241 (492)
                      +++|.++.++.                   +..++.+++|+.|++++|.++.+|.    .+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~-------------------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLST-------------------IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHH-------------------HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHH-------------------HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            66666554431                   1345677888888888888887765    677888888888763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.38  E-value=5.5e-13  Score=116.67  Aligned_cols=125  Identities=26%  Similarity=0.238  Sum_probs=78.8

Q ss_pred             CCCCcEEEccCCCCC-CCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEE
Q 043408           22 LVNLKHLNLSHSEHL-TKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTL   98 (492)
Q Consensus        22 l~~L~~L~Ls~~~~l-~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L   98 (492)
                      .++|+.|++++|.+. ..+|. +..+++|++|++++|. +..+ ..++.+++|++|++++|.....+|..+ .+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            466777777777655 34443 5667777777777653 3333 556667777777777765333355444 47777777


Q ss_pred             EeeCCCCCcccC--ccccCCCCCcEEEcccCCCCCccc---cccCCCCCCCEEecc
Q 043408           99 ILSGCSNLMKLP--SSIERLSSLILLNLRNCSRLEGLP---SKICKLKSLERLNLS  149 (492)
Q Consensus        99 ~L~~c~~l~~lp--~~i~~l~~L~~L~L~~~~~l~~lp---~~i~~l~~L~~L~Ls  149 (492)
                      ++++|. +..++  ..+..+++|++|++++|...+..+   ..+..+++|+.|+++
T Consensus        94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777754 33333  667777888888888775544333   356777888888775

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.38  E-value=2.5e-13  Score=149.39  Aligned_cols=149  Identities=23%  Similarity=0.220  Sum_probs=84.7

Q ss_pred             cCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCC
Q 043408          109 LPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLK  188 (492)
Q Consensus       109 lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~  188 (492)
                      .+..+..+++|+.|+|++|... .+|..+..+++|++|+|++|... .+|..++.+++|+.|+|++|.++.+|..++.++
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~  293 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF  293 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence            3445566666666666665543 55555556666666666665333 566666666666666666666666666666666


Q ss_pred             CCcccccCCCc--CCccccCCCCCCcEEecCCCccc-ccchhhhcCc-cccccccccccccccCCCCCcccceeeccc
Q 043408          189 NLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFE-RIPESIICLS-HLYWLRISYCERLKSLPELPCDLSDIEAHC  262 (492)
Q Consensus       189 ~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~c~~l~~lp~l~~sL~~L~~~~  262 (492)
                      +|+.|++++|.  .+|..++.+++|+.|+|++|.++ .+|..+..+. .+..|++++|.....+|   ..++.|++..
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p---~~l~~l~l~~  368 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP---HERRFIEINT  368 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CC--------
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc---cccceeEeec
Confidence            66666666654  46667788888888888888887 4555554432 22346677765544444   3455555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.37  E-value=3.8e-12  Score=116.55  Aligned_cols=92  Identities=20%  Similarity=0.103  Sum_probs=54.2

Q ss_pred             ccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCC
Q 043408           66 IQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLE  144 (492)
Q Consensus        66 i~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~  144 (492)
                      ++.+++|++|+|++|......|..+ ++++|++|++++|......+..+.++++|++|+|++|...+..|..+..+++|+
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence            4455555555555544222223323 555555555555443333334466777777777777777666677777778888


Q ss_pred             EEeccCCCCCCCc
Q 043408          145 RLNLSGCSNLQRL  157 (492)
Q Consensus       145 ~L~Ls~c~~l~~l  157 (492)
                      +|++++|......
T Consensus       130 ~L~L~~N~l~c~c  142 (192)
T 1w8a_A          130 SLNLASNPFNCNC  142 (192)
T ss_dssp             EEECTTCCBCCSG
T ss_pred             EEEeCCCCccCcC
Confidence            8888877655443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.30  E-value=4.7e-12  Score=114.12  Aligned_cols=131  Identities=17%  Similarity=0.132  Sum_probs=77.3

Q ss_pred             cCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc-cCCccccc
Q 043408           90 IHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE-LGNLEALK  168 (492)
Q Consensus        90 ~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~  168 (492)
                      .++.+|++|++++|. +..++......++|++|++++|...+ + ..+..+++|++|++++|.. ..+|.. ++.+++|+
T Consensus        16 ~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcc-cccCcchhhcCCCCC
Confidence            356666667766653 33443322222366666666654433 2 3455555555555555432 233322 24555555


Q ss_pred             ccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchh----hhcCcccccccccccc
Q 043408          169 ELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPES----IICLSHLYWLRISYCE  243 (492)
Q Consensus       169 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~----l~~l~~L~~L~L~~c~  243 (492)
                      .|++++|.+..+|.                   ...+..+++|+.|++++|.++.+|..    +..+++|+.|++++|.
T Consensus        92 ~L~L~~N~i~~~~~-------------------~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           92 ELILTNNSLVELGD-------------------LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EEECCSCCCCCGGG-------------------GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EEECCCCcCCcchh-------------------hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            55555555544432                   01456788888899999988888774    7888888888888865

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=2.1e-11  Score=111.68  Aligned_cols=127  Identities=23%  Similarity=0.261  Sum_probs=98.2

Q ss_pred             cEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCC
Q 043408           73 IVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCS  152 (492)
Q Consensus        73 ~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~  152 (492)
                      ++++++++. ++.+|..+ .++|++|++++| .+..+|..+.++++|++|+|++|...+..+..+..+++|++|+|++|.
T Consensus        13 ~~l~~~~~~-l~~ip~~~-~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKG-LKVLPKGI-PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSC-CSSCCSCC-CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCC-CCcCCCCC-CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            467776654 66777644 367888888885 456788888889999999999888777667778889999999999876


Q ss_pred             CCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccc
Q 043408          153 NLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       153 ~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~  222 (492)
                      .....+..++.+++|+.|++++|.+..+|.                    ..+..+++|+.|+|++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~--------------------~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE--------------------GAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCT--------------------TTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeCh--------------------hhhhcCccccEEEeCCCCee
Confidence            555555678888889999999888887764                    23566788888999998875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.28  E-value=7.2e-12  Score=112.88  Aligned_cols=129  Identities=19%  Similarity=0.267  Sum_probs=94.0

Q ss_pred             ccCCCCCcEEEccCCCCCCCCCCCCCCC-CccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc--CCCCC
Q 043408           19 VQRLVNLKHLNLSHSEHLTKIPDLSLAT-NLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESL   95 (492)
Q Consensus        19 ~~~l~~L~~L~Ls~~~~l~~~p~l~~~~-nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L   95 (492)
                      +..+.+|+.|++++|.+. .+|.+..+. +|++|+|++|. +..+ ..++.+++|++|++++|. +..+|...  .+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence            455778888888888654 456665554 88888888864 3344 567788888888888876 56666433  78888


Q ss_pred             CEEEeeCCCCCcccCc--cccCCCCCcEEEcccCCCCCccccc----cCCCCCCCEEeccCCCC
Q 043408           96 KTLILSGCSNLMKLPS--SIERLSSLILLNLRNCSRLEGLPSK----ICKLKSLERLNLSGCSN  153 (492)
Q Consensus        96 ~~L~L~~c~~l~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~----i~~l~~L~~L~Ls~c~~  153 (492)
                      ++|++++|. +..+|.  .+..+++|++|++++|... .+|..    +..+++|+.|++++|..
T Consensus        91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           91 TELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            888888854 466666  6888888888888887654 45553    77888899998887643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.25  E-value=6.8e-11  Score=108.12  Aligned_cols=123  Identities=20%  Similarity=0.207  Sum_probs=54.7

Q ss_pred             EEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            4 SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         4 ~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      .+++++++++.+|..+..  +|++|+|++|.+....+.  +..+++|++|+|++|......|..+..+++|++|+|++|.
T Consensus        12 ~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           12 TVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            344555555544443322  455555555443333222  4444555555555443333334444445555555555443


Q ss_pred             CCcccCCc-c-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCC
Q 043408           82 SLTSLSTS-I-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSR  129 (492)
Q Consensus        82 ~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~  129 (492)
                       +..++.. + .+++|++|++++|......|..+..+++|++|+|++|..
T Consensus        90 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           90 -IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             -CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             -CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence             2222221 2 444555555555433333344444455555555554443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=1.1e-11  Score=123.20  Aligned_cols=231  Identities=14%  Similarity=0.115  Sum_probs=114.8

Q ss_pred             CceEEEccCCCcc--------------------ccc-ccccC--------CCCCcEEEccCCCCCCCCCC--CCCCCCcc
Q 043408            1 NLVSLEMPHSSIK--------------------QLW-KGVQR--------LVNLKHLNLSHSEHLTKIPD--LSLATNLE   49 (492)
Q Consensus         1 nL~~L~L~~s~i~--------------------~l~-~~~~~--------l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~   49 (492)
                      +|++|+|++|+|.                    .++ ..+..        +++|+.|+|.+ . ++.+++  |.++++|+
T Consensus        50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~  127 (329)
T 3sb4_A           50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLK  127 (329)
T ss_dssp             TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCC
T ss_pred             cCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccc
Confidence            5899999999998                    222 22334        56666666665 2 223332  56666666


Q ss_pred             EEEeeCcccCccccccccCCcCCcEEeccCCC---CCcccCCcc--CCCCCC-EEEeeCCCCCcccCccc----cCCCCC
Q 043408           50 SLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR---SLTSLSTSI--HLESLK-TLILSGCSNLMKLPSSI----ERLSSL  119 (492)
Q Consensus        50 ~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~---~l~~lp~~~--~l~~L~-~L~L~~c~~l~~lp~~i----~~l~~L  119 (492)
                      .|++.++.....-+..+..+.++..+.+....   ....+....  ++..|+ .+.+....   .++..+    ....++
T Consensus       128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~  204 (329)
T 3sb4_A          128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDI  204 (329)
T ss_dssp             EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGC
T ss_pred             eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCcccc
Confidence            66666543332223334444444444433311   011111111  233333 23332211   111111    123344


Q ss_pred             cEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccc-ccCCccccccccccccccccccc-ccccCCCCc-ccccC
Q 043408          120 ILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPN-ELGNLEALKELKAEGIAIREVPS-SIVCLKNLG-RLSFE  196 (492)
Q Consensus       120 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~-~L~l~  196 (492)
                      ..+.+.+.-...........+++|+.|++++|. +..+|+ .|..+.+|+.+++.++ ++.++. .+.++.+|+ .+.+.
T Consensus       205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~  282 (329)
T 3sb4_A          205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP  282 (329)
T ss_dssp             SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC
T ss_pred             ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc
Confidence            455544421111111001125566666666543 334443 4666666777766665 555544 245555665 66555


Q ss_pred             CCc-CCc-cccCCCCCCcEEecCCCcccccch-hhhcCccccccc
Q 043408          197 SFK-ELP-ECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLR  238 (492)
Q Consensus       197 ~~~-~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~  238 (492)
                      +.- .++ ..|.++++|+.|++++|+++.++. .+.++++|+.|+
T Consensus       283 ~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          283 ASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             ccceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            421 232 467788888888888888887765 666677777664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.24  E-value=7.5e-11  Score=106.12  Aligned_cols=126  Identities=17%  Similarity=0.150  Sum_probs=64.2

Q ss_pred             EEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCC
Q 043408            4 SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         4 ~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~   81 (492)
                      .+++++++++.+|..+.  ++|+.|++++|.+....+. +..+++|++|+|++|.. ..++. .++.             
T Consensus        11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~-------------   74 (177)
T 2o6r_A           11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDK-------------   74 (177)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTT-------------
T ss_pred             EEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc-eEeChhHccC-------------
Confidence            45555555555553332  4556666665554332222 44555555555555432 22222 2344             


Q ss_pred             CCcccCCccCCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCC
Q 043408           82 SLTSLSTSIHLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQR  156 (492)
Q Consensus        82 ~l~~lp~~~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~  156 (492)
                                +++|++|++++|. +..+| ..+..+++|++|++++|...+..+..+..+++|++|++++|.....
T Consensus        75 ----------l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           75 ----------LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             ----------CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ----------CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence                      4455555555533 22233 2355666666666666654433333346677777777777655443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.24  E-value=7.6e-11  Score=106.10  Aligned_cols=128  Identities=25%  Similarity=0.274  Sum_probs=68.0

Q ss_pred             cEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCC
Q 043408           73 IVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGC  151 (492)
Q Consensus        73 ~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c  151 (492)
                      +.++++++. ++.+|..+ .++|++|++++|. +..++. .+..+++|++|++++|...+..+..+..+++|++|++++|
T Consensus        10 ~~l~~~~~~-l~~~p~~~-~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKG-LTSVPTGI-PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSC-CSSCCTTC-CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCC-CccCCCCC-CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            455555433 44554322 3556666666643 233332 3456666666666666544333344556666666666665


Q ss_pred             CCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccc
Q 043408          152 SNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFER  223 (492)
Q Consensus       152 ~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~  223 (492)
                      ...+..+..++.+++|+.|++++|.++.+|.                    ..+..+++|+.|++++|.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------------------~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPD--------------------GIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--------------------TTTTTCTTCCEEECCSSCBCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCH--------------------HHhcCCcccCEEEecCCCeec
Confidence            4333333335555666666666665554443                    123455666677777776653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.22  E-value=6.1e-11  Score=108.66  Aligned_cols=125  Identities=20%  Similarity=0.257  Sum_probs=81.3

Q ss_pred             cEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCc-c-CCCCCCEEEeeCC
Q 043408           26 KHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTS-I-HLESLKTLILSGC  103 (492)
Q Consensus        26 ~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~L~~c  103 (492)
                      ++++++++.+ +.+|. .-.++|++|+|++| .+..+|..+..+++|+.|+|++|. ++.++.. + ++++|++|++++|
T Consensus        13 ~~l~~~~~~l-~~ip~-~~~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGL-KVLPK-GIPRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCC-SSCCS-CCCTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCC-CcCCC-CCCCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCC
Confidence            4566666553 33443 11256777777764 344666667777777777777765 4444432 3 6777778887775


Q ss_pred             CCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408          104 SNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL  154 (492)
Q Consensus       104 ~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l  154 (492)
                      ......+..+..+++|++|+|++|......+..+..+++|+.|++++|...
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            543333446788888888888887766544456778888888888887543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.12  E-value=5.7e-13  Score=122.59  Aligned_cols=114  Identities=21%  Similarity=0.223  Sum_probs=74.3

Q ss_pred             CcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccc
Q 043408          106 LMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIV  185 (492)
Q Consensus       106 l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~  185 (492)
                      ++.+|..+..+++|++|++++|.... +| .+..+++|++|++++|. +..+|..+..+++|+.|++++|.+..+| .+.
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~  112 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIE  112 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccc
Confidence            44555677777777777777765443 55 66677777777777753 3466766666777788888877777766 455


Q ss_pred             cCCCCcccccCCCc--CCc--cccCCCCCCcEEecCCCcccc
Q 043408          186 CLKNLGRLSFESFK--ELP--ECLGQLSSLRILFLDKNNFER  223 (492)
Q Consensus       186 ~l~~L~~L~l~~~~--~lp--~~l~~l~~L~~L~L~~n~l~~  223 (492)
                      .+++|+.|++++|.  .++  ..+..+++|+.|++++|.++.
T Consensus       113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            56666666665543  122  245666777777777776653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.12  E-value=5.7e-13  Score=122.59  Aligned_cols=125  Identities=22%  Similarity=0.252  Sum_probs=78.1

Q ss_pred             CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCc
Q 043408           42 LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLI  120 (492)
Q Consensus        42 l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~  120 (492)
                      +..+++|++|+|++|. +..+| .+..+++|+.|++++|. +..+|... .+++|++|++++|. +..+| .+..+++|+
T Consensus        44 ~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~  118 (198)
T 1ds9_A           44 LSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSS
T ss_pred             HhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCC
Confidence            5556677777776653 33355 66667777777777664 45566544 45677777777753 34444 566777777


Q ss_pred             EEEcccCCCCCccc-cccCCCCCCCEEeccCCCCCCCccc----------ccCCcccccccc
Q 043408          121 LLNLRNCSRLEGLP-SKICKLKSLERLNLSGCSNLQRLPN----------ELGNLEALKELK  171 (492)
Q Consensus       121 ~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~----------~l~~l~~L~~L~  171 (492)
                      +|++++|.....-+ ..+..+++|++|++++|...+..|.          .+..+++|+.|+
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            77777765543211 3567777788888877655443333          256677777776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.03  E-value=7.9e-10  Score=99.41  Aligned_cols=109  Identities=20%  Similarity=0.297  Sum_probs=61.2

Q ss_pred             EEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccc-ccCCcccccccccccc
Q 043408           97 TLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPN-ELGNLEALKELKAEGI  175 (492)
Q Consensus        97 ~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~l~~~  175 (492)
                      .++++++ .+..+|..+.  ++|++|+|++|...+..|..+.++++|++|+|++|. +..+|. .++.+++|+.|++++|
T Consensus        16 ~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           16 LVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             EEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence            4444442 2344444432  455666666655555445556666666666666643 333433 3456666666666666


Q ss_pred             cccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhh
Q 043408          176 AIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESII  229 (492)
Q Consensus       176 ~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~  229 (492)
                      .+..+|.                    ..+..+++|+.|+|++|.+...+..+.
T Consensus        92 ~l~~l~~--------------------~~~~~l~~L~~L~L~~N~~~c~~~~~~  125 (174)
T 2r9u_A           92 HLKSIPR--------------------GAFDNLKSLTHIYLYNNPWDCECRDIM  125 (174)
T ss_dssp             CCCCCCT--------------------TTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred             ccceeCH--------------------HHhccccCCCEEEeCCCCcccccccHH
Confidence            6665543                    224567777788888887775554333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.01  E-value=1e-09  Score=98.27  Aligned_cols=106  Identities=22%  Similarity=0.302  Sum_probs=58.5

Q ss_pred             CEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccc
Q 043408           96 KTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGI  175 (492)
Q Consensus        96 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~  175 (492)
                      +++++++ +.+..+|..+.  ++|++|+|++|...+..|..+..+++|++|+|++|...+..+..++.+++|+.|++++|
T Consensus        12 ~~l~~s~-n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSG-KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCC-CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            3444444 23334444332  45556666665555555555666666666666665433222333466666666666666


Q ss_pred             cccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccccc
Q 043408          176 AIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERI  224 (492)
Q Consensus       176 ~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~l  224 (492)
                      .++.+|.                    ..+..+++|+.|+|++|.++..
T Consensus        89 ~l~~~~~--------------------~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           89 QLKSIPR--------------------GAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCCT--------------------TTTTTCTTCCEEECCSSCBCTT
T ss_pred             ccCEeCH--------------------HHhcCCCCCCEEEeCCCCCCCC
Confidence            6665543                    2345667777777777776533

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.98  E-value=1.3e-08  Score=103.97  Aligned_cols=226  Identities=14%  Similarity=0.208  Sum_probs=161.1

Q ss_pred             ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCcccc-ccccCCcCCcEEec
Q 043408            2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETH-SSIQYLNKLIVLNL   77 (492)
Q Consensus         2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~-~si~~L~~L~~L~L   77 (492)
                      ++.+.++. +++.+. ..+..+ +|+.+.+..+  ++.+++  |.+ .+|+.+.+..  .+..+. ..+..+.+|+.+++
T Consensus       115 l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          115 YNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             CSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEEC
T ss_pred             ccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeec
Confidence            44556664 467776 345554 7999999875  444443  666 4799999975  455554 45778899999999


Q ss_pred             cCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCc-cccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCC
Q 043408           78 EHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPS-SIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQ  155 (492)
Q Consensus        78 ~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~  155 (492)
                      .++. ++.++... ...+|+.+.+..  .+..++. .|.++++|+.+++..+  +..++.....-.+|+.+.+..  .+.
T Consensus       188 ~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~--~i~  260 (401)
T 4fdw_A          188 SKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPN--GVT  260 (401)
T ss_dssp             TTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEET--TCC
T ss_pred             CCCc-ceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCC--Ccc
Confidence            8764 67776654 678999999975  3666654 5888999999999863  444544433337899999964  344


Q ss_pred             Cc-ccccCCccccccccccccccc-----ccc-cccccCCCCcccccCCCc-CCc-cccCCCCCCcEEecCCCcccccc-
Q 043408          156 RL-PNELGNLEALKELKAEGIAIR-----EVP-SSIVCLKNLGRLSFESFK-ELP-ECLGQLSSLRILFLDKNNFERIP-  225 (492)
Q Consensus       156 ~l-p~~l~~l~~L~~L~l~~~~i~-----~lp-~~~~~l~~L~~L~l~~~~-~lp-~~l~~l~~L~~L~L~~n~l~~lp-  225 (492)
                      .+ ...+..+++|+.+++.++.+.     .++ ..+..+++|+.+.+...- .++ ..+.++++|+.+.|..+ ++.+. 
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~  339 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINF  339 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence            55 356888999999999887665     344 356788899999987532 343 46788999999999554 77665 


Q ss_pred             hhhhcCcccccccccccc
Q 043408          226 ESIICLSHLYWLRISYCE  243 (492)
Q Consensus       226 ~~l~~l~~L~~L~L~~c~  243 (492)
                      ..+.++ +|+.+++.++.
T Consensus       340 ~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             TSSSSS-CCCEEEECCSS
T ss_pred             HhCCCC-CCCEEEEcCCC
Confidence            467778 99999999863

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.96  E-value=2.7e-08  Score=101.50  Aligned_cols=224  Identities=13%  Similarity=0.153  Sum_probs=153.3

Q ss_pred             CCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCcccccc-ccCCcCCcEEeccCCCCCcccCCcc--CCCCC
Q 043408           21 RLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETHSS-IQYLNKLIVLNLEHCRSLTSLSTSI--HLESL   95 (492)
Q Consensus        21 ~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~s-i~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L   95 (492)
                      .+..++.+.+.++  .+.++.  |.++ +|+.+.+..+  +..+... +.+ .+|+.+.+..  .++.++...  ++.+|
T Consensus       111 ~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L  182 (401)
T 4fdw_A          111 ILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNL  182 (401)
T ss_dssp             ECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTC
T ss_pred             ecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccC
Confidence            3577888888764  334443  6664 7999998753  6566543 334 5799999875  466666544  88999


Q ss_pred             CEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCcc-ccccCCCCCCCEEeccCCCCCCCccc-ccCCcccccccccc
Q 043408           96 KTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGL-PSKICKLKSLERLNLSGCSNLQRLPN-ELGNLEALKELKAE  173 (492)
Q Consensus        96 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~l~  173 (492)
                      +.+++.++ .+..++...-...+|+.+.|..+  +..+ ...+.++++|+.+++..+  +..++. .+.. .+|+.+.+ 
T Consensus       183 ~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l-  255 (401)
T 4fdw_A          183 KKADLSKT-KITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL-  255 (401)
T ss_dssp             CEEECTTS-CCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE-
T ss_pred             CeeecCCC-cceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe-
Confidence            99999874 56677766444689999999853  4444 345778889999999863  444443 3555 68888888 


Q ss_pred             ccccccccc-ccccCCCCcccccCCCcC-------Cc-cccCCCCCCcEEecCCCcccccch-hhhcCcccccccccccc
Q 043408          174 GIAIREVPS-SIVCLKNLGRLSFESFKE-------LP-ECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCE  243 (492)
Q Consensus       174 ~~~i~~lp~-~~~~l~~L~~L~l~~~~~-------lp-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~  243 (492)
                      .+.++.++. .+..+++|+.+.+.++..       ++ ..+..+++|+.++|. ++++.++. .+.++++|+.+.|..+ 
T Consensus       256 p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-  333 (401)
T 4fdw_A          256 PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-  333 (401)
T ss_dssp             ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-
T ss_pred             CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-
Confidence            445666644 567888999998876542       33 467889999999998 45777764 6777899999988553 


Q ss_pred             ccccCCCC---Ccccceeeccc
Q 043408          244 RLKSLPEL---PCDLSDIEAHC  262 (492)
Q Consensus       244 ~l~~lp~l---~~sL~~L~~~~  262 (492)
                       ++.|+.-   -.+|+.+.+.+
T Consensus       334 -l~~I~~~aF~~~~L~~l~l~~  354 (401)
T 4fdw_A          334 -VTQINFSAFNNTGIKEVKVEG  354 (401)
T ss_dssp             -CCEECTTSSSSSCCCEEEECC
T ss_pred             -ccEEcHHhCCCCCCCEEEEcC
Confidence             5555431   11555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.95  E-value=3.6e-09  Score=95.06  Aligned_cols=107  Identities=19%  Similarity=0.168  Sum_probs=66.5

Q ss_pred             cEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCC
Q 043408           73 IVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCS  152 (492)
Q Consensus        73 ~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~  152 (492)
                      +.++++++. +..+|..+ .++|++|++++|......|..+.++++|++|+|++|...+..+..+.++++|++|+|++|.
T Consensus        15 ~~l~~~~n~-l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIR-LASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSC-CSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCC-CCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            455665543 55565544 2666777777654333335567777777777777765544333345677777777777754


Q ss_pred             CCCCccc-ccCCccccccccccccccccccc
Q 043408          153 NLQRLPN-ELGNLEALKELKAEGIAIREVPS  182 (492)
Q Consensus       153 ~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~  182 (492)
                      .. .+|. .++.+++|+.|++++|.+.-.+.
T Consensus        93 l~-~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           93 LK-SIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CC-CCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             cc-eeCHHHhccccCCCEEEeCCCCcccccc
Confidence            43 4444 47777778888887777665443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.93  E-value=4.3e-09  Score=94.15  Aligned_cols=105  Identities=20%  Similarity=0.129  Sum_probs=69.0

Q ss_pred             CcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCC
Q 043408           72 LIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGC  151 (492)
Q Consensus        72 L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c  151 (492)
                      .+.++++++. ++.+|..+ .++|++|++++|......|..+.++++|++|+|++|...+..+..+..+++|++|+|++|
T Consensus        11 ~~~l~~s~n~-l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKS-LASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSC-CSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCC-cCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4566666644 56666544 366777777775443334556777788888888877665544445677888888888876


Q ss_pred             CCCCCcccccCCccccccccccccccc
Q 043408          152 SNLQRLPNELGNLEALKELKAEGIAIR  178 (492)
Q Consensus       152 ~~l~~lp~~l~~l~~L~~L~l~~~~i~  178 (492)
                      ...+..+..++.+++|+.|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            544333345777888888888887665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.83  E-value=5.3e-09  Score=103.72  Aligned_cols=54  Identities=15%  Similarity=0.175  Sum_probs=40.5

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeC
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRG   55 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~   55 (492)
                      +|++|+|++ +++.+. ..+..|++|+.|++++|......+. |..+.++..+.+..
T Consensus       102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A          102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence            578899998 899998 4588899999999999876543333 77777777666543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.80  E-value=2.9e-10  Score=115.05  Aligned_cols=158  Identities=17%  Similarity=0.104  Sum_probs=76.4

Q ss_pred             CcCCcEEeccCCCCCcc-----cCCcc--CCCCCCEEEeeCCCCCcccCcc-ccCCCCCcEEEcccCCCCCcccccc---
Q 043408           69 LNKLIVLNLEHCRSLTS-----LSTSI--HLESLKTLILSGCSNLMKLPSS-IERLSSLILLNLRNCSRLEGLPSKI---  137 (492)
Q Consensus        69 L~~L~~L~L~~~~~l~~-----lp~~~--~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~i---  137 (492)
                      +++|+.|+|++|. +..     +...+  ..++|++|++++|.....-... ...+++|++|+|++|.....-...+   
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            3567777777765 221     11111  2356777777765432221111 2234466666666665443222222   


Q ss_pred             --CCCCCCCEEeccCCCCCC----CcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCC
Q 043408          138 --CKLKSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSL  211 (492)
Q Consensus       138 --~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L  211 (492)
                        ...++|++|+|++|....    .++..+..+++|++|++++|.+.....                ..+...+...++|
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~----------------~~L~~~L~~~~~L  213 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL----------------ELLAAQLDRNRQL  213 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH----------------HHHHHHGGGCSCC
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH----------------HHHHHHHhcCCCc
Confidence              234556666666654321    133334455556666666665542110                0122334445556


Q ss_pred             cEEecCCCccc-----ccchhhhcCcccccccccccc
Q 043408          212 RILFLDKNNFE-----RIPESIICLSHLYWLRISYCE  243 (492)
Q Consensus       212 ~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~  243 (492)
                      +.|+|++|.++     .+...+...++|+.|+|++|.
T Consensus       214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            66666666654     233444455666666666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.69  E-value=2.5e-08  Score=99.35  Aligned_cols=84  Identities=15%  Similarity=0.040  Sum_probs=46.5

Q ss_pred             EEeeCCCCCcccCccccCCCCCcEEEccc-CCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccc
Q 043408           98 LILSGCSNLMKLPSSIERLSSLILLNLRN-CSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIA  176 (492)
Q Consensus        98 L~L~~c~~l~~lp~~i~~l~~L~~L~L~~-~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~  176 (492)
                      +++++++.+..+|. +..+++|++|+|++ |.+.+..+..+.++++|+.|+|++|...+..|..++.+++|+.|+|++|.
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            34444324555555 55566666666654 44333333456666666666666654444444455666666666666666


Q ss_pred             cccccc
Q 043408          177 IREVPS  182 (492)
Q Consensus       177 i~~lp~  182 (492)
                      +..+|.
T Consensus        92 l~~~~~   97 (347)
T 2ifg_A           92 LESLSW   97 (347)
T ss_dssp             CSCCCS
T ss_pred             cceeCH
Confidence            665553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.66  E-value=6.2e-08  Score=96.52  Aligned_cols=86  Identities=24%  Similarity=0.216  Sum_probs=39.8

Q ss_pred             CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccc-ccCCccccc
Q 043408           91 HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPN-ELGNLEALK  168 (492)
Q Consensus        91 ~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~  168 (492)
                      .+++|++|+|++++.+..++ ..|+++++|++|+|++|.+.+..|..+.++++|+.|+|++|... .+|. .+..+. |+
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~-L~  106 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQ  106 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-CC
T ss_pred             CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-ce
Confidence            34444444444322333333 33555555555555555444444444555555555555554322 3332 233332 55


Q ss_pred             cccccccccc
Q 043408          169 ELKAEGIAIR  178 (492)
Q Consensus       169 ~L~l~~~~i~  178 (492)
                      .|++.+|.+.
T Consensus       107 ~l~l~~N~~~  116 (347)
T 2ifg_A          107 ELVLSGNPLH  116 (347)
T ss_dssp             EEECCSSCCC
T ss_pred             EEEeeCCCcc
Confidence            5555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.60  E-value=1.9e-09  Score=109.09  Aligned_cols=109  Identities=19%  Similarity=0.086  Sum_probs=53.9

Q ss_pred             cCCcEEeccCCCCCcc-cCCcc-CCCCCCEEEeeCCCCCcccCc----cc-cCCCCCcEEEcccCCCCC----ccccccC
Q 043408           70 NKLIVLNLEHCRSLTS-LSTSI-HLESLKTLILSGCSNLMKLPS----SI-ERLSSLILLNLRNCSRLE----GLPSKIC  138 (492)
Q Consensus        70 ~~L~~L~L~~~~~l~~-lp~~~-~l~~L~~L~L~~c~~l~~lp~----~i-~~l~~L~~L~L~~~~~l~----~lp~~i~  138 (492)
                      .+|+.|+|++|..-.. +.... .+++|++|++++|.....-..    .+ ...++|++|+|++|....    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            4566666666542111 11101 344566666666543222111    12 234566666666665432    2334445


Q ss_pred             CCCCCCEEeccCCCCCC----CcccccCCccccccccccccccc
Q 043408          139 KLKSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIR  178 (492)
Q Consensus       139 ~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~  178 (492)
                      ..++|++|+|++|....    .+...+...++|+.|++++|.+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            56667777777664321    12344455556666666666655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.52  E-value=3.8e-08  Score=98.90  Aligned_cols=159  Identities=13%  Similarity=0.133  Sum_probs=73.4

Q ss_pred             cccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCcccc--CCCCCcEEEcccCCC-------CCcccc
Q 043408           65 SIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIE--RLSSLILLNLRNCSR-------LEGLPS  135 (492)
Q Consensus        65 si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~--~l~~L~~L~L~~~~~-------l~~lp~  135 (492)
                      .+..+++|+.|+|++|..+ .++. +.+++|++|++..|.........+.  .+++|++|+|+.+..       ...+..
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            3445666777777665322 2333 3466677777666543222222222  566666666642110       001111


Q ss_pred             cc--CCCCCCCEEeccCCCCCCCcccc---cCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCC
Q 043408          136 KI--CKLKSLERLNLSGCSNLQRLPNE---LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSS  210 (492)
Q Consensus       136 ~i--~~l~~L~~L~Ls~c~~l~~lp~~---l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~  210 (492)
                      .+  ..+++|+.|+|.+|......+..   .+.+++|++|+++.|.+...-.                ..++..+.++++
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~----------------~~L~~~L~~l~~  308 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA----------------RLLLDHVDKIKH  308 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH----------------HHHHTTHHHHTT
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH----------------HHHHhhcccCCc
Confidence            11  13455666666554332211111   1234455555555444432100                012233456788


Q ss_pred             CcEEecCCCcccc-cchhhhc-Ccccccccccccc
Q 043408          211 LRILFLDKNNFER-IPESIIC-LSHLYWLRISYCE  243 (492)
Q Consensus       211 L~~L~L~~n~l~~-lp~~l~~-l~~L~~L~L~~c~  243 (492)
                      |+.|+|++|.++. .-..+.. +  ...++++++.
T Consensus       309 L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          309 LKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             ceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            8999998888762 2222322 2  2446666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.51  E-value=6.9e-08  Score=97.00  Aligned_cols=162  Identities=14%  Similarity=0.161  Sum_probs=105.1

Q ss_pred             cccccccCCCCCcEEEccCCCCCC---------CCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCC
Q 043408           14 QLWKGVQRLVNLKHLNLSHSEHLT---------KIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSL   83 (492)
Q Consensus        14 ~l~~~~~~l~~L~~L~Ls~~~~l~---------~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l   83 (492)
                      .+...+..+++|+.|.+.+.....         .+.. +..+|+|+.|+|++|..+ .++. +. +++|+.|++..|..-
T Consensus       130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~  206 (362)
T 2ra8_A          130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLP  206 (362)
T ss_dssp             HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCC
T ss_pred             HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCC
Confidence            345566778999999997643210         1212 456799999999997433 3333 33 789999999876522


Q ss_pred             cccCCc---cCCCCCCEEEeeCCCC-------CcccCccc--cCCCCCcEEEcccCCCCCcccccc---CCCCCCCEEec
Q 043408           84 TSLSTS---IHLESLKTLILSGCSN-------LMKLPSSI--ERLSSLILLNLRNCSRLEGLPSKI---CKLKSLERLNL  148 (492)
Q Consensus        84 ~~lp~~---~~l~~L~~L~L~~c~~-------l~~lp~~i--~~l~~L~~L~L~~~~~l~~lp~~i---~~l~~L~~L~L  148 (492)
                      ......   ..+++|+.|+|+.+..       +..+...+  ..+++|++|+|.+|......+..+   ..+++|++|+|
T Consensus       207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL  286 (362)
T 2ra8_A          207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI  286 (362)
T ss_dssp             HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred             hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC
Confidence            111111   1689999999864211       22222233  358999999999987654332222   35789999999


Q ss_pred             cCCCCCC----CcccccCCccccccccccccccc
Q 043408          149 SGCSNLQ----RLPNELGNLEALKELKAEGIAIR  178 (492)
Q Consensus       149 s~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~  178 (492)
                      +.|....    .++..+..+++|+.|++++|.+.
T Consensus       287 s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            8865432    24445567789999999999876

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.47  E-value=2.5e-06  Score=86.51  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=19.3

Q ss_pred             CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEccc
Q 043408           91 HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRN  126 (492)
Q Consensus        91 ~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~  126 (492)
                      ++++|+.+.+...  +..++ ..+.++.+|+.+.+..
T Consensus       160 ~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          160 TCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             TCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred             ccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence            5667777776542  23333 2356666666666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.10  E-value=0.00033  Score=70.23  Aligned_cols=248  Identities=15%  Similarity=0.167  Sum_probs=119.9

Q ss_pred             ceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      |+.+.++ .+++.+. ..+..+.+|+.++|..+  .+.+++  |.++ +|+.+.+-.  .+..+........+|+.+.+.
T Consensus        48 i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L~~i~lp  121 (379)
T 4h09_A           48 ISEVRVN-SGITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDLDDFEFP  121 (379)
T ss_dssp             CSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCCSEEECC
T ss_pred             CEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc--eeeEeccceeccCCcccccCC
Confidence            3444444 2355555 34666777777777653  333433  5554 566665542  344444433333467777665


Q ss_pred             CCCCCcccCCcc-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCC-------------------------
Q 043408           79 HCRSLTSLSTSI-HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLE-------------------------  131 (492)
Q Consensus        79 ~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~-------------------------  131 (492)
                      .+  +..+.... .-.+|+.+.+..  .+..+. ..+.++.+++.+.+.......                         
T Consensus       122 ~~--~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (379)
T 4h09_A          122 GA--TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT  197 (379)
T ss_dssp             TT--CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred             Cc--cccccccccccceeeeeeccc--eeeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence            42  22222211 222344443332  111121 223444444444433221110                         


Q ss_pred             ----------ccccccCCCCCCCEEeccCCCCCCCcc-cccCCccccccccccccccccccc-ccccCCCCcccccCCCc
Q 043408          132 ----------GLPSKICKLKSLERLNLSGCSNLQRLP-NELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESFK  199 (492)
Q Consensus       132 ----------~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~  199 (492)
                                .....+....+|+.+.+...  +..+. ..+..+..|+.+.+..+ ++.+.. .+..+.+|+.+.+...-
T Consensus       198 ~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i  274 (379)
T 4h09_A          198 EFTIPSTVKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKV  274 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCC
T ss_pred             ccccccceeEEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccc
Confidence                      01112233445555555431  22221 23455566666666543 333332 34456667766664432


Q ss_pred             -CCc-cccCCCCCCcEEecCCCcccccch-hhhcCccccccccccccccccCCCCCcccceeecccccccccccc
Q 043408          200 -ELP-ECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSG  271 (492)
Q Consensus       200 -~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~~~~C~~L~~l~~  271 (492)
                       .++ ..+..+++|+.+.+.++.++.++. .+.++.+|+.+.|...  ++.|..       --..+|.+|+.+.-
T Consensus       275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~-------~aF~~C~~L~~i~i  340 (379)
T 4h09_A          275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQV-------YAFKNCKALSTISY  340 (379)
T ss_dssp             SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECT-------TTTTTCTTCCCCCC
T ss_pred             eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHH-------HHhhCCCCCCEEEE
Confidence             233 256778888888888887877764 5667777777766321  222221       12356777776644

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.05  E-value=6.9e-05  Score=75.82  Aligned_cols=228  Identities=13%  Similarity=0.117  Sum_probs=145.7

Q ss_pred             ccccCCCCCcEEEccCCCCCCCCC--CCCCCCCccEEEeeCcccCcccc-ccccCCcCCcEEeccCCCCCcccCCcc-CC
Q 043408           17 KGVQRLVNLKHLNLSHSEHLTKIP--DLSLATNLESLTFRGCTSLLETH-SSIQYLNKLIVLNLEHCRSLTSLSTSI-HL   92 (492)
Q Consensus        17 ~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~~~nL~~L~L~~c~~l~~~~-~si~~L~~L~~L~L~~~~~l~~lp~~~-~l   92 (492)
                      ..+..+.+|+.+.+.++.  ..++  .|.++.+|+.+.+..+  +..+. ..+..+..|+.+.+..+.  ..+.... ..
T Consensus       156 ~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~  229 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSK  229 (394)
T ss_dssp             TTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTT
T ss_pred             hhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCc--eEeehhhccc
Confidence            457788999999998653  3333  3888999999988653  44443 345567778877766532  2232222 56


Q ss_pred             CCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcc-cccCCccccccc
Q 043408           93 ESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP-NELGNLEALKEL  170 (492)
Q Consensus        93 ~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L  170 (492)
                      .+|+.+.+..  ....+. ..+.++..|+.+.+..+ ....-...+..+..++.+......    ++ ..+..+.+|+.+
T Consensus       230 ~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i  302 (394)
T 4fs7_A          230 TGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEV  302 (394)
T ss_dssp             CCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEE
T ss_pred             CCCceEEECC--CceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee----ecccccccccccccc
Confidence            7788887764  233333 34677888888888764 222233445667777777665421    22 245667778877


Q ss_pred             cccccccccccc-ccccCCCCcccccCCC-cCCc-cccCCCCCCcEEecCCCcccccch-hhhcCccccccccccccccc
Q 043408          171 KAEGIAIREVPS-SIVCLKNLGRLSFESF-KELP-ECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCERLK  246 (492)
Q Consensus       171 ~l~~~~i~~lp~-~~~~l~~L~~L~l~~~-~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~  246 (492)
                      .+..+ ++.++. .+.++.+|+.+++... ..+. ..+.++++|+.+++..+ ++.+.. .+.++.+|+.+++..+  ++
T Consensus       303 ~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~  378 (394)
T 4fs7_A          303 KLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LE  378 (394)
T ss_dssp             EECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GG
T ss_pred             ccccc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CE
Confidence            77554 555543 3567788888887543 3343 46788999999999766 776654 6778888998887653  22


Q ss_pred             cCCCCCcccceeecccccccccc
Q 043408          247 SLPELPCDLSDIEAHCCSSLEAL  269 (492)
Q Consensus       247 ~lp~l~~sL~~L~~~~C~~L~~l  269 (492)
                      .       +. -...+|++|+.+
T Consensus       379 ~-------~~-~~F~~c~~L~~I  393 (394)
T 4fs7_A          379 Q-------YR-YDFEDTTKFKWI  393 (394)
T ss_dssp             G-------GG-GGBCTTCEEEEE
T ss_pred             E-------hh-heecCCCCCcEE
Confidence            2       22 246688888765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.03  E-value=0.00021  Score=72.17  Aligned_cols=266  Identities=14%  Similarity=0.196  Sum_probs=126.7

Q ss_pred             ccccc-ccccCCC-CCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCc--ccCccccc-cccCCcCCcEEeccCCCCCc
Q 043408           12 IKQLW-KGVQRLV-NLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGC--TSLLETHS-SIQYLNKLIVLNLEHCRSLT   84 (492)
Q Consensus        12 i~~l~-~~~~~l~-~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c--~~l~~~~~-si~~L~~L~~L~L~~~~~l~   84 (492)
                      ++.+. ..+..++ .|+.+.+..+  .+.+.+  |.++.+|+.+.+..+  ..+..+.. .+..+.+|+.+.+..  .++
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~  126 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVT  126 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCS
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccc
Confidence            44454 3455554 4777777654  333433  777788888877653  23444432 344556666655543  244


Q ss_pred             ccCCcc--CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccccc
Q 043408           85 SLSTSI--HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL  161 (492)
Q Consensus        85 ~lp~~~--~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l  161 (492)
                      .++...  .+.+|+.+.+..  .+..++ ..+.++.+|+.+.+..+  +..+.........|+.+.+..... ..-...+
T Consensus       127 ~I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af  201 (394)
T 4gt6_A          127 EIDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVT-RIGTNAF  201 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCC-EECTTTT
T ss_pred             eehhhhhhhhcccccccccc--eeeeecccceecccccccccccce--eeEeccccccccceeEEEECCccc-ccccchh
Confidence            444332  566677766653  223332 23555666666666542  222222222234455555432110 0000112


Q ss_pred             CCcccccccccccc---------------------------cc--ccccc--------ccccCCCCcccccCCCc-CCc-
Q 043408          162 GNLEALKELKAEGI---------------------------AI--REVPS--------SIVCLKNLGRLSFESFK-ELP-  202 (492)
Q Consensus       162 ~~l~~L~~L~l~~~---------------------------~i--~~lp~--------~~~~l~~L~~L~l~~~~-~lp-  202 (492)
                      ..+..|+.......                           ..  -.+|.        .+..+.+|+.+.+.... .+. 
T Consensus       202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~  281 (394)
T 4gt6_A          202 SECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGT  281 (394)
T ss_dssp             TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECT
T ss_pred             hhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecC
Confidence            22222221111000                           00  01222        24456667777665432 232 


Q ss_pred             cccCCCCCCcEEecCCCcccccch-hhhcCccccccccccccccccCCCCCcccceeecccccccccccccchhhccCCC
Q 043408          203 ECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSW  281 (492)
Q Consensus       203 ~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~~~~C~~L~~l~~~~~~~~~~~~  281 (492)
                      ..+.++++|+.+.+. +.++.++. .+.++.+|+.+.|..+  ++.|.+       --..+|.+|+.+.-+...    ..
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~-------~aF~~C~~L~~i~ip~sv----~~  347 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILD-------DAFAGCEQLERIAIPSSV----TK  347 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECT-------TTTTTCTTCCEEEECTTC----CB
T ss_pred             cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehH-------hHhhCCCCCCEEEECccc----CE
Confidence            356778888888885 44666664 5666778887776432  333322       123466666665432210    00


Q ss_pred             CCceeecccc-CCCCCceeCCCC
Q 043408          282 NSQCFDFQHC-EVPRGMICFPGS  303 (492)
Q Consensus       282 ~~~~~~~~~c-~l~~~~~~~pg~  303 (492)
                      . ....|.+| +|.  .+.+||.
T Consensus       348 I-~~~aF~~C~~L~--~i~~~~~  367 (394)
T 4gt6_A          348 I-PESAFSNCTALN--NIEYSGS  367 (394)
T ss_dssp             C-CGGGGTTCTTCC--EEEESSC
T ss_pred             E-hHhHhhCCCCCC--EEEECCc
Confidence            0 12347777 664  3445554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.00  E-value=2.4e-06  Score=76.25  Aligned_cols=95  Identities=15%  Similarity=0.266  Sum_probs=68.7

Q ss_pred             cccccccCCCCCcEEEccCCCCCCC-CCCCCCCCCccEEEeeCcccCccc-cccccCC----cCCcEEeccCCCCCcc--
Q 043408           14 QLWKGVQRLVNLKHLNLSHSEHLTK-IPDLSLATNLESLTFRGCTSLLET-HSSIQYL----NKLIVLNLEHCRSLTS--   85 (492)
Q Consensus        14 ~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~l~~~~nL~~L~L~~c~~l~~~-~~si~~L----~~L~~L~L~~~~~l~~--   85 (492)
                      .+|.....-.+|+.|||++|.+... +..+..+++|++|+|++|..++.- -..+..+    ++|+.|+|++|..++.  
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            4454333334799999999984432 345789999999999999876542 2234444    4799999999987764  


Q ss_pred             cCCccCCCCCCEEEeeCCCCCcc
Q 043408           86 LSTSIHLESLKTLILSGCSNLMK  108 (492)
Q Consensus        86 lp~~~~l~~L~~L~L~~c~~l~~  108 (492)
                      +.....+++|++|++++|..++.
T Consensus       132 l~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCCc
Confidence            22223789999999999988764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.98  E-value=0.00028  Score=71.32  Aligned_cols=96  Identities=19%  Similarity=0.321  Sum_probs=57.7

Q ss_pred             ceEEEccCCCccccc-ccccCCCCCcEEEccCCC--CCCCCCC--CCCCCCccEEEeeCcccCccccc-cccCCcCCcEE
Q 043408            2 LVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSE--HLTKIPD--LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVL   75 (492)
Q Consensus         2 L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~--~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L   75 (492)
                      |+.+.++.+ ++.+. ..+..+.+|+.+.+..+.  .++.+..  |..+.+|+.+.+..  .+..+.. .+..+.+|+.+
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTTTTCTTCCEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhhhhhcccccc
Confidence            677777754 77776 567889999999997652  2333433  67777787776643  2333332 34556777777


Q ss_pred             eccCCCCCcccCCcc--CCCCCCEEEeeC
Q 043408           76 NLEHCRSLTSLSTSI--HLESLKTLILSG  102 (492)
Q Consensus        76 ~L~~~~~l~~lp~~~--~l~~L~~L~L~~  102 (492)
                      .+...  +..++...  .+.+|+.+.+..
T Consensus       143 ~lp~~--~~~I~~~~F~~c~~L~~i~~~~  169 (394)
T 4gt6_A          143 TIPEG--VTSVADGMFSYCYSLHTVTLPD  169 (394)
T ss_dssp             ECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred             cccce--eeeecccceecccccccccccc
Confidence            76532  33333322  556666666543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.94  E-value=6.9e-06  Score=73.27  Aligned_cols=85  Identities=12%  Similarity=0.179  Sum_probs=46.1

Q ss_pred             CCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccC--CccCC----CCCCEEEeeCCCCCccc-CccccCCC
Q 043408           45 ATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLS--TSIHL----ESLKTLILSGCSNLMKL-PSSIERLS  117 (492)
Q Consensus        45 ~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp--~~~~l----~~L~~L~L~~c~~l~~l-p~~i~~l~  117 (492)
                      -.+|++|||++|.....--..+..+++|+.|+|++|..++.-.  ....+    ++|++|++++|..++.- -..+.+++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3568888888887443333455667777777777776554321  10022    35666666666554421 12234445


Q ss_pred             CCcEEEcccCCC
Q 043408          118 SLILLNLRNCSR  129 (492)
Q Consensus       118 ~L~~L~L~~~~~  129 (492)
                      +|++|+|++|..
T Consensus       140 ~L~~L~L~~c~~  151 (176)
T 3e4g_A          140 NLKYLFLSDLPG  151 (176)
T ss_dssp             TCCEEEEESCTT
T ss_pred             CCCEEECCCCCC
Confidence            555555554443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.91  E-value=4.2e-06  Score=75.60  Aligned_cols=117  Identities=17%  Similarity=0.116  Sum_probs=67.2

Q ss_pred             ccccCCCCCcEEEcccC-CCCC----ccccccCCCCCCCEEeccCCCCCC----CcccccCCcccccccccccccccccc
Q 043408          111 SSIERLSSLILLNLRNC-SRLE----GLPSKICKLKSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIREVP  181 (492)
Q Consensus       111 ~~i~~l~~L~~L~L~~~-~~l~----~lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~lp  181 (492)
                      ..+...+.|++|+|++| ....    .+...+...++|++|+|++|....    .+.+.+...++|++|++++|.|..--
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            44566788888888887 4432    244455666778888887765322    12233444456666666666655210


Q ss_pred             cccccCCCCcccccCCCcCCccccCCCCCCcEEec--CCCccc-----ccchhhhcCcccccccccccc
Q 043408          182 SSIVCLKNLGRLSFESFKELPECLGQLSSLRILFL--DKNNFE-----RIPESIICLSHLYWLRISYCE  243 (492)
Q Consensus       182 ~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L--~~n~l~-----~lp~~l~~l~~L~~L~L~~c~  243 (492)
                      .                ..+...+...++|++|+|  ++|.+.     .+...+...++|+.|+|++|.
T Consensus       110 ~----------------~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          110 I----------------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             H----------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             H----------------HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            0                012233445566777777  667665     244555566677777776653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.76  E-value=0.001  Score=66.53  Aligned_cols=225  Identities=12%  Similarity=0.090  Sum_probs=104.4

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCcccc-ccccCCcCCcEEecc
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETH-SSIQYLNKLIVLNLE   78 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~-~si~~L~~L~~L~L~   78 (492)
                      |..+.++ ++++.+........+|+.+++..+-  +.+..  +.+. +|+.+.+-.  .+..+. ..+..+.+|+.+.+.
T Consensus        93 l~~i~~~-~~l~~I~~~aF~~~~L~~i~lp~~~--~~i~~~~F~~~-~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~  166 (379)
T 4h09_A           93 LQSYTGM-ERVKKFGDYVFQGTDLDDFEFPGAT--TEIGNYIFYNS-SVKRIVIPK--SVTTIKDGIGYKAENLEKIEVS  166 (379)
T ss_dssp             CCEEEEC-TTCCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTC-CCCEEEECT--TCCEECSCTTTTCTTCCEEEEC
T ss_pred             CceEECC-ceeeEeccceeccCCcccccCCCcc--ccccccccccc-eeeeeeccc--eeeccccchhcccccccccccc
Confidence            4445554 3366665443334578888887642  22222  3333 455555443  122222 223445555555544


Q ss_pred             CCCCCcccCC-------------ccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCcc-ccccCCCCCCC
Q 043408           79 HCRSLTSLST-------------SIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGL-PSKICKLKSLE  144 (492)
Q Consensus        79 ~~~~l~~lp~-------------~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~  144 (492)
                      ..........             ......+..+.+... ........+..+.+|+.+.+..+  +..+ ...+..+..|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~  243 (379)
T 4h09_A          167 SNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALD  243 (379)
T ss_dssp             TTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCC
T ss_pred             cccceeecccceecccccceeccccccccccccccccc-eeEEeecccccccccceeeeccc--eeEEccccccCCccce
Confidence            3221110000             002233333333221 11111223444555666555432  1211 22344555666


Q ss_pred             EEeccCCCCCCCcc-cccCCccccccccccccccccccc-ccccCCCCcccccCCC--cCCc-cccCCCCCCcEEecCCC
Q 043408          145 RLNLSGCSNLQRLP-NELGNLEALKELKAEGIAIREVPS-SIVCLKNLGRLSFESF--KELP-ECLGQLSSLRILFLDKN  219 (492)
Q Consensus       145 ~L~Ls~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~--~~lp-~~l~~l~~L~~L~L~~n  219 (492)
                      .+.+..+  +..+. ..+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+.++  ..++ ..+.++.+|+.+.|..+
T Consensus       244 ~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          244 EIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             EEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             EEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            6666442  22222 23455555666555432 333332 3455566666666543  2343 35677888888888643


Q ss_pred             cccccch-hhhcCcccccccc
Q 043408          220 NFERIPE-SIICLSHLYWLRI  239 (492)
Q Consensus       220 ~l~~lp~-~l~~l~~L~~L~L  239 (492)
                       ++.|.. .+.++.+|+.+.+
T Consensus       321 -l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          321 -LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             -CCEECTTTTTTCTTCCCCCC
T ss_pred             -ccEEHHHHhhCCCCCCEEEE
Confidence             666653 5566666666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.69  E-value=7.1e-06  Score=74.09  Aligned_cols=116  Identities=13%  Similarity=0.088  Sum_probs=80.2

Q ss_pred             CCCCCCEEEeeCCCCCc-----ccCccccCCCCCcEEEcccCCCCCc----cccccCCCCCCCEEeccCCCCCCC----c
Q 043408           91 HLESLKTLILSGCSNLM-----KLPSSIERLSSLILLNLRNCSRLEG----LPSKICKLKSLERLNLSGCSNLQR----L  157 (492)
Q Consensus        91 ~l~~L~~L~L~~c~~l~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~Ls~c~~l~~----l  157 (492)
                      ..++|++|+|++|..+.     .+...+...++|++|+|++|.....    +...+...++|++|+|++|.....    +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            67899999999983443     2455677889999999999986542    444556678999999999755322    4


Q ss_pred             ccccCCccccccccc--ccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccc
Q 043408          158 PNELGNLEALKELKA--EGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       158 p~~l~~l~~L~~L~l--~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~  222 (492)
                      .+.+...++|++|++  ++|.+..--.                ..+...+...++|++|+|++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~----------------~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVE----------------MEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHH----------------HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHH----------------HHHHHHHHhCCCcCEEeccCCCCC
Confidence            455666677888888  6676652100                012223455678899999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.38  E-value=7.1e-05  Score=71.52  Aligned_cols=94  Identities=17%  Similarity=0.151  Sum_probs=61.2

Q ss_pred             EEccCCCccccccc----ccCCCCCcEEEccCCCCCC--CCCC-CCCCCCccEEEeeCcccCccccccccCCc--CCcEE
Q 043408            5 LEMPHSSIKQLWKG----VQRLVNLKHLNLSHSEHLT--KIPD-LSLATNLESLTFRGCTSLLETHSSIQYLN--KLIVL   75 (492)
Q Consensus         5 L~L~~s~i~~l~~~----~~~l~~L~~L~Ls~~~~l~--~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~--~L~~L   75 (492)
                      ++++.|..+.+...    ...+++|+.|+|++|++..  .+|+ +..+++|+.|+|++|.... + ..+..+.  +|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceE
Confidence            45666655544322    1458899999999988654  2333 4578999999998865433 2 2344444  89999


Q ss_pred             eccCCCCCcccCCc-------c-CCCCCCEEEe
Q 043408           76 NLEHCRSLTSLSTS-------I-HLESLKTLIL  100 (492)
Q Consensus        76 ~L~~~~~l~~lp~~-------~-~l~~L~~L~L  100 (492)
                      +|++|..-..+|..       + .+++|+.||-
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            99998754444421       1 6888888863

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.16  E-value=0.00024  Score=67.75  Aligned_cols=79  Identities=29%  Similarity=0.333  Sum_probs=41.0

Q ss_pred             cCCCCCcEEEcccCCCCC--ccccccCCCCCCCEEeccCCCCCCCcccccCCcc--cccccccccccccc-cc-------
Q 043408          114 ERLSSLILLNLRNCSRLE--GLPSKICKLKSLERLNLSGCSNLQRLPNELGNLE--ALKELKAEGIAIRE-VP-------  181 (492)
Q Consensus       114 ~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~--~L~~L~l~~~~i~~-lp-------  181 (492)
                      .++++|+.|+|++|...+  .+|..+..+++|+.|+|++|...+ + ..++.+.  +|++|++++|.+.. +|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            345566666666655544  344444556666666666543322 2 1222222  56666666666542 22       


Q ss_pred             cccccCCCCcccc
Q 043408          182 SSIVCLKNLGRLS  194 (492)
Q Consensus       182 ~~~~~l~~L~~L~  194 (492)
                      ..+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2345667776665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.29  E-value=0.009  Score=54.00  Aligned_cols=66  Identities=21%  Similarity=0.283  Sum_probs=34.9

Q ss_pred             ccCCCCCcEEEcccCCCCC-----ccccccCCCCCCCEEeccCCCCC----CCcccccCCccccccccccccccc
Q 043408          113 IERLSSLILLNLRNCSRLE-----GLPSKICKLKSLERLNLSGCSNL----QRLPNELGNLEALKELKAEGIAIR  178 (492)
Q Consensus       113 i~~l~~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~Ls~c~~l----~~lp~~l~~l~~L~~L~l~~~~i~  178 (492)
                      +.+-+.|++|+|++++.++     .+...+..-+.|+.|+|++|..-    ..+-+.+..-+.|++|+|++|.|.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3445677777777653332     13344555566777777665432    123333334455666666666554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.73  E-value=0.014  Score=52.76  Aligned_cols=61  Identities=20%  Similarity=0.140  Sum_probs=29.3

Q ss_pred             CCCCCEEEeeCCCCCc-----ccCccccCCCCCcEEEcccCCCCC----ccccccCCCCCCCEEeccCCC
Q 043408           92 LESLKTLILSGCSNLM-----KLPSSIERLSSLILLNLRNCSRLE----GLPSKICKLKSLERLNLSGCS  152 (492)
Q Consensus        92 l~~L~~L~L~~c~~l~-----~lp~~i~~l~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~c~  152 (492)
                      -+.|++|+|++++.+.     .+-..+..-+.|+.|+|++|....    .+...+..-+.|+.|+|+.|.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            3456666665532332     123334445566666666655432    122233334556666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.23  E-value=0.058  Score=45.13  Aligned_cols=51  Identities=14%  Similarity=0.147  Sum_probs=27.4

Q ss_pred             EEEccCCCcc--cccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCc
Q 043408            4 SLEMPHSSIK--QLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGC   56 (492)
Q Consensus         4 ~L~L~~s~i~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c   56 (492)
                      .++.++++++  .+|.++.  .+|+.|+|++|.+....++ |..+++|++|+|.+|
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            3455566665  6664432  3566666666654433332 455556666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.08  E-value=0.041  Score=46.11  Aligned_cols=35  Identities=20%  Similarity=0.182  Sum_probs=25.5

Q ss_pred             CCCcEEecCCCcccccch-hhhcCcccccccccccc
Q 043408          209 SSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCE  243 (492)
Q Consensus       209 ~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~  243 (492)
                      ++|+.|+|++|+|+.+|. .+..+++|+.|+|++|+
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            467788888888887765 45667778888777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	492
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 5e-10
 Identities = 46/276 (16%), Positives = 96/276 (34%), Gaps = 9/276 (3%)

Query: 1   NLVSLEMPHSSIKQLWKGV-QRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTS 58
           +   L++ ++ I ++  G  + L NL  L L +++     P   +    LE L       
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 59  LLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSS 118
                   + L +L V   E  +   S+   ++   +  L  +   +      + + +  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 119 LILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR 178
           L  + + + + +  +P  +    SL  L+L G    +     L  L  L +L     +I 
Sbjct: 152 LSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 179 EVPSSIVCLK---NLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLY 235
            V +  +          L+     ++P  L     +++++L  NN   I  +  C     
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 236 WLRISYCE-RLKSLPELPCDLSDIEAHCCSSLEALS 270
             + SY    L S P    ++      C     A+ 
Sbjct: 269 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 35/181 (19%), Positives = 57/181 (31%), Gaps = 12/181 (6%)

Query: 81  RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKL 140
             L  +   +       L L             + L +L  L L N    +  P     L
Sbjct: 20  LGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 78

Query: 141 KSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSI------VCLKNLGRLS 194
             LERL LS    L+ LP ++      +EL+     I +V  S+      + +  LG   
Sbjct: 79  VKLERLYLSKN-QLKELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135

Query: 195 FESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCD 254
            +S          +  L  + +   N   IP+ +     L  L +   +  K        
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKG 193

Query: 255 L 255
           L
Sbjct: 194 L 194

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 34/228 (14%), Positives = 61/228 (26%), Gaps = 11/228 (4%)

Query: 105 NLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNL 164
            L K+P  +       LL+L+N    E        LK+L  L L      +  P     L
Sbjct: 21  GLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 78

Query: 165 EALKELKAEGIAIREVPSSI-VCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFER 223
             L+ L      ++E+P  +   L+ L     E  K        L+ + ++ L  N  + 
Sbjct: 79  VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

Query: 224 IPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNS 283
                     +  L                +++ I      SL  L       T+    S
Sbjct: 139 SGIENGAFQGMKKLSYIRIAD--------TNITTIPQGLPPSLTELHLDGNKITKVDAAS 190

Query: 284 QCFDFQHCEVPRGMICFPGSELPEWFMFQSMGASAIFKLPLDCFSYNF 331
                   ++          +         +    +    L       
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.7 bits (125), Expect = 5e-08
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 8/173 (4%)

Query: 79  HCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKIC 138
               ++ ++    L +L  L L    N +K   ++  L++L  L+L N  ++  L   + 
Sbjct: 205 TNNQISDITPLGILTNLDELSL--NGNQLKDIGTLASLTNLTDLDLANN-QISNLAP-LS 260

Query: 139 KLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESF 198
            L  L  L L         P          EL    +      S++  L  L  L F + 
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL-TLYFNNI 319

Query: 199 KELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPEL 251
            ++   +  L+ L+ LF   N    +  S+  L+++ WL   +  ++  L  L
Sbjct: 320 SDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN-QISDLTPL 369

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 7e-06
 Identities = 38/210 (18%), Positives = 74/210 (35%), Gaps = 32/210 (15%)

Query: 32  HSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIH 91
            +  ++ I  L + TNL+ L+  G    L+   ++  L  L  L+L + + +++L+    
Sbjct: 205 TNNQISDITPLGILTNLDELSLNGN--QLKDIGTLASLTNLTDLDLANNQ-ISNLAPLSG 261

Query: 92  LESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGC 151
           L  L  L L     +  +       +   L    N        S I  LK+L  L L   
Sbjct: 262 LTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLED---ISPISNLKNLTYLTLYFN 317

Query: 152 SNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSL 211
            N+  +   + +L  L+ L      + +V S                      L  L+++
Sbjct: 318 -NISDIS-PVSSLTKLQRLFFANNKVSDVSS----------------------LANLTNI 353

Query: 212 RILFLDKNNFERIPESIICLSHLYWLRISY 241
             L    N    +   +  L+ +  L ++ 
Sbjct: 354 NWLSAGHNQISDLTP-LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 49/265 (18%), Positives = 89/265 (33%), Gaps = 18/265 (6%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL 60
            + +L+     IK +  GV+ L NL  +N S++  LT I  L   T L  +         
Sbjct: 45  QVTTLQADRLGIKSI-DGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIAD 102

Query: 61  ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLI 120
            T  +       + L       +  L    +            + L    ++I  +S+L 
Sbjct: 103 ITPLANLTNLTGLTLFNNQITDIDPLKNLTN-----------LNRLELSSNTISDISALS 151

Query: 121 LLNLRNCSRLEGLPSKICKLKSLERLNL-SGCSNLQRLPNELGNLEALKELKAEGIAIRE 179
            L            + +  L +L  L      SN     + L  L  L+ L A    I +
Sbjct: 152 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 211

Query: 180 VPSSIVCLKNLGRLSFESFK-ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLR 238
           +    +   NL  LS    + +    L  L++L  L L  N    +   +  L+ L  L+
Sbjct: 212 ITPLGIL-TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELK 269

Query: 239 ISYCERLKSLPELPCDLSDIEAHCC 263
           +    ++ ++  L    +       
Sbjct: 270 LGAN-QISNISPLAGLTALTNLELN 293

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 7e-06
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 9/78 (11%)

Query: 91  HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSG 150
              SL+ L +S    L++LP+   RL  LI     + + L  +P      ++L++L++  
Sbjct: 282 LPPSLEELNVSNN-KLIELPALPPRLERLIA----SFNHLAEVPE---LPQNLKQLHVEY 333

Query: 151 CSNLQRLPNELGNLEALK 168
              L+  P+   ++E L+
Sbjct: 334 N-PLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 137 ICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFE 196
                SLE LN+S    L  LP     LE    L A    + EVP     LK L  + + 
Sbjct: 280 CDLPPSLEELNVSNN-KLIELPALPPRLE---RLIASFNHLAEVPELPQNLKQL-HVEYN 334

Query: 197 SFKELPECLGQLSSLRI 213
             +E P+    +  LR+
Sbjct: 335 PLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 193 LSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELP 252
           +S     ELP        L  L    N+   +PE      +L  L + Y   L+  P++P
Sbjct: 291 VSNNKLIELPALPP---RLERLIASFNHLAEVPEL---PQNLKQLHVEYN-PLREFPDIP 343

Query: 253 CDLSDI 258
             + D+
Sbjct: 344 ESVEDL 349

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 40/290 (13%), Positives = 83/290 (28%), Gaps = 39/290 (13%)

Query: 1   NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTS 58
            +++   P S + Q          ++H++LS+S          LS  + L++L+  G   
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83

Query: 59  LLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSS 118
                +++   + L+ LNL  C   +  +    L S   L     S          +++ 
Sbjct: 84  SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 143

Query: 119 LILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR 178
             +        L G    + K      +                                
Sbjct: 144 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN--------------------------- 176

Query: 179 EVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNF--ERIPESIICLSHLYW 236
                   +      S     +  +   QL+ L+ L L +           +  +  L  
Sbjct: 177 -------LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 229

Query: 237 LRISYCERLKSLPELPCDLSDIEAHCCS-SLEALSGLSILFTQTSWNSQC 285
           L++       +L  L   L  ++ +C   +  A   +     Q  W  +C
Sbjct: 230 LQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGIKC 279

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 21/174 (12%), Positives = 41/174 (23%), Gaps = 9/174 (5%)

Query: 189 NLGRLSFESFKELPECLGQLSSLRILFLDKNNF-----ERIPESIICLSHLYWLRISYCE 243
            L  ++ E  K +   L +  S++ + L  N         + E+I     L     S   
Sbjct: 11  KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF 70

Query: 244 RLKSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQCFDFQHCEVPRGMICFPGS 303
             +   E+P  L  +             L  +    +           +           
Sbjct: 71  TGRVKDEIPEALRLLLQALLK----CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 304 ELPEWFMFQSMGASAIFKLPLDCFSYNFVGFALCAVVAFRDHHDGGGSFHVCCE 357
            L    +    GA     L     +           +    +    GS     +
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 100 LSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLP 158
           L        LP  + +L  L  LN+     L G   +   L+  +    +    L   P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 25/155 (16%), Positives = 45/155 (29%), Gaps = 3/155 (1%)

Query: 3   VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLET 62
           V L      I+++   +  L   KHL LS   ++ KI  LS   NL  L+          
Sbjct: 28  VELHGMIPPIEKMDATLSTLKACKHLALST-NNIEKISSLSGMENLRILSLGRNLIKKIE 86

Query: 63  HSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILL 122
           +           L + + +  +       +      + +           +  L  L  L
Sbjct: 87  NLDAVADTL-EELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145

Query: 123 NLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRL 157
            L     L     +           +    NL++L
Sbjct: 146 LLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL 179

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 8/117 (6%)

Query: 122 LNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVP 181
           L+L +   L  L   + +L  +  L+LS    L+ LP  L  L  L+ L+A   A+  V 
Sbjct: 3   LHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD 59

Query: 182 SSIVCLK----NLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHL 234
                 +     L     +      + L     L +L L  N+  +       L+ +
Sbjct: 60  GVANLPRLQELLLCNNRLQQS-AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	492
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.82
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.6
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.36
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.36
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.3
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.27
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.26
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.16
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.15
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.15
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.03
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.86
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.71
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.7
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.58
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.34
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.72
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.64

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=1.4e-24  Score=212.99  Aligned_cols=241  Identities=18%  Similarity=0.179  Sum_probs=146.8

Q ss_pred             CCcEEEccCCCCCCC--CC-CCCCCCCccEEEeeCcccC-ccccccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEE
Q 043408           24 NLKHLNLSHSEHLTK--IP-DLSLATNLESLTFRGCTSL-LETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTL   98 (492)
Q Consensus        24 ~L~~L~Ls~~~~l~~--~p-~l~~~~nL~~L~L~~c~~l-~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L   98 (492)
                      +++.|+|+++.....  +| .++++++|++|+|++|..+ +.+|.++++|++|++|+|++|......+..+ .+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            566677776655432  33 3666777777777664333 3666677777777777777665333333323 56667777


Q ss_pred             EeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCC-CEEeccCCCCCCCcccccCCcccccccccccccc
Q 043408           99 ILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSL-ERLNLSGCSNLQRLPNELGNLEALKELKAEGIAI  177 (492)
Q Consensus        99 ~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L-~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i  177 (492)
                      ++++|.....+|..+.++++|+++++++|...+.+|..+..+..+ +.+++++|...+..|..++.+..+ .+++..+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            777666666666677777777777777766666666666666554 666666655555555555554433 455555544


Q ss_pred             c-ccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCccc-ccchhhhcCccccccccccccccccCCCC--
Q 043408          178 R-EVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFE-RIPESIICLSHLYWLRISYCERLKSLPEL--  251 (492)
Q Consensus       178 ~-~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--  251 (492)
                      . .+|..+..+++|+.+++.++.  ..+..++.+++|+.|+|++|+++ .+|..+.++++|++|+|++|+.-+.+|+.  
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~  289 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN  289 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCccc
Confidence            4 455556666666666666654  23345666677777777777776 67777777777777777776554566654  


Q ss_pred             Ccccceeecccccc
Q 043408          252 PCDLSDIEAHCCSS  265 (492)
Q Consensus       252 ~~sL~~L~~~~C~~  265 (492)
                      ..+|+.+++.+...
T Consensus       290 L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         290 LQRFDVSAYANNKC  303 (313)
T ss_dssp             GGGSCGGGTCSSSE
T ss_pred             CCCCCHHHhCCCcc
Confidence            23444444444433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=8.3e-23  Score=200.11  Aligned_cols=247  Identities=18%  Similarity=0.169  Sum_probs=218.8

Q ss_pred             CceEEEccCCCcc---cccccccCCCCCcEEEccC-CCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEE
Q 043408            1 NLVSLEMPHSSIK---QLWKGVQRLVNLKHLNLSH-SEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVL   75 (492)
Q Consensus         1 nL~~L~L~~s~i~---~l~~~~~~l~~L~~L~Ls~-~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L   75 (492)
                      ++++|+|+++++.   .+|..++++++|++|+|++ |.+.+.+|. ++++++|++|+|++|......+..+..+.+|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            3789999999887   5889999999999999997 666667775 9999999999999988777777888999999999


Q ss_pred             eccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCC-cEEEcccCCCCCccccccCCCCCCCEEeccCCCC
Q 043408           76 NLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSL-ILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSN  153 (492)
Q Consensus        76 ~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L-~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~  153 (492)
                      ++++|.....+|..+ ++++|+.+++++|.....+|..+..+.++ +.+++++|...+..|..+..+..+ .++++.+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            999998777888767 89999999999988777899999888886 889999998888888888877654 799999888


Q ss_pred             CCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc---CCccccCCCCCCcEEecCCCccc-ccchhhh
Q 043408          154 LQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK---ELPECLGQLSSLRILFLDKNNFE-RIPESII  229 (492)
Q Consensus       154 l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~---~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~  229 (492)
                      .+.+|..++.+++|+.+++.++.+...+..+..+++|+.|++++|+   .+|..++.+++|++|+|++|+++ .+|. ++
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~  288 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GG  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-ST
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cc
Confidence            8889999999999999999999998777788999999999999987   69999999999999999999998 7884 68


Q ss_pred             cCccccccccccccccccCC
Q 043408          230 CLSHLYWLRISYCERLKSLP  249 (492)
Q Consensus       230 ~l~~L~~L~L~~c~~l~~lp  249 (492)
                      ++++|+.+++++|+.+...|
T Consensus       289 ~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTT
T ss_pred             cCCCCCHHHhCCCccccCCC
Confidence            89999999999998776654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=6.9e-20  Score=183.16  Aligned_cols=256  Identities=22%  Similarity=0.290  Sum_probs=185.1

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|++++++|+.+ +++..+++|++|+|++|++ +.++.++++++|++|++++|.. ..++ .++.+++|+.|+++++
T Consensus        45 ~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l-~~l~~l~~L~~L~~L~L~~n~i-~~i~-~l~~l~~L~~L~~~~~  120 (384)
T d2omza2          45 QVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQL-TDITPLKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGLTLFNN  120 (384)
T ss_dssp             TCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCC-CCCG-GGTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcC-CCCccccCCccccccccccccc-cccc-cccccccccccccccc
Confidence            588999999999998 6889999999999999974 5667799999999999999764 4444 3788999999998775


Q ss_pred             CCCcc---------------------c-------------------------------------------CCccCCCCCC
Q 043408           81 RSLTS---------------------L-------------------------------------------STSIHLESLK   96 (492)
Q Consensus        81 ~~l~~---------------------l-------------------------------------------p~~~~l~~L~   96 (492)
                      .....                     +                                           .....+++++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (384)
T d2omza2         121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE  200 (384)
T ss_dssp             CCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccc
Confidence            42100                     0                                           0011467788


Q ss_pred             EEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccc
Q 043408           97 TLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIA  176 (492)
Q Consensus        97 ~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~  176 (492)
                      .++++++. +..+++ ...+++|+.|++++|.... + ..+..+++|+.|++++|.. ..++ .++.+++|+.|+++++.
T Consensus       201 ~l~l~~n~-i~~~~~-~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l-~~~~-~~~~~~~L~~L~l~~~~  274 (384)
T d2omza2         201 SLIATNNQ-ISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQI-SNLA-PLSGLTKLTELKLGANQ  274 (384)
T ss_dssp             EEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCC-CCCG-GGTTCTTCSEEECCSSC
T ss_pred             eeeccCCc-cCCCCc-ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCcc-CCCC-cccccccCCEeeccCcc
Confidence            88888864 333332 5667889999999886543 3 3577888999999998754 3444 37778889999999888


Q ss_pred             ccccccccccCCCCcccccCCCc-CCccccCCCCCCcEEecCCCcccccchhhhcCccccccccccccccccCCCC--Cc
Q 043408          177 IREVPSSIVCLKNLGRLSFESFK-ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPEL--PC  253 (492)
Q Consensus       177 i~~lp~~~~~l~~L~~L~l~~~~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~~  253 (492)
                      +..++. +..++.++.+.+..+. .-...+..+++++.|++++|+++.++ .+..+++|+.|++++| .++.++.+  .+
T Consensus       275 l~~~~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~~l~~l~  351 (384)
T d2omza2         275 ISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANN-KVSDVSSLANLT  351 (384)
T ss_dssp             CCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSS-CCCCCGGGGGCT
T ss_pred             cCCCCc-cccccccccccccccccccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCC-CCCCChhHcCCC
Confidence            887764 5667777777777654 22334677778888888888887765 3777888888888887 45555543  35


Q ss_pred             ccceeeccccccccccc
Q 043408          254 DLSDIEAHCCSSLEALS  270 (492)
Q Consensus       254 sL~~L~~~~C~~L~~l~  270 (492)
                      +|++|++.++ .++.++
T Consensus       352 ~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         352 NINWLSAGHN-QISDLT  367 (384)
T ss_dssp             TCCEEECCSS-CCCBCG
T ss_pred             CCCEEECCCC-cCCCCh
Confidence            7777777665 455443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=2.8e-19  Score=173.86  Aligned_cols=254  Identities=17%  Similarity=0.181  Sum_probs=192.5

Q ss_pred             eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      +.++=++.+++++|.++.  +++++|+|++|++....+ .|.++++|++|++++|......|..+..+++|++|++++|.
T Consensus        13 ~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence            456777788999998764  689999999997654444 48899999999999988776667789999999999999986


Q ss_pred             CCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCC--ccccccCCCCCCCEEeccCCCCCCCccc
Q 043408           82 SLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLE--GLPSKICKLKSLERLNLSGCSNLQRLPN  159 (492)
Q Consensus        82 ~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp~  159 (492)
                       ++.+|.. ....++.|++.++......+..+.....++.++...+....  ..+..+..+++|+.+++++|. ...+|.
T Consensus        91 -l~~l~~~-~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~  167 (305)
T d1xkua_          91 -LKELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ  167 (305)
T ss_dssp             -CSBCCSS-CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS
T ss_pred             -cCcCccc-hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCc
Confidence             7777764 45678999998865443333346677788888887765433  334557778889999998864 444554


Q ss_pred             ccCCcccccccccccccccc-cccccccCCCCcccccCCCc--C-CccccCCCCCCcEEecCCCcccccchhhhcCcccc
Q 043408          160 ELGNLEALKELKAEGIAIRE-VPSSIVCLKNLGRLSFESFK--E-LPECLGQLSSLRILFLDKNNFERIPESIICLSHLY  235 (492)
Q Consensus       160 ~l~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~--~-lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~  235 (492)
                      .+  .++|+.|++++|.+.. .+..+..++.++.|+++++.  . .+..+..+++|++|+|++|.++.+|..+..+++|+
T Consensus       168 ~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~  245 (305)
T d1xkua_         168 GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ  245 (305)
T ss_dssp             SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCC
T ss_pred             cc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCC
Confidence            43  5788899999887774 45567888889999888875  2 35567888999999999999999998999999999


Q ss_pred             ccccccccccccCCC----------CCcccceeeccccc
Q 043408          236 WLRISYCERLKSLPE----------LPCDLSDIEAHCCS  264 (492)
Q Consensus       236 ~L~L~~c~~l~~lp~----------l~~sL~~L~~~~C~  264 (492)
                      +|+|++| .++.|+.          ...+|+.|++.+.+
T Consensus       246 ~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         246 VVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             EEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             EEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            9999997 4777753          13456666666543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=2.5e-19  Score=174.21  Aligned_cols=236  Identities=18%  Similarity=0.201  Sum_probs=193.3

Q ss_pred             CceEEEccCCCcccccc-cccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEecc
Q 043408            1 NLVSLEMPHSSIKQLWK-GVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLE   78 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~   78 (492)
                      +|++|+|++|+|++++. .+..+++|++|++++|.+....|+ |.++++|++|++++| .+..+|...  ...|+.|++.
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~~~--~~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM--PKTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC--CTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC-ccCcCccch--hhhhhhhhcc
Confidence            57899999999999995 689999999999999998776665 899999999999997 466777543  4688999998


Q ss_pred             CCCCCcccCCcc--CCCCCCEEEeeCCCCCc--ccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408           79 HCRSLTSLSTSI--HLESLKTLILSGCSNLM--KLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL  154 (492)
Q Consensus        79 ~~~~l~~lp~~~--~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l  154 (492)
                      ++. +..++...  ....++.++...+....  ..+..+..+++|+++++.+|... .+|..  .+++|+.|++++|...
T Consensus       109 ~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         109 ENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKIT  184 (305)
T ss_dssp             SSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCC
T ss_pred             ccc-hhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCC
Confidence            875 55555433  56778888887754332  33456888999999999998654 45543  3679999999998888


Q ss_pred             CCcccccCCcccccccccccccccccc-cccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchh----
Q 043408          155 QRLPNELGNLEALKELKAEGIAIREVP-SSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPES----  227 (492)
Q Consensus       155 ~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~----  227 (492)
                      ...+..+..++.++.|++++|.+..++ ..+..+++|++|++++++  .+|..+..+++|+.|+|++|+++.++..    
T Consensus       185 ~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~  264 (305)
T d1xkua_         185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  264 (305)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             CCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccC
Confidence            778888999999999999999999774 567889999999999986  6888999999999999999999987642    


Q ss_pred             ---hhcCcccccccccccc
Q 043408          228 ---IICLSHLYWLRISYCE  243 (492)
Q Consensus       228 ---l~~l~~L~~L~L~~c~  243 (492)
                         ...+.+|+.|+|++|+
T Consensus       265 ~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         265 PGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SSCCTTSCCCSEEECCSSS
T ss_pred             cchhcccCCCCEEECCCCc
Confidence               3456889999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.1e-18  Score=174.23  Aligned_cols=249  Identities=21%  Similarity=0.313  Sum_probs=195.2

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCc--------------------
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLL--------------------   60 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~--------------------   60 (492)
                      +|++|++++|+|+.++ .++.+++|++|++++|.+. .++.++++++|+.|++.++....                    
T Consensus        67 nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~-~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  144 (384)
T d2omza2          67 NLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI  144 (384)
T ss_dssp             TCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEE
T ss_pred             CCCEEeCcCCcCCCCc-cccCCcccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence            6899999999999997 4889999999999999864 56679999999999998653211                    


Q ss_pred             -------------------------------------------cccccccCCcCCcEEeccCCCCCcccCCccCCCCCCE
Q 043408           61 -------------------------------------------ETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKT   97 (492)
Q Consensus        61 -------------------------------------------~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~   97 (492)
                                                                 ........+++++.+++++|. +..++....+++|++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~-i~~~~~~~~~~~L~~  223 (384)
T d2omza2         145 SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-ISDITPLGILTNLDE  223 (384)
T ss_dssp             CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCE
T ss_pred             cccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCc-cCCCCcccccCCCCE
Confidence                                                       001224456788999998875 555555457889999


Q ss_pred             EEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccc
Q 043408           98 LILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAI  177 (492)
Q Consensus        98 L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i  177 (492)
                      |++++|. +..+ +.+..+++|+.|++.+|...+ ++ .+..+++|++|+++++.. ..++ .+..+..++.+++..+.+
T Consensus       224 L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l~~~~l-~~~~-~~~~~~~l~~l~~~~n~l  297 (384)
T d2omza2         224 LSLNGNQ-LKDI-GTLASLTNLTDLDLANNQISN-LA-PLSGLTKLTELKLGANQI-SNIS-PLAGLTALTNLELNENQL  297 (384)
T ss_dssp             EECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCC-CCCG-GGTTCTTCSEEECCSSCC
T ss_pred             EECCCCC-CCCc-chhhcccccchhccccCccCC-CC-cccccccCCEeeccCccc-CCCC-cccccccccccccccccc
Confidence            9999974 4444 468899999999999987654 33 378899999999998654 4444 367788899999999998


Q ss_pred             cccccccccCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccccccccccccCCCC--Cc
Q 043408          178 REVPSSIVCLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPEL--PC  253 (492)
Q Consensus       178 ~~lp~~~~~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~~  253 (492)
                      ..++ .+..+++++.|+++++.  .++ .+..+++|++|++++|+++.++ .+..+++|++|++++| .++.++++  .+
T Consensus       298 ~~~~-~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~  373 (384)
T d2omza2         298 EDIS-PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLT  373 (384)
T ss_dssp             SCCG-GGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCT
T ss_pred             cccc-ccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCC-cCCCChhhccCC
Confidence            8765 47888999999998875  343 4788999999999999999887 5899999999999987 46666643  35


Q ss_pred             ccceeeccc
Q 043408          254 DLSDIEAHC  262 (492)
Q Consensus       254 sL~~L~~~~  262 (492)
                      +|+.|++++
T Consensus       374 ~L~~L~L~~  382 (384)
T d2omza2         374 RITQLGLND  382 (384)
T ss_dssp             TCSEEECCC
T ss_pred             CCCEeeCCC
Confidence            677776654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.5e-19  Score=169.31  Aligned_cols=195  Identities=21%  Similarity=0.140  Sum_probs=116.5

Q ss_pred             ceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            2 LVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         2 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +.+++.++++++.+|.++.  ++|++|+|++|.+....+ .|.++++|++|+|++| .+..++ .++.+++|++|+|++|
T Consensus        12 ~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQ-VDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             CCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEE-CCSCCTTCCEEECCSS
T ss_pred             CeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccc-cccccc-cccccccccccccccc
Confidence            3455666677777765553  466777777766543222 2666777777777665 344444 3456666777777666


Q ss_pred             CCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccc
Q 043408           81 RSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPN  159 (492)
Q Consensus        81 ~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~  159 (492)
                      . +...+..+ .+++|+.|+++++......+..+..+.++++|++.+|......+..+..+++|+.|++++|...+..+.
T Consensus        88 ~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~  166 (266)
T d1p9ag_          88 Q-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG  166 (266)
T ss_dssp             C-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             c-ccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCcc
Confidence            4 44444433 566666666666544443444455666666666666655444444455566666666666544443344


Q ss_pred             ccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccc
Q 043408          160 ELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       160 ~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~  222 (492)
                      .++.+++|+.|++++|+++.+|.                     .+..+++|+.|+|++|.+.
T Consensus       167 ~~~~l~~L~~L~Ls~N~L~~lp~---------------------~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         167 LLNGLENLDTLLLQENSLYTIPK---------------------GFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCT---------------------TTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccceeecccCCCcccCh---------------------hHCCCCCCCEEEecCCCCC
Confidence            45666666666666666665554                     4556777888888888764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.9e-19  Score=169.53  Aligned_cols=217  Identities=21%  Similarity=0.216  Sum_probs=115.4

Q ss_pred             EEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCC
Q 043408            5 LEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSL   83 (492)
Q Consensus         5 L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l   83 (492)
                      ++.++.+++.+|..+.  .++++|+|++|++.+..+. |.++++|++|+++++......+..+..+..++.+....+..+
T Consensus        16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            4555666666665543  4567777777665432222 666777777777665443333334445566666665555545


Q ss_pred             cccCCcc--CCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCccccc
Q 043408           84 TSLSTSI--HLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNEL  161 (492)
Q Consensus        84 ~~lp~~~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l  161 (492)
                      ..++...  ++++|++|++++|......+..+...++|+.+++.+|......+..+..+++|+.|++++|......+..+
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f  173 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF  173 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhh
Confidence            5543322  55666666666654333333345555566666666655443334445555556666666543332223445


Q ss_pred             CCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccc-hhhhcCccccccccc
Q 043408          162 GNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIP-ESIICLSHLYWLRIS  240 (492)
Q Consensus       162 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~  240 (492)
                      ..+++|+.+++++|++..+                    .|..+..+++|+.|++++|.++.++ ..+..+++|++|+++
T Consensus       174 ~~l~~L~~l~l~~N~l~~i--------------------~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~  233 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVAHV--------------------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN  233 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEE--------------------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred             ccccccchhhhhhcccccc--------------------ChhHhhhhhhcccccccccccccccccccccccccCEEEec
Confidence            5555555555555555543                    2344455555555555555555433 344555555555555


Q ss_pred             ccc
Q 043408          241 YCE  243 (492)
Q Consensus       241 ~c~  243 (492)
                      +|+
T Consensus       234 ~N~  236 (284)
T d1ozna_         234 DNP  236 (284)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-18  Score=166.22  Aligned_cols=197  Identities=22%  Similarity=0.238  Sum_probs=154.9

Q ss_pred             CCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCcccc-ccccCCcCCcEEeccCCCCCcccCCccCCCCCCEE
Q 043408           21 RLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETH-SSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTL   98 (492)
Q Consensus        21 ~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~-~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L   98 (492)
                      ....+..++.+++.+. .+|. +.  ++|++|+|++|. +..++ ..+..+++|++|+|++|. ++.++....+++|++|
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCc-CCCcCHHHhhcccccccccccccc-cccccccccccccccc
Confidence            3455667788887644 5663 43  689999999965 44454 568899999999999985 7777776688999999


Q ss_pred             EeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccc
Q 043408           99 ILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR  178 (492)
Q Consensus        99 ~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~  178 (492)
                      ++++| .+...+..+.++++|++|++++|...+..+..+..+.++++|++++|....-.+..+..+++|+.+++++|+++
T Consensus        83 ~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          83 DLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             ECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccccc-cccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            99986 46667778888889999999888777766677778888888888886544433455667788888888888877


Q ss_pred             ccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCcccccccccccc
Q 043408          179 EVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCE  243 (492)
Q Consensus       179 ~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~  243 (492)
                      .++.                    ..+..+++|++|+|++|+++.+|..+..+++|+.|+|++|+
T Consensus       162 ~~~~--------------------~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         162 ELPA--------------------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCCT--------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccCc--------------------cccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            6653                    34677899999999999999999999999999999999986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.5e-18  Score=167.18  Aligned_cols=200  Identities=22%  Similarity=0.233  Sum_probs=164.5

Q ss_pred             CceEEEccCCCccccc-ccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccc-cccccCCcCCcEEec
Q 043408            1 NLVSLEMPHSSIKQLW-KGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLET-HSSIQYLNKLIVLNL   77 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~-~~si~~L~~L~~L~L   77 (492)
                      ++++|+|++|+|+.++ ..+..+++|++|+++++.+....+. +...+.++++....+..+..+ +..+..+++|+.|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            4689999999999998 4689999999999999986654444 677899999988877777766 456888999999999


Q ss_pred             cCCCCCcccCCc-c-CCCCCCEEEeeCCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408           78 EHCRSLTSLSTS-I-HLESLKTLILSGCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL  154 (492)
Q Consensus        78 ~~~~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l  154 (492)
                      ++|.. ..++.. . .+.+|+.++++++. ++.+| ..+..+++|+.|++++|......+..+.++++|+.+++++|...
T Consensus       113 ~~n~~-~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         113 DRCGL-QELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             TTSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCccc-ccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            99874 444332 3 78999999999964 55554 56889999999999999876666778889999999999998877


Q ss_pred             CCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccc
Q 043408          155 QRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       155 ~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~  222 (492)
                      +..|..++.+++|+.|++++|.+..++.                    ..++.+++|+.|+|++|.+.
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~--------------------~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPT--------------------EALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCH--------------------HHHTTCTTCCEEECCSSCEE
T ss_pred             ccChhHhhhhhhcccccccccccccccc--------------------cccccccccCEEEecCCCCC
Confidence            7778899999999999999999987764                    34566777888888888766

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=9.9e-17  Score=157.52  Aligned_cols=248  Identities=20%  Similarity=0.193  Sum_probs=152.0

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|+|++++++.+|+.   .++|++|+|++|++. .+|+.  ..+|++|++.+|. +..++. +  .+.|++|++++|
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~-~lp~~--~~~L~~L~l~~n~-l~~l~~-l--p~~L~~L~L~~n  108 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLT-ELPEL--PQSLKSLLVDNNN-LKALSD-L--PPLLEYLGVSNN  108 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCS-SCCCC--CTTCCEEECCSSC-CSCCCS-C--CTTCCEEECCSS
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCc-ccccc--hhhhhhhhhhhcc-cchhhh-h--cccccccccccc
Confidence            478999999999999864   568999999998754 66753  5689999999864 334432 1  146999999987


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcc------------------cCccccCCCCCcEEEcccCCCCCcc---------
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMK------------------LPSSIERLSSLILLNLRNCSRLEGL---------  133 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~------------------lp~~i~~l~~L~~L~L~~~~~l~~l---------  133 (492)
                      . +..+|....+++|++|+++++.....                  ....+..++.++.|++.+|......         
T Consensus       109 ~-l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l  187 (353)
T d1jl5a_         109 Q-LEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI  187 (353)
T ss_dssp             C-CSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             c-cccccchhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccc
Confidence            6 77888766899999999988653221                  1122344555666665554432210         


Q ss_pred             ---------ccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCC------
Q 043408          134 ---------PSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESF------  198 (492)
Q Consensus       134 ---------p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~------  198 (492)
                               ......++.|+.+++++|. ...++...   .++..+.+.++.+...+....   .+....+..+      
T Consensus       188 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~l~  260 (353)
T d1jl5a_         188 VAGNNILEELPELQNLPFLTTIYADNNL-LKTLPDLP---PSLEALNVRDNYLTDLPELPQ---SLTFLDVSENIFSGLS  260 (353)
T ss_dssp             ECCSSCCSSCCCCTTCTTCCEEECCSSC-CSSCCSCC---TTCCEEECCSSCCSCCCCCCT---TCCEEECCSSCCSEES
T ss_pred             cccccccccccccccccccccccccccc-cccccccc---ccccccccccccccccccccc---cccccccccccccccc
Confidence                     0112234444555554432 22222221   222333333333322222111   1111111110      


Q ss_pred             -------------cCCccccCCCCCCcEEecCCCcccccchhhhcCccccccccccccccccCCCCCcccceeecccccc
Q 043408          199 -------------KELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAHCCSS  265 (492)
Q Consensus       199 -------------~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~~~~C~~  265 (492)
                                   ..++.....+++|++|+|++|+++.+|..   +++|+.|++++| .++++|+.+.+|++|++++|+ 
T Consensus       261 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L~~N~-  335 (353)
T d1jl5a_         261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYNP-  335 (353)
T ss_dssp             CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-
T ss_pred             cccchhcccccccCccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCC-cCCccccccCCCCEEECcCCc-
Confidence                         02233334567899999999999988854   568889999887 478899988899999998886 


Q ss_pred             cccccc
Q 043408          266 LEALSG  271 (492)
Q Consensus       266 L~~l~~  271 (492)
                      ++.++.
T Consensus       336 L~~lp~  341 (353)
T d1jl5a_         336 LREFPD  341 (353)
T ss_dssp             CSSCCC
T ss_pred             CCCCCc
Confidence            777764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=9.3e-17  Score=149.18  Aligned_cols=190  Identities=23%  Similarity=0.267  Sum_probs=110.7

Q ss_pred             ccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEE
Q 043408           19 VQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTL   98 (492)
Q Consensus        19 ~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L   98 (492)
                      ...+.+|+.|++.+|.+ +.++++..+++|++|++++|.. ..++ .+..+++|+++++++|. ++.++....+++|+.+
T Consensus        37 ~~~l~~L~~L~l~~~~i-~~l~~l~~l~~L~~L~ls~n~i-~~~~-~l~~l~~l~~l~~~~n~-~~~i~~l~~l~~L~~l  112 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDNQI-TDLA-PLKNLTKITELELSGNP-LKNVSAIAGLQSIKTL  112 (227)
T ss_dssp             HHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCC-CCCG-GGTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEE
T ss_pred             HHHcCCcCEEECCCCCC-CcchhHhcCCCCcEeecCCcee-eccc-ccccccccccccccccc-cccccccccccccccc
Confidence            34566777777777654 3455666777777777776543 3332 25666677777776654 4445443466666666


Q ss_pred             EeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccccccccccccccc
Q 043408           99 ILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIR  178 (492)
Q Consensus        99 ~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~  178 (492)
                      ++++|....  ...+...+.++.+.+.++......  .+...++|++|++++|.... .+ .++.+++|+.|++++|.++
T Consensus       113 ~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         113 DLTSTQITD--VTPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSD-LT-PLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             ECTTSCCCC--CGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--cchhccccchhhhhchhhhhchhh--hhcccccccccccccccccc-ch-hhcccccceecccCCCccC
Confidence            666643322  123445556666666554433221  23445556666665543322 21 2455555555555555554


Q ss_pred             ccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcCcccccccccc
Q 043408          179 EVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISY  241 (492)
Q Consensus       179 ~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~  241 (492)
                      .++                      .++.+++|++|+|++|+++.++ .++++++|+.|++++
T Consensus       187 ~l~----------------------~l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         187 DIS----------------------PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCG----------------------GGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred             CCh----------------------hhcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence            433                      2456778888888888888776 477888888888765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.6e-16  Score=145.13  Aligned_cols=184  Identities=21%  Similarity=0.282  Sum_probs=146.4

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|++.+++|+++ +++..+++|++|++++|.+. .++.+.++++|+++++++|. .+.++ .+..+++|+.+++++|
T Consensus        42 ~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~-~~~~l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          42 GITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             TCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGGGTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTS
T ss_pred             CcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceee-cccccccccccccccccccc-ccccc-cccccccccccccccc
Confidence            589999999999998 58999999999999999754 45568999999999999875 34444 5788999999999987


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                      . ...++.....+.++.+.++++....  ...+..+++|++|++.+|.....  ..+.++++|+.|++++| .+..++. 
T Consensus       118 ~-~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n-~l~~l~~-  190 (227)
T d1h6ua2         118 Q-ITDVTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN-KISDISP-  190 (227)
T ss_dssp             C-CCCCGGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCCCGG-
T ss_pred             c-ccccchhccccchhhhhchhhhhch--hhhhccccccccccccccccccc--hhhcccccceecccCCC-ccCCChh-
Confidence            6 4444444578899999998865433  23477889999999999876543  23789999999999997 5566654 


Q ss_pred             cCCcccccccccccccccccccccccCCCCcccccC
Q 043408          161 LGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFE  196 (492)
Q Consensus       161 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~  196 (492)
                      ++.+++|++|++++|++++++. +..+++|+.|+++
T Consensus       191 l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         191 LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence            7889999999999999998864 5555666555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.65  E-value=6.7e-15  Score=144.17  Aligned_cols=237  Identities=24%  Similarity=0.241  Sum_probs=159.4

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|+|++|+|+.+|+.   +.+|+.|++++|.+. .++++  .++|++|++++|. +..+|. ++.+++|++|++++|
T Consensus        59 ~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~-~l~~l--p~~L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          59 HLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK-ALSDL--PPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             TCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-CCCSC--CTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSS
T ss_pred             CCCEEECCCCCCcccccc---hhhhhhhhhhhcccc-hhhhh--ccccccccccccc-cccccc-hhhhccceeeccccc
Confidence            589999999999999865   457899999988653 44443  2569999999864 566764 678999999999886


Q ss_pred             CCCcccCC--------------------ccCCCCCCEEEeeCCCCCc------------------ccCccccCCCCCcEE
Q 043408           81 RSLTSLST--------------------SIHLESLKTLILSGCSNLM------------------KLPSSIERLSSLILL  122 (492)
Q Consensus        81 ~~l~~lp~--------------------~~~l~~L~~L~L~~c~~l~------------------~lp~~i~~l~~L~~L  122 (492)
                      ... ..+.                    ...++.++.|.+.++....                  .....+..++.|+.+
T Consensus       131 ~~~-~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l  209 (353)
T d1jl5a_         131 SLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI  209 (353)
T ss_dssp             CCS-CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEE
T ss_pred             ccc-ccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccccccc
Confidence            522 1111                    1146677888877654322                  112235678899999


Q ss_pred             EcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccc-----------------cccccccccccccccccc
Q 043408          123 NLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEAL-----------------KELKAEGIAIREVPSSIV  185 (492)
Q Consensus       123 ~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L-----------------~~L~l~~~~i~~lp~~~~  185 (492)
                      ++++|... .++.   ...++..+.+..+... ..+.....+...                 ...++..+.+..+   ..
T Consensus       210 ~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~  281 (353)
T d1jl5a_         210 YADNNLLK-TLPD---LPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL---CD  281 (353)
T ss_dssp             ECCSSCCS-SCCS---CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE---CC
T ss_pred             cccccccc-cccc---cccccccccccccccc-ccccccccccccccccccccccccccchhcccccccCccccc---cc
Confidence            99987543 3433   2445677777664332 222222221111                 1111222222222   23


Q ss_pred             cCCCCcccccCCCc--CCccccCCCCCCcEEecCCCcccccchhhhcCccccccccccccccccCCCCCcccceeecc
Q 043408          186 CLKNLGRLSFESFK--ELPECLGQLSSLRILFLDKNNFERIPESIICLSHLYWLRISYCERLKSLPELPCDLSDIEAH  261 (492)
Q Consensus       186 ~l~~L~~L~l~~~~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~~~  261 (492)
                      .+++|++|++++|.  .+|.   .+++|+.|+|++|+++.+|..   +.+|+.|++++|+ ++.+|++|.+|+.|.+.
T Consensus       282 ~~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~-L~~lp~~~~~L~~L~~~  352 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNP-LREFPDIPESVEDLRMN  352 (353)
T ss_dssp             CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCCCCTTCCEEECC
T ss_pred             cCCCCCEEECCCCccCcccc---ccCCCCEEECCCCcCCccccc---cCCCCEEECcCCc-CCCCCccccccCeeECc
Confidence            46789999999885  4664   467999999999999999853   4689999999987 89999999999998764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.1e-15  Score=140.91  Aligned_cols=218  Identities=18%  Similarity=0.157  Sum_probs=104.1

Q ss_pred             EEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCC
Q 043408            4 SLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         4 ~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~   81 (492)
                      .++.++++++++|.++.  +++++|+|++|.+....++ |.++++|++|+|++|.....++. .+..+++++.+.+..+.
T Consensus        12 ~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             EEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             EEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            34444555555554432  3555555555543322221 45555555555555544433322 33444555555444433


Q ss_pred             CCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccc-cccCCCCCCCEEeccCCCCCCCcc-c
Q 043408           82 SLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLP-SKICKLKSLERLNLSGCSNLQRLP-N  159 (492)
Q Consensus        82 ~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp-~  159 (492)
                      .+..++.                      ..+.++++|++|++.+|......+ ..+..+..+..+...+ ..+..++ .
T Consensus        90 ~l~~~~~----------------------~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n-~~l~~i~~~  146 (242)
T d1xwdc1          90 NLLYINP----------------------EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-INIHTIERN  146 (242)
T ss_dssp             TCCEECT----------------------TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESC-TTCCEECTT
T ss_pred             ccccccc----------------------ccccccccccccccchhhhcccccccccccccccccccccc-ccccccccc
Confidence            3333332                      224445555555555443322111 1111222222222222 2222222 2


Q ss_pred             ccCCc-ccccccccccccccccccccccCCCCcccc-cCCCc--CCcc-ccCCCCCCcEEecCCCcccccch-hhhcCcc
Q 043408          160 ELGNL-EALKELKAEGIAIREVPSSIVCLKNLGRLS-FESFK--ELPE-CLGQLSSLRILFLDKNNFERIPE-SIICLSH  233 (492)
Q Consensus       160 ~l~~l-~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~-l~~~~--~lp~-~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~  233 (492)
                      .+..+ ..++.|++++|+++.++.......++..+. +.++.  ++|. .+..+++|+.|+|++|+++.+|. .+.++++
T Consensus       147 ~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  226 (242)
T d1xwdc1         147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK  226 (242)
T ss_dssp             SSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred             ccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcc
Confidence            22222 245666666666666665544444444433 22221  3443 36778888888888888888765 4566677


Q ss_pred             ccccccccccccccCC
Q 043408          234 LYWLRISYCERLKSLP  249 (492)
Q Consensus       234 L~~L~L~~c~~l~~lp  249 (492)
                      |+.+++.+   ++.+|
T Consensus       227 L~~l~~~~---l~~lp  239 (242)
T d1xwdc1         227 LRARSTYN---LKKLP  239 (242)
T ss_dssp             EESSSEES---SSCSC
T ss_pred             cccCcCCC---CCcCC
Confidence            77766644   44444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=6.6e-15  Score=134.89  Aligned_cols=179  Identities=21%  Similarity=0.271  Sum_probs=138.0

Q ss_pred             ccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCccc
Q 043408            7 MPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSL   86 (492)
Q Consensus         7 L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~l   86 (492)
                      +..+.+.... ....+.+|+.|++++|.+ +.++.+..+++|++|+|++|. +..++ .++.+++|++|++++|. ++.+
T Consensus        31 l~~~~~~~~~-~~~~L~~L~~L~l~~~~i-~~l~~l~~l~~L~~L~L~~n~-i~~l~-~~~~l~~L~~L~l~~n~-i~~l  105 (210)
T d1h6ta2          31 LKKKSVTDAV-TQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNK-LTDIK-PLANLKNLGWLFLDENK-VKDL  105 (210)
T ss_dssp             TTCSCTTSEE-CHHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC-CCCG
T ss_pred             hCcCccCCcc-CHHHhcCccEEECcCCCC-CCchhHhhCCCCCEEeCCCcc-ccCcc-ccccCcccccccccccc-cccc
Confidence            3444444332 123578899999999865 456678889999999999974 44555 46889999999999875 7777


Q ss_pred             CCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccc
Q 043408           87 STSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEA  166 (492)
Q Consensus        87 p~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~  166 (492)
                      +...++++|+.|++++|... .+ ..+..+++|+.+++++|....  +..+..+++|+++++++|.. ..++. ++++++
T Consensus       106 ~~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l-~~i~~-l~~l~~  179 (210)
T d1h6ta2         106 SSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTK  179 (210)
T ss_dssp             GGGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCC-CCCGG-GTTCTT
T ss_pred             cccccccccccccccccccc-cc-ccccccccccccccccccccc--cccccccccccccccccccc-ccccc-ccCCCC
Confidence            76558999999999987543 33 468889999999999887543  23467789999999999754 45553 788999


Q ss_pred             ccccccccccccccccccccCCCCcccccCC
Q 043408          167 LKELKAEGIAIREVPSSIVCLKNLGRLSFES  197 (492)
Q Consensus       167 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~  197 (492)
                      |++|++++|.++++| .+..+++|+.|++++
T Consensus       180 L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         180 LQNLYLSKNHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             CCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence            999999999999987 588999999998864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.4e-15  Score=139.46  Aligned_cols=200  Identities=23%  Similarity=0.294  Sum_probs=147.6

Q ss_pred             CceEEEccCCCcccccc-cccCCCCCcEEEccCCCCCCCCCC--CCCCCCccEEEeeCcccCcccc-ccccCCcCCcEEe
Q 043408            1 NLVSLEMPHSSIKQLWK-GVQRLVNLKHLNLSHSEHLTKIPD--LSLATNLESLTFRGCTSLLETH-SSIQYLNKLIVLN   76 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~--l~~~~nL~~L~L~~c~~l~~~~-~si~~L~~L~~L~   76 (492)
                      ++++|+|++|+|+.++. .+..+++|++|+|++|.+...++.  +.+++++++|.+..+..+..++ ..+..+++|+.|+
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            57899999999999985 578899999999999988765543  7889999999998876666555 4578899999999


Q ss_pred             ccCCCCCcccCCccCCCCCCEEEe--eCCCCCcccC-ccccCC-CCCcEEEcccCCCCCccccccCCCCCCCEEeccCCC
Q 043408           77 LEHCRSLTSLSTSIHLESLKTLIL--SGCSNLMKLP-SSIERL-SSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCS  152 (492)
Q Consensus        77 L~~~~~l~~lp~~~~l~~L~~L~L--~~c~~l~~lp-~~i~~l-~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~  152 (492)
                      +++|. +...+....+.+++.+..  .++..+..++ ..+..+ ..++.|++.+|... .++.......+++.+....++
T Consensus       110 l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         110 ISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNN  187 (242)
T ss_dssp             EESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCT
T ss_pred             cchhh-hcccccccccccccccccccccccccccccccccccccccceeeeccccccc-ccccccccchhhhcccccccc
Confidence            99975 666655445555555532  2334455554 345554 47889999886554 566666677777777666666


Q ss_pred             CCCCccc-ccCCcccccccccccccccccccc-cccCCCCcccccCCCcCCc
Q 043408          153 NLQRLPN-ELGNLEALKELKAEGIAIREVPSS-IVCLKNLGRLSFESFKELP  202 (492)
Q Consensus       153 ~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~lp  202 (492)
                      .++.+|. .+..+++|+.|++++|+++.+|.. +.++++|+.+++.+.+.+|
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESSSCSC
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCCCcCC
Confidence            7777875 478899999999999999988763 5666666666665554444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=4.7e-15  Score=135.93  Aligned_cols=162  Identities=23%  Similarity=0.315  Sum_probs=85.9

Q ss_pred             CCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEc
Q 043408           45 ATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNL  124 (492)
Q Consensus        45 ~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L  124 (492)
                      +.+|++|++++|. +..++ .+..+++|++|++++|. ++.++....+++|+.|++++| .+..++ .+.++++|+.|++
T Consensus        45 L~~L~~L~l~~~~-i~~l~-~l~~l~~L~~L~L~~n~-i~~l~~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCC-CCCch-hHhhCCCCCEEeCCCcc-ccCccccccCccccccccccc-cccccc-ccccccccccccc
Confidence            4456666666543 22232 35556666666666653 444444335666666666654 334443 3555666666666


Q ss_pred             ccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCc--CCc
Q 043408          125 RNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFK--ELP  202 (492)
Q Consensus       125 ~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--~lp  202 (492)
                      .+|.... + ..+..+++|+.+++++|... .. ..+..+++|+.+++++|.+..++. +..+++|+.|++++|.  +++
T Consensus       120 ~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~-~~-~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         120 EHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             TTSCCCC-C-GGGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred             ccccccc-c-cccccccccccccccccccc-cc-cccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCCh
Confidence            6554322 2 23455566666666554322 22 234455566666666666655543 5556666666666553  233


Q ss_pred             cccCCCCCCcEEecC
Q 043408          203 ECLGQLSSLRILFLD  217 (492)
Q Consensus       203 ~~l~~l~~L~~L~L~  217 (492)
                       .+..+++|+.|+|+
T Consensus       195 -~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         195 -ALAGLKNLDVLELF  208 (210)
T ss_dssp             -GGTTCTTCSEEEEE
T ss_pred             -hhcCCCCCCEEEcc
Confidence             35556666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1e-14  Score=132.38  Aligned_cols=175  Identities=19%  Similarity=0.289  Sum_probs=127.3

Q ss_pred             ccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCccc
Q 043408            7 MPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSL   86 (492)
Q Consensus         7 L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~l   86 (492)
                      +..++++... ....+.+|+.|+++++.+ +.+++++.+++|++|++++|. +..+++ ++.+++|++|++++|. +..+
T Consensus        25 l~~~~~~~~~-~~~~l~~l~~L~l~~~~i-~~l~~l~~l~nL~~L~Ls~N~-l~~~~~-l~~l~~L~~L~l~~n~-~~~~   99 (199)
T d2omxa2          25 LGKTNVTDTV-SQTDLDQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQ-IADI   99 (199)
T ss_dssp             TTCSSTTSEE-CHHHHTTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCC
T ss_pred             hCCCCCCCcc-CHHHhcCCCEEECCCCCC-CCccccccCCCcCcCcccccc-ccCccc-ccCCcccccccccccc-cccc
Confidence            4444554432 224578899999998875 456778889999999999874 555554 8889999999998876 5566


Q ss_pred             CCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCccc
Q 043408           87 STSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEA  166 (492)
Q Consensus        87 p~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~  166 (492)
                      +...++++|+.|++++|....  ...+..+++|+.|++++|... .++ .+..+++|++|++.+|. +..++ .++.+++
T Consensus       100 ~~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~-l~~l~-~l~~l~~  173 (199)
T d2omxa2         100 TPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQ-VTDLK-PLANLTT  173 (199)
T ss_dssp             GGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTT
T ss_pred             ccccccccccccccccccccc--ccccchhhhhHHhhhhhhhhc-ccc-ccccccccccccccccc-ccCCc-cccCCCC
Confidence            654588899999998865443  235778889999999887643 343 57788899999998864 44554 4788888


Q ss_pred             ccccccccccccccccccccCCCCccc
Q 043408          167 LKELKAEGIAIREVPSSIVCLKNLGRL  193 (492)
Q Consensus       167 L~~L~l~~~~i~~lp~~~~~l~~L~~L  193 (492)
                      |+.|++++|++++++ .+..+++|+.|
T Consensus       174 L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         174 LERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             CCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             CCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            999999998888775 35666666543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=2.5e-14  Score=129.85  Aligned_cols=159  Identities=26%  Similarity=0.374  Sum_probs=128.5

Q ss_pred             CceEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            1 NLVSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         1 nL~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      +|++|++.+++|+.+ +++..+++|++|+|++|++ +.++.++++++|++|++++|.. ..++ .+..+++|+.|++++|
T Consensus        41 ~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~l-~~~~~l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          41 QVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQL-TDITPLKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEECCSS
T ss_pred             CCCEEECCCCCCCCc-cccccCCCcCcCccccccc-cCcccccCCccccccccccccc-cccc-cccccccccccccccc
Confidence            478999999999988 5789999999999999975 4566699999999999999754 4444 4889999999999987


Q ss_pred             CCCcccCCccCCCCCCEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccc
Q 043408           81 RSLTSLSTSIHLESLKTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNE  160 (492)
Q Consensus        81 ~~l~~lp~~~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~  160 (492)
                      .. ...+....+++|+.|++++|. +..+ +.+..+++|++|++.+|+... ++ .++++++|++|++++|. +..++ .
T Consensus       117 ~~-~~~~~~~~l~~L~~L~l~~n~-l~~~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~-i~~i~-~  189 (199)
T d2omxa2         117 QI-TDIDPLKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNK-VSDIS-V  189 (199)
T ss_dssp             CC-CCCGGGTTCTTCSEEECCSSC-CCCC-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSC-CCCCG-G
T ss_pred             cc-ccccccchhhhhHHhhhhhhh-hccc-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCC-CCCCc-c
Confidence            64 444444589999999999975 4444 468899999999999987654 44 48899999999999974 56665 4


Q ss_pred             cCCccccccc
Q 043408          161 LGNLEALKEL  170 (492)
Q Consensus       161 l~~l~~L~~L  170 (492)
                      ++.+++|+.|
T Consensus       190 l~~L~~L~~L  199 (199)
T d2omxa2         190 LAKLTNLESL  199 (199)
T ss_dssp             GGGCTTCSEE
T ss_pred             ccCCCCCCcC
Confidence            6777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.2e-15  Score=146.64  Aligned_cols=218  Identities=18%  Similarity=0.200  Sum_probs=124.3

Q ss_pred             eEEEccCCCcc-cccccccCCCCCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCcc-ccccccCCcCCcEEeccCC
Q 043408            3 VSLEMPHSSIK-QLWKGVQRLVNLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLE-THSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         3 ~~L~L~~s~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~-~~~si~~L~~L~~L~L~~~   80 (492)
                      +.|||+++.+. .....+.. ..+..+.++.+.............+|++|+|++|..... +...+..+++|++|++++|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~   81 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL   81 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence            36888887764 11111111 234566666554333233345567889999988765433 3344567889999999988


Q ss_pred             CCCcccCCcc-CCCCCCEEEeeCCCCCcc--cCccccCCCCCcEEEcccCCCCCc--cccccCC-CCCCCEEeccCCCC-
Q 043408           81 RSLTSLSTSI-HLESLKTLILSGCSNLMK--LPSSIERLSSLILLNLRNCSRLEG--LPSKICK-LKSLERLNLSGCSN-  153 (492)
Q Consensus        81 ~~l~~lp~~~-~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~L~~~~~l~~--lp~~i~~-l~~L~~L~Ls~c~~-  153 (492)
                      ..-...+..+ .+++|++|++++|..++.  +.....++++|++|++++|..+..  +...+.. .++|+.|++++|.. 
T Consensus        82 ~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  161 (284)
T d2astb2          82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN  161 (284)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccc
Confidence            6322222222 678899999999877753  233346788999999998876542  2222333 46899999988632 


Q ss_pred             CC--CcccccCCccccccccccccc-cc-ccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCc-cc-ccchh
Q 043408          154 LQ--RLPNELGNLEALKELKAEGIA-IR-EVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNN-FE-RIPES  227 (492)
Q Consensus       154 l~--~lp~~l~~l~~L~~L~l~~~~-i~-~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~-l~-~lp~~  227 (492)
                      +.  .+......+++|++|+++++. ++ .....                     +..+++|++|+|++|. ++ .-...
T Consensus       162 i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~---------------------l~~~~~L~~L~L~~C~~i~~~~l~~  220 (284)
T d2astb2         162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE---------------------FFQLNYLQHLSLSRCYDIIPETLLE  220 (284)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG---------------------GGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred             cccccccccccccccccccccccccCCCchhhhh---------------------hcccCcCCEEECCCCCCCChHHHHH
Confidence            22  122233445566666666542 32 22223                     3344555555555543 33 22233


Q ss_pred             hhcCccccccccccc
Q 043408          228 IICLSHLYWLRISYC  242 (492)
Q Consensus       228 l~~l~~L~~L~L~~c  242 (492)
                      +.++++|+.|++++|
T Consensus       221 L~~~~~L~~L~l~~~  235 (284)
T d2astb2         221 LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             HhcCCCCCEEeeeCC
Confidence            455556666666555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.1e-15  Score=140.74  Aligned_cols=218  Identities=21%  Similarity=0.267  Sum_probs=144.7

Q ss_pred             eEEEccCCCcccccccccCCCCCcEEEccCCCCCCC-CCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCC
Q 043408            3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTK-IPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus         3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~   80 (492)
                      ..+.++.+.+...+.......+|++|||++|.+... +.. +..+++|++|+|++|......+..++.+++|++|++++|
T Consensus        26 ~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          26 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             eEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence            345555555554444455667899999988865433 222 677889999999998766666677888889999999988


Q ss_pred             CCCcc--cCCcc-CCCCCCEEEeeCCCCCcc--cCcccc-CCCCCcEEEcccCCC-CC--ccccccCCCCCCCEEeccCC
Q 043408           81 RSLTS--LSTSI-HLESLKTLILSGCSNLMK--LPSSIE-RLSSLILLNLRNCSR-LE--GLPSKICKLKSLERLNLSGC  151 (492)
Q Consensus        81 ~~l~~--lp~~~-~l~~L~~L~L~~c~~l~~--lp~~i~-~l~~L~~L~L~~~~~-l~--~lp~~i~~l~~L~~L~Ls~c  151 (492)
                      ..++.  +.... .+++|++|++++|..+..  +...+. ..++|+.|++++|.. +.  .+.....++++|++|++++|
T Consensus       106 ~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         106 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             ccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccc
Confidence            77653  22212 678899999998876643  223333 347899999987632 22  23333456788999999988


Q ss_pred             CCCC-CcccccCCcccccccccccc-ccc-ccccccccCCCCcccccCCCcC---CccccCCCCCCcEEecCCCcccc
Q 043408          152 SNLQ-RLPNELGNLEALKELKAEGI-AIR-EVPSSIVCLKNLGRLSFESFKE---LPECLGQLSSLRILFLDKNNFER  223 (492)
Q Consensus       152 ~~l~-~lp~~l~~l~~L~~L~l~~~-~i~-~lp~~~~~l~~L~~L~l~~~~~---lp~~l~~l~~L~~L~L~~n~l~~  223 (492)
                      ..++ .....+.++++|++|++++| .+. +-...++.+++|+.|++.++..   +......+++|+   +..++++.
T Consensus       186 ~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~  260 (284)
T d2astb2         186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTT  260 (284)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCC
T ss_pred             cCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCC
Confidence            7654 45566778889999999885 454 2334567788999999988721   111123455544   45565653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=2.3e-12  Score=115.89  Aligned_cols=148  Identities=18%  Similarity=0.073  Sum_probs=96.9

Q ss_pred             cEEeccCCCCCcccCCccCCCCCCEEEeeCCCCCccc-CccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCC
Q 043408           73 IVLNLEHCRSLTSLSTSIHLESLKTLILSGCSNLMKL-PSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGC  151 (492)
Q Consensus        73 ~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c  151 (492)
                      +.++.+++ .++.+|..+ .+++++|+|++|.....+ +..+.++++|+.|+|++|......+..+..+++|++|+|++|
T Consensus        11 ~~v~Cs~~-~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGR-GLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTS-CCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCC-CcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            45666553 366777654 256777777776544333 345677888888888887777777777778888888888886


Q ss_pred             CCCCCcccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccchhhhcC
Q 043408          152 SNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIPESIICL  231 (492)
Q Consensus       152 ~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l  231 (492)
                      ....-.+..|..+++|++|+|++|+|+.+|.                    ..+..+++|++|+|++|.+........-.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~--------------------~~f~~l~~L~~l~L~~N~~~~~~~~~~~~  148 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMP--------------------GSFEHLNSLTSLNLASNPFNCNCHLAWFA  148 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECT--------------------TSSTTCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCH--------------------HHhcCCcccccccccccccccccchHHHh
Confidence            4443334567778888888888888877764                    34566788888888888876433211111


Q ss_pred             ccccccccccc
Q 043408          232 SHLYWLRISYC  242 (492)
Q Consensus       232 ~~L~~L~L~~c  242 (492)
                      ..++.+.+..+
T Consensus       149 ~~l~~~~l~~~  159 (192)
T d1w8aa_         149 EWLRKKSLNGG  159 (192)
T ss_dssp             HHHHHHCCSGG
T ss_pred             hhhhhhcccCC
Confidence            23444455443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=8.9e-13  Score=118.61  Aligned_cols=126  Identities=17%  Similarity=0.131  Sum_probs=83.4

Q ss_pred             CcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccc-cccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEEEee
Q 043408           25 LKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLET-HSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILS  101 (492)
Q Consensus        25 L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~-~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~  101 (492)
                      .+.++.+++++. .+|. +  .+++++|+|++|.....+ +..++.+++|+.|+|++|......+..+ .+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            457888877644 4553 3  267888888887654434 3456778888888888776443333333 67778888888


Q ss_pred             CCCCCcccC-ccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCC
Q 043408          102 GCSNLMKLP-SSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNL  154 (492)
Q Consensus       102 ~c~~l~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l  154 (492)
                      +|. +..+| ..|.++++|++|+|++|.+....+..+..+++|++|+|++|...
T Consensus        87 ~N~-l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccc-ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            753 44443 45677777777777777665555566677777777777776443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.2e-14  Score=140.55  Aligned_cols=103  Identities=22%  Similarity=0.252  Sum_probs=61.2

Q ss_pred             CceEEEccCCCcccc--cccccCCCCCcEEEccCCCCCCC----CC-CCCCCCCccEEEeeCcccCc----cccccccC-
Q 043408            1 NLVSLEMPHSSIKQL--WKGVQRLVNLKHLNLSHSEHLTK----IP-DLSLATNLESLTFRGCTSLL----ETHSSIQY-   68 (492)
Q Consensus         1 nL~~L~L~~s~i~~l--~~~~~~l~~L~~L~Ls~~~~l~~----~p-~l~~~~nL~~L~L~~c~~l~----~~~~si~~-   68 (492)
                      +|++|||++++|...  .+-+..+++|++|+|++|.+...    +. .+...++|++|+|++|....    .+...+.. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            478888888888732  24455677888888888764321    11 14567778888887764321    11222221 


Q ss_pred             CcCCcEEeccCCCCCcc-----cCCcc-CCCCCCEEEeeCCC
Q 043408           69 LNKLIVLNLEHCRSLTS-----LSTSI-HLESLKTLILSGCS  104 (492)
Q Consensus        69 L~~L~~L~L~~~~~l~~-----lp~~~-~l~~L~~L~L~~c~  104 (492)
                      ..+|++|+|++|. ++.     ++..+ .+++|++|++++|.
T Consensus        83 ~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          83 SCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence            2467888887775 332     22222 56777888877754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.3e-12  Score=111.62  Aligned_cols=122  Identities=20%  Similarity=0.269  Sum_probs=63.7

Q ss_pred             CCCCCcEEEccCCCCCCCCCC-CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc--CCCCCCE
Q 043408           21 RLVNLKHLNLSHSEHLTKIPD-LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI--HLESLKT   97 (492)
Q Consensus        21 ~l~~L~~L~Ls~~~~l~~~p~-l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~--~l~~L~~   97 (492)
                      +..+|+.|+|++|++. .+++ +..+++|++|+|++|. +..++ .+..+++|++|++++|. +..++...  .+++|++
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~-i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSC-CCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCC-CCccC-CcccCcchhhhhccccc-ccCCCcccccccccccc
Confidence            4445556666655532 2333 2445556666666542 33332 35555666666666554 44444432  4566666


Q ss_pred             EEeeCCCCCcccC--ccccCCCCCcEEEcccCCCCCccc----cccCCCCCCCEEec
Q 043408           98 LILSGCSNLMKLP--SSIERLSSLILLNLRNCSRLEGLP----SKICKLKSLERLNL  148 (492)
Q Consensus        98 L~L~~c~~l~~lp--~~i~~l~~L~~L~L~~~~~l~~lp----~~i~~l~~L~~L~L  148 (492)
                      |++++|. +..++  ..+..+++|++|++++|... ..|    ..+..+++|++||-
T Consensus        92 L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          92 LILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             EECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             ceecccc-ccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            6666643 33333  24566666777776666432 222    23556677777763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.1e-12  Score=111.82  Aligned_cols=35  Identities=23%  Similarity=0.198  Sum_probs=23.6

Q ss_pred             ccCCCCCCcEEecCCCcccccch----hhhcCccccccc
Q 043408          204 CLGQLSSLRILFLDKNNFERIPE----SIICLSHLYWLR  238 (492)
Q Consensus       204 ~l~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~  238 (492)
                      .+..+++|+.|++++|.++..|.    .+..+++|+.||
T Consensus       107 ~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         107 PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            34566777888888887776653    456667776665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.16  E-value=3.9e-12  Score=124.80  Aligned_cols=229  Identities=14%  Similarity=0.088  Sum_probs=143.3

Q ss_pred             cccccCCCCCcEEEccCCCCCCC----C-CCCCCCCCccEEEeeCcccCc----------cccccccCCcCCcEEeccCC
Q 043408           16 WKGVQRLVNLKHLNLSHSEHLTK----I-PDLSLATNLESLTFRGCTSLL----------ETHSSIQYLNKLIVLNLEHC   80 (492)
Q Consensus        16 ~~~~~~l~~L~~L~Ls~~~~l~~----~-p~l~~~~nL~~L~L~~c~~l~----------~~~~si~~L~~L~~L~L~~~   80 (492)
                      ...+.....|+.|+|++|.+..+    + ..+...++|+.|++.++..-.          .+...+...++|+.|+|++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            34455577788888887765322    1 235667788888887653211          12233455677888888877


Q ss_pred             CCCc----ccCCcc-CCCCCCEEEeeCCCCCcc----c---------CccccCCCCCcEEEcccCCCCC----ccccccC
Q 043408           81 RSLT----SLSTSI-HLESLKTLILSGCSNLMK----L---------PSSIERLSSLILLNLRNCSRLE----GLPSKIC  138 (492)
Q Consensus        81 ~~l~----~lp~~~-~l~~L~~L~L~~c~~l~~----l---------p~~i~~l~~L~~L~L~~~~~l~----~lp~~i~  138 (492)
                      ..-.    .+...+ ..++|++|++++|.....    +         .......+.|+.|++++|....    .+...+.
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence            5211    122212 567788888887643111    0         0112356778888888765442    2333455


Q ss_pred             CCCCCCEEeccCCCCCCC-----cccccCCccccccccccccccc-----ccccccccCCCCcccccCCCcC-------C
Q 043408          139 KLKSLERLNLSGCSNLQR-----LPNELGNLEALKELKAEGIAIR-----EVPSSIVCLKNLGRLSFESFKE-------L  201 (492)
Q Consensus       139 ~l~~L~~L~Ls~c~~l~~-----lp~~l~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~-------l  201 (492)
                      ..+.|+.|++++|.....     +...+..+++|+.|++++|.+.     .+...+..+++|++|++++|.-       +
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            667888888888754321     2344566778888888888764     3455667788888888888761       2


Q ss_pred             ccccC--CCCCCcEEecCCCccc-----ccchhhh-cCccccccccccccc
Q 043408          202 PECLG--QLSSLRILFLDKNNFE-----RIPESII-CLSHLYWLRISYCER  244 (492)
Q Consensus       202 p~~l~--~l~~L~~L~L~~n~l~-----~lp~~l~-~l~~L~~L~L~~c~~  244 (492)
                      -..+.  ..+.|+.|++++|.++     .+...+. ++++|++|+|++|..
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            22232  3467999999999986     3555564 678999999999764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=5.4e-11  Score=98.89  Aligned_cols=75  Identities=27%  Similarity=0.356  Sum_probs=39.9

Q ss_pred             eEEEccCCCcccccccccCCCCCcEEEccCCCCCCCCC-CCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCC
Q 043408            3 VSLEMPHSSIKQLWKGVQRLVNLKHLNLSHSEHLTKIP-DLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCR   81 (492)
Q Consensus         3 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~   81 (492)
                      |+|+|++|+|+.++ ++..+++|++|++++|.+. .+| .++.+++|++|++++| .+..++ .++.+++|+.|++++|.
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccc-cccccC-ccccccccCeEECCCCc
Confidence            35666666666554 3555666666666666543 333 3555555666665553 233333 34555555555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=8.8e-11  Score=97.54  Aligned_cols=89  Identities=25%  Similarity=0.306  Sum_probs=40.8

Q ss_pred             ccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccccccccccccccccCCCCcc
Q 043408          113 IERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEGIAIREVPSSIVCLKNLGR  192 (492)
Q Consensus       113 i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~  192 (492)
                      ++++++|++|++++|.. ..+|..++.+++|+.|++++| .+..+| .++.+++|+.|++++|.+.+++.          
T Consensus        16 l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~----------   82 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNRLQQSAA----------   82 (124)
T ss_dssp             GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSCCCSSST----------
T ss_pred             cccCCCCCEEECCCCcc-Ccchhhhhhhhcccccccccc-cccccC-ccccccccCeEECCCCccCCCCC----------
Confidence            44444444444444332 234444444444444444443 222333 24444455555555554444332          


Q ss_pred             cccCCCcCCccccCCCCCCcEEecCCCcccc
Q 043408          193 LSFESFKELPECLGQLSSLRILFLDKNNFER  223 (492)
Q Consensus       193 L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~  223 (492)
                               ...+..+++|+.|++++|+++.
T Consensus        83 ---------~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          83 ---------IQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             ---------TGGGGGCTTCCEEECTTSGGGG
T ss_pred             ---------chhhcCCCCCCEEECCCCcCCc
Confidence                     0123455666666666666553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.13  E-value=3.1e-12  Score=125.52  Aligned_cols=221  Identities=15%  Similarity=0.112  Sum_probs=110.3

Q ss_pred             ceEEEccCCCcc-----cccccccCCCCCcEEEccCCCCCCCC---C--------CCCCCCCccEEEeeCcccCcc----
Q 043408            2 LVSLEMPHSSIK-----QLWKGVQRLVNLKHLNLSHSEHLTKI---P--------DLSLATNLESLTFRGCTSLLE----   61 (492)
Q Consensus         2 L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~---p--------~l~~~~nL~~L~L~~c~~l~~----   61 (492)
                      |++|+|++|.|.     .+-..+...++|+.|+++++......   +        .+...++|++|+|++|..-..    
T Consensus        33 l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  112 (344)
T d2ca6a1          33 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP  112 (344)
T ss_dssp             CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHH
T ss_pred             CCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccc
Confidence            566666666653     23344555666666666655432211   0        134456666666666543221    


Q ss_pred             ccccccCCcCCcEEeccCCCCCcc---------cCC------ccCCCCCCEEEeeCCCCCc----ccCccccCCCCCcEE
Q 043408           62 THSSIQYLNKLIVLNLEHCRSLTS---------LST------SIHLESLKTLILSGCSNLM----KLPSSIERLSSLILL  122 (492)
Q Consensus        62 ~~~si~~L~~L~~L~L~~~~~l~~---------lp~------~~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L  122 (492)
                      +...+...++|++|++++|. +..         +..      ....+.|+.|.++++....    .+...+...+.|++|
T Consensus       113 l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L  191 (344)
T d2ca6a1         113 LIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  191 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             hhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccc
Confidence            23334445666666666654 110         000      0134566666666643221    223334555666666


Q ss_pred             EcccCCCCCc-----cccccCCCCCCCEEeccCCCCCC----CcccccCCcccccccccccccccc-----ccccccc--
Q 043408          123 NLRNCSRLEG-----LPSKICKLKSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIRE-----VPSSIVC--  186 (492)
Q Consensus       123 ~L~~~~~l~~-----lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~-----lp~~~~~--  186 (492)
                      +|++|.....     +...+...++|+.|++++|....    .+...+..+++|++|++++|.+..     +-..+..  
T Consensus       192 ~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~  271 (344)
T d2ca6a1         192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE  271 (344)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred             ccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhcc
Confidence            6666654321     22334455666666666654321    133344556666666666666542     2222222  


Q ss_pred             CCCCcccccCCCcC-------Ccccc-CCCCCCcEEecCCCcccc
Q 043408          187 LKNLGRLSFESFKE-------LPECL-GQLSSLRILFLDKNNFER  223 (492)
Q Consensus       187 l~~L~~L~l~~~~~-------lp~~l-~~l~~L~~L~L~~n~l~~  223 (492)
                      ...|++|++++|.-       +...+ .+++.|+.|+|++|.+..
T Consensus       272 ~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            24566666666541       22223 245566666666666653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.03  E-value=8.1e-13  Score=119.59  Aligned_cols=104  Identities=24%  Similarity=0.288  Sum_probs=44.6

Q ss_pred             CCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCcc-CCCCCCEEEeeCCCCCcccCccccCCCCCc
Q 043408           42 LSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTSI-HLESLKTLILSGCSNLMKLPSSIERLSSLI  120 (492)
Q Consensus        42 l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~  120 (492)
                      ++.+++|++|+|++|. +..++ .+..+++|+.|++++|. ++.++... .+++|++|++++| .+..+ +.+..+++|+
T Consensus        44 l~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N-~i~~l-~~~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASL-SGIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEE-ECCCH-HHHHHHHHSS
T ss_pred             HhcccccceeECcccC-CCCcc-cccCCccccChhhcccc-cccccccccccccccccccccc-ccccc-cccccccccc
Confidence            3334444444444432 22332 24444444444444443 33333322 2334455555443 22222 2244455555


Q ss_pred             EEEcccCCCCCccc--cccCCCCCCCEEeccCC
Q 043408          121 LLNLRNCSRLEGLP--SKICKLKSLERLNLSGC  151 (492)
Q Consensus       121 ~L~L~~~~~l~~lp--~~i~~l~~L~~L~Ls~c  151 (492)
                      +|++++|.... ++  ..+..+++|+.|++++|
T Consensus       119 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         119 VLYMSNNKITN-WGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EEEESEEECCC-HHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccchhcc-ccccccccCCCccceeecCCC
Confidence            55555543322 22  23455555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.95  E-value=8e-12  Score=112.88  Aligned_cols=124  Identities=19%  Similarity=0.235  Sum_probs=71.2

Q ss_pred             CCEEEeeCC-CCCcccCccccCCCCCcEEEcccCCCCCccccccCCCCCCCEEeccCCCCCCCcccccCCcccccccccc
Q 043408           95 LKTLILSGC-SNLMKLPSSIERLSSLILLNLRNCSRLEGLPSKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAE  173 (492)
Q Consensus        95 L~~L~L~~c-~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~  173 (492)
                      ++.+++.+. ..++.++.++..+++|++|+|++|... .++ .+..+++|+.|+|++| .+..+|.....+++|+.|+++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECS
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccc-ccccccccccccccccccccc
Confidence            444455442 234556667777777777777776533 443 3666777777777775 344555544555667777777


Q ss_pred             cccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccccc--hhhhcCcccccccccccc
Q 043408          174 GIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFERIP--ESIICLSHLYWLRISYCE  243 (492)
Q Consensus       174 ~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~  243 (492)
                      +|.++.++. +..+                     ++|+.|++++|.++.++  ..+..+++|+.|++++|+
T Consensus       102 ~N~i~~l~~-~~~l---------------------~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         102 YNQIASLSG-IEKL---------------------VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEECCCHHH-HHHH---------------------HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccc-cccc---------------------ccccccccccchhccccccccccCCCccceeecCCCc
Confidence            777766532 3334                     44555555555554443  234455555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.1e-10  Score=115.24  Aligned_cols=172  Identities=22%  Similarity=0.169  Sum_probs=112.2

Q ss_pred             CCCCCEEEeeCCCCCc-----ccCccccCCCCCcEEEcccCCCCCc----cccccCCCCCCCEEeccCCCCCCC----cc
Q 043408           92 LESLKTLILSGCSNLM-----KLPSSIERLSSLILLNLRNCSRLEG----LPSKICKLKSLERLNLSGCSNLQR----LP  158 (492)
Q Consensus        92 l~~L~~L~L~~c~~l~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~Ls~c~~l~~----lp  158 (492)
                      .+.++.+++.++....     ...........++.|++++|.....    ....+...+.++.+++++|.....    +.
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            3455666665543221     1223345578999999999876543    223455678899999998754321    11


Q ss_pred             ccc-CCcccccccccccccccc-----cccccccCCCCcccccCCCcC-------CccccC-CCCCCcEEecCCCccc--
Q 043408          159 NEL-GNLEALKELKAEGIAIRE-----VPSSIVCLKNLGRLSFESFKE-------LPECLG-QLSSLRILFLDKNNFE--  222 (492)
Q Consensus       159 ~~l-~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~-------lp~~l~-~l~~L~~L~L~~n~l~--  222 (492)
                      ..+ .....|+.++++++.+..     +...+...++|++|+++++.-       +...+. ..+.|+.|+|++|+++  
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence            111 234578899998887753     233445667899999998861       333443 4678999999999986  


Q ss_pred             ---ccchhhhcCccccccccccccccc---------cCCCCCcccceeeccccc
Q 043408          223 ---RIPESIICLSHLYWLRISYCERLK---------SLPELPCDLSDIEAHCCS  264 (492)
Q Consensus       223 ---~lp~~l~~l~~L~~L~L~~c~~l~---------~lp~l~~sL~~L~~~~C~  264 (492)
                         .+...+..+++|++|+|++|+ ++         .+......|+.|.+.++.
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             HHHHHHHHHhcCCCCCEEECCCCc-CCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence               356678888999999999985 32         222223468888887754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.4e-08  Score=85.93  Aligned_cols=104  Identities=21%  Similarity=0.118  Sum_probs=61.8

Q ss_pred             CCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccc-cccCCcCCcEEeccCCCCCcccCCc-c-CCCCCCEEEe
Q 043408           24 NLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHS-SIQYLNKLIVLNLEHCRSLTSLSTS-I-HLESLKTLIL  100 (492)
Q Consensus        24 ~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~-si~~L~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~L  100 (492)
                      ....++.+++.....+..+..+++|++|++.+++.+..++. .+..+++|+.|+|++|. ++.++.. + .+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccceec
Confidence            34456666554443333466666666676666555555543 45666777777776654 5555433 2 6677777777


Q ss_pred             eCCCCCcccCccccCCCCCcEEEcccCCC
Q 043408          101 SGCSNLMKLPSSIERLSSLILLNLRNCSR  129 (492)
Q Consensus       101 ~~c~~l~~lp~~i~~l~~L~~L~L~~~~~  129 (492)
                      ++| .+..+|..+....+|+.|+|++|..
T Consensus        88 s~N-~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SFN-ALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSS-CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cCC-CCcccChhhhccccccccccCCCcc
Confidence            764 3555665544445677777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2e-08  Score=86.37  Aligned_cols=105  Identities=18%  Similarity=0.122  Sum_probs=61.8

Q ss_pred             CEEEeeCCCCCcccCccccCCCCCcEEEcccCCCCCccc-cccCCCCCCCEEeccCCCCCCCcccccCCccccccccccc
Q 043408           96 KTLILSGCSNLMKLPSSIERLSSLILLNLRNCSRLEGLP-SKICKLKSLERLNLSGCSNLQRLPNELGNLEALKELKAEG  174 (492)
Q Consensus        96 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~  174 (492)
                      +.++.++ ....+.|..+..+++|++|++.+++.+..++ ..+.++++|+.|++++|....--+..+..+++|+.|+|++
T Consensus        11 ~~l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecC-CCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            3444444 2333445556666666666666555444443 3466667777777766533322244566777777777777


Q ss_pred             ccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCccc
Q 043408          175 IAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFE  222 (492)
Q Consensus       175 ~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~  222 (492)
                      |+++.+|..+                     ....+|+.|+|++|.+.
T Consensus        90 N~l~~l~~~~---------------------~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLSWKT---------------------VQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCCSTT---------------------TCSCCCCEEECCSSCCC
T ss_pred             CCCcccChhh---------------------hccccccccccCCCccc
Confidence            7777666432                     22235778888888775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.2e-05  Score=68.81  Aligned_cols=62  Identities=18%  Similarity=0.116  Sum_probs=40.5

Q ss_pred             ccCCCCcccccCCCc--C---CccccCCCCCCcEEecCCCcccccch-hhhcCccccccccccccccc
Q 043408          185 VCLKNLGRLSFESFK--E---LPECLGQLSSLRILFLDKNNFERIPE-SIICLSHLYWLRISYCERLK  246 (492)
Q Consensus       185 ~~l~~L~~L~l~~~~--~---lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~  246 (492)
                      ..+++|+.|++++|.  .   ++..+..+++|+.|+|++|.++.+++ ......+|+.|++++|+...
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            445555555555554  1   23345678888899999999887765 22344578889998887543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=9.9e-06  Score=69.36  Aligned_cols=74  Identities=27%  Similarity=0.260  Sum_probs=36.2

Q ss_pred             CCcEEEccCCCCCCCCCCCCCCCCccEEEeeCcccCccccccccCCcCCcEEeccCCCCCcccCCc---c-CCCCCCEEE
Q 043408           24 NLKHLNLSHSEHLTKIPDLSLATNLESLTFRGCTSLLETHSSIQYLNKLIVLNLEHCRSLTSLSTS---I-HLESLKTLI   99 (492)
Q Consensus        24 ~L~~L~Ls~~~~l~~~p~l~~~~nL~~L~L~~c~~l~~~~~si~~L~~L~~L~L~~~~~l~~lp~~---~-~l~~L~~L~   99 (492)
                      ..+.||+++...   .+++..+..+..++...+ ....++.....+++|++|+|++|. ++.++..   + .+++|+.|+
T Consensus        23 ~~~~Ldls~l~~---~~~l~~~~~~~~l~~~~~-~~~~l~~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRS---DPDLVAQNIDVVLNRRSS-MAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSS---CTTTTTTTCCCCTTSHHH-HHHHHHHHHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCC---Cchhhhccchhhcchhhh-HhhhhHHHHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccc
Confidence            456677776542   334444444433333221 112222223457777778887765 4444321   1 455555555


Q ss_pred             eeC
Q 043408          100 LSG  102 (492)
Q Consensus       100 L~~  102 (492)
                      +++
T Consensus        98 Ls~  100 (162)
T d1koha1          98 LSG  100 (162)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            555

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.06  E-value=0.00015  Score=62.05  Aligned_cols=112  Identities=19%  Similarity=0.172  Sum_probs=57.6

Q ss_pred             cCCCCCcEEEcccCCCCCc-----cccccCCCCCCCEEeccCCCCCC----CcccccCCccccccccccccccccccccc
Q 043408          114 ERLSSLILLNLRNCSRLEG-----LPSKICKLKSLERLNLSGCSNLQ----RLPNELGNLEALKELKAEGIAIREVPSSI  184 (492)
Q Consensus       114 ~~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~lp~~~  184 (492)
                      .+.++|++|+|++++.++.     +-..+...++|++|+|++|....    .+.+.+...+.|++|++++|.+..--  +
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g--~   89 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL--L   89 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH--H
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHH--H
Confidence            3456777888776543331     23345556667777777654321    12223333445555555555444210  0


Q ss_pred             ccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcccc--------cchhhhcCcccccccccc
Q 043408          185 VCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNFER--------IPESIICLSHLYWLRISY  241 (492)
Q Consensus       185 ~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l~~--------lp~~l~~l~~L~~L~L~~  241 (492)
                                    ..+-..+...++|++|+|++|.+..        +...+...++|+.|+++.
T Consensus        90 --------------~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          90 --------------ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             --------------HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             --------------HHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence                          0112234555677777777765432        334445556666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.72  E-value=0.00026  Score=60.42  Aligned_cols=118  Identities=16%  Similarity=0.091  Sum_probs=77.0

Q ss_pred             CCCCCCEEEeeCCCCCcc-----cCccccCCCCCcEEEcccCCCCC----ccccccCCCCCCCEEeccCCCCCCC----c
Q 043408           91 HLESLKTLILSGCSNLMK-----LPSSIERLSSLILLNLRNCSRLE----GLPSKICKLKSLERLNLSGCSNLQR----L  157 (492)
Q Consensus        91 ~l~~L~~L~L~~c~~l~~-----lp~~i~~l~~L~~L~L~~~~~l~----~lp~~i~~l~~L~~L~Ls~c~~l~~----l  157 (492)
                      +.++|++|+|+++..+..     +-..+...+.|++|+|++|....    .+...+...+.|+.|+|++|.....    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            568899999998655542     34457788999999999987653    2334455678999999999865422    3


Q ss_pred             ccccCCcccccccccccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcc
Q 043408          158 PNELGNLEALKELKAEGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNF  221 (492)
Q Consensus       158 p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l  221 (492)
                      -..+...++|++|+++++.+..+....             ...+...+...++|+.|+++.+..
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~-------------~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQV-------------EMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHH-------------HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHH-------------HHHHHHHHHhCCCccEeeCcCCCc
Confidence            345667778888888877654332100             001122334456777787766643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.38  E-value=0.00063  Score=57.72  Aligned_cols=113  Identities=19%  Similarity=0.174  Sum_probs=54.1

Q ss_pred             cCCCCCcEEEcccCCCCC-----ccccccCCCCCCCEEeccCCCCCCC----cccccCCccccccccccccccccccccc
Q 043408          114 ERLSSLILLNLRNCSRLE-----GLPSKICKLKSLERLNLSGCSNLQR----LPNELGNLEALKELKAEGIAIREVPSSI  184 (492)
Q Consensus       114 ~~l~~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~Ls~c~~l~~----lp~~l~~l~~L~~L~l~~~~i~~lp~~~  184 (492)
                      .+.++|++|+|.++..++     .+-..+...++|++|++++|.....    +-+.+...++++.++++++.+..-.  +
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g--~   91 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG--I   91 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH--H
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh--H
Confidence            455677777777644332     1233344556666666666532211    1112223334444444444332100  0


Q ss_pred             ccCCCCcccccCCCcCCccccCCCCCCcEEecC--CCccc-----ccchhhhcCccccccccccc
Q 043408          185 VCLKNLGRLSFESFKELPECLGQLSSLRILFLD--KNNFE-----RIPESIICLSHLYWLRISYC  242 (492)
Q Consensus       185 ~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~--~n~l~-----~lp~~l~~l~~L~~L~L~~c  242 (492)
                                    ..+...+...++|+.++|+  +|.+.     .+...+...++|+.|+++.+
T Consensus        92 --------------~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          92 --------------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             --------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             --------------HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence                          0122344556666665443  44453     34455666677777766553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.64  E-value=0.0016  Score=55.08  Aligned_cols=115  Identities=13%  Similarity=0.079  Sum_probs=71.6

Q ss_pred             CCCCCCEEEeeCCCCCc-----ccCccccCCCCCcEEEcccCCCCCc----cccccCCCCCCCEEeccCCCCCCC----c
Q 043408           91 HLESLKTLILSGCSNLM-----KLPSSIERLSSLILLNLRNCSRLEG----LPSKICKLKSLERLNLSGCSNLQR----L  157 (492)
Q Consensus        91 ~l~~L~~L~L~~c~~l~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~Ls~c~~l~~----l  157 (492)
                      +.++|++|+++++..+.     .+-..+...++|++|++++|.....    +...+...++++.+++++|.....    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            56899999999865554     2445567889999999999866442    334456678999999998755322    2


Q ss_pred             ccccCCccccccccc--ccccccccccccccCCCCcccccCCCcCCccccCCCCCCcEEecCCCcc
Q 043408          158 PNELGNLEALKELKA--EGIAIREVPSSIVCLKNLGRLSFESFKELPECLGQLSSLRILFLDKNNF  221 (492)
Q Consensus       158 p~~l~~l~~L~~L~l--~~~~i~~lp~~~~~l~~L~~L~l~~~~~lp~~l~~l~~L~~L~L~~n~l  221 (492)
                      -..+...++|+.+++  +++.+..--                ...+...+...+.|+.|+++.+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~----------------~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNV----------------EMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHH----------------HHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHH----------------HHHHHHHHHhCCCcCEEeCcCCCC
Confidence            344555566665443  333332100                001223344567777888776653