Citrus Sinensis ID: 043411

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQLANE
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHccHHHHHHHHcccccEEEEccccccccccccccccEEEEcccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHcHHHHHHHHHcccccEEEEEccccccccccccccEEEEEcHHHHHHHHcccccHHcccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mvvvnvpcmnggggetsyaknsNIQRTVMSKAWPFLEETIKDMfsssfpgcfnvadlgcssgpntLLVVSKIIDSIHKLYHQVNKKLPEFQVFlndlpgndfnsifESLPDFYErikkdkfgpcfiaGMLGSfyqrlfpsrginfihsSYSVHWlskvpenlennkrdiyitkssppsvCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLgrsiadpsskdcccLWELLTKSLIQLANE
Flexible Loop (DISEMBL)
mvvvnvpcmnggggetsyaknsniQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQLANE
Low Complexity Region (SEG)
MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQLANE
Disordered region (IsUnstruct)
**********************NIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQ****
Disordered Region (DISOPRED)
***VNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQ*NKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQLANE
Disordered Region (DISEMBL)
MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQLANE
Disordered Region (DISPRO)
*VVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQLANE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQLANE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q9FYZ9	364	Benzoate carboxyl methylt	N/A	no	0.962	0.640	0.524	1e-67
Q9SPV4	359	Salicylate O-methyltransf	N/A	no	0.979	0.660	0.487	7e-62
Q9SBK6	392	Jasmonate O-methyltransfe	N/A	no	0.995	0.614	0.473	2e-57
Q9AR07	389	Jasmonate O-methyltransfe	no	no	0.995	0.619	0.469	6e-55
Q9AVK1	385	Probable caffeine synthas	N/A	no	0.966	0.607	0.450	2e-54
Q9AVL9	385	Probable caffeine synthas	N/A	no	0.966	0.607	0.450	5e-54
Q9FZN8	369	Caffeine synthase 1 OS=Ca	N/A	no	0.962	0.631	0.439	7e-52
Q9AVK0	372	7-methylxanthosine syntha	N/A	no	0.975	0.634	0.426	2e-51
Q68CM3	365	Probable caffeine synthas	N/A	no	0.962	0.638	0.429	2e-51
A4GE69	372	7-methylxanthosine syntha	N/A	no	0.975	0.634	0.426	3e-51

>sp|Q9FYZ9|BAMT_ANTMA Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1

 Score =  256 bits (653), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/246 (52%), Positives = 173/246 (70%), Gaps = 13/246 (5%)

Query: 2   VVVNVPCMN-GGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSS--SFPGCFNVADLG 58
           V+  + CMN  G GETSYA NS +Q+ +MSK+   L+ET+KD+      FP CF + D+G
Sbjct: 3   VMKKLLCMNIAGDGETSYANNSGLQKVMMSKSLHVLDETLKDIIGDHVGFPKCFKMMDMG 62

Query: 59  CSSGPNTLLVVSKIIDSIHKLYHQVN-KKLPEFQVFLNDLPGNDFNSIFESLPDFYERIK 117
           CSSGPN LLV+S II++I  LY + N  +LPEF+VFLNDLP NDFN++F+ L        
Sbjct: 63  CSSGPNALLVMSGIINTIEDLYTEKNINELPEFEVFLNDLPDNDFNNLFKLL-------- 114

Query: 118 KDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLE-NNKRDIYITKSSP 176
             + G CF+ G+ GSFY RL P + ++F +SSYS+HWLS+VPE LE NN+++IY+   SP
Sbjct: 115 SHENGNCFVYGLPGSFYGRLLPKKSLHFAYSSYSIHWLSQVPEGLEDNNRQNIYMATESP 174

Query: 177 PSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSL 236
           P V +A+ +Q++RDFS FL LR EEIV GGRM LTF GRS+ DPSSKD   ++ LL K+L
Sbjct: 175 PEVYKAYAKQYERDFSTFLKLRGEEIVPGGRMVLTFNGRSVEDPSSKDDLAIFTLLAKTL 234

Query: 237 IQLANE 242
           + +  E
Sbjct: 235 VDMVAE 240

Converts benzoic acid into the volatile ester methyl benzoates. This scent, mostly produced in a rhythmical, diurnal manner, attracts the pollinators.
Antirrhinum majus (taxid: 4151)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9SPV4|SAMT_CLABR Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1

 Score =  237 bits (604), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 119/244 (48%), Positives = 162/244 (66%), Gaps = 7/244 (2%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSS-SFPGCFNVADLGC 59
           M V  V  M GG GE SYA NS IQR V+S   P  E  I  ++S  +      +ADLGC
Sbjct: 1   MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60

Query: 60  SSGPNTLLVVSKIIDSIHKLYHQVNKK-LPEFQVFLNDLPGNDFNSIFESLPDFYERIKK 118
           SSGPN L  V+++I ++ +L  ++ ++  PE+Q+FLNDLPGNDFN+IF SLP     I+ 
Sbjct: 61  SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP-----IEN 115

Query: 119 DKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPS 178
           D  G CFI G+ GSFY RLFP   ++FIHSSYS+ WLS+VP  +E+NK +IY+  + P S
Sbjct: 116 DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQS 175

Query: 179 VCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQ 238
           V  A+++QFQ D + FL  R++E+V GGRM LT LGR   D +S +CC +W+LL  +L Q
Sbjct: 176 VLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQ 235

Query: 239 LANE 242
           + +E
Sbjct: 236 MVSE 239

Catalyzes the methylation of the free carboxyl end of the plant hormone salicylic acid (SA). Converts SA to SA methyl ester (MSA). The volatile compound MSA is hypothesized to act as an airborne signal that triggers defense responses in uninfected plants. MSA is an important chemoattractant for moth pollinated flowering plants.

Clarkia breweri (taxid: 36903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 9

>sp|Q9SBK6|JMT_BRARP Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1

 Score =  222 bits (565), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/268 (47%), Positives = 173/268 (64%), Gaps = 27/268 (10%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKD-MFSSSFPGCFNVADLGC 59
           M V+ +  MN G GETSYAKNS +Q  ++S     ++E +K  M  +S    F +ADLGC
Sbjct: 1   MEVMRILHMNKGNGETSYAKNSIVQSNIISLGRRVMDEALKKLMIRNSEILSFGIADLGC 60

Query: 60  SSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKK- 118
           SSGPN+LL +S I+++I  L H +++ +PE  + LNDLP NDFN IF SLP+FY+R+KK 
Sbjct: 61  SSGPNSLLSISNIVETIQNLCHDLDRPVPELSLSLNDLPSNDFNYIFASLPEFYDRVKKR 120

Query: 119 -----------DKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKR 167
                         GPCF++ + GSFY RLFP R ++F+HSS S+HWLS+VP   E NK+
Sbjct: 121 DNNYESLGFEHGSGGPCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCG-EVNKK 179

Query: 168 D-------------IYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLG 214
           D             IY++K+SP S  + +  QFQ DFS FL  RSEE+V GGRM L+FLG
Sbjct: 180 DGVVITADLDNRGKIYLSKTSPKSAHKVYALQFQTDFSVFLRSRSEELVPGGRMVLSFLG 239

Query: 215 RSIADPSSKDCCCLWELLTKSLIQLANE 242
           RS  DP++++ C  WELL ++L+ LA E
Sbjct: 240 RSSPDPTTEESCYQWELLAQALMSLAKE 267

Catalyzes the methylation of jasmonate into methyljasmonate, a plant volatile that acts as an important cellular regulator mediating diverse developmental processes and defense responses.

Brassica rapa subsp. pekinensis (taxid: 51351)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 1

>sp|Q9AR07|JMT_ARATH Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=3

 Score =  214 bits (544), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 124/264 (46%), Positives = 169/264 (64%), Gaps = 23/264 (8%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKD-MFSSSFPGCFNVADLGC 59
           M V+ V  MN G GETSYAKNS  Q  ++S     ++E +K  M S+S      +ADLGC
Sbjct: 1   MEVMRVLHMNKGNGETSYAKNSTAQSNIISLGRRVMDEALKKLMMSNSEISSIGIADLGC 60

Query: 60  SSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKD 119
           SSGPN+LL +S I+D+IH L   +++ +PE +V LNDLP NDFN I  SLP+FY+R+  +
Sbjct: 61  SSGPNSLLSISNIVDTIHNLCPDLDRPVPELRVSLNDLPSNDFNYICASLPEFYDRVNNN 120

Query: 120 K---------FGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVP----------- 159
           K            CF++ + GSFY RLFP R ++F+HSS S+HWLS+VP           
Sbjct: 121 KEGLGFGRGGGESCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCREAEKEDRTI 180

Query: 160 -ENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIA 218
             +LEN  + IYI+K+SP S  +A+  QFQ DF  FL  RSEE+V GGRM L+FLGR   
Sbjct: 181 TADLENMGK-IYISKTSPKSAHKAYALQFQTDFWVFLRSRSEELVPGGRMVLSFLGRRSL 239

Query: 219 DPSSKDCCCLWELLTKSLIQLANE 242
           DP++++ C  WELL ++L+ +A E
Sbjct: 240 DPTTEESCYQWELLAQALMSMAKE 263

Catalyzes the methylation of jasmonate into methyljasmonate, a plant volatile that acts as an important cellular regulator mediating diverse developmental processes and defense responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 1

>sp|Q9AVK1|CS3_COFAR Probable caffeine synthase 3 OS=Coffea arabica GN=CS3 PE=2 SV=1

 Score =  212 bits (539), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 114/253 (45%), Positives = 159/253 (62%), Gaps = 19/253 (7%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPG---CFNVADL 57
           M +  V  MNGG G+ SYAKNS+  + V++K  P LE+ + ++  ++ P    C  VADL
Sbjct: 1   MELQEVLHMNGGEGDASYAKNSSFNQLVLAKVKPVLEQCVGELLRANLPNINKCIKVADL 60

Query: 58  GCSSGPNTLLVVSKIIDSIHKLYHQVNKKL--PEFQVFLNDLPGNDFNSIFESLPDFYER 115
           GC+SGPNTLL V  I+ SI K+  ++  +L  P  QVFL DL  NDFNS+F  LP FY +
Sbjct: 61  GCASGPNTLLTVRDIVQSIDKVRQEMKNELERPTIQVFLTDLFQNDFNSVFMLLPSFYRK 120

Query: 116 IKKD---KFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENL------ENNK 166
           ++K+   K G C IA M GSF+ RLFP   ++F+HSSYS+ +LS+VP  L        NK
Sbjct: 121 LEKENGRKIGSCLIAAMPGSFHGRLFPEESMHFLHSSYSLQFLSQVPSGLVTELGITANK 180

Query: 167 RDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFL--GRSIADPSSKD 224
           R IY +K+SPP V +A+ +QF +DF+ FL +RSEE++S GRM LT +  G     P++ D
Sbjct: 181 RSIYSSKASPPPVQKAYLDQFTKDFTTFLRIRSEELLSRGRMLLTCICKGDEFDGPNTMD 240

Query: 225 CCCLWELLTKSLI 237
              L E+    L+
Sbjct: 241 ---LLEMAINDLV 250

May be involved in the biosynthesis of caffeine.

Coffea arabica (taxid: 13443)

>sp|Q9AVL9|CS4_COFAR Probable caffeine synthase 4 OS=Coffea arabica GN=CS4 PE=2 SV=1

 Score =  211 bits (536), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 114/253 (45%), Positives = 159/253 (62%), Gaps = 19/253 (7%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPG---CFNVADL 57
           M +  V  MNGG GE SYAKNS+  + V++K  P LE+ ++++  ++ P    C  VADL
Sbjct: 1   MELQEVLHMNGGEGEASYAKNSSFNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60

Query: 58  GCSSGPNTLLVVSKIIDSIHKLYHQVNKKL--PEFQVFLNDLPGNDFNSIFESLPDFYER 115
           GC+SGPNTLL V   + SI K+  ++  +L  P  QVFL DL  NDFNS+F  LP FY +
Sbjct: 61  GCASGPNTLLTVWDTVQSIDKVKQEMKNELERPTIQVFLTDLFQNDFNSVFMLLPSFYRK 120

Query: 116 IKKD---KFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENL------ENNK 166
           ++K+   K G C IA M GSF+ RLFP   ++F+HSSYS+ +LS+VP  L        NK
Sbjct: 121 LEKENGRKIGSCLIAAMPGSFHGRLFPEESMHFLHSSYSLQFLSQVPSGLVTELGITANK 180

Query: 167 RDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFL--GRSIADPSSKD 224
           R IY +K+SPP V +A+ +QF +DF+ FL +RSEE++S GRM LT +  G     P++ D
Sbjct: 181 RSIYSSKASPPPVQKAYLDQFTKDFTTFLRMRSEELLSRGRMLLTCICKGDECDGPNTMD 240

Query: 225 CCCLWELLTKSLI 237
              L E+    L+
Sbjct: 241 ---LLEMAINDLV 250

May be involved in the biosynthesis of caffeine.

Coffea arabica (taxid: 13443)

>sp|Q9FZN8|TCS1_CAMSI Caffeine synthase 1 OS=Camellia sinensis GN=TCS1 PE=1 SV=1

 Score =  204 bits (518), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 106/241 (43%), Positives = 149/241 (61%), Gaps = 8/241 (3%)

Query: 9   MNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFP-GCFNVADLGCSSGPNTLL 67
           MN G GE+SYA+NS+  + V S A P LE  ++ +FS  F     N ADLGC++GPNT  
Sbjct: 15  MNRGEGESSYAQNSSFTQQVASMAQPALENAVETLFSRDFHLQALNAADLGCAAGPNTFA 74

Query: 68  VVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIA 127
           V+S I   + K   ++N +  E QV+LNDL GNDFN++F+ L       K ++  PC++ 
Sbjct: 75  VISTIKRMMEKKCRELNCQTLELQVYLNDLFGNDFNTLFKGLSSEVIGNKCEEV-PCYVM 133

Query: 128 GMLGSFYQRLFPSRGINFIHSSYSVHWLSKVP------ENLENNKRDIYITKSSPPSVCQ 181
           G+ GSF+ RLFP   ++ +HSSYSVHWL++ P      E L  NK  IYI+K+SPP V +
Sbjct: 134 GVPGSFHGRLFPRNSLHLVHSSYSVHWLTQAPKGLTSREGLALNKGKIYISKTSPPVVRE 193

Query: 182 AFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQLAN 241
           A+  QF  DF+ FL+ RS+E+V  G M L   GR  +DPS    C  WELL  ++ +L +
Sbjct: 194 AYLSQFHEDFTMFLNARSQEVVPNGCMVLILRGRQCSDPSDMQSCFTWELLAMAIAELVS 253

Query: 242 E 242
           +
Sbjct: 254 Q 254

Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 3-N- and 1-N-methylation activity.

Camellia sinensis (taxid: 4442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|Q9AVK0|XMT1_COFAR 7-methylxanthosine synthase 1 OS=Coffea arabica GN=XMT1 PE=1 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/251 (42%), Positives = 154/251 (61%), Gaps = 15/251 (5%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPG---CFNVADL 57
           M +  V  MNGG G+TSYAKNS   + V++K  P LE+ ++++  ++ P    C  VADL
Sbjct: 1   MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60

Query: 58  GCSSGPNTLLVVSKIIDSIHKLYHQVNKKL--PEFQVFLNDLPGNDFNSIFESLPDFYER 115
           GC+SGPNTLL V  I+ SI K+  +   +L  P  Q+FLNDL  NDFNS+F+ LP FY +
Sbjct: 61  GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRK 120

Query: 116 IKKD---KFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENL------ENNK 166
           ++K+   K G C I  M GSFY RLFP   ++F+HS Y + WLS+VP  L        NK
Sbjct: 121 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGISTNK 180

Query: 167 RDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCC 226
             IY +K+S   V +A+ +QF +DF+ FL + SEE+ S GRM LT + + + +  +++  
Sbjct: 181 GSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGV-ELDARNAI 239

Query: 227 CLWELLTKSLI 237
            L E+    L+
Sbjct: 240 DLLEMAINDLV 250

Involved in the biosynthesis of caffeine. Specific for xanthosine and could not use xanthosine 5'-monophosphate (XMP) as substrate. Catalyzes the 7-N-methylation activity of xanthosine, but does not have 1-N- or 3-N-methylation activity.

Coffea arabica (taxid: 13443)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 8

>sp|Q68CM3|TCS2_CAMSI Probable caffeine synthase 2 OS=Camellia sinensis GN=TCS2 PE=2 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/242 (42%), Positives = 147/242 (60%), Gaps = 9/242 (3%)

Query: 9   MNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFP--GCFNVADLGCSSGPNTL 66
           MN G GE+SYA+NS+  +TV S   P LE  ++ +FS  F      N  DLGC++GP T 
Sbjct: 10  MNKGEGESSYAQNSSFTQTVTSMTMPVLENAVETLFSKDFHLLQALNAVDLGCAAGPTTF 69

Query: 67  LVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFI 126
            V+S I   + K   ++N +  E QV+LNDLPGNDFN++F+ LP      K ++   C++
Sbjct: 70  TVISTIKRMMEKKCRELNCQTLELQVYLNDLPGNDFNTLFKGLPSKVVGNKCEEVS-CYV 128

Query: 127 AGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVP------ENLENNKRDIYITKSSPPSVC 180
            G+ GSF+ RLFP   ++ +HS YSVHWL++ P      E L  NK  IYI+K+SPP V 
Sbjct: 129 VGVPGSFHGRLFPRNSLHLVHSCYSVHWLTQAPKGLTSKEGLALNKGKIYISKTSPPVVR 188

Query: 181 QAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQLA 240
           +A+  QF  DF+ FL+ RS+E+V  G M L   GR  +DPS    C  WELL  ++ +L 
Sbjct: 189 EAYLSQFHEDFTMFLNSRSQEVVPNGCMVLILRGRLSSDPSDMGSCFTWELLAVAIAELV 248

Query: 241 NE 242
           ++
Sbjct: 249 SQ 250

May be involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 1-N-methylation activity.

Camellia sinensis (taxid: 4442)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 0

>sp|A4GE69|XMT1_COFCA 7-methylxanthosine synthase 1 OS=Coffea canephora GN=XMT1 PE=1 SV=1

 Score =  201 bits (511), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 107/251 (42%), Positives = 154/251 (61%), Gaps = 15/251 (5%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPG---CFNVADL 57
           M +  V  MNGG G+TSYAKNS   + V++K  P LE+ ++++  ++ P    C  VADL
Sbjct: 1   MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60

Query: 58  GCSSGPNTLLVVSKIIDSIHKLYHQVNKKL--PEFQVFLNDLPGNDFNSIFESLPDFYER 115
           GC+SGPNTLL V  I+ SI K+  +   +L  P  Q+FLNDL  NDFNS+F+ LP FY +
Sbjct: 61  GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRK 120

Query: 116 IKKD---KFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENL------ENNK 166
           ++K+   K G C I  M GSFY RLFP   ++F+HS Y + WLS+VP  L        NK
Sbjct: 121 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGTNK 180

Query: 167 RDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCC 226
             IY +K+S   V +A+ +QF +DF+ FL + SEE+ S GRM LT + + + +  +++  
Sbjct: 181 GSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGV-ELDARNAI 239

Query: 227 CLWELLTKSLI 237
            L E+    L+
Sbjct: 240 DLLEMAINDLV 250

Involved in the biosynthesis of caffeine. Specific for xanthosine. Cannot use xanthosine 5'-monophosphate (XMP) as substrate. Directly produces 7-methylxanthine, and therefore the methyl transfer and nucleoside cleavage may be coupled. Catalyzes the 7-N-methylation of xanthosine, but does not have 1-N- or 3-N-methylation activity.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
224144626	367	predicted protein [Populus trichocarpa]	0.991	0.653	0.663	3e-89
402768957	365	salicylic acid carboxyl methltransferase	0.995	0.660	0.611	1e-76
359476675	358	PREDICTED: benzoate carboxyl methyltrans	1.0	0.675	0.575	1e-76
225430686	359	PREDICTED: benzoate carboxyl methyltrans	0.987	0.665	0.576	1e-76
209956793	380	S-adenosyl-L-methionine:salicylic acid c	1.0	0.636	0.556	8e-75
440550959	367	salicylic acid carboxyl methyltransferas	1.0	0.659	0.540	4e-73
224097038	364	predicted protein [Populus trichocarpa]	1.0	0.664	0.542	4e-73
224144628	375	predicted protein [Populus trichocarpa]	0.991	0.64	0.587	8e-73
225430676	364	PREDICTED: salicylate O-methyltransferas	0.995	0.662	0.536	2e-72
359476672	363	PREDICTED: salicylate O-methyltransferas	0.995	0.663	0.530	1e-71

>gi|224144626|ref|XP_002325354.1| predicted protein [Populus trichocarpa] gi|222862229|gb|EEE99735.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 162/244 (66%), Positives = 199/244 (81%), Gaps = 4/244 (1%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCS 60
           MVV +V CMN G GETSYAKNS +Q+TV+SKA P LE+TIKDMFS++ P  F +ADLGCS
Sbjct: 1   MVVESVLCMNPGDGETSYAKNSFLQKTVLSKARPILEDTIKDMFSTALPTSFKLADLGCS 60

Query: 61  SGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERI---K 117
           SGPNTLL VS+I+D I++L  Q+N KLPEFQVFLNDLPGNDFN++F+SLP FYE+    K
Sbjct: 61  SGPNTLLFVSEIMDVIYELCQQLNCKLPEFQVFLNDLPGNDFNTVFKSLPFFYEKFGEEK 120

Query: 118 KDKFGP-CFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSP 176
            D +G  C+I+G+ GSFY RLFPS+ ++F HSSYS+HWLSKVPE + +NK +IY+ K+SP
Sbjct: 121 GDLYGQRCYISGVPGSFYHRLFPSKSLHFFHSSYSLHWLSKVPEGISDNKGNIYMAKASP 180

Query: 177 PSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSL 236
           P+V +A+ EQFQ+DFS FL LRSEEI+ GGR+ LTFLGRSI DP SKDCC  WELL KSL
Sbjct: 181 PNVFKAYLEQFQKDFSLFLRLRSEEIIQGGRVVLTFLGRSIDDPRSKDCCLFWELLAKSL 240

Query: 237 IQLA 240
           + LA
Sbjct: 241 LDLA 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402768957|gb|AFQ98271.1| salicylic acid carboxyl methltransferase [Camellia sinensis]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/247 (61%), Positives = 187/247 (75%), Gaps = 6/247 (2%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSS-SFPGCFNVADLGC 59
           MVV NV  MN G GETSYA NS +Q+T +  + P LE+T+K + ++ +FP    +ADLGC
Sbjct: 1   MVVQNVLHMNAGNGETSYANNSTLQKTAILMSMPVLEDTLKKVCNNDAFPKHLKIADLGC 60

Query: 60  SSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKD 119
           SSGPNT LV+S+II+ IH L  Q N K PE ++ LNDLP NDFNSIF+SLP FYE+IK +
Sbjct: 61  SSGPNTFLVISQIINIIHNLMQQNNCKAPEIEICLNDLPQNDFNSIFKSLPTFYEKIKME 120

Query: 120 KF----GPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSS 175
           K     G CF++G+ GSFY RLFP + ++F+HSSYSVHWLS+VPE LEN K +IYI ++S
Sbjct: 121 KEEKLPGACFVSGVPGSFYCRLFPRKSLHFVHSSYSVHWLSQVPERLEN-KGNIYIARTS 179

Query: 176 PPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKS 235
           PP+V +A+ +QFQ DFS FLSLR EEIV GG M LTFLGR IADP+ KDCC LWELLTKS
Sbjct: 180 PPTVFEAYLKQFQMDFSTFLSLRYEEIVVGGPMILTFLGRRIADPTDKDCCILWELLTKS 239

Query: 236 LIQLANE 242
           L+ L  E
Sbjct: 240 LLDLVTE 246

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476675|ref|XP_002265700.2| PREDICTED: benzoate carboxyl methyltransferase-like [Vitis vinifera] gi|297735115|emb|CBI17477.3| unnamed protein product [Vitis vinifera]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 141/245 (57%), Positives = 175/245 (71%), Gaps = 3/245 (1%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCS 60
           MV + +  MNGG G++SYA NS +Q+ ++ +  PFLE +IKD FSS  P C  +ADLGCS
Sbjct: 1   MVFLKILPMNGGNGKSSYANNSLLQKKMILEVRPFLEVSIKDAFSSGIPSCVKLADLGCS 60

Query: 61  SGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKK-- 118
           SGPN L  +S+II +IH +  ++N K PEFQVFLNDLPGNDFN+IF  LPDF E++ K  
Sbjct: 61  SGPNALSAISEIIHTIHGMSKRMNCKSPEFQVFLNDLPGNDFNNIFSLLPDFNEKLTKEE 120

Query: 119 -DKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPP 177
            D  G CFI G+ GSFY R+FPSR ++F+HSS SVHWLS+ P  LE NK  IYI   SPP
Sbjct: 121 DDTLGHCFITGVPGSFYSRIFPSRSLDFVHSSCSVHWLSQAPAGLEKNKGHIYIANGSPP 180

Query: 178 SVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLI 237
           +V QA+  QFQRDFS FL LRSEEI   GRM +T +GRS+ DPS  +CC LWELL +SL 
Sbjct: 181 TVIQAYTNQFQRDFSLFLGLRSEEIKLAGRMVITIIGRSMEDPSGGECCDLWELLAESLT 240

Query: 238 QLANE 242
            +  E
Sbjct: 241 DMLAE 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430686|ref|XP_002265637.1| PREDICTED: benzoate carboxyl methyltransferase [Vitis vinifera] gi|147844218|emb|CAN80044.1| hypothetical protein VITISV_025095 [Vitis vinifera] gi|297735113|emb|CBI17475.3| unnamed protein product [Vitis vinifera]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 140/243 (57%), Positives = 178/243 (73%), Gaps = 4/243 (1%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMF-SSSFPGCFNVADLGC 59
           MV +N   +N G GE SYA NS  Q+ ++ KA  FLEE I+D F S+ FP C  +A+LGC
Sbjct: 1   MVAINFLHVNAGNGEISYANNSLAQKKIILKARAFLEEAIRDRFVSAGFPSCVKLAELGC 60

Query: 60  SSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKD 119
           SSG N LL +S+IID+IH++  ++N + PEFQVFLNDLP  DFN+IF+SLP FYE + K+
Sbjct: 61  SSGTNALLAISEIIDTIHEMSQRINCESPEFQVFLNDLPETDFNNIFKSLPAFYEGLMKE 120

Query: 120 K---FGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSP 176
           K    G CF+ GM GSFY R+FP+R ++F+HSS SVHWLS+VP  L+NNK  IY+  +  
Sbjct: 121 KGGKLGNCFVTGMPGSFYGRIFPTRSLDFVHSSASVHWLSQVPAGLKNNKGHIYMANTCR 180

Query: 177 PSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSL 236
           P V +A+ +QFQRDF+ FL LRSEEI  GGRM +T  GRSI DPSSKDCC LWELL KSL
Sbjct: 181 PDVLKAYTKQFQRDFTMFLGLRSEEIKPGGRMVITITGRSIEDPSSKDCCDLWELLAKSL 240

Query: 237 IQL 239
           + +
Sbjct: 241 LDM 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209956793|gb|ABU88887.2| S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase [Chimonanthus praecox]

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 143/257 (55%), Positives = 185/257 (71%), Gaps = 15/257 (5%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSS------FPGCFNV 54
           M V++V  MNGG  E+SYA NS IQR  +SKA P  EE I ++FSSS      F     +
Sbjct: 1   MEVLSVLHMNGGIEESSYANNSAIQRKAISKAEPIAEEAIHELFSSSNSYNNKFRESLGI 60

Query: 55  ADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYE 114
           ADLGCSSGPNTLL++SKIID I+     +  K PE Q+FLNDLPGNDFN+IF SLPD+Y+
Sbjct: 61  ADLGCSSGPNTLLMISKIIDIINGECRHLGLKSPELQIFLNDLPGNDFNTIFTSLPDYYQ 120

Query: 115 RIKK---DKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN------N 165
           R+++   D FGP FI G+ GSFY RLFPSR ++F+HSSYS+ WLS+VP  L+       N
Sbjct: 121 RVREKKGDDFGPYFIVGVPGSFYGRLFPSRSLHFVHSSYSLMWLSQVPPALDGKRGSALN 180

Query: 166 KRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDC 225
           K +IY+ K+SPP V +A+ +QFQ+DF  FLS RSEE+V+GGRM LTFLGR  +DP+SK+C
Sbjct: 181 KGNIYMAKTSPPVVLKAYLDQFQKDFFTFLSCRSEEMVAGGRMVLTFLGRKSSDPTSKEC 240

Query: 226 CCLWELLTKSLIQLANE 242
           C +WELL  +L  + ++
Sbjct: 241 CFIWELLANALNDMVSQ 257

Source: Chimonanthus praecox

Species: Chimonanthus praecox

Genus: Chimonanthus

Family: Calycanthaceae

Order: Laurales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|440550959|gb|AGC11863.1| salicylic acid carboxyl methyltransferase [Camellia japonica]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 133/246 (54%), Positives = 179/246 (72%), Gaps = 4/246 (1%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCS 60
           M V+ V  MNGG GETSYA NS +Q+ V+S   P  +E I D++ S+ P    +ADLGCS
Sbjct: 1   MEVIQVLHMNGGIGETSYASNSLVQKKVISLTKPITKEAIVDLYCSTNPMTLCIADLGCS 60

Query: 61  SGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDK 120
           SGPNT LVVS++++++H    ++  + PEFQV+LNDLPGNDFN+IF+ LP F+E+++   
Sbjct: 61  SGPNTFLVVSELMETVHNTCQKLGHQTPEFQVYLNDLPGNDFNTIFKCLPSFHEKMRNQM 120

Query: 121 ---FGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLE-NNKRDIYITKSSP 176
               GPCF+ G+ GSFY RLFP++ ++F+HSSYS+ WLS+VP+ LE NNK +IY+  SS 
Sbjct: 121 GLGLGPCFVTGVPGSFYARLFPTKSLHFVHSSYSLMWLSQVPDGLESNNKGNIYMASSSS 180

Query: 177 PSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSL 236
             V +A++ QFQ DFS FL  RSEE+VSGGRM LT LGR   DPSSK+CC +WELL  +L
Sbjct: 181 KEVLKAYYHQFQIDFSEFLKCRSEELVSGGRMVLTILGRESDDPSSKECCYIWELLAMAL 240

Query: 237 IQLANE 242
            Q+ +E
Sbjct: 241 NQMVSE 246

Source: Camellia japonica

Species: Camellia japonica

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097038|ref|XP_002310820.1| predicted protein [Populus trichocarpa] gi|118486393|gb|ABK95036.1| unknown [Populus trichocarpa] gi|222853723|gb|EEE91270.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 133/245 (54%), Positives = 177/245 (72%), Gaps = 3/245 (1%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCS 60
           M V  V  MNGG GETSYA+NS +QR V+S      EE I +++ ++FP    +ADLGCS
Sbjct: 1   MEVAQVLHMNGGRGETSYAQNSLVQRKVISITMRIAEEAITNIYCNTFPTSLAIADLGCS 60

Query: 61  SGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKK-- 118
           SGPNTL  VS+++  + ++  ++  + PE+QV LNDLPGNDFN+IF+SL  F E +KK  
Sbjct: 61  SGPNTLYAVSELVKVVDEVRRKLGHQSPEYQVLLNDLPGNDFNAIFKSLAGFQENLKKQM 120

Query: 119 -DKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPP 177
            D FGPCF AG+ GSFY RLF ++ ++F+HSSYS+ WLS+VPE LE NK +IY+  +SPP
Sbjct: 121 GDGFGPCFFAGVPGSFYCRLFRAKSLHFVHSSYSLMWLSRVPEGLEGNKGNIYMASTSPP 180

Query: 178 SVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLI 237
           SV +A++ QFQ DF+ FL  RSEE+V+GGRM LT LGR   DPSSK+CC +WELL  +L 
Sbjct: 181 SVLKAYYMQFQTDFTLFLKCRSEELVAGGRMVLTILGRRSEDPSSKECCYIWELLAVALN 240

Query: 238 QLANE 242
           ++  E
Sbjct: 241 EMVLE 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144628|ref|XP_002325355.1| predicted protein [Populus trichocarpa] gi|222862230|gb|EEE99736.1| predicted protein [Populus trichocarpa]

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 148/252 (58%), Positives = 187/252 (74%), Gaps = 12/252 (4%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKA-----WPFLEETIKDMFSSSFPGCFNVA 55
           M+V +V  MN G GETSYAKNS +Q ++          P LE+TIKDMFS++ P CF +A
Sbjct: 1   MMVESVLRMNPGDGETSYAKNSFLQLSLSLLTPYFIKMPILEDTIKDMFSTALPTCFKLA 60

Query: 56  DLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYER 115
           DLGCSSGPNTLL+VS+I+D I++L  Q+N KLPEFQVFLNDLPGNDFN++F+SLP FY++
Sbjct: 61  DLGCSSGPNTLLLVSEIMDVIYELCQQLNCKLPEFQVFLNDLPGNDFNAVFKSLPFFYDK 120

Query: 116 IKKDK---FGP-CFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVP-ENLENNKRDIY 170
             K+K   +G  CFI+G+ GSFY RLFPS+ ++F HSSYS+HWLSKV  + +    R IY
Sbjct: 121 FGKEKGDLYGQHCFISGVPGSFYHRLFPSKSLHFFHSSYSLHWLSKVMCQKVYQITRGIY 180

Query: 171 ITKSS--PPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCL 228
             +     P+V +A+ EQFQ+DFS  L LRSEEI+ GGR+ LTF+GRSI DP SKDCC  
Sbjct: 181 TWRRQVLDPNVFKAYLEQFQKDFSLSLRLRSEEIIQGGRVVLTFIGRSIEDPRSKDCCLY 240

Query: 229 WELLTKSLIQLA 240
           WELL KSL+ LA
Sbjct: 241 WELLAKSLLDLA 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430676|ref|XP_002262676.1| PREDICTED: salicylate O-methyltransferase [Vitis vinifera]

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 132/246 (53%), Positives = 179/246 (72%), Gaps = 5/246 (2%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCS 60
           M VV V CM GG G+TSYAKNS +Q+ V+S   P +EE I +++ + FP    +ADLGCS
Sbjct: 1   MEVVQVLCMKGGNGDTSYAKNSLVQKKVISLTKPIIEEAITNLYCNKFPTSLCIADLGCS 60

Query: 61  SGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDK 120
           SGPNTL  V +++ ++ ++  ++ ++LPE QVFLNDLPGNDFN+IF+SLP F + ++K +
Sbjct: 61  SGPNTLFAVLEVVTTVDRVGKKMGRQLPEIQVFLNDLPGNDFNTIFKSLPRFQKDLEK-R 119

Query: 121 FGP----CFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSP 176
            G     CFI G+ GSFY RLFPS+ ++FIHSSYS+ WLS+VP+ LE+NK +IY+  SSP
Sbjct: 120 MGAGAESCFINGVPGSFYGRLFPSKSLHFIHSSYSLQWLSQVPQGLESNKGNIYMASSSP 179

Query: 177 PSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSL 236
           P V + ++EQF+ DFS FL  RSEE++ GG M LTFLGR   DPSSK+CC +WELL  +L
Sbjct: 180 PCVLKVYYEQFRTDFSMFLRCRSEELLEGGSMVLTFLGRRSEDPSSKECCYIWELLAVAL 239

Query: 237 IQLANE 242
             +  E
Sbjct: 240 NDMVAE 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476672|ref|XP_002263123.2| PREDICTED: salicylate O-methyltransferase-like [Vitis vinifera]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/245 (53%), Positives = 177/245 (72%), Gaps = 4/245 (1%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCS 60
           M V  V CM GG G+TSYAKNS +Q+ V+S   P +E+ I +++ ++FP    +ADLGCS
Sbjct: 1   MEVAQVLCMKGGNGDTSYAKNSLVQKKVISLTKPIIEDAITNLYCNNFPASLCIADLGCS 60

Query: 61  SGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDK 120
           SGPNT   V +++ ++ K+  ++ ++LPE QVFLNDLPGNDFN+IF+SLP F + ++K  
Sbjct: 61  SGPNTFFAVLEVVTTVDKVGKKMGRQLPEIQVFLNDLPGNDFNTIFKSLPKFQKDLQKTM 120

Query: 121 FG---PCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPP 177
                 CF+ G+ GSFY RLFPS+ ++F+HSSYS+ WLS+VP  LE NK +IY+  SSPP
Sbjct: 121 GAGAESCFVTGVPGSFYGRLFPSKSLHFVHSSYSLQWLSQVPRGLE-NKGNIYMASSSPP 179

Query: 178 SVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLI 237
           SV +A++EQFQ DFS FL  RSEE++ GG M LTFLGR   DPSSK+CC +WELL  +L 
Sbjct: 180 SVLKAYYEQFQSDFSMFLRCRSEELLGGGTMVLTFLGRRSEDPSSKECCYIWELLAVALN 239

Query: 238 QLANE 242
            + +E
Sbjct: 240 DMVSE 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
TAIR|locus:2144466	368	AT5G38020 [Arabidopsis thalian	0.987	0.649	0.512	2e-63
TAIR|locus:2095572	368	AT3G21950 [Arabidopsis thalian	0.987	0.649	0.475	2.3e-62
TAIR|locus:2154845	354	AT5G66430 [Arabidopsis thalian	0.958	0.655	0.504	3.4e-61
TAIR|locus:2179929	415	NAMT1 [Arabidopsis thaliana (t	0.966	0.563	0.527	3.1e-60
TAIR|locus:2080747	379	BSMT1 [Arabidopsis thaliana (t	0.987	0.630	0.502	5.7e-59
TAIR|locus:2053458	359	AT2G14060 [Arabidopsis thalian	0.966	0.651	0.463	6.6e-58
TAIR|locus:2179969	385	AT5G04380 "AT5G04380" [Arabido	0.979	0.615	0.473	1.1e-55
TAIR|locus:2115400	371	AT4G36470 [Arabidopsis thalian	0.954	0.622	0.452	2e-49
TAIR|locus:2013149	389	JMT "jasmonic acid carboxyl me	0.706	0.439	0.489	7.8e-39
TAIR|locus:2161680	386	IAMT1 "AT5G55250" [Arabidopsis	0.888	0.556	0.394	7e-38

TAIR|locus:2144466 AT5G38020 [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 123/240 (51%), Positives = 166/240 (69%)

Query:     4 VNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMF-SSSFPGCFNVADLGCSSG 62
             + V  M GG GE SYA NS  Q+ + S A P + ET+K+M   + FPGC  VADLGCSSG
Sbjct:     1 MGVLSMKGGDGEHSYANNSEGQKRLASDAKPVVVETVKEMIVKTDFPGCIKVADLGCSSG 60

Query:    63 PNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFG 122
              NTLLV+S+I+++I   Y Q  K LPE    LNDLP NDFN+ F+ +P F++ +K D  G
Sbjct:    61 ENTLLVMSEIVNTIITSYQQKGKNLPEINCCLNDLPDNDFNTTFKLVPAFHKLLKMDVKG 120

Query:   123 PCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQA 182
              CFI+G+ GSFY RLFPS+ ++F+HSS  +HWLSKVP+ LE+NK+++Y+    PP+V ++
Sbjct:   121 KCFISGVPGSFYSRLFPSKSLHFVHSSLCLHWLSKVPDGLEDNKKNVYLRSPCPPNVYKS 180

Query:   183 FWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQLANE 242
             +  QF+ DFS FL LR++E V  GRM LTF+GR   DP SKDC   W  ++ SL+ L +E
Sbjct:   181 YLTQFKNDFSLFLRLRADETVPNGRMALTFVGRKSLDPLSKDCFQNWSSISDSLLDLVSE 240

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2095572 AT3G21950 [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 114/240 (47%), Positives = 166/240 (69%)

Query:     4 VNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMF-SSSFPGCFNVADLGCSSG 62
             + V  M GG GE SYA NS  Q+++ S A P + +++ +M     FPGC  VADLGCSSG
Sbjct:     1 MGVVSMKGGDGEHSYANNSEAQKSITSDAKPEVMKSVNEMIVKMDFPGCIKVADLGCSSG 60

Query:    63 PNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFG 122
              NT LV+S+I+++I   Y Q  + LPE    LNDLP NDFN+ F+ +P F+E++K +  G
Sbjct:    61 ENTFLVMSEIVNTIITTYQQNGQNLPEIDCCLNDLPENDFNTTFKLIPSFHEKLKMNVKG 120

Query:   123 PCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQA 182
              C+++G  GSFY RLFPS+ ++F+HSS+ +HWLSKVP+ LE NK+++Y+    PP++ ++
Sbjct:   121 NCYVSGCPGSFYTRLFPSKSLHFVHSSFCLHWLSKVPDGLEENKKNVYLRSPCPPNLYES 180

Query:   183 FWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQLANE 242
             +W QF++DFS FL +R+EE +  GRM LT +GR   DP SK+C   W L++ SL+ L +E
Sbjct:   181 YWNQFKKDFSMFLRMRAEETMPSGRMALTLVGRKTLDPLSKECFKDWSLVSDSLLDLVSE 240

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2154845 AT5G66430 [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 119/236 (50%), Positives = 165/236 (69%)

Query:     9 MNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSS-SFPGCFNVADLGCSSGPNTLL 67
             M+GG G+ SY+ NS +Q+ V+SKA P L +  K M  + +FP    VADLGC++G NT L
Sbjct:     1 MSGGDGDNSYSTNSLLQKKVLSKAKPVLVKNTKGMMINLNFPNYIKVADLGCATGENTFL 60

Query:    68 VVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIA 127
              +++I+++I+ L  Q N+K PE    LNDLP NDFN+ F+ +P F +R+K  +   CF++
Sbjct:    61 TMAEIVNTINVLCQQCNQKPPEIDCCLNDLPDNDFNTTFKFVPFFNKRVKSKRL--CFVS 118

Query:   128 GMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQF 187
             G+ GSFY RLFP + ++F+HSSYS+HWLSKVP+ LE N   +YIT SSPP+  +A+  QF
Sbjct:   119 GVPGSFYSRLFPRKSLHFVHSSYSLHWLSKVPKGLEKNSSSVYITTSSPPNAYKAYLNQF 178

Query:   188 QRDFSAFLSLRSEEIVSGGRMFLTFLGR-SIADPSSKDCCCLWELLTKSLIQLANE 242
             Q DF +FL +RSEE+VS GRM LTF+GR ++ DP  +DCC  W LL+ SL  L  E
Sbjct:   179 QSDFKSFLEMRSEEMVSNGRMVLTFIGRKTLDDPLHRDCCHFWTLLSTSLRDLVYE 234

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2179929 NAMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 125/237 (52%), Positives = 157/237 (66%)

Query:     8 CMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKD-MFSSSFPGCFNVADLGCSSGPNTL 66
             CM GG G  SY+ NS +QR V+SKA P L +  KD M + +FP    VADLGCSSG NT 
Sbjct:    59 CMRGGDGYNSYSSNSLLQRRVLSKAKPVLVKNTKDLMINLNFPTYIKVADLGCSSGQNTF 118

Query:    67 LVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFI 126
             L +S+II++I+    Q N+  PE    LNDLP NDFN+ F+ +  F+  +        F+
Sbjct:   119 LAMSEIINTINVFCQQRNQNPPEIDCCLNDLPSNDFNTTFKFI-QFFNGMNITSKESYFV 177

Query:   127 AGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQ 186
              G+ GSFY RLFP R ++F+HSSY +HWLSKVPE LE NK  +YIT SSP S  +A+  Q
Sbjct:   178 YGVPGSFYSRLFPRRSLHFVHSSYGLHWLSKVPEGLEKNKMSVYITNSSPLSTYKAYLNQ 237

Query:   187 FQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIAD-PSSKDCCCLWELLTKSLIQLANE 242
             FQRDF+ FL LRSEE+VS GRM LTF+GR+  D P  +DCC  W LL+KSL  L  E
Sbjct:   238 FQRDFATFLKLRSEEMVSNGRMVLTFIGRNTIDNPLHRDCCHFWTLLSKSLRDLVAE 294

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

TAIR|locus:2080747 BSMT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 121/241 (50%), Positives = 157/241 (65%)

Query:     4 VNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSS-SFPGCFNVADLGCSSG 62
             V   CM+GG G  SY+ NS +Q+ V+S A P L    ++M  +  FP    VA+LGCSSG
Sbjct:    26 VKALCMSGGDGANSYSANSRLQKKVLSMAKPVLVRNTEEMMMNLDFPTYIKVAELGCSSG 85

Query:    63 PNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFG 122
              N+ L + +II++I+ L   VNK  PE    LNDLP NDFN+ F+ +P F + +      
Sbjct:    86 QNSFLAIFEIINTINVLCQHVNKNSPEIDCCLNDLPENDFNTTFKFVPFFNKELMITNKS 145

Query:   123 PCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQA 182
              CF+ G  GSFY RLF    ++ IHSSY++HWLSKVPE LENNK ++YIT SSP S  +A
Sbjct:   146 SCFVYGAPGSFYSRLFSRNSLHLIHSSYALHWLSKVPEKLENNKGNLYITSSSPQSAYKA 205

Query:   183 FWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRS-IADPSSKDCCCLWELLTKSLIQLAN 241
             +  QFQ+DF+ FL LRSEEIVS GRM LTF+GR+ + DP  +DCC  W LL+ SL  L  
Sbjct:   206 YLNQFQKDFTMFLRLRSEEIVSNGRMVLTFIGRNTLNDPLYRDCCHFWTLLSNSLRDLVF 265

Query:   242 E 242
             E
Sbjct:   266 E 266

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006952 "defense response" evidence=IEP

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0051707 "response to other organism" evidence=IEP

GO:0052624 "2-phytyl-1,4-naphthoquinone methyltransferase activity" evidence=IDA

GO:0080150 "S-adenosyl-L-methionine:benzoic acid carboxyl methyl transferase activity" evidence=IDA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2053458 AT2G14060 [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 109/235 (46%), Positives = 161/235 (68%)

Query:     9 MNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMF-SSSFPGCFNVADLGCSSGPNTLL 67
             M GG G+ SYA NS+ QR+V  +  P + E +++M   + FPGC  VADLGCS+G NT+L
Sbjct:     1 MKGGTGDHSYATNSHYQRSVFYEIQPLVIENVREMLLKNGFPGCIKVADLGCSTGQNTVL 60

Query:    68 VVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIA 127
              +S I  +I + Y Q++K  PE   +LNDLP NDFN+ F+    F E++K +  G  F++
Sbjct:    61 AMSAIAYTIMESYQQMSKNPPEIDCYLNDLPENDFNTTFKLFHSFQEKLKPEVKGKWFVS 120

Query:   128 GMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQF 187
             G+ GSFY RLFP + ++F+HS++S+HWLS++P+ LE+N + I+I    P +V +++  QF
Sbjct:   121 GVPGSFYSRLFPRKSLHFVHSAFSIHWLSRIPDGLESNTKSIHIKYPYPSNVYKSYLNQF 180

Query:   188 QRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQLANE 242
             + DFS FL +RSEE+V  G M LTF+GR ++D  SKDC  +W LL+  L+ LA+E
Sbjct:   181 KIDFSLFLKMRSEEVVHNGHMVLTFVGRKVSDTLSKDCFQVWSLLSDCLLDLASE 235

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2179969 AT5G04380 "AT5G04380" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 114/241 (47%), Positives = 159/241 (65%)

Query:     4 VNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSS-SFPGCFNVADLGCSSG 62
             V   CMNGG  + SY   S +Q+ V+S   P L +  ++M ++  FP C  VADLGCSSG
Sbjct:    29 VGALCMNGGDVDNSYTTKSLLQKRVLSITNPILVKNTEEMLTNLDFPKCIKVADLGCSSG 88

Query:    63 PNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFG 122
              NT L +S+I+++I+ L  + N+  PE    LNDLP NDFN+ F+ +  F +++  +  G
Sbjct:    89 QNTFLAMSEIVNTINVLCQKWNQSRPEIDCCLNDLPTNDFNTTFKFITFFNKKLTSN--G 146

Query:   123 PCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQA 182
              CF++G+ GSFY RLFP + ++FI+S YS+H+LSKVP+ LE NK  +YIT SSP S  +A
Sbjct:   147 SCFVSGVPGSFYSRLFPRKSLHFIYSIYSIHFLSKVPDGLEKNKMSVYITSSSPLSEYKA 206

Query:   183 FWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIAD-PSSKDCCCLWELLTKSLIQLAN 241
             +  QF+RDF+ FL +RSEE+V  GRM LT +GR+  D P  +DCC  W LL+ SL  L  
Sbjct:   207 YLNQFKRDFTTFLRMRSEEMVHNGRMVLTLIGRNTLDNPLYRDCCHCWTLLSNSLRDLVF 266

Query:   242 E 242
             E
Sbjct:   267 E 267

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

TAIR|locus:2115400 AT4G36470 [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 110/243 (45%), Positives = 151/243 (62%)

Query:     9 MNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLV 68
             M GG G+TSYA+NS++Q+     A     ET++ ++  + P    +ADLGCSSGPNTL  
Sbjct:    12 MTGGDGKTSYARNSSLQKKASDTAKHITLETLQQLYKETRPKSLGIADLGCSSGPNTLST 71

Query:    69 VSKIIDSIHKLYHQVN--KKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPC- 124
             ++  I ++   +H+    + LPEF +FLNDLPGNDFN IF+SLPDF+  +K+D   G C 
Sbjct:    72 ITDFIKTVQVAHHREIPIQPLPEFSIFLNDLPGNDFNFIFKSLPDFHIELKRDNNNGDCP 131

Query:   125 --FIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN------NKRDIYITKSSP 176
               FIA   GSFY RLFP   I+F+++S+S+HWLSKVP  L +      NK  + I   S 
Sbjct:   132 SVFIAAYPGSFYGRLFPENTIHFVYASHSLHWLSKVPTALYDEQGKSINKGCVSICSLSS 191

Query:   177 PSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSL 236
              +V +A+  QF+ DFS FL  RS+E+VS GRM L  LGR   D   +     WELL++S+
Sbjct:   192 EAVSKAYCSQFKEDFSIFLRCRSKEMVSAGRMVLIILGREGPDHVDRGNSFFWELLSRSI 251

Query:   237 IQL 239
               L
Sbjct:   252 ADL 254

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS;IMP

TAIR|locus:2013149 JMT "jasmonic acid carboxyl methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 89/182 (48%), Positives = 118/182 (64%)

Query:     1 MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKD-MFSSSFPGCFNVADLGC 59
             M V+ V  MN G GETSYAKNS  Q  ++S     ++E +K  M S+S      +ADLGC
Sbjct:     1 MEVMRVLHMNKGNGETSYAKNSTAQSNIISLGRRVMDEALKKLMMSNSEISSIGIADLGC 60

Query:    60 SSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKD 119
             SSGPN+LL +S I+D+IH L   +++ +PE +V LNDLP NDFN I  SLP+FY+R+  +
Sbjct:    61 SSGPNSLLSISNIVDTIHNLCPDLDRPVPELRVSLNDLPSNDFNYICASLPEFYDRVNNN 120

Query:   120 K----FG-----PCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIY 170
             K    FG      CF++ + GSFY RLFP R ++F+HSS S+HWLS+VP   E  K D  
Sbjct:   121 KEGLGFGRGGGESCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQVPCR-EAEKEDRT 179

Query:   171 IT 172
             IT
Sbjct:   180 IT 181

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=NAS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009694 "jasmonic acid metabolic process" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0030795 "jasmonate O-methyltransferase activity" evidence=IMP;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2161680 IAMT1 "AT5G55250" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 90/228 (39%), Positives = 127/228 (55%)

Query:     9 MNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMF--SSSFPGCFNVADLGCSSGPNTL 66
             M GG G+ SYA NS  Q          LEET++++   SS+ P  F   DLGCSSG NT+
Sbjct:    21 MKGGKGQDSYANNSQAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTV 80

Query:    67 LVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFY------ERIKKDK 120
              ++  I+  I K +       PEF  F +DLP NDFN++F+ LP         E +  D 
Sbjct:    81 HIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADG 140

Query:   121 FGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIY-----ITKSS 175
                 F+AG+ GSFY+RLFP+R I+F HS++S+HWLS+VPE++ + +   Y         +
Sbjct:   141 NRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGA 200

Query:   176 PPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSK 223
                   A+  QFQ D + FL  R+ E+  GG MFL  LGR+  DP+ +
Sbjct:   201 GEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQ 248

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IMP

GO:0051749 "indole acetic acid carboxyl methyltransferase activity" evidence=IDA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0010252 "auxin homeostasis" evidence=IMP

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
pfam03492	331	pfam03492, Methyltransf_7, SAM dependent carboxyl	1e-100
PLN02668	386	PLN02668, PLN02668, indole-3-acetate carboxyl meth	6e-61

>gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase

 Score =  294 bits (754), Expect = e-100
 Identities = 109/215 (50%), Positives = 144/215 (66%), Gaps = 13/215 (6%)

Query: 36  LEETIKDMFS-SSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVN-KKLPEFQVF 93
           LEE I ++   + FP    +ADLGCSSGPNT L VS IID++ K Y + N  + PEFQVF
Sbjct: 1   LEEAISELLLRNLFPNSIKIADLGCSSGPNTFLAVSNIIDTVEKKYQKENILEPPEFQVF 60

Query: 94  LNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVH 153
            NDLP NDFN++F+ LP F       K    F++G+ GSFY RLFP   ++F+HSSYS+H
Sbjct: 61  FNDLPSNDFNTLFKLLPPFQ-----KKKRSYFVSGVPGSFYGRLFPRNSLHFVHSSYSLH 115

Query: 154 WLSKVPENLEN------NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR 207
           WLS+VP+ LE+      NK +IYI+ +SP  V +A+ +QF++DFS FL  R+EE+VSGG 
Sbjct: 116 WLSQVPKGLEDKESPAWNKGNIYISGASPEEVYKAYLDQFKKDFSLFLRARAEELVSGGL 175

Query: 208 MFLTFLGRSIADPSSKDCCCLWELLTKSLIQLANE 242
           M LTFLGR   DPS  +C   W+LL  +L  L +E
Sbjct: 176 MVLTFLGRPSVDPSETECGIFWDLLGDALNDLVSE 210

This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesised through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyzes the second step to produce theobromine. Length = 331

>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase

 Score =  195 bits (498), Expect = 6e-61
 Identities = 93/230 (40%), Positives = 129/230 (56%), Gaps = 15/230 (6%)

Query: 8   CMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGC-FNVADLGCSSGPNTL 66
           CM GG GE SYA NS  Q          LEET+ ++  +S P   F   DLGCSSG NT+
Sbjct: 20  CMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTI 79

Query: 67  LVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLP-------DFYERIKKD 119
            ++  I+  + K Y       PEF  F +DLP NDFN++F+ LP          E +   
Sbjct: 80  HIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAAS 139

Query: 120 KFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN------NKRDIYITK 173
                F AG+ GSFY+RLFP+R I+  HS++S+HWLS+VPE++ +      NK  ++I  
Sbjct: 140 GHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHG 199

Query: 174 SSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSK 223
           +S  S   A+  QFQ D + FL  R++E+  GG MFL  LGR+  DP+ +
Sbjct: 200 AS-ESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQ 248

Length = 386

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
PLN02668	386	indole-3-acetate carboxyl methyltransferase	100.0
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	100.0
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.22
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.21
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.04
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.02
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.74
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.66
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.61
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.59
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.57
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.54
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.53
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.49
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.48
PLN02244	340	tocopherol O-methyltransferase	98.47
PRK11207	197	tellurite resistance protein TehB; Provisional	98.45
PLN02336	475	phosphoethanolamine N-methyltransferase	98.43
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.43
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.42
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.41
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.37
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.36
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.34
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.33
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.3
PRK12335	287	tellurite resistance protein TehB; Provisional	98.3
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.3
TIGR03438	301	probable methyltransferase. This model represents	98.29
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.29
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.28
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.27
PRK06922	677	hypothetical protein; Provisional	98.26
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.25
PRK08317	241	hypothetical protein; Provisional	98.25
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.19
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.17
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.16
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.15
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.14
KOG2940	325	consensus Predicted methyltransferase [General fun	98.14
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.14
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.13
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.09
PLN02490	340	MPBQ/MSBQ methyltransferase	98.07
PRK06202	232	hypothetical protein; Provisional	98.06
PLN02336	475	phosphoethanolamine N-methyltransferase	98.05
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.04
PRK05785	226	hypothetical protein; Provisional	98.03
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.99
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.95
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.94
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	97.93
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.92
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.89
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.84
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.84
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.78
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.78
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.76
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.74
KOG3010	261	consensus Methyltransferase [General function pred	97.74
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.73
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.7
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.65
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.64
KOG2361	264	consensus Predicted methyltransferase [General fun	97.64
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.63
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.61
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.58
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.54
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.51
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.47
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.44
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	97.43
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.41
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.41
COG4123	248	Predicted O-methyltransferase [General function pr	97.41
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.39
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.34
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.33
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.33
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.31
TIGR00438	188	rrmJ cell division protein FtsJ.	97.28
PRK04266	226	fibrillarin; Provisional	97.27
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.26
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.26
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.26
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.25
PLN03075	296	nicotianamine synthase; Provisional	97.23
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	97.22
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.21
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.2
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.18
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.16
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.13
PHA03411	279	putative methyltransferase; Provisional	97.1
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.09
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.09
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.04
PTZ00146	293	fibrillarin; Provisional	97.0
PRK14903	431	16S rRNA methyltransferase B; Provisional	96.88
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.87
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	96.87
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.86
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.83
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	96.83
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.81
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.81
PRK14967	223	putative methyltransferase; Provisional	96.78
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	96.77
PRK14901	434	16S rRNA methyltransferase B; Provisional	96.74
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.69
KOG2904	328	consensus Predicted methyltransferase [General fun	96.68
PRK14968	188	putative methyltransferase; Provisional	96.67
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.65
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	96.64
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.64
COG2890	280	HemK Methylase of polypeptide chain release factor	96.64
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.53
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	96.47
KOG4300	252	consensus Predicted methyltransferase [General fun	96.45
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	96.45
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.45
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.35
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	96.31
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	96.31
PLN02585	315	magnesium protoporphyrin IX methyltransferase	96.27
PRK00811	283	spermidine synthase; Provisional	96.27
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	96.23
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	96.22
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	96.13
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.06
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.89
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	95.76
PRK07402	196	precorrin-6B methylase; Provisional	95.76
KOG1331	293	consensus Predicted methyltransferase [General fun	95.64
PRK04457	262	spermidine synthase; Provisional	95.6
PHA03412	241	putative methyltransferase; Provisional	95.33
PRK01581	374	speE spermidine synthase; Validated	95.3
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	95.18
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	95.12
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	94.94
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	94.92
PLN02672	1082	methionine S-methyltransferase	94.9
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	94.84
PLN02366	308	spermidine synthase	94.65
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	94.21
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	94.11
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	94.04
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	94.01
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	93.91
KOG2899	288	consensus Predicted methyltransferase [General fun	93.89
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	93.84
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	93.7
PRK03612	521	spermidine synthase; Provisional	93.3
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	93.29
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	93.09
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	92.9
COG4976	287	Predicted methyltransferase (contains TPR repeat)	92.77
PRK13256	226	thiopurine S-methyltransferase; Reviewed	92.22
PF13679	141	Methyltransf_32: Methyltransferase domain	90.55
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	90.34
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	90.16
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	90.05
KOG1271	227	consensus Methyltransferases [General function pre	89.83
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	89.33
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	88.99
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	88.06
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	87.4
PRK04148	134	hypothetical protein; Provisional	87.4
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	87.06
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	87.06
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	86.14
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	85.37
PLN02589	247	caffeoyl-CoA O-methyltransferase	84.46
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	84.12
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	84.09
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	83.09
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	82.95
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	82.8
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	82.79
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	81.63
PLN02476	278	O-methyltransferase	80.55

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=100.00  E-value=8.4e-76  Score=545.35  Aligned_cols=241  Identities=40%  Similarity=0.704  Sum_probs=220.3

Q ss_pred             CCccccccccCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCC-CccEEeeecCCCCcchHHHHHHHHHHHHHH
Q 043411            1 MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFP-GCFNVADLGCSSGPNTLLVVSKIIDSIHKL   79 (242)
Q Consensus         1 ~~~~~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~-~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~   79 (242)
                      |+++++|||+||+|++||++||.+|++++..++|+|+++|++++....| ++++|||||||+|+||+.+++.||++|+++
T Consensus        13 m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~   92 (386)
T PLN02668         13 MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKR   92 (386)
T ss_pred             ceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999988654434 689999999999999999999999999999


Q ss_pred             HhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhh-------hhcCCCCceeeccccccccccCCCCceeEEEcccce
Q 043411           80 YHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERI-------KKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSV  152 (242)
Q Consensus        80 ~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l-------~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~al  152 (242)
                      |.+.+..+|++||||||||+||||+||++|+.+++.+       ...+.++||++|||||||+||||++|+||+||++||
T Consensus        93 ~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl  172 (386)
T PLN02668         93 YESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSL  172 (386)
T ss_pred             hhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccc
Confidence            9877777889999999999999999999999876542       112334699999999999999999999999999999


Q ss_pred             eecccCCCcccC------CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCCCCCCCCh-h
Q 043411          153 HWLSKVPENLEN------NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKD-C  225 (242)
Q Consensus       153 hWLs~~P~~~~~------nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~-~  225 (242)
                      ||||++|+.+.+      |||+||+.+++ +.|.+||++||++||..||++||+||+|||+|+++++||++.++..++ .
T Consensus       173 HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s-~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~  251 (386)
T PLN02668        173 HWLSQVPESVTDKRSAAYNKGRVFIHGAS-ESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGA  251 (386)
T ss_pred             eecccCchhhccCCcccccCCceEecCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCch
Confidence            999999999874      99999999887 889999999999999999999999999999999999999988877665 6


Q ss_pred             hHHHHH-HHHHHHHHHcC
Q 043411          226 CCLWEL-LTKSLIQLANE  242 (242)
Q Consensus       226 ~~~~~~-l~~~l~dmv~e  242 (242)
                      +.+|++ ++++|+|||.|
T Consensus       252 ~~~~~~~l~~al~dlv~e  269 (386)
T PLN02668        252 GLLFGTHFQDAWDDLVQE  269 (386)
T ss_pred             hHHHHHHHHHHHHHHHHc
Confidence            778887 99999999986

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=100.00  E-value=5.1e-67  Score=481.16  Aligned_cols=205  Identities=57%  Similarity=1.018  Sum_probs=175.6

Q ss_pred             HHHHHHhhhc-cCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhc-CCCCceEEEecCCCCCchHHHhhcCchhH
Q 043411           36 LEETIKDMFS-SSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVN-KKLPEFQVFLNDLPGNDFNSIFESLPDFY  113 (242)
Q Consensus        36 l~~ai~~~~~-~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~-~~~~~~qv~~nDLp~NDFn~lf~~l~~~~  113 (242)
                      |++||.+++. ...+++++|||||||+|+||+.+++.||++|+++|++.+ +++|+|||||||||+||||+||++|+.+.
T Consensus         1 ~~~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~   80 (334)
T PF03492_consen    1 LEEAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQ   80 (334)
T ss_dssp             -HHHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHH
T ss_pred             ChHHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhh
Confidence            5788998875 346789999999999999999999999999999998765 67889999999999999999999999987


Q ss_pred             HhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccC------CCCceEEcCCCChHHHHHHHHHH
Q 043411          114 ERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN------NKRDIYITKSSPPSVCQAFWEQF  187 (242)
Q Consensus       114 ~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~------nkg~i~~~~~s~~~v~~ay~~q~  187 (242)
                      +++..  .++||++|||||||+||||++||||+||++||||||++|+.+.+      |||+||+.++++++|.+||++||
T Consensus        81 ~~~~~--~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf  158 (334)
T PF03492_consen   81 QSLKK--FRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQF  158 (334)
T ss_dssp             HHHHH--TTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHH
T ss_pred             hccCC--CceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHH
Confidence            77654  67999999999999999999999999999999999999999988      99999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccCceEEEEecccCCCCCCCChhhHHHHHHHHHHHHHHcC
Q 043411          188 QRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQLANE  242 (242)
Q Consensus       188 ~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~l~~~l~dmv~e  242 (242)
                      ++||.+||++||+||+|||+|+++++||++.++...+.+.+|++|+++|+|||.|
T Consensus       159 ~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~e  213 (334)
T PF03492_consen  159 QKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAE  213 (334)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999998777776778999999999999986

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.22  E-value=4.8e-11  Score=104.80  Aligned_cols=128  Identities=17%  Similarity=0.246  Sum_probs=85.4

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEec
Q 043411           16 TSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLN   95 (242)
Q Consensus        16 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~n   95 (242)
                      .+|.+++.+|+.+...+...+..          ...-+|+|+|||+|.++..+.        +.         ..+++..
T Consensus        18 ~~Y~~~~~~q~~~a~~l~~~l~~----------~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~~   70 (251)
T PRK10258         18 AHYEQHAELQRQSADALLAMLPQ----------RKFTHVLDAGCGPGWMSRYWR--------ER---------GSQVTAL   70 (251)
T ss_pred             HhHhHHHHHHHHHHHHHHHhcCc----------cCCCeEEEeeCCCCHHHHHHH--------Hc---------CCeEEEE
Confidence            57999999999888877655431          235789999999998776542        11         2567888


Q ss_pred             CCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCC
Q 043411           96 DLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSS  175 (242)
Q Consensus        96 DLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s  175 (242)
                      |+..           ..............|   +.+++..-.+|++++|+++|+.++||..+.+.               
T Consensus        71 D~s~-----------~~l~~a~~~~~~~~~---~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~---------------  121 (251)
T PRK10258         71 DLSP-----------PMLAQARQKDAADHY---LAGDIESLPLATATFDLAWSNLAVQWCGNLST---------------  121 (251)
T ss_pred             ECCH-----------HHHHHHHhhCCCCCE---EEcCcccCcCCCCcEEEEEECchhhhcCCHHH---------------
Confidence            8752           111111110001223   33466444568889999999999999655322               


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411          176 PPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSI  217 (242)
Q Consensus       176 ~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~  217 (242)
                                        +|..-.+-|+|||.+++++++.++
T Consensus       122 ------------------~l~~~~~~Lk~gG~l~~~~~~~~~  145 (251)
T PRK10258        122 ------------------ALRELYRVVRPGGVVAFTTLVQGS  145 (251)
T ss_pred             ------------------HHHHHHHHcCCCeEEEEEeCCCCc
Confidence                              666667788999999999998754

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.21  E-value=5.7e-11  Score=101.79  Aligned_cols=135  Identities=19%  Similarity=0.315  Sum_probs=93.0

Q ss_pred             cchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEe
Q 043411           15 ETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFL   94 (242)
Q Consensus        15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~   94 (242)
                      ..+|.+.+..|+.+...+.+.+....       ...+.+|+|+|||+|..+..+.+..               +..+++.
T Consensus         6 ~~~y~~~~~~q~~~~~~l~~~~~~~~-------~~~~~~vLDlG~G~G~~~~~l~~~~---------------~~~~~~~   63 (240)
T TIGR02072         6 AKTYDRHAKIQREMAKRLLALLKEKG-------IFIPASVLDIGCGTGYLTRALLKRF---------------PQAEFIA   63 (240)
T ss_pred             hhchhHHHHHHHHHHHHHHHHhhhhc-------cCCCCeEEEECCCccHHHHHHHHhC---------------CCCcEEE
Confidence            46799999999998888887776431       1245789999999999877665321               2466777


Q ss_pred             cCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCC
Q 043411           95 NDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKS  174 (242)
Q Consensus        95 nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~  174 (242)
                      .|+.....+..-+.++          .+-.|   +-+++.+..+|++++|++++..++||+.+.                
T Consensus        64 ~D~~~~~~~~~~~~~~----------~~~~~---~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~----------------  114 (240)
T TIGR02072        64 LDISAGMLAQAKTKLS----------ENVQF---ICGDAEKLPLEDSSFDLIVSNLALQWCDDL----------------  114 (240)
T ss_pred             EeChHHHHHHHHHhcC----------CCCeE---EecchhhCCCCCCceeEEEEhhhhhhccCH----------------
Confidence            7875322222211111          01122   344666667789999999999999996432                


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411          175 SPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSI  217 (242)
Q Consensus       175 s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~  217 (242)
                                       ..+|+...+-|+|||+++++.++...
T Consensus       115 -----------------~~~l~~~~~~L~~~G~l~~~~~~~~~  140 (240)
T TIGR02072       115 -----------------SQALSELARVLKPGGLLAFSTFGPGT  140 (240)
T ss_pred             -----------------HHHHHHHHHHcCCCcEEEEEeCCccC
Confidence                             22788888889999999999876644

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.04  E-value=8.3e-10  Score=97.23  Aligned_cols=126  Identities=18%  Similarity=0.260  Sum_probs=80.6

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEec
Q 043411           16 TSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLN   95 (242)
Q Consensus        16 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~n   95 (242)
                      ..|.+++..|.+....++..+.          .....+|+|+|||+|..+..+.+..               |..+|+..
T Consensus         7 ~~Y~~~~~~~~~~~~~ll~~~~----------~~~~~~vLDiGcG~G~~~~~la~~~---------------~~~~v~gv   61 (258)
T PRK01683          7 SLYLKFEDERTRPARDLLARVP----------LENPRYVVDLGCGPGNSTELLVERW---------------PAARITGI   61 (258)
T ss_pred             HHHHHHHHHhhcHHHHHHhhCC----------CcCCCEEEEEcccCCHHHHHHHHHC---------------CCCEEEEE
Confidence            5699988888666554433221          1345799999999999987665221               24678888


Q ss_pred             CCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCC
Q 043411           96 DLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSS  175 (242)
Q Consensus        96 DLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s  175 (242)
                      |+.. +.-...+.      ..    .+--|   +.+++ ..+.|++++|+++|+.++||+.+.+                
T Consensus        62 D~s~-~~i~~a~~------~~----~~~~~---~~~d~-~~~~~~~~fD~v~~~~~l~~~~d~~----------------  110 (258)
T PRK01683         62 DSSP-AMLAEARS------RL----PDCQF---VEADI-ASWQPPQALDLIFANASLQWLPDHL----------------  110 (258)
T ss_pred             ECCH-HHHHHHHH------hC----CCCeE---EECch-hccCCCCCccEEEEccChhhCCCHH----------------
Confidence            8762 11111111      00    01122   23355 3456778999999999999964421                


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecc
Q 043411          176 PPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       176 ~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                                       .+|+.-.+-|+|||.+++.+.+
T Consensus       111 -----------------~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683        111 -----------------ELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             -----------------HHHHHHHHhcCCCcEEEEECCC
Confidence                             2677777889999999998643

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.02  E-value=6.6e-10  Score=98.11  Aligned_cols=124  Identities=15%  Similarity=0.228  Sum_probs=81.2

Q ss_pred             chHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEec
Q 043411           16 TSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLN   95 (242)
Q Consensus        16 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~n   95 (242)
                      ..|.+++..|.+....++..+.          .....+|+|+|||+|..+..+.+..               |..+|+--
T Consensus         5 ~~y~~~~~~~~~~~~~ll~~l~----------~~~~~~vLDlGcG~G~~~~~l~~~~---------------p~~~v~gv   59 (255)
T PRK14103          5 DVYLAFADHRGRPFYDLLARVG----------AERARRVVDLGCGPGNLTRYLARRW---------------PGAVIEAL   59 (255)
T ss_pred             HHHHHHHhHhhCHHHHHHHhCC----------CCCCCEEEEEcCCCCHHHHHHHHHC---------------CCCEEEEE
Confidence            5799999999877655443322          1245899999999998876554211               23567777


Q ss_pred             CCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCC
Q 043411           96 DLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSS  175 (242)
Q Consensus        96 DLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s  175 (242)
                      |+-. +.....+.          .  +-.|   +.+++ +.+.|.+++|+++|..++||+.+.+.               
T Consensus        60 D~s~-~~~~~a~~----------~--~~~~---~~~d~-~~~~~~~~fD~v~~~~~l~~~~d~~~---------------  107 (255)
T PRK14103         60 DSSP-EMVAAARE----------R--GVDA---RTGDV-RDWKPKPDTDVVVSNAALQWVPEHAD---------------  107 (255)
T ss_pred             ECCH-HHHHHHHh----------c--CCcE---EEcCh-hhCCCCCCceEEEEehhhhhCCCHHH---------------
Confidence            7741 11111111          0  1112   33566 45667889999999999999754222               


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecc
Q 043411          176 PPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       176 ~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                                        +|+.-.+-|+|||++++...+
T Consensus       108 ------------------~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103        108 ------------------LLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             ------------------HHHHHHHhCCCCcEEEEEcCC
Confidence                              566667788999999998765

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.74  E-value=1.3e-08  Score=74.62  Aligned_cols=95  Identities=22%  Similarity=0.269  Sum_probs=59.3

Q ss_pred             eeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccc
Q 043411           55 ADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFY  134 (242)
Q Consensus        55 aDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy  134 (242)
                      +|+|||+|.++..+.+.                +..+++-.|...     -.  +...++..   ....+-  -+-+++.
T Consensus         1 LdiG~G~G~~~~~l~~~----------------~~~~v~~~D~~~-----~~--~~~~~~~~---~~~~~~--~~~~d~~   52 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR----------------GGASVTGIDISE-----EM--LEQARKRL---KNEGVS--FRQGDAE   52 (95)
T ss_dssp             EEET-TTSHHHHHHHHT----------------TTCEEEEEES-H-----HH--HHHHHHHT---TTSTEE--EEESBTT
T ss_pred             CEecCcCCHHHHHHHhc----------------cCCEEEEEeCCH-----HH--HHHHHhcc---cccCch--heeehHH
Confidence            69999999998877622                136677666652     10  01111111   111111  3445787


Q ss_pred             cccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          135 QRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       135 ~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      .--||++|+|++++..++||+.                                 |...+++.-.+=|||||++++
T Consensus        53 ~l~~~~~sfD~v~~~~~~~~~~---------------------------------~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   53 DLPFPDNSFDVVFSNSVLHHLE---------------------------------DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SSSS-TT-EEEEEEESHGGGSS---------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred             hCccccccccccccccceeecc---------------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence            7788999999999999999971                                 233377788888899999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.66  E-value=3.2e-08  Score=79.63  Aligned_cols=97  Identities=22%  Similarity=0.306  Sum_probs=67.2

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|.++..+.        +.        . .+++..|.-.           ......          ..
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~--------~~--------~-~~~~g~D~~~-----------~~~~~~----------~~   62 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALA--------KR--------G-FEVTGVDISP-----------QMIEKR----------NV   62 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHH--------HT--------T-SEEEEEESSH-----------HHHHHT----------TS
T ss_pred             CCCCEEEEEcCCCCHHHHHHH--------Hh--------C-CEEEEEECCH-----------HHHhhh----------hh
Confidence            457899999999998765442        11        1 3777777652           111000          01


Q ss_pred             cccccc--cccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          129 MLGSFY--QRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       129 vpgSFy--~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      .+..|.  ...+|++++|+|+|+.++||+.+.+                                 .+|+.-.+-|+|||
T Consensus        63 ~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~---------------------------------~~l~~l~~~LkpgG  109 (161)
T PF13489_consen   63 VFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPE---------------------------------EFLKELSRLLKPGG  109 (161)
T ss_dssp             EEEEEECHTHHCHSSSEEEEEEESSGGGSSHHH---------------------------------HHHHHHHHCEEEEE
T ss_pred             hhhhhhhhhhhccccchhhHhhHHHHhhcccHH---------------------------------HHHHHHHHhcCCCC
Confidence            222332  4456889999999999999977522                                 28888888999999


Q ss_pred             eEEEEecccC
Q 043411          207 RMFLTFLGRS  216 (242)
Q Consensus       207 ~lvl~~~g~~  216 (242)
                      +++++.+.+.
T Consensus       110 ~l~~~~~~~~  119 (161)
T PF13489_consen  110 YLVISDPNRD  119 (161)
T ss_dssp             EEEEEEEBTT
T ss_pred             EEEEEEcCCc
Confidence            9999999874

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.61  E-value=3.8e-07  Score=81.30  Aligned_cols=116  Identities=16%  Similarity=0.132  Sum_probs=69.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+...+              .+..+|+--|+.. +.-...+.....   .......++  .-+
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~--------------~~~~~V~gvD~S~-~ml~~A~~r~~~---~~~~~~~~i--~~~  132 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKV--------------GSDGKVMGLDFSS-EQLAVAASRQEL---KAKSCYKNI--EWI  132 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHh--------------CCCCEEEEEECCH-HHHHHHHHHhhh---hhhccCCCe--EEE
Confidence            45799999999999876554221              1234666666652 111111110000   000001121  123


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .++..+--+|++++|++++++++||+.+..                                 .+|+.-.+-|+|||+++
T Consensus       133 ~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~---------------------------------~~l~ei~rvLkpGG~l~  179 (261)
T PLN02233        133 EGDATDLPFDDCYFDAITMGYGLRNVVDRL---------------------------------KAMQEMYRVLKPGSRVS  179 (261)
T ss_pred             EcccccCCCCCCCEeEEEEecccccCCCHH---------------------------------HHHHHHHHHcCcCcEEE
Confidence            345544457889999999999999965422                                 26777777889999999


Q ss_pred             EEecccCCC
Q 043411          210 LTFLGRSIA  218 (242)
Q Consensus       210 l~~~g~~~~  218 (242)
                      +..+.+.+.
T Consensus       180 i~d~~~~~~  188 (261)
T PLN02233        180 ILDFNKSTQ  188 (261)
T ss_pred             EEECCCCCc
Confidence            999987653

>TIGR00740 methyltransferase, putative

Probab=98.59  E-value=5e-07  Score=78.93  Aligned_cols=114  Identities=19%  Similarity=0.190  Sum_probs=70.7

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+.+             ..|..+++--|+-. ++-...+.      .+.... ...-+..+
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~-------------~~p~~~v~gvD~s~-~ml~~a~~------~~~~~~-~~~~v~~~  111 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQ-PMVERCRQ------HIAAYH-SEIPVEIL  111 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhc-------------CCCCCeEEEEeCCH-HHHHHHHH------HHHhcC-CCCCeEEE
Confidence            45689999999999887776332             12357788888742 22222221      111100 01112234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+-.++  ..|++++.+++||++.                               .|...+|+.-.+-|+|||+++
T Consensus       112 ~~d~~~~~~~--~~d~v~~~~~l~~~~~-------------------------------~~~~~~l~~i~~~LkpgG~l~  158 (239)
T TIGR00740       112 CNDIRHVEIK--NASMVILNFTLQFLPP-------------------------------EDRIALLTKIYEGLNPNGVLV  158 (239)
T ss_pred             ECChhhCCCC--CCCEEeeecchhhCCH-------------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence            5677543333  5789999999999743                               123347888888999999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      ++...+..
T Consensus       159 i~d~~~~~  166 (239)
T TIGR00740       159 LSEKFRFE  166 (239)
T ss_pred             EeecccCC
Confidence            98765543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.57  E-value=6e-07  Score=80.12  Aligned_cols=111  Identities=15%  Similarity=0.084  Sum_probs=71.2

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+..        .        ...+|+.-|+.. +.....+...      .  ...+  +..
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~--------~--------~~~~v~giD~s~-~~~~~a~~~~------~--~~~~--i~~  103 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINE--------K--------YGAHVHGVDICE-KMVNIAKLRN------S--DKNK--IEF  103 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHh--------h--------cCCEEEEEECCH-HHHHHHHHHc------C--cCCc--eEE
Confidence            3457999999999998776541        1        125777778752 1111111110      0  0011  223


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++...-+|++++|+++|..++++++   .                            .|...+|+.-++-|+|||++
T Consensus       104 ~~~D~~~~~~~~~~FD~V~s~~~l~h~~---~----------------------------~d~~~~l~~i~r~LkPGG~l  152 (263)
T PTZ00098        104 EANDILKKDFPENTFDMIYSRDAILHLS---Y----------------------------ADKKKLFEKCYKWLKPNGIL  152 (263)
T ss_pred             EECCcccCCCCCCCeEEEEEhhhHHhCC---H----------------------------HHHHHHHHHHHHHcCCCcEE
Confidence            4557766668899999999988776532   1                            24445888888899999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      +++-+....
T Consensus       153 vi~d~~~~~  161 (263)
T PTZ00098        153 LITDYCADK  161 (263)
T ss_pred             EEEEecccc
Confidence            998876544

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.54  E-value=3e-07  Score=79.45  Aligned_cols=112  Identities=12%  Similarity=0.191  Sum_probs=70.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+.+              .+..+++--|+.. ..-...+.      .+......+  +..+
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~-~~~~~a~~------~~~~~~~~~--v~~~  101 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAV--------------GPEGHVIGLDFSE-NMLSVGRQ------KVKDAGLHN--VELV  101 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHh--------------CCCCEEEEEECCH-HHHHHHHH------HHHhcCCCc--eEEE
Confidence            35799999999999887665322              1236778888752 22211111      111111112  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++..-.+|++++|++++..++||+++..                                 .+|+.-.+-|+|||+++
T Consensus       102 ~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~---------------------------------~~l~~~~~~Lk~gG~l~  148 (231)
T TIGR02752       102 HGNAMELPFDDNSFDYVTIGFGLRNVPDYM---------------------------------QVLREMYRVVKPGGKVV  148 (231)
T ss_pred             EechhcCCCCCCCccEEEEecccccCCCHH---------------------------------HHHHHHHHHcCcCeEEE
Confidence            456655456889999999999999964321                                 26666677789999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      +...+.++
T Consensus       149 ~~~~~~~~  156 (231)
T TIGR02752       149 CLETSQPT  156 (231)
T ss_pred             EEECCCCC
Confidence            87766543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.53  E-value=8.2e-07  Score=67.70  Aligned_cols=108  Identities=17%  Similarity=0.185  Sum_probs=63.3

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|..++.+.+..               +..+++--|.-. ++-.+.+....   .  .....++  .-+.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~---------------~~~~v~gvD~s~-~~~~~a~~~~~---~--~~~~~~i--~~~~   58 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLF---------------PGARVVGVDISP-EMLEIARERAA---E--EGLSDRI--TFVQ   58 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHH---------------TTSEEEEEESSH-HHHHHHHHHHH---H--TTTTTTE--EEEE
T ss_pred             CCEEEEEcCcCCHHHHHHHhcC---------------CCCEEEEEeCCH-HHHHHHHHHHH---h--cCCCCCe--EEEE
Confidence            3689999999999999887411               235566556531 22222221110   0  0011121  2233


Q ss_pred             cccccccC-CCCceeEEEccc-ceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          131 GSFYQRLF-PSRGINFIHSSY-SVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       131 gSFy~~l~-p~~svdl~~Ss~-alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +++ .... ..+.+|++++.. ++|++-..                              .+..++|+.-.+-|+|||+|
T Consensus        59 ~d~-~~~~~~~~~~D~v~~~~~~~~~~~~~------------------------------~~~~~~l~~~~~~L~pgG~l  107 (112)
T PF12847_consen   59 GDA-EFDPDFLEPFDLVICSGFTLHFLLPL------------------------------DERRRVLERIRRLLKPGGRL  107 (112)
T ss_dssp             SCC-HGGTTTSSCEEEEEECSGSGGGCCHH------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             Ccc-ccCcccCCCCCEEEECCCccccccch------------------------------hHHHHHHHHHHHhcCCCcEE
Confidence            455 2222 334599999988 66643221                              34556898999999999999


Q ss_pred             EEEe
Q 043411          209 FLTF  212 (242)
Q Consensus       209 vl~~  212 (242)
                      +++.
T Consensus       108 vi~~  111 (112)
T PF12847_consen  108 VINT  111 (112)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9975

...

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.49  E-value=6.1e-07  Score=79.47  Aligned_cols=113  Identities=17%  Similarity=0.270  Sum_probs=76.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      +..+|+|+|||||--|+.+.+.+           +    +-+|+.-|..     .=--...  +++..+....+  +.-|
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~-----------g----~g~v~~~D~s-----~~ML~~a--~~k~~~~~~~~--i~fv  106 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSV-----------G----TGEVVGLDIS-----ESMLEVA--REKLKKKGVQN--VEFV  106 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhc-----------C----CceEEEEECC-----HHHHHHH--HHHhhccCccc--eEEE
Confidence            47999999999999999887444           1    3455555544     3221111  12222111112  3345


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      -|+..+-.||++|+|++.+++.||++.+.+.                                 .|+.-++=|+|||+++
T Consensus       107 ~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~---------------------------------aL~E~~RVlKpgG~~~  153 (238)
T COG2226         107 VGDAENLPFPDNSFDAVTISFGLRNVTDIDK---------------------------------ALKEMYRVLKPGGRLL  153 (238)
T ss_pred             EechhhCCCCCCccCEEEeeehhhcCCCHHH---------------------------------HHHHHHHhhcCCeEEE
Confidence            5588888899999999999999999887666                                 3444444459999999


Q ss_pred             EEecccCCCC
Q 043411          210 LTFLGRSIAD  219 (242)
Q Consensus       210 l~~~g~~~~~  219 (242)
                      +.-+.+....
T Consensus       154 vle~~~p~~~  163 (238)
T COG2226         154 VLEFSKPDNP  163 (238)
T ss_pred             EEEcCCCCch
Confidence            9999987654

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.48  E-value=7.2e-08  Score=72.57  Aligned_cols=98  Identities=17%  Similarity=0.218  Sum_probs=48.0

Q ss_pred             eeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcC-CCCceeecccccc
Q 043411           55 ADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDK-FGPCFIAGMLGSF  133 (242)
Q Consensus        55 aDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~-~~~~f~~~vpgSF  133 (242)
                      +|+|||+|..+..++...               |..+++..|... ++-...      ++.+.... .....+.....+.
T Consensus         1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~-~~l~~a------~~~~~~~~~~~~~~~~~~~~~~   58 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISP-SMLERA------RERLAELGNDNFERLRFDVLDL   58 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC----------------EEEEEEEESSS-STTSTT------CCCHHHCT---EEEEE--SSS-
T ss_pred             CEeCccChHHHHHHHHhC---------------CCCEEEEEECCH-HHHHHH------HHHhhhcCCcceeEEEeecCCh
Confidence            699999999998877333               358888888863 111111      11111100 0111222222222


Q ss_pred             ccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          134 YQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       134 y~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      .. ..+++++|+|+++.++||+.                                 |+..+|+.-++-|+|||+|
T Consensus        59 ~~-~~~~~~fD~V~~~~vl~~l~---------------------------------~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   59 FD-YDPPESFDLVVASNVLHHLE---------------------------------DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ---CCC----SEEEEE-TTS--S----------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred             hh-cccccccceehhhhhHhhhh---------------------------------hHHHHHHHHHHHcCCCCCC
Confidence            12 22237999999999999982                                 2334888888999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02244 tocopherol O-methyltransferase

Probab=98.47  E-value=1.3e-06  Score=80.90  Aligned_cols=110  Identities=14%  Similarity=0.143  Sum_probs=67.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~  128 (242)
                      ...+|+|+|||+|.++..+.+..                ..+|+--|+..+ .-...+.+      ...... .+  +..
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~----------------g~~v~gvD~s~~-~i~~a~~~------~~~~g~~~~--v~~  172 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKY----------------GANVKGITLSPV-QAARANAL------AAAQGLSDK--VSF  172 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhc----------------CCEEEEEECCHH-HHHHHHHH------HHhcCCCCc--eEE
Confidence            45799999999999988776321                134555555421 11111111      110000 11  122


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +-+++.+.-||++++|+++|..++|++.+.+                                 .+|+.-.+-|+|||++
T Consensus       173 ~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~---------------------------------~~l~e~~rvLkpGG~l  219 (340)
T PLN02244        173 QVADALNQPFEDGQFDLVWSMESGEHMPDKR---------------------------------KFVQELARVAAPGGRI  219 (340)
T ss_pred             EEcCcccCCCCCCCccEEEECCchhccCCHH---------------------------------HHHHHHHHHcCCCcEE
Confidence            3346666667899999999999988754311                                 2666667778999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      +++......
T Consensus       220 vi~~~~~~~  228 (340)
T PLN02244        220 IIVTWCHRD  228 (340)
T ss_pred             EEEEecccc
Confidence            998876543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.45  E-value=9.6e-07  Score=75.40  Aligned_cols=107  Identities=17%  Similarity=0.226  Sum_probs=63.5

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|.+++.+.+        +         -.+|+.-|+.. +.-...+...      ......+  +..+.
T Consensus        31 ~~~vLDiGcG~G~~a~~La~--------~---------g~~V~gvD~S~-~~i~~a~~~~------~~~~~~~--v~~~~   84 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAA--------N---------GFDVTAWDKNP-MSIANLERIK------AAENLDN--LHTAV   84 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHH--------C---------CCEEEEEeCCH-HHHHHHHHHH------HHcCCCc--ceEEe
Confidence            47999999999999987752        1         14566667642 1112222111      1111111  22333


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE-
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF-  209 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv-  209 (242)
                      .++.. +-+++++|+++|+.++||++.                               .|...+++.-++-|+|||+++ 
T Consensus        85 ~d~~~-~~~~~~fD~I~~~~~~~~~~~-------------------------------~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         85 VDLNN-LTFDGEYDFILSTVVLMFLEA-------------------------------KTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             cChhh-CCcCCCcCEEEEecchhhCCH-------------------------------HHHHHHHHHHHHHcCCCcEEEE
Confidence            45533 333568999999999999642                               133447777788889999954 


Q ss_pred             EEeccc
Q 043411          210 LTFLGR  215 (242)
Q Consensus       210 l~~~g~  215 (242)
                      +..+..
T Consensus       133 ~~~~~~  138 (197)
T PRK11207        133 VAAMDT  138 (197)
T ss_pred             EEEecC
Confidence            455543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.43  E-value=8.3e-07  Score=85.05  Aligned_cols=110  Identities=16%  Similarity=0.250  Sum_probs=70.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.+..                ..+++--|+.. +.-...+..      ...   ...-+..+
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~----------------~~~v~gvDiS~-~~l~~A~~~------~~~---~~~~v~~~  319 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENF----------------DVHVVGIDLSV-NMISFALER------AIG---RKCSVEFE  319 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhc----------------CCEEEEEECCH-HHHHHHHHH------hhc---CCCceEEE
Confidence            45799999999998776554211                24677777752 211111110      000   01112234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      -+++....+|++++|+++|..+++|+.+.+.                                 +|+.-++-|+|||+++
T Consensus       320 ~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~---------------------------------~l~~~~r~LkpgG~l~  366 (475)
T PLN02336        320 VADCTKKTYPDNSFDVIYSRDTILHIQDKPA---------------------------------LFRSFFKWLKPGGKVL  366 (475)
T ss_pred             EcCcccCCCCCCCEEEEEECCcccccCCHHH---------------------------------HHHHHHHHcCCCeEEE
Confidence            4577777788899999999999999754222                                 6777777889999999


Q ss_pred             EEecccCCC
Q 043411          210 LTFLGRSIA  218 (242)
Q Consensus       210 l~~~g~~~~  218 (242)
                      ++.+.+...
T Consensus       367 i~~~~~~~~  375 (475)
T PLN02336        367 ISDYCRSPG  375 (475)
T ss_pred             EEEeccCCC
Confidence            998876543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.43  E-value=8.2e-07  Score=75.71  Aligned_cols=104  Identities=15%  Similarity=0.212  Sum_probs=61.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      .+.+|+|+|||+|.+++.+.+        +         -.+|+--|+.. +.-...+...      ...+. +  +...
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~--------~---------g~~V~~iD~s~-~~l~~a~~~~------~~~~~-~--v~~~   82 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSL--------A---------GYDVRAWDHNP-ASIASVLDMK------ARENL-P--LRTD   82 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHH--------C---------CCeEEEEECCH-HHHHHHHHHH------HHhCC-C--ceeE
Confidence            357999999999999987762        1         14566667642 2222222111      11111 1  1122


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      ..++ ....+++++|+++|+.++||++.                               .++..+++.-++-|+|||+++
T Consensus        83 ~~d~-~~~~~~~~fD~I~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~ll  130 (195)
T TIGR00477        83 AYDI-NAAALNEDYDFIFSTVVFMFLQA-------------------------------GRVPEIIANMQAHTRPGGYNL  130 (195)
T ss_pred             eccc-hhccccCCCCEEEEecccccCCH-------------------------------HHHHHHHHHHHHHhCCCcEEE
Confidence            2233 12223568999999999999643                               234447888888899999965


Q ss_pred             EEe
Q 043411          210 LTF  212 (242)
Q Consensus       210 l~~  212 (242)
                      +..
T Consensus       131 i~~  133 (195)
T TIGR00477       131 IVA  133 (195)
T ss_pred             EEE
Confidence            543

Part of a tellurite-reducing operon tehA and tehB

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.42  E-value=6.7e-07  Score=79.02  Aligned_cols=107  Identities=16%  Similarity=0.182  Sum_probs=64.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcC-CCCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDK-FGPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~-~~~~f~~~  128 (242)
                      .+.+|+|+|||+|..+..+.+        .         ..+|+..|+.. +.-...+.      ...... ..++  ..
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~--------~---------g~~v~~vD~s~-~~l~~a~~------~~~~~g~~~~v--~~   97 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAE--------L---------GHQVILCDLSA-EMIQRAKQ------AAEAKGVSDNM--QF   97 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHH--------c---------CCEEEEEECCH-HHHHHHHH------HHHhcCCccce--EE
Confidence            467999999999998877651        1         14667777642 22222221      111100 0111  11


Q ss_pred             cccccccc-cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          129 MLGSFYQR-LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       129 vpgSFy~~-l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      +-+++.+- -++++++|++++..++||+.+.+.                                 +|+.-++-|+|||+
T Consensus        98 ~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~---------------------------------~l~~~~~~LkpgG~  144 (255)
T PRK11036         98 IHCAAQDIAQHLETPVDLILFHAVLEWVADPKS---------------------------------VLQTLWSVLRPGGA  144 (255)
T ss_pred             EEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHH---------------------------------HHHHHHHHcCCCeE
Confidence            23354332 146789999999999999764222                                 56666677899999


Q ss_pred             EEEEeccc
Q 043411          208 MFLTFLGR  215 (242)
Q Consensus       208 lvl~~~g~  215 (242)
                      +++.+...
T Consensus       145 l~i~~~n~  152 (255)
T PRK11036        145 LSLMFYNA  152 (255)
T ss_pred             EEEEEECc
Confidence            99876543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.41  E-value=3.3e-06  Score=74.44  Aligned_cols=113  Identities=19%  Similarity=0.196  Sum_probs=67.8

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|.+++.+...+             ..|..+++.-|+.. ++-...+..      +...... .-+..
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~-------------~~~~~~v~gvD~S~-~ml~~A~~~------~~~~~~~-~~v~~  113 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNI-------------HHDNCKIIAIDNSP-AMIERCRRH------IDAYKAP-TPVDV  113 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhc-------------CCCCCeEEEEeCCH-HHHHHHHHH------HHhcCCC-CCeEE
Confidence            345799999999999887765322             11346777777741 333222221      1110000 01222


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+-  |....|++++..++||++.  .                             +...+|+.-++-|+|||.|
T Consensus       114 ~~~d~~~~--~~~~~D~vv~~~~l~~l~~--~-----------------------------~~~~~l~~i~~~LkpGG~l  160 (247)
T PRK15451        114 IEGDIRDI--AIENASMVVLNFTLQFLEP--S-----------------------------ERQALLDKIYQGLNPGGAL  160 (247)
T ss_pred             EeCChhhC--CCCCCCEEehhhHHHhCCH--H-----------------------------HHHHHHHHHHHhcCCCCEE
Confidence            44566443  3335899999999999753  1                             1223677778888999999


Q ss_pred             EEEeccc
Q 043411          209 FLTFLGR  215 (242)
Q Consensus       209 vl~~~g~  215 (242)
                      +++..-.
T Consensus       161 ~l~e~~~  167 (247)
T PRK15451        161 VLSEKFS  167 (247)
T ss_pred             EEEEecC
Confidence            9986443

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.37  E-value=6.6e-07  Score=78.13  Aligned_cols=103  Identities=19%  Similarity=0.373  Sum_probs=67.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      .+-+|.|||||.|..|.++.+        +.       |..+++--|-.           +.+-..-......-.|.-+ 
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~--------Rw-------P~A~i~GiDsS-----------~~Mla~Aa~rlp~~~f~~a-   82 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLAR--------RW-------PDAVITGIDSS-----------PAMLAKAAQRLPDATFEEA-   82 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHH--------hC-------CCCeEeeccCC-----------HHHHHHHHHhCCCCceecc-
Confidence            478999999999999988873        32       34555544433           2211111111111122222 


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                        +- ...-|+...|+++|..++|||.+=|.                                 .|.+--.+|.|||.|+
T Consensus        83 --Dl-~~w~p~~~~dllfaNAvlqWlpdH~~---------------------------------ll~rL~~~L~Pgg~LA  126 (257)
T COG4106          83 --DL-RTWKPEQPTDLLFANAVLQWLPDHPE---------------------------------LLPRLVSQLAPGGVLA  126 (257)
T ss_pred             --cH-hhcCCCCccchhhhhhhhhhccccHH---------------------------------HHHHHHHhhCCCceEE
Confidence              22 55679999999999999999876555                                 5556667889999999


Q ss_pred             EEeccc
Q 043411          210 LTFLGR  215 (242)
Q Consensus       210 l~~~g~  215 (242)
                      +.+.+.
T Consensus       127 VQmPdN  132 (257)
T COG4106         127 VQMPDN  132 (257)
T ss_pred             EECCCc
Confidence            998764

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.36  E-value=1.9e-06  Score=79.53  Aligned_cols=108  Identities=16%  Similarity=0.119  Sum_probs=66.7

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..+..+..        .         ..+|+--|+-. +.-...+.      ...... ..--+..+.
T Consensus       132 g~~ILDIGCG~G~~s~~La~--------~---------g~~V~GID~s~-~~i~~Ar~------~~~~~~-~~~~i~~~~  186 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLAR--------M---------GATVTGVDAVD-KNVKIARL------HADMDP-VTSTIEYLC  186 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHH--------c---------CCEEEEEeCCH-HHHHHHHH------HHHhcC-cccceeEEe
Confidence            46999999999998775541        1         24666666652 11111111      000000 000112233


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      +++.+-.++++++|++++..++||+.+.+.                                 ||+.-++-|+|||++++
T Consensus       187 ~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~---------------------------------~L~~l~r~LkPGG~lii  233 (322)
T PLN02396        187 TTAEKLADEGRKFDAVLSLEVIEHVANPAE---------------------------------FCKSLSALTIPNGATVL  233 (322)
T ss_pred             cCHHHhhhccCCCCEEEEhhHHHhcCCHHH---------------------------------HHHHHHHHcCCCcEEEE
Confidence            455433356789999999999999766333                                 78888888999999999


Q ss_pred             EecccC
Q 043411          211 TFLGRS  216 (242)
Q Consensus       211 ~~~g~~  216 (242)
                      +++.+.
T Consensus       234 st~nr~  239 (322)
T PLN02396        234 STINRT  239 (322)
T ss_pred             EECCcC
Confidence            987654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.34  E-value=2.1e-06  Score=73.69  Aligned_cols=111  Identities=14%  Similarity=0.188  Sum_probs=70.2

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhc-CCCCceeecc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKD-KFGPCFIAGM  129 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~-~~~~~f~~~v  129 (242)
                      ..+|+|+|||+|..+..+....              ++..+++..|+..+ .-...+..      .... ...++  ..+
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~-~~~~a~~~------~~~~~~~~~~--~~~  108 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSEG-MLAVGREK------LRDLGLSGNV--EFV  108 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCHH-HHHHHHHh------hcccccccCe--EEE
Confidence            4799999999999887765322              11467888888531 11111111      0000 00111  123


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+..++++++|++++++++|++++.+.                                 +|+...+-|+|||+++
T Consensus       109 ~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~---------------------------------~l~~~~~~L~~gG~li  155 (239)
T PRK00216        109 QGDAEALPFPDNSFDAVTIAFGLRNVPDIDK---------------------------------ALREMYRVLKPGGRLV  155 (239)
T ss_pred             ecccccCCCCCCCccEEEEecccccCCCHHH---------------------------------HHHHHHHhccCCcEEE
Confidence            3466665567889999999999998655332                                 6777778899999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      +.......
T Consensus       156 ~~~~~~~~  163 (239)
T PRK00216        156 ILEFSKPT  163 (239)
T ss_pred             EEEecCCC
Confidence            87765543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.33  E-value=7e-07  Score=76.60  Aligned_cols=141  Identities=16%  Similarity=0.185  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchH
Q 043411           24 IQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFN  103 (242)
Q Consensus        24 ~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn  103 (242)
                      +|+.+.....|.+-...............+|+|+|||+|..+..+.+..               |..+|+-.|.-. +.-
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~---------------p~~~v~gVD~s~-~~i   77 (202)
T PRK00121         14 GQQRAIEELWPRLSPAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAKAN---------------PDINFIGIEVHE-PGV   77 (202)
T ss_pred             chhhhhcccchhhcCCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHC---------------CCccEEEEEech-HHH
Confidence            4556666666666333222211111246899999999999988775221               235677777652 111


Q ss_pred             HHhhcCchhHHhhhhcCCCCceeecccccc---ccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHH
Q 043411          104 SIFESLPDFYERIKKDKFGPCFIAGMLGSF---YQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVC  180 (242)
Q Consensus       104 ~lf~~l~~~~~~l~~~~~~~~f~~~vpgSF---y~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~  180 (242)
                      ...+.      ........++.  .+-++.   +.+.++++++|.+++.+..+|......     +..            
T Consensus        78 ~~a~~------~~~~~~~~~v~--~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~-----~~~------------  132 (202)
T PRK00121         78 GKALK------KIEEEGLTNLR--LLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHH-----KRR------------  132 (202)
T ss_pred             HHHHH------HHHHcCCCCEE--EEecCHHHHHHHHcCccccceEEEECCCCCCCcccc-----ccc------------
Confidence            11110      01111112322  233454   234578899999999888777543111     000            


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCceEEEEec
Q 043411          181 QAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFL  213 (242)
Q Consensus       181 ~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  213 (242)
                              .+...||+.-++-|+|||++++++.
T Consensus       133 --------~~~~~~l~~i~~~LkpgG~l~i~~~  157 (202)
T PRK00121        133 --------LVQPEFLALYARKLKPGGEIHFATD  157 (202)
T ss_pred             --------cCCHHHHHHHHHHcCCCCEEEEEcC
Confidence                    0123377777888899999999764

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.30  E-value=1e-06  Score=81.14  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=67.0

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|..++.++.        .    +   + -+|+--| |+-.+...++.....   ..  ...++  ..++
T Consensus       123 g~~VLDIGCG~G~~~~~la~--------~----g---~-~~V~GiD-~S~~~l~q~~a~~~~---~~--~~~~i--~~~~  178 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLG--------A----G---A-KLVVGID-PSQLFLCQFEAVRKL---LG--NDQRA--HLLP  178 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHH--------c----C---C-CEEEEEc-CCHHHHHHHHHHHHh---cC--CCCCe--EEEe
Confidence            46999999999999886651        1    1   2 2466677 333333333222110   00  01122  2344


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      +++ +.+-.++++|+++|..++||..+                                 ...+|+.-++-|+|||.+++
T Consensus       179 ~d~-e~lp~~~~FD~V~s~~vl~H~~d---------------------------------p~~~L~~l~~~LkpGG~lvl  224 (322)
T PRK15068        179 LGI-EQLPALKAFDTVFSMGVLYHRRS---------------------------------PLDHLKQLKDQLVPGGELVL  224 (322)
T ss_pred             CCH-HHCCCcCCcCEEEECChhhccCC---------------------------------HHHHHHHHHHhcCCCcEEEE
Confidence            566 34433789999999999988433                                 12277888888999999999


Q ss_pred             EecccCC
Q 043411          211 TFLGRSI  217 (242)
Q Consensus       211 ~~~g~~~  217 (242)
                      ..+..+.
T Consensus       225 ~~~~i~~  231 (322)
T PRK15068        225 ETLVIDG  231 (322)
T ss_pred             EEEEecC
Confidence            8775543

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.30  E-value=1.8e-06  Score=77.88  Aligned_cols=104  Identities=21%  Similarity=0.285  Sum_probs=62.5

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      +-+|+|+|||+|.+++.+.+        .         -.+|+.-|... ..-...+..      ...... +  +..+.
T Consensus       121 ~~~vLDlGcG~G~~~~~la~--------~---------g~~V~avD~s~-~ai~~~~~~------~~~~~l-~--v~~~~  173 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLAL--------L---------GFDVTAVDINQ-QSLENLQEI------AEKENL-N--IRTGL  173 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHH--------C---------CCEEEEEECCH-HHHHHHHHH------HHHcCC-c--eEEEE
Confidence            35999999999999987752        1         14566666642 111111111      111111 1  12223


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      .++-. .-+++++|+|+|..++|+++.                               .++..+|+.-.+-|+|||++++
T Consensus       174 ~D~~~-~~~~~~fD~I~~~~vl~~l~~-------------------------------~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        174 YDINS-ASIQEEYDFILSTVVLMFLNR-------------------------------ERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             echhc-ccccCCccEEEEcchhhhCCH-------------------------------HHHHHHHHHHHHhcCCCcEEEE
Confidence            34422 223789999999999999642                               2445588888889999999776


Q ss_pred             Eec
Q 043411          211 TFL  213 (242)
Q Consensus       211 ~~~  213 (242)
                      ...
T Consensus       222 v~~  224 (287)
T PRK12335        222 VCA  224 (287)
T ss_pred             EEe
Confidence            543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.30  E-value=3.5e-06  Score=68.41  Aligned_cols=108  Identities=17%  Similarity=0.231  Sum_probs=66.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      +..+|+|+|||+|..+..+.+..             . |..+++.-|+-. +.-...+.      ........+  +..+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~-------------~-~~~~i~gvD~s~-~~i~~a~~------~~~~~~~~n--i~~~   59 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKEL-------------N-PGAKIIGVDISE-EMIEYAKK------RAKELGLDN--IEFI   59 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHS-------------T-TTSEEEEEESSH-HHHHHHHH------HHHHTTSTT--EEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhc-------------C-CCCEEEEEECcH-HHHHHhhc------ccccccccc--cceE
Confidence            46899999999999988776311             1 246788888762 11111111      111111122  2223


Q ss_pred             ccccccccC--CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          130 LGSFYQRLF--PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       130 pgSFy~~l~--p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      -+++.+ +-  .++.+|++++..++||+.+..                                 .+|+.-.+-|++||.
T Consensus        60 ~~d~~~-l~~~~~~~~D~I~~~~~l~~~~~~~---------------------------------~~l~~~~~~lk~~G~  105 (152)
T PF13847_consen   60 QGDIED-LPQELEEKFDIIISNGVLHHFPDPE---------------------------------KVLKNIIRLLKPGGI  105 (152)
T ss_dssp             ESBTTC-GCGCSSTTEEEEEEESTGGGTSHHH---------------------------------HHHHHHHHHEEEEEE
T ss_pred             Eeehhc-cccccCCCeeEEEEcCchhhccCHH---------------------------------HHHHHHHHHcCCCcE
Confidence            346644 32  128999999999998855432                                 266677777899999


Q ss_pred             EEEEecc
Q 043411          208 MFLTFLG  214 (242)
Q Consensus       208 lvl~~~g  214 (242)
                      ++++.+.
T Consensus       106 ~i~~~~~  112 (152)
T PF13847_consen  106 LIISDPN  112 (152)
T ss_dssp             EEEEEEE
T ss_pred             EEEEECC
Confidence            9998887

...

>TIGR03438 probable methyltransferase

Probab=98.29  E-value=6.4e-06  Score=74.94  Aligned_cols=131  Identities=15%  Similarity=0.169  Sum_probs=79.9

Q ss_pred             HHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhH
Q 043411           34 PFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFY  113 (242)
Q Consensus        34 ~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~  113 (242)
                      .+|++..+++... .+...+|+|+|||+|..|..+++...+              ..+++--|+.. ++-...+      
T Consensus        48 ~il~~~~~~ia~~-~~~~~~iLELGcGtG~~t~~Ll~~l~~--------------~~~~~~iDiS~-~mL~~a~------  105 (301)
T TIGR03438        48 AILERHADEIAAA-TGAGCELVELGSGSSRKTRLLLDALRQ--------------PARYVPIDISA-DALKESA------  105 (301)
T ss_pred             HHHHHHHHHHHHh-hCCCCeEEecCCCcchhHHHHHHhhcc--------------CCeEEEEECCH-HHHHHHH------
Confidence            4444444444321 133478999999999999988854411              26677778873 2222111      


Q ss_pred             HhhhhcCCCCceeecccccccccc-CCCC----ceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHH
Q 043411          114 ERIKKDKFGPCFIAGMLGSFYQRL-FPSR----GINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQ  188 (242)
Q Consensus       114 ~~l~~~~~~~~f~~~vpgSFy~~l-~p~~----svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~  188 (242)
                      ..+.. ..+.+-+.++-|+|.+.+ +|..    ...++++.+++++++.                               
T Consensus       106 ~~l~~-~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~-------------------------------  153 (301)
T TIGR03438       106 AALAA-DYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTP-------------------------------  153 (301)
T ss_pred             HHHHh-hCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCH-------------------------------
Confidence            11111 112344556777887533 3333    4567777788888652                               


Q ss_pred             HHHHHHHHHHHhhhccCceEEEEecccCCC
Q 043411          189 RDFSAFLSLRSEEIVSGGRMFLTFLGRSIA  218 (242)
Q Consensus       189 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~  218 (242)
                      .|..+||+.-++-|+|||+|++++-...+.
T Consensus       154 ~e~~~~L~~i~~~L~pgG~~lig~d~~~~~  183 (301)
T TIGR03438       154 EEAVAFLRRIRQLLGPGGGLLIGVDLVKDP  183 (301)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEeccCCCCH
Confidence            234458888888999999999987766554

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.29  E-value=7.4e-07  Score=78.53  Aligned_cols=113  Identities=15%  Similarity=0.219  Sum_probs=62.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      +..+|+|+|||+|..|+.+.+.+              .+..+|+--|+.     .-.-...  +..+......++  .-+
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~--------------~~~~~v~~vD~s-----~~ML~~a--~~k~~~~~~~~i--~~v  103 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRV--------------GPNGKVVGVDIS-----PGMLEVA--RKKLKREGLQNI--EFV  103 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGS--------------S---EEEEEES------HHHHHHH--HHHHHHTT--SE--EEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHC--------------CCccEEEEecCC-----HHHHHHH--HHHHHhhCCCCe--eEE
Confidence            46799999999999888775222              134566666665     2111111  122221111222  234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      -++..+--||++|+|.+.+++.+|-+.+.+.                                 .|+.-.+=|||||+++
T Consensus       104 ~~da~~lp~~d~sfD~v~~~fglrn~~d~~~---------------------------------~l~E~~RVLkPGG~l~  150 (233)
T PF01209_consen  104 QGDAEDLPFPDNSFDAVTCSFGLRNFPDRER---------------------------------ALREMYRVLKPGGRLV  150 (233)
T ss_dssp             E-BTTB--S-TT-EEEEEEES-GGG-SSHHH---------------------------------HHHHHHHHEEEEEEEE
T ss_pred             EcCHHHhcCCCCceeEEEHHhhHHhhCCHHH---------------------------------HHHHHHHHcCCCeEEE
Confidence            5577666689999999999999998654222                                 4444555569999999


Q ss_pred             EEecccCCC
Q 043411          210 LTFLGRSIA  218 (242)
Q Consensus       210 l~~~g~~~~  218 (242)
                      +.-++++..
T Consensus       151 ile~~~p~~  159 (233)
T PF01209_consen  151 ILEFSKPRN  159 (233)
T ss_dssp             EEEEEB-SS
T ss_pred             EeeccCCCC
Confidence            999988764

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.28  E-value=9.1e-06  Score=72.75  Aligned_cols=46  Identities=20%  Similarity=0.357  Sum_probs=34.1

Q ss_pred             cccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411          135 QRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLT  211 (242)
Q Consensus       135 ~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~  211 (242)
                      +..+|.+++|+|+|.+++||++. |                              +..++|+.-++-|+|||+|+++
T Consensus       196 ~~~~~~~~fD~I~crnvl~yf~~-~------------------------------~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      196 AESPPLGDFDLIFCRNVLIYFDE-P------------------------------TQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             CCCCccCCCCEEEechhHHhCCH-H------------------------------HHHHHHHHHHHHhCCCeEEEEE
Confidence            33346889999999999999754 1                              1223666667778999999984

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.27  E-value=3.9e-06  Score=71.23  Aligned_cols=108  Identities=10%  Similarity=0.116  Sum_probs=67.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+....             + ...+++.-|+.. ++-...+.      ...  ...++-  .+
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~-------------~-~~~~~~~iD~~~-~~~~~~~~------~~~--~~~~i~--~~   93 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSA-------------P-DRGKVTGVDFSS-EMLEVAKK------KSE--LPLNIE--FI   93 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhc-------------C-CCceEEEEECCH-HHHHHHHH------Hhc--cCCCce--EE
Confidence            46899999999999887665222             1 125677777641 11111111      000  001111  23


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+..++++++|+++++..+|+..+.                                 ..+|+...+.|+|||+++
T Consensus        94 ~~d~~~~~~~~~~~D~i~~~~~~~~~~~~---------------------------------~~~l~~~~~~L~~gG~l~  140 (223)
T TIGR01934        94 QADAEALPFEDNSFDAVTIAFGLRNVTDI---------------------------------QKALREMYRVLKPGGRLV  140 (223)
T ss_pred             ecchhcCCCCCCcEEEEEEeeeeCCcccH---------------------------------HHHHHHHHHHcCCCcEEE
Confidence            35666666788899999999999885432                                 227888888899999999


Q ss_pred             EEeccc
Q 043411          210 LTFLGR  215 (242)
Q Consensus       210 l~~~g~  215 (242)
                      +.....
T Consensus       141 ~~~~~~  146 (223)
T TIGR01934       141 ILEFSK  146 (223)
T ss_pred             EEEecC
Confidence            876643

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK06922 hypothetical protein; Provisional

Probab=98.26  E-value=2.5e-06  Score=84.94  Aligned_cols=116  Identities=15%  Similarity=0.183  Sum_probs=70.3

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..+..+.+..               |..+++--|+.. +.-...+      ....... .++  ..+-
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~---------------P~~kVtGIDIS~-~MLe~Ar------arl~~~g-~~i--e~I~  473 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEET---------------EDKRIYGIDISE-NVIDTLK------KKKQNEG-RSW--NVIK  473 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhC---------------CCCEEEEEECCH-HHHHHHH------HHhhhcC-CCe--EEEE
Confidence            5799999999998766554211               357888888873 1111111      1110000 111  1122


Q ss_pred             ccccc--ccCCCCceeEEEcccceeec-ccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          131 GSFYQ--RLFPSRGINFIHSSYSVHWL-SKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       131 gSFy~--~l~p~~svdl~~Ss~alhWL-s~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      ++...  ..|+++++|++++++++||+ +.+|..     +.-             |.   .+|...+|+.-.+-|+|||+
T Consensus       474 gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~-----g~~-------------f~---~edl~kiLreI~RVLKPGGr  532 (677)
T PRK06922        474 GDAINLSSSFEKESVDTIVYSSILHELFSYIEYE-----GKK-------------FN---HEVIKKGLQSAYEVLKPGGR  532 (677)
T ss_pred             cchHhCccccCCCCEEEEEEchHHHhhhhhcccc-----ccc-------------cc---HHHHHHHHHHHHHHcCCCcE
Confidence            34422  23788999999999999964 556541     100             00   24667788888899999999


Q ss_pred             EEEEe
Q 043411          208 MFLTF  212 (242)
Q Consensus       208 lvl~~  212 (242)
                      +++.-
T Consensus       533 LII~D  537 (677)
T PRK06922        533 IIIRD  537 (677)
T ss_pred             EEEEe
Confidence            99974

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.25  E-value=1e-05  Score=72.20  Aligned_cols=75  Identities=19%  Similarity=0.212  Sum_probs=42.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+...+    ..       . ...+++-.|+..           ..-........+-.|..  
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~----~~-------~-~~~~v~giD~s~-----------~~l~~A~~~~~~~~~~~--  139 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADAL----PE-------I-TTMQLFGLDISK-----------VAIKYAAKRYPQVTFCV--  139 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhc----cc-------c-cCCeEEEECCCH-----------HHHHHHHHhCCCCeEEE--
Confidence            45789999999999888776332    10       0 114677778752           11110110001112322  


Q ss_pred             ccccccccCCCCceeEEEccc
Q 043411          130 LGSFYQRLFPSRGINFIHSSY  150 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~  150 (242)
                       ++..+--|+++++|+++|..
T Consensus       140 -~d~~~lp~~~~sfD~I~~~~  159 (272)
T PRK11088        140 -ASSHRLPFADQSLDAIIRIY  159 (272)
T ss_pred             -eecccCCCcCCceeEEEEec
Confidence             35544457889999999854

>PRK08317 hypothetical protein; Provisional

Probab=98.25  E-value=6.4e-06  Score=70.21  Aligned_cols=108  Identities=18%  Similarity=0.158  Sum_probs=66.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+....              .|..+++--|+..+-... -+..      .......-.|   +
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~~~~~-a~~~------~~~~~~~~~~---~   74 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEAMLAL-AKER------AAGLGPNVEF---V   74 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHHHHHH-HHHH------hhCCCCceEE---E
Confidence            45799999999998877665322              023567777765211111 0000      0000001122   2


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++....++++++|++++..++||+.+.+.                                 +|+...+-|+|||+++
T Consensus        75 ~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~---------------------------------~l~~~~~~L~~gG~l~  121 (241)
T PRK08317         75 RGDADGLPFPDGSFDAVRSDRVLQHLEDPAR---------------------------------ALAEIARVLRPGGRVV  121 (241)
T ss_pred             ecccccCCCCCCCceEEEEechhhccCCHHH---------------------------------HHHHHHHHhcCCcEEE
Confidence            3355444567889999999999998655222                                 6777778889999999


Q ss_pred             EEecc
Q 043411          210 LTFLG  214 (242)
Q Consensus       210 l~~~g  214 (242)
                      +....
T Consensus       122 ~~~~~  126 (241)
T PRK08317        122 VLDTD  126 (241)
T ss_pred             EEecC
Confidence            98753

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.19  E-value=2.4e-06  Score=73.37  Aligned_cols=120  Identities=18%  Similarity=0.217  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcC
Q 043411           30 SKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESL  109 (242)
Q Consensus        30 ~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l  109 (242)
                      ....+.+.+++.      .-++.+++|+|||.|+||+-+.+        +         -+.|..-|....-...+-+ +
T Consensus        16 ~~~hs~v~~a~~------~~~~g~~LDlgcG~GRNalyLA~--------~---------G~~VtAvD~s~~al~~l~~-~   71 (192)
T PF03848_consen   16 TPTHSEVLEAVP------LLKPGKALDLGCGEGRNALYLAS--------Q---------GFDVTAVDISPVALEKLQR-L   71 (192)
T ss_dssp             ----HHHHHHCT------TS-SSEEEEES-TTSHHHHHHHH--------T---------T-EEEEEESSHHHHHHHHH-H
T ss_pred             CCCcHHHHHHHh------hcCCCcEEEcCCCCcHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHH-H
Confidence            344555555543      12468999999999999998862        2         1556655655222211111 1


Q ss_pred             chhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHH
Q 043411          110 PDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQR  189 (242)
Q Consensus       110 ~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~  189 (242)
                      .. ...+      +  +...-.++-+. -+++..|+|+|...+|.|..  +                             
T Consensus        72 a~-~~~l------~--i~~~~~Dl~~~-~~~~~yD~I~st~v~~fL~~--~-----------------------------  110 (192)
T PF03848_consen   72 AE-EEGL------D--IRTRVADLNDF-DFPEEYDFIVSTVVFMFLQR--E-----------------------------  110 (192)
T ss_dssp             HH-HTT-------T--EEEEE-BGCCB-S-TTTEEEEEEESSGGGS-G--G-----------------------------
T ss_pred             Hh-hcCc------e--eEEEEecchhc-cccCCcCEEEEEEEeccCCH--H-----------------------------
Confidence            10 0011      1  22233344233 34578999999999998763  1                             


Q ss_pred             HHHHHHHHHHhhhccCceEEEEecc
Q 043411          190 DFSAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       190 D~~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                      .+..+++.-.+.++|||++++..+-
T Consensus       111 ~~~~i~~~m~~~~~pGG~~li~~~~  135 (192)
T PF03848_consen  111 LRPQIIENMKAATKPGGYNLIVTFM  135 (192)
T ss_dssp             GHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             HHHHHHHHHHhhcCCcEEEEEEEec
Confidence            1223677778889999998885553

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.17  E-value=4.5e-06  Score=71.76  Aligned_cols=106  Identities=16%  Similarity=0.228  Sum_probs=62.2

Q ss_pred             EEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccc
Q 043411           53 NVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGS  132 (242)
Q Consensus        53 ~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgS  132 (242)
                      +|+|+|||+|..+..+.+..               +..+++--|+.. +.-...+.      ......... -+..+.++
T Consensus         2 ~vLDiGcG~G~~~~~la~~~---------------~~~~v~gid~s~-~~~~~a~~------~~~~~gl~~-~i~~~~~d   58 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERH---------------PHLQLHGYTISP-EQAEVGRE------RIRALGLQG-RIRIFYRD   58 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHHH------HHHhcCCCc-ceEEEecc
Confidence            69999999999877654221               235566666631 11111111      110000000 11123335


Q ss_pred             cccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEe
Q 043411          133 FYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTF  212 (242)
Q Consensus       133 Fy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~  212 (242)
                      +.+..+ ++++|+++|..++|++.+                                 +..+|+.-++-|+|||++++..
T Consensus        59 ~~~~~~-~~~fD~I~~~~~l~~~~~---------------------------------~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       59 SAKDPF-PDTYDLVFGFEVIHHIKD---------------------------------KMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             cccCCC-CCCCCEeehHHHHHhCCC---------------------------------HHHHHHHHHHHcCCCCEEEEEE
Confidence            433333 468999999999998543                                 2237888888899999999988


Q ss_pred             ccc
Q 043411          213 LGR  215 (242)
Q Consensus       213 ~g~  215 (242)
                      +..
T Consensus       105 ~~~  107 (224)
T smart00828      105 FIA  107 (224)
T ss_pred             ccc
Confidence            754

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.16  E-value=1.7e-05  Score=71.86  Aligned_cols=112  Identities=13%  Similarity=0.203  Sum_probs=70.4

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ....+|+|+|||+|..++.+.+..               |..+++.-|+|  ..-...+.      ....... .--+..
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~---------------p~~~~~~~D~~--~~~~~a~~------~~~~~gl-~~rv~~  203 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHF---------------PELDSTILNLP--GAIDLVNE------NAAEKGV-ADRMRG  203 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHC---------------CCCEEEEEecH--HHHHHHHH------HHHhCCc-cceEEE
Confidence            345799999999998877665221               45777777887  33222221      1111000 112445


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      ++++|++.-+|+  .|+++.+..+|-..+                               .+-..+|+.-.+-|+|||++
T Consensus       204 ~~~d~~~~~~~~--~D~v~~~~~lh~~~~-------------------------------~~~~~il~~~~~~L~pgG~l  250 (306)
T TIGR02716       204 IAVDIYKESYPE--ADAVLFCRILYSANE-------------------------------QLSTIMCKKAFDAMRSGGRL  250 (306)
T ss_pred             EecCccCCCCCC--CCEEEeEhhhhcCCh-------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence            778998755665  499988888873211                               12233788888899999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++.-+-.++
T Consensus       251 ~i~d~~~~~  259 (306)
T TIGR02716       251 LILDMVIDD  259 (306)
T ss_pred             EEEEeccCC
Confidence            999765443

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.15  E-value=1.1e-05  Score=71.66  Aligned_cols=110  Identities=15%  Similarity=0.184  Sum_probs=64.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ..-+|+|+|||+|..++.+...+           +   +..+|+--|.-. ..-...+.      ........++  ..+
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~-----------g---~~~~v~gvD~s~-~~l~~A~~------~~~~~g~~~v--~~~  133 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRV-----------G---PTGKVIGVDMTP-EMLAKARA------NARKAGYTNV--EFR  133 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh-----------C---CCCEEEEECCCH-HHHHHHHH------HHHHcCCCCE--EEE
Confidence            45799999999998776544221           1   235677777642 11111111      1111111121  223


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++..--+|++++|+++|..++||..+.+.                                 .|+.-.+-|+|||+++
T Consensus       134 ~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~---------------------------------~l~~~~r~LkpGG~l~  180 (272)
T PRK11873        134 LGEIEALPVADNSVDVIISNCVINLSPDKER---------------------------------VFKEAFRVLKPGGRFA  180 (272)
T ss_pred             EcchhhCCCCCCceeEEEEcCcccCCCCHHH---------------------------------HHHHHHHHcCCCcEEE
Confidence            4566444467889999999999998533221                                 4555566679999999


Q ss_pred             EEeccc
Q 043411          210 LTFLGR  215 (242)
Q Consensus       210 l~~~g~  215 (242)
                      ++.+..
T Consensus       181 i~~~~~  186 (272)
T PRK11873        181 ISDVVL  186 (272)
T ss_pred             EEEeec
Confidence            986643

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.14  E-value=3.3e-05  Score=66.56  Aligned_cols=105  Identities=11%  Similarity=0.211  Sum_probs=59.2

Q ss_pred             CcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEE
Q 043411           14 GETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVF   93 (242)
Q Consensus        14 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~   93 (242)
                      |.. |.+....+.. ......++.+.+..+     +..-+|+|+|||+|.++..+.+.+               +..+++
T Consensus        14 g~~-~~~rn~~~~~-~~~~~~~~~~~l~~~-----~~~~~VLDiGCG~G~~~~~L~~~~---------------~~~~v~   71 (204)
T TIGR03587        14 GKE-YIDRNSRQSL-VAAKLAMFARALNRL-----PKIASILELGANIGMNLAALKRLL---------------PFKHIY   71 (204)
T ss_pred             cch-hhhccccHHH-HHHHHHHHHHHHHhc-----CCCCcEEEEecCCCHHHHHHHHhC---------------CCCeEE
Confidence            444 4444433322 233455566555533     345789999999998887665221               235566


Q ss_pred             ecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeec
Q 043411           94 LNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWL  155 (242)
Q Consensus        94 ~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWL  155 (242)
                      --|+-. +.-...+.      .+    .+..+   +.++..+ .++++++|++++..++|++
T Consensus        72 giDiS~-~~l~~A~~------~~----~~~~~---~~~d~~~-~~~~~sfD~V~~~~vL~hl  118 (204)
T TIGR03587        72 GVEINE-YAVEKAKA------YL----PNINI---IQGSLFD-PFKDNFFDLVLTKGVLIHI  118 (204)
T ss_pred             EEECCH-HHHHHHHh------hC----CCCcE---EEeeccC-CCCCCCEEEEEECChhhhC
Confidence            666652 11111111      00    01112   3456655 6789999999999999875

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.14  E-value=2.9e-06  Score=74.90  Aligned_cols=106  Identities=18%  Similarity=0.279  Sum_probs=69.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ....++|+|||-|..+..+...=|                -+++.-|..           ...-++.++...+.+-+.-.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~v----------------ekli~~DtS-----------~~M~~s~~~~qdp~i~~~~~  124 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGV----------------EKLIMMDTS-----------YDMIKSCRDAQDPSIETSYF  124 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcch----------------hheeeeecc-----------hHHHHHhhccCCCceEEEEE
Confidence            467899999999988776653322                344555554           22222222111222222211


Q ss_pred             --ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          130 --LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       130 --pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                        --.|..  |-.+|+|+++|+.++||..++|.                                 .+..+..-|||.|.
T Consensus       125 v~DEE~Ld--f~ens~DLiisSlslHW~NdLPg---------------------------------~m~~ck~~lKPDg~  169 (325)
T KOG2940|consen  125 VGDEEFLD--FKENSVDLIISSLSLHWTNDLPG---------------------------------SMIQCKLALKPDGL  169 (325)
T ss_pred             ecchhccc--ccccchhhhhhhhhhhhhccCch---------------------------------HHHHHHHhcCCCcc
Confidence              112323  78899999999999999999998                                 45567778899999


Q ss_pred             EEEEecccCC
Q 043411          208 MFLTFLGRSI  217 (242)
Q Consensus       208 lvl~~~g~~~  217 (242)
                      ++-+++|-+.
T Consensus       170 FiasmlggdT  179 (325)
T KOG2940|consen  170 FIASMLGGDT  179 (325)
T ss_pred             chhHHhcccc
Confidence            9999988654

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.14  E-value=3.1e-05  Score=66.98  Aligned_cols=111  Identities=14%  Similarity=0.202  Sum_probs=66.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..|..+++..           +   +.-.|+--|+-  +.+    .++            ++  ..+
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~-----------~---~~~~V~aVDi~--~~~----~~~------------~v--~~i   96 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQI-----------G---DKGRVIACDIL--PMD----PIV------------GV--DFL   96 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHc-----------C---CCceEEEEecc--ccc----CCC------------Cc--EEE
Confidence            34689999999999887666322           1   23566767764  211    111            11  123


Q ss_pred             ccccccc--------cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 043411          130 LGSFYQR--------LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEE  201 (242)
Q Consensus       130 pgSFy~~--------l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~E  201 (242)
                      -+++.+.        -++++++|+++|..+.||... |.                   ..... + .......|+.-.+-
T Consensus        97 ~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~-------------------~d~~~-~-~~~~~~~L~~~~~~  154 (209)
T PRK11188         97 QGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA-------------------VDIPR-A-MYLVELALDMCRDV  154 (209)
T ss_pred             ecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH-------------------HHHHH-H-HHHHHHHHHHHHHH
Confidence            4466542        257889999999999999332 11                   00000 0 11134567777777


Q ss_pred             hccCceEEEEecccC
Q 043411          202 IVSGGRMFLTFLGRS  216 (242)
Q Consensus       202 L~pGG~lvl~~~g~~  216 (242)
                      |+|||.+++..+..+
T Consensus       155 LkpGG~~vi~~~~~~  169 (209)
T PRK11188        155 LAPGGSFVVKVFQGE  169 (209)
T ss_pred             cCCCCEEEEEEecCc
Confidence            899999999877653

>TIGR00452 methyltransferase, putative

Probab=98.13  E-value=3.6e-06  Score=77.41  Aligned_cols=107  Identities=15%  Similarity=0.086  Sum_probs=63.6

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|..+..++.        .    +   + -.|+--|... .|-..|+....   ...  ....+.  ..+
T Consensus       122 g~~VLDvGCG~G~~~~~~~~--------~----g---~-~~v~GiDpS~-~ml~q~~~~~~---~~~--~~~~v~--~~~  177 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRMLG--------H----G---A-KSLVGIDPTV-LFLCQFEAVRK---LLD--NDKRAI--LEP  177 (314)
T ss_pred             CCEEEEeccCCcHHHHHHHH--------c----C---C-CEEEEEcCCH-HHHHHHHHHHH---Hhc--cCCCeE--EEE
Confidence            47999999999998765541        1    1   1 2344444321 23222222211   010  011221  234


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      +++ +.+-+..++|+|+|..+++|+.+..                                 .+|+.-++-|+|||.|++
T Consensus       178 ~~i-e~lp~~~~FD~V~s~gvL~H~~dp~---------------------------------~~L~el~r~LkpGG~Lvl  223 (314)
T TIGR00452       178 LGI-EQLHELYAFDTVFSMGVLYHRKSPL---------------------------------EHLKQLKHQLVIKGELVL  223 (314)
T ss_pred             CCH-HHCCCCCCcCEEEEcchhhccCCHH---------------------------------HHHHHHHHhcCCCCEEEE
Confidence            454 4555567899999999999953321                                 178888888999999999


Q ss_pred             Eeccc
Q 043411          211 TFLGR  215 (242)
Q Consensus       211 ~~~g~  215 (242)
                      .++..
T Consensus       224 etl~i  228 (314)
T TIGR00452       224 ETLVI  228 (314)
T ss_pred             EEEEe
Confidence            87754

Known examples to date are restricted to the proteobacteria.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.09  E-value=2.5e-06  Score=64.60  Aligned_cols=100  Identities=22%  Similarity=0.329  Sum_probs=57.1

Q ss_pred             EeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecccccc
Q 043411           54 VADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSF  133 (242)
Q Consensus        54 IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSF  133 (242)
                      |+|+|||+|..+..+.... +           ..|+.+++.-|+-. +.-...+      +.......+-.|   +.+++
T Consensus         1 ILDlgcG~G~~~~~l~~~~-~-----------~~~~~~~~gvD~s~-~~l~~~~------~~~~~~~~~~~~---~~~D~   58 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRF-D-----------AGPSSRVIGVDISP-EMLELAK------KRFSEDGPKVRF---VQADA   58 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----------------SEEEEEES-H-HHHHHHH------HHSHHTTTTSEE---EESCT
T ss_pred             CEEeecCCcHHHHHHHHHh-h-----------hcccceEEEEECCH-HHHHHHH------HhchhcCCceEE---EECCH
Confidence            7999999999999887443 1           11346777777652 1111111      111111112233   33455


Q ss_pred             ccccCCCCceeEEEcccc-eeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          134 YQRLFPSRGINFIHSSYS-VHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       134 y~~l~p~~svdl~~Ss~a-lhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      -+--++.+++|+++++.. +|++++                               +++..+|+.-++-|+|||
T Consensus        59 ~~l~~~~~~~D~v~~~~~~~~~~~~-------------------------------~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   59 RDLPFSDGKFDLVVCSGLSLHHLSP-------------------------------EELEALLRRIARLLRPGG  101 (101)
T ss_dssp             TCHHHHSSSEEEEEE-TTGGGGSSH-------------------------------HHHHHHHHHHHHTEEEEE
T ss_pred             hHCcccCCCeeEEEEcCCccCCCCH-------------------------------HHHHHHHHHHHHHhCCCC
Confidence            333346779999999655 887554                               456669999999999998

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.07  E-value=8.6e-06  Score=75.67  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=65.1

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..++.+.+..               +..+++.-|+.. ++-...+....         ..++  ..+.
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~---------------~~~~VtgVD~S~-~mL~~A~~k~~---------~~~i--~~i~  166 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHV---------------DAKNVTILDQSP-HQLAKAKQKEP---------LKEC--KIIE  166 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHHHhhh---------ccCC--eEEe
Confidence            5799999999999887665221               125677777742 22222221110         0111  1255


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      ++..+.-++++++|+++++.++|++.+..                                 ..|+.-.+-|+|||++++
T Consensus       167 gD~e~lp~~~~sFDvVIs~~~L~~~~d~~---------------------------------~~L~e~~rvLkPGG~LvI  213 (340)
T PLN02490        167 GDAEDLPFPTDYADRYVSAGSIEYWPDPQ---------------------------------RGIKEAYRVLKIGGKACL  213 (340)
T ss_pred             ccHHhCCCCCCceeEEEEcChhhhCCCHH---------------------------------HHHHHHHHhcCCCcEEEE
Confidence            57655557889999999999999744311                                 156666777799999988


Q ss_pred             Eec
Q 043411          211 TFL  213 (242)
Q Consensus       211 ~~~  213 (242)
                      ...
T Consensus       214 i~~  216 (340)
T PLN02490        214 IGP  216 (340)
T ss_pred             EEe
Confidence            643

>PRK06202 hypothetical protein; Provisional

Probab=98.06  E-value=0.00015  Score=62.98  Aligned_cols=86  Identities=14%  Similarity=0.173  Sum_probs=49.9

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      .+..+|+|+|||+|.++..+....    ++.       .+..+++-.|+.. +.-...+....        ..+--+..+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~----~~~-------g~~~~v~gvD~s~-~~l~~a~~~~~--------~~~~~~~~~  118 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWA----RRD-------GLRLEVTAIDPDP-RAVAFARANPR--------RPGVTFRQA  118 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHH----HhC-------CCCcEEEEEcCCH-HHHHHHHhccc--------cCCCeEEEE
Confidence            356899999999999888665332    111       1346888888863 22222221110        001112222


Q ss_pred             cccccccccCCCCceeEEEcccceeeccc
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSK  157 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~  157 (242)
                      ....+   -++++++|+++|+.++||+.+
T Consensus       119 ~~~~l---~~~~~~fD~V~~~~~lhh~~d  144 (232)
T PRK06202        119 VSDEL---VAEGERFDVVTSNHFLHHLDD  144 (232)
T ss_pred             ecccc---cccCCCccEEEECCeeecCCh
Confidence            11111   136789999999999999865

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.05  E-value=1.4e-05  Score=76.66  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=63.6

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCC-ceeecc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGP-CFIAGM  129 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~-~f~~~v  129 (242)
                      ..+|+|+|||+|.+|..+.+..                 .+|+-.|+.     .-+-...  . ... ....+ .|+.  
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~~-----------------~~v~giD~s-----~~~l~~a--~-~~~-~~~~~i~~~~--   89 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKKA-----------------GQVIALDFI-----ESVIKKN--E-SIN-GHYKNVKFMC--   89 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhhC-----------------CEEEEEeCC-----HHHHHHH--H-HHh-ccCCceEEEE--
Confidence            4589999999999998776221                 244555543     2211110  0 010 01112 2322  


Q ss_pred             cccccc--ccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          130 LGSFYQ--RLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       130 pgSFy~--~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                       +++..  .-+|++++|+|++..++||+++                               .++..+|+...+-|+|||+
T Consensus        90 -~d~~~~~~~~~~~~fD~I~~~~~l~~l~~-------------------------------~~~~~~l~~~~r~Lk~gG~  137 (475)
T PLN02336         90 -ADVTSPDLNISDGSVDLIFSNWLLMYLSD-------------------------------KEVENLAERMVKWLKVGGY  137 (475)
T ss_pred             -ecccccccCCCCCCEEEEehhhhHHhCCH-------------------------------HHHHHHHHHHHHhcCCCeE
Confidence             34432  2367899999999999999754                               2334488888888999999


Q ss_pred             EEEEec
Q 043411          208 MFLTFL  213 (242)
Q Consensus       208 lvl~~~  213 (242)
                      |++.-.
T Consensus       138 l~~~d~  143 (475)
T PLN02336        138 IFFRES  143 (475)
T ss_pred             EEEEec
Confidence            998643

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.04  E-value=2e-05  Score=69.17  Aligned_cols=138  Identities=21%  Similarity=0.322  Sum_probs=84.5

Q ss_pred             chHHHhhHH---HHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEE
Q 043411           16 TSYAKNSNI---QRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQV   92 (242)
Q Consensus        16 ~sY~~nS~~---Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv   92 (242)
                      .-|.+||.+   |+...++++.+|.-        ..+++--|+|+|||||-.+-.+-                . +.-++
T Consensus        21 ~kYt~nsri~~IQ~em~eRaLELLal--------p~~~~~~iLDIGCGsGLSg~vL~----------------~-~Gh~w   75 (270)
T KOG1541|consen   21 PKYTQNSRIVLIQAEMAERALELLAL--------PGPKSGLILDIGCGSGLSGSVLS----------------D-SGHQW   75 (270)
T ss_pred             hhccccceeeeehHHHHHHHHHHhhC--------CCCCCcEEEEeccCCCcchheec----------------c-CCceE
Confidence            358888875   66666666654431        12358999999999997654331                1 22555


Q ss_pred             EecCCCCCchHHHhhcCchhHH-hhhhcCCCCceeecccccc-ccccCCCCceeEEEcccceeecccCCCcccCCCCceE
Q 043411           93 FLNDLPGNDFNSIFESLPDFYE-RIKKDKFGPCFIAGMLGSF-YQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIY  170 (242)
Q Consensus        93 ~~nDLp~NDFn~lf~~l~~~~~-~l~~~~~~~~f~~~vpgSF-y~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~  170 (242)
                      +--|..           +.+-+ .+.. ...--++.+   ++ -+--|+++++|=++|-+|+|||=..-....       
T Consensus        76 iGvDiS-----------psML~~a~~~-e~egdlil~---DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~-------  133 (270)
T KOG1541|consen   76 IGVDIS-----------PSMLEQAVER-ELEGDLILC---DMGEGLPFRPGTFDGVISISAVQWLCNADKSLH-------  133 (270)
T ss_pred             EeecCC-----------HHHHHHHHHh-hhhcCeeee---ecCCCCCCCCCccceEEEeeeeeeecccCcccc-------
Confidence            555654           22111 1100 001111111   22 244579999999999999999766544221       


Q ss_pred             EcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411          171 ITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR  215 (242)
Q Consensus       171 ~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  215 (242)
                            .+         ++.+.+|+..-..-|++|++-|+.+.-.
T Consensus       134 ------~P---------~~Rl~~FF~tLy~~l~rg~raV~QfYpe  163 (270)
T KOG1541|consen  134 ------VP---------KKRLLRFFGTLYSCLKRGARAVLQFYPE  163 (270)
T ss_pred             ------Ch---------HHHHHHHhhhhhhhhccCceeEEEeccc
Confidence                  11         3567779988889999999999988644

>PRK05785 hypothetical protein; Provisional

Probab=98.03  E-value=2.9e-05  Score=67.90  Aligned_cols=77  Identities=16%  Similarity=0.200  Sum_probs=48.7

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|.++..+.+..                ..+|+--|+.. +.-.+-+          . +  .-+   +-
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~----------------~~~v~gvD~S~-~Ml~~a~----------~-~--~~~---~~   98 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF----------------KYYVVALDYAE-NMLKMNL----------V-A--DDK---VV   98 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc----------------CCEEEEECCCH-HHHHHHH----------h-c--cce---EE
Confidence            5799999999998887664221                13566666541 1111111          0 0  112   34


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCC
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPE  160 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~  160 (242)
                      +++..--||++|+|+++|++++||+.+.+.
T Consensus        99 ~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~  128 (226)
T PRK05785         99 GSFEALPFRDKSFDVVMSSFALHASDNIEK  128 (226)
T ss_pred             echhhCCCCCCCEEEEEecChhhccCCHHH
Confidence            566555678999999999999999766443

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.99  E-value=2.8e-05  Score=59.73  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=18.2

Q ss_pred             HHHHHHHhhhccCceEEEEec
Q 043411          193 AFLSLRSEEIVSGGRMFLTFL  213 (242)
Q Consensus       193 ~FL~~Ra~EL~pGG~lvl~~~  213 (242)
                      .+++.-.+.|+|||++++++.
T Consensus       103 ~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469       103 EILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             HHHHHHHHHcCCCCEEEEEec
Confidence            588888899999999999864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.95  E-value=2.6e-05  Score=72.50  Aligned_cols=107  Identities=14%  Similarity=0.180  Sum_probs=65.1

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|..++.+.+        +       .|..+|+..|...   ..    +...+..+..+.....   .++
T Consensus       197 ~g~VLDlGCG~G~ls~~la~--------~-------~p~~~v~~vDis~---~A----l~~A~~nl~~n~l~~~---~~~  251 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLAR--------H-------SPKIRLTLSDVSA---AA----LESSRATLAANGLEGE---VFA  251 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHH--------h-------CCCCEEEEEECCH---HH----HHHHHHHHHHcCCCCE---EEE
Confidence            35899999999998776652        1       1457788888752   11    1111111111111111   234


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      ++.+..  .++.+|+|+|.-.+||.-..                            ...+..+|++.-++-|+|||.|++
T Consensus       252 ~D~~~~--~~~~fDlIvsNPPFH~g~~~----------------------------~~~~~~~~i~~a~~~LkpgG~L~i  301 (342)
T PRK09489        252 SNVFSD--IKGRFDMIISNPPFHDGIQT----------------------------SLDAAQTLIRGAVRHLNSGGELRI  301 (342)
T ss_pred             cccccc--cCCCccEEEECCCccCCccc----------------------------cHHHHHHHHHHHHHhcCcCCEEEE
Confidence            455543  36789999999999872110                            013455688888899999999988


Q ss_pred             Ee
Q 043411          211 TF  212 (242)
Q Consensus       211 ~~  212 (242)
                      ..
T Consensus       302 Va  303 (342)
T PRK09489        302 VA  303 (342)
T ss_pred             EE
Confidence            64

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.94  E-value=9e-05  Score=61.72  Aligned_cols=110  Identities=19%  Similarity=0.283  Sum_probs=64.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+..        +       .|...|+..|.-.+=....       +.....+...+  +..+
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~--------~-------~~~~~v~~vDi~~~a~~~a-------~~n~~~n~~~~--v~~~   86 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAK--------R-------GPDAKVTAVDINPDALELA-------KRNAERNGLEN--VEVV   86 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHH--------T-------STCEEEEEEESBHHHHHHH-------HHHHHHTTCTT--EEEE
T ss_pred             cCCeEEEecCChHHHHHHHHH--------h-------CCCCEEEEEcCCHHHHHHH-------HHHHHhcCccc--cccc
Confidence            357899999999999887752        1       1456788888752111111       11111122233  4456


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      ..+.++.+- ++++|+|+|.         |+-..           ...+.        ..-+..|++.-.+-|+|||.|+
T Consensus        87 ~~d~~~~~~-~~~fD~Iv~N---------PP~~~-----------~~~~~--------~~~~~~~i~~a~~~Lk~~G~l~  137 (170)
T PF05175_consen   87 QSDLFEALP-DGKFDLIVSN---------PPFHA-----------GGDDG--------LDLLRDFIEQARRYLKPGGRLF  137 (170)
T ss_dssp             ESSTTTTCC-TTCEEEEEE------------SBT-----------TSHCH--------HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccccccc-ccceeEEEEc---------cchhc-----------ccccc--------hhhHHHHHHHHHHhccCCCEEE
Confidence            678877655 8999999992         33110           01101        1224457777788899999998


Q ss_pred             EEe
Q 043411          210 LTF  212 (242)
Q Consensus       210 l~~  212 (242)
                      +..
T Consensus       138 lv~  140 (170)
T PF05175_consen  138 LVI  140 (170)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            744

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=97.93  E-value=5.4e-05  Score=71.34  Aligned_cols=110  Identities=12%  Similarity=0.127  Sum_probs=63.5

Q ss_pred             cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCC-ceeeccc
Q 043411           52 FNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGP-CFIAGML  130 (242)
Q Consensus        52 ~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~-~f~~~vp  130 (242)
                      .+|+|+|||+|..++.+.        ++       .|..+|+.-|...       ..+...+..+..+.... .-+..+.
T Consensus       230 ~~VLDLGCGtGvi~i~la--------~~-------~P~~~V~~vD~S~-------~Av~~A~~N~~~n~~~~~~~v~~~~  287 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLL--------DK-------NPQAKVVFVDESP-------MAVASSRLNVETNMPEALDRCEFMI  287 (378)
T ss_pred             CeEEEEeccccHHHHHHH--------Hh-------CCCCEEEEEECCH-------HHHHHHHHHHHHcCcccCceEEEEE
Confidence            599999999998877654        22       1568899988862       11111111111111110 0122234


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      ++.+..+ ++.++|+|+|.--+|+...+..                 .           ...++++.-.+-|+|||.|++
T Consensus       288 ~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~-----------------~-----------ia~~l~~~a~~~LkpGG~L~i  338 (378)
T PRK15001        288 NNALSGV-EPFRFNAVLCNPPFHQQHALTD-----------------N-----------VAWEMFHHARRCLKINGELYI  338 (378)
T ss_pred             ccccccC-CCCCEEEEEECcCcccCccCCH-----------------H-----------HHHHHHHHHHHhcccCCEEEE
Confidence            4555543 5678999999877776322111                 1           112356666677899999999


Q ss_pred             Ee
Q 043411          211 TF  212 (242)
Q Consensus       211 ~~  212 (242)
                      ..
T Consensus       339 V~  340 (378)
T PRK15001        339 VA  340 (378)
T ss_pred             EE
Confidence            84

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.92  E-value=6.4e-05  Score=64.84  Aligned_cols=94  Identities=19%  Similarity=0.329  Sum_probs=60.8

Q ss_pred             CCccEEeeecCCCCcchHHHH------------HHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhh
Q 043411           49 PGCFNVADLGCSSGPNTLLVV------------SKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERI  116 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~------------~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l  116 (242)
                      +..-+++|+|||.|.+|..+.            ..+|+.-++++.    ..|.+++..-|+|                  
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp------------------   99 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA----GLPHVEWIQADVP------------------   99 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TT------------------
T ss_pred             cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCC------------------
Confidence            457899999999999999875            223333333321    1123444444444                  


Q ss_pred             hhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHH
Q 043411          117 KKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLS  196 (242)
Q Consensus       117 ~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~  196 (242)
                                    .     ..|++++|+|+-+-.+++|+..                              .|+..++.
T Consensus       100 --------------~-----~~P~~~FDLIV~SEVlYYL~~~------------------------------~~L~~~l~  130 (201)
T PF05401_consen  100 --------------E-----FWPEGRFDLIVLSEVLYYLDDA------------------------------EDLRAALD  130 (201)
T ss_dssp             --------------T--------SS-EEEEEEES-GGGSSSH------------------------------HHHHHHHH
T ss_pred             --------------C-----CCCCCCeeEEEEehHhHcCCCH------------------------------HHHHHHHH
Confidence                          2     2588999999999999998651                              45677888


Q ss_pred             HHHhhhccCceEEEEec
Q 043411          197 LRSEEIVSGGRMFLTFL  213 (242)
Q Consensus       197 ~Ra~EL~pGG~lvl~~~  213 (242)
                      .-.+-|+|||.||+...
T Consensus       131 ~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  131 RLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             HHHHTEEEEEEEEEEEE
T ss_pred             HHHHHhCCCCEEEEEEe
Confidence            88899999999999876

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.89  E-value=2.7e-05  Score=66.19  Aligned_cols=115  Identities=16%  Similarity=0.232  Sum_probs=66.7

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+....               |..+++--|+-. +.-...      ..........++.  .+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~---------------p~~~v~gvD~~~-~~l~~a------~~~~~~~~l~ni~--~i   71 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQN---------------PDKNFLGIEIHT-PIVLAA------NNKANKLGLKNLH--VL   71 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhC---------------CCCCEEEEEeeH-HHHHHH------HHHHHHhCCCCEE--EE
Confidence            34699999999999888665221               345666666642 111111      1111111122332  24


Q ss_pred             ccccc---cccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          130 LGSFY---QRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       130 pgSFy---~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      -++..   ..++|++++|.++..+..+|..+ ..    .|..+.                    ...||+.-++-|+|||
T Consensus        72 ~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~-~h----~~~r~~--------------------~~~~l~~~~r~LkpgG  126 (194)
T TIGR00091        72 CGDANELLDKFFPDGSLSKVFLNFPDPWPKK-RH----NKRRIT--------------------QPHFLKEYANVLKKGG  126 (194)
T ss_pred             ccCHHHHHHhhCCCCceeEEEEECCCcCCCC-Cc----cccccC--------------------CHHHHHHHHHHhCCCC
Confidence            44553   34467789999999988888432 11    011110                    1237878888889999


Q ss_pred             eEEEEec
Q 043411          207 RMFLTFL  213 (242)
Q Consensus       207 ~lvl~~~  213 (242)
                      .+++.+-
T Consensus       127 ~l~~~td  133 (194)
T TIGR00091       127 VIHFKTD  133 (194)
T ss_pred             EEEEEeC
Confidence            9998764

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.84  E-value=0.00015  Score=68.27  Aligned_cols=106  Identities=14%  Similarity=0.205  Sum_probs=64.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.+..                ..+|+--|+...-. ...      ++...     ..-+...
T Consensus       167 ~g~rVLDIGcG~G~~a~~la~~~----------------g~~V~giDlS~~~l-~~A------~~~~~-----~l~v~~~  218 (383)
T PRK11705        167 PGMRVLDIGCGWGGLARYAAEHY----------------GVSVVGVTISAEQQ-KLA------QERCA-----GLPVEIR  218 (383)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHC----------------CCEEEEEeCCHHHH-HHH------HHHhc-----cCeEEEE
Confidence            34699999999999887665211                14566666652100 000      01110     0011222


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++ ..+  ++++|.++|...++|+..                               +++..+++.-.+-|+|||+++
T Consensus       219 ~~D~-~~l--~~~fD~Ivs~~~~ehvg~-------------------------------~~~~~~l~~i~r~LkpGG~lv  264 (383)
T PRK11705        219 LQDY-RDL--NGQFDRIVSVGMFEHVGP-------------------------------KNYRTYFEVVRRCLKPDGLFL  264 (383)
T ss_pred             ECch-hhc--CCCCCEEEEeCchhhCCh-------------------------------HHHHHHHHHHHHHcCCCcEEE
Confidence            3344 333  578999999888877421                               234457777788889999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      +..++.+.
T Consensus       265 l~~i~~~~  272 (383)
T PRK11705        265 LHTIGSNK  272 (383)
T ss_pred             EEEccCCC
Confidence            99988764

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.84  E-value=0.0001  Score=61.60  Aligned_cols=125  Identities=13%  Similarity=0.102  Sum_probs=67.0

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..++.+..        .    +   +  +++..|+-. ++-...+.      .....+   +-+..+.
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~--------~----~---~--~v~~vD~s~-~~~~~a~~------~~~~~~---~~~~~~~   72 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKG--------K----G---K--CILTTDINP-FAVKELRE------NAKLNN---VGLDVVM   72 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHh--------c----C---C--EEEEEECCH-HHHHHHHH------HHHHcC---CceEEEE
Confidence            46899999999998776652        1    1   2  677777751 11111111      111111   1122345


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      +++++.  +.+++|+++|....|.....+..  ++...+-....          ..-...+..||+.-.+-|+|||++++
T Consensus        73 ~d~~~~--~~~~fD~Vi~n~p~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~Lk~gG~~~~  138 (179)
T TIGR00537        73 TDLFKG--VRGKFDVILFNPPYLPLEDDLRR--GDWLDVAIDGG----------KDGRKVIDRFLDELPEILKEGGRVQL  138 (179)
T ss_pred             cccccc--cCCcccEEEECCCCCCCcchhcc--cchhhhhhhcC----------CchHHHHHHHHHhHHHhhCCCCEEEE
Confidence            566553  34589999998777655432221  00000000000          00112245688888888999999999


Q ss_pred             EecccC
Q 043411          211 TFLGRS  216 (242)
Q Consensus       211 ~~~g~~  216 (242)
                      ...+..
T Consensus       139 ~~~~~~  144 (179)
T TIGR00537       139 IQSSLN  144 (179)
T ss_pred             EEeccC
Confidence            876544

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.78  E-value=8.6e-05  Score=62.85  Aligned_cols=75  Identities=13%  Similarity=0.121  Sum_probs=41.5

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..++.+.. .             . +..+|+.-|...+ .-...+.      ........+  +..+.
T Consensus        43 ~~~vLDiGcGtG~~s~~la~-~-------------~-~~~~V~~iD~s~~-~~~~a~~------~~~~~~~~~--i~~i~   98 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAI-A-------------R-PELKLTLLESNHK-KVAFLRE------VKAELGLNN--VEIVN   98 (181)
T ss_pred             CCeEEEecCCCCccHHHHHH-H-------------C-CCCeEEEEeCcHH-HHHHHHH------HHHHhCCCC--eEEEe
Confidence            57999999999999887641 1             0 2356777776532 1111111      111111123  22345


Q ss_pred             cccccccCCCCceeEEEccc
Q 043411          131 GSFYQRLFPSRGINFIHSSY  150 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~  150 (242)
                      ++.. .+.+.+++|+++|..
T Consensus        99 ~d~~-~~~~~~~fD~I~s~~  117 (181)
T TIGR00138        99 GRAE-DFQHEEQFDVITSRA  117 (181)
T ss_pred             cchh-hccccCCccEEEehh
Confidence            5653 345678999999843

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.78  E-value=0.0002  Score=62.54  Aligned_cols=105  Identities=22%  Similarity=0.364  Sum_probs=73.9

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +..-+|+|+|+|+|..+..+++        +       .|..+++.=|||.  .   .....   .        .-.+..
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~--------~-------~P~l~~~v~Dlp~--v---~~~~~---~--------~~rv~~  147 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALAR--------A-------YPNLRATVFDLPE--V---IEQAK---E--------ADRVEF  147 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHH--------H-------STTSEEEEEE-HH--H---HCCHH---H--------TTTEEE
T ss_pred             cCccEEEeccCcchHHHHHHHH--------H-------CCCCcceeeccHh--h---hhccc---c--------cccccc
Confidence            4567899999999988876652        2       1568899999992  1   11111   1        112335


Q ss_pred             cccccccccCCCCceeEEEccccee-ecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC--
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVH-WLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG--  205 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alh-WLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG--  205 (242)
                      +||+|+ .-+|.  .|+++-.+.|| | +   .                            ++-..+|+.-++-|+||  
T Consensus       148 ~~gd~f-~~~P~--~D~~~l~~vLh~~-~---d----------------------------~~~~~iL~~~~~al~pg~~  192 (241)
T PF00891_consen  148 VPGDFF-DPLPV--ADVYLLRHVLHDW-S---D----------------------------EDCVKILRNAAAALKPGKD  192 (241)
T ss_dssp             EES-TT-TCCSS--ESEEEEESSGGGS-----H----------------------------HHHHHHHHHHHHHSEECTT
T ss_pred             ccccHH-hhhcc--ccceeeehhhhhc-c---h----------------------------HHHHHHHHHHHHHhCCCCC
Confidence            899999 66777  99999999997 6 1   1                            34555999999999999  


Q ss_pred             ceEEEEecccCCCC
Q 043411          206 GRMFLTFLGRSIAD  219 (242)
Q Consensus       206 G~lvl~~~g~~~~~  219 (242)
                      |+++|.-.-.++..
T Consensus       193 g~llI~e~~~~~~~  206 (241)
T PF00891_consen  193 GRLLIIEMVLPDDR  206 (241)
T ss_dssp             EEEEEEEEEECSSS
T ss_pred             CeEEEEeeccCCCC
Confidence            99999999877654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.76  E-value=0.00011  Score=62.73  Aligned_cols=103  Identities=19%  Similarity=0.216  Sum_probs=61.2

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..++.+....               +..+|+.-|... +.-...+.      ........+  +..
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~---------------~~~~V~giD~s~-~~l~~A~~------~~~~~~l~~--i~~   99 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIAR---------------PELKVTLVDSLG-KKIAFLRE------VAAELGLKN--VTV   99 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHC---------------CCCeEEEEeCcH-HHHHHHHH------HHHHcCCCC--EEE
Confidence            346899999999999888776311               235677667642 11111111      111111122  333


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.++..+ +-+.+++|++++.. +                                    .++..|++..++-|+|||++
T Consensus       100 ~~~d~~~-~~~~~~fDlV~~~~-~------------------------------------~~~~~~l~~~~~~LkpGG~l  141 (187)
T PRK00107        100 VHGRAEE-FGQEEKFDVVTSRA-V------------------------------------ASLSDLVELCLPLLKPGGRF  141 (187)
T ss_pred             EeccHhh-CCCCCCccEEEEcc-c------------------------------------cCHHHHHHHHHHhcCCCeEE
Confidence            4455533 33467899999832 0                                    12334888888999999999


Q ss_pred             EEEec
Q 043411          209 FLTFL  213 (242)
Q Consensus       209 vl~~~  213 (242)
                      ++...
T Consensus       142 v~~~~  146 (187)
T PRK00107        142 LALKG  146 (187)
T ss_pred             EEEeC
Confidence            98743

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.74  E-value=0.00024  Score=59.75  Aligned_cols=20  Identities=15%  Similarity=0.341  Sum_probs=17.3

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..++.+.
T Consensus        31 ~~~~vLDiG~G~G~~~~~la   50 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAA   50 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHH
Confidence            45799999999999988775

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.74  E-value=0.00012  Score=64.98  Aligned_cols=47  Identities=17%  Similarity=0.289  Sum_probs=35.2

Q ss_pred             cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccC
Q 043411          137 LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRS  216 (242)
Q Consensus       137 l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~  216 (242)
                      +-+++|||+|.++-|+||                                  -|+.+|.+.-.+=|++.|-++....-++
T Consensus        95 ~g~e~SVDlI~~Aqa~HW----------------------------------Fdle~fy~~~~rvLRk~Gg~iavW~Y~d  140 (261)
T KOG3010|consen   95 LGGEESVDLITAAQAVHW----------------------------------FDLERFYKEAYRVLRKDGGLIAVWNYND  140 (261)
T ss_pred             cCCCcceeeehhhhhHHh----------------------------------hchHHHHHHHHHHcCCCCCEEEEEEccC
Confidence            337999999999999999                                  3556677777777788776666555554


Q ss_pred             C
Q 043411          217 I  217 (242)
Q Consensus       217 ~  217 (242)
                      +
T Consensus       141 d  141 (261)
T KOG3010|consen  141 D  141 (261)
T ss_pred             C
Confidence            4

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.73  E-value=8.8e-05  Score=63.52  Aligned_cols=107  Identities=17%  Similarity=0.173  Sum_probs=60.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+.                 ...++..|+...-...       .+.........+  +..+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~-----------------~~~v~~iD~s~~~~~~-------a~~~~~~~~~~~--~~~~   98 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL-----------------GANVTGIDASEENIEV-------AKLHAKKDPLLK--IEYR   98 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc-----------------CCeEEEEeCCHHHHHH-------HHHHHHHcCCCc--eEEE
Confidence            4689999999999877655311                 1236666664211000       011111111001  1112


Q ss_pred             ccccccccCC-CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          130 LGSFYQRLFP-SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       130 pgSFy~~l~p-~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      -+++-+...+ ++++|++++..++|+..+.                                 ..+|+.-.+-|+|||.+
T Consensus        99 ~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~---------------------------------~~~l~~~~~~L~~gG~l  145 (224)
T TIGR01983        99 CTSVEDLAEKGAKSFDVVTCMEVLEHVPDP---------------------------------QAFIRACAQLLKPGGIL  145 (224)
T ss_pred             eCCHHHhhcCCCCCccEEEehhHHHhCCCH---------------------------------HHHHHHHHHhcCCCcEE
Confidence            2344222222 4789999998888874331                                 12677777778999999


Q ss_pred             EEEeccc
Q 043411          209 FLTFLGR  215 (242)
Q Consensus       209 vl~~~g~  215 (242)
                      +++...+
T Consensus       146 ~i~~~~~  152 (224)
T TIGR01983       146 FFSTINR  152 (224)
T ss_pred             EEEecCC
Confidence            9887644

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.70  E-value=0.00011  Score=69.58  Aligned_cols=111  Identities=19%  Similarity=0.255  Sum_probs=65.8

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+++|+|||+|..++.+...               .|+..++--|+-..-...+-+.       .......++.+.  .
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~---------------~P~~~~iGIEI~~~~i~~a~~k-------a~~~gL~NV~~i--~  178 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKN---------------NPNKLFIGIEIHTPSIEQVLKQ-------IELLNLKNLLII--N  178 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHh---------------CCCCCEEEEECCHHHHHHHHHH-------HHHcCCCcEEEE--E
Confidence            468999999999888766522               1456777767652111111111       111222354433  3


Q ss_pred             ccc--ccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          131 GSF--YQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       131 gSF--y~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      ++.  .-..+|++++|.++..+...|..+ +.      .++                    -...||+.-++-|+|||.+
T Consensus       179 ~DA~~ll~~~~~~s~D~I~lnFPdPW~Kk-rH------RRl--------------------v~~~fL~e~~RvLkpGG~l  231 (390)
T PRK14121        179 YDARLLLELLPSNSVEKIFVHFPVPWDKK-PH------RRV--------------------ISEDFLNEALRVLKPGGTL  231 (390)
T ss_pred             CCHHHhhhhCCCCceeEEEEeCCCCcccc-ch------hhc--------------------cHHHHHHHHHHHcCCCcEE
Confidence            333  234689999999999887778211 00      011                    1234788888888999999


Q ss_pred             EEEe
Q 043411          209 FLTF  212 (242)
Q Consensus       209 vl~~  212 (242)
                      .+.+
T Consensus       232 ~l~T  235 (390)
T PRK14121        232 ELRT  235 (390)
T ss_pred             EEEE
Confidence            9854

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.65  E-value=0.00025  Score=50.89  Aligned_cols=102  Identities=23%  Similarity=0.234  Sum_probs=59.4

Q ss_pred             EEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccc
Q 043411           53 NVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGS  132 (242)
Q Consensus        53 ~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgS  132 (242)
                      +|+|+|||.|.++..+.+                .+...++..|+..+-....-+...       .....++-  .+.++
T Consensus         1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~   55 (107)
T cd02440           1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKAAA-------ALLADNVE--VLKGD   55 (107)
T ss_pred             CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHHHh-------cccccceE--EEEcC
Confidence            589999999998776652                123677777775322221111000       00011111  12334


Q ss_pred             cccccC-CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411          133 FYQRLF-PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLT  211 (242)
Q Consensus       133 Fy~~l~-p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~  211 (242)
                      +.+... +++++|+++....++++   +                             .+...+++.-.+-|+|||.++++
T Consensus        56 ~~~~~~~~~~~~d~i~~~~~~~~~---~-----------------------------~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          56 AEELPPEADESFDVIISDPPLHHL---V-----------------------------EDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             hhhhccccCCceEEEEEccceeeh---h-----------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence            444333 67789999998888875   0                             22333666666667999999986

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.64  E-value=0.00036  Score=60.57  Aligned_cols=128  Identities=15%  Similarity=0.197  Sum_probs=66.7

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+....               |..+++..|.-. +.-...+      .........+  +..+
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~---------------~~~~v~~iD~~~-~~~~~a~------~~~~~~~~~~--~~~~  142 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKER---------------PDARVTAVDISP-EALAVAR------KNAARLGLDN--VTFL  142 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHH------HHHHHcCCCe--EEEE
Confidence            34699999999998888775321               235777777642 1111111      1111111112  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeeccc---CCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSK---VPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~---~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      .+++.+ .++++++|++++.--.+..+.   .+..+...         .+..+.. -......++..|++.-.+.|+|||
T Consensus       143 ~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~---------e~~~~~~-~~~~~~~~~~~~i~~~~~~L~~gG  211 (251)
T TIGR03534       143 QSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFH---------EPRLALF-GGEDGLDFYRRIIAQAPRLLKPGG  211 (251)
T ss_pred             ECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhc---------CCHHHHc-CCCcHHHHHHHHHHHHHHhcccCC
Confidence            557655 457889999998432221111   11100000         0000000 011234566779999899999999


Q ss_pred             eEEEEe
Q 043411          207 RMFLTF  212 (242)
Q Consensus       207 ~lvl~~  212 (242)
                      .+++..
T Consensus       212 ~~~~~~  217 (251)
T TIGR03534       212 WLLLEI  217 (251)
T ss_pred             EEEEEE
Confidence            999854

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.64  E-value=0.00037  Score=61.92  Aligned_cols=152  Identities=11%  Similarity=0.209  Sum_probs=84.0

Q ss_pred             hHHHhhHHHHHHHHH--------HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCC
Q 043411           17 SYAKNSNIQRTVMSK--------AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLP   88 (242)
Q Consensus        17 sY~~nS~~Q~~~~~~--------~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~   88 (242)
                      -|.+++..+..+...        -..+|.+...++..-....+.+|+++|||.|...+-+++..             +.+
T Consensus        30 ~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~-------------~n~   96 (264)
T KOG2361|consen   30 KYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTS-------------PNN   96 (264)
T ss_pred             hhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcC-------------CCC
Confidence            355566555554433        35567777776654222223499999999998877666222             334


Q ss_pred             ceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCc
Q 043411           89 EFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRD  168 (242)
Q Consensus        89 ~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~  168 (242)
                      .+.+|..|-..|- -.+.+.-.....     ..-..|+.-.-.+=...-++++|+|++...+.   ||-+|+.       
T Consensus        97 ~l~v~acDfsp~A-i~~vk~~~~~~e-----~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv---LSAi~pe-------  160 (264)
T KOG2361|consen   97 RLKVYACDFSPRA-IELVKKSSGYDE-----SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV---LSAIHPE-------  160 (264)
T ss_pred             CeEEEEcCCChHH-HHHHHhccccch-----hhhcccceeccchhccCCCCcCccceEEEEEE---EeccChH-------
Confidence            5999999876422 222222211100     00122333222222456667888888766433   3444441       


Q ss_pred             eEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCCC
Q 043411          169 IYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIA  218 (242)
Q Consensus       169 i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~  218 (242)
                                           -|.+-+....+=|+|||.|++-=.|+.+.
T Consensus       161 ---------------------k~~~a~~nl~~llKPGG~llfrDYg~~Dl  189 (264)
T KOG2361|consen  161 ---------------------KMQSVIKNLRTLLKPGGSLLFRDYGRYDL  189 (264)
T ss_pred             ---------------------HHHHHHHHHHHHhCCCcEEEEeecccchH
Confidence                                 12223444444559999999998888664

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.63  E-value=0.0006  Score=61.89  Aligned_cols=36  Identities=19%  Similarity=0.273  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411          182 AFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSI  217 (242)
Q Consensus       182 ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~  217 (242)
                      +|..-..+.|..|++.-.+-|+|||+|++-.++...
T Consensus       146 mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         146 MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence            333334466777999999999999999999988766

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.61  E-value=0.00036  Score=63.12  Aligned_cols=124  Identities=18%  Similarity=0.236  Sum_probs=64.2

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      +.+|+|+|||+|..++.+....               |..+++-.|... +.-.+.+      .........+ -+..+.
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~---------------~~~~v~avDis~-~al~~A~------~n~~~~~~~~-~i~~~~  178 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAF---------------PEAEVDAVDISP-DALAVAE------INIERHGLED-RVTLIQ  178 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHH------HHHHHcCCCC-cEEEEE
Confidence            4689999999999888776322               246777777752 1111111      1111111110 122344


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHH----HHHH--HHHHHHHHHHHHHHHhhhcc
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVC----QAFW--EQFQRDFSAFLSLRSEEIVS  204 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~----~ay~--~q~~~D~~~FL~~Ra~EL~p  204 (242)
                      +++++.+ |++++|+++|.         |+-+..+.  +   ...++++.    .|..  +......+.|++.-.+-|+|
T Consensus       179 ~D~~~~~-~~~~fD~Iv~N---------PPy~~~~~--~---~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~  243 (284)
T TIGR03533       179 SDLFAAL-PGRKYDLIVSN---------PPYVDAED--M---ADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE  243 (284)
T ss_pred             Cchhhcc-CCCCccEEEEC---------CCCCCccc--h---hhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC
Confidence            5665543 66789999983         33222100  0   00001110    0000  01123456688888888999


Q ss_pred             CceEEEEe
Q 043411          205 GGRMFLTF  212 (242)
Q Consensus       205 GG~lvl~~  212 (242)
                      ||++++-+
T Consensus       244 gG~l~~e~  251 (284)
T TIGR03533       244 NGVLVVEV  251 (284)
T ss_pred             CCEEEEEE
Confidence            99998754

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.58  E-value=3.5e-05  Score=67.29  Aligned_cols=105  Identities=21%  Similarity=0.304  Sum_probs=58.8

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhh--cCCCCcee
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKK--DKFGPCFI  126 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~--~~~~~~f~  126 (242)
                      +...+.+|.|+|-|+-|-.++..+.              .++     ||.  |.+.-|-.-.  +..+..  .+..++|.
T Consensus        54 ~~~~~alDcGAGIGRVTk~lLl~~f--------------~~V-----DlV--Ep~~~Fl~~a--~~~l~~~~~~v~~~~~  110 (218)
T PF05891_consen   54 PKFNRALDCGAGIGRVTKGLLLPVF--------------DEV-----DLV--EPVEKFLEQA--KEYLGKDNPRVGEFYC  110 (218)
T ss_dssp             ---SEEEEET-TTTHHHHHTCCCC---------------SEE-----EEE--ES-HHHHHHH--HHHTCCGGCCEEEEEE
T ss_pred             CCcceEEecccccchhHHHHHHHhc--------------CEe-----EEe--ccCHHHHHHH--HHHhcccCCCcceEEe
Confidence            3589999999999998875541110              112     222  4444443222  111211  12234554


Q ss_pred             eccccccccccCCC-CceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          127 AGMLGSFYQRLFPS-RGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       127 ~~vpgSFy~~l~p~-~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      .|.     +..-|+ +..|+||.=|++..|++                               .|+..||+++.+.|+||
T Consensus       111 ~gL-----Q~f~P~~~~YDlIW~QW~lghLTD-------------------------------~dlv~fL~RCk~~L~~~  154 (218)
T PF05891_consen  111 VGL-----QDFTPEEGKYDLIWIQWCLGHLTD-------------------------------EDLVAFLKRCKQALKPN  154 (218)
T ss_dssp             S-G-----GG----TT-EEEEEEES-GGGS-H-------------------------------HHHHHHHHHHHHHEEEE
T ss_pred             cCH-----hhccCCCCcEeEEEehHhhccCCH-------------------------------HHHHHHHHHHHHhCcCC
Confidence            442     333465 79999999777777655                               68999999999999999


Q ss_pred             ceEEEEe
Q 043411          206 GRMFLTF  212 (242)
Q Consensus       206 G~lvl~~  212 (242)
                      |++++=-
T Consensus       155 G~IvvKE  161 (218)
T PF05891_consen  155 GVIVVKE  161 (218)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEe
Confidence            9999853

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.54  E-value=0.0003  Score=60.80  Aligned_cols=44  Identities=14%  Similarity=0.297  Sum_probs=33.1

Q ss_pred             CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411          139 PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR  215 (242)
Q Consensus       139 p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  215 (242)
                      +.+.+|+++++..+++..+.                                 ..+|+...+-|+|||+++++..++
T Consensus       111 ~~~~fD~Ii~~~~l~~~~~~---------------------------------~~~l~~~~~~L~~gG~l~v~~~~~  154 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHVPDP---------------------------------ASFVRACAKLVKPGGLVFFSTLNR  154 (233)
T ss_pred             cCCCccEEEEhhHhhccCCH---------------------------------HHHHHHHHHHcCCCcEEEEEecCC
Confidence            56799999998887774321                                 126777777789999999987754

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.51  E-value=0.00068  Score=58.15  Aligned_cols=82  Identities=11%  Similarity=0.109  Sum_probs=43.7

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..|..+.+.+ .             +.-+|+--|.-. +.-...      ++.+...+..+ -+..+.
T Consensus        73 ~~~VLDiG~GsG~~~~~la~~~-~-------------~~g~V~~iD~~~-~~~~~a------~~~l~~~~~~~-~v~~~~  130 (205)
T PRK13944         73 GMKILEVGTGSGYQAAVCAEAI-E-------------RRGKVYTVEIVK-ELAIYA------AQNIERLGYWG-VVEVYH  130 (205)
T ss_pred             CCEEEEECcCccHHHHHHHHhc-C-------------CCCEEEEEeCCH-HHHHHH------HHHHHHcCCCC-cEEEEE
Confidence            4799999999999987765322 1             123566555542 111111      11111111111 112344


Q ss_pred             cccccccCCCCceeEEEcccceee
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHW  154 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhW  154 (242)
                      +++.+-+.+.+++|.+++..++++
T Consensus       131 ~d~~~~~~~~~~fD~Ii~~~~~~~  154 (205)
T PRK13944        131 GDGKRGLEKHAPFDAIIVTAAAST  154 (205)
T ss_pred             CCcccCCccCCCccEEEEccCcch
Confidence            566544445578999999877654

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.47  E-value=0.00016  Score=64.85  Aligned_cols=29  Identities=34%  Similarity=0.586  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411          189 RDFSAFLSLRSEEIVSGGRMFLTFLGRSI  217 (242)
Q Consensus       189 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~  217 (242)
                      +|...||++..+-|+|||+|++++.-|.-
T Consensus       172 ~dp~~~l~~l~~~lkP~G~lfittinrt~  200 (282)
T KOG1270|consen  172 KDPQEFLNCLSALLKPNGRLFITTINRTI  200 (282)
T ss_pred             hCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence            45666999999999999999999998754

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.44  E-value=0.00022  Score=63.17  Aligned_cols=107  Identities=18%  Similarity=0.255  Sum_probs=62.7

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      -.+|+|+|||-|..|..+.        +.    |     ..|+-.|+-. .--.+-        +++... ..+.+-=.+
T Consensus        60 g~~vLDvGCGgG~Lse~mA--------r~----G-----a~VtgiD~se-~~I~~A--------k~ha~e-~gv~i~y~~  112 (243)
T COG2227          60 GLRVLDVGCGGGILSEPLA--------RL----G-----ASVTGIDASE-KPIEVA--------KLHALE-SGVNIDYRQ  112 (243)
T ss_pred             CCeEEEecCCccHhhHHHH--------HC----C-----CeeEEecCCh-HHHHHH--------HHhhhh-ccccccchh
Confidence            5899999999997766554        21    2     7788888862 000000        110000 011100011


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      ..-.+-....+++|+|.|   ++=|.++|.+                              ..|++.+++-+||||.|++
T Consensus       113 ~~~edl~~~~~~FDvV~c---mEVlEHv~dp------------------------------~~~~~~c~~lvkP~G~lf~  159 (243)
T COG2227         113 ATVEDLASAGGQFDVVTC---MEVLEHVPDP------------------------------ESFLRACAKLVKPGGILFL  159 (243)
T ss_pred             hhHHHHHhcCCCccEEEE---hhHHHccCCH------------------------------HHHHHHHHHHcCCCcEEEE
Confidence            122122334489999998   4445555552                              1199999999999999999


Q ss_pred             EecccCC
Q 043411          211 TFLGRSI  217 (242)
Q Consensus       211 ~~~g~~~  217 (242)
                      +++-|.-
T Consensus       160 STinrt~  166 (243)
T COG2227         160 STINRTL  166 (243)
T ss_pred             eccccCH
Confidence            9988643

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=0.00033  Score=63.96  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=64.0

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||-|...+.+.+.               .|..++.+.|.-   +    +.+...+.-+..+...+.  ..+.
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~---------------~p~~~vtmvDvn---~----~Av~~ar~Nl~~N~~~~~--~v~~  214 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKK---------------SPQAKLTLVDVN---A----RAVESARKNLAANGVENT--EVWA  214 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHh---------------CCCCeEEEEecC---H----HHHHHHHHhHHHcCCCcc--EEEE
Confidence            459999999999988877622               257888888875   2    222222222332333332  1223


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      .+-|+.+..  ++|+|+|         .|+-..   |.        ..+..+        -.++++.=++.|++||.|.+
T Consensus       215 s~~~~~v~~--kfd~Iis---------NPPfh~---G~--------~v~~~~--------~~~~i~~A~~~L~~gGeL~i  264 (300)
T COG2813         215 SNLYEPVEG--KFDLIIS---------NPPFHA---GK--------AVVHSL--------AQEIIAAAARHLKPGGELWI  264 (300)
T ss_pred             ecccccccc--cccEEEe---------CCCccC---Cc--------chhHHH--------HHHHHHHHHHhhccCCEEEE
Confidence            356666666  8999999         344211   11        011100        01377777788899999998


Q ss_pred             Eec
Q 043411          211 TFL  213 (242)
Q Consensus       211 ~~~  213 (242)
                      ..-
T Consensus       265 Van  267 (300)
T COG2813         265 VAN  267 (300)
T ss_pred             EEc
Confidence            766

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.41  E-value=0.0019  Score=55.32  Aligned_cols=20  Identities=20%  Similarity=0.267  Sum_probs=16.5

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..|..+.
T Consensus        78 ~~~~VLeiG~GsG~~t~~la   97 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLA   97 (212)
T ss_pred             CCCEEEEECCCccHHHHHHH
Confidence            45899999999999987443

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.41  E-value=0.0028  Score=54.27  Aligned_cols=20  Identities=20%  Similarity=0.501  Sum_probs=16.8

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..+..+.
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~   82 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLA   82 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHH
Confidence            45799999999999887664

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.41  E-value=0.00077  Score=60.15  Aligned_cols=127  Identities=12%  Similarity=0.162  Sum_probs=72.2

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +..-+|+|+|||+|..++.+.+..               +..++..-++-.-......+++..       + .-.-.+..
T Consensus        43 ~~~~~IlDlGaG~G~l~L~la~r~---------------~~a~I~~VEiq~~~a~~A~~nv~l-------n-~l~~ri~v   99 (248)
T COG4123          43 PKKGRILDLGAGNGALGLLLAQRT---------------EKAKIVGVEIQEEAAEMAQRNVAL-------N-PLEERIQV   99 (248)
T ss_pred             ccCCeEEEecCCcCHHHHHHhccC---------------CCCcEEEEEeCHHHHHHHHHHHHh-------C-cchhceeE
Confidence            348999999999999999887442               112333223321111111111110       0 00011112


Q ss_pred             ccccc--ccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          129 MLGSF--YQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       129 vpgSF--y~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      +-.++  +.+-.+..++|+|+|         .|+-...++.      ..+.+..+..+.+..-++..+++.-++=|+|||
T Consensus       100 ~~~Di~~~~~~~~~~~fD~Ii~---------NPPyf~~~~~------~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G  164 (248)
T COG4123         100 IEADIKEFLKALVFASFDLIIC---------NPPYFKQGSR------LNENPLRAIARHEITLDLEDLIRAAAKLLKPGG  164 (248)
T ss_pred             ehhhHHHhhhcccccccCEEEe---------CCCCCCCccc------cCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC
Confidence            22233  133334448899999         4664433222      124455566677777889999999999999999


Q ss_pred             eEEEEec
Q 043411          207 RMFLTFL  213 (242)
Q Consensus       207 ~lvl~~~  213 (242)
                      .+.+...
T Consensus       165 ~l~~V~r  171 (248)
T COG4123         165 RLAFVHR  171 (248)
T ss_pred             EEEEEec
Confidence            9998754

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.39  E-value=0.0011  Score=56.99  Aligned_cols=79  Identities=14%  Similarity=0.086  Sum_probs=42.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..|..+....              .++.+|+-.|.-. +.-..-      +..+......+  +..+
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~--------------~~~g~V~~vD~~~-~~~~~A------~~~~~~~g~~~--v~~~  133 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIV--------------GRDGLVVSIERIP-ELAEKA------ERRLRKLGLDN--VIVI  133 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHh--------------CCCCEEEEEeCCH-HHHHHH------HHHHHHCCCCC--eEEE
Confidence            45799999999999998665322              0235566666541 111111      11111111122  1233


Q ss_pred             ccccccccCCCCceeEEEcccc
Q 043411          130 LGSFYQRLFPSRGINFIHSSYS  151 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~a  151 (242)
                      .++..+-+.+.+.+|++++..+
T Consensus       134 ~~d~~~~~~~~~~fD~Ii~~~~  155 (215)
T TIGR00080       134 VGDGTQGWEPLAPYDRIYVTAA  155 (215)
T ss_pred             ECCcccCCcccCCCCEEEEcCC
Confidence            4566554445578999987543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.34  E-value=0.0019  Score=55.81  Aligned_cols=80  Identities=13%  Similarity=0.090  Sum_probs=43.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..|..+...+ .             +.-.|+--|.-. ++-...+      ..+......+  +..+
T Consensus        76 ~g~~VLdIG~GsG~~t~~la~~~-~-------------~~~~V~~vE~~~-~~~~~a~------~~l~~~g~~~--v~~~  132 (212)
T PRK13942         76 EGMKVLEIGTGSGYHAAVVAEIV-G-------------KSGKVVTIERIP-ELAEKAK------KTLKKLGYDN--VEVI  132 (212)
T ss_pred             CcCEEEEECCcccHHHHHHHHhc-C-------------CCCEEEEEeCCH-HHHHHHH------HHHHHcCCCC--eEEE
Confidence            35799999999999997665322 1             123445444421 2222222      1111111122  2334


Q ss_pred             ccccccccCCCCceeEEEcccce
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSV  152 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~al  152 (242)
                      -++...-..+.+.+|+|++..++
T Consensus       133 ~gd~~~~~~~~~~fD~I~~~~~~  155 (212)
T PRK13942        133 VGDGTLGYEENAPYDRIYVTAAG  155 (212)
T ss_pred             ECCcccCCCcCCCcCEEEECCCc
Confidence            55665555667889999886654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.33  E-value=0.0021  Score=55.83  Aligned_cols=117  Identities=12%  Similarity=0.096  Sum_probs=70.4

Q ss_pred             EEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec-ccc
Q 043411           53 NVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG-MLG  131 (242)
Q Consensus        53 ~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~-vpg  131 (242)
                      +|+|+|||||--+..+.+.+               |.+++.=+|...+-+.++-.-+...  .+. +...++.+-. -+.
T Consensus        28 ~vLEiaSGtGqHa~~FA~~l---------------P~l~WqPSD~~~~~~~sI~a~~~~~--~~~-Nv~~P~~lDv~~~~   89 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQAL---------------PHLTWQPSDPDDNLRPSIRAWIAEA--GLP-NVRPPLALDVSAPP   89 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHC---------------CCCEEcCCCCChHHHhhHHHHHHhc--CCc-ccCCCeEeecCCCC
Confidence            79999999997776665333               5688888999876665554433211  111 1111222211 110


Q ss_pred             cccc--ccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          132 SFYQ--RLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       132 SFy~--~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .=..  -.++.+++|.+++.+.+|-.+-                   +.            -..+++.-++-|++||.|+
T Consensus        90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~-------------------~~------------~~~lf~~a~~~L~~gG~L~  138 (204)
T PF06080_consen   90 WPWELPAPLSPESFDAIFCINMLHISPW-------------------SA------------VEGLFAGAARLLKPGGLLF  138 (204)
T ss_pred             CccccccccCCCCcceeeehhHHHhcCH-------------------HH------------HHHHHHHHHHhCCCCCEEE
Confidence            0001  1126779999999999997432                   11            1226777788999999999


Q ss_pred             EEecccCCC
Q 043411          210 LTFLGRSIA  218 (242)
Q Consensus       210 l~~~g~~~~  218 (242)
                      +--+=..++
T Consensus       139 ~YGPF~~~G  147 (204)
T PF06080_consen  139 LYGPFNRDG  147 (204)
T ss_pred             EeCCcccCC
Confidence            876644444

The function of this family is unknown.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.33  E-value=0.0021  Score=58.89  Aligned_cols=74  Identities=20%  Similarity=0.274  Sum_probs=41.7

Q ss_pred             cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecccc
Q 043411           52 FNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLG  131 (242)
Q Consensus        52 ~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpg  131 (242)
                      .+|+|+|||+|..++.+....               |..+|+..|+-. +.-.+.+.      .....+..+ -+..+-+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~---------------p~~~V~avDis~-~al~~A~~------n~~~~~l~~-~i~~~~~  191 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAF---------------PDAEVDAVDISP-DALAVAEI------NIERHGLED-RVTLIES  191 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHC---------------CCCEEEEEeCCH-HHHHHHHH------HHHHhCCCC-cEEEEEC
Confidence            689999999999888765221               346788778752 11111111      111111111 1223455


Q ss_pred             ccccccCCCCceeEEEcc
Q 043411          132 SFYQRLFPSRGINFIHSS  149 (242)
Q Consensus       132 SFy~~l~p~~svdl~~Ss  149 (242)
                      ++.+.+ |++++|+++|.
T Consensus       192 D~~~~l-~~~~fDlIvsN  208 (307)
T PRK11805        192 DLFAAL-PGRRYDLIVSN  208 (307)
T ss_pred             chhhhC-CCCCccEEEEC
Confidence            765543 66789999984

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.31  E-value=0.0023  Score=55.65  Aligned_cols=119  Identities=12%  Similarity=0.071  Sum_probs=62.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHh--hhh-cCCCCcee
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYER--IKK-DKFGPCFI  126 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~--l~~-~~~~~~f~  126 (242)
                      ...||+|+|||.|.|++.+.+        +         -.+|+--|+...=-..+++...-....  +.. ......-+
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~--------~---------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v   96 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAE--------Q---------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNI   96 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHh--------C---------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCce
Confidence            447999999999999998862        1         155665555422111111110000000  000 00000111


Q ss_pred             eccccccccccC-CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          127 AGMLGSFYQRLF-PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       127 ~~vpgSFy~~l~-p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      ..+-++|++.-. +...+|+++-..++|   .+|+                            .+..++++.-.+-|+||
T Consensus        97 ~~~~~D~~~~~~~~~~~fD~i~D~~~~~---~l~~----------------------------~~R~~~~~~l~~lLkpg  145 (213)
T TIGR03840        97 EIFCGDFFALTAADLGPVDAVYDRAALI---ALPE----------------------------EMRQRYAAHLLALLPPG  145 (213)
T ss_pred             EEEEccCCCCCcccCCCcCEEEechhhc---cCCH----------------------------HHHHHHHHHHHHHcCCC
Confidence            223335544221 134678888877776   3444                            23344677777888999


Q ss_pred             ceEEEEecccC
Q 043411          206 GRMFLTFLGRS  216 (242)
Q Consensus       206 G~lvl~~~g~~  216 (242)
                      |++++.++..+
T Consensus       146 G~~ll~~~~~~  156 (213)
T TIGR03840       146 ARQLLITLDYD  156 (213)
T ss_pred             CeEEEEEEEcC
Confidence            98777766553

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.28  E-value=0.0016  Score=54.73  Aligned_cols=25  Identities=12%  Similarity=0.179  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHhhhccCceEEEEecc
Q 043411          190 DFSAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       190 D~~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                      +...+|+.-.+-|+|||++++..+.
T Consensus       124 ~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438       124 LVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             HHHHHHHHHHHHccCCCEEEEEEcc
Confidence            4566888888899999999997543

>PRK04266 fibrillarin; Provisional

Probab=97.27  E-value=0.0018  Score=56.83  Aligned_cols=20  Identities=30%  Similarity=0.240  Sum_probs=16.9

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..|+.+.
T Consensus        72 ~g~~VlD~G~G~G~~~~~la   91 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSHVS   91 (226)
T ss_pred             CCCEEEEEccCCCHHHHHHH
Confidence            34799999999999988765

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.26  E-value=0.00048  Score=58.26  Aligned_cols=20  Identities=15%  Similarity=0.434  Sum_probs=17.8

Q ss_pred             CCCCceeEEEcccceeeccc
Q 043411          138 FPSRGINFIHSSYSVHWLSK  157 (242)
Q Consensus       138 ~p~~svdl~~Ss~alhWLs~  157 (242)
                      ++++++|+++++.++||+.+
T Consensus        71 ~~~~sfD~Vi~~~~l~~~~d   90 (194)
T TIGR02081        71 FPDKSFDYVILSQTLQATRN   90 (194)
T ss_pred             cCCCCcCEEEEhhHhHcCcC
Confidence            57889999999999999865

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.26  E-value=0.0005  Score=66.54  Aligned_cols=107  Identities=20%  Similarity=0.299  Sum_probs=60.1

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ...-+++|+|||+|..+..+++        +      .-..+.+-.+|--  .+.-.|..-..         .+..+  +
T Consensus       116 g~iR~~LDvGcG~aSF~a~l~~--------r------~V~t~s~a~~d~~--~~qvqfaleRG---------vpa~~--~  168 (506)
T PF03141_consen  116 GGIRTALDVGCGVASFGAYLLE--------R------NVTTMSFAPNDEH--EAQVQFALERG---------VPAMI--G  168 (506)
T ss_pred             CceEEEEeccceeehhHHHHhh--------C------CceEEEcccccCC--chhhhhhhhcC---------cchhh--h
Confidence            3567789999999998877662        1      1112333333332  11111221110         01111  2


Q ss_pred             cccccccccCCCCceeEEEccccee-ecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVH-WLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alh-WLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      +-|+- +-.||++++|++||+-|+- |-+.        .| +|.                 -|+.+.|       +|||+
T Consensus       169 ~~~s~-rLPfp~~~fDmvHcsrc~i~W~~~--------~g-~~l-----------------~evdRvL-------RpGGy  214 (506)
T PF03141_consen  169 VLGSQ-RLPFPSNAFDMVHCSRCLIPWHPN--------DG-FLL-----------------FEVDRVL-------RPGGY  214 (506)
T ss_pred             hhccc-cccCCccchhhhhcccccccchhc--------cc-cee-----------------ehhhhhh-------ccCce
Confidence            33333 5567999999999999875 7443        12 221                 2334455       99999


Q ss_pred             EEEEecccC
Q 043411          208 MFLTFLGRS  216 (242)
Q Consensus       208 lvl~~~g~~  216 (242)
                      ++++..-..
T Consensus       215 fv~S~ppv~  223 (506)
T PF03141_consen  215 FVLSGPPVY  223 (506)
T ss_pred             EEecCCccc
Confidence            999877554

; GO: 0008168 methyltransferase activity

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.26  E-value=0.0013  Score=59.34  Aligned_cols=29  Identities=24%  Similarity=0.453  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411          189 RDFSAFLSLRSEEIVSGGRMFLTFLGRSI  217 (242)
Q Consensus       189 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~  217 (242)
                      +++..|++.-++-|+|||++++-.++..+
T Consensus       143 ~~~~~~f~~~~~~LkpgG~~~lq~i~~~~  171 (273)
T PF02353_consen  143 KNYPAFFRKISRLLKPGGRLVLQTITHRD  171 (273)
T ss_dssp             GGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred             hHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence            35566999999999999999998887654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.25  E-value=0.0015  Score=58.76  Aligned_cols=127  Identities=16%  Similarity=0.272  Sum_probs=63.1

Q ss_pred             cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecccc
Q 043411           52 FNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLG  131 (242)
Q Consensus        52 ~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpg  131 (242)
                      .+|+|+|||+|..++.+....               +..+++..|.-. +--.+.+      .........+ -+..+.+
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~---------------~~~~v~avDis~-~al~~a~------~n~~~~~~~~-~v~~~~~  172 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEF---------------PNAEVIAVDISP-DALAVAE------ENAEKNQLEH-RVEFIQS  172 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHH------HHHHHcCCCC-cEEEEEC
Confidence            689999999998888765321               246788888742 1111111      0111111111 1223445


Q ss_pred             ccccccCCCCceeEEEcccceeecccCCCcccCCCCc-e-EEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          132 SFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRD-I-YITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       132 SFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~-i-~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      ++++. ++.+.+|+++|.         |+-+..+.-. . -+..-.|..+... -.-...+.+.+++.-.+-|+|||+|+
T Consensus       173 d~~~~-~~~~~fDlIvsN---------PPyi~~~~~~~~~~~~~~eP~~AL~g-g~dgl~~~~~ii~~a~~~L~~gG~l~  241 (284)
T TIGR00536       173 NLFEP-LAGQKIDIIVSN---------PPYIDEEDLADLPNVVRFEPLLALVG-GDDGLNILRQIIELAPDYLKPNGFLV  241 (284)
T ss_pred             chhcc-CcCCCccEEEEC---------CCCCCcchhhcCCcccccCcHHHhcC-CCcHHHHHHHHHHHHHHhccCCCEEE
Confidence            76654 355589999993         3222110000 0 0000001000000 01123456668888888899999998


Q ss_pred             EEe
Q 043411          210 LTF  212 (242)
Q Consensus       210 l~~  212 (242)
                      +-.
T Consensus       242 ~e~  244 (284)
T TIGR00536       242 CEI  244 (284)
T ss_pred             EEE
Confidence            754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PLN03075 nicotianamine synthase; Provisional

Probab=97.23  E-value=0.0028  Score=57.93  Aligned_cols=110  Identities=15%  Similarity=0.134  Sum_probs=60.7

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      .+-+|+|+|||.|+.|..++..-             -.|.-++.--|... +-+.+-+.+..-...+   ...-.|..+ 
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~-------------~~p~~~~~giD~d~-~ai~~Ar~~~~~~~gL---~~rV~F~~~-  184 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKH-------------HLPTTSFHNFDIDP-SANDVARRLVSSDPDL---SKRMFFHTA-  184 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHh-------------cCCCCEEEEEeCCH-HHHHHHHHHhhhccCc---cCCcEEEEC-
Confidence            57899999999998877655211             11334555555542 2222222221100011   011233333 


Q ss_pred             ccccccccC-CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          130 LGSFYQRLF-PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       130 pgSFy~~l~-p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                        +-.+ +. +.+.+|++++. ++|-+++.+.                               ...|+.-++-|+|||.+
T Consensus       185 --Da~~-~~~~l~~FDlVF~~-ALi~~dk~~k-------------------------------~~vL~~l~~~LkPGG~L  229 (296)
T PLN03075        185 --DVMD-VTESLKEYDVVFLA-ALVGMDKEEK-------------------------------VKVIEHLGKHMAPGALL  229 (296)
T ss_pred             --chhh-cccccCCcCEEEEe-cccccccccH-------------------------------HHHHHHHHHhcCCCcEE
Confidence              2212 23 24789999999 6665433211                               12677778889999999


Q ss_pred             EEEe
Q 043411          209 FLTF  212 (242)
Q Consensus       209 vl~~  212 (242)
                      ++..
T Consensus       230 vlr~  233 (296)
T PLN03075        230 MLRS  233 (296)
T ss_pred             EEec
Confidence            9987

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=97.22  E-value=0.0019  Score=61.73  Aligned_cols=123  Identities=19%  Similarity=0.207  Sum_probs=63.2

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..++.+....               |..+++..|+.. +.-.+.+      .......   .-+..+-
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~---------------p~a~VtAVDiS~-~ALe~Ar------eNa~~~g---~rV~fi~  306 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALER---------------PDAFVRASDISP-PALETAR------KNAADLG---ARVEFAH  306 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhC---------------CCCEEEEEECCH-HHHHHHH------HHHHHcC---CcEEEEE
Confidence            3589999999999988765211               346777777741 1111111      1111111   1223355


Q ss_pred             cccccccCC-CCceeEEEcccceeecccCCCcccCCCCceEE--cCCCChHHHHHHH--HHHHHHHHHHHHHHHhhhccC
Q 043411          131 GSFYQRLFP-SRGINFIHSSYSVHWLSKVPENLENNKRDIYI--TKSSPPSVCQAFW--EQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       131 gSFy~~l~p-~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~--~~~s~~~v~~ay~--~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      +++.+..+| .+++|+++|.         |+-+...+....-  .+-.|.   .|..  +.....++++++.-.+-|+||
T Consensus       307 gDl~e~~l~~~~~FDLIVSN---------PPYI~~~e~~l~~~~v~~EP~---~AL~gG~dGL~~yr~Ii~~a~~~Lkpg  374 (423)
T PRK14966        307 GSWFDTDMPSEGKWDIIVSN---------PPYIENGDKHLLQGDLRFEPQ---IALTDFSDGLSCIRTLAQGAPDRLAEG  374 (423)
T ss_pred             cchhccccccCCCccEEEEC---------CCCCCcchhhhcchhhhcCHH---HHhhCCCchHHHHHHHHHHHHHhcCCC
Confidence            677665554 4689999993         4332211100000  000010   1111  012233556887777889999


Q ss_pred             ceEEE
Q 043411          206 GRMFL  210 (242)
Q Consensus       206 G~lvl  210 (242)
                      |++++
T Consensus       375 G~lil  379 (423)
T PRK14966        375 GFLLL  379 (423)
T ss_pred             cEEEE
Confidence            99875

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.21  E-value=0.0045  Score=57.56  Aligned_cols=143  Identities=19%  Similarity=0.280  Sum_probs=92.0

Q ss_pred             ccCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCC
Q 043411            9 MNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLP   88 (242)
Q Consensus         9 M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~   88 (242)
                      |.||-+..+|.-+-.+|+..-. ...++.+.+.+.+.. +...-..+|.|-|.|..+-.+++..               |
T Consensus       138 ~l~~~~~~~~~~~~~~~~sm~~-l~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll~~f---------------p  200 (342)
T KOG3178|consen  138 MLGGYGGADERFSKDFNGSMSF-LSTLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLLSKY---------------P  200 (342)
T ss_pred             hhhhhcccccccHHHHHHHHHH-HHHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHHHhC---------------C
Confidence            5677676666555556555432 333333333333332 3457889999999999888776422               3


Q ss_pred             ceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCc
Q 043411           89 EFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRD  168 (242)
Q Consensus        89 ~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~  168 (242)
                      .+..+==|||     .+.+.-+.+.       ++   +.-+.|+++.. .|.+-  +||--|.||=+.+           
T Consensus       201 ~ik~infdlp-----~v~~~a~~~~-------~g---V~~v~gdmfq~-~P~~d--aI~mkWiLhdwtD-----------  251 (342)
T KOG3178|consen  201 HIKGINFDLP-----FVLAAAPYLA-------PG---VEHVAGDMFQD-TPKGD--AIWMKWILHDWTD-----------  251 (342)
T ss_pred             CCceeecCHH-----HHHhhhhhhc-------CC---cceeccccccc-CCCcC--eEEEEeecccCCh-----------
Confidence            4666644555     2222222110       01   33478899988 88875  9999888873222           


Q ss_pred             eEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411          169 IYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSI  217 (242)
Q Consensus       169 i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~  217 (242)
                                          +|+..||+++.+-|.|||.+++.-.-.++
T Consensus       252 --------------------edcvkiLknC~~sL~~~GkIiv~E~V~p~  280 (342)
T KOG3178|consen  252 --------------------EDCVKILKNCKKSLPPGGKIIVVENVTPE  280 (342)
T ss_pred             --------------------HHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence                                68888999999999999999998884443

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.20  E-value=0.0045  Score=53.19  Aligned_cols=51  Identities=16%  Similarity=0.110  Sum_probs=28.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 043411           18 YAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        18 Y~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~   69 (242)
                      |+.-..++..+..-..++.+..+..+.. ......+|+|+|||+|..+..+.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la   74 (219)
T TIGR02021        24 GDPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELA   74 (219)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHH
Confidence            4444444444433333444444433321 12346899999999998877664

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.18  E-value=0.0011  Score=57.78  Aligned_cols=92  Identities=15%  Similarity=0.225  Sum_probs=50.9

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCC-CchHHHhhcCchhHHhhhhcCCCCceee
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPG-NDFNSIFESLPDFYERIKKDKFGPCFIA  127 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~-NDFn~lf~~l~~~~~~l~~~~~~~~f~~  127 (242)
                      |+..+|||+|||.+..+..+        .          ....|+-=||.. ||                       +| 
T Consensus        71 ~~~~viaD~GCGdA~la~~~--------~----------~~~~V~SfDLva~n~-----------------------~V-  108 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAV--------P----------NKHKVHSFDLVAPNP-----------------------RV-  108 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH--------------------S---EEEEESS-SST-----------------------TE-
T ss_pred             CCCEEEEECCCchHHHHHhc--------c----------cCceEEEeeccCCCC-----------------------CE-
Confidence            56789999999999876221        1          124555556652 11                       11 


Q ss_pred             ccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          128 GMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       128 ~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                       +.-+.-.--++++|+|+++-+-||+=                                  .||..||+.-.+=|+|||.
T Consensus       109 -tacdia~vPL~~~svDv~VfcLSLMG----------------------------------Tn~~~fi~EA~RvLK~~G~  153 (219)
T PF05148_consen  109 -TACDIANVPLEDESVDVAVFCLSLMG----------------------------------TNWPDFIREANRVLKPGGI  153 (219)
T ss_dssp             -EES-TTS-S--TT-EEEEEEES---S----------------------------------S-HHHHHHHHHHHEEEEEE
T ss_pred             -EEecCccCcCCCCceeEEEEEhhhhC----------------------------------CCcHHHHHHHHheeccCcE
Confidence             11233233458999999998776653                                  3677799888899999999


Q ss_pred             EEEEecccCC
Q 043411          208 MFLTFLGRSI  217 (242)
Q Consensus       208 lvl~~~g~~~  217 (242)
                      |.+......=
T Consensus       154 L~IAEV~SRf  163 (219)
T PF05148_consen  154 LKIAEVKSRF  163 (219)
T ss_dssp             EEEEEEGGG-
T ss_pred             EEEEEecccC
Confidence            9999876543

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.16  E-value=0.0022  Score=61.09  Aligned_cols=127  Identities=13%  Similarity=0.125  Sum_probs=65.8

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|.-|+.+.+..               +...|+-.|+-.. .-...      +...........   .+.
T Consensus       245 g~~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~s~~-~l~~~------~~n~~~~g~~~~---~~~  299 (427)
T PRK10901        245 GERVLDACAAPGGKTAHILELA---------------PQAQVVALDIDAQ-RLERV------RENLQRLGLKAT---VIV  299 (427)
T ss_pred             CCEEEEeCCCCChHHHHHHHHc---------------CCCEEEEEeCCHH-HHHHH------HHHHHHcCCCeE---EEE
Confidence            4689999999999998776322               1256777777521 11111      111111111111   233


Q ss_pred             ccccc--ccCCCCceeEEEc---ccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          131 GSFYQ--RLFPSRGINFIHS---SYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       131 gSFy~--~l~p~~svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      ++..+  ..++++++|.+++   ++...-+.+-|..       -|.   ..++-    ...+......+|..-.+-|+||
T Consensus       300 ~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~-------~~~---~~~~~----l~~l~~~q~~iL~~a~~~LkpG  365 (427)
T PRK10901        300 GDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDI-------KWL---RRPED----IAALAALQSEILDALWPLLKPG  365 (427)
T ss_pred             cCcccchhhcccCCCCEEEECCCCCcccccccCccc-------ccc---CCHHH----HHHHHHHHHHHHHHHHHhcCCC
Confidence            34422  2245678999985   1111111222221       010   01111    1223344556888888899999


Q ss_pred             ceEEEEecccC
Q 043411          206 GRMFLTFLGRS  216 (242)
Q Consensus       206 G~lvl~~~g~~  216 (242)
                      |+|+.+++.-.
T Consensus       366 G~lvystcs~~  376 (427)
T PRK10901        366 GTLLYATCSIL  376 (427)
T ss_pred             CEEEEEeCCCC
Confidence            99999887543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.13  E-value=0.0017  Score=57.27  Aligned_cols=128  Identities=15%  Similarity=0.223  Sum_probs=62.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+....               |..+++..|.... .-...+.      ........+  +..+
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~---------------~~~~v~~iDis~~-~l~~a~~------n~~~~~~~~--i~~~  163 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKER---------------PDAEVTAVDISPE-ALAVARR------NAKHGLGAR--VEFL  163 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHC---------------CCCEEEEEECCHH-HHHHHHH------HHHhCCCCc--EEEE
Confidence            35789999999999887665322               2467888887521 1111111      010000011  1123


Q ss_pred             ccccccccCCCCceeEEEcccce---eecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSV---HWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~al---hWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      .++++.. ++++++|+++|.--.   .-...++..+...+-..-...  .        .....++..|++.-.+-|+|||
T Consensus       164 ~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~--g--------~~g~~~~~~~~~~~~~~Lk~gG  232 (275)
T PRK09328        164 QGDWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFG--G--------EDGLDFYRRIIEQAPRYLKPGG  232 (275)
T ss_pred             EccccCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcC--C--------CCHHHHHHHHHHHHHHhcccCC
Confidence            3455443 346799999983100   000001111100000000000  0        1123456668888888899999


Q ss_pred             eEEEEe
Q 043411          207 RMFLTF  212 (242)
Q Consensus       207 ~lvl~~  212 (242)
                      ++++..
T Consensus       233 ~l~~e~  238 (275)
T PRK09328        233 WLLLEI  238 (275)
T ss_pred             EEEEEE
Confidence            999843

>PHA03411 putative methyltransferase; Provisional

Probab=97.10  E-value=0.0026  Score=57.63  Aligned_cols=118  Identities=13%  Similarity=0.116  Sum_probs=68.8

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..++.+....               +..+|+..|+-. ++-.+.+..      +     ++  +..+.
T Consensus        65 ~grVLDLGcGsGilsl~la~r~---------------~~~~V~gVDisp-~al~~Ar~n------~-----~~--v~~v~  115 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRC---------------KPEKIVCVELNP-EFARIGKRL------L-----PE--AEWIT  115 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhC---------------CCCEEEEEECCH-HHHHHHHHh------C-----cC--CEEEE
Confidence            4689999999998777554110               125777778753 222222211      0     11  11244


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHH----HHH--HHHHHHHHHHhhhcc
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQ----FQR--DFSAFLSLRSEEIVS  204 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q----~~~--D~~~FL~~Ra~EL~p  204 (242)
                      +++.+ +.+..++|+|+|.-..+++.....                   .+.|+.+    ..+  .+..||+..+.=|+|
T Consensus       116 ~D~~e-~~~~~kFDlIIsNPPF~~l~~~d~-------------------~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p  175 (279)
T PHA03411        116 SDVFE-FESNEKFDVVISNPPFGKINTTDT-------------------KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP  175 (279)
T ss_pred             Cchhh-hcccCCCcEEEEcCCccccCchhh-------------------hhhhhhccCccccccccHHHHHhhhHheecC
Confidence            56643 335678999999877777532111                   0111110    001  145688888889999


Q ss_pred             CceEEEEecccCC
Q 043411          205 GGRMFLTFLGRSI  217 (242)
Q Consensus       205 GG~lvl~~~g~~~  217 (242)
                      +|...+..-|++-
T Consensus       176 ~G~~~~~yss~~~  188 (279)
T PHA03411        176 TGSAGFAYSGRPY  188 (279)
T ss_pred             CceEEEEEecccc
Confidence            9988888666543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.09  E-value=0.0019  Score=63.09  Aligned_cols=129  Identities=17%  Similarity=0.205  Sum_probs=64.6

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..++.++...               |..+++.-|+.. +.-.+.+.-      ........ .+..+-
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~---------------p~~~v~avDis~-~al~~A~~N------~~~~~l~~-~v~~~~  195 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCEL---------------PNANVIATDISL-DAIEVAKSN------AIKYEVTD-RIQIIH  195 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHC---------------CCCeEEEEECCH-HHHHHHHHH------HHHcCCcc-ceeeee
Confidence            4689999999999988765322               346788888852 222222211      11111000 122345


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHH-HHHHHHHHHHHHHHHhhhccCceEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFW-EQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~-~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      +++++. ++.+++|+++|.--....+..+....+    +  ..-.|.  .+-+. ......++.+++.-.+-|+|||+++
T Consensus       196 ~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~----v--~~~EP~--~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~  266 (506)
T PRK01544        196 SNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIE----T--INYEPS--IALFAEEDGLQAYFIIAENAKQFLKPNGKII  266 (506)
T ss_pred             cchhhh-CcCCCccEEEECCCCCCchhhhhcCch----h--hccCcH--HHhcCCccHHHHHHHHHHHHHHhccCCCEEE
Confidence            576554 356789999994221111111100000    0  000000  00000 1122345558888788899999998


Q ss_pred             EE
Q 043411          210 LT  211 (242)
Q Consensus       210 l~  211 (242)
                      +-
T Consensus       267 lE  268 (506)
T PRK01544        267 LE  268 (506)
T ss_pred             EE
Confidence            74

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.09  E-value=0.0046  Score=58.92  Aligned_cols=130  Identities=13%  Similarity=0.126  Sum_probs=69.5

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|.-|+.+.+.+               +.-+|+-.|.-.+=...+-+.       +...... +-+..+.
T Consensus       239 g~~VLDlcag~G~kt~~la~~~---------------~~~~v~a~D~~~~~l~~~~~n-------~~r~g~~-~~v~~~~  295 (426)
T TIGR00563       239 EETILDACAAPGGKTTHILELA---------------PQAQVVALDIHEHRLKRVYEN-------LKRLGLT-IKAETKD  295 (426)
T ss_pred             CCeEEEeCCCccHHHHHHHHHc---------------CCCeEEEEeCCHHHHHHHHHH-------HHHcCCC-eEEEEec
Confidence            4799999999999999776322               125677777752111111111       1111111 2222233


Q ss_pred             ccccccc--CCCCceeEEEc---ccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          131 GSFYQRL--FPSRGINFIHS---SYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       131 gSFy~~l--~p~~svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      ++...-.  .+.+++|.++.   +++..-+.+.|...       |.  .++..+     .+..+.-..+|..=++-|+||
T Consensus       296 ~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~-------~~--~~~~~~-----~~l~~lQ~~lL~~a~~~Lkpg  361 (426)
T TIGR00563       296 GDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIK-------WL--RKPRDI-----AELAELQSEILDAIWPLLKTG  361 (426)
T ss_pred             cccccccccccccccCEEEEcCCCCCCcccccCcchh-------hc--CCHHHH-----HHHHHHHHHHHHHHHHhcCCC
Confidence            3332212  25678999986   23333344444421       10  112222     122223345787778889999


Q ss_pred             ceEEEEecccCC
Q 043411          206 GRMFLTFLGRSI  217 (242)
Q Consensus       206 G~lvl~~~g~~~  217 (242)
                      |+|+.+++.-..
T Consensus       362 G~lvystcs~~~  373 (426)
T TIGR00563       362 GTLVYATCSVLP  373 (426)
T ss_pred             cEEEEEeCCCCh
Confidence            999999887643

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.04  E-value=0.0016  Score=58.94  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=17.3

Q ss_pred             HHHHHHhhhccCceEEEEecccC
Q 043411          194 FLSLRSEEIVSGGRMFLTFLGRS  216 (242)
Q Consensus       194 FL~~Ra~EL~pGG~lvl~~~g~~  216 (242)
                      ++..-.+-|+|||+++++.+...
T Consensus       241 ll~~~~~~LkpgG~li~sgi~~~  263 (288)
T TIGR00406       241 LYPQFSRLVKPGGWLILSGILET  263 (288)
T ss_pred             HHHHHHHHcCCCcEEEEEeCcHh
Confidence            55555667799999999877643

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PTZ00146 fibrillarin; Provisional

Probab=97.00  E-value=0.01  Score=54.27  Aligned_cols=20  Identities=30%  Similarity=0.267  Sum_probs=17.1

Q ss_pred             ccEEeeecCCCCcchHHHHH
Q 043411           51 CFNVADLGCSSGPNTLLVVS   70 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~   70 (242)
                      -.+|+|+|||+|..|..+..
T Consensus       133 G~~VLDLGaG~G~~t~~lAd  152 (293)
T PTZ00146        133 GSKVLYLGAASGTTVSHVSD  152 (293)
T ss_pred             CCEEEEeCCcCCHHHHHHHH
Confidence            46999999999999887763

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=96.88  E-value=0.0054  Score=58.71  Aligned_cols=131  Identities=12%  Similarity=0.105  Sum_probs=71.6

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|.-|+.+.+..             . +..+|+-.|+-.+=-..+       ++.+......++  ..+-
T Consensus       238 g~~VLD~cagpGgkt~~la~~~-------------~-~~g~V~a~Dis~~rl~~~-------~~n~~r~g~~~v--~~~~  294 (431)
T PRK14903        238 GLRVLDTCAAPGGKTTAIAELM-------------K-DQGKILAVDISREKIQLV-------EKHAKRLKLSSI--EIKI  294 (431)
T ss_pred             CCEEEEeCCCccHHHHHHHHHc-------------C-CCCEEEEEECCHHHHHHH-------HHHHHHcCCCeE--EEEE
Confidence            4689999999999999876322             0 236888888863111111       111111111121  1222


Q ss_pred             ccccccc-CCCCceeEEEc---ccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          131 GSFYQRL-FPSRGINFIHS---SYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       131 gSFy~~l-~p~~svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      ++...-. +.++++|.|+.   ++.+..+.+.|....         .. +++    -..+..+.-..+|..-++-|+|||
T Consensus       295 ~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~---------~~-~~~----~~~~l~~~Q~~iL~~a~~~LkpGG  360 (431)
T PRK14903        295 ADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLR---------RV-NKE----DFKKLSEIQLRIVSQAWKLLEKGG  360 (431)
T ss_pred             CchhhhhhhhhccCCEEEECCCCCCCccccCChHHHH---------hC-CHH----HHHHHHHHHHHHHHHHHHhcCCCC
Confidence            2321111 23567899886   234444444443211         00 111    123334455668988899999999


Q ss_pred             eEEEEecccCCC
Q 043411          207 RMFLTFLGRSIA  218 (242)
Q Consensus       207 ~lvl~~~g~~~~  218 (242)
                      +|+.+++....+
T Consensus       361 ~LvYsTCs~~~e  372 (431)
T PRK14903        361 ILLYSTCTVTKE  372 (431)
T ss_pred             EEEEEECCCChh
Confidence            999999986543

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.87  E-value=0.0098  Score=51.86  Aligned_cols=35  Identities=17%  Similarity=0.230  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 043411           32 AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ..|.|.+.+..+.   .+...||+|.|||.|.|++.+.
T Consensus        22 p~~~L~~~~~~~~---~~~~~rvL~~gCG~G~da~~LA   56 (218)
T PRK13255         22 VNPLLQKYWPALA---LPAGSRVLVPLCGKSLDMLWLA   56 (218)
T ss_pred             CCHHHHHHHHhhC---CCCCCeEEEeCCCChHhHHHHH
Confidence            4555666554332   1334799999999999999886

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=96.87  E-value=0.0044  Score=55.71  Aligned_cols=121  Identities=12%  Similarity=0.178  Sum_probs=73.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      +..+++|.+||||-.|+.++..+-.    +.   ++.  +-+|+..     |+|.---....-+..-...+..++ +.-+
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s----~~---~~~--~~~V~v~-----Dinp~mL~vgkqRa~~~~l~~~~~-~~w~  164 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKS----QF---GDR--ESKVTVL-----DINPHMLAVGKQRAKKRPLKASSR-VEWV  164 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhcc----cc---CCC--CceEEEE-----eCCHHHHHHHHHHHhhcCCCcCCc-eEEE
Confidence            4799999999999999999865522    11   112  2344444     555432222221110000111111 2234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .|+--.--||+++.|...+++.+--..+++..                 ..|||+                =|||||++.
T Consensus       165 ~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~-----------------l~EAYR----------------VLKpGGrf~  211 (296)
T KOG1540|consen  165 EGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKA-----------------LREAYR----------------VLKPGGRFS  211 (296)
T ss_pred             eCCcccCCCCCCcceeEEEecceecCCCHHHH-----------------HHHHHH----------------hcCCCcEEE
Confidence            55665666899999999999988765554442                 345555                359999999


Q ss_pred             EEecccCCC
Q 043411          210 LTFLGRSIA  218 (242)
Q Consensus       210 l~~~g~~~~  218 (242)
                      +..|..-+.
T Consensus       212 cLeFskv~~  220 (296)
T KOG1540|consen  212 CLEFSKVEN  220 (296)
T ss_pred             EEEcccccc
Confidence            999988774

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.86  E-value=0.0021  Score=49.17  Aligned_cols=112  Identities=18%  Similarity=0.248  Sum_probs=59.6

Q ss_pred             cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeeccc
Q 043411           52 FNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAGML  130 (242)
Q Consensus        52 ~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~vp  130 (242)
                      .+|+|+|||+|..++.+....                ..+++..|+-     ...-.+..  ..+..... .+  +.-+-
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~----------------~~~~~gvdi~-----~~~~~~a~--~~~~~~~~~~~--~~~~~   56 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG----------------AARVTGVDID-----PEAVELAR--RNLPRNGLDDR--VEVIV   56 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC----------------TCEEEEEESS-----HHHHHHHH--HHCHHCTTTTT--EEEEE
T ss_pred             CEEEEcCcchHHHHHHHHHHC----------------CCeEEEEEEC-----HHHHHHHH--HHHHHccCCce--EEEEE
Confidence            589999999998877665221                2566666664     11111111  00111100 11  11233


Q ss_pred             ccccccc--CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          131 GSFYQRL--FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       131 gSFy~~l--~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +++..-.  ++.+++|++++.         |+-....+        .        .+.-.++...|++.-.+-|+|||.+
T Consensus        57 ~D~~~~~~~~~~~~~D~Iv~n---------pP~~~~~~--------~--------~~~~~~~~~~~~~~~~~~L~~gG~~  111 (117)
T PF13659_consen   57 GDARDLPEPLPDGKFDLIVTN---------PPYGPRSG--------D--------KAALRRLYSRFLEAAARLLKPGGVL  111 (117)
T ss_dssp             SHHHHHHHTCTTT-EEEEEE-----------STTSBTT--------------------GGCHHHHHHHHHHHHEEEEEEE
T ss_pred             CchhhchhhccCceeEEEEEC---------CCCccccc--------c--------chhhHHHHHHHHHHHHHHcCCCeEE
Confidence            3554433  788999999992         22111000        0        0000115566899999999999999


Q ss_pred             EEEec
Q 043411          209 FLTFL  213 (242)
Q Consensus       209 vl~~~  213 (242)
                      ++.+.
T Consensus       112 ~~~~~  116 (117)
T PF13659_consen  112 VFITP  116 (117)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            98764

...

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.83  E-value=0.0012  Score=61.20  Aligned_cols=49  Identities=18%  Similarity=0.307  Sum_probs=35.9

Q ss_pred             cCCC--CceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecc
Q 043411          137 LFPS--RGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       137 l~p~--~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                      .+++  ..+|++-+-+|||..=.-.                             +-.+.||+.-++-|+|||+++.+++-
T Consensus       138 ~~~~~~~~FDvVScQFalHY~Fese-----------------------------~~ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  138 KLPPRSRKFDVVSCQFALHYAFESE-----------------------------EKARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             TSSSTTS-EEEEEEES-GGGGGSSH-----------------------------HHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             hccccCCCcceeehHHHHHHhcCCH-----------------------------HHHHHHHHHHHHhcCCCCEEEEEecC
Confidence            4444  4999999999999843311                             23456999999999999999999984

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=96.83  E-value=0.0022  Score=57.79  Aligned_cols=54  Identities=7%  Similarity=0.172  Sum_probs=40.4

Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      ++-++-+--++++|+|+++.+-||+=                                  .||..|+.--.+=|+|||.|
T Consensus       215 ~~cDm~~vPl~d~svDvaV~CLSLMg----------------------------------tn~~df~kEa~RiLk~gG~l  260 (325)
T KOG3045|consen  215 IACDMRNVPLEDESVDVAVFCLSLMG----------------------------------TNLADFIKEANRILKPGGLL  260 (325)
T ss_pred             eeccccCCcCccCcccEEEeeHhhhc----------------------------------ccHHHHHHHHHHHhccCceE
Confidence            34455555668999999988655542                                  36667888888889999999


Q ss_pred             EEEecccC
Q 043411          209 FLTFLGRS  216 (242)
Q Consensus       209 vl~~~g~~  216 (242)
                      .+...-..
T Consensus       261 ~IAEv~SR  268 (325)
T KOG3045|consen  261 YIAEVKSR  268 (325)
T ss_pred             EEEehhhh
Confidence            99887543

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.81  E-value=0.013  Score=50.13  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=27.3

Q ss_pred             CCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411          166 KRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSI  217 (242)
Q Consensus       166 kg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~  217 (242)
                      .+.|+|.++..              +...|+...+-|+|||+||++..-..+
T Consensus       103 ~daiFIGGg~~--------------i~~ile~~~~~l~~ggrlV~naitlE~  140 (187)
T COG2242         103 PDAIFIGGGGN--------------IEEILEAAWERLKPGGRLVANAITLET  140 (187)
T ss_pred             CCEEEECCCCC--------------HHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence            35677777633              233788888889999999998775543

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.81  E-value=0.0076  Score=57.78  Aligned_cols=128  Identities=13%  Similarity=0.071  Sum_probs=69.2

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|..|+.+.+.+ .             ..-+|+-.|+-..=...+-+.       +......+  +..+-
T Consensus       251 g~~VLDlgaG~G~kt~~la~~~-~-------------~~~~V~avD~s~~~l~~~~~~-------~~~~g~~~--v~~~~  307 (445)
T PRK14904        251 GSTVLDLCAAPGGKSTFMAELM-Q-------------NRGQITAVDRYPQKLEKIRSH-------ASALGITI--IETIE  307 (445)
T ss_pred             CCEEEEECCCCCHHHHHHHHHh-C-------------CCcEEEEEECCHHHHHHHHHH-------HHHhCCCe--EEEEe
Confidence            4689999999999998776332 1             125788888763211111111       11111112  22233


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccC----CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN----NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      ++. ..+.|++++|.++.        ++|+.-..    +.+.-|.  .++ +..    ++..+.-..+|..-++-|+|||
T Consensus       308 ~Da-~~~~~~~~fD~Vl~--------D~Pcsg~g~~~r~p~~~~~--~~~-~~~----~~l~~~q~~iL~~a~~~lkpgG  371 (445)
T PRK14904        308 GDA-RSFSPEEQPDAILL--------DAPCTGTGVLGRRAELRWK--LTP-EKL----AELVGLQAELLDHAASLLKPGG  371 (445)
T ss_pred             Ccc-cccccCCCCCEEEE--------cCCCCCcchhhcCcchhhc--CCH-HHH----HHHHHHHHHHHHHHHHhcCCCc
Confidence            444 33446778999984        34442110    0000010  111 111    2233345568988899999999


Q ss_pred             eEEEEecccCC
Q 043411          207 RMFLTFLGRSI  217 (242)
Q Consensus       207 ~lvl~~~g~~~  217 (242)
                      +|+.+++....
T Consensus       372 ~lvystcs~~~  382 (445)
T PRK14904        372 VLVYATCSIEP  382 (445)
T ss_pred             EEEEEeCCCCh
Confidence            99999987653

>PRK14967 putative methyltransferase; Provisional

Probab=96.78  E-value=0.0051  Score=53.23  Aligned_cols=125  Identities=11%  Similarity=0.023  Sum_probs=62.8

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..++.+..        .        ..-+++..|+.. ..-...+      ........ +  +..+-
T Consensus        37 ~~~vLDlGcG~G~~~~~la~--------~--------~~~~v~~vD~s~-~~l~~a~------~n~~~~~~-~--~~~~~   90 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAA--------A--------GAGSVTAVDISR-RAVRSAR------LNALLAGV-D--VDVRR   90 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHH--------c--------CCCeEEEEECCH-HHHHHHH------HHHHHhCC-e--eEEEE
Confidence            46999999999998776542        1        112556666642 1111111      11111111 1  22344


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccC-CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN-NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~-nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      +++.+ .++.+++|++++.--.+.-+  +....+ +....|..+.           -...++..|++.-.+-|+|||+++
T Consensus        91 ~d~~~-~~~~~~fD~Vi~npPy~~~~--~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~a~~~Lk~gG~l~  156 (223)
T PRK14967         91 GDWAR-AVEFRPFDVVVSNPPYVPAP--PDAPPSRGPARAWDAGP-----------DGRAVLDRLCDAAPALLAPGGSLL  156 (223)
T ss_pred             Cchhh-hccCCCeeEEEECCCCCCCC--cccccccChhHhhhCCC-----------cHHHHHHHHHHHHHHhcCCCcEEE
Confidence            57755 45778999999843211111  100000 0000111010           012345668887788899999999


Q ss_pred             EEeccc
Q 043411          210 LTFLGR  215 (242)
Q Consensus       210 l~~~g~  215 (242)
                      +..-..
T Consensus       157 ~~~~~~  162 (223)
T PRK14967        157 LVQSEL  162 (223)
T ss_pred             EEEecc
Confidence            865443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.77  E-value=0.0077  Score=55.34  Aligned_cols=111  Identities=21%  Similarity=0.252  Sum_probs=69.2

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      --+|+|+||+.|.-++.+.        ++    |   + -.|+--| |+=.|..-|+.+..+..     ....+|..  |
T Consensus       116 gk~VLDIGC~nGY~~frM~--------~~----G---A-~~ViGiD-P~~lf~~QF~~i~~~lg-----~~~~~~~l--p  171 (315)
T PF08003_consen  116 GKRVLDIGCNNGYYSFRML--------GR----G---A-KSVIGID-PSPLFYLQFEAIKHFLG-----QDPPVFEL--P  171 (315)
T ss_pred             CCEEEEecCCCcHHHHHHh--------hc----C---C-CEEEEEC-CChHHHHHHHHHHHHhC-----CCccEEEc--C
Confidence            4799999999999988775        11    1   2 3344444 44467777776654321     11234433  3


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      -.. +.|-..+++|+++|.-                  |.++..+|-.               .|..-..-|+|||.|++
T Consensus       172 lgv-E~Lp~~~~FDtVF~MG------------------VLYHrr~Pl~---------------~L~~Lk~~L~~gGeLvL  217 (315)
T PF08003_consen  172 LGV-EDLPNLGAFDTVFSMG------------------VLYHRRSPLD---------------HLKQLKDSLRPGGELVL  217 (315)
T ss_pred             cch-hhccccCCcCEEEEee------------------ehhccCCHHH---------------HHHHHHHhhCCCCEEEE
Confidence            333 5555578999999932                  3334444433               56666778899999999


Q ss_pred             EecccCCCC
Q 043411          211 TFLGRSIAD  219 (242)
Q Consensus       211 ~~~g~~~~~  219 (242)
                      =++..+.++
T Consensus       218 ETlvi~g~~  226 (315)
T PF08003_consen  218 ETLVIDGDE  226 (315)
T ss_pred             EEeeecCCC
Confidence            988665543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=96.74  E-value=0.014  Score=55.68  Aligned_cols=128  Identities=10%  Similarity=0.052  Sum_probs=66.8

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|..|+.+.+.+ .             +.-.|+-.|.-.. .   .+.+   +..+......++  ..+.
T Consensus       253 g~~VLDl~ag~G~kt~~la~~~-~-------------~~g~v~a~D~~~~-r---l~~~---~~n~~r~g~~~v--~~~~  309 (434)
T PRK14901        253 GEVILDACAAPGGKTTHIAELM-G-------------DQGEIWAVDRSAS-R---LKKL---QENAQRLGLKSI--KILA  309 (434)
T ss_pred             cCEEEEeCCCCchhHHHHHHHh-C-------------CCceEEEEcCCHH-H---HHHH---HHHHHHcCCCeE--EEEe
Confidence            4789999999999998876332 1             1356777777421 1   1111   111111111221  2223


Q ss_pred             ccccccc----CCCCceeEEEcccceeecccCCCcccC----CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043411          131 GSFYQRL----FPSRGINFIHSSYSVHWLSKVPENLEN----NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEI  202 (242)
Q Consensus       131 gSFy~~l----~p~~svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL  202 (242)
                      ++.-.-.    ++++++|.++.        +.|++-..    +.+.-|  ..++..     .+...+.-..+|..-++-|
T Consensus       310 ~D~~~~~~~~~~~~~~fD~Vl~--------DaPCSg~G~~~r~p~~~~--~~~~~~-----~~~l~~~Q~~iL~~a~~~l  374 (434)
T PRK14901        310 ADSRNLLELKPQWRGYFDRILL--------DAPCSGLGTLHRHPDARW--RQTPEK-----IQELAPLQAELLESLAPLL  374 (434)
T ss_pred             CChhhcccccccccccCCEEEE--------eCCCCcccccccCcchhh--hCCHHH-----HHHHHHHHHHHHHHHHHhc
Confidence            3432111    34678898886        55653211    000000  001111     1223334456888888999


Q ss_pred             ccCceEEEEecccC
Q 043411          203 VSGGRMFLTFLGRS  216 (242)
Q Consensus       203 ~pGG~lvl~~~g~~  216 (242)
                      +|||+|+.+++...
T Consensus       375 kpgG~lvystcsi~  388 (434)
T PRK14901        375 KPGGTLVYATCTLH  388 (434)
T ss_pred             CCCCEEEEEeCCCC
Confidence            99999999887653

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.69  E-value=0.0032  Score=61.50  Aligned_cols=138  Identities=11%  Similarity=0.152  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchH
Q 043411           24 IQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFN  103 (242)
Q Consensus        24 ~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn  103 (242)
                      .|++.++...|.+.-....+..   .....++|+|||.|..++.+...               .|+..++--|.-.+   
T Consensus       324 ~q~~~~e~~~p~~~i~~eklf~---~~~p~~lEIG~G~G~~~~~~A~~---------------~p~~~~iGiE~~~~---  382 (506)
T PRK01544        324 VQQNLLDNELPKYLFSKEKLVN---EKRKVFLEIGFGMGEHFINQAKM---------------NPDALFIGVEVYLN---  382 (506)
T ss_pred             HHHHHHHhhhhhhCCCHHHhCC---CCCceEEEECCCchHHHHHHHHh---------------CCCCCEEEEEeeHH---
Confidence            7888888888876644333321   34689999999999887766521               24455555554422   


Q ss_pred             HHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHH
Q 043411          104 SIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAF  183 (242)
Q Consensus       104 ~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay  183 (242)
                      .+-+.+..    ....+..++.+..-...+....||++|||-++-.+.=-|    |..- -.|.++..            
T Consensus       383 ~~~~~~~~----~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPW----pKkr-h~krRl~~------------  441 (506)
T PRK01544        383 GVANVLKL----AGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPW----IKNK-QKKKRIFN------------  441 (506)
T ss_pred             HHHHHHHH----HHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCC----CCCC-CccccccC------------
Confidence            22222211    111233466553323334577899999999999887777    3310 01333321            


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411          184 WEQFQRDFSAFLSLRSEEIVSGGRMFLT  211 (242)
Q Consensus       184 ~~q~~~D~~~FL~~Ra~EL~pGG~lvl~  211 (242)
                              ..||+.-+.-|+|||.+.+.
T Consensus       442 --------~~fl~~~~~~Lk~gG~i~~~  461 (506)
T PRK01544        442 --------KERLKILQDKLKDNGNLVFA  461 (506)
T ss_pred             --------HHHHHHHHHhcCCCCEEEEE
Confidence                    11788888888999999874

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=96.68  E-value=0.042  Score=50.03  Aligned_cols=28  Identities=18%  Similarity=0.253  Sum_probs=22.7

Q ss_pred             HHHHHHHHHhhhccCceEEEEecccCCC
Q 043411          191 FSAFLSLRSEEIVSGGRMFLTFLGRSIA  218 (242)
Q Consensus       191 ~~~FL~~Ra~EL~pGG~lvl~~~g~~~~  218 (242)
                      +..|+.--.+-|+|||.+.+.+-+++..
T Consensus       264 ~~~~~~~a~R~Lq~gg~~~le~~~~~~~  291 (328)
T KOG2904|consen  264 LVHYWLLATRMLQPGGFEQLELVERKEH  291 (328)
T ss_pred             HHHHHHhhHhhcccCCeEEEEecccccC
Confidence            4457778888999999999999988543

>PRK14968 putative methyltransferase; Provisional

Probab=96.67  E-value=0.014  Score=48.14  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHhhhccCceEEEEec
Q 043411          190 DFSAFLSLRSEEIVSGGRMFLTFL  213 (242)
Q Consensus       190 D~~~FL~~Ra~EL~pGG~lvl~~~  213 (242)
                      ....|++.-.+-|+|||.+++...
T Consensus       126 ~~~~~i~~~~~~Lk~gG~~~~~~~  149 (188)
T PRK14968        126 VIDRFLDEVGRYLKPGGRILLLQS  149 (188)
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEEc
Confidence            356688888899999999988764

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.65  E-value=0.0026  Score=59.26  Aligned_cols=117  Identities=17%  Similarity=0.224  Sum_probs=71.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      .--.|+|.|||+|..|+..++.=-                -.||--     +-+.    ..+....+...+--.-.+..+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA----------------~~vYAv-----EAS~----MAqyA~~Lv~~N~~~~rItVI  231 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGA----------------KKVYAV-----EASE----MAQYARKLVASNNLADRITVI  231 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCc----------------ceEEEE-----ehhH----HHHHHHHHHhcCCccceEEEc
Confidence            346799999999999987763221                111111     1111    111112222211123456789


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      ||-. +.+-.|+.+|+++|         -|-      |.+.+               -.+=+..+|.+| +-|+|.|.|+
T Consensus       232 ~GKi-EdieLPEk~DviIS---------EPM------G~mL~---------------NERMLEsYl~Ar-k~l~P~GkMf  279 (517)
T KOG1500|consen  232 PGKI-EDIELPEKVDVIIS---------EPM------GYMLV---------------NERMLESYLHAR-KWLKPNGKMF  279 (517)
T ss_pred             cCcc-ccccCchhccEEEe---------ccc------hhhhh---------------hHHHHHHHHHHH-hhcCCCCccc
Confidence            9988 77888889999999         233      21111               125677899999 9999999996


Q ss_pred             EEecccCCCCCCCCh
Q 043411          210 LTFLGRSIADPSSKD  224 (242)
Q Consensus       210 l~~~g~~~~~~~~~~  224 (242)
                      = ++|+-...|.+.+
T Consensus       280 P-T~gdiHlAPFsDE  293 (517)
T KOG1500|consen  280 P-TVGDIHLAPFSDE  293 (517)
T ss_pred             C-cccceeecccchH
Confidence            5 4566666666553

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=96.64  E-value=0.0068  Score=51.48  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=16.9

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..++.+.
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a   59 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEAS   59 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHH
Confidence            45799999999998888665

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.64  E-value=0.019  Score=54.92  Aligned_cols=127  Identities=16%  Similarity=0.102  Sum_probs=65.7

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|..|+.+.+..             . +.-+|+-.|+-.+= -...+      ..+......+  +..+-
T Consensus       251 g~~VLDlgaG~G~~t~~la~~~-------------~-~~~~v~avDi~~~~-l~~~~------~n~~~~g~~~--v~~~~  307 (444)
T PRK14902        251 GDTVLDACAAPGGKTTHIAELL-------------K-NTGKVVALDIHEHK-LKLIE------ENAKRLGLTN--IETKA  307 (444)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHh-------------C-CCCEEEEEeCCHHH-HHHHH------HHHHHcCCCe--EEEEe
Confidence            4689999999999999776332             0 23577777875311 11111      1111111122  22334


Q ss_pred             cccccc--cCCCCceeEEEc---ccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          131 GSFYQR--LFPSRGINFIHS---SYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       131 gSFy~~--l~p~~svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      +++.+-  .++ +++|++++   .+....+.+-|...       |.  .+ +...    +...+--..+|+.-.+-|+||
T Consensus       308 ~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~-------~~--~~-~~~~----~~l~~~q~~iL~~a~~~LkpG  372 (444)
T PRK14902        308 LDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIK-------YN--KT-KEDI----ESLQEIQLEILESVAQYLKKG  372 (444)
T ss_pred             CCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchh-------hc--CC-HHHH----HHHHHHHHHHHHHHHHHcCCC
Confidence            455321  123 78999986   22233333333311       10  01 1111    112222345788888889999


Q ss_pred             ceEEEEeccc
Q 043411          206 GRMFLTFLGR  215 (242)
Q Consensus       206 G~lvl~~~g~  215 (242)
                      |+|+.+++..
T Consensus       373 G~lvystcs~  382 (444)
T PRK14902        373 GILVYSTCTI  382 (444)
T ss_pred             CEEEEEcCCC
Confidence            9999877654

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=96.64  E-value=0.015  Score=52.56  Aligned_cols=121  Identities=15%  Similarity=0.223  Sum_probs=63.9

Q ss_pred             EEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccc
Q 043411           53 NVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGS  132 (242)
Q Consensus        53 ~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgS  132 (242)
                      +|+|+|||||.-++.+....               |...|+..|+.. |--.+-+.      -...++..+ +..... +
T Consensus       113 ~ilDlGTGSG~iai~la~~~---------------~~~~V~a~Dis~-~Al~~A~~------Na~~~~l~~-~~~~~~-d  168 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEG---------------PDAEVIAVDISP-DALALARE------NAERNGLVR-VLVVQS-D  168 (280)
T ss_pred             cEEEecCChHHHHHHHHhhC---------------cCCeEEEEECCH-HHHHHHHH------HHHHcCCcc-EEEEee-e
Confidence            89999999999988776332               457899999862 11111110      011111112 111222 6


Q ss_pred             cccccCCCCceeEEEcccceeecccCCCcccCCCCceEEc---CCCChHHHHHHHH-HHHHHHHHHHHHHHhhhccCceE
Q 043411          133 FYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYIT---KSSPPSVCQAFWE-QFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       133 Fy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~---~~s~~~v~~ay~~-q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +++.+-.  .+|+++|         .|+-+..+ ......   .-.|..  ..+.. -.....++|+..=..-|+|||.+
T Consensus       169 lf~~~~~--~fDlIVs---------NPPYip~~-~~~~~~~~~~~EP~~--Al~~g~dGl~~~~~i~~~a~~~l~~~g~l  234 (280)
T COG2890         169 LFEPLRG--KFDLIVS---------NPPYIPAE-DPELLPEVVRYEPLL--ALVGGGDGLEVYRRILGEAPDILKPGGVL  234 (280)
T ss_pred             cccccCC--ceeEEEe---------CCCCCCCc-ccccChhhhccCHHH--HHccCccHHHHHHHHHHhhHHHcCCCcEE
Confidence            6666665  8999999         56655432 000000   000100  01110 12234455777777788998888


Q ss_pred             EEE
Q 043411          209 FLT  211 (242)
Q Consensus       209 vl~  211 (242)
                      ++-
T Consensus       235 ~le  237 (280)
T COG2890         235 ILE  237 (280)
T ss_pred             EEE
Confidence            773

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.53  E-value=0.026  Score=52.22  Aligned_cols=137  Identities=18%  Similarity=0.292  Sum_probs=72.6

Q ss_pred             HHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhH
Q 043411           34 PFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFY  113 (242)
Q Consensus        34 ~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~  113 (242)
                      .+|++...++... .+...+|+|+|||+|.-|..+++.+    .+.      . ..+..+=-|+.. ++  |    ....
T Consensus        61 ~iL~~~~~~Ia~~-i~~~~~lIELGsG~~~Kt~~LL~aL----~~~------~-~~~~Y~plDIS~-~~--L----~~a~  121 (319)
T TIGR03439        61 EILKKHSSDIAAS-IPSGSMLVELGSGNLRKVGILLEAL----ERQ------K-KSVDYYALDVSR-SE--L----QRTL  121 (319)
T ss_pred             HHHHHHHHHHHHh-cCCCCEEEEECCCchHHHHHHHHHH----Hhc------C-CCceEEEEECCH-HH--H----HHHH
Confidence            3444444444321 2445689999999999999888655    221      1 136777777763 11  1    1111


Q ss_pred             HhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCC-----CChHHHHHHHHHHH
Q 043411          114 ERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKS-----SPPSVCQAFWEQFQ  188 (242)
Q Consensus       114 ~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~-----s~~~v~~ay~~q~~  188 (242)
                      ..+.....+.+=+.++-|+|.               ..++||.+ |. ...++.-++.-++     .+++          
T Consensus       122 ~~L~~~~~p~l~v~~l~gdy~---------------~~l~~l~~-~~-~~~~~r~~~flGSsiGNf~~~e----------  174 (319)
T TIGR03439       122 AELPLGNFSHVRCAGLLGTYD---------------DGLAWLKR-PE-NRSRPTTILWLGSSIGNFSRPE----------  174 (319)
T ss_pred             HhhhhccCCCeEEEEEEecHH---------------HHHhhccc-cc-ccCCccEEEEeCccccCCCHHH----------
Confidence            122212335577778888884               33444432 00 0001111222221     2222          


Q ss_pred             HHHHHHHHHHHh-hhccCceEEEEecccCCC
Q 043411          189 RDFSAFLSLRSE-EIVSGGRMFLTFLGRSIA  218 (242)
Q Consensus       189 ~D~~~FL~~Ra~-EL~pGG~lvl~~~g~~~~  218 (242)
                        -..||+.-++ -|.|||.|++++=+..+.
T Consensus       175 --a~~fL~~~~~~~l~~~d~lLiG~D~~k~~  203 (319)
T TIGR03439       175 --AAAFLAGFLATALSPSDSFLIGLDGCKDP  203 (319)
T ss_pred             --HHHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence              2237766666 889999999987555443

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=96.47  E-value=0.023  Score=50.44  Aligned_cols=22  Identities=9%  Similarity=0.250  Sum_probs=17.9

Q ss_pred             HHHHHHHHHhhhccCceEEEEe
Q 043411          191 FSAFLSLRSEEIVSGGRMFLTF  212 (242)
Q Consensus       191 ~~~FL~~Ra~EL~pGG~lvl~~  212 (242)
                      ++.++..=.+-|+|||++++..
T Consensus       195 ~~~i~~~a~~~L~~gG~l~l~~  216 (251)
T TIGR03704       195 LRRVAAGAPDWLAPGGHLLVET  216 (251)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEE
Confidence            5567877778899999999864

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=96.45  E-value=0.027  Score=49.38  Aligned_cols=111  Identities=16%  Similarity=0.180  Sum_probs=59.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCC--ceee
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGP--CFIA  127 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~--~f~~  127 (242)
                      ...-++++|||+|+|=-..                ...|.-.|++-|=-     .-|.....  ++....++.+  .|+.
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy----------------~~~p~~svt~lDpn-----~~mee~~~--ks~~E~k~~~~~~fvv  132 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFY----------------PWKPINSVTCLDPN-----EKMEEIAD--KSAAEKKPLQVERFVV  132 (252)
T ss_pred             CccceEEecccCCCCcccc----------------cCCCCceEEEeCCc-----HHHHHHHH--HHHhhccCcceEEEEe
Confidence            3577899999999993211                01133555555533     12222111  1111122222  3666


Q ss_pred             ccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          128 GMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       128 ~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      |-+.+. -|| ++.|+|.++...+|-=                  -.++        .+..+..++.       |+|||+
T Consensus       133 a~ge~l-~~l-~d~s~DtVV~TlvLCS------------------ve~~--------~k~L~e~~rl-------LRpgG~  177 (252)
T KOG4300|consen  133 ADGENL-PQL-ADGSYDTVVCTLVLCS------------------VEDP--------VKQLNEVRRL-------LRPGGR  177 (252)
T ss_pred             echhcC-ccc-ccCCeeeEEEEEEEec------------------cCCH--------HHHHHHHHHh-------cCCCcE
Confidence            655444 222 9999999999555432                  1111        1222333334       599999


Q ss_pred             EEEEecccCCC
Q 043411          208 MFLTFLGRSIA  218 (242)
Q Consensus       208 lvl~~~g~~~~  218 (242)
                      +++..=++..-
T Consensus       178 iifiEHva~~y  188 (252)
T KOG4300|consen  178 IIFIEHVAGEY  188 (252)
T ss_pred             EEEEecccccc
Confidence            99988776553

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=96.45  E-value=0.0025  Score=54.65  Aligned_cols=113  Identities=18%  Similarity=0.350  Sum_probs=63.3

Q ss_pred             cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec-cc
Q 043411           52 FNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG-ML  130 (242)
Q Consensus        52 ~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~-vp  130 (242)
                      ..++|+|||.|...+.+..        .       .|+..++--|.-.+=.....+.+       ......|+.+.- -.
T Consensus        19 ~l~lEIG~G~G~~l~~~A~--------~-------~Pd~n~iGiE~~~~~v~~a~~~~-------~~~~l~Nv~~~~~da   76 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAK--------R-------NPDINFIGIEIRKKRVAKALRKA-------EKRGLKNVRFLRGDA   76 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHH--------H-------STTSEEEEEES-HHHHHHHHHHH-------HHHTTSSEEEEES-C
T ss_pred             CeEEEecCCCCHHHHHHHH--------H-------CCCCCEEEEecchHHHHHHHHHH-------HhhcccceEEEEccH
Confidence            3999999999988665541        1       25677776666532222221111       112335655543 34


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      ..+...+++++|||-++=.+-=-|-.+-=     .|.++.-     +               .||..-++-|+|||.+.+
T Consensus        77 ~~~l~~~~~~~~v~~i~i~FPDPWpK~rH-----~krRl~~-----~---------------~fl~~~~~~L~~gG~l~~  131 (195)
T PF02390_consen   77 RELLRRLFPPGSVDRIYINFPDPWPKKRH-----HKRRLVN-----P---------------EFLELLARVLKPGGELYF  131 (195)
T ss_dssp             TTHHHHHSTTTSEEEEEEES-----SGGG-----GGGSTTS-----H---------------HHHHHHHHHEEEEEEEEE
T ss_pred             HHHHhhcccCCchheEEEeCCCCCcccch-----hhhhcCC-----c---------------hHHHHHHHHcCCCCEEEE
Confidence            45578899999999998866666622210     1222211     1               188888888999999877


Q ss_pred             E
Q 043411          211 T  211 (242)
Q Consensus       211 ~  211 (242)
                      .
T Consensus       132 ~  132 (195)
T PF02390_consen  132 A  132 (195)
T ss_dssp             E
T ss_pred             E
Confidence            4

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.45  E-value=0.0034  Score=51.78  Aligned_cols=54  Identities=11%  Similarity=0.105  Sum_probs=41.0

Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      ++..+--++++++|++++++++||+.+..                                 .+|+.-.+-|+|||.+++
T Consensus        33 ~d~~~lp~~~~~fD~v~~~~~l~~~~d~~---------------------------------~~l~ei~rvLkpGG~l~i   79 (160)
T PLN02232         33 GDAIDLPFDDCEFDAVTMGYGLRNVVDRL---------------------------------RAMKEMYRVLKPGSRVSI   79 (160)
T ss_pred             echhhCCCCCCCeeEEEecchhhcCCCHH---------------------------------HHHHHHHHHcCcCeEEEE
Confidence            45544446788999999999999974322                                 267777777899999999


Q ss_pred             EecccCC
Q 043411          211 TFLGRSI  217 (242)
Q Consensus       211 ~~~g~~~  217 (242)
                      .-++..+
T Consensus        80 ~d~~~~~   86 (160)
T PLN02232         80 LDFNKSN   86 (160)
T ss_pred             EECCCCC
Confidence            9887654

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.35  E-value=0.015  Score=51.39  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=16.4

Q ss_pred             HHHHHHhhhccCceEEEEeccc
Q 043411          194 FLSLRSEEIVSGGRMFLTFLGR  215 (242)
Q Consensus       194 FL~~Ra~EL~pGG~lvl~~~g~  215 (242)
                      ++..-.+-|+|||+++++.+..
T Consensus       195 l~~~~~~~LkpgG~lilsgi~~  216 (250)
T PRK00517        195 LAPDLARLLKPGGRLILSGILE  216 (250)
T ss_pred             HHHHHHHhcCCCcEEEEEECcH
Confidence            4555556679999999986654

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=96.31  E-value=0.0048  Score=57.38  Aligned_cols=105  Identities=19%  Similarity=0.255  Sum_probs=65.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      +.-+|+|.|||+|..|+..++.=             . ..+-.+       |++.+...-.    .+...+.-..-+..+
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG-------------A-~~V~aV-------e~S~ia~~a~----~iv~~N~~~~ii~vi  114 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG-------------A-RKVYAV-------EASSIADFAR----KIVKDNGLEDVITVI  114 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-------------c-ceEEEE-------echHHHHHHH----HHHHhcCccceEEEe
Confidence            46799999999999988765221             0 113333       5555543221    111111112234456


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .|.--+-.+|...||+|+|=|-=.||                              -+..=+...|-+|-+-|+|||.++
T Consensus       115 ~gkvEdi~LP~eKVDiIvSEWMGy~L------------------------------l~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  115 KGKVEDIELPVEKVDIIVSEWMGYFL------------------------------LYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             ecceEEEecCccceeEEeehhhhHHH------------------------------HHhhhhhhhhhhhhhccCCCceEc
Confidence            66776667788999999995444443                              233445568999999999999986

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=96.31  E-value=0.015  Score=48.72  Aligned_cols=124  Identities=13%  Similarity=0.109  Sum_probs=59.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ...+|+|+|||+|--++.+....               ..-.|+++|++  +...+.+. +.....    ....++-+..
T Consensus        45 ~~~~VLELGaG~Gl~gi~~a~~~---------------~~~~Vv~TD~~--~~l~~l~~Ni~~N~~----~~~~~v~v~~  103 (173)
T PF10294_consen   45 RGKRVLELGAGTGLPGIAAAKLF---------------GAARVVLTDYN--EVLELLRRNIELNGS----LLDGRVSVRP  103 (173)
T ss_dssp             TTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S---HHHHHHHHHHTT------------EEEE
T ss_pred             CCceEEEECCccchhHHHHHhcc---------------CCceEEEeccc--hhhHHHHHHHHhccc----cccccccCcE
Confidence            46899999999998887665320               13789999998  32222221 110000    0012222221


Q ss_pred             --cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          129 --MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       129 --vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                        ++.........+..+|+|+.+=++.+=+                                 .+..|++.-..=|+|+|
T Consensus       104 L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~---------------------------------~~~~L~~tl~~ll~~~~  150 (173)
T PF10294_consen  104 LDWGDELDSDLLEPHSFDVILASDVLYDEE---------------------------------LFEPLVRTLKRLLKPNG  150 (173)
T ss_dssp             --TTS-HHHHHHS-SSBSEEEEES--S-GG---------------------------------GHHHHHHHHHHHBTT-T
T ss_pred             EEecCcccccccccccCCEEEEecccchHH---------------------------------HHHHHHHHHHHHhCCCC
Confidence              2222323445567888888866665511                                 11225555566678999


Q ss_pred             eEEEEecccCCCCCCCChhhHHHHHHH
Q 043411          207 RMFLTFLGRSIADPSSKDCCCLWELLT  233 (242)
Q Consensus       207 ~lvl~~~g~~~~~~~~~~~~~~~~~l~  233 (242)
                      .++++..-|...      ...+|+.++
T Consensus       151 ~vl~~~~~R~~~------~~~F~~~~~  171 (173)
T PF10294_consen  151 KVLLAYKRRRKS------EQEFFDRLK  171 (173)
T ss_dssp             TEEEEEE-S-TG------GCHHHHHH-
T ss_pred             EEEEEeCEecHH------HHHHHHHhh
Confidence            977777666332      134566654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=96.27  E-value=0.058  Score=49.73  Aligned_cols=19  Identities=26%  Similarity=0.580  Sum_probs=16.8

Q ss_pred             ccEEeeecCCCCcchHHHH
Q 043411           51 CFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~   69 (242)
                      ..+|+|+|||+|.+++.+.
T Consensus       145 ~~~VLDlGcGtG~~a~~la  163 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLA  163 (315)
T ss_pred             CCEEEEecCCCCHHHHHHH
Confidence            5799999999999988776

>PRK00811 spermidine synthase; Provisional

Probab=96.27  E-value=0.02  Score=51.68  Aligned_cols=114  Identities=13%  Similarity=0.079  Sum_probs=60.2

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCC-cee
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGP-CFI  126 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~-~f~  126 (242)
                      +++-+|+|+|||+|..+..+++        +       ++.-+|...|+-. ..-.+.+. ++.......  ..++ -++
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~--------~-------~~~~~V~~VEid~-~vv~~a~~~~~~~~~~~~--~d~rv~v~  136 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLK--------H-------PSVEKITLVEIDE-RVVEVCRKYLPEIAGGAY--DDPRVELV  136 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHc--------C-------CCCCEEEEEeCCH-HHHHHHHHHhHHhccccc--cCCceEEE
Confidence            5678999999999988776641        1       1224666677653 22222222 111100000  1122 223


Q ss_pred             eccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          127 AGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       127 ~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      .+=+..|-.+  +++++|+|++-.+-+|   .|.                   ..-|.       ..|++...+-|+|||
T Consensus       137 ~~Da~~~l~~--~~~~yDvIi~D~~dp~---~~~-------------------~~l~t-------~ef~~~~~~~L~~gG  185 (283)
T PRK00811        137 IGDGIKFVAE--TENSFDVIIVDSTDPV---GPA-------------------EGLFT-------KEFYENCKRALKEDG  185 (283)
T ss_pred             ECchHHHHhh--CCCcccEEEECCCCCC---Cch-------------------hhhhH-------HHHHHHHHHhcCCCc
Confidence            3323333333  5678999998544333   011                   01121       247777778889999


Q ss_pred             eEEEE
Q 043411          207 RMFLT  211 (242)
Q Consensus       207 ~lvl~  211 (242)
                      ++++.
T Consensus       186 vlv~~  190 (283)
T PRK00811        186 IFVAQ  190 (283)
T ss_pred             EEEEe
Confidence            99874

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=96.23  E-value=0.0063  Score=58.71  Aligned_cols=108  Identities=18%  Similarity=0.293  Sum_probs=57.8

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|+.+...++..    .+.    +   -...||--.--.|=+-++=       ..+..++++.. |..+.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~----~~~----~---~a~~VyAVEkn~~A~~~l~-------~~v~~n~w~~~-V~vi~  247 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAG----ARA----G---GAVKVYAVEKNPNAVVTLQ-------KRVNANGWGDK-VTVIH  247 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTT----HHH----C---CESEEEEEESSTHHHHHHH-------HHHHHTTTTTT-EEEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHH----HHh----C---CCeEEEEEcCCHhHHHHHH-------HHHHhcCCCCe-EEEEe
Confidence            5899999999999988776433    222    1   1255554332211111111       11111233222 45677


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      |+. +.+-++..+|+++|    -||=.    ..+|+       .+ ++               .|.+|.+=|+|||.++
T Consensus       248 ~d~-r~v~lpekvDIIVS----ElLGs----fg~nE-------l~-pE---------------~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  248 GDM-REVELPEKVDIIVS----ELLGS----FGDNE-------LS-PE---------------CLDAADRFLKPDGIMI  294 (448)
T ss_dssp             S-T-TTSCHSS-EEEEEE-------BT----TBTTT-------SH-HH---------------HHHHGGGGEEEEEEEE
T ss_pred             Ccc-cCCCCCCceeEEEE----eccCC----ccccc-------cC-HH---------------HHHHHHhhcCCCCEEe
Confidence            787 88888889999999    44421    22232       11 11               5778888999999886

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=96.22  E-value=0.065  Score=49.23  Aligned_cols=25  Identities=20%  Similarity=0.093  Sum_probs=19.7

Q ss_pred             HHHHHHHHhhhccCceEEEEecccC
Q 043411          192 SAFLSLRSEEIVSGGRMFLTFLGRS  216 (242)
Q Consensus       192 ~~FL~~Ra~EL~pGG~lvl~~~g~~  216 (242)
                      ..+|+.-++-|+|||++++.+....
T Consensus       274 ~~~l~~~~r~Lk~gG~lv~~~~~~~  298 (329)
T TIGR01177       274 ERSLEEFHEVLKSEGWIVYAVPTRI  298 (329)
T ss_pred             HHHHHHHHHHccCCcEEEEEEcCCC
Confidence            4477777788899999999887543

This family is found exclusively in the Archaea.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=96.13  E-value=0.029  Score=51.42  Aligned_cols=31  Identities=29%  Similarity=0.381  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 043411           31 KAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        31 ~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~   69 (242)
                      -++.+|++.+.        +..+|+|+|||||-.|+...
T Consensus       151 lcL~~Le~~~~--------~g~~vlDvGcGSGILaIAa~  181 (300)
T COG2264         151 LCLEALEKLLK--------KGKTVLDVGCGSGILAIAAA  181 (300)
T ss_pred             HHHHHHHHhhc--------CCCEEEEecCChhHHHHHHH
Confidence            45555665542        56899999999999888664

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.06  E-value=0.045  Score=48.85  Aligned_cols=30  Identities=7%  Similarity=0.056  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411          188 QRDFSAFLSLRSEEIVSGGRMFLTFLGRSI  217 (242)
Q Consensus       188 ~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~  217 (242)
                      .+.-..+|+.=++-|+|||+|+.+++....
T Consensus       175 ~~~q~~iL~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       175 SALQKELIDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            334455888888889999999999876544

>TIGR00417 speE spermidine synthase

Probab=95.89  E-value=0.015  Score=52.02  Aligned_cols=19  Identities=16%  Similarity=0.281  Sum_probs=15.7

Q ss_pred             HHHHHHHhhhccCceEEEE
Q 043411          193 AFLSLRSEEIVSGGRMFLT  211 (242)
Q Consensus       193 ~FL~~Ra~EL~pGG~lvl~  211 (242)
                      .|++.-++-|+|||++++.
T Consensus       167 ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       167 EFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             HHHHHHHHHhCCCcEEEEc
Confidence            3777777888999999986

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.76  E-value=0.087  Score=48.73  Aligned_cols=20  Identities=20%  Similarity=0.370  Sum_probs=17.2

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      +..+|+|+|||+|.++..+.
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA   99 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMS   99 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHH
Confidence            34799999999999998775

>PRK07402 precorrin-6B methylase; Provisional

Probab=95.76  E-value=0.048  Score=46.09  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=18.4

Q ss_pred             HHHHHHHHHhhhccCceEEEEecc
Q 043411          191 FSAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       191 ~~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                      +..+|+.-.+-|+|||++++....
T Consensus       121 ~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        121 IKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEeec
Confidence            344777777779999999998753

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=95.64  E-value=0.03  Score=50.95  Aligned_cols=136  Identities=18%  Similarity=0.185  Sum_probs=84.0

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecC
Q 043411           17 SYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLND   96 (242)
Q Consensus        17 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nD   96 (242)
                      -|++.+..=...-...+|+..+.+...     +.-..++|.|||.|.-+.                  .. |...++-.|
T Consensus        17 IYd~ia~~fs~tr~~~Wp~v~qfl~~~-----~~gsv~~d~gCGngky~~------------------~~-p~~~~ig~D   72 (293)
T KOG1331|consen   17 IYDKIATHFSATRAAPWPMVRQFLDSQ-----PTGSVGLDVGCGNGKYLG------------------VN-PLCLIIGCD   72 (293)
T ss_pred             HHHHhhhhccccccCccHHHHHHHhcc-----CCcceeeecccCCcccCc------------------CC-Ccceeeecc
Confidence            356555553333344566777766532     446899999999996532                  22 336777777


Q ss_pred             CCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCC
Q 043411           97 LPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSP  176 (242)
Q Consensus        97 Lp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~  176 (242)
                      ++.       ..+    ..-.. .....-   +-.+.-.-.+++.++|.+.|.+.+||||.--.                
T Consensus        73 ~c~-------~l~----~~ak~-~~~~~~---~~ad~l~~p~~~~s~d~~lsiavihhlsT~~R----------------  121 (293)
T KOG1331|consen   73 LCT-------GLL----GGAKR-SGGDNV---CRADALKLPFREESFDAALSIAVIHHLSTRER----------------  121 (293)
T ss_pred             hhh-------hhc----ccccc-CCCcee---ehhhhhcCCCCCCccccchhhhhhhhhhhHHH----------------
Confidence            772       111    11110 111101   11244577789999999999999999886322                


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCCCCCC
Q 043411          177 PSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPS  221 (242)
Q Consensus       177 ~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~  221 (242)
                             .+       +.++.-.+.|+|||.+.+..-+.....+.
T Consensus       122 -------R~-------~~l~e~~r~lrpgg~~lvyvwa~~q~~~~  152 (293)
T KOG1331|consen  122 -------RE-------RALEELLRVLRPGGNALVYVWALEQHQSS  152 (293)
T ss_pred             -------HH-------HHHHHHHHHhcCCCceEEEEehhhccCcc
Confidence                   11       14566667889999999998887665543

>PRK04457 spermidine synthase; Provisional

Probab=95.60  E-value=0.045  Score=48.93  Aligned_cols=23  Identities=17%  Similarity=0.338  Sum_probs=18.8

Q ss_pred             HHHHHHhhhccCceEEEEecccC
Q 043411          194 FLSLRSEEIVSGGRMFLTFLGRS  216 (242)
Q Consensus       194 FL~~Ra~EL~pGG~lvl~~~g~~  216 (242)
                      |++...+-|+|||++++...+++
T Consensus       159 fl~~~~~~L~pgGvlvin~~~~~  181 (262)
T PRK04457        159 FFDDCRNALSSDGIFVVNLWSRD  181 (262)
T ss_pred             HHHHHHHhcCCCcEEEEEcCCCc
Confidence            78888888999999999877653

>PHA03412 putative methyltransferase; Provisional

Probab=95.33  E-value=0.032  Score=49.61  Aligned_cols=20  Identities=25%  Similarity=0.238  Sum_probs=16.9

Q ss_pred             ccEEeeecCCCCcchHHHHH
Q 043411           51 CFNVADLGCSSGPNTLLVVS   70 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~   70 (242)
                      ..+|+|+|||+|..++.+..
T Consensus        50 ~grVLDlG~GSG~Lalala~   69 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVH   69 (241)
T ss_pred             CCEEEEccChHHHHHHHHHH
Confidence            47999999999988887653

>PRK01581 speE spermidine synthase; Validated

Probab=95.30  E-value=0.037  Score=52.21  Aligned_cols=18  Identities=6%  Similarity=0.130  Sum_probs=15.1

Q ss_pred             HHHHHHhhhccCceEEEE
Q 043411          194 FLSLRSEEIVSGGRMFLT  211 (242)
Q Consensus       194 FL~~Ra~EL~pGG~lvl~  211 (242)
                      |++...+-|+|||+|++.
T Consensus       250 Fy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        250 LFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             HHHHHHHhcCCCcEEEEe
Confidence            677777788999999886

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=95.18  E-value=0.087  Score=43.46  Aligned_cols=21  Identities=19%  Similarity=0.140  Sum_probs=17.7

Q ss_pred             CccEEeeecCCCCcchHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVS   70 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~   70 (242)
                      ..-+|+|+|||+|..|..+++
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~   33 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLE   33 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHh
Confidence            346899999999999998763

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.12  E-value=0.32  Score=41.94  Aligned_cols=144  Identities=14%  Similarity=0.200  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCch
Q 043411           32 AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPD  111 (242)
Q Consensus        32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~  111 (242)
                      +++.||+...++..   ..+.-++|+|||||--|-.+.+.+.              |....+-.|+-           |.
T Consensus        28 LlDaLekd~~eL~~---~~~~i~lEIG~GSGvvstfL~~~i~--------------~~~~~latDiN-----------p~   79 (209)
T KOG3191|consen   28 LLDALEKDAAELKG---HNPEICLEIGCGSGVVSTFLASVIG--------------PQALYLATDIN-----------PE   79 (209)
T ss_pred             HHHHHHHHHHHHhh---cCceeEEEecCCcchHHHHHHHhcC--------------CCceEEEecCC-----------HH
Confidence            56777777776643   2367899999999987777765552              24667777774           21


Q ss_pred             -hHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHH--HHHH
Q 043411          112 -FYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFW--EQFQ  188 (242)
Q Consensus       112 -~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~--~q~~  188 (242)
                       ....+...+-+.+-+-.|-.|+..-|-+ +++|+..=         .|+-+....+.|-     ..-...||+  +-.+
T Consensus        80 A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~-~~VDvLvf---------NPPYVpt~~~~i~-----~~~i~~a~aGG~~Gr  144 (209)
T KOG3191|consen   80 ALEATLETARCNRVHIDVVRTDLLSGLRN-ESVDVLVF---------NPPYVPTSDEEIG-----DEGIASAWAGGKDGR  144 (209)
T ss_pred             HHHHHHHHHHhcCCccceeehhHHhhhcc-CCccEEEE---------CCCcCcCCcccch-----hHHHHHHHhcCcchH
Confidence             1111111111223344555677666666 88887654         2443332222220     111234455  4455


Q ss_pred             HHHHHHHHHHHhhhccCceEEEEecccCCC
Q 043411          189 RDFSAFLSLRSEEIVSGGRMFLTFLGRSIA  218 (242)
Q Consensus       189 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~  218 (242)
                      +=..+||..--.=|.|-|++.+....++..
T Consensus       145 ~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p  174 (209)
T KOG3191|consen  145 EVTDRLLPQVPDILSPRGVFYLVALRANKP  174 (209)
T ss_pred             HHHHHHHhhhhhhcCcCceEEeeehhhcCH
Confidence            556778877777889999999998876553

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=94.94  E-value=0.085  Score=49.07  Aligned_cols=118  Identities=19%  Similarity=0.267  Sum_probs=65.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      .--.++|+|||-|.--+.--..-|+            . -+-+-..|...||-..-++.......   +..+...|++  
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~------------~-~igiDIAevSI~qa~~RYrdm~~r~~---~~~f~a~f~~--  178 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIG------------E-YIGIDIAEVSINQARKRYRDMKNRFK---KFIFTAVFIA--  178 (389)
T ss_pred             cccccceeccCCcccHhHhhhhccc------------c-eEeeehhhccHHHHHHHHHHHHhhhh---cccceeEEEE--
Confidence            3456788999999874433211111            0 13333334444554444443322111   1112334443  


Q ss_pred             cccccccc---C--CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043411          130 LGSFYQRL---F--PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVS  204 (242)
Q Consensus       130 pgSFy~~l---~--p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~p  204 (242)
                      +-+|+++|   +  ++-++|++=|=+|+|+-=.                 +-            +-.+.+|+.-++-|+|
T Consensus       179 ~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFe-----------------te------------e~ar~~l~Nva~~Lkp  229 (389)
T KOG1975|consen  179 ADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFE-----------------TE------------ESARIALRNVAKCLKP  229 (389)
T ss_pred             eccchhHHHHhccCCCCCcceeeeeeeEeeeec-----------------cH------------HHHHHHHHHHHhhcCC
Confidence            34666333   2  3334999999999998111                 11            1123488999999999


Q ss_pred             CceEEEEecc
Q 043411          205 GGRMFLTFLG  214 (242)
Q Consensus       205 GG~lvl~~~g  214 (242)
                      ||.++-|++-
T Consensus       230 GG~FIgTiPd  239 (389)
T KOG1975|consen  230 GGVFIGTIPD  239 (389)
T ss_pred             CcEEEEecCc
Confidence            9999988764

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=94.92  E-value=0.4  Score=43.37  Aligned_cols=127  Identities=15%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHH---hhhh---cCCCC
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYE---RIKK---DKFGP  123 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~---~l~~---~~~~~  123 (242)
                      .++||--.|||||-=.--++-.+.+....      .....++|+-.|+-.   ..|=+.-.....   .+..   ....+
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~------~~~~~~~I~AtDId~---~~L~~A~~G~Y~~~~~~~~~~~~~~~r  166 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGK------LAGFRVKILATDIDL---SVLEKARAGIYPSRELLRGLPPELLRR  166 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhcc------ccCCceEEEEEECCH---HHHHHHhcCCCChhHhhccCCHHHHhh
Confidence            58999999999996544333223222221      122359999999952   222111111000   0000   01135


Q ss_pred             ceeeccccccc--------------cccC---CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHH
Q 043411          124 CFIAGMLGSFY--------------QRLF---PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQ  186 (242)
Q Consensus       124 ~f~~~vpgSFy--------------~~l~---p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q  186 (242)
                      +|.-+.+|+|-              +-+.   ..+-+|+|+|=+.|=.+++.-                        +  
T Consensus       167 yF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~------------------------q--  220 (268)
T COG1352         167 YFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET------------------------Q--  220 (268)
T ss_pred             hEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH------------------------H--
Confidence            66666555442              1121   456799999955554443311                        1  


Q ss_pred             HHHHHHHHHHHHHhhhccCceEEEEecccCCCC
Q 043411          187 FQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIAD  219 (242)
Q Consensus       187 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~  219 (242)
                           .+.++.-+.-|+|||+|++   |..+..
T Consensus       221 -----~~il~~f~~~L~~gG~Lfl---G~sE~~  245 (268)
T COG1352         221 -----ERILRRFADSLKPGGLLFL---GHSETI  245 (268)
T ss_pred             -----HHHHHHHHHHhCCCCEEEE---ccCccc
Confidence                 1256666778899999999   555543

>PLN02672 methionine S-methyltransferase

Probab=94.90  E-value=0.064  Score=56.87  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=24.1

Q ss_pred             cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           52 FNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        52 ~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      .+|+|+|||+|..++.+....               +..+++.-|+-
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~---------------~~~~v~avDis  151 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKW---------------LPSKVYGLDIN  151 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHC---------------CCCEEEEEECC
Confidence            589999999999998776322               23577777775

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=94.84  E-value=0.033  Score=47.98  Aligned_cols=29  Identities=17%  Similarity=0.480  Sum_probs=22.2

Q ss_pred             ccccccccc--CCCCceeEEEcccceeeccc
Q 043411          129 MLGSFYQRL--FPSRGINFIHSSYSVHWLSK  157 (242)
Q Consensus       129 vpgSFy~~l--~p~~svdl~~Ss~alhWLs~  157 (242)
                      +.++-.+-|  ||++|+|.++-+-|||=+.+
T Consensus        60 iq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~   90 (193)
T PF07021_consen   60 IQGDLDEGLADFPDQSFDYVILSQTLQAVRR   90 (193)
T ss_pred             EECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence            445555444  89999999999999987655

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PLN02366 spermidine synthase

Probab=94.65  E-value=0.084  Score=48.52  Aligned_cols=20  Identities=20%  Similarity=0.145  Sum_probs=16.0

Q ss_pred             CCccEEeeecCCCCcchHHH
Q 043411           49 PGCFNVADLGCSSGPNTLLV   68 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~   68 (242)
                      +++-+|+++|||.|..+..+
T Consensus        90 ~~pkrVLiIGgG~G~~~rel  109 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREI  109 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHH
Confidence            56789999999999865444

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.21  E-value=0.17  Score=43.56  Aligned_cols=44  Identities=16%  Similarity=0.212  Sum_probs=26.2

Q ss_pred             cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411          137 LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLT  211 (242)
Q Consensus       137 l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~  211 (242)
                      -.+.+.+|+|+|-+.|-.++..                               .=.+.++.-++-|+|||+|+++
T Consensus       131 ~~~~~~fD~I~CRNVlIYF~~~-------------------------------~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  131 DPPFGRFDLIFCRNVLIYFDPE-------------------------------TQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             ------EEEEEE-SSGGGS-HH-------------------------------HHHHHHHHHGGGEEEEEEEEE-
T ss_pred             CcccCCccEEEecCEEEEeCHH-------------------------------HHHHHHHHHHHHcCCCCEEEEe
Confidence            4467789999997666654331                               1123788888999999999994

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=94.11  E-value=0.11  Score=45.75  Aligned_cols=114  Identities=19%  Similarity=0.293  Sum_probs=65.1

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ...++|||||.|...+..+        ++       .|+.-++--+.-.+   .+-+.+.    .......+|+.+.-..
T Consensus        49 ~pi~lEIGfG~G~~l~~~A--------~~-------nP~~nfiGiEi~~~---~v~~~l~----k~~~~~l~Nlri~~~D  106 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMA--------KK-------NPEKNFLGIEIRVP---GVAKALK----KIKELGLKNLRLLCGD  106 (227)
T ss_pred             CcEEEEECCCCCHHHHHHH--------HH-------CCCCCEEEEEEehH---HHHHHHH----HHHHcCCCcEEEEcCC
Confidence            3689999999997766544        11       24443333333321   1111111    1111222366655433


Q ss_pred             c-ccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          131 G-SFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       131 g-SFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      + .+.+.++|++|+|=|+=.+.=-|    |..- -+|.++..    +                .||+.-++=|+|||.+.
T Consensus       107 A~~~l~~~~~~~sl~~I~i~FPDPW----pKkR-H~KRRl~~----~----------------~fl~~~a~~Lk~gG~l~  161 (227)
T COG0220         107 AVEVLDYLIPDGSLDKIYINFPDPW----PKKR-HHKRRLTQ----P----------------EFLKLYARKLKPGGVLH  161 (227)
T ss_pred             HHHHHHhcCCCCCeeEEEEECCCCC----CCcc-ccccccCC----H----------------HHHHHHHHHccCCCEEE
Confidence            3 44577778889999998877777    3310 03444421    1                18888888889999999


Q ss_pred             EE
Q 043411          210 LT  211 (242)
Q Consensus       210 l~  211 (242)
                      +.
T Consensus       162 ~a  163 (227)
T COG0220         162 FA  163 (227)
T ss_pred             EE
Confidence            84

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=94.04  E-value=0.36  Score=45.88  Aligned_cols=28  Identities=14%  Similarity=0.120  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHhhhccCceEEEEec
Q 043411          186 QFQRDFSAFLSLRSEEIVSGGRMFLTFL  213 (242)
Q Consensus       186 q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  213 (242)
                      .+.+++..++..-.+-|+|||.|++...
T Consensus       313 ~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        313 GACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            4456777788888888999999997653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=94.01  E-value=0.41  Score=48.71  Aligned_cols=27  Identities=22%  Similarity=0.384  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHhhhccCceEEEEec
Q 043411          187 FQRDFSAFLSLRSEEIVSGGRMFLTFL  213 (242)
Q Consensus       187 ~~~D~~~FL~~Ra~EL~pGG~lvl~~~  213 (242)
                      ..+|+..++..-.+-|+|||.++++..
T Consensus       631 ~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        631 VQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            346677788777888999999988654

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=93.91  E-value=0.34  Score=40.15  Aligned_cols=37  Identities=27%  Similarity=0.289  Sum_probs=27.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGN  100 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~N  100 (242)
                      +..+++|+|||.|.-|-.+++..              .+.-.|+--|+...
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecc--------------cccceEEEEecccc
Confidence            57999999999999988776322              13478888888754

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=93.89  E-value=0.42  Score=42.97  Aligned_cols=45  Identities=16%  Similarity=0.267  Sum_probs=34.0

Q ss_pred             CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          139 PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       139 p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      -..-+|+|.+.+--.|              ||..-.             ..-+.+||+.-+.-|.|||+|++
T Consensus       163 ~~~~fDiIlcLSiTkW--------------IHLNwg-------------D~GL~~ff~kis~ll~pgGiLvv  207 (288)
T KOG2899|consen  163 IQPEFDIILCLSITKW--------------IHLNWG-------------DDGLRRFFRKISSLLHPGGILVV  207 (288)
T ss_pred             ccccccEEEEEEeeee--------------Eecccc-------------cHHHHHHHHHHHHhhCcCcEEEE
Confidence            4456788888888888              333221             14578899999999999999998

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=93.84  E-value=0.12  Score=45.35  Aligned_cols=35  Identities=14%  Similarity=0.165  Sum_probs=25.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      ++-+|+|+||++|..++.+...+              ++..+++.-|..
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~--------------~~~g~v~tiD~d  102 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALAL--------------PEDGRITAIDID  102 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhC--------------CCCCEEEEEECC
Confidence            46799999999999988776332              123567777765

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=93.70  E-value=0.23  Score=43.08  Aligned_cols=20  Identities=25%  Similarity=0.303  Sum_probs=15.4

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      .-.+|+|+|||||.+|..+.
T Consensus        72 pg~~VLeIGtGsGY~aAlla   91 (209)
T PF01135_consen   72 PGDRVLEIGTGSGYQAALLA   91 (209)
T ss_dssp             TT-EEEEES-TTSHHHHHHH
T ss_pred             CCCEEEEecCCCcHHHHHHH
Confidence            34899999999999998765

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK03612 spermidine synthase; Provisional

Probab=93.30  E-value=0.24  Score=48.64  Aligned_cols=21  Identities=24%  Similarity=0.082  Sum_probs=16.6

Q ss_pred             CCccEEeeecCCCCcchHHHH
Q 043411           49 PGCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~   69 (242)
                      +++-+|+|+|||+|..+..++
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll  316 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVL  316 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHH
Confidence            457899999999998665544

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=93.29  E-value=0.31  Score=47.44  Aligned_cols=129  Identities=12%  Similarity=0.162  Sum_probs=70.1

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|++||.|.-|..+.+.+ .             .+-.|+-||.-.+-...|-..+..+       ...++-+....
T Consensus       114 g~~VLD~CAAPGgKTt~la~~l-~-------------~~g~lvA~D~~~~R~~~L~~nl~r~-------G~~nv~v~~~D  172 (470)
T PRK11933        114 PQRVLDMAAAPGSKTTQIAALM-N-------------NQGAIVANEYSASRVKVLHANISRC-------GVSNVALTHFD  172 (470)
T ss_pred             CCEEEEeCCCccHHHHHHHHHc-C-------------CCCEEEEEeCCHHHHHHHHHHHHHc-------CCCeEEEEeCc
Confidence            5799999999999998876433 1             1357888888754444444443321       12232222111


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccC----CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN----NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      +.=+...+ ++++|.|.-        ++|++-..    +.+..+  ..++..+.+--..|     +.+|..-++-|+|||
T Consensus       173 ~~~~~~~~-~~~fD~ILv--------DaPCSG~G~~rk~p~~~~--~~s~~~v~~l~~lQ-----~~iL~~A~~~LkpGG  236 (470)
T PRK11933        173 GRVFGAAL-PETFDAILL--------DAPCSGEGTVRKDPDALK--NWSPESNLEIAATQ-----RELIESAFHALKPGG  236 (470)
T ss_pred             hhhhhhhc-hhhcCeEEE--------cCCCCCCcccccCHHHhh--hCCHHHHHHHHHHH-----HHHHHHHHHHcCCCc
Confidence            11112222 345677764        66665321    111111  12222232222223     347888888899999


Q ss_pred             eEEEEecccC
Q 043411          207 RMFLTFLGRS  216 (242)
Q Consensus       207 ~lvl~~~g~~  216 (242)
                      +||-+++.-.
T Consensus       237 ~LVYSTCT~~  246 (470)
T PRK11933        237 TLVYSTCTLN  246 (470)
T ss_pred             EEEEECCCCC
Confidence            9999988743

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=93.09  E-value=0.039  Score=49.44  Aligned_cols=125  Identities=12%  Similarity=0.119  Sum_probs=67.2

Q ss_pred             cccccCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHH------------HH
Q 043411            6 VPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSK------------II   73 (242)
Q Consensus         6 ~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~------------ii   73 (242)
                      .|.|.|=.-...|.+|-..+..++..+...+.          .....+|+|+|||+|..|..+.+.            .+
T Consensus         8 ~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~----------~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~   77 (272)
T PRK00274          8 LLERYGHRAKKSLGQNFLIDENILDKIVDAAG----------PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLA   77 (272)
T ss_pred             HHHHcCCCCCcccCcCcCCCHHHHHHHHHhcC----------CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHH
Confidence            45555444455666666555555544333221          123468999999999999988873            33


Q ss_pred             HHHHHHHhhhcCCCCceEEEecCCCCCchHHH-----hhcCchhHH-h-hhh---cCC-CCceeeccccccccccC-CCC
Q 043411           74 DSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSI-----FESLPDFYE-R-IKK---DKF-GPCFIAGMLGSFYQRLF-PSR  141 (242)
Q Consensus        74 ~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~l-----f~~l~~~~~-~-l~~---~~~-~~~f~~~vpgSFy~~l~-p~~  141 (242)
                      +.+++...    . +.++++..|...-++..+     +.++|-... . +..   ... -...+..+...|-+|+. .++
T Consensus        78 ~~~~~~~~----~-~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~a~pg  152 (272)
T PRK00274         78 PILAETFA----E-DNLTIIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIVAKPG  152 (272)
T ss_pred             HHHHHhhc----c-CceEEEEChhhcCCHHHcCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHcCCCC
Confidence            33333221    1 358888888765555432     223331110 0 100   111 12344567778878886 556


Q ss_pred             ceeE
Q 043411          142 GINF  145 (242)
Q Consensus       142 svdl  145 (242)
                      +-+.
T Consensus       153 ~~~y  156 (272)
T PRK00274        153 SKAY  156 (272)
T ss_pred             Cccc
Confidence            5553

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=92.90  E-value=0.32  Score=44.36  Aligned_cols=41  Identities=12%  Similarity=0.122  Sum_probs=29.3

Q ss_pred             CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411          140 SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLT  211 (242)
Q Consensus       140 ~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~  211 (242)
                      .+.+|+|+|-+.+..++.                               .+-.+.++.-++-|+|||+|+++
T Consensus       221 ~~~fD~I~cRNvliyF~~-------------------------------~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        221 PGPFDAIFCRNVMIYFDK-------------------------------TTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             CCCcceeeHhhHHhcCCH-------------------------------HHHHHHHHHHHHHhCCCcEEEEe
Confidence            577888888776665433                               12334777778889999999874

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=92.77  E-value=0.13  Score=45.83  Aligned_cols=29  Identities=7%  Similarity=0.087  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHhhhccCceEEEEecccCCC
Q 043411          190 DFSAFLSLRSEEIVSGGRMFLTFLGRSIA  218 (242)
Q Consensus       190 D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~  218 (242)
                      ++..++-.-+.-|+|||.++++.=.-+.+
T Consensus       203 ~Le~~~~~aa~~L~~gGlfaFSvE~l~~~  231 (287)
T COG4976         203 ALEGLFAGAAGLLAPGGLFAFSVETLPDD  231 (287)
T ss_pred             chhhHHHHHHHhcCCCceEEEEecccCCC
Confidence            44457888899999999999987655443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=92.22  E-value=0.79  Score=40.40  Aligned_cols=132  Identities=12%  Similarity=0.067  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCch
Q 043411           32 AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPD  111 (242)
Q Consensus        32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~  111 (242)
                      ..|.|.+.+.++..   +...||++.|||.|.+...+.+        +         -..|+-.|+...=-...|+....
T Consensus        28 pnp~L~~~~~~l~~---~~~~rvLvPgCGkg~D~~~LA~--------~---------G~~V~GvDlS~~Ai~~~~~e~~~   87 (226)
T PRK13256         28 PNEFLVKHFSKLNI---NDSSVCLIPMCGCSIDMLFFLS--------K---------GVKVIGIELSEKAVLSFFSQNTI   87 (226)
T ss_pred             CCHHHHHHHHhcCC---CCCCeEEEeCCCChHHHHHHHh--------C---------CCcEEEEecCHHHHHHHHHHcCC
Confidence            45666666554321   3457999999999999887762        1         14566666653222333332110


Q ss_pred             hHHhhhh----cCCCCceeeccccccccccCC---CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHH
Q 043411          112 FYERIKK----DKFGPCFIAGMLGSFYQRLFP---SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFW  184 (242)
Q Consensus       112 ~~~~l~~----~~~~~~f~~~vpgSFy~~l~p---~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~  184 (242)
                      ... +..    ......-+.-+-|+|++--.+   -+.+|+|+=..+++=|   |+                 +.+..|+
T Consensus        88 ~~~-~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al---pp-----------------~~R~~Y~  146 (226)
T PRK13256         88 NYE-VIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL---PN-----------------DLRTNYA  146 (226)
T ss_pred             Ccc-eecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC---CH-----------------HHHHHHH
Confidence            000 000    000111122344577652211   2467888776666643   22                 3344454


Q ss_pred             HHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411          185 EQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR  215 (242)
Q Consensus       185 ~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  215 (242)
                      +           .-++=|+|||.+++.++-.
T Consensus       147 ~-----------~l~~lL~pgg~llll~~~~  166 (226)
T PRK13256        147 K-----------MMLEVCSNNTQILLLVMEH  166 (226)
T ss_pred             H-----------HHHHHhCCCcEEEEEEEec
Confidence            4           3344469999999999854

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=90.55  E-value=0.46  Score=38.21  Aligned_cols=40  Identities=15%  Similarity=0.267  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHH
Q 043411           29 MSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVS   70 (242)
Q Consensus        29 ~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~   70 (242)
                      ++++..++...++...  ....+.+|+|+|||.|..|+.+..
T Consensus         6 i~~~~~~i~~~~~~~~--~~~~~~~vvD~GsG~GyLs~~La~   45 (141)
T PF13679_consen    6 IERMAELIDSLCDSVG--ESKRCITVVDLGSGKGYLSRALAH   45 (141)
T ss_pred             HHHHHHHHHHHHHHhh--ccCCCCEEEEeCCChhHHHHHHHH
Confidence            3455666666555431  124589999999999999998874

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=90.34  E-value=0.97  Score=40.79  Aligned_cols=20  Identities=25%  Similarity=0.233  Sum_probs=17.4

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      +..+++|+|.|.|.-|..+.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~  113 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLA  113 (265)
T ss_pred             cCCceEEecCCCcHHHHHHH
Confidence            46889999999999988775

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=90.16  E-value=2.1  Score=38.47  Aligned_cols=103  Identities=19%  Similarity=0.286  Sum_probs=64.9

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceeecc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      -.||+|-|.|||..|..+...+ .             |+-+|+-=|.-. ||-..-+. +..+  .+     .+. +.-.
T Consensus        95 g~rVlEAGtGSG~lt~~La~~v-g-------------~~G~v~tyE~r~-d~~k~A~~Nl~~~--~l-----~d~-v~~~  151 (256)
T COG2519          95 GSRVLEAGTGSGALTAYLARAV-G-------------PEGHVTTYEIRE-DFAKTARENLSEF--GL-----GDR-VTLK  151 (256)
T ss_pred             CCEEEEcccCchHHHHHHHHhh-C-------------CCceEEEEEecH-HHHHHHHHHHHHh--cc-----ccc-eEEE
Confidence            4899999999999999776433 1             234444333332 55444332 1111  11     111 2222


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      -|+..+-.++. .+|.++=        ++|.+-                              +.|..-++.|+|||.++
T Consensus       152 ~~Dv~~~~~~~-~vDav~L--------Dmp~PW------------------------------~~le~~~~~Lkpgg~~~  192 (256)
T COG2519         152 LGDVREGIDEE-DVDAVFL--------DLPDPW------------------------------NVLEHVSDALKPGGVVV  192 (256)
T ss_pred             ecccccccccc-ccCEEEE--------cCCChH------------------------------HHHHHHHHHhCCCcEEE
Confidence            37888888887 8888876        666631                              17889999999999999


Q ss_pred             EEeccc
Q 043411          210 LTFLGR  215 (242)
Q Consensus       210 l~~~g~  215 (242)
                      +-.+.-
T Consensus       193 ~y~P~v  198 (256)
T COG2519         193 VYSPTV  198 (256)
T ss_pred             EEcCCH
Confidence            866654

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=90.05  E-value=1.4  Score=38.82  Aligned_cols=134  Identities=19%  Similarity=0.223  Sum_probs=79.9

Q ss_pred             ccccCCCCcchHHHhhHHHHHHHHH-------HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHH
Q 043411            7 PCMNGGGGETSYAKNSNIQRTVMSK-------AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKL   79 (242)
Q Consensus         7 ~~M~gG~g~~sY~~nS~~Q~~~~~~-------~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~   79 (242)
                      +...||  -..|-..|.. -+...+       +..+|.+.....  ...+..++++|+||=+..|.+.-.          
T Consensus         6 i~~~GG--l~~YQ~AS~~-Gq~~~RGGdSSK~lv~wL~~~~~~~--~~~~~~lrlLEVGals~~N~~s~~----------   70 (219)
T PF11968_consen    6 IEALGG--LEAYQRASKQ-GQSKDRGGDSSKWLVEWLKELGVRP--KNGRPKLRLLEVGALSTDNACSTS----------   70 (219)
T ss_pred             HHHccC--HHHHHHHHHh-cCCCCCCCchhHHHHHHhhhhcccc--ccccccceEEeecccCCCCccccc----------
Confidence            444555  6777666654 222222       444444433211  112346999999999988865321          


Q ss_pred             HhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCC---CCceeEEEcccceeecc
Q 043411           80 YHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFP---SRGINFIHSSYSVHWLS  156 (242)
Q Consensus        80 ~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p---~~svdl~~Ss~alhWLs  156 (242)
                              +.+.|.--||-+.+        +.   -             .--+|.++-.|   .+.+|+|..|-.|.+  
T Consensus        71 --------~~fdvt~IDLns~~--------~~---I-------------~qqDFm~rplp~~~~e~FdvIs~SLVLNf--  116 (219)
T PF11968_consen   71 --------GWFDVTRIDLNSQH--------PG---I-------------LQQDFMERPLPKNESEKFDVISLSLVLNF--  116 (219)
T ss_pred             --------CceeeEEeecCCCC--------CC---c-------------eeeccccCCCCCCcccceeEEEEEEEEee--
Confidence                    24667777886311        11   1             12277777665   779999999888877  


Q ss_pred             cCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce-----EEEEecccCC
Q 043411          157 KVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR-----MFLTFLGRSI  217 (242)
Q Consensus       157 ~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~-----lvl~~~g~~~  217 (242)
                       +|.+..                    +       -..|++-.+-|+|+|.     |++.++-..-
T Consensus       117 -VP~p~~--------------------R-------G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv  154 (219)
T PF11968_consen  117 -VPDPKQ--------------------R-------GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV  154 (219)
T ss_pred             -CCCHHH--------------------H-------HHHHHHHHHHhCCCCccCcceEEEEeCchHh
Confidence             454210                    0       1155555666699999     9999886643

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=89.83  E-value=3.6  Score=35.70  Aligned_cols=17  Identities=29%  Similarity=0.319  Sum_probs=13.0

Q ss_pred             ccEEeeecCCCCcchHH
Q 043411           51 CFNVADLGCSSGPNTLL   67 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~   67 (242)
                      ..+|+|||||.|..-..
T Consensus        68 A~~VlDLGtGNG~~L~~   84 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQ   84 (227)
T ss_pred             ccceeeccCCchHHHHH
Confidence            34999999999965433

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=89.33  E-value=0.35  Score=44.29  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHH
Q 043411           30 SKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        30 ~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ..++.+|++..        .+.-+|+|+|||||-.++...
T Consensus       149 ~lcl~~l~~~~--------~~g~~vLDvG~GSGILaiaA~  180 (295)
T PF06325_consen  149 RLCLELLEKYV--------KPGKRVLDVGCGSGILAIAAA  180 (295)
T ss_dssp             HHHHHHHHHHS--------STTSEEEEES-TTSHHHHHHH
T ss_pred             HHHHHHHHHhc--------cCCCEEEEeCCcHHHHHHHHH
Confidence            44555555552        123599999999998888654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=88.99  E-value=2.3  Score=40.20  Aligned_cols=63  Identities=16%  Similarity=0.059  Sum_probs=41.6

Q ss_pred             CCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceE
Q 043411           12 GGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQ   91 (242)
Q Consensus        12 G~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~q   91 (242)
                      ..++..|+-|...-+.+...+...+...         ....+|+|++||+|..++.+....               +.-.
T Consensus        28 ~~~~vFyqp~~~~nrdl~~~v~~~~~~~---------~~~~~vLDl~aGsG~~~l~~a~~~---------------~~~~   83 (382)
T PRK04338         28 SWAPVFYNPRMELNRDISVLVLRAFGPK---------LPRESVLDALSASGIRGIRYALET---------------GVEK   83 (382)
T ss_pred             CCCCeeeCccccchhhHHHHHHHHHHhh---------cCCCEEEECCCcccHHHHHHHHHC---------------CCCE
Confidence            3456788888777666555554444210         023689999999999999876332               1246


Q ss_pred             EEecCCC
Q 043411           92 VFLNDLP   98 (242)
Q Consensus        92 v~~nDLp   98 (242)
                      |+.||.-
T Consensus        84 V~a~Din   90 (382)
T PRK04338         84 VTLNDIN   90 (382)
T ss_pred             EEEEeCC
Confidence            8888885

>TIGR00478 tly hemolysin TlyA family protein

Probab=88.06  E-value=0.65  Score=40.91  Aligned_cols=20  Identities=30%  Similarity=0.184  Sum_probs=17.2

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      +.-+|+|+|||+|..|..++
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~   94 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCAL   94 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHH
Confidence            34689999999999998776

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=87.40  E-value=0.78  Score=41.85  Aligned_cols=52  Identities=15%  Similarity=0.247  Sum_probs=34.0

Q ss_pred             CccEEeeecCCCCcchHHHHHH------------HHHHHHHHHhhhcCCCCceEEEecCCCCCch
Q 043411           50 GCFNVADLGCSSGPNTLLVVSK------------IIDSIHKLYHQVNKKLPEFQVFLNDLPGNDF  102 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~------------ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDF  102 (242)
                      ..-+|+|+|||+|..|..+++.            .++.++++....+. .+.++++..|....|+
T Consensus        36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-~~~v~ii~~Dal~~~~   99 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-ASKLEVIEGDALKTEF   99 (294)
T ss_pred             CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECCHhhhcc
Confidence            3468999999999999988764            34555544322111 2348888888754444

>PRK04148 hypothetical protein; Provisional

Probab=87.40  E-value=1.9  Score=35.08  Aligned_cols=19  Identities=11%  Similarity=-0.071  Sum_probs=14.1

Q ss_pred             CccEEeeecCCCCc-chHHH
Q 043411           50 GCFNVADLGCSSGP-NTLLV   68 (242)
Q Consensus        50 ~~~~IaDlGCs~G~-ns~~~   68 (242)
                      +..+|+|+|||+|. .+..+
T Consensus        16 ~~~kileIG~GfG~~vA~~L   35 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKL   35 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHH
Confidence            35789999999996 44433

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=87.06  E-value=0.37  Score=41.59  Aligned_cols=18  Identities=28%  Similarity=0.283  Sum_probs=15.4

Q ss_pred             ccEEeeecCCCCcchHHH
Q 043411           51 CFNVADLGCSSGPNTLLV   68 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~   68 (242)
                      .-+|+|+|||||..++..
T Consensus        46 g~~V~DlG~GTG~La~ga   63 (198)
T COG2263          46 GKTVLDLGAGTGILAIGA   63 (198)
T ss_pred             CCEEEEcCCCcCHHHHHH
Confidence            457999999999998854

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=87.06  E-value=0.77  Score=41.92  Aligned_cols=19  Identities=26%  Similarity=0.177  Sum_probs=16.8

Q ss_pred             ccEEeeecCCCCcchHHHH
Q 043411           51 CFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~   69 (242)
                      ..+|+|+|||+|..++.+.
T Consensus       174 ~~~VLDl~cG~G~~sl~la  192 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCA  192 (315)
T ss_pred             CCEEEEccCCCCHHHHHHH
Confidence            4789999999999998776

>TIGR00755 ksgA dimethyladenosine transferase

Probab=86.14  E-value=0.93  Score=39.93  Aligned_cols=22  Identities=18%  Similarity=0.119  Sum_probs=18.9

Q ss_pred             CccEEeeecCCCCcchHHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVSK   71 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~   71 (242)
                      ..-+|+|+|||+|..|..+.+.
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~   50 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKR   50 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHh
Confidence            4579999999999999988753

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=85.37  E-value=8.5  Score=36.01  Aligned_cols=133  Identities=14%  Similarity=0.119  Sum_probs=77.0

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      --+|+|+=++.|+=|..+.+..    .        + ....|+-+|...+-...|..++..+       ...++-+.-..
T Consensus       157 ge~VlD~cAAPGGKTthla~~~----~--------~-~~~iV~A~D~~~~Rl~~l~~nl~Rl-------G~~nv~~~~~d  216 (355)
T COG0144         157 GERVLDLCAAPGGKTTHLAELM----E--------N-EGAIVVAVDVSPKRLKRLRENLKRL-------GVRNVIVVNKD  216 (355)
T ss_pred             cCEEEEECCCCCCHHHHHHHhc----C--------C-CCceEEEEcCCHHHHHHHHHHHHHc-------CCCceEEEecc
Confidence            5899999999999999887433    1        1 1256799999865555555544321       22333333333


Q ss_pred             cccccccCCCC-ceeEEEcccceeecccCCCcccC----CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          131 GSFYQRLFPSR-GINFIHSSYSVHWLSKVPENLEN----NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       131 gSFy~~l~p~~-svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      +..+....+.+ .+|-|.-        +.|++-..    |.+.-|-.  ++..+.+.-.-|-     ++|..=.+=|+||
T Consensus       217 ~~~~~~~~~~~~~fD~iLl--------DaPCSg~G~irr~Pd~~~~~--~~~~i~~l~~lQ~-----~iL~~a~~~lk~G  281 (355)
T COG0144         217 ARRLAELLPGGEKFDRILL--------DAPCSGTGVIRRDPDVKWRR--TPEDIAELAKLQK-----EILAAALKLLKPG  281 (355)
T ss_pred             cccccccccccCcCcEEEE--------CCCCCCCcccccCccccccC--CHHHHHHHHHHHH-----HHHHHHHHhcCCC
Confidence            44444444444 4777765        77876542    11111211  1122222222233     3777777778999


Q ss_pred             ceEEEEecccCCC
Q 043411          206 GRMFLTFLGRSIA  218 (242)
Q Consensus       206 G~lvl~~~g~~~~  218 (242)
                      |.|+-+++....+
T Consensus       282 G~LVYSTCS~~~e  294 (355)
T COG0144         282 GVLVYSTCSLTPE  294 (355)
T ss_pred             CEEEEEccCCchh
Confidence            9999999987554

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=84.46  E-value=2.5  Score=37.69  Aligned_cols=22  Identities=18%  Similarity=0.243  Sum_probs=18.6

Q ss_pred             CccEEeeecCCCCcchHHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVSK   71 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~   71 (242)
                      ++-+|+|+|++.|..|+.++..
T Consensus        79 ~ak~iLEiGT~~GySal~la~a  100 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALA  100 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhh
Confidence            4679999999999999977633

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=84.12  E-value=0.91  Score=35.76  Aligned_cols=42  Identities=17%  Similarity=0.240  Sum_probs=32.2

Q ss_pred             eeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411          143 INFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLT  211 (242)
Q Consensus       143 vdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~  211 (242)
                      .|+|.+.+...|              ||             ......-+.+|++.-+.-|+|||.|++=
T Consensus         2 yDvilclSVtkW--------------IH-------------Ln~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    2 YDVILCLSVTKW--------------IH-------------LNWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             EEEEEEES-HHH--------------HH-------------HHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEEEEeeEE--------------EE-------------ecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            588888888888              22             2233456888999999999999999983

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=84.09  E-value=3.3  Score=38.16  Aligned_cols=54  Identities=15%  Similarity=0.271  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           30 SKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        30 ~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      ..+..+|++++..+..  ...+++|+|+=||+|+-       +++++.+.     ...+ .++.++|..
T Consensus       117 ~~l~~~i~~ai~~L~~--~g~pvrIlDIAaG~GRY-------vlDal~~~-----~~~~-~~i~LrDys  170 (311)
T PF12147_consen  117 VHLEELIRQAIARLRE--QGRPVRILDIAAGHGRY-------VLDALEKH-----PERP-DSILLRDYS  170 (311)
T ss_pred             HHHHHHHHHHHHHHHh--cCCceEEEEeccCCcHH-------HHHHHHhC-----CCCC-ceEEEEeCC
Confidence            3456677777776643  25689999999999965       44655554     1113 688888875

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=83.09  E-value=5.1  Score=28.91  Aligned_cols=25  Identities=28%  Similarity=0.206  Sum_probs=18.9

Q ss_pred             HHHHHHhhhccCceEEEEecccCCC
Q 043411          194 FLSLRSEEIVSGGRMFLTFLGRSIA  218 (242)
Q Consensus       194 FL~~Ra~EL~pGG~lvl~~~g~~~~  218 (242)
                      .+....+-++|||.+++........
T Consensus       137 ~~~~~~~~l~~~g~~~~~~~~~~~~  161 (257)
T COG0500         137 ALRELLRVLKPGGRLVLSDLLRDGL  161 (257)
T ss_pred             HHHHHHHhcCCCcEEEEEeccCCCC
Confidence            5566666689999999998876543

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=82.95  E-value=0.69  Score=41.02  Aligned_cols=48  Identities=13%  Similarity=0.069  Sum_probs=31.2

Q ss_pred             CccEEeeecCCCCcchHHHHHH------------HHHHHHHHHhhhcCCCCceEEEecCCCCCc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSK------------IIDSIHKLYHQVNKKLPEFQVFLNDLPGND  101 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~------------ii~~i~~~~~~~~~~~~~~qv~~nDLp~ND  101 (242)
                      +.-+|+|+|||+|..|..+.+.            .++.+++....    .+.+.++..|.-..+
T Consensus        29 ~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~----~~~v~ii~~D~~~~~   88 (258)
T PRK14896         29 DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA----AGNVEIIEGDALKVD   88 (258)
T ss_pred             CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc----CCCEEEEEeccccCC
Confidence            3478999999999999988864            33444433211    234777777764433

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=82.80  E-value=8.2  Score=34.46  Aligned_cols=23  Identities=22%  Similarity=0.206  Sum_probs=16.7

Q ss_pred             CccEEeeecCCCCcchHHHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKI   72 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~i   72 (242)
                      .--+|+|-|.|||..|..+...+
T Consensus        40 pG~~VlEaGtGSG~lt~~l~r~v   62 (247)
T PF08704_consen   40 PGSRVLEAGTGSGSLTHALARAV   62 (247)
T ss_dssp             TT-EEEEE--TTSHHHHHHHHHH
T ss_pred             CCCEEEEecCCcHHHHHHHHHHh
Confidence            35899999999999999887554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=82.79  E-value=1.6  Score=37.56  Aligned_cols=19  Identities=21%  Similarity=0.013  Sum_probs=15.7

Q ss_pred             ccEEeeecCCCCcchHHHH
Q 043411           51 CFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~   69 (242)
                      ..+|+|+|||+|..++..+
T Consensus        54 ~~~vLDl~~GsG~l~l~~l   72 (199)
T PRK10909         54 DARCLDCFAGSGALGLEAL   72 (199)
T ss_pred             CCEEEEcCCCccHHHHHHH
Confidence            3599999999998887544

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=81.63  E-value=1.3  Score=38.62  Aligned_cols=20  Identities=20%  Similarity=0.267  Sum_probs=17.3

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ..-+|+|+|||||.+|..+.
T Consensus        72 ~g~~VLEIGtGsGY~aAvla   91 (209)
T COG2518          72 PGDRVLEIGTGSGYQAAVLA   91 (209)
T ss_pred             CCCeEEEECCCchHHHHHHH
Confidence            46899999999999988664

>PLN02476 O-methyltransferase

Probab=80.55  E-value=6.4  Score=35.81  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=18.4

Q ss_pred             CccEEeeecCCCCcchHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVS   70 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~   70 (242)
                      ++-+|+|+||++|..|+.+..
T Consensus       118 ~ak~VLEIGT~tGySal~lA~  138 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVAL  138 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHH
Confidence            467999999999999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	242
1m6e_X	359	Crystal Structure Of Salicylic Acid Carboxyl Methyl		5e-63
2eg5_A	372	The Structure Of Xanthosine Methyltransferase Lengt		3e-52
2efj_A	384	The Structure Of 1,7 Dimethylxanthine Methyltransfe		2e-50
3b5i_A	374	Crystal Structure Of Indole-3-Acetic Acid Methyltra		5e-42

>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl Methyltransferase (Samt) Length = 359

Iteration: 1
 Score =  237 bits (604), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 119/244 (48%), Positives = 162/244 (66%), Gaps = 7/244 (2%)
Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSS-SFPGCFNVADLGC 59
           M V  V  M GG GE SYA NS IQR V+S   P  E  I  ++S  +      +ADLGC
Sbjct: 1   MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60
Query: 60  SSGPNTLLVVSKIIDSIHKLYHQVNKK-LPEFQVFLNDLPGNDFNSIFESLPDFYERIKK 118
           SSGPN L  V+++I ++ +L  ++ ++  PE+Q+FLNDLPGNDFN+IF SLP     I+ 
Sbjct: 61  SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP-----IEN 115
Query: 119 DKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPS 178
           D  G CFI G+ GSFY RLFP   ++FIHSSYS+ WLS+VP  +E+NK +IY+  + P S
Sbjct: 116 DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQS 175
Query: 179 VCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQ 238
           V  A+++QFQ D + FL  R++E+V GGRM LT LGR   D +S +CC +W+LL  +L Q
Sbjct: 176 VLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQ 235
Query: 239 LANE 242
           + +E
Sbjct: 236 MVSE 239

>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase Length = 372

Iteration: 1
 Score =  201 bits (511), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 107/251 (42%), Positives = 154/251 (61%), Gaps = 15/251 (5%)
Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPG---CFNVADL 57
           M +  V  MNGG G+TSYAKNS   + V++K  P LE+ ++++  ++ P    C  VADL
Sbjct: 1   MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60
Query: 58  GCSSGPNTLLVVSKIIDSIHKLYHQVNKKL--PEFQVFLNDLPGNDFNSIFESLPDFYER 115
           GC+SGPNTLL V  I+ SI K+  +   +L  P  Q+FLNDL  NDFNS+F+ LP FY +
Sbjct: 61  GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRK 120
Query: 116 IKKD---KFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENL------ENNK 166
           ++K+   K G C I  M GSFY RLFP   ++F+HS Y + WLS+VP  L        NK
Sbjct: 121 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGTNK 180
Query: 167 RDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCC 226
             IY +K+S   V +A+ +QF +DF+ FL + SEE+ S GRM LT + + + +  +++  
Sbjct: 181 GSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGV-ELDARNAI 239
Query: 227 CLWELLTKSLI 237
            L E+    L+
Sbjct: 240 DLLEMAINDLV 250

>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase Length = 384

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/227 (45%), Positives = 143/227 (62%), Gaps = 15/227 (6%)
Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPG---CFNVADL 57
           M +  V  MNGG G+TSYAKNS+    ++ +  P LE+ I+++  ++ P    CF V DL
Sbjct: 1   MELQEVLHMNGGEGDTSYAKNSSYNLFLI-RVKPVLEQCIQELLRANLPNINKCFKVGDL 59
Query: 58  GCSSGPNTLLVVSKIIDSIHKLYHQVNKKL--PEFQVFLNDLPGNDFNSIFESLPDFYER 115
           GC+SGPNT   V  I+ SI K+  +   +L  P  Q+FLNDL  NDFNS+F+ LP FY  
Sbjct: 60  GCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRN 119
Query: 116 IKKD---KFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN------NK 166
           ++K+   K G C I  M GSFY RLFP   ++F+HS Y +HWLS+VP  L        NK
Sbjct: 120 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNK 179
Query: 167 RDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFL 213
             IY +K+S P + +A+ +QF +DF+ FL + SEE++S GRM LTF+
Sbjct: 180 GCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFI 226

>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid Methyltransferase Length = 374

Iteration: 1
 Score =  167 bits (423), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 91/233 (39%), Positives = 128/233 (54%), Gaps = 13/233 (5%)
Query: 9   MNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMF--SSSFPGCFNVADLGCSSGPNTL 66
           M GG G+ SYA NS  Q          LEET++++   SS+ P  F   DLGCSSG NT+
Sbjct: 9   MKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTV 68
Query: 67  LVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFY------ERIKKDK 120
            ++  I+  I K +       PEF  F +DLP NDFN++F+ LP         E +  D 
Sbjct: 69  HIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADG 128
Query: 121 FGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIY-----ITKSS 175
               F+AG+ GSFY+RLFP+R I+F HS++S+HWLS+VPE++ + +   Y         +
Sbjct: 129 NRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGA 188
Query: 176 PPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCL 228
                 A+  QFQ D + FL  R+ E+  GG MFL  LGR+  DP+ +    L
Sbjct: 189 GEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGL 241

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	2e-86
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	3e-83
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	3e-81
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359

 Score =  259 bits (663), Expect = 2e-86
 Identities = 118/244 (48%), Positives = 160/244 (65%), Gaps = 7/244 (2%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSS-SFPGCFNVADLGC 59
           M V  V  M GG GE SYA NS IQR V+S   P  E  I  ++S  +      +ADLGC
Sbjct: 1   MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60

Query: 60  SSGPNTLLVVSKIIDSIHKLYHQVNKKL-PEFQVFLNDLPGNDFNSIFESLPDFYERIKK 118
           SSGPN L  V+++I ++ +L  ++ ++  PE+Q+FLNDLPGNDFN+IF SLP        
Sbjct: 61  SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE-----N 115

Query: 119 DKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPS 178
           D  G CFI G+ GSFY RLFP   ++FIHSSYS+ WLS+VP  +E+NK +IY+  + P S
Sbjct: 116 DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQS 175

Query: 179 VCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQ 238
           V  A+++QFQ D + FL  R++E+V GGRM LT LGR   D +S +CC +W+LL  +L Q
Sbjct: 176 VLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQ 235

Query: 239 LANE 242
           + +E
Sbjct: 236 MVSE 239

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Length = 374

 Score =  252 bits (644), Expect = 3e-83
 Identities = 92/258 (35%), Positives = 135/258 (52%), Gaps = 17/258 (6%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMF--SSSFPGCFNVADLG 58
           M +  +  M GG G+ SYA NS  Q          LEET++++   SS+ P  F   DLG
Sbjct: 1   MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLG 60

Query: 59  CSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKK 118
           CSSG NT+ ++  I+  I K +       PEF  F +DLP NDFN++F+ LP        
Sbjct: 61  CSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCM 120

Query: 119 DK------FGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN------NK 166
           ++          F+AG+ GSFY+RLFP+R I+F HS++S+HWLS+VPE++ +      N+
Sbjct: 121 EECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNR 180

Query: 167 RDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCC 226
             ++I   +      A+  QFQ D + FL  R+ E+  GG MFL  LGR+  DP+ +   
Sbjct: 181 GRVFIH-GAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGA 239

Query: 227 C--LWELLTKSLIQLANE 242
                     +   L  E
Sbjct: 240 GLLFGTHFQDAWDDLVRE 257

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384

 Score =  247 bits (631), Expect = 3e-81
 Identities = 109/256 (42%), Positives = 150/256 (58%), Gaps = 19/256 (7%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPG---CFNVADL 57
           M +  V  MNGG G+TSYAKNS+     + +  P LE+ I+++  ++ P    CF V DL
Sbjct: 1   MELQEVLHMNGGEGDTSYAKNSSYNL-FLIRVKPVLEQCIQELLRANLPNINKCFKVGDL 59

Query: 58  GCSSGPNTLLVVSKIIDSIHKLYHQVNKKL--PEFQVFLNDLPGNDFNSIFESLPDFYER 115
           GC+SGPNT   V  I+ SI K+  +   +L  P  Q+FLNDL  NDFNS+F+ LP FY  
Sbjct: 60  GCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRN 119

Query: 116 IKK---DKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN------NK 166
           ++K    K G C I  M GSFY RLFP   ++F+HS Y +HWLS+VP  L        NK
Sbjct: 120 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNK 179

Query: 167 RDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCC 226
             IY +K+S P + +A+ +QF +DF+ FL + SEE++S GRM LTF+ +        D  
Sbjct: 180 GCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICK----EDEFDHP 235

Query: 227 CLWELLTKSLIQLANE 242
              +LL  S+  L  E
Sbjct: 236 NSMDLLEMSINDLVIE 251

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 33/245 (13%), Positives = 69/245 (28%), Gaps = 80/245 (32%)

Query: 20  KNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKL 79
            +++I   ++S  W  + ++   +  +        + +      +T+        SI  +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNK---LHKYSLVEKQPKESTI--------SIPSI 431

Query: 80  YHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQ---- 135
           Y ++  KL                ++  S+ D Y   K           +   FY     
Sbjct: 432 YLELKVKLENEY------------ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 136 -----------RLFPSRGINF-------IHSSYSVHWLSKVPENLENNK--RDIYITKSS 175
                       LF    ++F        H S + +    +   L+  K  +  YI  + 
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-YICDND 538

Query: 176 PPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKS 235
           P       +E+       FL    E ++                  SK            
Sbjct: 539 P------KYERLVNAILDFLPKIEENLI-----------------CSKYTD--------- 566

Query: 236 LIQLA 240
           L+++A
Sbjct: 567 LLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 40/254 (15%), Positives = 76/254 (29%), Gaps = 53/254 (20%)

Query: 25  QRTVMSKAWPFLEETIKDMFSSSFPGCFNVADL---GCSSGPNTLLVVSKIIDSIH---- 77
             ++   +     + +K +    +  C    DL     ++ P     +S I +SI     
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLK-YLDC-RPQDLPREVLTTNP---RRLSIIAESIRDGLA 342

Query: 78  --KLYHQVN-KKLPE-FQVFLNDLPGNDFNSIFESLPDFYERIK-----------KDKFG 122
               +  VN  KL    +  LN L   ++  +F+ L  F                     
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 123 PCFIAGMLGSFYQRLF----PSRGINFIHSSYSVHWLSKVPENLENNKR--DIY-ITKSS 175
              +  ++   ++       P      I S Y +    K+      ++   D Y I K+ 
Sbjct: 403 DVMV--VVNKLHKYSLVEKQPKESTISIPSIY-LELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 176 PPSVCQAFWEQFQRD--FSAFLS------LRSEEIVSGGRMFL--TFLGRSIADPSSKDC 225
                   +     D  F + +          E +     +FL   FL + I   S+   
Sbjct: 460 DSDDLIPPYL----DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515

Query: 226 CCLWELLTKSLIQL 239
                 +  +L QL
Sbjct: 516 AS--GSILNTLQQL 527

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 36/173 (20%)

Query: 77  HKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQR 136
           H  +H ++ +  E Q    D+           L  F +    +     F    +    + 
Sbjct: 1   HHHHHHMDFETGEHQYQYKDI-----------LSVFEDAFVDN-----FDCKDVQDMPKS 44

Query: 137 LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQ-FQRDFSAFL 195
           +     I+ I             + +    R  +   S    + Q F E+  + ++  FL
Sbjct: 45  ILSKEEIDHII---------MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FL 94

Query: 196 --SLRSEEIVSGG--RMFLTFLGRSIADPS--SKDCCCLWEL---LTKSLIQL 239
              +++E+       RM++    R   D    +K      +    L ++L++L
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	100.0
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	100.0
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	100.0
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.92
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.89
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.89
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.79
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.79
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.77
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.75
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.73
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.71
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.69
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.67
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.65
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.65
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.64
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.63
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.62
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.6
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.59
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.59
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.58
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.58
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.57
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.55
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.55
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.54
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.53
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.53
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.52
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.52
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.52
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.52
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.52
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.51
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.51
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.51
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.5
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.5
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.5
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.49
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.49
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.47
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.47
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.47
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.47
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.47
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.47
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.46
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.46
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.46
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.46
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.45
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.44
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.44
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.42
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.42
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.42
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.42
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.41
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.41
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.41
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.4
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.4
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.4
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.39
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.39
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.36
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.34
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.34
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.33
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.32
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.32
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.31
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.3
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.3
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.3
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.29
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.29
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.29
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.29
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.28
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.27
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.25
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.25
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.25
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.24
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.24
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.23
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.23
3ocj_A	305	Putative exported protein; structural genomics, PS	98.22
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.21
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.2
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.18
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.18
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.17
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.17
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.16
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.16
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.15
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.14
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.12
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.12
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.09
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.08
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.08
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.08
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.08
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.05
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.04
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.02
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	97.99
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.98
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.97
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.97
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.96
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.96
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.95
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	97.93
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.93
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.92
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.92
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.89
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.88
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.88
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.87
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.86
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.85
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.85
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.82
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.82
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.81
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.81
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	97.79
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.79
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.78
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.78
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.78
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.77
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.73
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	97.72
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.72
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.7
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.7
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.68
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.68
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.67
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.67
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.64
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.63
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.63
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.62
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.6
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.6
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.6
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.6
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.59
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.58
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.54
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.52
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.52
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.51
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.5
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.49
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.48
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.48
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.45
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.45
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.44
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.44
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.43
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.42
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.41
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.4
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.39
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.39
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.39
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.38
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.38
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.37
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.36
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.34
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.33
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.32
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.32
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.31
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.31
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.31
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.3
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.29
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.29
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.25
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.2
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.18
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.16
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.14
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.14
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.13
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.12
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.11
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.09
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.06
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.05
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.04
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.04
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.97
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.97
2o07_A	304	Spermidine synthase; structural genomics, structur	96.95
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.93
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.91
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	96.9
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.87
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.87
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	96.86
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.86
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.85
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.85
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.82
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	96.81
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	96.79
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.79
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.79
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.72
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	96.72
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	96.68
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	96.58
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.5
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.49
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.44
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	96.41
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	96.39
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.34
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.33
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	96.32
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	96.26
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	96.25
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	96.16
2h00_A	254	Methyltransferase 10 domain containing protein; st	96.07
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	95.93
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	95.87
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	95.62
2qm3_A	373	Predicted methyltransferase; putative methyltransf	95.29
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	95.28
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.25
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	95.2
3k6r_A	278	Putative transferase PH0793; structural genomics,	95.04
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	94.9
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	94.84
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	94.17
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	94.02
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	93.88
3khk_A	544	Type I restriction-modification system methylation	93.84
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	93.81
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	93.78
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	93.59
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	93.57
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	93.53
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	93.34
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	92.35
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	92.06
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	91.62
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	91.55
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	91.52
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	90.67
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	90.59
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	90.42
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	90.39
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	90.12
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	90.02
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	89.38
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	89.27
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	88.23
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	87.96
3lkd_A	542	Type I restriction-modification system methyltrans	87.77
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	87.64
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	86.11
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	85.64
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	83.8
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	83.58
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	83.37
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	83.06

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=100.00  E-value=2.2e-77  Score=552.93  Aligned_cols=237  Identities=49%  Similarity=0.884  Sum_probs=224.6

Q ss_pred             CCccccccccCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccC-CCCccEEeeecCCCCcchHHHHHHHHHHHHHH
Q 043411            1 MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSS-FPGCFNVADLGCSSGPNTLLVVSKIIDSIHKL   79 (242)
Q Consensus         1 ~~~~~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~-~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~   79 (242)
                      |+++++|||+||+|++||++||.+|++++..++|++++||++++... .+++++|||||||+|+||+.+++.||++|+++
T Consensus         1 m~~~~~~~m~gg~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~   80 (359)
T 1m6e_X            1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEEL   80 (359)
T ss_dssp             CCCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHH
T ss_pred             CCcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCceEEEecCCCCCcchHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999998765 67899999999999999999999999999999


Q ss_pred             HhhhcC-CCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccC
Q 043411           80 YHQVNK-KLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKV  158 (242)
Q Consensus        80 ~~~~~~-~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~  158 (242)
                      |.+.++ ++|++||||||||+||||+||++|+.++    ..+ ++||++|||||||+||||++|+|++||++||||||++
T Consensus        81 ~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~----~~~-~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~  155 (359)
T 1m6e_X           81 RKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN----DVD-GVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQV  155 (359)
T ss_dssp             HHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC----SCT-TCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSC
T ss_pred             HHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc----ccC-CCEEEEecchhhhhccCCCCceEEEEehhhhhhcccC
Confidence            987665 6789999999999999999999999754    111 5899999999999999999999999999999999999


Q ss_pred             CCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCCCCCCCChhhHHHHHHHHHHHH
Q 043411          159 PENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQ  238 (242)
Q Consensus       159 P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~l~~~l~d  238 (242)
                      |+.+.+|||+||+++++|+.|.+||++||++||..||++|++||+|||+|+++++|+++.++.+++++.+|++|.++|+|
T Consensus       156 p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~  235 (359)
T 1m6e_X          156 PIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQ  235 (359)
T ss_dssp             CSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHH
T ss_pred             chhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCCCCccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888888899999999999


Q ss_pred             HHcC
Q 043411          239 LANE  242 (242)
Q Consensus       239 mv~e  242 (242)
                      ||.|
T Consensus       236 mv~e  239 (359)
T 1m6e_X          236 MVSE  239 (359)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            9976

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=100.00  E-value=5.8e-74  Score=534.13  Aligned_cols=235  Identities=46%  Similarity=0.847  Sum_probs=205.0

Q ss_pred             CCccccccccCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCC---ccEEeeecCCCCcchHHHHHHHHHHHH
Q 043411            1 MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPG---CFNVADLGCSSGPNTLLVVSKIIDSIH   77 (242)
Q Consensus         1 ~~~~~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~---~~~IaDlGCs~G~ns~~~~~~ii~~i~   77 (242)
                      |+++++|||+||+|++||++||. |++++..++|++++||++++....|+   +++|||||||+|+||+.+++.||++|+
T Consensus         1 m~~~~~~~M~gg~G~~sY~~nS~-Q~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~IaDlGCssG~NT~~~v~~ii~~i~   79 (384)
T 2efj_A            1 MELQEVLHMNGGEGDTSYAKNSS-YNLFLIRVKPVLEQCIQELLRANLPNINKCFKVGDLGCASGPNTFSTVRDIVQSID   79 (384)
T ss_dssp             --CTTTCCCCC----CCHHHHCC-TTTTHHHHHHHHHHHHHHHHHTTCTTTTTEEEEEEETCCSSHHHHHHHHHHHHHHT
T ss_pred             CCcccccccCCCCChhhHHHhHH-HHHHHHHHHHHHHHHHHHhhhcccCCcCCceEEEecCCCCCchHHHHHHHHHHHHH
Confidence            89999999999999999999999 99999999999999999998755566   899999999999999999999999999


Q ss_pred             HHHhh--hcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhc---CCCCceeeccccccccccCCCCceeEEEcccce
Q 043411           78 KLYHQ--VNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKD---KFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSV  152 (242)
Q Consensus        78 ~~~~~--~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~---~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~al  152 (242)
                      ++|.+  .+.++|++||+|||||+||||+||++|+.+++++.+.   ..++||++|||||||+||||++|+|++||++||
T Consensus        80 ~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aL  159 (384)
T 2efj_A           80 KVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCL  159 (384)
T ss_dssp             CC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCT
T ss_pred             HHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEEEecchhhhhccCCCCceEEEEeccee
Confidence            99865  4556789999999999999999999999988776542   356899999999999999999999999999999


Q ss_pred             eecccCCCcccC------CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCCC--CCCCCh
Q 043411          153 HWLSKVPENLEN------NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIA--DPSSKD  224 (242)
Q Consensus       153 hWLs~~P~~~~~------nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~--~~~~~~  224 (242)
                      ||||++|+.+.+      |||+||+++++|+.|.++|++||++||..||++|++||+|||+|+++++|+++.  ++.++ 
T Consensus       160 HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~-  238 (384)
T 2efj_A          160 HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSM-  238 (384)
T ss_dssp             TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCTTTCCCCHH-
T ss_pred             eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCCcccCcccH-
Confidence            999999999886      999999999999999999999999999999999999999999999999999998  76644 


Q ss_pred             hhHHHHHHHHHHHHHHcC
Q 043411          225 CCCLWELLTKSLIQLANE  242 (242)
Q Consensus       225 ~~~~~~~l~~~l~dmv~e  242 (242)
                           +++.++|++||.|
T Consensus       239 -----~~l~~al~~lv~e  251 (384)
T 2efj_A          239 -----DLLEMSINDLVIE  251 (384)
T ss_dssp             -----HHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHh
Confidence                 3899999999864

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=100.00  E-value=5.7e-73  Score=526.19  Aligned_cols=241  Identities=39%  Similarity=0.684  Sum_probs=197.3

Q ss_pred             CCccccccccCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccC--CCCccEEeeecCCCCcchHHHHHHHHHHHHH
Q 043411            1 MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSS--FPGCFNVADLGCSSGPNTLLVVSKIIDSIHK   78 (242)
Q Consensus         1 ~~~~~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~--~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~   78 (242)
                      |+++++|||+||+|++||++||..|++++..++|+++++|++++...  .|++++|||||||+|+||+.+++.||++|++
T Consensus         1 m~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~   80 (374)
T 3b5i_A            1 MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISK   80 (374)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcccccCCCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999987654  4678999999999999999999999999999


Q ss_pred             HHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhh-----h-cCCCCceeeccccccccccCCCCceeEEEcccce
Q 043411           79 LYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIK-----K-DKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSV  152 (242)
Q Consensus        79 ~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~-----~-~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~al  152 (242)
                      +|...+.++|++||+|||||+||||+||++|+.+++.+.     . ...++||++|||||||+||||++|+|++||++||
T Consensus        81 ~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aL  160 (374)
T 3b5i_A           81 RFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSL  160 (374)
T ss_dssp             HHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCT
T ss_pred             HHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEeccee
Confidence            998777778899999999999999999999998765331     1 2336799999999999999999999999999999


Q ss_pred             eecccCCCcccC------CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCCCCCCC-Chh
Q 043411          153 HWLSKVPENLEN------NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSS-KDC  225 (242)
Q Consensus       153 hWLs~~P~~~~~------nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~-~~~  225 (242)
                      ||||++|+.+.+      |||+||+++++|+ |.+||++||++||..||++|++||+|||+|+++++|+++.++.+ .+.
T Consensus       161 HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~-v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~  239 (374)
T 3b5i_A          161 HWLSQVPESVTDRRSAAYNRGRVFIHGAGEK-TTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGA  239 (374)
T ss_dssp             TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHH-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHH
T ss_pred             eeeccCchhhhccccccccCCceEeCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccch
Confidence            999999998875      9999999999988 99999999999999999999999999999999999999988776 346


Q ss_pred             hHHH-HHHHHHHHHHHcC
Q 043411          226 CCLW-ELLTKSLIQLANE  242 (242)
Q Consensus       226 ~~~~-~~l~~~l~dmv~e  242 (242)
                      +.+| ++|.++|+|||.|
T Consensus       240 ~~~~~~~l~~al~~l~~e  257 (374)
T 3b5i_A          240 GLLFGTHFQDAWDDLVRE  257 (374)
T ss_dssp             HHHHSSHHHHHHHHTTSS
T ss_pred             hhHHHHHHHHHHHHHHHh
Confidence            6799 9999999999876

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.92  E-value=5e-10  Score=95.43  Aligned_cols=128  Identities=17%  Similarity=0.226  Sum_probs=80.6

Q ss_pred             cchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEe
Q 043411           15 ETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFL   94 (242)
Q Consensus        15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~   94 (242)
                      ...|.+.+..|......+..       .+.   .....+|+|+|||+|..+..+.+..               |..+++.
T Consensus         8 ~~~y~~~~~~~~~~~~~l~~-------~~~---~~~~~~vLdiG~G~G~~~~~l~~~~---------------~~~~v~~   62 (259)
T 2p35_A            8 AQQYLKFEDERTRPARDLLA-------QVP---LERVLNGYDLGCGPGNSTELLTDRY---------------GVNVITG   62 (259)
T ss_dssp             CGGGBCCCCGGGHHHHHHHT-------TCC---CSCCSSEEEETCTTTHHHHHHHHHH---------------CTTSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------hcC---CCCCCEEEEecCcCCHHHHHHHHhC---------------CCCEEEE
Confidence            35688777777665543222       111   2345799999999999988776332               2356677


Q ss_pred             cCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCC
Q 043411           95 NDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKS  174 (242)
Q Consensus        95 nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~  174 (242)
                      .|+..           ...........+-.|   +.+++.+ +.|++++|++++..++||+.+.                
T Consensus        63 ~D~s~-----------~~~~~a~~~~~~~~~---~~~d~~~-~~~~~~fD~v~~~~~l~~~~~~----------------  111 (259)
T 2p35_A           63 IDSDD-----------DMLEKAADRLPNTNF---GKADLAT-WKPAQKADLLYANAVFQWVPDH----------------  111 (259)
T ss_dssp             EESCH-----------HHHHHHHHHSTTSEE---EECCTTT-CCCSSCEEEEEEESCGGGSTTH----------------
T ss_pred             EECCH-----------HHHHHHHHhCCCcEE---EECChhh-cCccCCcCEEEEeCchhhCCCH----------------
Confidence            77652           111111100011123   3346643 3378899999999999997432                


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411          175 SPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR  215 (242)
Q Consensus       175 s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  215 (242)
                                       ..+|+.-.+-|+|||+|+++..+.
T Consensus       112 -----------------~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A          112 -----------------LAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             -----------------HHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             -----------------HHHHHHHHHhcCCCeEEEEEeCCC
Confidence                             227888889999999999998754

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.89  E-value=3.2e-09  Score=93.28  Aligned_cols=117  Identities=13%  Similarity=0.151  Sum_probs=68.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhc-CCCCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKD-KFGPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~-~~~~~f~~~  128 (242)
                      ...+|+|+|||+|..|..++..+.    .+.     +...+.++.-|... +.-...+      ...... ...++-+..
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~----~~~-----~~~~v~~~~vD~S~-~ml~~a~------~~~~~~~~~~~v~~~~  115 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQ----AQY-----PGVCINNEVVEPSA-EQIAKYK------ELVAKTSNLENVKFAW  115 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHH----HHS-----TTCEEEEEEECSCH-HHHHHHH------HHHHTCSSCTTEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHH----hhC-----CCceeeEEEEeCCH-HHHHHHH------HHHHhccCCCcceEEE
Confidence            468999999999988776664442    221     11123447777652 1111111      111110 111221111


Q ss_pred             cccccccc------cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043411          129 MLGSFYQR------LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEI  202 (242)
Q Consensus       129 vpgSFy~~------l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL  202 (242)
                      ..++.-+-      -++++++|+|+++.++||+.+.+.                                 +|+.-.+-|
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~---------------------------------~l~~~~r~L  162 (292)
T 2aot_A          116 HKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPA---------------------------------TLKFFHSLL  162 (292)
T ss_dssp             ECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHH---------------------------------HHHHHHHTE
T ss_pred             EecchhhhhhhhccccCCCceeEEEEeeeeeecCCHHH---------------------------------HHHHHHHHc
Confidence            22232111      157899999999999999765433                                 677777888


Q ss_pred             ccCceEEEEeccc
Q 043411          203 VSGGRMFLTFLGR  215 (242)
Q Consensus       203 ~pGG~lvl~~~g~  215 (242)
                      +|||++++.....
T Consensus       163 kpgG~l~i~~~~~  175 (292)
T 2aot_A          163 GTNAKMLIIVVSG  175 (292)
T ss_dssp             EEEEEEEEEEECT
T ss_pred             CCCcEEEEEEecC
Confidence            9999999987654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.89  E-value=1.2e-08  Score=85.76  Aligned_cols=111  Identities=17%  Similarity=0.197  Sum_probs=71.7

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ++..+|+|+|||+|..+..+.+..               |..+++.-|+.. +.-...+      ....  ..+  -+..
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~---------------~~~~v~~vD~s~-~~~~~a~------~~~~--~~~--~~~~   96 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKY---------------PEATFTLVDMSE-KMLEIAK------NRFR--GNL--KVKY   96 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHC---------------TTCEEEEEESCH-HHHHHHH------HHTC--SCT--TEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhC---------------CCCeEEEEECCH-HHHHHHH------Hhhc--cCC--CEEE
Confidence            356899999999999988765321               346778778752 1111111      1110  111  2233


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+-.++ +++|++++..++||+.+                               .+...+|+.-.+-|+|||++
T Consensus        97 ~~~d~~~~~~~-~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l  144 (234)
T 3dtn_A           97 IEADYSKYDFE-EKYDMVVSALSIHHLED-------------------------------EDKKELYKRSYSILKESGIF  144 (234)
T ss_dssp             EESCTTTCCCC-SCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             EeCchhccCCC-CCceEEEEeCccccCCH-------------------------------HHHHHHHHHHHHhcCCCcEE
Confidence            55577544444 99999999999999733                               12234777777889999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      +++.+...+
T Consensus       145 ~~~~~~~~~  153 (234)
T 3dtn_A          145 INADLVHGE  153 (234)
T ss_dssp             EEEEECBCS
T ss_pred             EEEEecCCC
Confidence            999877654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.79  E-value=2.3e-08  Score=87.56  Aligned_cols=115  Identities=19%  Similarity=0.222  Sum_probs=71.4

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..|+.+.+.+             ..+..+|+--|+.. +.-...      +..+.... ...-+.-
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~-------------~~~~~~v~gvD~s~-~ml~~A------~~~~~~~~-~~~~v~~  127 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNI-------------HHDNCKIIAIDNSP-AMIERC------RRHIDAYK-APTPVDV  127 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTC-------------CSSSCEEEEEESCH-HHHHHH------HHHHHTSC-CSSCEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhc-------------CCCCCEEEEEECCH-HHHHHH------HHHHHhhc-cCceEEE
Confidence            345799999999999988775322             22457788778752 111111      11111111 0111222


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+  +|.++.|++++.+++||+..                               .|...+|+.-.+-|+|||+|
T Consensus       128 ~~~D~~~--~~~~~~d~v~~~~~l~~~~~-------------------------------~~~~~~l~~i~~~LkpGG~l  174 (261)
T 4gek_A          128 IEGDIRD--IAIENASMVVLNFTLQFLEP-------------------------------SERQALLDKIYQGLNPGGAL  174 (261)
T ss_dssp             EESCTTT--CCCCSEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             eeccccc--ccccccccceeeeeeeecCc-------------------------------hhHhHHHHHHHHHcCCCcEE
Confidence            3446633  35567999999999999642                               23445788888889999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      +++...+..
T Consensus       175 ii~e~~~~~  183 (261)
T 4gek_A          175 VLSEKFSFE  183 (261)
T ss_dssp             EEEEEBCCS
T ss_pred             EEEeccCCC
Confidence            998765543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.79  E-value=7.1e-09  Score=90.77  Aligned_cols=105  Identities=15%  Similarity=0.193  Sum_probs=68.5

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +..-+|+|+|||+|..|..+.+        +         -.+|+--|+..    ...+...         +.+++  ..
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~--------~---------~~~v~gvD~s~----~ml~~a~---------~~~~v--~~   85 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAE--------F---------FERVHAVDPGE----AQIRQAL---------RHPRV--TY   85 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHT--------T---------CSEEEEEESCH----HHHHTCC---------CCTTE--EE
T ss_pred             CCCCCEEEEcCCCCHHHHHHHH--------h---------CCEEEEEeCcH----Hhhhhhh---------hcCCc--ee
Confidence            3457899999999999887651        1         13566666641    1111111         11222  22


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +-+++.+--+|++++|+|+++.++||+.. +                                 .||+.-++=|||||+|
T Consensus        86 ~~~~~e~~~~~~~sfD~v~~~~~~h~~~~-~---------------------------------~~~~e~~rvLkpgG~l  131 (257)
T 4hg2_A           86 AVAPAEDTGLPPASVDVAIAAQAMHWFDL-D---------------------------------RFWAELRRVARPGAVF  131 (257)
T ss_dssp             EECCTTCCCCCSSCEEEEEECSCCTTCCH-H---------------------------------HHHHHHHHHEEEEEEE
T ss_pred             ehhhhhhhcccCCcccEEEEeeehhHhhH-H---------------------------------HHHHHHHHHcCCCCEE
Confidence            34466555679999999999999999631 1                                 1566666778999999


Q ss_pred             EEEecccCCCC
Q 043411          209 FLTFLGRSIAD  219 (242)
Q Consensus       209 vl~~~g~~~~~  219 (242)
                      ++...+.....
T Consensus       132 ~~~~~~~~~~~  142 (257)
T 4hg2_A          132 AAVTYGLTRVD  142 (257)
T ss_dssp             EEEEECCCBCC
T ss_pred             EEEECCCCCCC
Confidence            99888765543

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.77  E-value=2.8e-09  Score=92.68  Aligned_cols=128  Identities=17%  Similarity=0.204  Sum_probs=72.6

Q ss_pred             cchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEe
Q 043411           15 ETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFL   94 (242)
Q Consensus        15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~   94 (242)
                      ...|.++...|......+...+       .   .....+|+|+|||+|..+..+.+                 +..+|+-
T Consensus        32 a~~y~~~~~~~~~~~~~l~~~l-------~---~~~~~~vLDiGcG~G~~~~~l~~-----------------~~~~v~g   84 (279)
T 3ccf_A           32 ATLYQDKHSFVWQYGEDLLQLL-------N---PQPGEFILDLGCGTGQLTEKIAQ-----------------SGAEVLG   84 (279)
T ss_dssp             ---------CCSSSCCHHHHHH-------C---CCTTCEEEEETCTTSHHHHHHHH-----------------TTCEEEE
T ss_pred             HHHHhhcchHHHHHHHHHHHHh-------C---CCCCCEEEEecCCCCHHHHHHHh-----------------CCCeEEE
Confidence            4567766665544333322211       1   12457999999999999887652                 1357777


Q ss_pred             cCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCC
Q 043411           95 NDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKS  174 (242)
Q Consensus        95 nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~  174 (242)
                      .|+.. +.-...+      ...    .+-.|   +.+++.. +.+++++|++++..++||+.+.+               
T Consensus        85 vD~s~-~~~~~a~------~~~----~~~~~---~~~d~~~-~~~~~~fD~v~~~~~l~~~~d~~---------------  134 (279)
T 3ccf_A           85 TDNAA-TMIEKAR------QNY----PHLHF---DVADARN-FRVDKPLDAVFSNAMLHWVKEPE---------------  134 (279)
T ss_dssp             EESCH-HHHHHHH------HHC----TTSCE---EECCTTT-CCCSSCEEEEEEESCGGGCSCHH---------------
T ss_pred             EECCH-HHHHHHH------hhC----CCCEE---EECChhh-CCcCCCcCEEEEcchhhhCcCHH---------------
Confidence            77641 1111111      110    11223   2335533 44578999999999999975422               


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCC
Q 043411          175 SPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSI  217 (242)
Q Consensus       175 s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~  217 (242)
                                        .+|+.-.+-|+|||++++...+..+
T Consensus       135 ------------------~~l~~~~~~LkpgG~l~~~~~~~~~  159 (279)
T 3ccf_A          135 ------------------AAIASIHQALKSGGRFVAEFGGKGN  159 (279)
T ss_dssp             ------------------HHHHHHHHHEEEEEEEEEEEECTTT
T ss_pred             ------------------HHHHHHHHhcCCCcEEEEEecCCcc
Confidence                              2777778889999999999887544

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.75  E-value=1.1e-08  Score=87.09  Aligned_cols=103  Identities=13%  Similarity=0.165  Sum_probs=66.2

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+.                 ..+++..|+.. +.-...+      ... .....+  +..
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~-----------------~~~v~~vD~s~-~~~~~a~------~~~-~~~~~~--~~~   90 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIAR-----------------GYRYIALDADA-AMLEVFR------QKI-AGVDRK--VQV   90 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTT-----------------TCEEEEEESCH-HHHHHHH------HHT-TTSCTT--EEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHC-----------------CCEEEEEECCH-HHHHHHH------HHh-hccCCc--eEE
Confidence            34679999999999998876521                 14566667642 1111111      111 001112  223


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++..-.++++++|++++..++||+.+.+                                 .+|+.-.+-|+|||++
T Consensus        91 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~---------------------------------~~l~~~~~~L~pgG~l  137 (263)
T 2yqz_A           91 VQADARAIPLPDESVHGVIVVHLWHLVPDWP---------------------------------KVLAEAIRVLKPGGAL  137 (263)
T ss_dssp             EESCTTSCCSCTTCEEEEEEESCGGGCTTHH---------------------------------HHHHHHHHHEEEEEEE
T ss_pred             EEcccccCCCCCCCeeEEEECCchhhcCCHH---------------------------------HHHHHHHHHCCCCcEE
Confidence            4456655456889999999999999975422                                 2777777889999999


Q ss_pred             EEE
Q 043411          209 FLT  211 (242)
Q Consensus       209 vl~  211 (242)
                      ++.
T Consensus       138 ~~~  140 (263)
T 2yqz_A          138 LEG  140 (263)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.73  E-value=2e-08  Score=85.20  Aligned_cols=104  Identities=16%  Similarity=0.181  Sum_probs=68.8

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+        .         ..+|+--|+.           +........    .  +..
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~gvD~s-----------~~~~~~a~~----~--~~~   85 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKE--------E---------GIESIGVDIN-----------EDMIKFCEG----K--FNV   85 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHH--------H---------TCCEEEECSC-----------HHHHHHHHT----T--SEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHh--------C---------CCcEEEEECC-----------HHHHHHHHh----h--cce
Confidence            3458999999999998765542        1         1345666664           111111111    1  223


Q ss_pred             cccccccc--cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          129 MLGSFYQR--LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       129 vpgSFy~~--l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      +.++..+-  -+|++++|+|+|..++||+.+                               .|+..+|+.-.+-|+|||
T Consensus        86 ~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG  134 (240)
T 3dli_A           86 VKSDAIEYLKSLPDKYLDGVMISHFVEHLDP-------------------------------ERLFELLSLCYSKMKYSS  134 (240)
T ss_dssp             ECSCHHHHHHTSCTTCBSEEEEESCGGGSCG-------------------------------GGHHHHHHHHHHHBCTTC
T ss_pred             eeccHHHHhhhcCCCCeeEEEECCchhhCCc-------------------------------HHHHHHHHHHHHHcCCCc
Confidence            34455432  468899999999999999752                               133448888888999999


Q ss_pred             eEEEEecccCC
Q 043411          207 RMFLTFLGRSI  217 (242)
Q Consensus       207 ~lvl~~~g~~~  217 (242)
                      ++++..+....
T Consensus       135 ~l~~~~~~~~~  145 (240)
T 3dli_A          135 YIVIESPNPTS  145 (240)
T ss_dssp             CEEEEEECTTS
T ss_pred             EEEEEeCCcch
Confidence            99999987543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.71  E-value=1.3e-07  Score=78.02  Aligned_cols=105  Identities=12%  Similarity=0.068  Sum_probs=69.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+.                 ..+++.-|+.. +.-...+.          ....+  +..+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~-----------------~~~v~~~D~s~-~~~~~a~~----------~~~~~--~~~~   95 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGL-----------------ADRVTALDGSA-EMIAEAGR----------HGLDN--VEFR   95 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHH-----------------SSEEEEEESCH-HHHHHHGG----------GCCTT--EEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhc-----------------CCeEEEEeCCH-HHHHHHHh----------cCCCC--eEEE
Confidence            3469999999999988776522                 14566666641 11111111          11112  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+ +++++++|+++++.++||+.+                               .++..+|+.-.+-|+|||+++
T Consensus        96 ~~d~~~-~~~~~~~D~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L~pgG~l~  143 (218)
T 3ou2_A           96 QQDLFD-WTPDRQWDAVFFAHWLAHVPD-------------------------------DRFEAFWESVRSAVAPGGVVE  143 (218)
T ss_dssp             ECCTTS-CCCSSCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             eccccc-CCCCCceeEEEEechhhcCCH-------------------------------HHHHHHHHHHHHHcCCCeEEE
Confidence            457744 489999999999999998643                               123447888888899999999


Q ss_pred             EEecccC
Q 043411          210 LTFLGRS  216 (242)
Q Consensus       210 l~~~g~~  216 (242)
                      ++.+.+.
T Consensus       144 ~~~~~~~  150 (218)
T 3ou2_A          144 FVDVTDH  150 (218)
T ss_dssp             EEEECCC
T ss_pred             EEeCCCC
Confidence            9988774

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.69  E-value=5.5e-08  Score=83.58  Aligned_cols=111  Identities=12%  Similarity=0.086  Sum_probs=71.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..                ..+++--|+.. +.-...+      ......... --+..+
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~----------------~~~v~gvD~s~-~~~~~a~------~~~~~~~~~-~~~~~~  116 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATAR----------------DVRVTGISISR-PQVNQAN------ARATAAGLA-NRVTFS  116 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHS----------------CCEEEEEESCH-HHHHHHH------HHHHHTTCT-TTEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhc----------------CCEEEEEeCCH-HHHHHHH------HHHHhcCCC-cceEEE
Confidence            45799999999999988775311                25666666642 1111111      111110100 012234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+--+|++++|+++|..++||+.+.+                                 .+|+.-.+-|+|||+++
T Consensus       117 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~---------------------------------~~l~~~~~~L~pgG~l~  163 (273)
T 3bus_A          117 YADAMDLPFEDASFDAVWALESLHHMPDRG---------------------------------RALREMARVLRPGGTVA  163 (273)
T ss_dssp             ECCTTSCCSCTTCEEEEEEESCTTTSSCHH---------------------------------HHHHHHHTTEEEEEEEE
T ss_pred             ECccccCCCCCCCccEEEEechhhhCCCHH---------------------------------HHHHHHHHHcCCCeEEE
Confidence            557766557889999999999999974321                                 27888888999999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      ++.+....
T Consensus       164 i~~~~~~~  171 (273)
T 3bus_A          164 IADFVLLA  171 (273)
T ss_dssp             EEEEEESS
T ss_pred             EEEeeccC
Confidence            99987654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.67  E-value=7.5e-08  Score=81.85  Aligned_cols=110  Identities=14%  Similarity=0.127  Sum_probs=72.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..                ..+|+--|+.. +.-...+..      ..  ...+  +..+
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~----------------~~~v~~vD~s~-~~~~~a~~~------~~--~~~~--~~~~  107 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKY----------------GAHTHGIDICS-NIVNMANER------VS--GNNK--IIFE  107 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH----------------CCEEEEEESCH-HHHHHHHHT------CC--SCTT--EEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHc----------------CCEEEEEeCCH-HHHHHHHHH------hh--cCCC--eEEE
Confidence            46799999999999988776332                14666666642 111111111      00  0011  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+--+|++++|+|++..++||++.                               .|+..+|+.-.+-|+|||+++
T Consensus       108 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L~pgG~l~  156 (266)
T 3ujc_A          108 ANDILTKEFPENNFDLIYSRDAILALSL-------------------------------ENKNKLFQKCYKWLKPTGTLL  156 (266)
T ss_dssp             ECCTTTCCCCTTCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             ECccccCCCCCCcEEEEeHHHHHHhcCh-------------------------------HHHHHHHHHHHHHcCCCCEEE
Confidence            4566555678899999999999999621                               244558888888999999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      +..+....
T Consensus       157 ~~~~~~~~  164 (266)
T 3ujc_A          157 ITDYCATE  164 (266)
T ss_dssp             EEEEEESC
T ss_pred             EEEeccCC
Confidence            99987665

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.65  E-value=3.7e-08  Score=84.34  Aligned_cols=108  Identities=17%  Similarity=0.198  Sum_probs=68.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+        +    +     .+++..|+.. +.-...+      ........++  +..+
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~--------~----~-----~~v~gvD~s~-~~l~~a~------~~~~~~~~~~--v~~~   90 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAP--------F----V-----KKVVAFDLTE-DILKVAR------AFIEGNGHQQ--VEYV   90 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGG--------G----S-----SEEEEEESCH-HHHHHHH------HHHHHTTCCS--EEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHH--------h----C-----CEEEEEeCCH-HHHHHHH------HHHHhcCCCc--eEEE
Confidence            467999999999998776641        1    1     2677777642 1111111      1111111122  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++..--+|++++|+++|..++||+.+.+.                                 +|+.-.+-|+|||+++
T Consensus        91 ~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~~---------------------------------~l~~~~r~LkpgG~l~  137 (260)
T 1vl5_A           91 QGDAEQMPFTDERFHIVTCRIAAHHFPNPAS---------------------------------FVSEAYRVLKKGGQLL  137 (260)
T ss_dssp             ECCC-CCCSCTTCEEEEEEESCGGGCSCHHH---------------------------------HHHHHHHHEEEEEEEE
T ss_pred             EecHHhCCCCCCCEEEEEEhhhhHhcCCHHH---------------------------------HHHHHHHHcCCCCEEE
Confidence            4577555578899999999999999754322                                 6777778889999999


Q ss_pred             EEecccC
Q 043411          210 LTFLGRS  216 (242)
Q Consensus       210 l~~~g~~  216 (242)
                      +......
T Consensus       138 ~~~~~~~  144 (260)
T 1vl5_A          138 LVDNSAP  144 (260)
T ss_dssp             EEEEEBC
T ss_pred             EEEcCCC
Confidence            9866543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.65  E-value=7.9e-08  Score=79.05  Aligned_cols=105  Identities=17%  Similarity=0.195  Sum_probs=67.1

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcC-CCCceeecc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDK-FGPCFIAGM  129 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~-~~~~f~~~v  129 (242)
                      +.+|+|+|||+|..+..+.+.                +..+++.-|+.. +.-...+      ..+.... ..+  +..+
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~----------------~~~~v~~~D~s~-~~~~~a~------~~~~~~~~~~~--~~~~   98 (219)
T 3dlc_A           44 AGTCIDIGSGPGALSIALAKQ----------------SDFSIRALDFSK-HMNEIAL------KNIADANLNDR--IQIV   98 (219)
T ss_dssp             EEEEEEETCTTSHHHHHHHHH----------------SEEEEEEEESCH-HHHHHHH------HHHHHTTCTTT--EEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHc----------------CCCeEEEEECCH-HHHHHHH------HHHHhccccCc--eEEE
Confidence            349999999999988766521                246778777742 1111111      1111111 111  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+--+|++++|++++..++||+.+.                                 ..+|+.-.+-|+|||+++
T Consensus        99 ~~d~~~~~~~~~~~D~v~~~~~l~~~~~~---------------------------------~~~l~~~~~~L~pgG~l~  145 (219)
T 3dlc_A           99 QGDVHNIPIEDNYADLIVSRGSVFFWEDV---------------------------------ATAFREIYRILKSGGKTY  145 (219)
T ss_dssp             ECBTTBCSSCTTCEEEEEEESCGGGCSCH---------------------------------HHHHHHHHHHEEEEEEEE
T ss_pred             EcCHHHCCCCcccccEEEECchHhhccCH---------------------------------HHHHHHHHHhCCCCCEEE
Confidence            45675555788999999999999997321                                 227777788899999999


Q ss_pred             EEec
Q 043411          210 LTFL  213 (242)
Q Consensus       210 l~~~  213 (242)
                      ++..
T Consensus       146 ~~~~  149 (219)
T 3dlc_A          146 IGGG  149 (219)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9753

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.64  E-value=2.5e-07  Score=78.38  Aligned_cols=108  Identities=16%  Similarity=0.159  Sum_probs=68.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..                ..+++.-|... ..-...      +.....    ..-+..+
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~----------------~~~v~~vD~s~-~~~~~a------~~~~~~----~~~~~~~  145 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL----------------YATTDLLEPVK-HMLEEA------KRELAG----MPVGKFI  145 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH----------------CSEEEEEESCH-HHHHHH------HHHTTT----SSEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh----------------cCEEEEEeCCH-HHHHHH------HHHhcc----CCceEEE
Confidence            46899999999999888765321                13455555531 111111      111100    0112234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++..--+|++++|++++..++|+++.                               .|+..+|+.-.+-|+|||+++
T Consensus       146 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l~  194 (254)
T 1xtp_A          146 LASMETATLPPNTYDLIVIQWTAIYLTD-------------------------------ADFVKFFKHCQQALTPNGYIF  194 (254)
T ss_dssp             ESCGGGCCCCSSCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             EccHHHCCCCCCCeEEEEEcchhhhCCH-------------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence            4566554567899999999999998643                               234558888888999999999


Q ss_pred             EEeccc
Q 043411          210 LTFLGR  215 (242)
Q Consensus       210 l~~~g~  215 (242)
                      ++....
T Consensus       195 i~~~~~  200 (254)
T 1xtp_A          195 FKENCS  200 (254)
T ss_dssp             EEEEBC
T ss_pred             EEecCC
Confidence            998643

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.63  E-value=1.5e-07  Score=82.06  Aligned_cols=112  Identities=16%  Similarity=0.079  Sum_probs=72.3

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceee
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIA  127 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~  127 (242)
                      +...+|+|+|||+|..+..+.+..                ..+++.-|+.. ..-...+.      ....... .+  +.
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~----------------~~~v~gvD~s~-~~~~~a~~------~~~~~~~~~~--~~  135 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKF----------------GVSIDCLNIAP-VQNKRNEE------YNNQAGLADN--IT  135 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH----------------CCEEEEEESCH-HHHHHHHH------HHHHHTCTTT--EE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHh----------------CCEEEEEeCCH-HHHHHHHH------HHHhcCCCcc--eE
Confidence            346799999999999988775322                14667667652 11111111      1111000 11  22


Q ss_pred             ccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          128 GMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       128 ~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      .+.+++.+--+|++++|++++..++||+.+.+                                 .+|+.-.+-|+|||+
T Consensus       136 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~---------------------------------~~l~~~~~~LkpgG~  182 (297)
T 2o57_A          136 VKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKL---------------------------------KVFQECARVLKPRGV  182 (297)
T ss_dssp             EEECCTTSCSSCTTCEEEEEEESCGGGCSCHH---------------------------------HHHHHHHHHEEEEEE
T ss_pred             EEEcCcccCCCCCCCEeEEEecchhhhcCCHH---------------------------------HHHHHHHHHcCCCeE
Confidence            34557766567889999999999999975521                                 277777888999999


Q ss_pred             EEEEecccCCC
Q 043411          208 MFLTFLGRSIA  218 (242)
Q Consensus       208 lvl~~~g~~~~  218 (242)
                      |+++.+...+.
T Consensus       183 l~~~~~~~~~~  193 (297)
T 2o57_A          183 MAITDPMKEDG  193 (297)
T ss_dssp             EEEEEEEECTT
T ss_pred             EEEEEeccCCC
Confidence            99998876543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.62  E-value=7.7e-08  Score=83.59  Aligned_cols=109  Identities=16%  Similarity=0.202  Sum_probs=68.6

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+.                 ..+++.-|+.. +.-...+      ..+..... .--+..
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~gvD~s~-~~~~~a~------~~~~~~~~-~~~v~~  121 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAER-----------------GHQVILCDLSA-QMIDRAK------QAAEAKGV-SDNMQF  121 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT-----------------TCEEEEEESCH-HHHHHHH------HHHHC-CC-GGGEEE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHC-----------------CCEEEEEECCH-HHHHHHH------HHHHhcCC-CcceEE
Confidence            34689999999999988766521                 14677777642 1111111      11111000 011223


Q ss_pred             ccccccccc-CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          129 MLGSFYQRL-FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       129 vpgSFy~~l-~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      +.+++.+.. ++++++|+|++..++||+.+.+                                 .+|+.-.+-|+|||+
T Consensus       122 ~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~---------------------------------~~l~~~~~~LkpgG~  168 (285)
T 4htf_A          122 IHCAAQDVASHLETPVDLILFHAVLEWVADPR---------------------------------SVLQTLWSVLRPGGV  168 (285)
T ss_dssp             EESCGGGTGGGCSSCEEEEEEESCGGGCSCHH---------------------------------HHHHHHHHTEEEEEE
T ss_pred             EEcCHHHhhhhcCCCceEEEECchhhcccCHH---------------------------------HHHHHHHHHcCCCeE
Confidence            444665444 6889999999999999974321                                 278888888999999


Q ss_pred             EEEEeccc
Q 043411          208 MFLTFLGR  215 (242)
Q Consensus       208 lvl~~~g~  215 (242)
                      +++..+.+
T Consensus       169 l~~~~~~~  176 (285)
T 4htf_A          169 LSLMFYNA  176 (285)
T ss_dssp             EEEEEEBH
T ss_pred             EEEEEeCC
Confidence            99998754

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.60  E-value=1e-07  Score=78.35  Aligned_cols=105  Identities=13%  Similarity=0.106  Sum_probs=69.3

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..+..+.+.                 ..+++--|+..           ......+.. ..+  +..+.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~gvD~s~-----------~~~~~a~~~-~~~--~~~~~   90 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL-----------------GHQIEGLEPAT-----------RLVELARQT-HPS--VTFHH   90 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT-----------------TCCEEEECCCH-----------HHHHHHHHH-CTT--SEEEC
T ss_pred             CCeEEEecCCCCHHHHHHHhc-----------------CCeEEEEeCCH-----------HHHHHHHHh-CCC--CeEEe
Confidence            579999999999988766521                 13566666641           111111110 111  11244


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      +++.+--++++++|++++..++||+..                               +|...+|+.-.+-|+|||++++
T Consensus        91 ~d~~~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L~pgG~l~i  139 (203)
T 3h2b_A           91 GTITDLSDSPKRWAGLLAWYSLIHMGP-------------------------------GELPDALVALRMAVEDGGGLLM  139 (203)
T ss_dssp             CCGGGGGGSCCCEEEEEEESSSTTCCT-------------------------------TTHHHHHHHHHHTEEEEEEEEE
T ss_pred             CcccccccCCCCeEEEEehhhHhcCCH-------------------------------HHHHHHHHHHHHHcCCCcEEEE
Confidence            466555568899999999999998641                               1233488888889999999999


Q ss_pred             EecccCC
Q 043411          211 TFLGRSI  217 (242)
Q Consensus       211 ~~~g~~~  217 (242)
                      +.+....
T Consensus       140 ~~~~~~~  146 (203)
T 3h2b_A          140 SFFSGPS  146 (203)
T ss_dssp             EEECCSS
T ss_pred             EEccCCc
Confidence            9987765

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.59  E-value=1.2e-07  Score=80.64  Aligned_cols=104  Identities=14%  Similarity=0.149  Sum_probs=67.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+        .    +   + -+++.-|+.. +.-...+      ...   ...+  +..+
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~--------~----~---~-~~v~~vD~s~-~~~~~a~------~~~---~~~~--~~~~   95 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAE--------H----G---A-KKVLGIDLSE-RMLTEAK------RKT---TSPV--VCYE   95 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHH--------T----T---C-SEEEEEESCH-HHHHHHH------HHC---CCTT--EEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHH--------c----C---C-CEEEEEECCH-HHHHHHH------Hhh---ccCC--eEEE
Confidence            468999999999988776641        1    1   2 2677777752 1111111      111   0011  1234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++..--+|++++|+|++..++||+.+.                                 ..+|+.-.+-|+|||+++
T Consensus        96 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~~---------------------------------~~~l~~~~~~LkpgG~l~  142 (253)
T 3g5l_A           96 QKAIEDIAIEPDAYNVVLSSLALHYIASF---------------------------------DDICKKVYINLKSSGSFI  142 (253)
T ss_dssp             ECCGGGCCCCTTCEEEEEEESCGGGCSCH---------------------------------HHHHHHHHHHEEEEEEEE
T ss_pred             EcchhhCCCCCCCeEEEEEchhhhhhhhH---------------------------------HHHHHHHHHHcCCCcEEE
Confidence            45665545678999999999999997331                                 227777788899999999


Q ss_pred             EEecc
Q 043411          210 LTFLG  214 (242)
Q Consensus       210 l~~~g  214 (242)
                      ++...
T Consensus       143 ~~~~~  147 (253)
T 3g5l_A          143 FSVEH  147 (253)
T ss_dssp             EEEEC
T ss_pred             EEeCC
Confidence            98654

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.59  E-value=3.2e-08  Score=82.91  Aligned_cols=103  Identities=16%  Similarity=0.125  Sum_probs=65.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+        .    +   +  +++--|+.     .      ..-...+.. ... -+..+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~--------~----~---~--~v~gvD~s-----~------~~~~~a~~~-~~~-~v~~~   91 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQE--------H----F---N--DITCVEAS-----E------EAISHAQGR-LKD-GITYI   91 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTT--------T----C---S--CEEEEESC-----H------HHHHHHHHH-SCS-CEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHH--------h----C---C--cEEEEeCC-----H------HHHHHHHHh-hhC-CeEEE
Confidence            346899999999998776641        1    1   2  45555654     1      111111110 010 12234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHH-hhhccCceE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRS-EEIVSGGRM  208 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra-~EL~pGG~l  208 (242)
                      .+++ +.++|++++|+|++..++|++.+.+                                 .+|+.-. +-|+|||+|
T Consensus        92 ~~d~-~~~~~~~~fD~v~~~~~l~~~~~~~---------------------------------~~l~~~~~~~LkpgG~l  137 (250)
T 2p7i_A           92 HSRF-EDAQLPRRYDNIVLTHVLEHIDDPV---------------------------------ALLKRINDDWLAEGGRL  137 (250)
T ss_dssp             ESCG-GGCCCSSCEEEEEEESCGGGCSSHH---------------------------------HHHHHHHHTTEEEEEEE
T ss_pred             EccH-HHcCcCCcccEEEEhhHHHhhcCHH---------------------------------HHHHHHHHHhcCCCCEE
Confidence            4466 3447889999999999999974321                                 2777777 889999999


Q ss_pred             EEEecccC
Q 043411          209 FLTFLGRS  216 (242)
Q Consensus       209 vl~~~g~~  216 (242)
                      +++.+...
T Consensus       138 ~i~~~~~~  145 (250)
T 2p7i_A          138 FLVCPNAN  145 (250)
T ss_dssp             EEEEECTT
T ss_pred             EEEcCChH
Confidence            99987654

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.58  E-value=1.6e-07  Score=77.86  Aligned_cols=108  Identities=12%  Similarity=0.150  Sum_probs=69.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+        .         -.+++.-|+.. +.-...+      ....  ..++  +..+
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~~vD~s~-~~~~~a~------~~~~--~~~~--~~~~  102 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAP--------H---------CKRLTVIDVMP-RAIGRAC------QRTK--RWSH--ISWA  102 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGG--------G---------EEEEEEEESCH-HHHHHHH------HHTT--TCSS--EEEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHH--------c---------CCEEEEEECCH-HHHHHHH------Hhcc--cCCC--eEEE
Confidence            468999999999998876641        1         14666667642 1111111      1111  1112  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++. .+.|++++|++++..++||+.+.                              .++..+|+.-.+-|+|||+++
T Consensus       103 ~~d~~-~~~~~~~fD~v~~~~~l~~~~~~------------------------------~~~~~~l~~~~~~L~pgG~l~  151 (216)
T 3ofk_A          103 ATDIL-QFSTAELFDLIVVAEVLYYLEDM------------------------------TQMRTAIDNMVKMLAPGGHLV  151 (216)
T ss_dssp             ECCTT-TCCCSCCEEEEEEESCGGGSSSH------------------------------HHHHHHHHHHHHTEEEEEEEE
T ss_pred             Ecchh-hCCCCCCccEEEEccHHHhCCCH------------------------------HHHHHHHHHHHHHcCCCCEEE
Confidence            44663 34488999999999999996542                              234457888888999999999


Q ss_pred             EEecccC
Q 043411          210 LTFLGRS  216 (242)
Q Consensus       210 l~~~g~~  216 (242)
                      ++.....
T Consensus       152 ~~~~~~~  158 (216)
T 3ofk_A          152 FGSARDA  158 (216)
T ss_dssp             EEEECHH
T ss_pred             EEecCCC
Confidence            9886543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.58  E-value=2.5e-07  Score=84.31  Aligned_cols=104  Identities=18%  Similarity=0.313  Sum_probs=72.7

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+..               |..+++.-|+|  .   .......         ..+  +..
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~---------------p~~~~~~~D~~--~---~~~~a~~---------~~~--v~~  250 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKY---------------PSINAINFDLP--H---VIQDAPA---------FSG--VEH  250 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC---------------TTCEEEEEECH--H---HHTTCCC---------CTT--EEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhC---------------CCCEEEEEehH--H---HHHhhhh---------cCC--CEE
Confidence            356899999999999888776322               45778888886  2   2221111         012  334


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.++|++ -+|++  |++++.+.+|++++                               .+...+|+.-.+-|+|||+|
T Consensus       251 ~~~d~~~-~~p~~--D~v~~~~vlh~~~~-------------------------------~~~~~~l~~~~~~L~pgG~l  296 (368)
T 3reo_A          251 LGGDMFD-GVPKG--DAIFIKWICHDWSD-------------------------------EHCLKLLKNCYAALPDHGKV  296 (368)
T ss_dssp             EECCTTT-CCCCC--SEEEEESCGGGBCH-------------------------------HHHHHHHHHHHHHSCTTCEE
T ss_pred             EecCCCC-CCCCC--CEEEEechhhcCCH-------------------------------HHHHHHHHHHHHHcCCCCEE
Confidence            6779987 56765  99999999985332                               23445888889999999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++.-+..++
T Consensus       297 ~i~e~~~~~  305 (368)
T 3reo_A          297 IVAEYILPP  305 (368)
T ss_dssp             EEEECCCCS
T ss_pred             EEEEeccCC
Confidence            998776544

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.57  E-value=2.4e-07  Score=84.48  Aligned_cols=104  Identities=18%  Similarity=0.309  Sum_probs=73.2

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+++..               |..+++.-|+|  .   .......         ..+  +..
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~---------------p~~~~~~~D~~--~---~~~~a~~---------~~~--v~~  248 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHY---------------PTIKGVNFDLP--H---VISEAPQ---------FPG--VTH  248 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC---------------TTCEEEEEECH--H---HHTTCCC---------CTT--EEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHC---------------CCCeEEEecCH--H---HHHhhhh---------cCC--eEE
Confidence            356899999999999888776322               45778888886  2   2222111         012  335


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.++|++ -+|.+  |++++.+++|.+++                               ++...+|+.-++-|+|||+|
T Consensus       249 ~~~D~~~-~~p~~--D~v~~~~vlh~~~d-------------------------------~~~~~~L~~~~~~L~pgG~l  294 (364)
T 3p9c_A          249 VGGDMFK-EVPSG--DTILMKWILHDWSD-------------------------------QHCATLLKNCYDALPAHGKV  294 (364)
T ss_dssp             EECCTTT-CCCCC--SEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHSCTTCEE
T ss_pred             EeCCcCC-CCCCC--CEEEehHHhccCCH-------------------------------HHHHHHHHHHHHHcCCCCEE
Confidence            7779987 56765  99999999984322                               24455899999999999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++.-+..++
T Consensus       295 ~i~e~~~~~  303 (364)
T 3p9c_A          295 VLVQCILPV  303 (364)
T ss_dssp             EEEECCBCS
T ss_pred             EEEEeccCC
Confidence            998776654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.55  E-value=5e-08  Score=84.13  Aligned_cols=103  Identities=14%  Similarity=0.182  Sum_probs=69.5

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+                 +..+|+-.|+..           ......+. .. +  +..
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~-----------------~~~~v~gvD~s~-----------~~~~~a~~-~~-~--~~~   80 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALAN-----------------QGLFVYAVEPSI-----------VMRQQAVV-HP-Q--VEW   80 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHT-----------------TTCEEEEECSCH-----------HHHHSSCC-CT-T--EEE
T ss_pred             CCCCEEEEEcCcccHHHHHHHh-----------------CCCEEEEEeCCH-----------HHHHHHHh-cc-C--CEE
Confidence            3468999999999998876651                 236788888762           11110000 00 1  223


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+--+|++++|+|++..++||+.+.                                 ..+|+.-.+-|+ ||++
T Consensus        81 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~---------------------------------~~~l~~~~~~Lk-gG~~  126 (261)
T 3ege_A           81 FTGYAENLALPDKSVDGVISILAIHHFSHL---------------------------------EKSFQEMQRIIR-DGTI  126 (261)
T ss_dssp             ECCCTTSCCSCTTCBSEEEEESCGGGCSSH---------------------------------HHHHHHHHHHBC-SSCE
T ss_pred             EECchhhCCCCCCCEeEEEEcchHhhccCH---------------------------------HHHHHHHHHHhC-CcEE
Confidence            445665545678999999999999987332                                 237888888899 9999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++..+....
T Consensus       127 ~~~~~~~~~  135 (261)
T 3ege_A          127 VLLTFDIRL  135 (261)
T ss_dssp             EEEEECGGG
T ss_pred             EEEEcCCch
Confidence            998887644

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.55  E-value=1.6e-07  Score=77.57  Aligned_cols=100  Identities=11%  Similarity=0.089  Sum_probs=64.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCce-EEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEF-QVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~-qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ...+|+|+|||+|..+..+          .          . +++.-|+.. +.-...+      ...    .+-.+   
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----------~----------~~~v~~vD~s~-~~~~~a~------~~~----~~~~~---   81 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----------P----------YPQKVGVEPSE-AMLAVGR------RRA----PEATW---   81 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----------C----------CSEEEEECCCH-HHHHHHH------HHC----TTSEE---
T ss_pred             CCCeEEEECCCCCHhHHhC----------C----------CCeEEEEeCCH-HHHHHHH------HhC----CCcEE---
Confidence            4679999999999876644          0          2 566666642 1111110      000    01122   


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+--++++++|++++..++||+.+..                                 .+|+.-.+-|+|||++
T Consensus        82 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~---------------------------------~~l~~~~~~L~pgG~l  128 (211)
T 2gs9_A           82 VRAWGEALPFPGESFDVVLLFTTLEFVEDVE---------------------------------RVLLEARRVLRPGGAL  128 (211)
T ss_dssp             ECCCTTSCCSCSSCEEEEEEESCTTTCSCHH---------------------------------HHHHHHHHHEEEEEEE
T ss_pred             EEcccccCCCCCCcEEEEEEcChhhhcCCHH---------------------------------HHHHHHHHHcCCCCEE
Confidence            3335544446788999999999999965311                                 2677777888999999


Q ss_pred             EEEecccC
Q 043411          209 FLTFLGRS  216 (242)
Q Consensus       209 vl~~~g~~  216 (242)
                      +++.+.+.
T Consensus       129 ~i~~~~~~  136 (211)
T 2gs9_A          129 VVGVLEAL  136 (211)
T ss_dssp             EEEEECTT
T ss_pred             EEEecCCc
Confidence            99988664

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.54  E-value=2.5e-07  Score=83.38  Aligned_cols=110  Identities=20%  Similarity=0.150  Sum_probs=73.3

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+++..               |..+++.-|+|.  .-.  +.... ...+      .--+..
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~---------------p~~~~~~~D~~~--~~~--~~~~~-~~~~------~~~v~~  236 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREH---------------PGLQGVLLDRAE--VVA--RHRLD-APDV------AGRWKV  236 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHC---------------TTEEEEEEECHH--HHT--TCCCC-CGGG------TTSEEE
T ss_pred             cCCceEEEECCccCHHHHHHHHHC---------------CCCEEEEecCHH--Hhh--ccccc-ccCC------CCCeEE
Confidence            457899999999999888776322               457888888862  111  11100 0011      112334


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.++|+ .-+|  +.|++++..++|.+++                               .+...+|+.-.+-|+|||++
T Consensus       237 ~~~d~~-~~~p--~~D~v~~~~vlh~~~d-------------------------------~~~~~~L~~~~~~LkpgG~l  282 (348)
T 3lst_A          237 VEGDFL-REVP--HADVHVLKRILHNWGD-------------------------------EDSVRILTNCRRVMPAHGRV  282 (348)
T ss_dssp             EECCTT-TCCC--CCSEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHTCCTTCEE
T ss_pred             EecCCC-CCCC--CCcEEEEehhccCCCH-------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence            677887 4456  9999999999986432                               23345899999999999999


Q ss_pred             EEEecccCCC
Q 043411          209 FLTFLGRSIA  218 (242)
Q Consensus       209 vl~~~g~~~~  218 (242)
                      ++.....++.
T Consensus       283 ~i~e~~~~~~  292 (348)
T 3lst_A          283 LVIDAVVPEG  292 (348)
T ss_dssp             EEEECCBCSS
T ss_pred             EEEEeccCCC
Confidence            9987765543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.53  E-value=3.4e-07  Score=80.85  Aligned_cols=113  Identities=17%  Similarity=0.157  Sum_probs=67.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcC-----CCCc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDK-----FGPC  124 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~-----~~~~  124 (242)
                      ...+|+|+|||+|..+..+.+        .        +..+++..|+... .-...+      .......     ....
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~--------~--------~~~~v~gvD~s~~-~l~~a~------~~~~~~~~~~~~~~~~   90 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKK--------G--------RINKLVCTDIADV-SVKQCQ------QRYEDMKNRRDSEYIF   90 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHH--------T--------TCSEEEEEESCHH-HHHHHH------HHHHHHHSSSCC-CCC
T ss_pred             CCCEEEEECCCCcHHHHHHHh--------c--------CCCEEEEEeCCHH-HHHHHH------HHHHHhhhcccccccc
Confidence            467999999999999876652        1        1356777776521 111111      1110000     0000


Q ss_pred             eeecccccccccc----C--CCCceeEEEcccceeec-ccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHH
Q 043411          125 FIAGMLGSFYQRL----F--PSRGINFIHSSYSVHWL-SKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSL  197 (242)
Q Consensus       125 f~~~vpgSFy~~l----~--p~~svdl~~Ss~alhWL-s~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~  197 (242)
                      -+..+.++...-.    +  +++++|+++|..++||+ .+.                              .|...+|+.
T Consensus        91 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~------------------------------~~~~~~l~~  140 (313)
T 3bgv_A           91 SAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESY------------------------------EQADMMLRN  140 (313)
T ss_dssp             EEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSH------------------------------HHHHHHHHH
T ss_pred             eEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCH------------------------------HHHHHHHHH
Confidence            1122334553322    4  35699999999999997 321                              234458888


Q ss_pred             HHhhhccCceEEEEeccc
Q 043411          198 RSEEIVSGGRMFLTFLGR  215 (242)
Q Consensus       198 Ra~EL~pGG~lvl~~~g~  215 (242)
                      -++-|+|||++++++++.
T Consensus       141 ~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          141 ACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             HHTTEEEEEEEEEEEECH
T ss_pred             HHHHhCCCcEEEEecCCh
Confidence            889999999999999854

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.53  E-value=5.8e-07  Score=80.10  Aligned_cols=112  Identities=20%  Similarity=0.134  Sum_probs=71.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+++..               |..+++.-|+|  +.-...+.      ....... .--+..+
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~---------------p~~~~~~~D~~--~~~~~a~~------~~~~~~~-~~~v~~~  224 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAH---------------EDLSGTVLDLQ--GPASAAHR------RFLDTGL-SGRAQVV  224 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHC---------------TTCEEEEEECH--HHHHHHHH------HHHHTTC-TTTEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHC---------------CCCeEEEecCH--HHHHHHHH------hhhhcCc-CcCeEEe
Confidence            46899999999998877665221               34566666886  33322221      1111000 1113346


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .++|+ .-+|. +.|++++.+++|.+++                               .+...+|+.-++-|+|||+|+
T Consensus       225 ~~d~~-~~~p~-~~D~v~~~~vlh~~~~-------------------------------~~~~~~l~~~~~~L~pgG~l~  271 (332)
T 3i53_A          225 VGSFF-DPLPA-GAGGYVLSAVLHDWDD-------------------------------LSAVAILRRCAEAAGSGGVVL  271 (332)
T ss_dssp             ECCTT-SCCCC-SCSEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHHTTTCEEE
T ss_pred             cCCCC-CCCCC-CCcEEEEehhhccCCH-------------------------------HHHHHHHHHHHHhcCCCCEEE
Confidence            67887 34565 8999999999985432                               233458888888999999999


Q ss_pred             EEecccCCC
Q 043411          210 LTFLGRSIA  218 (242)
Q Consensus       210 l~~~g~~~~  218 (242)
                      +...-.++.
T Consensus       272 i~e~~~~~~  280 (332)
T 3i53_A          272 VIEAVAGDE  280 (332)
T ss_dssp             EEECCCC--
T ss_pred             EEeecCCCC
Confidence            987765543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.52  E-value=1.4e-07  Score=79.37  Aligned_cols=106  Identities=16%  Similarity=0.173  Sum_probs=69.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+.                 ..+++.-|+.. +.-...+...         ...+  +..+
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~-----------------~~~v~~vD~s~-~~~~~a~~~~---------~~~~--~~~~  103 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRT-----------------GYKAVGVDISE-VMIQKGKERG---------EGPD--LSFI  103 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-----------------TCEEEEEESCH-HHHHHHHTTT---------CBTT--EEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHc-----------------CCeEEEEECCH-HHHHHHHhhc---------ccCC--ceEE
Confidence            4579999999999988766521                 14666667641 1111111110         0011  1223


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+--+|++++|++++..++||+.+..                                 .+|+.-.+-|+|||+++
T Consensus       104 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~---------------------------------~~l~~~~~~L~pgG~l~  150 (242)
T 3l8d_A          104 KGDLSSLPFENEQFEAIMAINSLEWTEEPL---------------------------------RALNEIKRVLKSDGYAC  150 (242)
T ss_dssp             ECBTTBCSSCTTCEEEEEEESCTTSSSCHH---------------------------------HHHHHHHHHEEEEEEEE
T ss_pred             EcchhcCCCCCCCccEEEEcChHhhccCHH---------------------------------HHHHHHHHHhCCCeEEE
Confidence            446655557899999999999999863311                                 27777778899999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      ++.++...
T Consensus       151 i~~~~~~~  158 (242)
T 3l8d_A          151 IAILGPTA  158 (242)
T ss_dssp             EEEECTTC
T ss_pred             EEEcCCcc
Confidence            99976654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.52  E-value=1.9e-07  Score=77.94  Aligned_cols=121  Identities=9%  Similarity=-0.026  Sum_probs=68.4

Q ss_pred             HHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhH
Q 043411           34 PFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFY  113 (242)
Q Consensus        34 ~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~  113 (242)
                      |.+.+.+..+.   .+...+|+|+|||+|.++..+.+        +         -.+|+--|+.. ..-...+      
T Consensus         9 ~~l~~~~~~l~---~~~~~~vLD~GCG~G~~~~~la~--------~---------g~~V~gvD~S~-~~l~~a~------   61 (203)
T 1pjz_A            9 KDLQQYWSSLN---VVPGARVLVPLCGKSQDMSWLSG--------Q---------GYHVVGAELSE-AAVERYF------   61 (203)
T ss_dssp             HHHHHHHHHHC---CCTTCEEEETTTCCSHHHHHHHH--------H---------CCEEEEEEECH-HHHHHHH------
T ss_pred             HHHHHHHHhcc---cCCCCEEEEeCCCCcHhHHHHHH--------C---------CCeEEEEeCCH-HHHHHHH------
Confidence            44555554432   23467999999999999887652        1         14566666552 1111111      


Q ss_pred             Hhhhhc------------CCCCceeeccccccccccCCC-CceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHH
Q 043411          114 ERIKKD------------KFGPCFIAGMLGSFYQRLFPS-RGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVC  180 (242)
Q Consensus       114 ~~l~~~------------~~~~~f~~~vpgSFy~~l~p~-~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~  180 (242)
                      ......            ...+  +..+-+++.+--+++ +++|+|++..++|++..                       
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~--v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~-----------------------  116 (203)
T 1pjz_A           62 TERGEQPHITSQGDFKVYAAPG--IEIWCGDFFALTARDIGHCAAFYDRAAMIALPA-----------------------  116 (203)
T ss_dssp             HHHCSCSEEEEETTEEEEECSS--SEEEEECCSSSTHHHHHSEEEEEEESCGGGSCH-----------------------
T ss_pred             HHccCCcccccccccccccCCc--cEEEECccccCCcccCCCEEEEEECcchhhCCH-----------------------
Confidence            110000            0011  112334664433343 79999999999998632                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCceEEEEecc
Q 043411          181 QAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       181 ~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                              .+...+++.-++-|+|||++++.++.
T Consensus       117 --------~~~~~~l~~~~r~LkpgG~~~l~~~~  142 (203)
T 1pjz_A          117 --------DMRERYVQHLEALMPQACSGLLITLE  142 (203)
T ss_dssp             --------HHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred             --------HHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence                    13334777777888999995555443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.52  E-value=3.1e-07  Score=78.01  Aligned_cols=107  Identities=11%  Similarity=0.001  Sum_probs=67.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~  128 (242)
                      ...+|+|+|||+|..+..+.+..                ..+++--|+.. ++....+.      ....... .+  +..
T Consensus        36 ~~~~VLDiGcG~G~~~~~la~~~----------------~~~v~gvD~s~-~~l~~a~~------~~~~~~~~~~--v~~   90 (256)
T 1nkv_A           36 PGTRILDLGSGSGEMLCTWARDH----------------GITGTGIDMSS-LFTAQAKR------RAEELGVSER--VHF   90 (256)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHT----------------CCEEEEEESCH-HHHHHHHH------HHHHTTCTTT--EEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc----------------CCeEEEEeCCH-HHHHHHHH------HHHhcCCCcc--eEE
Confidence            45799999999999888765322                14566666642 22222211      1111010 11  223


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+-. +++++|+++|..++|++.+.+.                                 +|+.-.+-|+|||++
T Consensus        91 ~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~---------------------------------~l~~~~r~LkpgG~l  136 (256)
T 1nkv_A           91 IHNDAAGYV-ANEKCDVAACVGATWIAGGFAG---------------------------------AEELLAQSLKPGGIM  136 (256)
T ss_dssp             EESCCTTCC-CSSCEEEEEEESCGGGTSSSHH---------------------------------HHHHHTTSEEEEEEE
T ss_pred             EECChHhCC-cCCCCCEEEECCChHhcCCHHH---------------------------------HHHHHHHHcCCCeEE
Confidence            445775433 3889999999999998654222                                 777778889999999


Q ss_pred             EEEeccc
Q 043411          209 FLTFLGR  215 (242)
Q Consensus       209 vl~~~g~  215 (242)
                      +++....
T Consensus       137 ~~~~~~~  143 (256)
T 1nkv_A          137 LIGEPYW  143 (256)
T ss_dssp             EEEEEEE
T ss_pred             EEecCcc
Confidence            9987644

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.52  E-value=1.5e-07  Score=81.16  Aligned_cols=110  Identities=15%  Similarity=0.250  Sum_probs=71.1

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+..               |..+++--|+.. +.-...+      .........+  +..
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~---------------~~~~v~~vD~s~-~~~~~a~------~~~~~~~~~~--~~~   91 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNN---------------PDAEITSIDISP-ESLEKAR------ENTEKNGIKN--VKF   91 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHC---------------TTSEEEEEESCH-HHHHHHH------HHHHHTTCCS--EEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhC---------------CCCEEEEEECCH-HHHHHHH------HHHHHcCCCC--cEE
Confidence            456899999999998887665221               346777777752 1111111      1111111122  223


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.++..+-.++++++|+|++..++||+.+.+.                                 +|+.-.+-|+|||++
T Consensus        92 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~---------------------------------~l~~~~~~L~pgG~l  138 (276)
T 3mgg_A           92 LQANIFSLPFEDSSFDHIFVCFVLEHLQSPEE---------------------------------ALKSLKKVLKPGGTI  138 (276)
T ss_dssp             EECCGGGCCSCTTCEEEEEEESCGGGCSCHHH---------------------------------HHHHHHHHEEEEEEE
T ss_pred             EEcccccCCCCCCCeeEEEEechhhhcCCHHH---------------------------------HHHHHHHHcCCCcEE
Confidence            44577666678999999999999999754322                                 677777888999999


Q ss_pred             EEEeccc
Q 043411          209 FLTFLGR  215 (242)
Q Consensus       209 vl~~~g~  215 (242)
                      ++.....
T Consensus       139 ~~~~~~~  145 (276)
T 3mgg_A          139 TVIEGDH  145 (276)
T ss_dssp             EEEEECG
T ss_pred             EEEEcCC
Confidence            9987644

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.52  E-value=2.1e-07  Score=77.23  Aligned_cols=113  Identities=14%  Similarity=0.132  Sum_probs=73.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..              .|..+++.-|+.. +.-...+      .........+  +..+
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~--------------~~~~~v~~vD~s~-~~~~~a~------~~~~~~~~~~--~~~~   93 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMV--------------GEKGKVYAIDVQE-EMVNYAW------EKVNKLGLKN--VEVL   93 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHH--------------TTTCEEEEEESCH-HHHHHHH------HHHHHHTCTT--EEEE
T ss_pred             CCCEEEEEecCCCHHHHHHHHHh--------------CCCcEEEEEECCH-HHHHHHH------HHHHHcCCCc--EEEE
Confidence            45799999999999988776332              1346777777742 1111111      1111111112  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++..--++++++|+++++.++||+.+.                                 ..+|+.-.+-|+|||+++
T Consensus        94 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~~---------------------------------~~~l~~~~~~LkpgG~l~  140 (219)
T 3dh0_A           94 KSEENKIPLPDNTVDFIFMAFTFHELSEP---------------------------------LKFLEELKRVAKPFAYLA  140 (219)
T ss_dssp             ECBTTBCSSCSSCEEEEEEESCGGGCSSH---------------------------------HHHHHHHHHHEEEEEEEE
T ss_pred             ecccccCCCCCCCeeEEEeehhhhhcCCH---------------------------------HHHHHHHHHHhCCCeEEE
Confidence            44665555788999999999999997431                                 127777778899999999


Q ss_pred             EEecccCCC
Q 043411          210 LTFLGRSIA  218 (242)
Q Consensus       210 l~~~g~~~~  218 (242)
                      +..+.....
T Consensus       141 i~~~~~~~~  149 (219)
T 3dh0_A          141 IIDWKKEER  149 (219)
T ss_dssp             EEEECSSCC
T ss_pred             EEEeccccc
Confidence            998876654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.51  E-value=1e-06  Score=77.25  Aligned_cols=117  Identities=12%  Similarity=0.087  Sum_probs=73.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..               + .+|+--|+.. ..-...+      ......... --+..+
T Consensus        72 ~~~~vLDiGcG~G~~~~~la~~~---------------~-~~v~gvD~s~-~~~~~a~------~~~~~~~~~-~~v~~~  127 (302)
T 3hem_A           72 PGMTLLDIGCGWGSTMRHAVAEY---------------D-VNVIGLTLSE-NQYAHDK------AMFDEVDSP-RRKEVR  127 (302)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH---------------C-CEEEEEECCH-HHHHHHH------HHHHHSCCS-SCEEEE
T ss_pred             CcCEEEEeeccCcHHHHHHHHhC---------------C-CEEEEEECCH-HHHHHHH------HHHHhcCCC-CceEEE
Confidence            45799999999999988776332               2 5677777642 1111111      111111111 012223


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++. .+  ++++|+|+|..++|++.+.... .   |                    .+++..+|+.-.+-|+|||+++
T Consensus       128 ~~d~~-~~--~~~fD~v~~~~~~~~~~d~~~~-~---~--------------------~~~~~~~l~~~~~~LkpgG~l~  180 (302)
T 3hem_A          128 IQGWE-EF--DEPVDRIVSLGAFEHFADGAGD-A---G--------------------FERYDTFFKKFYNLTPDDGRML  180 (302)
T ss_dssp             ECCGG-GC--CCCCSEEEEESCGGGTTCCSSC-C---C--------------------TTHHHHHHHHHHHSSCTTCEEE
T ss_pred             ECCHH-Hc--CCCccEEEEcchHHhcCccccc-c---c--------------------hhHHHHHHHHHHHhcCCCcEEE
Confidence            34553 33  8899999999999998764210 0   0                    0356668989999999999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      +..+....
T Consensus       181 i~~~~~~~  188 (302)
T 3hem_A          181 LHTITIPD  188 (302)
T ss_dssp             EEEEECCC
T ss_pred             EEEEeccC
Confidence            99987654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.51  E-value=2.7e-07  Score=76.37  Aligned_cols=105  Identities=15%  Similarity=0.243  Sum_probs=68.6

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+.                 ..+++.-|+.. +.-...+      ...     +-.   .
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~-----------------~~~v~~vD~s~-~~~~~a~------~~~-----~~~---~   89 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAA-----------------GFDVDATDGSP-ELAAEAS------RRL-----GRP---V   89 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHT-----------------TCEEEEEESCH-HHHHHHH------HHH-----TSC---C
T ss_pred             CCCCcEEEECCCCCHHHHHHHHc-----------------CCeEEEECCCH-HHHHHHH------Hhc-----CCc---e
Confidence            34579999999999988766521                 14666666641 1111111      111     111   2


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++. .+-+++++|++++..++|++..                               .|+..+|+.-.+-|+|||++
T Consensus        90 ~~~d~~-~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l  137 (211)
T 3e23_A           90 RTMLFH-QLDAIDAYDAVWAHACLLHVPR-------------------------------DELADVLKLIWRALKPGGLF  137 (211)
T ss_dssp             EECCGG-GCCCCSCEEEEEECSCGGGSCH-------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             EEeeec-cCCCCCcEEEEEecCchhhcCH-------------------------------HHHHHHHHHHHHhcCCCcEE
Confidence            334653 3448999999999999998541                               34555888888899999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++++.....
T Consensus       138 ~~~~~~~~~  146 (211)
T 3e23_A          138 YASYKSGEG  146 (211)
T ss_dssp             EEEEECCSS
T ss_pred             EEEEcCCCc
Confidence            999875543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.51  E-value=2.4e-07  Score=81.27  Aligned_cols=109  Identities=17%  Similarity=0.242  Sum_probs=68.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhc--CCCCceee
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKD--KFGPCFIA  127 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~--~~~~~f~~  127 (242)
                      ...+|+|+|||+|..+..+.+..              .+..+|+..|+.. .+-...+..      ....  ...++  .
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~-~~~~~a~~~------~~~~~~~~~~v--~   92 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQEL--------------KPFEQIIGSDLSA-TMIKTAEVI------KEGSPDTYKNV--S   92 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHS--------------SCCSEEEEEESCH-HHHHHHHHH------HHHCC-CCTTE--E
T ss_pred             CCCEEEEECCCCCHHHHHHHHhC--------------CCCCEEEEEeCCH-HHHHHHHHH------HHhccCCCCce--E
Confidence            46899999999999988776321              0246777777752 122221111      1000  01121  1


Q ss_pred             ccccccccccCCC------CceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 043411          128 GMLGSFYQRLFPS------RGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEE  201 (242)
Q Consensus       128 ~vpgSFy~~l~p~------~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~E  201 (242)
                      .+.+++.+-.++.      +++|+|++..++||+ +.+                                 .+|+.-.+-
T Consensus        93 ~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~---------------------------------~~l~~~~~~  138 (299)
T 3g5t_A           93 FKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DFE---------------------------------KFQRSAYAN  138 (299)
T ss_dssp             EEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-CHH---------------------------------HHHHHHHHH
T ss_pred             EEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-CHH---------------------------------HHHHHHHHh
Confidence            2334554434555      899999999999997 322                                 277778888


Q ss_pred             hccCceEEEEeccc
Q 043411          202 IVSGGRMFLTFLGR  215 (242)
Q Consensus       202 L~pGG~lvl~~~g~  215 (242)
                      |+|||+|++..++.
T Consensus       139 LkpgG~l~i~~~~~  152 (299)
T 3g5t_A          139 LRKDGTIAIWGYAD  152 (299)
T ss_dssp             EEEEEEEEEEEEEE
T ss_pred             cCCCcEEEEEecCC
Confidence            99999999966654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.50  E-value=9.9e-07  Score=79.02  Aligned_cols=113  Identities=12%  Similarity=0.156  Sum_probs=75.8

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..+..+.+..               |..+++.-|+|  +.-...+...      .... -.--+..+.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~---------------p~~~~~~~D~~--~~~~~a~~~~------~~~~-~~~~v~~~~  235 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRH---------------PQLTGQIWDLP--TTRDAARKTI------HAHD-LGGRVEFFE  235 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHC---------------TTCEEEEEECG--GGHHHHHHHH------HHTT-CGGGEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhC---------------CCCeEEEEECH--HHHHHHHHHH------HhcC-CCCceEEEe
Confidence            6899999999999887776221               34778888986  3333322211      1000 011233567


Q ss_pred             ccccccc-CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          131 GSFYQRL-FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       131 gSFy~~l-~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      ++|++.. ++++.+|++++...+|++++                               .+...+|+.-.+-|+|||+++
T Consensus       236 ~d~~~~~~~~~~~~D~v~~~~vlh~~~~-------------------------------~~~~~~l~~~~~~L~pgG~l~  284 (352)
T 3mcz_A          236 KNLLDARNFEGGAADVVMLNDCLHYFDA-------------------------------REAREVIGHAAGLVKPGGALL  284 (352)
T ss_dssp             CCTTCGGGGTTCCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHTEEEEEEEE
T ss_pred             CCcccCcccCCCCccEEEEecccccCCH-------------------------------HHHHHHHHHHHHHcCCCCEEE
Confidence            7887543 26677999999999997533                               234458988899999999999


Q ss_pred             EEecccCCC
Q 043411          210 LTFLGRSIA  218 (242)
Q Consensus       210 l~~~g~~~~  218 (242)
                      +.....++.
T Consensus       285 i~e~~~~~~  293 (352)
T 3mcz_A          285 ILTMTMNDD  293 (352)
T ss_dssp             EEEECCCTT
T ss_pred             EEEeccCCC
Confidence            988766543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.50  E-value=3.9e-07  Score=78.37  Aligned_cols=111  Identities=19%  Similarity=0.255  Sum_probs=71.1

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..++.+.+               . +..+|+--|+.. ..-...+      .........+ -+..
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~---------------~-~~~~v~gvD~s~-~~~~~a~------~~~~~~~~~~-~v~~  100 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAG---------------H-VTGQVTGLDFLS-GFIDIFN------RNARQSGLQN-RVTG  100 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHT---------------T-CSSEEEEEESCH-HHHHHHH------HHHHHTTCTT-TEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHh---------------c-cCCEEEEEeCCH-HHHHHHH------HHHHHcCCCc-CcEE
Confidence            3568999999999998887651               1 235777778752 1111111      1111111111 1223


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+--++++++|+|+|..++|++ ..                                 ..+|+.-.+-|+|||++
T Consensus       101 ~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~---------------------------------~~~l~~~~~~LkpgG~l  146 (267)
T 3kkz_A          101 IVGSMDDLPFRNEELDLIWSEGAIYNI-GF---------------------------------ERGLNEWRKYLKKGGYL  146 (267)
T ss_dssp             EECCTTSCCCCTTCEEEEEESSCGGGT-CH---------------------------------HHHHHHHGGGEEEEEEE
T ss_pred             EEcChhhCCCCCCCEEEEEEcCCceec-CH---------------------------------HHHHHHHHHHcCCCCEE
Confidence            445664544678999999999999996 21                                 12788888899999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      +++.+....
T Consensus       147 ~~~~~~~~~  155 (267)
T 3kkz_A          147 AVSECSWFT  155 (267)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEeeecC
Confidence            999886543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.50  E-value=2.4e-07  Score=77.07  Aligned_cols=115  Identities=15%  Similarity=0.156  Sum_probs=72.1

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCC---Cce
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFG---PCF  125 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~---~~f  125 (242)
                      +...+|+|+|||+|..+..+.+.                 ..+++.-|+.. +.-...+      .........   ...
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~-----------------~~~v~~vD~s~-~~~~~a~------~~~~~~~~~~~~~~~   84 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK-----------------GYSVTGIDINS-EAIRLAE------TAARSPGLNQKTGGK   84 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-----------------TCEEEEEESCH-HHHHHHH------HHTTCCSCCSSSSCE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC-----------------CCeEEEEECCH-HHHHHHH------HHHHhcCCccccCcc
Confidence            35679999999999988766521                 14677777642 1111111      111100000   012


Q ss_pred             eeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          126 IAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       126 ~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      +..+.+++..--++++++|++++..++|++.+.                              .++..+|+.-.+-|+||
T Consensus        85 ~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~------------------------------~~~~~~l~~~~~~L~pg  134 (235)
T 3sm3_A           85 AEFKVENASSLSFHDSSFDFAVMQAFLTSVPDP------------------------------KERSRIIKEVFRVLKPG  134 (235)
T ss_dssp             EEEEECCTTSCCSCTTCEEEEEEESCGGGCCCH------------------------------HHHHHHHHHHHHHEEEE
T ss_pred             eEEEEecccccCCCCCceeEEEEcchhhcCCCH------------------------------HHHHHHHHHHHHHcCCC
Confidence            333445665555788999999999999986542                              12334788888889999


Q ss_pred             ceEEEEecccCC
Q 043411          206 GRMFLTFLGRSI  217 (242)
Q Consensus       206 G~lvl~~~g~~~  217 (242)
                      |+|+++.+++..
T Consensus       135 G~l~~~~~~~~~  146 (235)
T 3sm3_A          135 AYLYLVEFGQNW  146 (235)
T ss_dssp             EEEEEEEEBCCT
T ss_pred             eEEEEEECCcch
Confidence            999999887743

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.49  E-value=3.1e-07  Score=76.47  Aligned_cols=115  Identities=17%  Similarity=0.039  Sum_probs=67.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+        +       .+..+++--|+.. +.-...+.... ...+......+  +..+
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~--------~-------~~~~~v~gvD~s~-~~~~~a~~~~~-~~~~~~~~~~~--v~~~   89 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLK--------D-------KSFEQITGVDVSY-SVLERAKDRLK-IDRLPEMQRKR--ISLF   89 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHT--------S-------TTCCEEEEEESCH-HHHHHHHHHHT-GGGSCHHHHTT--EEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHh--------c-------CCCCEEEEEECCH-HHHHHHHHHHH-hhccccccCcc--eEEE
Confidence            357999999999998876652        1       1336778778752 11111111000 00000000001  1123


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      -+++....++++++|+|++..++||+..                               .++..+|+.-.+-|+|||+++
T Consensus        90 ~~d~~~~~~~~~~fD~V~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~~i  138 (219)
T 3jwg_A           90 QSSLVYRDKRFSGYDAATVIEVIEHLDE-------------------------------NRLQAFEKVLFEFTRPQTVIV  138 (219)
T ss_dssp             ECCSSSCCGGGTTCSEEEEESCGGGCCH-------------------------------HHHHHHHHHHHTTTCCSEEEE
T ss_pred             eCcccccccccCCCCEEEEHHHHHhCCH-------------------------------HHHHHHHHHHHHhhCCCEEEE
Confidence            3455444556789999999999999732                               234458888889999999666


Q ss_pred             EEecc
Q 043411          210 LTFLG  214 (242)
Q Consensus       210 l~~~g  214 (242)
                      .+...
T Consensus       139 ~~~~~  143 (219)
T 3jwg_A          139 STPNK  143 (219)
T ss_dssp             EEEBG
T ss_pred             Eccch
Confidence            55443

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.49  E-value=6.8e-07  Score=73.43  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=69.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++..+.       +         +..+++.-|... +.-...+      ........+-.+   +
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~-------~---------~~~~v~~vD~s~-~~~~~a~------~~~~~~~~~~~~---~   76 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFV-------E---------DGYKTYGIEISD-LQLKKAE------NFSRENNFKLNI---S   76 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHH-------H---------TTCEEEEEECCH-HHHHHHH------HHHHHHTCCCCE---E
T ss_pred             CCCEEEEECCCCCHHHHHHHH-------h---------CCCEEEEEECCH-HHHHHHH------HHHHhcCCceEE---E
Confidence            457999999999998765441       1         125677777642 1111111      111111111122   3


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+--+|++++|++++..++|+++   .                            .|...+|+.-.+-|+|||+++
T Consensus        77 ~~d~~~~~~~~~~fD~v~~~~~l~~~~---~----------------------------~~~~~~l~~~~~~LkpgG~l~  125 (209)
T 2p8j_A           77 KGDIRKLPFKDESMSFVYSYGTIFHMR---K----------------------------NDVKEAIDEIKRVLKPGGLAC  125 (209)
T ss_dssp             ECCTTSCCSCTTCEEEEEECSCGGGSC---H----------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             ECchhhCCCCCCceeEEEEcChHHhCC---H----------------------------HHHHHHHHHHHHHcCCCcEEE
Confidence            335544446789999999998888852   1                            244557888888899999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      +..+...+
T Consensus       126 ~~~~~~~~  133 (209)
T 2p8j_A          126 INFLTTKD  133 (209)
T ss_dssp             EEEEETTS
T ss_pred             EEEecccc
Confidence            99998654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.47  E-value=7.9e-07  Score=80.78  Aligned_cols=104  Identities=22%  Similarity=0.250  Sum_probs=71.8

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+..               |..+++.-|+|  +.-...+.+            ++  +..
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~---------------~~~~~~~~D~~--~~~~~a~~~------------~~--v~~  256 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKY---------------PLIKGINFDLP--QVIENAPPL------------SG--IEH  256 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC---------------TTCEEEEEECH--HHHTTCCCC------------TT--EEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHC---------------CCCeEEEeChH--HHHHhhhhc------------CC--CEE
Confidence            456899999999999888765221               35777777875  322222111            12  335


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.++|++ -+|.  .|++++..++|++++                               .+...+|+.-.+-|+|||+|
T Consensus       257 ~~~d~~~-~~~~--~D~v~~~~~lh~~~d-------------------------------~~~~~~l~~~~~~L~pgG~l  302 (372)
T 1fp1_D          257 VGGDMFA-SVPQ--GDAMILKAVCHNWSD-------------------------------EKCIEFLSNCHKALSPNGKV  302 (372)
T ss_dssp             EECCTTT-CCCC--EEEEEEESSGGGSCH-------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             EeCCccc-CCCC--CCEEEEecccccCCH-------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence            6778877 4565  899999999997443                               12334888888999999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++..+..++
T Consensus       303 ~i~e~~~~~  311 (372)
T 1fp1_D          303 IIVEFILPE  311 (372)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEeccCC
Confidence            999776544

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.47  E-value=5.1e-07  Score=79.31  Aligned_cols=109  Identities=17%  Similarity=0.117  Sum_probs=67.9

Q ss_pred             ccEEeeecCCC---CcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceee
Q 043411           51 CFNVADLGCSS---GPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIA  127 (242)
Q Consensus        51 ~~~IaDlGCs~---G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~  127 (242)
                      .-+|+|+|||+   |..+. .+.       +.       .|..+|+.-|+.. ..-.+-+.      .+..  ..+  +.
T Consensus        78 ~~~vLDlGcG~pt~G~~~~-~~~-------~~-------~p~~~v~~vD~sp-~~l~~Ar~------~~~~--~~~--v~  131 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHE-VAQ-------SV-------NPDARVVYVDIDP-MVLTHGRA------LLAK--DPN--TA  131 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHH-HHH-------HH-------CTTCEEEEEESSH-HHHHHHHH------HHTT--CTT--EE
T ss_pred             CCEEEEECCCCCCCChHHH-HHH-------Hh-------CCCCEEEEEECCh-HHHHHHHH------hcCC--CCC--eE
Confidence            47999999999   95432 221       11       1347788888741 22222221      1110  112  22


Q ss_pred             cccccccc-----------ccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHH
Q 043411          128 GMLGSFYQ-----------RLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLS  196 (242)
Q Consensus       128 ~vpgSFy~-----------~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~  196 (242)
                      .+.+++.+           ..++.++.|++++..++||+.+-                               +...+|+
T Consensus       132 ~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~-------------------------------~~~~~l~  180 (274)
T 2qe6_A          132 VFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPD-------------------------------VVDRVVG  180 (274)
T ss_dssp             EEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTT-------------------------------THHHHHH
T ss_pred             EEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcH-------------------------------HHHHHHH
Confidence            34557753           23555689999999999998652                               1122777


Q ss_pred             HHHhhhccCceEEEEecccC
Q 043411          197 LRSEEIVSGGRMFLTFLGRS  216 (242)
Q Consensus       197 ~Ra~EL~pGG~lvl~~~g~~  216 (242)
                      .-++-|+|||+|+++.+..+
T Consensus       181 ~~~~~L~pGG~l~i~~~~~~  200 (274)
T 2qe6_A          181 AYRDALAPGSYLFMTSLVDT  200 (274)
T ss_dssp             HHHHHSCTTCEEEEEEEBCS
T ss_pred             HHHHhCCCCcEEEEEEecCc
Confidence            77888999999999998864

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.47  E-value=2.4e-07  Score=76.95  Aligned_cols=106  Identities=19%  Similarity=0.210  Sum_probs=67.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+        +         ..+++.-|+.. +.-...+      ...   . .+  +..+
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~~vD~s~-~~~~~a~------~~~---~-~~--~~~~   94 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLL--------A---------GRTVYGIEPSR-EMRMIAK------EKL---P-KE--FSIT   94 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHH--------T---------TCEEEEECSCH-HHHHHHH------HHS---C-TT--CCEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHh--------C---------CCeEEEEeCCH-HHHHHHH------HhC---C-Cc--eEEE
Confidence            457999999999998877652        1         24667777652 1111111      111   0 01  1124


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+-.++ +++|++++..++||+.+.                               +...+|+.-.+-|+|||+++
T Consensus        95 ~~d~~~~~~~-~~fD~v~~~~~l~~~~~~-------------------------------~~~~~l~~~~~~LkpgG~l~  142 (220)
T 3hnr_A           95 EGDFLSFEVP-TSIDTIVSTYAFHHLTDD-------------------------------EKNVAIAKYSQLLNKGGKIV  142 (220)
T ss_dssp             SCCSSSCCCC-SCCSEEEEESCGGGSCHH-------------------------------HHHHHHHHHHHHSCTTCEEE
T ss_pred             eCChhhcCCC-CCeEEEEECcchhcCChH-------------------------------HHHHHHHHHHHhcCCCCEEE
Confidence            4566554455 999999999999996441                               11237777788899999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      ++.+...+
T Consensus       143 i~~~~~~~  150 (220)
T 3hnr_A          143 FADTIFAD  150 (220)
T ss_dssp             EEEECBSS
T ss_pred             EEeccccC
Confidence            99765443

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.47  E-value=3.7e-07  Score=83.58  Aligned_cols=118  Identities=14%  Similarity=0.191  Sum_probs=72.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhH-Hhh-hhcCCCCceee
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFY-ERI-KKDKFGPCFIA  127 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~-~~l-~~~~~~~~f~~  127 (242)
                      ...+|+|+|||+|..++.+.+..           +   +..+|+..|+.. +.-...+...... ... ......+  +.
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~-----------~---~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~g~~~~~~--v~  145 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLV-----------G---EHGKVIGVDMLD-NQLEVARKYVEYHAEKFFGSPSRSN--VR  145 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-----------T---TTCEEEEEECCH-HHHHHHHHTHHHHHHHHHSSTTCCC--EE
T ss_pred             CCCEEEEecCccCHHHHHHHHHh-----------C---CCCEEEEEECCH-HHHHHHHHHHHHhhhhcccccCCCc--eE
Confidence            45799999999999988776332           1   246888888852 2222222111000 000 0000012  22


Q ss_pred             ccccccccc------cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 043411          128 GMLGSFYQR------LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEE  201 (242)
Q Consensus       128 ~vpgSFy~~------l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~E  201 (242)
                      .+.+++.+-      -+|++++|+|+|..++||+.+.+                                 .+|+.-.+-
T Consensus       146 ~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~---------------------------------~~l~~~~r~  192 (383)
T 4fsd_A          146 FLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKL---------------------------------ALFKEIHRV  192 (383)
T ss_dssp             EEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCHH---------------------------------HHHHHHHHH
T ss_pred             EEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCCHH---------------------------------HHHHHHHHH
Confidence            234465433      57889999999999999964422                                 277777788


Q ss_pred             hccCceEEEEecccCC
Q 043411          202 IVSGGRMFLTFLGRSI  217 (242)
Q Consensus       202 L~pGG~lvl~~~g~~~  217 (242)
                      |+|||+|+++.+..+.
T Consensus       193 LkpgG~l~i~~~~~~~  208 (383)
T 4fsd_A          193 LRDGGELYFSDVYADR  208 (383)
T ss_dssp             EEEEEEEEEEEEEESS
T ss_pred             cCCCCEEEEEEecccc
Confidence            8999999999877654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.47  E-value=2.2e-07  Score=78.92  Aligned_cols=109  Identities=16%  Similarity=0.173  Sum_probs=68.0

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+        .    +     .+++..|+.. +.-...+      .........++  ..
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~--------~----~-----~~v~~vD~s~-~~~~~a~------~~~~~~~~~~v--~~   73 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSP--------Y----V-----QECIGVDATK-EMVEVAS------SFAQEKGVENV--RF   73 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGG--------G----S-----SEEEEEESCH-HHHHHHH------HHHHHHTCCSE--EE
T ss_pred             CCCCEEEEEccCcCHHHHHHHH--------h----C-----CEEEEEECCH-HHHHHHH------HHHHHcCCCCe--EE
Confidence            3568999999999998876641        1    1     2566666642 1111111      11111111121  22


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++..--++++++|++++..++||+.+.+                                 .+|+.-.+-|+|||++
T Consensus        74 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~---------------------------------~~l~~~~~~LkpgG~l  120 (239)
T 1xxl_A           74 QQGTAESLPFPDDSFDIITCRYAAHHFSDVR---------------------------------KAVREVARVLKQDGRF  120 (239)
T ss_dssp             EECBTTBCCSCTTCEEEEEEESCGGGCSCHH---------------------------------HHHHHHHHHEEEEEEE
T ss_pred             EecccccCCCCCCcEEEEEECCchhhccCHH---------------------------------HHHHHHHHHcCCCcEE
Confidence            3446655456789999999999999865422                                 2777777889999999


Q ss_pred             EEEecccC
Q 043411          209 FLTFLGRS  216 (242)
Q Consensus       209 vl~~~g~~  216 (242)
                      ++......
T Consensus       121 ~~~~~~~~  128 (239)
T 1xxl_A          121 LLVDHYAP  128 (239)
T ss_dssp             EEEEECBC
T ss_pred             EEEEcCCC
Confidence            99876543

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.47  E-value=3e-07  Score=77.90  Aligned_cols=112  Identities=13%  Similarity=0.078  Sum_probs=68.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+++..                ..+++.-|+.. ..-...+      .......  ..-+..+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~----------------~~~v~~vD~s~-~~~~~a~------~~~~~~~--~~~~~~~  133 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL----------------FREVDMVDITE-DFLVQAK------TYLGEEG--KRVRNYF  133 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT----------------CSEEEEEESCH-HHHHHHH------HHTGGGG--GGEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc----------------CCEEEEEeCCH-HHHHHHH------HHhhhcC--CceEEEE
Confidence            46899999999999887665211                13566666642 1111111      1110000  0112223


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++..-.++++++|++++..++|++.+                               .++..+|+.-.+-|+|||+|+
T Consensus       134 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l~  182 (241)
T 2ex4_A          134 CCGLQDFTPEPDSYDVIWIQWVIGHLTD-------------------------------QHLAEFLRRCKGSLRPNGIIV  182 (241)
T ss_dssp             ECCGGGCCCCSSCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             EcChhhcCCCCCCEEEEEEcchhhhCCH-------------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence            4466555567779999999999988643                               123447888888899999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      ++......
T Consensus       183 i~~~~~~~  190 (241)
T 2ex4_A          183 IKDNMAQE  190 (241)
T ss_dssp             EEEEEBSS
T ss_pred             EEEccCCC
Confidence            98776543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.46  E-value=2.6e-07  Score=81.66  Aligned_cols=111  Identities=13%  Similarity=0.115  Sum_probs=70.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..                ..+|+--|+.. +.-...+      ......... --+..+
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~----------------~~~v~gvD~s~-~~~~~a~------~~~~~~~~~-~~v~~~  172 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRF----------------GSRVEGVTLSA-AQADFGN------RRARELRID-DHVRSR  172 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH----------------CCEEEEEESCH-HHHHHHH------HHHHHTTCT-TTEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHc----------------CCEEEEEeCCH-HHHHHHH------HHHHHcCCC-CceEEE
Confidence            46799999999999988776322                14566666641 1111111      111111101 012234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+--++++++|+|++..++||+.  +.                                .+|+.-.+-|+|||+++
T Consensus       173 ~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~--------------------------------~~l~~~~~~LkpgG~l~  218 (312)
T 3vc1_A          173 VCNMLDTPFDKGAVTASWNNESTMYVD--LH--------------------------------DLFSEHSRFLKVGGRYV  218 (312)
T ss_dssp             ECCTTSCCCCTTCEEEEEEESCGGGSC--HH--------------------------------HHHHHHHHHEEEEEEEE
T ss_pred             ECChhcCCCCCCCEeEEEECCchhhCC--HH--------------------------------HHHHHHHHHcCCCcEEE
Confidence            456655457889999999999999973  21                                17778888899999999


Q ss_pred             EEecccCCC
Q 043411          210 LTFLGRSIA  218 (242)
Q Consensus       210 l~~~g~~~~  218 (242)
                      +........
T Consensus       219 ~~~~~~~~~  227 (312)
T 3vc1_A          219 TITGCWNPR  227 (312)
T ss_dssp             EEEEEECTT
T ss_pred             EEEcccccc
Confidence            998877653

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.46  E-value=1.2e-06  Score=79.56  Aligned_cols=113  Identities=14%  Similarity=0.160  Sum_probs=74.6

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+..               |..+++.-|+|  +.-...+.      ....... .--+..
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~---------------p~~~~~~~D~~--~~~~~a~~------~~~~~~l-~~~v~~  256 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAF---------------PGLRGTLLERP--PVAEEARE------LLTGRGL-ADRCEI  256 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC---------------TTCEEEEEECH--HHHHHHHH------HHHHTTC-TTTEEE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHC---------------CCCeEEEEcCH--HHHHHHHH------hhhhcCc-CCceEE
Confidence            456899999999998877665221               35778888886  33332221      1111000 111334


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.++|+ .-+|. ++|++++...+|++++                               .+...+|+.-++-|+|||+|
T Consensus       257 ~~~d~~-~~~p~-~~D~v~~~~vlh~~~d-------------------------------~~~~~~L~~~~~~L~pgG~l  303 (369)
T 3gwz_A          257 LPGDFF-ETIPD-GADVYLIKHVLHDWDD-------------------------------DDVVRILRRIATAMKPDSRL  303 (369)
T ss_dssp             EECCTT-TCCCS-SCSEEEEESCGGGSCH-------------------------------HHHHHHHHHHHTTCCTTCEE
T ss_pred             eccCCC-CCCCC-CceEEEhhhhhccCCH-------------------------------HHHHHHHHHHHHHcCCCCEE
Confidence            667887 44565 8999999999997543                               12234888889999999999


Q ss_pred             EEEecccCCC
Q 043411          209 FLTFLGRSIA  218 (242)
Q Consensus       209 vl~~~g~~~~  218 (242)
                      ++.....++.
T Consensus       304 ~i~e~~~~~~  313 (369)
T 3gwz_A          304 LVIDNLIDER  313 (369)
T ss_dssp             EEEEEBCCSS
T ss_pred             EEEEeccCCC
Confidence            9988766553

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.46  E-value=3.6e-07  Score=77.59  Aligned_cols=110  Identities=24%  Similarity=0.278  Sum_probs=68.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..               + .+|+.-|+.. ..-...+      .........+ -+..+
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~~~~---------------~-~~v~~vD~s~-~~~~~a~------~~~~~~~~~~-~~~~~  101 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLADYV---------------K-GQITGIDLFP-DFIEIFN------ENAVKANCAD-RVKGI  101 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHC---------------C-SEEEEEESCH-HHHHHHH------HHHHHTTCTT-TEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHhC---------------C-CeEEEEECCH-HHHHHHH------HHHHHcCCCC-ceEEE
Confidence            45699999999999988775221               2 2677777642 1111111      1111111111 12234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++..--++++++|++++..++||+ . |.                                .+|+.-.+-|+|||+++
T Consensus       102 ~~d~~~~~~~~~~fD~v~~~~~l~~~-~-~~--------------------------------~~l~~~~~~L~pgG~l~  147 (257)
T 3f4k_A          102 TGSMDNLPFQNEELDLIWSEGAIYNI-G-FE--------------------------------RGMNEWSKYLKKGGFIA  147 (257)
T ss_dssp             ECCTTSCSSCTTCEEEEEEESCSCCC-C-HH--------------------------------HHHHHHHTTEEEEEEEE
T ss_pred             ECChhhCCCCCCCEEEEEecChHhhc-C-HH--------------------------------HHHHHHHHHcCCCcEEE
Confidence            45664444678999999999999996 2 11                                27777788899999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      ++.+....
T Consensus       148 ~~~~~~~~  155 (257)
T 3f4k_A          148 VSEASWFT  155 (257)
T ss_dssp             EEEEEESS
T ss_pred             EEEeeccC
Confidence            99876433

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.46  E-value=5.4e-07  Score=75.87  Aligned_cols=110  Identities=14%  Similarity=0.081  Sum_probs=69.5

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..+..+.+                 +..+|+.-|+.. ..-...+      ...... ....-+..+.
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~-----------------~~~~v~gvD~s~-~~~~~a~------~~~~~~-~~~~~v~~~~  121 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS-----------------PERFVVGLDISE-SALAKAN------ETYGSS-PKAEYFSFVK  121 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB-----------------TTEEEEEECSCH-HHHHHHH------HHHTTS-GGGGGEEEEC
T ss_pred             CCCEEEeCCCCCHHHHHHHh-----------------CCCeEEEEECCH-HHHHHHH------HHhhcc-CCCcceEEEE
Confidence            46999999999999886631                 236777777752 1111111      111000 0001123345


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      +++. .+.|++++|++++..++||+..  .                             |...+|+.-.+-|+|||+|++
T Consensus       122 ~d~~-~~~~~~~fD~v~~~~~l~~~~~--~-----------------------------~~~~~l~~~~~~LkpgG~l~~  169 (235)
T 3lcc_A          122 EDVF-TWRPTELFDLIFDYVFFCAIEP--E-----------------------------MRPAWAKSMYELLKPDGELIT  169 (235)
T ss_dssp             CCTT-TCCCSSCEEEEEEESSTTTSCG--G-----------------------------GHHHHHHHHHHHEEEEEEEEE
T ss_pred             Cchh-cCCCCCCeeEEEEChhhhcCCH--H-----------------------------HHHHHHHHHHHHCCCCcEEEE
Confidence            5764 4557889999999999999741  1                             233478778888999999999


Q ss_pred             EecccCC
Q 043411          211 TFLGRSI  217 (242)
Q Consensus       211 ~~~g~~~  217 (242)
                      ..+....
T Consensus       170 ~~~~~~~  176 (235)
T 3lcc_A          170 LMYPITD  176 (235)
T ss_dssp             EECCCSC
T ss_pred             EEecccc
Confidence            8886654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.45  E-value=2.4e-07  Score=77.61  Aligned_cols=108  Identities=15%  Similarity=0.170  Sum_probs=67.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+.                 ..+++.-|+.. ..-...      +........   -+..+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~-----------------~~~~~~~D~s~-~~~~~a------~~~~~~~~~---~~~~~   89 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK-----------------FKNTWAVDLSQ-EMLSEA------ENKFRSQGL---KPRLA   89 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG-----------------SSEEEEECSCH-HHHHHH------HHHHHHTTC---CCEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC-----------------CCcEEEEECCH-HHHHHH------HHHHhhcCC---CeEEE
Confidence            5689999999999998866521                 13566667642 111111      111111111   12234


Q ss_pred             ccccccccCCCCceeEEEccc-ceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          130 LGSFYQRLFPSRGINFIHSSY-SVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~-alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      .+++.+-.++ +++|++++.. ++||+...                              .|...+|+.-++-|+|||++
T Consensus        90 ~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~------------------------------~~~~~~l~~~~~~L~pgG~l  138 (246)
T 1y8c_A           90 CQDISNLNIN-RKFDLITCCLDSTNYIIDS------------------------------DDLKKYFKAVSNHLKEGGVF  138 (246)
T ss_dssp             CCCGGGCCCS-CCEEEEEECTTGGGGCCSH------------------------------HHHHHHHHHHHTTEEEEEEE
T ss_pred             ecccccCCcc-CCceEEEEcCccccccCCH------------------------------HHHHHHHHHHHHhcCCCcEE
Confidence            4566443344 8999999998 99986321                              24555888889999999999


Q ss_pred             EEEeccc
Q 043411          209 FLTFLGR  215 (242)
Q Consensus       209 vl~~~g~  215 (242)
                      ++.+...
T Consensus       139 ~~~~~~~  145 (246)
T 1y8c_A          139 IFDINSY  145 (246)
T ss_dssp             EEEEECH
T ss_pred             EEEecCH
Confidence            9987653

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.44  E-value=7.3e-07  Score=74.18  Aligned_cols=111  Identities=16%  Similarity=0.037  Sum_probs=66.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCC---cee
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGP---CFI  126 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~---~f~  126 (242)
                      ...+|+|+|||+|..+..+.+        +       .+..+++.-|+.. ..-...+      ..+.......   .-+
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~--------~-------~~~~~v~gvD~s~-~~~~~a~------~~~~~~~~~~~~~~~v   86 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLK--------D-------SFFEQITGVDVSY-RSLEIAQ------ERLDRLRLPRNQWERL   86 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHH--------C-------TTCSEEEEEESCH-HHHHHHH------HHHTTCCCCHHHHTTE
T ss_pred             CCCEEEEeCCCCCHHHHHHHh--------h-------CCCCEEEEEECCH-HHHHHHH------HHHHHhcCCcccCcce
Confidence            357999999999998887652        1       1235777777752 1111111      1111000000   011


Q ss_pred             eccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          127 AGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       127 ~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      ..+.+++...-++.+++|++++..++||+.+                               .++..+|+.-.+-|+|||
T Consensus        87 ~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG  135 (217)
T 3jwh_A           87 QLIQGALTYQDKRFHGYDAATVIEVIEHLDL-------------------------------SRLGAFERVLFEFAQPKI  135 (217)
T ss_dssp             EEEECCTTSCCGGGCSCSEEEEESCGGGCCH-------------------------------HHHHHHHHHHHTTTCCSE
T ss_pred             EEEeCCcccccccCCCcCEEeeHHHHHcCCH-------------------------------HHHHHHHHHHHHHcCCCE
Confidence            2233455344456689999999999999732                               234458888889999999


Q ss_pred             eEEEEec
Q 043411          207 RMFLTFL  213 (242)
Q Consensus       207 ~lvl~~~  213 (242)
                      +++++..
T Consensus       136 ~li~~~~  142 (217)
T 3jwh_A          136 VIVTTPN  142 (217)
T ss_dssp             EEEEEEB
T ss_pred             EEEEccC
Confidence            7777654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.44  E-value=4.9e-07  Score=77.41  Aligned_cols=105  Identities=16%  Similarity=0.171  Sum_probs=66.9

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+        .         -.+++.-|+.. +.-...+      ...    .+-.|   
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~gvD~s~-~~~~~a~------~~~----~~~~~---   97 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLAD--------S---------FGTVEGLELSA-DMLAIAR------RRN----PDAVL---   97 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTT--------T---------SSEEEEEESCH-HHHHHHH------HHC----TTSEE---
T ss_pred             CCCCcEEEeCCcCCHHHHHHHH--------c---------CCeEEEEECCH-HHHHHHH------hhC----CCCEE---
Confidence            4468999999999998876641        1         13566666641 1111111      111    01122   


Q ss_pred             cccccccccCCCCceeEEEccc-ceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          129 MLGSFYQRLFPSRGINFIHSSY-SVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~-alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      +.+++.+ +.+++++|++++.. ++||+..                              ..|+..+|+.-.+-|+|||+
T Consensus        98 ~~~d~~~-~~~~~~fD~v~~~~~~l~~~~~------------------------------~~~~~~~l~~~~~~L~pgG~  146 (263)
T 3pfg_A           98 HHGDMRD-FSLGRRFSAVTCMFSSIGHLAG------------------------------QAELDAALERFAAHVLPDGV  146 (263)
T ss_dssp             EECCTTT-CCCSCCEEEEEECTTGGGGSCH------------------------------HHHHHHHHHHHHHTEEEEEE
T ss_pred             EECChHH-CCccCCcCEEEEcCchhhhcCC------------------------------HHHHHHHHHHHHHhcCCCcE
Confidence            3446644 33378999999998 9999643                              13455688888999999999


Q ss_pred             EEEEeccc
Q 043411          208 MFLTFLGR  215 (242)
Q Consensus       208 lvl~~~g~  215 (242)
                      |++.....
T Consensus       147 l~i~~~~~  154 (263)
T 3pfg_A          147 VVVEPWWF  154 (263)
T ss_dssp             EEECCCCC
T ss_pred             EEEEeccC
Confidence            99975433

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.42  E-value=1.5e-07  Score=78.30  Aligned_cols=107  Identities=15%  Similarity=0.211  Sum_probs=65.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+        .    +   +  +++..|+.. +.-...+      ....... .+  +..+
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~--------~----~---~--~v~~vD~s~-~~~~~a~------~~~~~~~-~~--~~~~   90 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLED--------Y----G---F--EVVGVDISE-DMIRKAR------EYAKSRE-SN--VEFI   90 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHH--------T----T---C--EEEEEESCH-HHHHHHH------HHHHHTT-CC--CEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHH--------c----C---C--EEEEEECCH-HHHHHHH------HHHHhcC-CC--ceEE
Confidence            367999999999988765541        1    1   2  666666641 1111111      1111111 11  1234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+--+|++++|++++..++|+...                               .|...+|+.-.+-|+|||+++
T Consensus        91 ~~d~~~~~~~~~~~D~v~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~L~~gG~l~  139 (227)
T 1ve3_A           91 VGDARKLSFEDKTFDYVIFIDSIVHFEP-------------------------------LELNQVFKEVRRVLKPSGKFI  139 (227)
T ss_dssp             ECCTTSCCSCTTCEEEEEEESCGGGCCH-------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             ECchhcCCCCCCcEEEEEEcCchHhCCH-------------------------------HHHHHHHHHHHHHcCCCcEEE
Confidence            4566554467889999999888443111                               234458888888899999999


Q ss_pred             EEecc
Q 043411          210 LTFLG  214 (242)
Q Consensus       210 l~~~g  214 (242)
                      +..+.
T Consensus       140 ~~~~~  144 (227)
T 1ve3_A          140 MYFTD  144 (227)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            98775

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.42  E-value=5.3e-07  Score=81.84  Aligned_cols=112  Identities=18%  Similarity=0.205  Sum_probs=74.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+++..               |..+++.-|+|  +.-...+..      ..... -.--+..+
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~---------------p~~~~~~~D~~--~~~~~a~~~------~~~~~-~~~~v~~~  234 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYN---------------KEVEVTIVDLP--QQLEMMRKQ------TAGLS-GSERIHGH  234 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHS---------------TTCEEEEEECH--HHHHHHHHH------HTTCT-TGGGEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhC---------------CCCEEEEEeCH--HHHHHHHHH------HHhcC-cccceEEE
Confidence            46899999999999888776322               45788888986  333222211      11000 01123456


Q ss_pred             ccccccc--cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          130 LGSFYQR--LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       130 pgSFy~~--l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      .++|++.  -+| ++.|++++.+.+|.+++                               .+...+|+.-.+-|+|||+
T Consensus       235 ~~d~~~~~~~~p-~~~D~v~~~~vlh~~~~-------------------------------~~~~~~l~~~~~~L~pgG~  282 (363)
T 3dp7_A          235 GANLLDRDVPFP-TGFDAVWMSQFLDCFSE-------------------------------EEVISILTRVAQSIGKDSK  282 (363)
T ss_dssp             ECCCCSSSCCCC-CCCSEEEEESCSTTSCH-------------------------------HHHHHHHHHHHHHCCTTCE
T ss_pred             EccccccCCCCC-CCcCEEEEechhhhCCH-------------------------------HHHHHHHHHHHHhcCCCcE
Confidence            7798764  245 89999999999984322                               2344588888899999999


Q ss_pred             EEEEecccCC
Q 043411          208 MFLTFLGRSI  217 (242)
Q Consensus       208 lvl~~~g~~~  217 (242)
                      +++.....+.
T Consensus       283 l~i~e~~~~~  292 (363)
T 3dp7_A          283 VYIMETLWDR  292 (363)
T ss_dssp             EEEEECCTTS
T ss_pred             EEEEeeccCC
Confidence            9998765544

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.42  E-value=4.6e-07  Score=78.70  Aligned_cols=117  Identities=15%  Similarity=0.187  Sum_probs=71.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+..        .         ..+|+-.|+.. +.-...+.... ...... ...++  ..+
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~gvD~s~-~~l~~a~~~~~-~~~~~~-~~~~~--~~~  114 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVE--------E---------GFSVTSVDASD-KMLKYALKERW-NRRKEP-AFDKW--VIE  114 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHH--------T---------TCEEEEEESCH-HHHHHHHHHHH-HTTTSH-HHHTC--EEE
T ss_pred             CCCEEEEecCCCCHHHHHHHH--------C---------CCeEEEEECCH-HHHHHHHHhhh-hccccc-cccee--eEe
Confidence            357999999999998876652        1         13677777752 11111111000 000000 00011  112


Q ss_pred             cccccccc---CCCCceeEEEcc-cceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          130 LGSFYQRL---FPSRGINFIHSS-YSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       130 pgSFy~~l---~p~~svdl~~Ss-~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      .+++..-.   ++++++|+|++. .++|++.+.....                          +++..+|+.-++-|+||
T Consensus       115 ~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~--------------------------~~~~~~l~~~~~~Lkpg  168 (293)
T 3thr_A          115 EANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQ--------------------------SEHRLALKNIASMVRPG  168 (293)
T ss_dssp             ECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSS--------------------------HHHHHHHHHHHHTEEEE
T ss_pred             ecChhhCccccccCCCeEEEEEcChHHhhcCccccCH--------------------------HHHHHHHHHHHHHcCCC
Confidence            33554333   789999999998 8999987644311                          35666899999999999


Q ss_pred             ceEEEEecc
Q 043411          206 GRMFLTFLG  214 (242)
Q Consensus       206 G~lvl~~~g  214 (242)
                      |+|+++...
T Consensus       169 G~l~~~~~~  177 (293)
T 3thr_A          169 GLLVIDHRN  177 (293)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEeCC
Confidence            999998763

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.42  E-value=2.5e-07  Score=80.70  Aligned_cols=47  Identities=15%  Similarity=0.130  Sum_probs=37.5

Q ss_pred             CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEec
Q 043411          138 FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFL  213 (242)
Q Consensus       138 ~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  213 (242)
                      +|++++|+|+|+.++||+..-.                             .|+..+|+.-++-|+|||+|++...
T Consensus       170 ~~~~~fD~V~~~~~l~~~~~~~-----------------------------~~~~~~l~~~~r~LkpGG~l~~~~~  216 (289)
T 2g72_A          170 PAPLPADALVSAFCLEAVSPDL-----------------------------ASFQRALDHITTLLRPGGHLLLIGA  216 (289)
T ss_dssp             SSCSSEEEEEEESCHHHHCSSH-----------------------------HHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cCCCCCCEEEehhhhhhhcCCH-----------------------------HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            5678899999999999965311                             2455588888899999999999754

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.41  E-value=2.2e-06  Score=74.07  Aligned_cols=114  Identities=18%  Similarity=0.138  Sum_probs=69.7

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+        .        +..+++..|+.. +.-...      +........ ..-+..
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~--------~--------~~~~v~gvD~s~-~~~~~a------~~~~~~~~~-~~~v~~  118 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYER--------A--------GIGEYYGVDIAE-VSINDA------RVRARNMKR-RFKVFF  118 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHH--------H--------TCSEEEEEESCH-HHHHHH------HHHHHTSCC-SSEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHH--------C--------CCCEEEEEECCH-HHHHHH------HHHHHhcCC-CccEEE
Confidence            3467999999999998876431        1        123677777642 111111      111111000 011223


Q ss_pred             cccccccccC-CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          129 MLGSFYQRLF-PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       129 vpgSFy~~l~-p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      +.+++.+-.+ +++++|+|++..++||+-.-                             ..|...+|+.-.+-|+|||+
T Consensus       119 ~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~-----------------------------~~~~~~~l~~~~~~LkpgG~  169 (298)
T 1ri5_A          119 RAQDSYGRHMDLGKEFDVISSQFSFHYAFST-----------------------------SESLDIAQRNIARHLRPGGY  169 (298)
T ss_dssp             EESCTTTSCCCCSSCEEEEEEESCGGGGGSS-----------------------------HHHHHHHHHHHHHTEEEEEE
T ss_pred             EECCccccccCCCCCcCEEEECchhhhhcCC-----------------------------HHHHHHHHHHHHHhcCCCCE
Confidence            4446655445 68899999999999985210                             13455588888899999999


Q ss_pred             EEEEeccc
Q 043411          208 MFLTFLGR  215 (242)
Q Consensus       208 lvl~~~g~  215 (242)
                      ++++.+..
T Consensus       170 l~~~~~~~  177 (298)
T 1ri5_A          170 FIMTVPSR  177 (298)
T ss_dssp             EEEEEECH
T ss_pred             EEEEECCH
Confidence            99998754

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.41  E-value=1.9e-06  Score=71.94  Aligned_cols=53  Identities=11%  Similarity=0.202  Sum_probs=39.3

Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      +++..--++++++|++++..++||+.+.                                 ..+|+.-.+-|+|||++++
T Consensus        91 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~---------------------------------~~~l~~~~~~L~pgG~l~i  137 (219)
T 1vlm_A           91 GTAENLPLKDESFDFALMVTTICFVDDP---------------------------------ERALKEAYRILKKGGYLIV  137 (219)
T ss_dssp             CBTTBCCSCTTCEEEEEEESCGGGSSCH---------------------------------HHHHHHHHHHEEEEEEEEE
T ss_pred             cccccCCCCCCCeeEEEEcchHhhccCH---------------------------------HHHHHHHHHHcCCCcEEEE
Confidence            3554434677899999999999996331                                 1267777778899999999


Q ss_pred             EecccC
Q 043411          211 TFLGRS  216 (242)
Q Consensus       211 ~~~g~~  216 (242)
                      +.+.+.
T Consensus       138 ~~~~~~  143 (219)
T 1vlm_A          138 GIVDRE  143 (219)
T ss_dssp             EEECSS
T ss_pred             EEeCCc
Confidence            987653

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.41  E-value=4.9e-07  Score=72.17  Aligned_cols=102  Identities=14%  Similarity=0.187  Sum_probs=65.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+.                - .+++.-|+.. +.-...+          .. .+++-  .+
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~----------------~-~~v~~vD~s~-~~~~~a~----------~~-~~~v~--~~   65 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEF----------------A-TKLYCIDINV-IALKEVK----------EK-FDSVI--TL   65 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTT----------------E-EEEEEECSCH-HHHHHHH----------HH-CTTSE--EE
T ss_pred             CCCeEEEECCCCCHHHHHHHhh----------------c-CeEEEEeCCH-HHHHHHH----------Hh-CCCcE--EE
Confidence            4679999999999998876511                1 2666666641 1111111          00 11211  12


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .++   .-++++++|++++..++||+.+.                                 ..+|+.-.+-|+|||+++
T Consensus        66 ~~d---~~~~~~~~D~v~~~~~l~~~~~~---------------------------------~~~l~~~~~~L~pgG~l~  109 (170)
T 3i9f_A           66 SDP---KEIPDNSVDFILFANSFHDMDDK---------------------------------QHVISEVKRILKDDGRVI  109 (170)
T ss_dssp             SSG---GGSCTTCEEEEEEESCSTTCSCH---------------------------------HHHHHHHHHHEEEEEEEE
T ss_pred             eCC---CCCCCCceEEEEEccchhcccCH---------------------------------HHHHHHHHHhcCCCCEEE
Confidence            223   34678899999999999987431                                 127777778899999999


Q ss_pred             EEecccCCC
Q 043411          210 LTFLGRSIA  218 (242)
Q Consensus       210 l~~~g~~~~  218 (242)
                      +..+.+.+.
T Consensus       110 ~~~~~~~~~  118 (170)
T 3i9f_A          110 IIDWRKENT  118 (170)
T ss_dssp             EEEECSSCC
T ss_pred             EEEcCcccc
Confidence            998877654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.40  E-value=4.1e-07  Score=76.35  Aligned_cols=104  Identities=16%  Similarity=0.192  Sum_probs=66.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+        +    +   . .+++.-|+.. +.-...+.      ..   ...+  +..+
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~--------~----~---~-~~v~~vD~s~-~~~~~a~~------~~---~~~~--~~~~   94 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHE--------H----G---A-SYVLGLDLSE-KMLARARA------AG---PDTG--ITYE   94 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHH--------T----T---C-SEEEEEESCH-HHHHHHHH------TS---CSSS--EEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHH--------C----C---C-CeEEEEcCCH-HHHHHHHH------hc---ccCC--ceEE
Confidence            457999999999998776541        1    1   1 2667667641 11111111      00   0011  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+-.+|++++|++++..++|++.+.                                 ..+|+.-.+-|+|||+++
T Consensus        95 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~~---------------------------------~~~l~~~~~~L~pgG~l~  141 (243)
T 3bkw_A           95 RADLDKLHLPQDSFDLAYSSLALHYVEDV---------------------------------ARLFRTVHQALSPGGHFV  141 (243)
T ss_dssp             ECCGGGCCCCTTCEEEEEEESCGGGCSCH---------------------------------HHHHHHHHHHEEEEEEEE
T ss_pred             EcChhhccCCCCCceEEEEeccccccchH---------------------------------HHHHHHHHHhcCcCcEEE
Confidence            45665555688999999999999986431                                 127777778899999999


Q ss_pred             EEecc
Q 043411          210 LTFLG  214 (242)
Q Consensus       210 l~~~g  214 (242)
                      ++...
T Consensus       142 ~~~~~  146 (243)
T 3bkw_A          142 FSTEH  146 (243)
T ss_dssp             EEEEC
T ss_pred             EEeCC
Confidence            98753

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.40  E-value=2.8e-06  Score=70.99  Aligned_cols=105  Identities=15%  Similarity=0.162  Sum_probs=65.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..               +  +++.-|+.. +.-...+      ...     ++  +..+
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~---------------~--~v~~~D~s~-~~~~~a~------~~~-----~~--~~~~   88 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEF---------------G--DTAGLELSE-DMLTHAR------KRL-----PD--ATLH   88 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHH---------------S--EEEEEESCH-HHHHHHH------HHC-----TT--CEEE
T ss_pred             CCCeEEEecccCCHHHHHHHHhC---------------C--cEEEEeCCH-HHHHHHH------HhC-----CC--CEEE
Confidence            45799999999999987765321               1  455556531 1111111      111     11  1123


Q ss_pred             ccccccccCCCCceeEEEc-ccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          130 LGSFYQRLFPSRGINFIHS-SYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~S-s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      .+++.+ +.+++++|+++| ..++||+...                              .|+..+|+.-.+-|+|||++
T Consensus        89 ~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~------------------------------~~~~~~l~~~~~~L~pgG~l  137 (239)
T 3bxo_A           89 QGDMRD-FRLGRKFSAVVSMFSSVGYLKTT------------------------------EELGAAVASFAEHLEPGGVV  137 (239)
T ss_dssp             ECCTTT-CCCSSCEEEEEECTTGGGGCCSH------------------------------HHHHHHHHHHHHTEEEEEEE
T ss_pred             ECCHHH-cccCCCCcEEEEcCchHhhcCCH------------------------------HHHHHHHHHHHHhcCCCeEE
Confidence            345543 333789999995 4488886431                              24555888888999999999


Q ss_pred             EEEecccC
Q 043411          209 FLTFLGRS  216 (242)
Q Consensus       209 vl~~~g~~  216 (242)
                      ++..+...
T Consensus       138 ~~~~~~~~  145 (239)
T 3bxo_A          138 VVEPWWFP  145 (239)
T ss_dssp             EECCCCCT
T ss_pred             EEEeccCc
Confidence            99876554

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.40  E-value=5.4e-07  Score=77.99  Aligned_cols=47  Identities=13%  Similarity=0.066  Sum_probs=37.3

Q ss_pred             CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411          140 SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR  215 (242)
Q Consensus       140 ~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  215 (242)
                      .+++|+|+|+.++||+..-+                             .|+...|+.-++-|||||+|+++....
T Consensus       154 ~~~fD~V~~~~~l~~i~~~~-----------------------------~~~~~~l~~i~r~LKPGG~li~~~~~~  200 (263)
T 2a14_A          154 LPLADCVLTLLAMECACCSL-----------------------------DAYRAALCNLASLLKPGGHLVTTVTLR  200 (263)
T ss_dssp             CCCEEEEEEESCHHHHCSSH-----------------------------HHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             cCCCCEeeehHHHHHhcCCH-----------------------------HHHHHHHHHHHHHcCCCcEEEEEEeec
Confidence            56999999999999964321                             245568888888999999999997644

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.39  E-value=1.9e-06  Score=71.07  Aligned_cols=105  Identities=13%  Similarity=0.125  Sum_probs=62.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+.                 ..+++.-|+..           ..-...+.. ....+..+-
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~-----------------~~~v~~vD~s~-----------~~~~~a~~~-~~~~~~~~~  102 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADR-----------------GIEAVGVDGDR-----------TLVDAARAA-GAGEVHLAS  102 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTT-----------------TCEEEEEESCH-----------HHHHHHHHT-CSSCEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC-----------------CCEEEEEcCCH-----------HHHHHHHHh-cccccchhh
Confidence            3589999999999888766411                 24677777651           111111111 112232221


Q ss_pred             cccccccc-CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          130 LGSFYQRL-FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       130 pgSFy~~l-~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      ...+-... .+.+++|++++..++| ..+.                                 ..+|+.-.+-|+|||+|
T Consensus       103 ~~~~~~~~~~~~~~fD~v~~~~~l~-~~~~---------------------------------~~~l~~~~~~L~pgG~l  148 (227)
T 3e8s_A          103 YAQLAEAKVPVGKDYDLICANFALL-HQDI---------------------------------IELLSAMRTLLVPGGAL  148 (227)
T ss_dssp             HHHHHTTCSCCCCCEEEEEEESCCC-SSCC---------------------------------HHHHHHHHHTEEEEEEE
T ss_pred             HHhhcccccccCCCccEEEECchhh-hhhH---------------------------------HHHHHHHHHHhCCCeEE
Confidence            11111113 3455699999999999 2111                                 12788888889999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      +++.+.+..
T Consensus       149 ~~~~~~~~~  157 (227)
T 3e8s_A          149 VIQTLHPWS  157 (227)
T ss_dssp             EEEECCTTT
T ss_pred             EEEecCccc
Confidence            999986644

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.39  E-value=5.5e-07  Score=79.27  Aligned_cols=49  Identities=8%  Similarity=0.107  Sum_probs=37.8

Q ss_pred             CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEec
Q 043411          138 FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFL  213 (242)
Q Consensus       138 ~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  213 (242)
                      ++++++|+|++...+||+.-                           .....++..+|+.-.+-|+|||+|++...
T Consensus       173 ~~~~~fD~I~~~~vl~~ihl---------------------------~~~~~~~~~~l~~~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          173 AQTPEYDVVLCLSLTKWVHL---------------------------NWGDEGLKRMFRRIYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             TCCCCEEEEEEESCHHHHHH---------------------------HHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ccCCCcCEEEEChHHHHhhh---------------------------cCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            46889999999999999531                           01124566689999999999999999654

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.36  E-value=1.3e-06  Score=74.94  Aligned_cols=101  Identities=18%  Similarity=0.188  Sum_probs=63.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+        .         ..+++.-|+.           +..-...+... ...++   
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~gvD~s-----------~~~l~~a~~~~-~~~~~---  101 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQE--------R---------GFEVVLVDPS-----------KEMLEVAREKG-VKNVV---  101 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHT--------T---------TCEEEEEESC-----------HHHHHHHHHHT-CSCEE---
T ss_pred             CCCeEEEeCCCcCHHHHHHHH--------c---------CCeEEEEeCC-----------HHHHHHHHhhc-CCCEE---
Confidence            457999999999998876641        1         1466666764           11111111100 11233   


Q ss_pred             ccccccccCCCCceeEEEccc-ceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          130 LGSFYQRLFPSRGINFIHSSY-SVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~-alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      .+++.+--+|++++|++++.. .+||..+ |                                ..+|+.-.+-|+|||++
T Consensus       102 ~~d~~~~~~~~~~fD~v~~~~~~~~~~~~-~--------------------------------~~~l~~~~~~LkpgG~l  148 (260)
T 2avn_A          102 EAKAEDLPFPSGAFEAVLALGDVLSYVEN-K--------------------------------DKAFSEIRRVLVPDGLL  148 (260)
T ss_dssp             ECCTTSCCSCTTCEEEEEECSSHHHHCSC-H--------------------------------HHHHHHHHHHEEEEEEE
T ss_pred             ECcHHHCCCCCCCEEEEEEcchhhhcccc-H--------------------------------HHHHHHHHHHcCCCeEE
Confidence            335544446789999999975 4567433 1                                12777778889999999


Q ss_pred             EEEeccc
Q 043411          209 FLTFLGR  215 (242)
Q Consensus       209 vl~~~g~  215 (242)
                      +++++.+
T Consensus       149 ~~~~~~~  155 (260)
T 2avn_A          149 IATVDNF  155 (260)
T ss_dssp             EEEEEBH
T ss_pred             EEEeCCh
Confidence            9998765

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.34  E-value=8.9e-07  Score=76.84  Aligned_cols=108  Identities=19%  Similarity=0.229  Sum_probs=67.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|.++..+.+.                 ..+|+.-|... ..-...      +.......   .-+..+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~-----------------g~~v~~vD~s~-~~~~~a------~~~~~~~~---~~~~~~  172 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL-----------------GYDVTSWDHNE-NSIAFL------NETKEKEN---LNISTA  172 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT-----------------TCEEEEEESCH-HHHHHH------HHHHHHTT---CCEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHC-----------------CCeEEEEECCH-HHHHHH------HHHHHHcC---CceEEE
Confidence            4579999999999998876521                 14667667642 111111      11111111   122334


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+- .+++++|+|++..++||++.                               .++..+|+.-.+-|+|||+++
T Consensus       173 ~~d~~~~-~~~~~fD~i~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l~  220 (286)
T 3m70_A          173 LYDINAA-NIQENYDFIVSTVVFMFLNR-------------------------------ERVPSIIKNMKEHTNVGGYNL  220 (286)
T ss_dssp             ECCGGGC-CCCSCEEEEEECSSGGGSCG-------------------------------GGHHHHHHHHHHTEEEEEEEE
T ss_pred             Eeccccc-cccCCccEEEEccchhhCCH-------------------------------HHHHHHHHHHHHhcCCCcEEE
Confidence            4566443 33889999999999999743                               123348888888999999988


Q ss_pred             EEecccC
Q 043411          210 LTFLGRS  216 (242)
Q Consensus       210 l~~~g~~  216 (242)
                      +......
T Consensus       221 i~~~~~~  227 (286)
T 3m70_A          221 IVAAMST  227 (286)
T ss_dssp             EEEEBCC
T ss_pred             EEEecCC
Confidence            7665443

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.34  E-value=4.3e-07  Score=79.24  Aligned_cols=108  Identities=11%  Similarity=0.043  Sum_probs=68.1

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      .+..+|+|+|||+|..+..+.+..              +...+|+..|+.. ..-...+      .....   .+.-+..
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~--------------~~~~~v~gvD~s~-~~~~~a~------~~~~~---~~~~v~~   76 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLL--------------PEGSKYTGIDSGE-TLLAEAR------ELFRL---LPYDSEF   76 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTS--------------CTTCEEEEEESCH-HHHHHHH------HHHHS---SSSEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhC--------------CCCCEEEEEECCH-HHHHHHH------HHHHh---cCCceEE
Confidence            457899999999998887665211              1136788888752 1111111      11110   0112223


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +-+++.+ +.+++++|++++..++|++.+.+                                 .+|+.-.+-|+|||++
T Consensus        77 ~~~d~~~-~~~~~~fD~v~~~~~l~~~~~~~---------------------------------~~l~~~~~~LkpgG~l  122 (284)
T 3gu3_A           77 LEGDATE-IELNDKYDIAICHAFLLHMTTPE---------------------------------TMLQKMIHSVKKGGKI  122 (284)
T ss_dssp             EESCTTT-CCCSSCEEEEEEESCGGGCSSHH---------------------------------HHHHHHHHTEEEEEEE
T ss_pred             EEcchhh-cCcCCCeeEEEECChhhcCCCHH---------------------------------HHHHHHHHHcCCCCEE
Confidence            4456654 33467999999999999864322                                 2777777889999999


Q ss_pred             EEEecc
Q 043411          209 FLTFLG  214 (242)
Q Consensus       209 vl~~~g  214 (242)
                      ++..+.
T Consensus       123 ~~~~~~  128 (284)
T 3gu3_A          123 ICFEPH  128 (284)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            998766

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.33  E-value=1.5e-06  Score=70.45  Aligned_cols=106  Identities=17%  Similarity=0.209  Sum_probs=64.7

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..+..+.+.                 ..+++.-|+.. ..-...+      .........+  +..+.
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~-----------------~~~v~~vD~s~-~~~~~a~------~~~~~~~~~~--~~~~~   86 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAAN-----------------GYDVDAWDKNA-MSIANVE------RIKSIENLDN--LHTRV   86 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT-----------------TCEEEEEESCH-HHHHHHH------HHHHHHTCTT--EEEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHHC-----------------CCeEEEEECCH-HHHHHHH------HHHHhCCCCC--cEEEE
Confidence            469999999999988766521                 14666666642 1111111      1111111112  22344


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      +++.+-.+ ++++|++++..++||++.  .                             ++..+|+.-.+-|+|||++++
T Consensus        87 ~d~~~~~~-~~~~D~v~~~~~l~~~~~--~-----------------------------~~~~~l~~~~~~L~~gG~l~~  134 (199)
T 2xvm_A           87 VDLNNLTF-DRQYDFILSTVVLMFLEA--K-----------------------------TIPGLIANMQRCTKPGGYNLI  134 (199)
T ss_dssp             CCGGGCCC-CCCEEEEEEESCGGGSCG--G-----------------------------GHHHHHHHHHHTEEEEEEEEE
T ss_pred             cchhhCCC-CCCceEEEEcchhhhCCH--H-----------------------------HHHHHHHHHHHhcCCCeEEEE
Confidence            46654334 789999999999999642  1                             233478888888999999877


Q ss_pred             Eecc
Q 043411          211 TFLG  214 (242)
Q Consensus       211 ~~~g  214 (242)
                      ....
T Consensus       135 ~~~~  138 (199)
T 2xvm_A          135 VAAM  138 (199)
T ss_dssp             EEEB
T ss_pred             EEee
Confidence            6543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.32  E-value=1.9e-06  Score=74.85  Aligned_cols=129  Identities=9%  Similarity=0.035  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchh
Q 043411           33 WPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDF  112 (242)
Q Consensus        33 ~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~  112 (242)
                      .|.+.+.+..+..  .+...+|+|+|||+|.++..+.+        +         -.+|+--|+.. ..-..++.....
T Consensus        53 ~~~l~~~~~~~~~--~~~~~~vLD~GCG~G~~~~~La~--------~---------G~~V~gvD~S~-~~i~~a~~~~~~  112 (252)
T 2gb4_A           53 HQLLKKHLDTFLK--GQSGLRVFFPLCGKAIEMKWFAD--------R---------GHTVVGVEISE-IGIREFFAEQNL  112 (252)
T ss_dssp             CHHHHHHHHHHHT--TCCSCEEEETTCTTCTHHHHHHH--------T---------TCEEEEECSCH-HHHHHHHHHTTC
T ss_pred             CHHHHHHHHHhcc--CCCCCeEEEeCCCCcHHHHHHHH--------C---------CCeEEEEECCH-HHHHHHHHhccc
Confidence            3445555543321  12457999999999999887752        1         14677667652 111222110000


Q ss_pred             H---Hhhhh--------cCCCCceeeccccccccccCCC-CceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHH
Q 043411          113 Y---ERIKK--------DKFGPCFIAGMLGSFYQRLFPS-RGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVC  180 (242)
Q Consensus       113 ~---~~l~~--------~~~~~~f~~~vpgSFy~~l~p~-~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~  180 (242)
                      .   ..+..        ....+  +..+-+++.+--++. +++|+|++..++|++..  +                    
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~--i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~--~--------------------  168 (252)
T 2gb4_A          113 SYTEEPLAEIAGAKVFKSSSGS--ISLYCCSIFDLPRANIGKFDRIWDRGALVAINP--G--------------------  168 (252)
T ss_dssp             CEEEEECTTSTTCEEEEETTSS--EEEEESCTTTGGGGCCCCEEEEEESSSTTTSCG--G--------------------
T ss_pred             ccccccccccccccccccCCCc--eEEEECccccCCcccCCCEEEEEEhhhhhhCCH--H--------------------
Confidence            0   00000        00011  122345775544443 89999999999999731  1                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCceEEEEecc
Q 043411          181 QAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       181 ~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                               +...+++.-++-|+|||+|++.++.
T Consensus       169 ---------~~~~~l~~~~~~LkpGG~l~l~~~~  193 (252)
T 2gb4_A          169 ---------DHDRYADIILSLLRKEFQYLVAVLS  193 (252)
T ss_dssp             ---------GHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             ---------HHHHHHHHHHHHcCCCeEEEEEEEe
Confidence                     1223777778889999999765543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.32  E-value=2.1e-06  Score=76.05  Aligned_cols=113  Identities=12%  Similarity=0.136  Sum_probs=72.7

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+..               |..+++.-|++  +.-...+.... ...+.    .  -+..
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~---------------p~~~~~~~D~~--~~~~~a~~~~~-~~~~~----~--~v~~  219 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHN---------------PNAEIFGVDWA--SVLEVAKENAR-IQGVA----S--RYHT  219 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHC---------------TTCEEEEEECH--HHHHHHHHHHH-HHTCG----G--GEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHC---------------CCCeEEEEecH--HHHHHHHHHHH-hcCCC----c--ceEE
Confidence            346899999999998877665221               34688888886  44333332110 00010    0  1234


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+.-+|. .+|++++...+|.+++                               .+...+|+.-.+-|+|||++
T Consensus       220 ~~~d~~~~~~~~-~~D~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~L~pgG~l  267 (335)
T 2r3s_A          220 IAGSAFEVDYGN-DYDLVLLPNFLHHFDV-------------------------------ATCEQLLRKIKTALAVEGKV  267 (335)
T ss_dssp             EESCTTTSCCCS-CEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             EecccccCCCCC-CCcEEEEcchhccCCH-------------------------------HHHHHHHHHHHHhCCCCcEE
Confidence            566876544444 4999999999986422                               23445888888889999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++..+..++
T Consensus       268 ~i~e~~~~~  276 (335)
T 2r3s_A          268 IVFDFIPNS  276 (335)
T ss_dssp             EEEECCCCT
T ss_pred             EEEeecCCC
Confidence            998877654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.31  E-value=3e-06  Score=76.26  Aligned_cols=103  Identities=15%  Similarity=0.294  Sum_probs=70.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..               |..+++.-|+|  +.-...+..            ++  +..+
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~---------------p~~~~~~~D~~--~~~~~a~~~------------~~--v~~~  236 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETF---------------PKLKCIVFDRP--QVVENLSGS------------NN--LTYV  236 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC---------------TTCEEEEEECH--HHHTTCCCB------------TT--EEEE
T ss_pred             cCceEEEeCCCccHHHHHHHHHC---------------CCCeEEEeeCH--HHHhhcccC------------CC--cEEE
Confidence            46899999999998877665221               34678888885  222211111            12  3456


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc---Cc
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVS---GG  206 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~p---GG  206 (242)
                      .++|++ -+|.  .|++++..++|.+++                               .+...+|+.-.+-|+|   ||
T Consensus       237 ~~d~~~-~~p~--~D~v~~~~~lh~~~d-------------------------------~~~~~~l~~~~~~L~p~~~gG  282 (352)
T 1fp2_A          237 GGDMFT-SIPN--ADAVLLKYILHNWTD-------------------------------KDCLRILKKCKEAVTNDGKRG  282 (352)
T ss_dssp             ECCTTT-CCCC--CSEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHHSGGGCCC
T ss_pred             eccccC-CCCC--ccEEEeehhhccCCH-------------------------------HHHHHHHHHHHHhCCCCCCCc
Confidence            778877 4453  999999999995332                               1233478888888999   99


Q ss_pred             eEEEEecccCC
Q 043411          207 RMFLTFLGRSI  217 (242)
Q Consensus       207 ~lvl~~~g~~~  217 (242)
                      ++++..+..++
T Consensus       283 ~l~i~e~~~~~  293 (352)
T 1fp2_A          283 KVTIIDMVIDK  293 (352)
T ss_dssp             EEEEEECEECT
T ss_pred             EEEEEEeecCC
Confidence            99999876654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.30  E-value=4.2e-06  Score=72.44  Aligned_cols=109  Identities=17%  Similarity=0.263  Sum_probs=67.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcC-CCCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDK-FGPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~-~~~~f~~~  128 (242)
                      ...+|+|+|||+|..+..+.+..               + .+|+--|+.. +.-...      +....... ..+  +..
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~---------------~-~~v~gvd~s~-~~~~~a------~~~~~~~~~~~~--~~~  118 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKY---------------D-VNVVGLTLSK-NQANHV------QQLVANSENLRS--KRV  118 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH---------------C-CEEEEEESCH-HHHHHH------HHHHHTCCCCSC--EEE
T ss_pred             CcCEEEEECCcccHHHHHHHHHc---------------C-CEEEEEECCH-HHHHHH------HHHHHhcCCCCC--eEE
Confidence            45799999999999888765322               1 3666667642 111111      11111100 011  122


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++ .. +| +++|+++|..++|++..                               .|+..+|+.-.+-|+|||++
T Consensus       119 ~~~d~-~~-~~-~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l  164 (287)
T 1kpg_A          119 LLAGW-EQ-FD-EPVDRIVSIGAFEHFGH-------------------------------ERYDAFFSLAHRLLPADGVM  164 (287)
T ss_dssp             EESCG-GG-CC-CCCSEEEEESCGGGTCT-------------------------------TTHHHHHHHHHHHSCTTCEE
T ss_pred             EECCh-hh-CC-CCeeEEEEeCchhhcCh-------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence            34455 23 34 89999999999998642                               12333787888889999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++..+....
T Consensus       165 ~~~~~~~~~  173 (287)
T 1kpg_A          165 LLHTITGLH  173 (287)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEecCCC
Confidence            999987654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.30  E-value=7.3e-07  Score=73.75  Aligned_cols=100  Identities=17%  Similarity=0.137  Sum_probs=65.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+               . + .+++.-|+..           ........ .. .-+   +
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~---------------~-~-~~~~~~D~~~-----------~~~~~~~~-~~-~~~---~   78 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKE---------------N-G-TRVSGIEAFP-----------EAAEQAKE-KL-DHV---V   78 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHT---------------T-T-CEEEEEESSH-----------HHHHHHHT-TS-SEE---E
T ss_pred             CCCcEEEeCCCCCHHHHHHHh---------------c-C-CeEEEEeCCH-----------HHHHHHHH-hC-CcE---E
Confidence            468999999999998876641               1 2 5666667641           11111110 00 112   3


Q ss_pred             cccccc--ccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          130 LGSFYQ--RLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       130 pgSFy~--~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      .+++..  .-++++++|++++..++|++.+..                                 .+|+.-.+-|+|||+
T Consensus        79 ~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~~---------------------------------~~l~~~~~~L~~gG~  125 (230)
T 3cc8_A           79 LGDIETMDMPYEEEQFDCVIFGDVLEHLFDPW---------------------------------AVIEKVKPYIKQNGV  125 (230)
T ss_dssp             ESCTTTCCCCSCTTCEEEEEEESCGGGSSCHH---------------------------------HHHHHTGGGEEEEEE
T ss_pred             EcchhhcCCCCCCCccCEEEECChhhhcCCHH---------------------------------HHHHHHHHHcCCCCE
Confidence            335433  345778999999999999864321                                 278888899999999


Q ss_pred             EEEEeccc
Q 043411          208 MFLTFLGR  215 (242)
Q Consensus       208 lvl~~~g~  215 (242)
                      ++++....
T Consensus       126 l~~~~~~~  133 (230)
T 3cc8_A          126 ILASIPNV  133 (230)
T ss_dssp             EEEEEECT
T ss_pred             EEEEeCCc
Confidence            99998653

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.30  E-value=5.6e-06  Score=70.05  Aligned_cols=122  Identities=20%  Similarity=0.304  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCc
Q 043411           31 KAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLP  110 (242)
Q Consensus        31 ~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~  110 (242)
                      ....++++.+....   .+...+|+|+|||+|..+..+.+        .         ..+++.-|+.. +.-...+   
T Consensus        25 ~~~~~~~~~~~~~~---~~~~~~vLDlGcG~G~~~~~l~~--------~---------~~~v~gvD~s~-~~l~~a~---   80 (252)
T 1wzn_A           25 AEIDFVEEIFKEDA---KREVRRVLDLACGTGIPTLELAE--------R---------GYEVVGLDLHE-EMLRVAR---   80 (252)
T ss_dssp             HHHHHHHHHHHHTC---SSCCCEEEEETCTTCHHHHHHHH--------T---------TCEEEEEESCH-HHHHHHH---
T ss_pred             HHHHHHHHHHHHhc---ccCCCEEEEeCCCCCHHHHHHHH--------C---------CCeEEEEECCH-HHHHHHH---
Confidence            34455555554332   13457999999999998886651        1         14677777642 1111111   


Q ss_pred             hhHHhhhhcCCCCceeeccccccccccCCCCceeEEEccc-ceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHH
Q 043411          111 DFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSY-SVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQR  189 (242)
Q Consensus       111 ~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~-alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~  189 (242)
                         ........ +  +..+.+++.+ +.+++++|++++.. ++++++   .                            .
T Consensus        81 ---~~~~~~~~-~--v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~---~----------------------------~  122 (252)
T 1wzn_A           81 ---RKAKERNL-K--IEFLQGDVLE-IAFKNEFDAVTMFFSTIMYFD---E----------------------------E  122 (252)
T ss_dssp             ---HHHHHTTC-C--CEEEESCGGG-CCCCSCEEEEEECSSGGGGSC---H----------------------------H
T ss_pred             ---HHHHhcCC-c--eEEEECChhh-cccCCCccEEEEcCCchhcCC---H----------------------------H
Confidence               11111111 1  2234446644 33457899999863 344431   1                            2


Q ss_pred             HHHHHHHHHHhhhccCceEEEEecc
Q 043411          190 DFSAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       190 D~~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                      |...+|+.-.+-|+|||++++.+..
T Consensus       123 ~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          123 DLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCeEEEEeccc
Confidence            4556888888899999999987653

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.29  E-value=3.9e-06  Score=66.94  Aligned_cols=103  Identities=11%  Similarity=0.095  Sum_probs=64.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCC-Cceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFG-PCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~-~~f~~~  128 (242)
                      ...+|+|+|||+|..++.+...               .|..+++..|+.. +.-...      +......... ++++. 
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~---------------~~~~~v~~vD~~~-~~~~~a------~~~~~~~~~~~~~~~~-   81 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRS---------------TPQTTAVCFEISE-ERRERI------LSNAINLGVSDRIAVQ-   81 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTT---------------SSSEEEEEECSCH-HHHHHH------HHHHHTTTCTTSEEEE-
T ss_pred             CCCeEEEeCCCCCHHHHHHHHH---------------CCCCeEEEEeCCH-HHHHHH------HHHHHHhCCCCCEEEe-
Confidence            4579999999999988876521               1357888888752 111111      1111111112 34333 


Q ss_pred             cccccccccCCC--CceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          129 MLGSFYQRLFPS--RGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       129 vpgSFy~~l~p~--~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                        ++..+ .+|.  +++|++++..++||    +.                                 +|+.-.+-|+|||
T Consensus        82 --~d~~~-~~~~~~~~~D~i~~~~~~~~----~~---------------------------------~l~~~~~~L~~gG  121 (178)
T 3hm2_A           82 --QGAPR-AFDDVPDNPDVIFIGGGLTA----PG---------------------------------VFAAAWKRLPVGG  121 (178)
T ss_dssp             --CCTTG-GGGGCCSCCSEEEECC-TTC----TT---------------------------------HHHHHHHTCCTTC
T ss_pred             --cchHh-hhhccCCCCCEEEECCcccH----HH---------------------------------HHHHHHHhcCCCC
Confidence              34433 3444  89999999888887    22                                 6777778899999


Q ss_pred             eEEEEeccc
Q 043411          207 RMFLTFLGR  215 (242)
Q Consensus       207 ~lvl~~~g~  215 (242)
                      ++++..+..
T Consensus       122 ~l~~~~~~~  130 (178)
T 3hm2_A          122 RLVANAVTV  130 (178)
T ss_dssp             EEEEEECSH
T ss_pred             EEEEEeecc
Confidence            999987754

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.29  E-value=3.3e-07  Score=84.24  Aligned_cols=104  Identities=10%  Similarity=0.012  Sum_probs=63.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+        +         -.+++--|+.. +.-...+..     .+.  .....|..+ 
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~--------~---------g~~v~gvD~s~-~~~~~a~~~-----~~~--~~~~~~~~~-  160 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQE--------A---------GVRHLGFEPSS-GVAAKAREK-----GIR--VRTDFFEKA-  160 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHH--------T---------TCEEEEECCCH-HHHHHHHTT-----TCC--EECSCCSHH-
T ss_pred             CCCEEEEecCCCCHHHHHHHH--------c---------CCcEEEECCCH-HHHHHHHHc-----CCC--cceeeechh-
Confidence            467999999999998776641        1         14677777752 111111110     000  000011111 


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                        ..-.--++++++|+|++..++||+.+.                                 ..||+.-++-|+|||+|+
T Consensus       161 --~~~~l~~~~~~fD~I~~~~vl~h~~d~---------------------------------~~~l~~~~r~LkpgG~l~  205 (416)
T 4e2x_A          161 --TADDVRRTEGPANVIYAANTLCHIPYV---------------------------------QSVLEGVDALLAPDGVFV  205 (416)
T ss_dssp             --HHHHHHHHHCCEEEEEEESCGGGCTTH---------------------------------HHHHHHHHHHEEEEEEEE
T ss_pred             --hHhhcccCCCCEEEEEECChHHhcCCH---------------------------------HHHHHHHHHHcCCCeEEE
Confidence              111112467899999999999997432                                 227888888899999999


Q ss_pred             EEecc
Q 043411          210 LTFLG  214 (242)
Q Consensus       210 l~~~g  214 (242)
                      +....
T Consensus       206 i~~~~  210 (416)
T 4e2x_A          206 FEDPY  210 (416)
T ss_dssp             EEEEC
T ss_pred             EEeCC
Confidence            98764

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.29  E-value=3.5e-06  Score=76.37  Aligned_cols=112  Identities=16%  Similarity=0.137  Sum_probs=74.9

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +..-+|+|+|||+|..++.+++        +       .|..+++.-|+|  +--...+..      ....  ..--+..
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~--------~-------~p~~~~~~~dlp--~v~~~a~~~------~~~~--~~~rv~~  232 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMS--------L-------YPGCKITVFDIP--EVVWTAKQH------FSFQ--EEEQIDF  232 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHH--------H-------CSSCEEEEEECH--HHHHHHHHH------SCC----CCSEEE
T ss_pred             ccCCeEEeeCCCCCHHHHHHHH--------h-------CCCceeEeccCH--HHHHHHHHh------hhhc--ccCceee
Confidence            3457999999999988776662        2       156788888998  332222211      1000  1123456


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      ++|+|++..+|  ..|+++..+.||-.   |.                            .+...+|+.-++-|+|||++
T Consensus       233 ~~gD~~~~~~~--~~D~~~~~~vlh~~---~d----------------------------~~~~~iL~~~~~al~pgg~l  279 (353)
T 4a6d_A          233 QEGDFFKDPLP--EADLYILARVLHDW---AD----------------------------GKCSHLLERIYHTCKPGGGI  279 (353)
T ss_dssp             EESCTTTSCCC--CCSEEEEESSGGGS---CH----------------------------HHHHHHHHHHHHHCCTTCEE
T ss_pred             ecCccccCCCC--CceEEEeeeecccC---CH----------------------------HHHHHHHHHHHhhCCCCCEE
Confidence            78899976444  46999999999932   22                            23345899999999999999


Q ss_pred             EEEecccCCC
Q 043411          209 FLTFLGRSIA  218 (242)
Q Consensus       209 vl~~~g~~~~  218 (242)
                      ++.-.-.++.
T Consensus       280 li~e~~~~~~  289 (353)
T 4a6d_A          280 LVIESLLDED  289 (353)
T ss_dssp             EEEECCCCTT
T ss_pred             EEEEeeeCCC
Confidence            9987765543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.29  E-value=2.5e-06  Score=69.85  Aligned_cols=56  Identities=13%  Similarity=0.121  Sum_probs=36.1

Q ss_pred             CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411          138 FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR  215 (242)
Q Consensus       138 ~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  215 (242)
                      ++++++|+++|..++||...-                    ..+.+  ...+....+|+.-.+-|+|||+|++..+..
T Consensus       102 ~~~~~fD~v~~~~~~~~~g~~--------------------~~d~~--~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (201)
T 2plw_A          102 LQDKKIDIILSDAAVPCIGNK--------------------IDDHL--NSCELTLSITHFMEQYINIGGTYIVKMYLG  157 (201)
T ss_dssp             HTTCCEEEEEECCCCCCCSCH--------------------HHHHH--HHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cCCCcccEEEeCCCcCCCCCc--------------------ccCHH--HHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence            577899999999988883210                    00000  111223446766677889999999977653

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.28  E-value=4.8e-06  Score=74.99  Aligned_cols=112  Identities=13%  Similarity=0.202  Sum_probs=73.1

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+..               |..+++.-|+|  +.-...+..      +......+ -+..
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~---------------p~~~~~~~D~~--~~~~~a~~~------~~~~~~~~-~v~~  244 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHF---------------PELDSTILNLP--GAIDLVNEN------AAEKGVAD-RMRG  244 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHC---------------TTCEEEEEECG--GGHHHHHHH------HHHTTCTT-TEEE
T ss_pred             CCCCEEEEECCcccHHHHHHHHHC---------------CCCeEEEEecH--HHHHHHHHH------HHhcCCCC-CEEE
Confidence            356899999999999888776321               35778888985  443333211      11111111 1334


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.++|.+..+|+.  |++++...+|.+++                               .+...+|+.-.+-|+|||++
T Consensus       245 ~~~d~~~~~~~~~--D~v~~~~vlh~~~d-------------------------------~~~~~~l~~~~~~L~pgG~l  291 (359)
T 1x19_A          245 IAVDIYKESYPEA--DAVLFCRILYSANE-------------------------------QLSTIMCKKAFDAMRSGGRL  291 (359)
T ss_dssp             EECCTTTSCCCCC--SEEEEESCGGGSCH-------------------------------HHHHHHHHHHHTTCCTTCEE
T ss_pred             EeCccccCCCCCC--CEEEEechhccCCH-------------------------------HHHHHHHHHHHHhcCCCCEE
Confidence            6678876655554  99999999984321                               23455888889999999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++..+..++
T Consensus       292 ~i~e~~~~~  300 (359)
T 1x19_A          292 LILDMVIDD  300 (359)
T ss_dssp             EEEEECCCC
T ss_pred             EEEecccCC
Confidence            888766543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.27  E-value=3.5e-06  Score=67.65  Aligned_cols=105  Identities=15%  Similarity=0.195  Sum_probs=65.3

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+.                 ..+++.-|... +.-...+      ...     .+  +..
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~-----------------~~~v~~~D~~~-~~~~~a~------~~~-----~~--~~~   93 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ-----------------GHDVLGTDLDP-ILIDYAK------QDF-----PE--ARW   93 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT-----------------TCEEEEEESCH-HHHHHHH------HHC-----TT--SEE
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC-----------------CCcEEEEcCCH-HHHHHHH------HhC-----CC--CcE
Confidence            34679999999999988766521                 13566666541 1111110      000     11  112


Q ss_pred             cccccccccCCCCceeEEEcc-cceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          129 MLGSFYQRLFPSRGINFIHSS-YSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss-~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      +.+++.+--+|++++|++++. ..+|+++.                               .+...+|+.-.+-|+|||+
T Consensus        94 ~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~l~~~G~  142 (195)
T 3cgg_A           94 VVGDLSVDQISETDFDLIVSAGNVMGFLAE-------------------------------DGREPALANIHRALGADGR  142 (195)
T ss_dssp             EECCTTTSCCCCCCEEEEEECCCCGGGSCH-------------------------------HHHHHHHHHHHHHEEEEEE
T ss_pred             EEcccccCCCCCCceeEEEECCcHHhhcCh-------------------------------HHHHHHHHHHHHHhCCCCE
Confidence            344665544678899999997 66776421                               2344578888888999999


Q ss_pred             EEEEeccc
Q 043411          208 MFLTFLGR  215 (242)
Q Consensus       208 lvl~~~g~  215 (242)
                      +++.....
T Consensus       143 l~~~~~~~  150 (195)
T 3cgg_A          143 AVIGFGAG  150 (195)
T ss_dssp             EEEEEETT
T ss_pred             EEEEeCCC
Confidence            99987654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.25  E-value=9.9e-06  Score=69.40  Aligned_cols=114  Identities=7%  Similarity=0.056  Sum_probs=66.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCc-----hHHHhhcCchhHHhhhhcCC-CC
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGND-----FNSIFESLPDFYERIKKDKF-GP  123 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~ND-----Fn~lf~~l~~~~~~l~~~~~-~~  123 (242)
                      ...+|+|+|||+|..+..+.+..           +   |..+++--|+....     .-...+.      .+..... .+
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~-----------g---~~~~v~gvD~s~~~~~~~~~~~~a~~------~~~~~~~~~~  102 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQV-----------G---SSGHVTGIDIASPDYGAPLTLGQAWN------HLLAGPLGDR  102 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-----------C---TTCEEEEECSSCTTCCSSSCHHHHHH------HHHTSTTGGG
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh-----------C---CCCEEEEEECCccccccHHHHHHHHH------HHHhcCCCCc
Confidence            45799999999999988765322           1   23678888886431     2222211      1110000 11


Q ss_pred             ceeeccccc-cc--cccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 043411          124 CFIAGMLGS-FY--QRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSE  200 (242)
Q Consensus       124 ~f~~~vpgS-Fy--~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~  200 (242)
                        +..+.++ +.  ..-++++++|+++|..++|++.+.+.                                 +++....
T Consensus       103 --v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~---------------------------------~~~~~~~  147 (275)
T 3bkx_A          103 --LTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANA---------------------------------LALLFKN  147 (275)
T ss_dssp             --EEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHH---------------------------------HHHHHHH
T ss_pred             --eEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHH---------------------------------HHHHHHH
Confidence              1223344 43  22346789999999999998644211                                 4444444


Q ss_pred             hhccCceEEEEecccCCC
Q 043411          201 EIVSGGRMFLTFLGRSIA  218 (242)
Q Consensus       201 EL~pGG~lvl~~~g~~~~  218 (242)
                      =++|||++++..+.....
T Consensus       148 l~~~gG~l~~~~~~~~~~  165 (275)
T 3bkx_A          148 MAAVCDHVDVAEWSMQPT  165 (275)
T ss_dssp             HTTTCSEEEEEEECSSCS
T ss_pred             HhCCCCEEEEEEecCCCC
Confidence            445699999998876543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.25  E-value=3e-06  Score=74.53  Aligned_cols=100  Identities=8%  Similarity=-0.018  Sum_probs=60.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..|+.+.+        +         -.+|+--|+.           +..-...+..-...    .+
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~--------~---------g~~V~gvD~S-----------~~ml~~Ar~~~~~~----~v   92 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALE--------R---------GASVTVFDFS-----------QRMCDDLAEALADR----CV   92 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHH--------T---------TCEEEEEESC-----------HHHHHHHHHHTSSS----CC
T ss_pred             CcCEEEEEeCcchHHHHHHHh--------c---------CCEEEEEECC-----------HHHHHHHHHHHHhc----cc
Confidence            457999999999999887752        1         1456666664           21111111100011    12


Q ss_pred             cccccccc-----CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043411          130 LGSFYQRL-----FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVS  204 (242)
Q Consensus       130 pgSFy~~l-----~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~p  204 (242)
                      .+++..--     .+++++|+++|..++||+..                               .+...+|+.-++-| |
T Consensus        93 ~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~-------------------------------~~~~~~l~~l~~lL-P  140 (261)
T 3iv6_A           93 TIDLLDITAEIPKELAGHFDFVLNDRLINRFTT-------------------------------EEARRACLGMLSLV-G  140 (261)
T ss_dssp             EEEECCTTSCCCGGGTTCCSEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHH-T
T ss_pred             eeeeeecccccccccCCCccEEEEhhhhHhCCH-------------------------------HHHHHHHHHHHHhC-c
Confidence            33442211     12678999999999998532                               23444666666778 9


Q ss_pred             CceEEEEec
Q 043411          205 GGRMFLTFL  213 (242)
Q Consensus       205 GG~lvl~~~  213 (242)
                      ||+|++++.
T Consensus       141 GG~l~lS~~  149 (261)
T 3iv6_A          141 SGTVRASVK  149 (261)
T ss_dssp             TSEEEEEEE
T ss_pred             CcEEEEEec
Confidence            999999875

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.25  E-value=1.2e-05  Score=71.40  Aligned_cols=108  Identities=17%  Similarity=0.113  Sum_probs=72.0

Q ss_pred             cEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceeeccc
Q 043411           52 FNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        52 ~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .+|+|+|||+|..+..+.+..               |..+++.-|+|  +.-...+. +..  ..+.    .+  +..+.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~---------------p~~~~~~~D~~--~~~~~a~~~~~~--~~~~----~~--v~~~~  223 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAE---------------PSARGVMLDRE--GSLGVARDNLSS--LLAG----ER--VSLVG  223 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHC---------------TTCEEEEEECT--TCTHHHHHHTHH--HHHT----TS--EEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHC---------------CCCEEEEeCcH--HHHHHHHHHHhh--cCCC----Cc--EEEec
Confidence            899999999998877665221               35788999995  33333322 111  0110    11  23466


Q ss_pred             cccccccCCCCceeEEEccccee-ecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVH-WLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alh-WLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      ++|.+. +| +++|++++...+| |    |.                            .+...+|+.-.+-|+|||+|+
T Consensus       224 ~d~~~~-~~-~~~D~v~~~~vl~~~----~~----------------------------~~~~~~l~~~~~~L~pgG~l~  269 (334)
T 2ip2_A          224 GDMLQE-VP-SNGDIYLLSRIIGDL----DE----------------------------AASLRLLGNCREAMAGDGRVV  269 (334)
T ss_dssp             SCTTTC-CC-SSCSEEEEESCGGGC----CH----------------------------HHHHHHHHHHHHHSCTTCEEE
T ss_pred             CCCCCC-CC-CCCCEEEEchhccCC----CH----------------------------HHHHHHHHHHHHhcCCCCEEE
Confidence            788773 45 7899999999997 6    11                            123447888888899999999


Q ss_pred             EEecccCCC
Q 043411          210 LTFLGRSIA  218 (242)
Q Consensus       210 l~~~g~~~~  218 (242)
                      +.....++.
T Consensus       270 i~e~~~~~~  278 (334)
T 2ip2_A          270 VIERTISAS  278 (334)
T ss_dssp             EEECCBCSS
T ss_pred             EEEeccCCC
Confidence            998766543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.24  E-value=1.3e-06  Score=71.52  Aligned_cols=123  Identities=14%  Similarity=0.035  Sum_probs=71.1

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..+..+.+.            +   + -+++.-|+.     .-.-...  +....  ...++  ..
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~------------~---~-~~v~~~D~s-----~~~~~~a--~~~~~--~~~~i--~~   93 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLG------------G---F-PNVTSVDYS-----SVVVAAM--QACYA--HVPQL--RW   93 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHT------------T---C-CCEEEEESC-----HHHHHHH--HHHTT--TCTTC--EE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHc------------C---C-CcEEEEeCC-----HHHHHHH--HHhcc--cCCCc--EE
Confidence            34579999999999998866521            1   1 155666654     1111000  11110  00111  12


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+--++++++|+|++..++|.+.......       |.    .       ......+...+|+.-.+-|+|||++
T Consensus        94 ~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~-------~~----~-------~~~~~~~~~~~l~~~~~~LkpgG~l  155 (215)
T 2pxx_A           94 ETMDVRKLDFPSASFDVVLEKGTLDALLAGERDP-------WT----V-------SSEGVHTVDQVLSEVSRVLVPGGRF  155 (215)
T ss_dssp             EECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCT-------TS----C-------CHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred             EEcchhcCCCCCCcccEEEECcchhhhccccccc-------cc----c-------ccchhHHHHHHHHHHHHhCcCCCEE
Confidence            3345544346788999999998887754221100       00    0       0112346677888888899999999


Q ss_pred             EEEecccC
Q 043411          209 FLTFLGRS  216 (242)
Q Consensus       209 vl~~~g~~  216 (242)
                      ++..++..
T Consensus       156 i~~~~~~~  163 (215)
T 2pxx_A          156 ISMTSAAP  163 (215)
T ss_dssp             EEEESCCH
T ss_pred             EEEeCCCc
Confidence            99998764

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.24  E-value=1.5e-06  Score=73.66  Aligned_cols=138  Identities=13%  Similarity=0.251  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHH-------HhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEec
Q 043411           23 NIQRTVMSKAWPFLEETI-------KDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLN   95 (242)
Q Consensus        23 ~~Q~~~~~~~~~~l~~ai-------~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~n   95 (242)
                      ..|++.++...|.+.-..       .++.   .....+|+|+|||+|..++.+.+..               |...|+--
T Consensus         3 ~~q~~~~~~~~~~~~~~~~~~~~d~~~~f---~~~~~~vLDiGcG~G~~~~~lA~~~---------------p~~~v~gi   64 (218)
T 3dxy_A            3 SGQEHALENYWPVMGVEFSEDMLDFPALF---GREAPVTLEIGFGMGASLVAMAKDR---------------PEQDFLGI   64 (218)
T ss_dssp             ----CHHHHHHHHHBCCCCSSCCCHHHHH---SSCCCEEEEESCTTCHHHHHHHHHC---------------TTSEEEEE
T ss_pred             HHHHHHHHHHhHHhCCCCCCCCCCHHHHc---CCCCCeEEEEeeeChHHHHHHHHHC---------------CCCeEEEE
Confidence            457777777777553110       0111   1245799999999999988775221               45677777


Q ss_pred             CCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccc---cccCCCCceeEEEcccceeecccCCCcccCCCCceEEc
Q 043411           96 DLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFY---QRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYIT  172 (242)
Q Consensus        96 DLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy---~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~  172 (242)
                      |+..+=...       ...........++-  .+.++..   ...+|++++|.+++.+...|-...-.     +.++.  
T Consensus        65 D~s~~~l~~-------a~~~~~~~~l~nv~--~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~-----~rr~~--  128 (218)
T 3dxy_A           65 EVHSPGVGA-------CLASAHEEGLSNLR--VMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHN-----KRRIV--  128 (218)
T ss_dssp             CSCHHHHHH-------HHHHHHHTTCSSEE--EECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGG-----GGSSC--
T ss_pred             EecHHHHHH-------HHHHHHHhCCCcEE--EEECCHHHHHHHHcCCCChheEEEeCCCCccchhhh-----hhhhh--
Confidence            775211100       11111111222322  2344543   33589999999999988888332111     11110  


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEe
Q 043411          173 KSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTF  212 (242)
Q Consensus       173 ~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~  212 (242)
                         .               ..||+.-++-|+|||++++.+
T Consensus       129 ---~---------------~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          129 ---Q---------------VPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             ---S---------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---h---------------HHHHHHHHHHcCCCcEEEEEe
Confidence               0               127777788899999999976

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.23  E-value=5.7e-06  Score=64.96  Aligned_cols=111  Identities=17%  Similarity=0.255  Sum_probs=68.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..           +   +..+++..|+..  ..    .++           +-.+   +
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~-----------~---~~~~v~~~D~~~--~~----~~~-----------~~~~---~   67 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQI-----------G---GKGRIIACDLLP--MD----PIV-----------GVDF---L   67 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHH-----------C---TTCEEEEEESSC--CC----CCT-----------TEEE---E
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHh-----------C---CCCeEEEEECcc--cc----ccC-----------cEEE---E
Confidence            45699999999999888776332           1   235677777652  11    111           0111   2


Q ss_pred             cccccccc--------CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 043411          130 LGSFYQRL--------FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEE  201 (242)
Q Consensus       130 pgSFy~~l--------~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~E  201 (242)
                      .+++.+--        ++++++|++++...+||.......                      ..........+|+.-.+-
T Consensus        68 ~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~  125 (180)
T 1ej0_A           68 QGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVD----------------------IPRAMYLVELALEMCRDV  125 (180)
T ss_dssp             ESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHH----------------------HHHHHHHHHHHHHHHHHH
T ss_pred             EcccccchhhhhhhccCCCCceeEEEECCCccccCCCccc----------------------hHHHHHHHHHHHHHHHHH
Confidence            33443322        678899999999999985442110                      001112235677777888


Q ss_pred             hccCceEEEEecccC
Q 043411          202 IVSGGRMFLTFLGRS  216 (242)
Q Consensus       202 L~pGG~lvl~~~g~~  216 (242)
                      |+|||+++++.+...
T Consensus       126 L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A          126 LAPGGSFVVKVFQGE  140 (180)
T ss_dssp             EEEEEEEEEEEESST
T ss_pred             cCCCcEEEEEEecCC
Confidence            999999999887543

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.23  E-value=2.1e-06  Score=77.48  Aligned_cols=103  Identities=16%  Similarity=0.232  Sum_probs=70.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..               |..+++.-|+|  ..-...+.+            .+  +..+
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~---------------p~~~~~~~D~~--~~~~~a~~~------------~~--v~~~  241 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIF---------------PHLKCTVFDQP--QVVGNLTGN------------EN--LNFV  241 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC---------------TTSEEEEEECH--HHHSSCCCC------------SS--EEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHC---------------CCCeEEEeccH--HHHhhcccC------------CC--cEEE
Confidence            35799999999999888776222               34667777875  322211111            12  4456


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc---Cc
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVS---GG  206 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~p---GG  206 (242)
                      .++|++ -+|  +.|++++.+.+|++++                               .+...+|+.-.+-|+|   ||
T Consensus       242 ~~d~~~-~~~--~~D~v~~~~vlh~~~d-------------------------------~~~~~~l~~~~~~L~p~~~gG  287 (358)
T 1zg3_A          242 GGDMFK-SIP--SADAVLLKWVLHDWND-------------------------------EQSLKILKNSKEAISHKGKDG  287 (358)
T ss_dssp             ECCTTT-CCC--CCSEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHTGGGGGGC
T ss_pred             eCccCC-CCC--CceEEEEcccccCCCH-------------------------------HHHHHHHHHHHHhCCCCCCCc
Confidence            779887 455  4999999999997543                               1233488888889999   99


Q ss_pred             eEEEEecccCC
Q 043411          207 RMFLTFLGRSI  217 (242)
Q Consensus       207 ~lvl~~~g~~~  217 (242)
                      ++++..+..++
T Consensus       288 ~l~i~e~~~~~  298 (358)
T 1zg3_A          288 KVIIIDISIDE  298 (358)
T ss_dssp             EEEEEECEECT
T ss_pred             EEEEEEeccCC
Confidence            99998776544

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.22  E-value=2.8e-06  Score=74.74  Aligned_cols=117  Identities=13%  Similarity=0.032  Sum_probs=72.2

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..++.+...              ..|..+|+.-|+.. +.-...+      ........ .--+..
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~--------------~~~~~~v~gvD~s~-~~~~~a~------~~~~~~~~-~~~v~~  174 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYS--------------ACPGVQLVGIDYDP-EALDGAT------RLAAGHAL-AGQITL  174 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCT--------------TCTTCEEEEEESCH-HHHHHHH------HHHTTSTT-GGGEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHh--------------cCCCCeEEEEECCH-HHHHHHH------HHHHhcCC-CCceEE
Confidence            34689999999999887755300              12356788778742 1111111      11110000 111223


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+-.++ +++|++++..++||+.+.                              .....||+.-.+-|+|||++
T Consensus       175 ~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~------------------------------~~~~~~l~~~~~~LkpgG~l  223 (305)
T 3ocj_A          175 HRQDAWKLDTR-EGYDLLTSNGLNIYEPDD------------------------------ARVTELYRRFWQALKPGGAL  223 (305)
T ss_dssp             EECCGGGCCCC-SCEEEEECCSSGGGCCCH------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             EECchhcCCcc-CCeEEEEECChhhhcCCH------------------------------HHHHHHHHHHHHhcCCCeEE
Confidence            55677665556 999999999999985431                              12233777778889999999


Q ss_pred             EEEecccCCC
Q 043411          209 FLTFLGRSIA  218 (242)
Q Consensus       209 vl~~~g~~~~  218 (242)
                      +++.+.+...
T Consensus       224 ~i~~~~~~~~  233 (305)
T 3ocj_A          224 VTSFLTPPPA  233 (305)
T ss_dssp             EEECCCCCTT
T ss_pred             EEEecCCCCc
Confidence            9999877543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.21  E-value=8.8e-07  Score=73.46  Aligned_cols=88  Identities=17%  Similarity=0.197  Sum_probs=59.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.                    .+++.-|+...       .              -.+   +
T Consensus        67 ~~~~vLDiG~G~G~~~~~l~--------------------~~v~~~D~s~~-------~--------------~~~---~  102 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSIR--------------------NPVHCFDLASL-------D--------------PRV---T  102 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHCC--------------------SCEEEEESSCS-------S--------------TTE---E
T ss_pred             CCCeEEEECCcCCHHHHHhh--------------------ccEEEEeCCCC-------C--------------ceE---E
Confidence            45799999999998766441                    24555566533       0              011   2


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+--++++++|++++..++||    +.                              ...+|+.-.+-|+|||+++
T Consensus       103 ~~d~~~~~~~~~~fD~v~~~~~l~~----~~------------------------------~~~~l~~~~~~L~~gG~l~  148 (215)
T 2zfu_A          103 VCDMAQVPLEDESVDVAVFCLSLMG----TN------------------------------IRDFLEEANRVLKPGGLLK  148 (215)
T ss_dssp             ESCTTSCSCCTTCEEEEEEESCCCS----SC------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred             EeccccCCCCCCCEeEEEEehhccc----cC------------------------------HHHHHHHHHHhCCCCeEEE
Confidence            3344443467889999999999996    11                              1226767777889999999


Q ss_pred             EEeccc
Q 043411          210 LTFLGR  215 (242)
Q Consensus       210 l~~~g~  215 (242)
                      ++.+..
T Consensus       149 i~~~~~  154 (215)
T 2zfu_A          149 VAEVSS  154 (215)
T ss_dssp             EEECGG
T ss_pred             EEEcCC
Confidence            987654

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.20  E-value=7e-06  Score=73.09  Aligned_cols=48  Identities=21%  Similarity=0.373  Sum_probs=38.6

Q ss_pred             CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411          138 FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR  215 (242)
Q Consensus       138 ~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  215 (242)
                      +|++++|+|.|..++||+-+.+.                              ...+|+.-++-|+|||+|+++++.+
T Consensus       125 ~~~~~FD~V~~~~~lhy~~~~~~------------------------------~~~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          125 FYFGKFNIIDWQFAIHYSFHPRH------------------------------YATVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             CCSSCEEEEEEESCGGGTCSTTT------------------------------HHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             ccCCCeeEEEECchHHHhCCHHH------------------------------HHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            67899999999999999644222                              1238889999999999999998853

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.18  E-value=3.3e-06  Score=73.93  Aligned_cols=111  Identities=16%  Similarity=0.172  Sum_probs=67.1

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCC-Cceeecc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFG-PCFIAGM  129 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~-~~f~~~v  129 (242)
                      ..+|+|+|||+|..+..+.+.                 ..+|+.-|+.. ..-...+      ......... ..-+..+
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~-----------------~~~v~gvD~s~-~~~~~a~------~~~~~~~~~~~~~v~~~  138 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDL-----------------GWEVTALELST-SVLAAFR------KRLAEAPADVRDRCTLV  138 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTT-----------------TCCEEEEESCH-HHHHHHH------HHHHTSCHHHHTTEEEE
T ss_pred             CCcEEEEeccCCHHHHHHHHc-----------------CCeEEEEECCH-HHHHHHH------HHHhhcccccccceEEE
Confidence            349999999999998877521                 14566666641 1111111      111100000 0012234


Q ss_pred             ccccccccCCCCceeEEE-cccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          130 LGSFYQRLFPSRGINFIH-SSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~-Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      .+++.+ +-+++++|+|+ +..++||++.                               .|...+|+.-.+-|+|||+|
T Consensus       139 ~~d~~~-~~~~~~fD~v~~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~L~pgG~l  186 (299)
T 3g2m_A          139 QGDMSA-FALDKRFGTVVISSGSINELDE-------------------------------ADRRGLYASVREHLEPGGKF  186 (299)
T ss_dssp             ECBTTB-CCCSCCEEEEEECHHHHTTSCH-------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             eCchhc-CCcCCCcCEEEECCcccccCCH-------------------------------HHHHHHHHHHHHHcCCCcEE
Confidence            456644 34478999887 5677888532                               24555888888899999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++.++....
T Consensus       187 ~~~~~~~~~  195 (299)
T 3g2m_A          187 LLSLAMSEA  195 (299)
T ss_dssp             EEEEECCHH
T ss_pred             EEEeecCcc
Confidence            999987653

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.18  E-value=1.1e-05  Score=70.94  Aligned_cols=110  Identities=14%  Similarity=0.170  Sum_probs=67.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..                ..+|+--|+.. +.-...+      .........+ -+..+
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~----------------~~~v~gvD~s~-~~~~~a~------~~~~~~~~~~-~v~~~  145 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERF----------------DVNVIGLTLSK-NQHARCE------QVLASIDTNR-SRQVL  145 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH----------------CCEEEEEESCH-HHHHHHH------HHHHTSCCSS-CEEEE
T ss_pred             CcCEEEEEcccchHHHHHHHHHC----------------CCEEEEEECCH-HHHHHHH------HHHHhcCCCC-ceEEE
Confidence            45799999999999887665322                13666666642 1111111      1111100000 11223


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++ ..+ | +++|++++..++|++..                               .|+..+|+.-.+-|+|||+++
T Consensus       146 ~~d~-~~~-~-~~fD~v~~~~~l~~~~~-------------------------------~~~~~~l~~~~~~LkpgG~l~  191 (318)
T 2fk8_A          146 LQGW-EDF-A-EPVDRIVSIEAFEHFGH-------------------------------ENYDDFFKRCFNIMPADGRMT  191 (318)
T ss_dssp             ESCG-GGC-C-CCCSEEEEESCGGGTCG-------------------------------GGHHHHHHHHHHHSCTTCEEE
T ss_pred             ECCh-HHC-C-CCcCEEEEeChHHhcCH-------------------------------HHHHHHHHHHHHhcCCCcEEE
Confidence            3455 333 4 89999999999998642                               123347777788899999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      +..+....
T Consensus       192 ~~~~~~~~  199 (318)
T 2fk8_A          192 VQSSVSYH  199 (318)
T ss_dssp             EEEEECCC
T ss_pred             EEEeccCC
Confidence            99987654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.17  E-value=9.8e-06  Score=68.44  Aligned_cols=110  Identities=10%  Similarity=0.042  Sum_probs=65.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.        +.       .+ -+|+.-|+.. +.-...+.      ......   .-+..+
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~--------~~-------~~-~~v~gvD~s~-~~l~~a~~------~~~~~~---~~v~~~  113 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQ--------EA-------PI-DEHWIIECND-GVFQRLRD------WAPRQT---HKVIPL  113 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHH--------TS-------CE-EEEEEEECCH-HHHHHHHH------HGGGCS---SEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHH--------hc-------CC-CeEEEEcCCH-HHHHHHHH------HHHhcC---CCeEEE
Confidence            45899999999999887663        11       12 3677777752 11111111      111111   112234


Q ss_pred             ccccccc--cCCCCceeEEEc-ccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          130 LGSFYQR--LFPSRGINFIHS-SYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       130 pgSFy~~--l~p~~svdl~~S-s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      -+++.+.  -++++++|+|++ .+++++ .....                            .++..+|+.-.+-|+|||
T Consensus       114 ~~d~~~~~~~~~~~~fD~V~~d~~~~~~-~~~~~----------------------------~~~~~~l~~~~r~LkpgG  164 (236)
T 1zx0_A          114 KGLWEDVAPTLPDGHFDGILYDTYPLSE-ETWHT----------------------------HQFNFIKNHAFRLLKPGG  164 (236)
T ss_dssp             ESCHHHHGGGSCTTCEEEEEECCCCCBG-GGTTT----------------------------HHHHHHHHTHHHHEEEEE
T ss_pred             ecCHHHhhcccCCCceEEEEECCcccch-hhhhh----------------------------hhHHHHHHHHHHhcCCCe
Confidence            4566444  478899999999 666522 22111                            234457777788899999


Q ss_pred             eEEEEecc
Q 043411          207 RMFLTFLG  214 (242)
Q Consensus       207 ~lvl~~~g  214 (242)
                      +|++..+.
T Consensus       165 ~l~~~~~~  172 (236)
T 1zx0_A          165 VLTYCNLT  172 (236)
T ss_dssp             EEEECCHH
T ss_pred             EEEEEecC
Confidence            99987664

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.17  E-value=6.4e-06  Score=67.37  Aligned_cols=105  Identities=14%  Similarity=0.096  Sum_probs=64.7

Q ss_pred             EEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccc
Q 043411           53 NVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGS  132 (242)
Q Consensus        53 ~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgS  132 (242)
                      +|+|+|||+|..+..+.+        .         ..+++.-|+.. ..-...+      ........   -+..+.++
T Consensus        32 ~vLdiGcG~G~~~~~l~~--------~---------~~~v~~vD~s~-~~~~~a~------~~~~~~~~---~~~~~~~d   84 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLAS--------L---------GYEVTAVDQSS-VGLAKAK------QLAQEKGV---KITTVQSN   84 (202)
T ss_dssp             EEEECCCSCTHHHHHHHT--------T---------TCEEEEECSSH-HHHHHHH------HHHHHHTC---CEEEECCB
T ss_pred             CEEEECCCCCHhHHHHHh--------C---------CCeEEEEECCH-HHHHHHH------HHHHhcCC---ceEEEEcC
Confidence            999999999998876641        1         14677777642 1111111      11111111   12234446


Q ss_pred             cccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEe
Q 043411          133 FYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTF  212 (242)
Q Consensus       133 Fy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~  212 (242)
                      +.+--+|++++|+++++. .||    +.                            .|...+|+.-.+-|+|||++++..
T Consensus        85 ~~~~~~~~~~fD~v~~~~-~~~----~~----------------------------~~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A           85 LADFDIVADAWEGIVSIF-CHL----PS----------------------------SLRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             TTTBSCCTTTCSEEEEEC-CCC----CH----------------------------HHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             hhhcCCCcCCccEEEEEh-hcC----CH----------------------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence            655456789999999853 344    21                            244558888888999999999999


Q ss_pred             cccCC
Q 043411          213 LGRSI  217 (242)
Q Consensus       213 ~g~~~  217 (242)
                      +...+
T Consensus       132 ~~~~~  136 (202)
T 2kw5_A          132 FAPEQ  136 (202)
T ss_dssp             ECTTT
T ss_pred             ecccc
Confidence            87655

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.16  E-value=4.8e-06  Score=69.90  Aligned_cols=113  Identities=16%  Similarity=0.162  Sum_probs=64.1

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..++.+.+..               |..+++--|+-. +.-...      ..........++-  .+.
T Consensus        39 ~~~vLDiGcG~G~~~~~la~~~---------------p~~~v~giD~s~-~~l~~a------~~~~~~~~~~nv~--~~~   94 (213)
T 2fca_A           39 NPIHIEVGTGKGQFISGMAKQN---------------PDINYIGIELFK-SVIVTA------VQKVKDSEAQNVK--LLN   94 (213)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHC---------------TTSEEEEECSCH-HHHHHH------HHHHHHSCCSSEE--EEC
T ss_pred             CceEEEEecCCCHHHHHHHHHC---------------CCCCEEEEEech-HHHHHH------HHHHHHcCCCCEE--EEe
Confidence            5689999999999988765221               346777777652 111110      1111111122322  233


Q ss_pred             ccccc--ccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          131 GSFYQ--RLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       131 gSFy~--~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      ++..+  ..+|++++|.++......|....-.     +..+                    ....||+.-++-|+|||.+
T Consensus        95 ~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~-----~~rl--------------------~~~~~l~~~~~~LkpgG~l  149 (213)
T 2fca_A           95 IDADTLTDVFEPGEVKRVYLNFSDPWPKKRHE-----KRRL--------------------TYSHFLKKYEEVMGKGGSI  149 (213)
T ss_dssp             CCGGGHHHHCCTTSCCEEEEESCCCCCSGGGG-----GGST--------------------TSHHHHHHHHHHHTTSCEE
T ss_pred             CCHHHHHhhcCcCCcCEEEEECCCCCcCcccc-----cccc--------------------CcHHHHHHHHHHcCCCCEE
Confidence            44432  3478999999998777667432100     0000                    0122677777778999999


Q ss_pred             EEEe
Q 043411          209 FLTF  212 (242)
Q Consensus       209 vl~~  212 (242)
                      ++.+
T Consensus       150 ~~~t  153 (213)
T 2fca_A          150 HFKT  153 (213)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9976

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.16  E-value=2e-05  Score=72.59  Aligned_cols=108  Identities=17%  Similarity=0.133  Sum_probs=69.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.+.                 ..+|+..|.-.     -.-  ...+..+......   +..+
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~-----------------g~~V~gvDis~-----~al--~~A~~n~~~~~~~---v~~~  285 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM-----------------GAEVVGVEDDL-----ASV--LSLQKGLEANALK---AQAL  285 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT-----------------TCEEEEEESBH-----HHH--HHHHHHHHHTTCC---CEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc-----------------CCEEEEEECCH-----HHH--HHHHHHHHHcCCC---eEEE
Confidence            3579999999999999877521                 14677767641     110  1111111111112   2234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+-+.+++++|+|++...+||-.....                            .+...|++.-.+-|+|||+++
T Consensus       286 ~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~----------------------------~~~~~~l~~~~~~LkpGG~l~  337 (381)
T 3dmg_A          286 HSDVDEALTEEARFDIIVTNPPFHVGGAVIL----------------------------DVAQAFVNVAAARLRPGGVFF  337 (381)
T ss_dssp             ECSTTTTSCTTCCEEEEEECCCCCTTCSSCC----------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             EcchhhccccCCCeEEEEECCchhhcccccH----------------------------HHHHHHHHHHHHhcCcCcEEE
Confidence            4577666667789999999988988443322                            345558888888899999999


Q ss_pred             EEe
Q 043411          210 LTF  212 (242)
Q Consensus       210 l~~  212 (242)
                      ++.
T Consensus       338 iv~  340 (381)
T 3dmg_A          338 LVS  340 (381)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            974

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.15  E-value=7.3e-06  Score=68.24  Aligned_cols=113  Identities=14%  Similarity=0.137  Sum_probs=64.5

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..++.+.+..               |..+++--|+.. +.-...      +.........++-  .+.
T Consensus        42 ~~~vLDiGcG~G~~~~~la~~~---------------p~~~v~gvD~s~-~~l~~a------~~~~~~~~~~~v~--~~~   97 (214)
T 1yzh_A           42 NPIHVEVGSGKGAFVSGMAKQN---------------PDINYIGIDIQK-SVLSYA------LDKVLEVGVPNIK--LLW   97 (214)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHC---------------TTSEEEEEESCH-HHHHHH------HHHHHHHCCSSEE--EEE
T ss_pred             CCeEEEEccCcCHHHHHHHHHC---------------CCCCEEEEEcCH-HHHHHH------HHHHHHcCCCCEE--EEe
Confidence            5689999999999988765221               346778777752 111111      1111111112322  233


Q ss_pred             ccccc--ccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          131 GSFYQ--RLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       131 gSFy~--~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      ++..+  ..++++++|++++....+|....-.     +..                    -+...||+.-.+-|+|||++
T Consensus        98 ~d~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~-----~~~--------------------~~~~~~l~~~~~~LkpgG~l  152 (214)
T 1yzh_A           98 VDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHE-----KRR--------------------LTYKTFLDTFKRILPENGEI  152 (214)
T ss_dssp             CCSSCGGGTSCTTCCSEEEEESCCCCCSGGGG-----GGS--------------------TTSHHHHHHHHHHSCTTCEE
T ss_pred             CCHHHHHhhcCCCCCCEEEEECCCCccccchh-----hhc--------------------cCCHHHHHHHHHHcCCCcEE
Confidence            34433  3478899999999877777431100     000                    01223777777788999999


Q ss_pred             EEEe
Q 043411          209 FLTF  212 (242)
Q Consensus       209 vl~~  212 (242)
                      ++.+
T Consensus       153 ~~~~  156 (214)
T 1yzh_A          153 HFKT  156 (214)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9864

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.14  E-value=2.4e-06  Score=72.51  Aligned_cols=57  Identities=9%  Similarity=0.001  Sum_probs=40.8

Q ss_pred             ccccccccc-CCC---CceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043411          129 MLGSFYQRL-FPS---RGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVS  204 (242)
Q Consensus       129 vpgSFy~~l-~p~---~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~p  204 (242)
                      +.+++.+.. +++   +++|+|++..++|++..-                             ..|+..+|+.-.+-|+|
T Consensus       140 ~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~-----------------------------~~~~~~~l~~~~~~Lkp  190 (265)
T 2i62_A          140 LKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPD-----------------------------LPAYRTALRNLGSLLKP  190 (265)
T ss_dssp             EECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSS-----------------------------HHHHHHHHHHHHTTEEE
T ss_pred             EEeeeccCCCCCccccCCccEEEEhhhhhhhcCC-----------------------------hHHHHHHHHHHHhhCCC
Confidence            344554432 256   899999999999965321                             12455588888899999


Q ss_pred             CceEEEEecc
Q 043411          205 GGRMFLTFLG  214 (242)
Q Consensus       205 GG~lvl~~~g  214 (242)
                      ||+|+++...
T Consensus       191 gG~li~~~~~  200 (265)
T 2i62_A          191 GGFLVMVDAL  200 (265)
T ss_dssp             EEEEEEEEES
T ss_pred             CcEEEEEecC
Confidence            9999998754

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.12  E-value=4.6e-06  Score=75.14  Aligned_cols=108  Identities=16%  Similarity=0.191  Sum_probs=69.1

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..++.+.+..               |..+++.-|+|  +.-...+..      +...... --+..
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~---------------~~~~~~~~D~~--~~~~~a~~~------~~~~~~~-~~v~~  236 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRA---------------PHLRGTLVELA--GPAERARRR------FADAGLA-DRVTV  236 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHC---------------TTCEEEEEECH--HHHHHHHHH------HHHTTCT-TTEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHC---------------CCCEEEEEeCH--HHHHHHHHH------HHhcCCC-CceEE
Confidence            346899999999998877665221               35788888884  333322211      1111000 01234


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+ -+|.+ +|++++...+|++++                               .+...+|+.-.+-|+|||++
T Consensus       237 ~~~d~~~-~~~~~-~D~v~~~~vl~~~~~-------------------------------~~~~~~l~~~~~~L~pgG~l  283 (374)
T 1qzz_A          237 AEGDFFK-PLPVT-ADVVLLSFVLLNWSD-------------------------------EDALTILRGCVRALEPGGRL  283 (374)
T ss_dssp             EECCTTS-CCSCC-EEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             EeCCCCC-cCCCC-CCEEEEeccccCCCH-------------------------------HHHHHHHHHHHHhcCCCcEE
Confidence            5668876 34544 999999999986332                               12234788888889999999


Q ss_pred             EEEec
Q 043411          209 FLTFL  213 (242)
Q Consensus       209 vl~~~  213 (242)
                      ++..+
T Consensus       284 ~i~e~  288 (374)
T 1qzz_A          284 LVLDR  288 (374)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99877

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.12  E-value=2e-05  Score=63.61  Aligned_cols=116  Identities=12%  Similarity=0.086  Sum_probs=59.9

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..|+.+.+.                 ..+|+--|+-. +.-...      +.........++-+. 
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~-----------------~~~v~~vD~s~-~~l~~a------~~~~~~~~~~~v~~~-   75 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL-----------------SKKVYAFDVQE-QALGKT------SQRLSDLGIENTELI-   75 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT-----------------SSEEEEEESCH-HHHHHH------HHHHHHHTCCCEEEE-
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh-----------------CCEEEEEECCH-HHHHHH------HHHHHHcCCCcEEEE-
Confidence            34579999999999999877521                 25666666641 111111      111111111232221 


Q ss_pred             ccccccccc--CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          129 MLGSFYQRL--FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       129 vpgSFy~~l--~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                       -+++. .+  ++++++|++++.  ++|+......+.                      ....+...+|+.-.+-|+|||
T Consensus        76 -~~~~~-~l~~~~~~~fD~v~~~--~~~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~LkpgG  129 (185)
T 3mti_A           76 -LDGHE-NLDHYVREPIRAAIFN--LGYLPSADKSVI----------------------TKPHTTLEAIEKILDRLEVGG  129 (185)
T ss_dssp             -ESCGG-GGGGTCCSCEEEEEEE--EC---------------------------------CHHHHHHHHHHHHHHEEEEE
T ss_pred             -eCcHH-HHHhhccCCcCEEEEe--CCCCCCcchhcc----------------------cChhhHHHHHHHHHHhcCCCc
Confidence             13442 22  457899999774  355432111100                      001233446777778899999


Q ss_pred             eEEEEeccc
Q 043411          207 RMFLTFLGR  215 (242)
Q Consensus       207 ~lvl~~~g~  215 (242)
                      ++++..+..
T Consensus       130 ~l~i~~~~~  138 (185)
T 3mti_A          130 RLAIMIYYG  138 (185)
T ss_dssp             EEEEEEC--
T ss_pred             EEEEEEeCC
Confidence            999988754

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.09  E-value=3.2e-06  Score=71.42  Aligned_cols=108  Identities=16%  Similarity=0.075  Sum_probs=62.3

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ....+|+|+|||+|.++..+.+..               +  +|+--|+.. ..-...+      ...   ...++  ..
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~---------------~--~v~gvD~s~-~~~~~a~------~~~---~~~~~--~~  105 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFF---------------P--RVIGLDVSK-SALEIAA------KEN---TAANI--SY  105 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHS---------------S--CEEEEESCH-HHHHHHH------HHS---CCTTE--EE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhC---------------C--CEEEEECCH-HHHHHHH------HhC---cccCc--eE
Confidence            345789999999999988776321               1  444455531 1111111      000   00111  11


Q ss_pred             cccccccccCC-----CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043411          129 MLGSFYQRLFP-----SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIV  203 (242)
Q Consensus       129 vpgSFy~~l~p-----~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~  203 (242)
                      +-+++.+--++     ..++|++++..++||+..                               .|...+|+.-.+-|+
T Consensus       106 ~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~Lk  154 (245)
T 3ggd_A          106 RLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPV-------------------------------EKRELLGQSLRILLG  154 (245)
T ss_dssp             EECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCG-------------------------------GGHHHHHHHHHHHHT
T ss_pred             EECcccccccccccccccCccEEEEcchhhcCCH-------------------------------HHHHHHHHHHHHHcC
Confidence            22344331111     134899999999999642                               123337777778889


Q ss_pred             cCceEEEEecccC
Q 043411          204 SGGRMFLTFLGRS  216 (242)
Q Consensus       204 pGG~lvl~~~g~~  216 (242)
                      |||+|++..++..
T Consensus       155 pgG~l~i~~~~~~  167 (245)
T 3ggd_A          155 KQGAMYLIELGTG  167 (245)
T ss_dssp             TTCEEEEEEECTT
T ss_pred             CCCEEEEEeCCcc
Confidence            9999999888654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.08  E-value=6.8e-06  Score=68.76  Aligned_cols=105  Identities=19%  Similarity=0.328  Sum_probs=62.8

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..+..+.+.                  .+++.-|+.. ..-...+      ........+-.|   +.
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~------------------~~v~~vD~s~-~~~~~a~------~~~~~~~~~~~~---~~   85 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH------------------YEVTGVDLSE-EMLEIAQ------EKAMETNRHVDF---WV   85 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT------------------SEEEEEESCH-HHHHHHH------HHHHHTTCCCEE---EE
T ss_pred             CCeEEEecCCCCHHHHHHhhC------------------CeEEEEECCH-HHHHHHH------HhhhhcCCceEE---EE
Confidence            479999999999988766411                  3555556531 1111111      111111111122   33


Q ss_pred             cccccccCCCCceeEEEccc-ceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          131 GSFYQRLFPSRGINFIHSSY-SVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~-alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      +++.+-.+ ++++|++++.. ++||+...                              .+...+|+.-.+-|+|||+++
T Consensus        86 ~d~~~~~~-~~~fD~v~~~~~~~~~~~~~------------------------------~~~~~~l~~~~~~L~pgG~l~  134 (243)
T 3d2l_A           86 QDMRELEL-PEPVDAITILCDSLNYLQTE------------------------------ADVKQTFDSAARLLTDGGKLL  134 (243)
T ss_dssp             CCGGGCCC-SSCEEEEEECTTGGGGCCSH------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             cChhhcCC-CCCcCEEEEeCCchhhcCCH------------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence            45543333 48999999986 88886321                              244557888888899999999


Q ss_pred             EEecc
Q 043411          210 LTFLG  214 (242)
Q Consensus       210 l~~~g  214 (242)
                      +.+..
T Consensus       135 ~~~~~  139 (243)
T 3d2l_A          135 FDVHS  139 (243)
T ss_dssp             EEEEC
T ss_pred             EEcCC
Confidence            97653

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.08  E-value=1.3e-05  Score=72.55  Aligned_cols=106  Identities=15%  Similarity=0.159  Sum_probs=66.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      +..+|+|+|||+|..++.+.+        .        +..+|+--|+.  +.-...+...      ......+ -+..+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~--------~--------g~~~v~gvD~s--~~l~~a~~~~------~~~~~~~-~v~~~  120 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAK--------A--------GARKVIGIECS--SISDYAVKIV------KANKLDH-VVTII  120 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHH--------T--------TCSEEEEEECS--THHHHHHHHH------HHTTCTT-TEEEE
T ss_pred             CCCEEEEEeccchHHHHHHHH--------C--------CCCEEEEECcH--HHHHHHHHHH------HHcCCCC-cEEEE
Confidence            357999999999998877652        1        13578888876  3333332211      1111111 12234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+--+|.+++|+|+|....+++...+.                              +..+|+.+.+-|+|||+|+
T Consensus       121 ~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~------------------------------~~~~l~~~~r~LkpgG~li  170 (349)
T 3q7e_A          121 KGKVEEVELPVEKVDIIISEWMGYCLFYESM------------------------------LNTVLHARDKWLAPDGLIF  170 (349)
T ss_dssp             ESCTTTCCCSSSCEEEEEECCCBBTBTBTCC------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred             ECcHHHccCCCCceEEEEEccccccccCchh------------------------------HHHHHHHHHHhCCCCCEEc
Confidence            5577555578899999999766555433222                              2348889999999999997


Q ss_pred             E
Q 043411          210 L  210 (242)
Q Consensus       210 l  210 (242)
                      .
T Consensus       171 ~  171 (349)
T 3q7e_A          171 P  171 (349)
T ss_dssp             S
T ss_pred             c
Confidence            3

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.08  E-value=1.6e-05  Score=68.80  Aligned_cols=109  Identities=13%  Similarity=0.063  Sum_probs=67.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCC-ceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGP-CFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~-~f~~~  128 (242)
                      .-.+|+|+|||+|..|..+...+ .             |+-.||--|.-. ++-...+..      .  .+.++ ..+.+
T Consensus        77 pG~~VldlG~G~G~~~~~la~~V-G-------------~~G~V~avD~s~-~~~~~l~~~------a--~~~~ni~~V~~  133 (233)
T 4df3_A           77 EGDRILYLGIASGTTASHMSDII-G-------------PRGRIYGVEFAP-RVMRDLLTV------V--RDRRNIFPILG  133 (233)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-C-------------TTCEEEEEECCH-HHHHHHHHH------S--TTCTTEEEEES
T ss_pred             CCCEEEEecCcCCHHHHHHHHHh-C-------------CCceEEEEeCCH-HHHHHHHHh------h--HhhcCeeEEEE
Confidence            35899999999999999876433 1             356777766652 111111111      0  11223 44556


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      ..+....-.++.+++|++++..+.||                                   |-..++..-.+-|||||++
T Consensus       134 d~~~p~~~~~~~~~vDvVf~d~~~~~-----------------------------------~~~~~l~~~~r~LKpGG~l  178 (233)
T 4df3_A          134 DARFPEKYRHLVEGVDGLYADVAQPE-----------------------------------QAAIVVRNARFFLRDGGYM  178 (233)
T ss_dssp             CTTCGGGGTTTCCCEEEEEECCCCTT-----------------------------------HHHHHHHHHHHHEEEEEEE
T ss_pred             eccCccccccccceEEEEEEeccCCh-----------------------------------hHHHHHHHHHHhccCCCEE
Confidence            66666555678889999987544443                                   1112555556667999999


Q ss_pred             EEEecccC
Q 043411          209 FLTFLGRS  216 (242)
Q Consensus       209 vl~~~g~~  216 (242)
                      +++.-.+.
T Consensus       179 vI~ik~r~  186 (233)
T 4df3_A          179 LMAIKARS  186 (233)
T ss_dssp             EEEEECCH
T ss_pred             EEEEeccc
Confidence            99876554

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.08  E-value=8.9e-06  Score=72.97  Aligned_cols=108  Identities=17%  Similarity=0.258  Sum_probs=69.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..               |..+++.-|+|  +.-...+..      ....... --+..+
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~---------------~~~~~~~~D~~--~~~~~a~~~------~~~~~~~-~~v~~~  238 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRA---------------PHVSATVLEMA--GTVDTARSY------LKDEGLS-DRVDVV  238 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHC---------------TTCEEEEEECT--THHHHHHHH------HHHTTCT-TTEEEE
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhC---------------CCCEEEEecCH--HHHHHHHHH------HHhcCCC-CceEEE
Confidence            46799999999999887665221               35788888885  443333221      1111000 012345


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+ -+|. .+|++++...+|.+++                               .+...+|+.-.+-|+|||+++
T Consensus       239 ~~d~~~-~~~~-~~D~v~~~~vl~~~~~-------------------------------~~~~~~l~~~~~~L~pgG~l~  285 (360)
T 1tw3_A          239 EGDFFE-PLPR-KADAIILSFVLLNWPD-------------------------------HDAVRILTRCAEALEPGGRIL  285 (360)
T ss_dssp             ECCTTS-CCSS-CEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHTEEEEEEEE
T ss_pred             eCCCCC-CCCC-CccEEEEcccccCCCH-------------------------------HHHHHHHHHHHHhcCCCcEEE
Confidence            668875 3454 4999999999975321                               123447888888999999999


Q ss_pred             EEecc
Q 043411          210 LTFLG  214 (242)
Q Consensus       210 l~~~g  214 (242)
                      +..+.
T Consensus       286 i~e~~  290 (360)
T 1tw3_A          286 IHERD  290 (360)
T ss_dssp             EEECC
T ss_pred             EEEEe
Confidence            98776

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.05  E-value=2.8e-05  Score=63.07  Aligned_cols=119  Identities=18%  Similarity=0.192  Sum_probs=65.7

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.+..    ...  ..+...+..+|+-.|+...      ..++           .-.++  .
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~~----~~~--~~~~~~~~~~v~~vD~s~~------~~~~-----------~~~~~--~   76 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQKV----NAA--GTDPSSPVGFVLGVDLLHI------FPLE-----------GATFL--C   76 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHHT----TTT--CCCTTSCCCEEEEECSSCC------CCCT-----------TCEEE--C
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh----ccc--cccccCCCceEEEEechhc------ccCC-----------CCeEE--E
Confidence            45799999999999988776332    000  0000112267888888631      0011           01111  0


Q ss_pred             cccccc--------ccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 043411          130 LGSFYQ--------RLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEE  201 (242)
Q Consensus       130 pgSFy~--------~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~E  201 (242)
                      .+++..        ..++.+++|+++|..++||.-..                    ....  .........+|+.-.+-
T Consensus        77 ~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~--------------------~~~~--~~~~~~~~~~l~~~~~~  134 (196)
T 2nyu_A           77 PADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFR--------------------DLDH--DRLISLCLTLLSVTPDI  134 (196)
T ss_dssp             SCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCH--------------------HHHH--HHHHHHHHHHHHHHHHH
T ss_pred             eccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCc--------------------ccCH--HHHHHHHHHHHHHHHHH
Confidence            233322        22566799999997766652110                    0000  01122334577777888


Q ss_pred             hccCceEEEEeccc
Q 043411          202 IVSGGRMFLTFLGR  215 (242)
Q Consensus       202 L~pGG~lvl~~~g~  215 (242)
                      |+|||+|++..+..
T Consensus       135 LkpgG~lv~~~~~~  148 (196)
T 2nyu_A          135 LQPGGTFLCKTWAG  148 (196)
T ss_dssp             EEEEEEEEEEECCS
T ss_pred             hcCCCEEEEEecCC
Confidence            99999999987643

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.04  E-value=1.9e-05  Score=67.58  Aligned_cols=99  Identities=20%  Similarity=0.222  Sum_probs=59.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..               +..+++.-|+..           ...........+-.|   +
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~---------------~~~~v~~vD~s~-----------~~~~~a~~~~~~~~~---~  135 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADAL---------------PEITTFGLDVSK-----------VAIKAAAKRYPQVTF---C  135 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTC---------------TTSEEEEEESCH-----------HHHHHHHHHCTTSEE---E
T ss_pred             CCCEEEEECCCCCHHHHHHHHhC---------------CCCeEEEEeCCH-----------HHHHHHHHhCCCcEE---E
Confidence            45799999999999988765221               124666667642           111111100001122   3


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++..--++++++|++++..+       |.                                 +|+.-.+-|+|||+++
T Consensus       136 ~~d~~~~~~~~~~fD~v~~~~~-------~~---------------------------------~l~~~~~~L~pgG~l~  175 (269)
T 1p91_A          136 VASSHRLPFSDTSMDAIIRIYA-------PC---------------------------------KAEELARVVKPGGWVI  175 (269)
T ss_dssp             ECCTTSCSBCTTCEEEEEEESC-------CC---------------------------------CHHHHHHHEEEEEEEE
T ss_pred             EcchhhCCCCCCceeEEEEeCC-------hh---------------------------------hHHHHHHhcCCCcEEE
Confidence            3355443467889999998543       22                                 3444455679999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      +...+.+.
T Consensus       176 ~~~~~~~~  183 (269)
T 1p91_A          176 TATPGPRH  183 (269)
T ss_dssp             EEEECTTT
T ss_pred             EEEcCHHH
Confidence            99887643

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.02  E-value=6.1e-06  Score=67.93  Aligned_cols=104  Identities=16%  Similarity=0.128  Sum_probs=62.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.        +.        +..+++.-|+.. +.-...      +.........+  +..+
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~--------~~--------~~~~v~~vD~s~-~~~~~a------~~~~~~~~~~~--v~~~  114 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAH--------KL--------GAKSVLATDISD-ESMTAA------EENAALNGIYD--IALQ  114 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHH--------HT--------TCSEEEEEESCH-HHHHHH------HHHHHHTTCCC--CEEE
T ss_pred             CCCEEEEECCCCCHHHHHHH--------HC--------CCCEEEEEECCH-HHHHHH------HHHHHHcCCCc--eEEE
Confidence            45799999999998877643        11        124677777641 111111      11111111122  3334


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+  ++++++|++++...+||+                                    ..+|+.-.+-|+|||+++
T Consensus       115 ~~d~~~--~~~~~fD~i~~~~~~~~~------------------------------------~~~l~~~~~~L~~gG~l~  156 (205)
T 3grz_A          115 KTSLLA--DVDGKFDLIVANILAEIL------------------------------------LDLIPQLDSHLNEDGQVI  156 (205)
T ss_dssp             ESSTTT--TCCSCEEEEEEESCHHHH------------------------------------HHHGGGSGGGEEEEEEEE
T ss_pred             eccccc--cCCCCceEEEECCcHHHH------------------------------------HHHHHHHHHhcCCCCEEE
Confidence            456644  356899999997655542                                    336777777889999999


Q ss_pred             EEecccC
Q 043411          210 LTFLGRS  216 (242)
Q Consensus       210 l~~~g~~  216 (242)
                      ++.+...
T Consensus       157 ~~~~~~~  163 (205)
T 3grz_A          157 FSGIDYL  163 (205)
T ss_dssp             EEEEEGG
T ss_pred             EEecCcc
Confidence            9766654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=97.99  E-value=5.9e-06  Score=66.24  Aligned_cols=109  Identities=15%  Similarity=0.189  Sum_probs=66.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+.                 ..+++..|+-. +.-...+      .........+.-+..+
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~-----------------~~~v~~~D~~~-~~~~~a~------~~~~~~~~~~~~~~~~  107 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADE-----------------VKSTTMADINR-RAIKLAK------ENIKLNNLDNYDIRVV  107 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG-----------------SSEEEEEESCH-HHHHHHH------HHHHHTTCTTSCEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-----------------CCeEEEEECCH-HHHHHHH------HHHHHcCCCccceEEE
Confidence            4579999999999988766421                 24666666642 1111111      1111111111012234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+ .++++++|++++...+||-                                ..++..+|+.-.+-|+|||+++
T Consensus       108 ~~d~~~-~~~~~~~D~v~~~~~~~~~--------------------------------~~~~~~~l~~~~~~L~~gG~l~  154 (194)
T 1dus_A          108 HSDLYE-NVKDRKYNKIITNPPIRAG--------------------------------KEVLHRIIEEGKELLKDNGEIW  154 (194)
T ss_dssp             ECSTTT-TCTTSCEEEEEECCCSTTC--------------------------------HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ECchhc-ccccCCceEEEECCCcccc--------------------------------hhHHHHHHHHHHHHcCCCCEEE
Confidence            456644 5567899999997776660                                1244558888888899999999


Q ss_pred             EEeccc
Q 043411          210 LTFLGR  215 (242)
Q Consensus       210 l~~~g~  215 (242)
                      +.....
T Consensus       155 ~~~~~~  160 (194)
T 1dus_A          155 VVIQTK  160 (194)
T ss_dssp             EEEEST
T ss_pred             EEECCC
Confidence            998765

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.98  E-value=4e-05  Score=69.14  Aligned_cols=104  Identities=17%  Similarity=0.243  Sum_probs=61.7

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~  128 (242)
                      +..+|+|+|||+|..++.+.+        .        ...+|+.-|..  +.-...+.      ....... .+  +..
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~--------~--------g~~~v~gvD~s--~~~~~a~~------~~~~~~~~~~--i~~  117 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAK--------A--------GAKKVLGVDQS--EILYQAMD------IIRLNKLEDT--ITL  117 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--------T--------TCSEEEEEESS--THHHHHHH------HHHHTTCTTT--EEE
T ss_pred             CCCEEEEeeccCcHHHHHHHH--------c--------CCCEEEEEChH--HHHHHHHH------HHHHcCCCCc--EEE
Confidence            457999999999998776541        1        12477777875  33222221      1111111 12  222


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+--+|++++|+++|....+-+..                              ..++..+|+.+.+-|+|||++
T Consensus       118 ~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~------------------------------~~~~~~~l~~~~~~LkpgG~l  167 (340)
T 2fyt_A          118 IKGKIEEVHLPVEKVDVIISEWMGYFLLF------------------------------ESMLDSVLYAKNKYLAKGGSV  167 (340)
T ss_dssp             EESCTTTSCCSCSCEEEEEECCCBTTBTT------------------------------TCHHHHHHHHHHHHEEEEEEE
T ss_pred             EEeeHHHhcCCCCcEEEEEEcCchhhccC------------------------------HHHHHHHHHHHHhhcCCCcEE
Confidence            44566554567789999999542111110                              023445899999999999999


Q ss_pred             E
Q 043411          209 F  209 (242)
Q Consensus       209 v  209 (242)
                      +
T Consensus       168 i  168 (340)
T 2fyt_A          168 Y  168 (340)
T ss_dssp             E
T ss_pred             E
Confidence            8

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.97  E-value=2e-05  Score=64.82  Aligned_cols=106  Identities=11%  Similarity=0.056  Sum_probs=63.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.+..               |..+++.-|.-. +.-...+.      ........+  +..+
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~---------------~~~~v~~vD~s~-~~~~~a~~------~~~~~~~~~--v~~~   95 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLM---------------PNGRIFALERNP-QYLGFIRD------NLKKFVARN--VTLV   95 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHC---------------TTSEEEEEECCH-HHHHHHHH------HHHHHTCTT--EEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHC---------------CCCEEEEEeCCH-HHHHHHHH------HHHHhCCCc--EEEE
Confidence            45799999999999888765221               346777777742 11111111      111111112  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+.+.+.+++|++++..+++                                    +...+|+.-.+-|+|||+++
T Consensus        96 ~~d~~~~~~~~~~~D~i~~~~~~~------------------------------------~~~~~l~~~~~~LkpgG~l~  139 (204)
T 3e05_A           96 EAFAPEGLDDLPDPDRVFIGGSGG------------------------------------MLEEIIDAVDRRLKSEGVIV  139 (204)
T ss_dssp             ECCTTTTCTTSCCCSEEEESCCTT------------------------------------CHHHHHHHHHHHCCTTCEEE
T ss_pred             eCChhhhhhcCCCCCEEEECCCCc------------------------------------CHHHHHHHHHHhcCCCeEEE
Confidence            456655555557789998854432                                    12237777778889999999


Q ss_pred             EEeccc
Q 043411          210 LTFLGR  215 (242)
Q Consensus       210 l~~~g~  215 (242)
                      +.....
T Consensus       140 ~~~~~~  145 (204)
T 3e05_A          140 LNAVTL  145 (204)
T ss_dssp             EEECBH
T ss_pred             EEeccc
Confidence            987654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.97  E-value=2.3e-05  Score=71.72  Aligned_cols=108  Identities=17%  Similarity=0.228  Sum_probs=67.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      +..+|+|+|||+|..++.+.+        +    +    .-+|+.-|+.  +.-...+....      .....+ -+..+
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~--------~----g----~~~V~gvD~s--~~~~~a~~~~~------~~~~~~-~v~~~  117 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQ--------A----G----ARKVYAVEAT--KMADHARALVK------ANNLDH-IVEVI  117 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHH--------T----T----CSEEEEEESS--TTHHHHHHHHH------HTTCTT-TEEEE
T ss_pred             CCCEEEEeccCcCHHHHHHHh--------c----C----CCEEEEEccH--HHHHHHHHHHH------HcCCCC-eEEEE
Confidence            468999999999998876651        1    1    1378888875  44443332211      111111 12234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .++..+-.+| +++|+|+|....|++...+                              ++..+|+.+.+-|+|||+|+
T Consensus       118 ~~d~~~~~~~-~~~D~Iv~~~~~~~l~~e~------------------------------~~~~~l~~~~~~LkpgG~li  166 (376)
T 3r0q_C          118 EGSVEDISLP-EKVDVIISEWMGYFLLRES------------------------------MFDSVISARDRWLKPTGVMY  166 (376)
T ss_dssp             ESCGGGCCCS-SCEEEEEECCCBTTBTTTC------------------------------THHHHHHHHHHHEEEEEEEE
T ss_pred             ECchhhcCcC-CcceEEEEcChhhcccchH------------------------------HHHHHHHHHHhhCCCCeEEE
Confidence            4566443444 9999999966666654311                              23448889999999999998


Q ss_pred             EEec
Q 043411          210 LTFL  213 (242)
Q Consensus       210 l~~~  213 (242)
                      +...
T Consensus       167 ~~~~  170 (376)
T 3r0q_C          167 PSHA  170 (376)
T ss_dssp             SSEE
T ss_pred             EecC
Confidence            7544

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.96  E-value=3.5e-06  Score=75.90  Aligned_cols=108  Identities=13%  Similarity=0.123  Sum_probs=66.7

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..++.+.+..               |..+++..|...     ..-  ...+...........+   +.
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~---------------~~~~v~~vD~s~-----~~l--~~a~~~~~~~~~~~~~---~~  251 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHS---------------PKIRLTLCDVSA-----PAV--EASRATLAANGVEGEV---FA  251 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHC---------------TTCBCEEEESBH-----HHH--HHHHHHHHHTTCCCEE---EE
T ss_pred             CCeEEEecCccCHHHHHHHHHC---------------CCCEEEEEECCH-----HHH--HHHHHHHHHhCCCCEE---EE
Confidence            4589999999999988765211               335677777641     110  0011111111111122   44


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      ++++.  ++++++|+|++...+||.-.                            ....+...||+.-.+-|+|||.|++
T Consensus       252 ~d~~~--~~~~~fD~Iv~~~~~~~g~~----------------------------~~~~~~~~~l~~~~~~LkpgG~l~i  301 (343)
T 2pjd_A          252 SNVFS--EVKGRFDMIISNPPFHDGMQ----------------------------TSLDAAQTLIRGAVRHLNSGGELRI  301 (343)
T ss_dssp             CSTTT--TCCSCEEEEEECCCCCSSSH----------------------------HHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ccccc--cccCCeeEEEECCCcccCcc----------------------------CCHHHHHHHHHHHHHhCCCCcEEEE
Confidence            56654  34789999999998887211                            0124566799999999999999999


Q ss_pred             Eec
Q 043411          211 TFL  213 (242)
Q Consensus       211 ~~~  213 (242)
                      ...
T Consensus       302 ~~~  304 (343)
T 2pjd_A          302 VAN  304 (343)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            753

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.96  E-value=1.3e-05  Score=73.51  Aligned_cols=111  Identities=14%  Similarity=0.099  Sum_probs=63.4

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeecc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAGM  129 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~v  129 (242)
                      ..+|+|+|||+|..++.+.+..               |..+|+.-|.-. ..-...+      ........ ...-+..+
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~---------------p~~~V~gvD~s~-~al~~Ar------~n~~~ngl~~~~~v~~~  280 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKN---------------PQAKVVFVDESP-MAVASSR------LNVETNMPEALDRCEFM  280 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHC---------------TTCEEEEEESCH-HHHHHHH------HHHHHHCGGGGGGEEEE
T ss_pred             CCeEEEEeCcchHHHHHHHHHC---------------CCCEEEEEECcH-HHHHHHH------HHHHHcCCCcCceEEEE
Confidence            4799999999999988776211               346788877741 1111111      11111000 01112234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++++ .+|++++|+|++.-.+|+...++..                            ....||+.-.+-|+|||+++
T Consensus       281 ~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~----------------------------~~~~~l~~~~~~LkpgG~l~  331 (375)
T 4dcm_A          281 INNALS-GVEPFRFNAVLCNPPFHQQHALTDN----------------------------VAWEMFHHARRCLKINGELY  331 (375)
T ss_dssp             ECSTTT-TCCTTCEEEEEECCCC-------CC----------------------------HHHHHHHHHHHHEEEEEEEE
T ss_pred             echhhc-cCCCCCeeEEEECCCcccCcccCHH----------------------------HHHHHHHHHHHhCCCCcEEE
Confidence            456655 5678899999998888874444331                            11137777777889999999


Q ss_pred             EEe
Q 043411          210 LTF  212 (242)
Q Consensus       210 l~~  212 (242)
                      +..
T Consensus       332 iv~  334 (375)
T 4dcm_A          332 IVA  334 (375)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            965

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.95  E-value=7.1e-06  Score=67.01  Aligned_cols=130  Identities=14%  Similarity=0.078  Sum_probs=62.8

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ....+|+|+|||+|..++.+.+..               +..+++.-|+-. ..-...+..      ....   ..-+..
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~---------------~~~~v~~vD~~~-~~~~~a~~~------~~~~---~~~~~~   83 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALAC---------------PGVSVTAVDLSM-DALAVARRN------AERF---GAVVDW   83 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHC---------------TTEEEEEEECC-----------------------------C
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhC---------------CCCeEEEEECCH-HHHHHHHHH------HHHh---CCceEE
Confidence            356899999999999888776321               246788888752 111111111      0000   001223


Q ss_pred             cccccccccCCC-----CceeEEEcccceeecccC---CCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 043411          129 MLGSFYQRLFPS-----RGINFIHSSYSVHWLSKV---PENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSE  200 (242)
Q Consensus       129 vpgSFy~~l~p~-----~svdl~~Ss~alhWLs~~---P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~  200 (242)
                      +.+++.+ .+++     +++|++++.-..++....   +..+..........+          .......+..|++.-.+
T Consensus        84 ~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~  152 (215)
T 4dzr_A           84 AAADGIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDG----------GEDGLQFYRRMAALPPY  152 (215)
T ss_dssp             CHHHHHH-HHHHHHHTTCCBSEEEECCCCCC----------------------------------CTTHHHHHHHTCCGG
T ss_pred             EEcchHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccC----------CCcHHHHHHHHHHHHHH
Confidence            4456655 4554     899999996555443322   221110000000000          00112334668988889


Q ss_pred             hhccCceEEEEecc
Q 043411          201 EIVSGGRMFLTFLG  214 (242)
Q Consensus       201 EL~pGG~lvl~~~g  214 (242)
                      -|+|||+|++...+
T Consensus       153 ~LkpgG~l~~~~~~  166 (215)
T 4dzr_A          153 VLARGRAGVFLEVG  166 (215)
T ss_dssp             GBCSSSEEEEEECT
T ss_pred             HhcCCCeEEEEEEC
Confidence            99999995555444

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=97.93  E-value=2.8e-05  Score=62.77  Aligned_cols=104  Identities=13%  Similarity=0.033  Sum_probs=62.8

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..++.+.+        +         - +|+--|+..           ..-..     ..++  ..+-
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~--------~---------~-~v~gvD~s~-----------~~~~~-----~~~~--~~~~   67 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRK--------R---------N-TVVSTDLNI-----------RALES-----HRGG--NLVR   67 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTT--------T---------S-EEEEEESCH-----------HHHHT-----CSSS--CEEE
T ss_pred             CCeEEEeccCccHHHHHHHh--------c---------C-cEEEEECCH-----------HHHhc-----ccCC--eEEE
Confidence            45999999999998887641        1         1 666666641           11100     0111  1244


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      +++.+ .++++++|++++...+||.+..+. +..        +   .            |...+++.-.+.| |||++++
T Consensus        68 ~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~-~~~--------~---~------------~~~~~~~~~~~~l-pgG~l~~  121 (170)
T 3q87_B           68 ADLLC-SINQESVDVVVFNPPYVPDTDDPI-IGG--------G---Y------------LGREVIDRFVDAV-TVGMLYL  121 (170)
T ss_dssp             CSTTT-TBCGGGCSEEEECCCCBTTCCCTT-TBC--------C---G------------GGCHHHHHHHHHC-CSSEEEE
T ss_pred             CChhh-hcccCCCCEEEECCCCccCCcccc-ccC--------C---c------------chHHHHHHHHhhC-CCCEEEE
Confidence            56655 566799999999999999776543 110        0   0            1111444444555 9999999


Q ss_pred             EecccC
Q 043411          211 TFLGRS  216 (242)
Q Consensus       211 ~~~g~~  216 (242)
                      ...+..
T Consensus       122 ~~~~~~  127 (170)
T 3q87_B          122 LVIEAN  127 (170)
T ss_dssp             EEEGGG
T ss_pred             EEecCC
Confidence            886653

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.93  E-value=3.5e-05  Score=68.09  Aligned_cols=40  Identities=13%  Similarity=0.137  Sum_probs=32.0

Q ss_pred             CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          140 SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       140 ~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      .+.+|+|+|.+.++|+..  +                             +..+.++.-++-|+|||+|++
T Consensus       211 ~~~fDlI~crnvliyf~~--~-----------------------------~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          211 PGPFDAIFCRNVMIYFDK--T-----------------------------TQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             CCCEEEEEECSSGGGSCH--H-----------------------------HHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCeeEEEECCchHhCCH--H-----------------------------HHHHHHHHHHHHhCCCcEEEE
Confidence            578999999999998743  1                             124478888889999999988

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.92  E-value=3e-05  Score=63.53  Aligned_cols=100  Identities=14%  Similarity=0.079  Sum_probs=60.6

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..++.+....               |..+++..|... +.-...+      .........+  +..+.
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~---------------~~~~v~~vD~s~-~~~~~a~------~~~~~~~~~~--v~~~~  121 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVR---------------PEAHFTLLDSLG-KRVRFLR------QVQHELKLEN--IEPVQ  121 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHC---------------TTSEEEEEESCH-HHHHHHH------HHHHHTTCSS--EEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHHHC---------------CCCEEEEEeCCH-HHHHHHH------HHHHHcCCCC--eEEEe
Confidence            4699999999999998776321               246777777652 1111111      1111111122  23345


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      +++.+ +.|++++|++++.. +                                    .++..+|+.-.+-|+|||++++
T Consensus       122 ~d~~~-~~~~~~~D~i~~~~-~------------------------------------~~~~~~l~~~~~~L~~gG~l~~  163 (207)
T 1jsx_A          122 SRVEE-FPSEPPFDGVISRA-F------------------------------------ASLNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             CCTTT-SCCCSCEEEEECSC-S------------------------------------SSHHHHHHHHTTSEEEEEEEEE
T ss_pred             cchhh-CCccCCcCEEEEec-c------------------------------------CCHHHHHHHHHHhcCCCcEEEE
Confidence            56633 44678999999732 0                                    0123478888889999999998


Q ss_pred             Ee
Q 043411          211 TF  212 (242)
Q Consensus       211 ~~  212 (242)
                      ..
T Consensus       164 ~~  165 (207)
T 1jsx_A          164 LK  165 (207)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.92  E-value=4.6e-05  Score=67.70  Aligned_cols=129  Identities=12%  Similarity=0.141  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhhhccCCCCccEEeeecCCC--CcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCc
Q 043411           33 WPFLEETIKDMFSSSFPGCFNVADLGCSS--GPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLP  110 (242)
Q Consensus        33 ~~~l~~ai~~~~~~~~~~~~~IaDlGCs~--G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~  110 (242)
                      ...+..+++.+..  ....-+|+|+|||.  +.|+..+++.+              .|..+|+.-|.-. .--..     
T Consensus        63 r~fl~rav~~l~~--~~g~~q~LDLGcG~pT~~~~~~la~~~--------------~P~arVv~VD~sp-~mLa~-----  120 (277)
T 3giw_A           63 RDWMNRAVAHLAK--EAGIRQFLDIGTGIPTSPNLHEIAQSV--------------APESRVVYVDNDP-IVLTL-----  120 (277)
T ss_dssp             HHHHHHHHHHHHH--TSCCCEEEEESCCSCCSSCHHHHHHHH--------------CTTCEEEEEECCH-HHHHT-----
T ss_pred             HHHHHHHHHHhcc--ccCCCEEEEeCCCCCcccHHHHHHHHH--------------CCCCEEEEEeCCh-HHHHH-----
Confidence            3444444443321  12357899999998  77887666433              1357788877741 11110     


Q ss_pred             hhHHhhhhcCCCCceeeccccccccc--cC--C--CCcee-----EEEcccceeecccCCCcccCCCCceEEcCCCChHH
Q 043411          111 DFYERIKKDKFGPCFIAGMLGSFYQR--LF--P--SRGIN-----FIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSV  179 (242)
Q Consensus       111 ~~~~~l~~~~~~~~f~~~vpgSFy~~--l~--p--~~svd-----l~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v  179 (242)
                       -+..+...  +..-+..+.+++.+-  ++  |  .+++|     .+++..+||||.+-..                   
T Consensus       121 -Ar~~l~~~--~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~-------------------  178 (277)
T 3giw_A          121 -SQGLLAST--PEGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDD-------------------  178 (277)
T ss_dssp             -THHHHCCC--SSSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGC-------------------
T ss_pred             -HHHHhccC--CCCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhh-------------------
Confidence             01112110  111122233455331  11  1  24455     4789999999876321                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccC
Q 043411          180 CQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRS  216 (242)
Q Consensus       180 ~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~  216 (242)
                                 ....|+.-.+-|+|||+|+++.+..+
T Consensus       179 -----------p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          179 -----------AVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             -----------HHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             -----------HHHHHHHHHHhCCCCcEEEEEeccCC
Confidence                       11267777788999999999998875

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.89  E-value=8.9e-05  Score=60.33  Aligned_cols=119  Identities=16%  Similarity=0.176  Sum_probs=66.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~  128 (242)
                      ...+|+|+|||+|..++.+.+.+           +   |..+++.-|+-. +.-...+      ..+..... .+  +..
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~-----------~---~~~~v~~vD~s~-~~~~~a~------~~~~~~~~~~~--v~~   78 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLV-----------G---ENGRVFGFDIQD-KAIANTT------KKLTDLNLIDR--VTL   78 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHH-----------C---TTCEEEEECSCH-HHHHHHH------HHHHHTTCGGG--EEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHh-----------C---CCCEEEEEECCH-HHHHHHH------HHHHHcCCCCC--eEE
Confidence            34799999999999888776332           1   235777777752 1111111      11111000 11  223


Q ss_pred             ccccccccc-CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          129 MLGSFYQRL-FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       129 vpgSFy~~l-~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      +-+++.+-. ++++++|++++...+     +|..    ...+. .   .+           ++...+|+.-.+-|+|||+
T Consensus        79 ~~~d~~~~~~~~~~~fD~v~~~~~~-----~~~~----~~~~~-~---~~-----------~~~~~~l~~~~~~Lk~gG~  134 (197)
T 3eey_A           79 IKDGHQNMDKYIDCPVKAVMFNLGY-----LPSG----DHSIS-T---RP-----------ETTIQALSKAMELLVTGGI  134 (197)
T ss_dssp             ECSCGGGGGGTCCSCEEEEEEEESB-----CTTS----CTTCB-C---CH-----------HHHHHHHHHHHHHEEEEEE
T ss_pred             EECCHHHHhhhccCCceEEEEcCCc-----ccCc----ccccc-c---Cc-----------ccHHHHHHHHHHhCcCCCE
Confidence            445653332 567899999986544     2321    01111 0   01           2334478888888999999


Q ss_pred             EEEEeccc
Q 043411          208 MFLTFLGR  215 (242)
Q Consensus       208 lvl~~~g~  215 (242)
                      +++..+..
T Consensus       135 l~~~~~~~  142 (197)
T 3eey_A          135 ITVVIYYG  142 (197)
T ss_dssp             EEEEECCB
T ss_pred             EEEEEccC
Confidence            99987644

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.88  E-value=5.7e-05  Score=70.61  Aligned_cols=124  Identities=13%  Similarity=0.072  Sum_probs=74.1

Q ss_pred             CccEEeeecCC------CCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCC
Q 043411           50 GCFNVADLGCS------SGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGP  123 (242)
Q Consensus        50 ~~~~IaDlGCs------~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~  123 (242)
                      ++.+|+|+|||      +|..|+.++...              .|..+|+--|+-.+-   .+  .          ..+-
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~--------------fP~a~V~GVDiSp~m---~~--~----------~~rI  266 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSF--------------FPRGQIYGLDIMDKS---HV--D----------ELRI  266 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHH--------------CTTCEEEEEESSCCG---GG--C----------BTTE
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHh--------------CCCCEEEEEECCHHH---hh--c----------CCCc
Confidence            56899999999      788888776332              034688888886431   10  0          0011


Q ss_pred             ceeeccccccccccCC------CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHH
Q 043411          124 CFIAGMLGSFYQRLFP------SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSL  197 (242)
Q Consensus       124 ~f~~~vpgSFy~~l~p------~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~  197 (242)
                      .|+   -++..+--|+      .+++|+|+|..+ ||.                                 .|+..+|+.
T Consensus       267 ~fv---~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~---------------------------------~d~~~aL~e  309 (419)
T 3sso_A          267 RTI---QGDQNDAEFLDRIARRYGPFDIVIDDGS-HIN---------------------------------AHVRTSFAA  309 (419)
T ss_dssp             EEE---ECCTTCHHHHHHHHHHHCCEEEEEECSC-CCH---------------------------------HHHHHHHHH
T ss_pred             EEE---EecccccchhhhhhcccCCccEEEECCc-ccc---------------------------------hhHHHHHHH
Confidence            232   2355333344      689999999654 542                                 234457888


Q ss_pred             HHhhhccCceEEEEecccCCCCCC---C---ChhhHHHHHHHHHHHHH
Q 043411          198 RSEEIVSGGRMFLTFLGRSIADPS---S---KDCCCLWELLTKSLIQL  239 (242)
Q Consensus       198 Ra~EL~pGG~lvl~~~g~~~~~~~---~---~~~~~~~~~l~~~l~dm  239 (242)
                      -.+-|+|||++++.-+-.......   .   .....+.+.++..+.++
T Consensus       310 l~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l  357 (419)
T 3sso_A          310 LFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAI  357 (419)
T ss_dssp             HGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHH
T ss_pred             HHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHh
Confidence            889999999999987753221111   0   11223556666666554

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.88  E-value=1.8e-05  Score=64.49  Aligned_cols=111  Identities=13%  Similarity=0.038  Sum_probs=64.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+++        +        +..+|+.-|+-. +.-...+      .........+  +..+
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~--------~--------~~~~v~~vD~~~-~~~~~a~------~~~~~~~~~~--v~~~   98 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALS--------R--------GAASVLFVESDQ-RSAAVIA------RNIEALGLSG--ATLR   98 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHH--------T--------TCSEEEEEECCH-HHHHHHH------HHHHHHTCSC--EEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHH--------C--------CCCeEEEEECCH-HHHHHHH------HHHHHcCCCc--eEEE
Confidence            357999999999999886542        1        124677777652 1111111      1111111112  1223


Q ss_pred             cccccccc--CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHh--hhccC
Q 043411          130 LGSFYQRL--FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSE--EIVSG  205 (242)
Q Consensus       130 pgSFy~~l--~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~--EL~pG  205 (242)
                      -+++.+-+  ++++++|++++....||.                                ..++..+|+.-.+  -|+||
T Consensus        99 ~~d~~~~~~~~~~~~fD~i~~~~p~~~~--------------------------------~~~~~~~l~~~~~~~~L~pg  146 (189)
T 3p9n_A           99 RGAVAAVVAAGTTSPVDLVLADPPYNVD--------------------------------SADVDAILAALGTNGWTREG  146 (189)
T ss_dssp             ESCHHHHHHHCCSSCCSEEEECCCTTSC--------------------------------HHHHHHHHHHHHHSSSCCTT
T ss_pred             EccHHHHHhhccCCCccEEEECCCCCcc--------------------------------hhhHHHHHHHHHhcCccCCC
Confidence            44654332  457899999996555541                                1244456666666  89999


Q ss_pred             ceEEEEecccCC
Q 043411          206 GRMFLTFLGRSI  217 (242)
Q Consensus       206 G~lvl~~~g~~~  217 (242)
                      |++++....+..
T Consensus       147 G~l~~~~~~~~~  158 (189)
T 3p9n_A          147 TVAVVERATTCA  158 (189)
T ss_dssp             CEEEEEEETTSC
T ss_pred             eEEEEEecCCCC
Confidence            999998876654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.87  E-value=2.4e-05  Score=64.36  Aligned_cols=80  Identities=14%  Similarity=0.047  Sum_probs=47.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+.                 ..+|+.-|.-. +.-...      +..+......+  +..+
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~-----------------~~~v~~vD~~~-~~~~~a------~~~~~~~~~~~--v~~~  130 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHL-----------------VQHVCSVERIK-GLQWQA------RRRLKNLDLHN--VSTR  130 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH-----------------SSEEEEEESCH-HHHHHH------HHHHHHTTCCS--EEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh-----------------CCEEEEEecCH-HHHHHH------HHHHHHcCCCc--eEEE
Confidence            4679999999999998876522                 13555555541 111111      11111111122  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeec
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWL  155 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWL  155 (242)
                      .++..+.+.+.+++|++++..++||+
T Consensus       131 ~~d~~~~~~~~~~~D~i~~~~~~~~~  156 (210)
T 3lbf_A          131 HGDGWQGWQARAPFDAIIVTAAPPEI  156 (210)
T ss_dssp             ESCGGGCCGGGCCEEEEEESSBCSSC
T ss_pred             ECCcccCCccCCCccEEEEccchhhh
Confidence            45776666677899999999888874

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.86  E-value=7.2e-05  Score=62.99  Aligned_cols=20  Identities=25%  Similarity=0.237  Sum_probs=17.3

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..++.+.
T Consensus        74 ~~~~VLDlGcG~G~~~~~la   93 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVA   93 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHH
T ss_pred             CCCEEEEEcccCCHHHHHHH
Confidence            45799999999999988776

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.85  E-value=3.7e-05  Score=70.95  Aligned_cols=137  Identities=12%  Similarity=0.167  Sum_probs=72.5

Q ss_pred             chHHHhhHHHHHHHHHH-HHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEe
Q 043411           16 TSYAKNSNIQRTVMSKA-WPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFL   94 (242)
Q Consensus        16 ~sY~~nS~~Q~~~~~~~-~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~   94 (242)
                      .||+..+..+..+-... ...-++||...... . +--+|+|+|||+|..|+..++        .    |    --.|+-
T Consensus        50 ~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~-~-~~k~VLDvG~GtGiLs~~Aa~--------a----G----A~~V~a  111 (376)
T 4hc4_A           50 ECYSDVSVHEEMIADRVRTDAYRLGILRNWAA-L-RGKTVLDVGAGTGILSIFCAQ--------A----G----ARRVYA  111 (376)
T ss_dssp             CCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHH-H-TTCEEEEETCTTSHHHHHHHH--------T----T----CSEEEE
T ss_pred             hhccCcHHHHHHhCCHHHHHHHHHHHHhCHHh-c-CCCEEEEeCCCccHHHHHHHH--------h----C----CCEEEE
Confidence            47887766554443332 12234444321100 1 235799999999988776541        1    2    145666


Q ss_pred             cCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCC
Q 043411           95 NDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKS  174 (242)
Q Consensus        95 nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~  174 (242)
                      -|..  +.-...+.+.      ..+.... -+..+.|.. +.+-.++.+|+++|    -|+...-..    +        
T Consensus       112 ve~s--~~~~~a~~~~------~~n~~~~-~i~~i~~~~-~~~~lpe~~Dvivs----E~~~~~l~~----e--------  165 (376)
T 4hc4_A          112 VEAS--AIWQQAREVV------RFNGLED-RVHVLPGPV-ETVELPEQVDAIVS----EWMGYGLLH----E--------  165 (376)
T ss_dssp             EECS--TTHHHHHHHH------HHTTCTT-TEEEEESCT-TTCCCSSCEEEEEC----CCCBTTBTT----T--------
T ss_pred             EeCh--HHHHHHHHHH------HHcCCCc-eEEEEeeee-eeecCCccccEEEe----ecccccccc----c--------
Confidence            6743  3222222211      1111111 122344555 45556688999999    343322110    0        


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          175 SPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       175 s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                                    ..+..+|.+|.+-|+|||+++-
T Consensus       166 --------------~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          166 --------------SMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             --------------CSHHHHHHHHHHHEEEEEEEES
T ss_pred             --------------chhhhHHHHHHhhCCCCceECC
Confidence                          1234489999999999999874

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.85  E-value=7.8e-05  Score=66.56  Aligned_cols=97  Identities=18%  Similarity=0.096  Sum_probs=57.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..|..+++        +        ..-+|+--|+-.+--..-.+.-            +.+-... 
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~--------~--------ga~~V~aVDvs~~mL~~a~r~~------------~rv~~~~-  135 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQ--------N--------GAKLVYAVDVGTNQLVWKLRQD------------DRVRSME-  135 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--------T--------TCSEEEEECSSSSCSCHHHHTC------------TTEEEEC-
T ss_pred             cccEEEecCCCccHHHHHHHh--------C--------CCCEEEEEECCHHHHHHHHHhC------------cccceec-
Confidence            456999999999999987652        1        1257888888643211101100            1110000 


Q ss_pred             cccc--c-cccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          130 LGSF--Y-QRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       130 pgSF--y-~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      ...+  . ..-+|..++|++++..++|||..                                    +|..-++-|+|||
T Consensus       136 ~~ni~~l~~~~l~~~~fD~v~~d~sf~sl~~------------------------------------vL~e~~rvLkpGG  179 (291)
T 3hp7_A          136 QYNFRYAEPVDFTEGLPSFASIDVSFISLNL------------------------------------ILPALAKILVDGG  179 (291)
T ss_dssp             SCCGGGCCGGGCTTCCCSEEEECCSSSCGGG------------------------------------THHHHHHHSCTTC
T ss_pred             ccCceecchhhCCCCCCCEEEEEeeHhhHHH------------------------------------HHHHHHHHcCcCC
Confidence            0011  0 11246667999999999888622                                    4555556679999


Q ss_pred             eEEEE
Q 043411          207 RMFLT  211 (242)
Q Consensus       207 ~lvl~  211 (242)
                      +|++.
T Consensus       180 ~lv~l  184 (291)
T 3hp7_A          180 QVVAL  184 (291)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.82  E-value=1.4e-05  Score=67.78  Aligned_cols=85  Identities=12%  Similarity=-0.007  Sum_probs=52.9

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCC-Cceee
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFG-PCFIA  127 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~-~~f~~  127 (242)
                      +.+-+|+|+|||+|+.++.++.               ..|..+++-.|.-     .-.-.+.  +..+...... ++-+ 
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~---------------~~p~a~~~A~Di~-----~~~leia--r~~~~~~g~~~~v~~-  104 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWN---------------ENEKIIYHAYDID-----RAEIAFL--SSIIGKLKTTIKYRF-  104 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHC---------------SSCCCEEEEECSC-----HHHHHHH--HHHHHHSCCSSEEEE-
T ss_pred             CCCCeEEEecCCCCHHHHHHHh---------------cCCCCEEEEEeCC-----HHHHHHH--HHHHHhcCCCccEEE-
Confidence            4578999999999999998761               2245677777765     2211111  1111111112 2222 


Q ss_pred             ccccccccccCCCCceeEEEcccceeecccCCC
Q 043411          128 GMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPE  160 (242)
Q Consensus       128 ~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~  160 (242)
                         .+.-.. .|++++|++.+...+|-|.+.+.
T Consensus       105 ---~d~~~~-~~~~~~DvVLa~k~LHlL~~~~~  133 (200)
T 3fzg_A          105 ---LNKESD-VYKGTYDVVFLLKMLPVLKQQDV  133 (200)
T ss_dssp             ---ECCHHH-HTTSEEEEEEEETCHHHHHHTTC
T ss_pred             ---eccccc-CCCCCcChhhHhhHHHhhhhhHH
Confidence               244333 68899999999999999955444

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.82  E-value=6e-05  Score=62.90  Aligned_cols=78  Identities=13%  Similarity=0.030  Sum_probs=44.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..                 .+++.-|... +.-...      +......  ++  +..+
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~~~~-----------------~~v~~vD~~~-~~~~~a------~~~~~~~--~~--v~~~  121 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIAEIV-----------------DKVVSVEINE-KMYNYA------SKLLSYY--NN--IKLI  121 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS-----------------SEEEEEESCH-HHHHHH------HHHHTTC--SS--EEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHc-----------------CEEEEEeCCH-HHHHHH------HHHHhhc--CC--eEEE
Confidence            35799999999999988765221                 2445555431 111111      1111110  11  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeec
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWL  155 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWL  155 (242)
                      .+++.+.+.+.+++|++++..++|++
T Consensus       122 ~~d~~~~~~~~~~fD~v~~~~~~~~~  147 (231)
T 1vbf_A          122 LGDGTLGYEEEKPYDRVVVWATAPTL  147 (231)
T ss_dssp             ESCGGGCCGGGCCEEEEEESSBBSSC
T ss_pred             ECCcccccccCCCccEEEECCcHHHH
Confidence            45665544457899999999888874

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.81  E-value=3.6e-05  Score=61.81  Aligned_cols=44  Identities=16%  Similarity=0.107  Sum_probs=35.0

Q ss_pred             CCCCceeEEEcccceeec-ccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecc
Q 043411          138 FPSRGINFIHSSYSVHWL-SKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       138 ~p~~svdl~~Ss~alhWL-s~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                      ++++++|+++|+.++||+ .+.+                                 .+|+.-++-|+|||++++....
T Consensus        59 ~~~~~fD~V~~~~~l~~~~~~~~---------------------------------~~l~~~~r~LkpgG~l~~~~~~  103 (176)
T 2ld4_A           59 HKESSFDIILSGLVPGSTTLHSA---------------------------------EILAEIARILRPGGCLFLKEPV  103 (176)
T ss_dssp             CCSSCEEEEEECCSTTCCCCCCH---------------------------------HHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCCCEeEEEECChhhhcccCHH---------------------------------HHHHHHHHHCCCCEEEEEEccc
Confidence            378899999999999997 3321                                 2777888889999999996553

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.81  E-value=3.6e-05  Score=63.84  Aligned_cols=115  Identities=14%  Similarity=0.045  Sum_probs=61.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..               |..+|+--|+...=...+.+....   ........++  ..+
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~---------------p~~~v~gvD~s~~~l~~~~~~a~~---~~~~~~~~~v--~~~   86 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQN---------------PSRLVVALDADKSRMEKISAKAAA---KPAKGGLPNL--LYL   86 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHC---------------TTEEEEEEESCGGGGHHHHHHHTS---CGGGTCCTTE--EEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHC---------------CCCEEEEEECCHHHHHHHHHHHHH---hhhhcCCCce--EEE
Confidence            46899999999999988776211               357888888863211111111000   0000111121  223


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      -+++.+--+++++ |.++  ..+.|......                          ...|...+|+.-++-|+|||+++
T Consensus        87 ~~d~~~l~~~~~~-d~v~--~~~~~~~~~~~--------------------------~~~~~~~~l~~~~~~LkpgG~l~  137 (218)
T 3mq2_A           87 WATAERLPPLSGV-GELH--VLMPWGSLLRG--------------------------VLGSSPEMLRGMAAVCRPGASFL  137 (218)
T ss_dssp             ECCSTTCCSCCCE-EEEE--EESCCHHHHHH--------------------------HHTSSSHHHHHHHHTEEEEEEEE
T ss_pred             ecchhhCCCCCCC-CEEE--EEccchhhhhh--------------------------hhccHHHHHHHHHHHcCCCcEEE
Confidence            4466554456666 7666  23334221100                          00111237888888899999999


Q ss_pred             EEec
Q 043411          210 LTFL  213 (242)
Q Consensus       210 l~~~  213 (242)
                      +++-
T Consensus       138 ~~~~  141 (218)
T 3mq2_A          138 VALN  141 (218)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9764

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=97.79  E-value=8e-05  Score=62.51  Aligned_cols=20  Identities=30%  Similarity=0.313  Sum_probs=17.0

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..|..+.
T Consensus        57 ~g~~VLDlGcGtG~~~~~la   76 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLA   76 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHH
T ss_pred             CCCEEEEECCcCCHHHHHHH
Confidence            45799999999999888765

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.79  E-value=9.4e-05  Score=61.02  Aligned_cols=83  Identities=11%  Similarity=0.082  Sum_probs=46.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+....           +   |..+++.-|... +.-...+      ..+......+  +..+
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~-----------~---~~~~v~~vD~~~-~~~~~a~------~~~~~~~~~~--v~~~  133 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIV-----------G---EDGLVVSIERIP-ELAEKAE------RTLRKLGYDN--VIVI  133 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH-----------C---TTSEEEEEESCH-HHHHHHH------HHHHHHTCTT--EEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHh-----------C---CCCEEEEEeCCH-HHHHHHH------HHHHHcCCCC--eEEE
Confidence            35799999999999988776322           1   225666666642 1111111      1111111122  2223


Q ss_pred             ccccccccCCCCceeEEEcccceeec
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWL  155 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWL  155 (242)
                      .+++...+.+.+++|++++..++|++
T Consensus       134 ~~d~~~~~~~~~~fD~v~~~~~~~~~  159 (215)
T 2yxe_A          134 VGDGTLGYEPLAPYDRIYTTAAGPKI  159 (215)
T ss_dssp             ESCGGGCCGGGCCEEEEEESSBBSSC
T ss_pred             ECCcccCCCCCCCeeEEEECCchHHH
Confidence            44554333336789999999998874

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.78  E-value=4.8e-05  Score=68.16  Aligned_cols=105  Identities=20%  Similarity=0.269  Sum_probs=61.6

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..++.+.+        .        +..+|+.-|+.  +.-...+..      .......+ -+..+.
T Consensus        39 ~~~VLDiGcGtG~ls~~la~--------~--------g~~~v~~vD~s--~~~~~a~~~------~~~~~~~~-~i~~~~   93 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAK--------H--------GAKHVIGVDMS--SIIEMAKEL------VELNGFSD-KITLLR   93 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHH--------T--------CCSEEEEEESS--THHHHHHHH------HHHTTCTT-TEEEEE
T ss_pred             CCEEEEecCccHHHHHHHHH--------C--------CCCEEEEEChH--HHHHHHHHH------HHHcCCCC-CEEEEE
Confidence            46999999999998876541        1        12478888875  333322211      11111111 112244


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      +++.+--+|.+++|+++|....+.+...                              .++..+|..+.+-|+|||+++.
T Consensus        94 ~d~~~~~~~~~~~D~Ivs~~~~~~l~~~------------------------------~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1           94 GKLEDVHLPFPKVDIIISEWMGYFLLYE------------------------------SMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             SCTTTSCCSSSCEEEEEECCCBTTBSTT------------------------------CCHHHHHHHHHHHEEEEEEEES
T ss_pred             CchhhccCCCCcccEEEEeCchhhcccH------------------------------HHHHHHHHHHHhhcCCCeEEEE
Confidence            5664444677899999996433322111                              1223488888899999999973

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.78  E-value=3.3e-05  Score=65.55  Aligned_cols=101  Identities=11%  Similarity=0.028  Sum_probs=60.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+...              . +..+|+.-|... +.-...+.      ........+  +..+
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~--------------~-~~~~v~~vD~s~-~~~~~a~~------~~~~~~~~~--v~~~  125 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKIC--------------F-PHLHVTIVDSLN-KRITFLEK------LSEALQLEN--TTFC  125 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHH--------------C-TTCEEEEEESCH-HHHHHHHH------HHHHHTCSS--EEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHh--------------C-CCCEEEEEeCCH-HHHHHHHH------HHHHcCCCC--EEEE
Confidence            4579999999999998877521              0 246777777751 11111111      111111122  2334


Q ss_pred             ccccccccCC---CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          130 LGSFYQRLFP---SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       130 pgSFy~~l~p---~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      .+++.+-.++   ++++|+++|..   +                                  .|+..+++.-.+-|+|||
T Consensus       126 ~~d~~~~~~~~~~~~~fD~V~~~~---~----------------------------------~~~~~~l~~~~~~LkpgG  168 (240)
T 1xdz_A          126 HDRAETFGQRKDVRESYDIVTARA---V----------------------------------ARLSVLSELCLPLVKKNG  168 (240)
T ss_dssp             ESCHHHHTTCTTTTTCEEEEEEEC---C----------------------------------SCHHHHHHHHGGGEEEEE
T ss_pred             eccHHHhcccccccCCccEEEEec---c----------------------------------CCHHHHHHHHHHhcCCCC
Confidence            4566443332   67999999833   0                                  023348888888999999


Q ss_pred             eEEEE
Q 043411          207 RMFLT  211 (242)
Q Consensus       207 ~lvl~  211 (242)
                      ++++.
T Consensus       169 ~l~~~  173 (240)
T 1xdz_A          169 LFVAL  173 (240)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99885

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.78  E-value=1.2e-05  Score=68.93  Aligned_cols=120  Identities=11%  Similarity=0.124  Sum_probs=61.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcC-chhHHhhhhcCCCCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESL-PDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l-~~~~~~l~~~~~~~~f~~~  128 (242)
                      +..+|+|+|||+|..++.+...               .|...++--|+-. +.-...+.. ...+ ........++-  .
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~---------------~p~~~v~GiDis~-~~l~~A~~~~~~l~-~~~~~~~~nv~--~  106 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPL---------------FPDTLILGLEIRV-KVSDYVQDRIRALR-AAPAGGFQNIA--C  106 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGG---------------STTSEEEEEESCH-HHHHHHHHHHHHHH-HSTTCCCTTEE--E
T ss_pred             CCCeEEEEccCCcHHHHHHHHH---------------CCCCeEEEEECCH-HHHHHHHHHHHHHH-HHHhcCCCeEE--E
Confidence            4689999999999988876521               1346677667642 111111100 0000 00001112322  2


Q ss_pred             cccccc---cccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          129 MLGSFY---QRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       129 vpgSFy---~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      +-++..   ...++++++|.++..+.-.|..+.-     .|.++                    ....||+.-++-|+||
T Consensus       107 ~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h-----~krr~--------------------~~~~~l~~~~~~LkpG  161 (235)
T 3ckk_A          107 LRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTK-----HKWRI--------------------ISPTLLAEYAYVLRVG  161 (235)
T ss_dssp             EECCTTTCHHHHCCTTCEEEEEEESCC----------------C--------------------CCHHHHHHHHHHEEEE
T ss_pred             EECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhh-----hhhhh--------------------hhHHHHHHHHHHCCCC
Confidence            233432   3347899999999876666632100     00000                    0123777778889999


Q ss_pred             ceEEEEec
Q 043411          206 GRMFLTFL  213 (242)
Q Consensus       206 G~lvl~~~  213 (242)
                      |.|++.+-
T Consensus       162 G~l~~~td  169 (235)
T 3ckk_A          162 GLVYTITD  169 (235)
T ss_dssp             EEEEEEES
T ss_pred             CEEEEEeC
Confidence            99999764

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.77  E-value=0.00027  Score=61.09  Aligned_cols=126  Identities=15%  Similarity=0.164  Sum_probs=70.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+....               |..+++..|... +.-.+.+.      ........+  +..+
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~---------------~~~~v~~vD~s~-~~l~~a~~------n~~~~~~~~--v~~~  164 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASER---------------PDCEIIAVDRMP-DAVSLAQR------NAQHLAIKN--IHIL  164 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHC---------------TTSEEEEECSSH-HHHHHHHH------HHHHHTCCS--EEEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhC---------------CCCEEEEEECCH-HHHHHHHH------HHHHcCCCc--eEEE
Confidence            35699999999999888765221               346788888752 11111111      111111112  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeeccc--CCCcccCC--CCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSK--VPENLENN--KRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~--~P~~~~~n--kg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      .+++.+ .++++++|+++|.-..+|...  ++..+...  ...++  +          ......++..+++.-.+-|+||
T Consensus       165 ~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~--~----------~~~g~~~~~~~l~~~~~~Lkpg  231 (276)
T 2b3t_A          165 QSDWFS-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALV--A----------ADSGMADIVHIIEQSRNALVSG  231 (276)
T ss_dssp             CCSTTG-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTB--C----------HHHHTHHHHHHHHHHGGGEEEE
T ss_pred             Ecchhh-hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHc--C----------CCcHHHHHHHHHHHHHHhcCCC
Confidence            556655 356789999999866666433  00011000  00000  0          1122345677998889999999


Q ss_pred             ceEEEEe
Q 043411          206 GRMFLTF  212 (242)
Q Consensus       206 G~lvl~~  212 (242)
                      |++++..
T Consensus       232 G~l~~~~  238 (276)
T 2b3t_A          232 GFLLLEH  238 (276)
T ss_dssp             EEEEEEC
T ss_pred             CEEEEEE
Confidence            9999963

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.73  E-value=3.6e-05  Score=72.27  Aligned_cols=116  Identities=16%  Similarity=0.067  Sum_probs=62.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCc-hhHHhhhhcCCCCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLP-DFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~-~~~~~l~~~~~~~~f~~~  128 (242)
                      ...+|+|+|||+|..++.+....               +.-+++--|+.. +.-.+.+... .++..........--+..
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~~---------------g~~kVvGIDiS~-~~lelAr~n~e~frkr~~~~Gl~~~rVef  236 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAAT---------------NCKHHYGVEKAD-IPAKYAETMDREFRKWMKWYGKKHAEYTL  236 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHC---------------CCSEEEEEECCH-HHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHC---------------CCCEEEEEeCCH-HHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence            45799999999999988765211               112455555542 1122222110 011000000000011334


Q ss_pred             cccccccccCCC--CceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          129 MLGSFYQRLFPS--RGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       129 vpgSFy~~l~p~--~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      +-|+|.+.-++.  .++|++++...++|    |                              |...-|....+.|+|||
T Consensus       237 i~GD~~~lp~~d~~~~aDVVf~Nn~~F~----p------------------------------dl~~aL~Ei~RvLKPGG  282 (438)
T 3uwp_A          237 ERGDFLSEEWRERIANTSVIFVNNFAFG----P------------------------------EVDHQLKERFANMKEGG  282 (438)
T ss_dssp             EECCTTSHHHHHHHHTCSEEEECCTTCC----H------------------------------HHHHHHHHHHTTSCTTC
T ss_pred             EECcccCCccccccCCccEEEEcccccC----c------------------------------hHHHHHHHHHHcCCCCc
Confidence            556776654443  47899998766655    1                              23335566678999999


Q ss_pred             eEEEEeccc
Q 043411          207 RMFLTFLGR  215 (242)
Q Consensus       207 ~lvl~~~g~  215 (242)
                      +++++-.-.
T Consensus       283 rIVssE~f~  291 (438)
T 3uwp_A          283 RIVSSKPFA  291 (438)
T ss_dssp             EEEESSCSS
T ss_pred             EEEEeeccc
Confidence            999885433

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=97.72  E-value=7.8e-05  Score=62.50  Aligned_cols=20  Identities=25%  Similarity=0.443  Sum_probs=16.9

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..+..+.
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~   67 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFG   67 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHG
T ss_pred             CCCeEEEeCCCCCHHHHHHH
Confidence            45799999999999887665

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.72  E-value=0.00019  Score=61.09  Aligned_cols=36  Identities=22%  Similarity=0.110  Sum_probs=25.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      ...+|+|+|||+|..++.+...+      +.       +..+|+-.|+-
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~------~~-------~~~~v~gvDis   86 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLH------RR-------SLRQVIASDVD   86 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHT------GG-------GEEEEEEEESC
T ss_pred             CCCeEEECCCCCCHHHHHHHHHh------cc-------CCCeEEEEECC
Confidence            46899999999998877665332      00       24678888874

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.70  E-value=4.8e-05  Score=63.42  Aligned_cols=86  Identities=21%  Similarity=0.089  Sum_probs=46.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcC-----CCCc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDK-----FGPC  124 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~-----~~~~  124 (242)
                      ...+|+|+|||+|..+..+.+..    ..      ...|..+|+--|.-. +.-...+      ..+....     ..++
T Consensus        80 ~~~~VLdiG~G~G~~~~~la~~~----~~------~~~~~~~v~~vD~~~-~~~~~a~------~~~~~~~~~~~~~~~v  142 (227)
T 2pbf_A           80 PGSRAIDVGSGSGYLTVCMAIKM----NV------LENKNSYVIGLERVK-DLVNFSL------ENIKRDKPELLKIDNF  142 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHT----TT------TTCTTCEEEEEESCH-HHHHHHH------HHHHHHCGGGGSSTTE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHh----cc------cCCCCCEEEEEeCCH-HHHHHHH------HHHHHcCccccccCCE
Confidence            35799999999999888765322    00      011345777777642 1111111      1111111     1121


Q ss_pred             eeecccccccccc----CCCCceeEEEcccceee
Q 043411          125 FIAGMLGSFYQRL----FPSRGINFIHSSYSVHW  154 (242)
Q Consensus       125 f~~~vpgSFy~~l----~p~~svdl~~Ss~alhW  154 (242)
                        ..+.++..+-.    ++.+++|++++..++|+
T Consensus       143 --~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~  174 (227)
T 2pbf_A          143 --KIIHKNIYQVNEEEKKELGLFDAIHVGASASE  174 (227)
T ss_dssp             --EEEECCGGGCCHHHHHHHCCEEEEEECSBBSS
T ss_pred             --EEEECChHhcccccCccCCCcCEEEECCchHH
Confidence              22344655444    45678999999888775

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.70  E-value=0.0002  Score=60.95  Aligned_cols=25  Identities=16%  Similarity=0.174  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHhhhccCceEEEEec
Q 043411          189 RDFSAFLSLRSEEIVSGGRMFLTFL  213 (242)
Q Consensus       189 ~D~~~FL~~Ra~EL~pGG~lvl~~~  213 (242)
                      .|...||+.-++=|||||+|++...
T Consensus       147 ~~~~~~~~e~~rvLkPGG~l~f~~~  171 (236)
T 3orh_A          147 HQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             HHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             cchhhhhhhhhheeCCCCEEEEEec
Confidence            3555688888888999999987543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.68  E-value=0.00012  Score=61.24  Aligned_cols=91  Identities=13%  Similarity=0.006  Sum_probs=45.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+.. .   ..    + ..+..+|+.-|.-. +.-...+.... ...+......++  ..+
T Consensus        84 ~~~~VLdiG~G~G~~~~~la~~~-~---~~----~-~~~~~~v~~vD~~~-~~~~~a~~~~~-~~~~~~~~~~~v--~~~  150 (227)
T 1r18_A           84 PGARILDVGSGSGYLTACFYRYI-K---AK----G-VDADTRIVGIEHQA-ELVRRSKANLN-TDDRSMLDSGQL--LIV  150 (227)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-H---HS----C-CCTTCEEEEEESCH-HHHHHHHHHHH-HHHHHHHHHTSE--EEE
T ss_pred             CCCEEEEECCCccHHHHHHHHhc-c---cc----c-CCccCEEEEEEcCH-HHHHHHHHHHH-hcCccccCCCce--EEE
Confidence            35799999999999998776332 1   10    0 01124677777642 11111111100 000000000121  123


Q ss_pred             ccccccccCCC-CceeEEEcccceee
Q 043411          130 LGSFYQRLFPS-RGINFIHSSYSVHW  154 (242)
Q Consensus       130 pgSFy~~l~p~-~svdl~~Ss~alhW  154 (242)
                      .++... .+|+ +++|++++..++||
T Consensus       151 ~~d~~~-~~~~~~~fD~I~~~~~~~~  175 (227)
T 1r18_A          151 EGDGRK-GYPPNAPYNAIHVGAAAPD  175 (227)
T ss_dssp             ESCGGG-CCGGGCSEEEEEECSCBSS
T ss_pred             ECCccc-CCCcCCCccEEEECCchHH
Confidence            345544 3444 78999999888876

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.68  E-value=0.00011  Score=61.25  Aligned_cols=104  Identities=16%  Similarity=0.097  Sum_probs=58.7

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcC-----CCCc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDK-----FGPC  124 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~-----~~~~  124 (242)
                      ...+|+|+|||+|..|..+.+..           +   +..+|+..|+.. +.-...+      .......     ..++
T Consensus        77 ~~~~vLDiG~G~G~~~~~la~~~-----------~---~~~~v~~vD~s~-~~~~~a~------~~~~~~~~~~~~~~~v  135 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACFARMV-----------G---CTGKVIGIDHIK-ELVDDSV------NNVRKDDPTLLSSGRV  135 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-----------C---TTCEEEEEESCH-HHHHHHH------HHHHHHCTHHHHTSSE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHHh-----------C---CCcEEEEEeCCH-HHHHHHH------HHHHhhcccccCCCcE
Confidence            45799999999999988776322           1   235677777642 1111111      1110000     1121


Q ss_pred             eeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043411          125 FIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVS  204 (242)
Q Consensus       125 f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~p  204 (242)
                        ..+-++......+.+++|++++...++.                                       +++.-.+-|+|
T Consensus       136 --~~~~~d~~~~~~~~~~fD~i~~~~~~~~---------------------------------------~~~~~~~~Lkp  174 (226)
T 1i1n_A          136 --QLVVGDGRMGYAEEAPYDAIHVGAAAPV---------------------------------------VPQALIDQLKP  174 (226)
T ss_dssp             --EEEESCGGGCCGGGCCEEEEEECSBBSS---------------------------------------CCHHHHHTEEE
T ss_pred             --EEEECCcccCcccCCCcCEEEECCchHH---------------------------------------HHHHHHHhcCC
Confidence              1233355433345678999988665532                                       22233456899


Q ss_pred             CceEEEEeccc
Q 043411          205 GGRMFLTFLGR  215 (242)
Q Consensus       205 GG~lvl~~~g~  215 (242)
                      ||+|++++...
T Consensus       175 gG~lv~~~~~~  185 (226)
T 1i1n_A          175 GGRLILPVGPA  185 (226)
T ss_dssp             EEEEEEEESCT
T ss_pred             CcEEEEEEecC
Confidence            99999987643

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.67  E-value=0.00015  Score=61.18  Aligned_cols=80  Identities=15%  Similarity=0.225  Sum_probs=42.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+..               + .+|+.-|... +.-...      +..+......+  +..+
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~~---------------~-~~v~~vD~~~-~~~~~a------~~~~~~~~~~~--v~~~  145 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEIV---------------K-TDVYTIERIP-ELVEFA------KRNLERAGVKN--VHVI  145 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHH---------------C-SCEEEEESCH-HHHHHH------HHHHHHTTCCS--EEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHh---------------C-CEEEEEeCCH-HHHHHH------HHHHHHcCCCC--cEEE
Confidence            34699999999999988776322               1 3455555431 111111      11111111122  2234


Q ss_pred             ccccccccCCCC-ceeEEEcccceeec
Q 043411          130 LGSFYQRLFPSR-GINFIHSSYSVHWL  155 (242)
Q Consensus       130 pgSFy~~l~p~~-svdl~~Ss~alhWL  155 (242)
                      .+++ ..-+|+. .+|++++..+++++
T Consensus       146 ~~d~-~~~~~~~~~fD~Ii~~~~~~~~  171 (235)
T 1jg1_A          146 LGDG-SKGFPPKAPYDVIIVTAGAPKI  171 (235)
T ss_dssp             ESCG-GGCCGGGCCEEEEEECSBBSSC
T ss_pred             ECCc-ccCCCCCCCccEEEECCcHHHH
Confidence            4565 3334444 49999998887763

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.67  E-value=0.00018  Score=57.30  Aligned_cols=102  Identities=19%  Similarity=0.204  Sum_probs=57.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~  128 (242)
                      ...+|+|+|||+|..++.+...                - .+++..|... +.-...+      ..+..... .++  ..
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~~----------------~-~~v~~~D~~~-~~~~~a~------~~~~~~~~~~~~--~~   86 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAGR----------------V-RRVYAIDRNP-EAISTTE------MNLQRHGLGDNV--TL   86 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTT----------------S-SEEEEEESCH-HHHHHHH------HHHHHTTCCTTE--EE
T ss_pred             CCCEEEEECCCCCHHHHHHHHh----------------c-CEEEEEECCH-HHHHHHH------HHHHHcCCCcce--EE
Confidence            4579999999999988766511                1 3555566531 1111111      11111111 121  12


Q ss_pred             cccccccccCCC-CceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          129 MLGSFYQRLFPS-RGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       129 vpgSFy~~l~p~-~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      +.+++.+ .+|. +++|++++...+|+                                    +..+|+.-.+-|+|||+
T Consensus        87 ~~~d~~~-~~~~~~~~D~v~~~~~~~~------------------------------------~~~~l~~~~~~l~~gG~  129 (192)
T 1l3i_A           87 MEGDAPE-ALCKIPDIDIAVVGGSGGE------------------------------------LQEILRIIKDKLKPGGR  129 (192)
T ss_dssp             EESCHHH-HHTTSCCEEEEEESCCTTC------------------------------------HHHHHHHHHHTEEEEEE
T ss_pred             EecCHHH-hcccCCCCCEEEECCchHH------------------------------------HHHHHHHHHHhcCCCcE
Confidence            3345544 3343 68999998654432                                    12377777888999999


Q ss_pred             EEEEecc
Q 043411          208 MFLTFLG  214 (242)
Q Consensus       208 lvl~~~g  214 (242)
                      +++....
T Consensus       130 l~~~~~~  136 (192)
T 1l3i_A          130 IIVTAIL  136 (192)
T ss_dssp             EEEEECB
T ss_pred             EEEEecC
Confidence            9998764

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.64  E-value=9.3e-05  Score=63.96  Aligned_cols=127  Identities=17%  Similarity=0.193  Sum_probs=64.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ...+|+|+|||+|..++.+.+..               |..+|+.-|+-. +.-.+.+. +....    ...... -+..
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~---------------~~~~v~gvDi~~-~~~~~a~~n~~~~~----~~~l~~-~v~~   94 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARL---------------EKAEVTLYERSQ-EMAEFARRSLELPD----NAAFSA-RIEV   94 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHC---------------TTEEEEEEESSH-HHHHHHHHHTTSGG----GTTTGG-GEEE
T ss_pred             CCCEEEEeCChHhHHHHHHHHhC---------------CCCeEEEEECCH-HHHHHHHHHHHhhh----hCCCcc-eEEE
Confidence            45799999999999888776321               246777777742 11111111 10000    000000 1223


Q ss_pred             cccccccc-------cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHH-HHHHHHHHHHHHHHh
Q 043411          129 MLGSFYQR-------LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWE-QFQRDFSAFLSLRSE  200 (242)
Q Consensus       129 vpgSFy~~-------l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~-q~~~D~~~FL~~Ra~  200 (242)
                      +.+++.+-       .++++++|+|++.--.++.....               + +....+.+. ....++..||+.-.+
T Consensus        95 ~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~---------------~-~~~~~~~a~~~~~~~~~~~l~~~~~  158 (260)
T 2ozv_A           95 LEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRR---------------T-PDALKAEAHAMTEGLFEDWIRTASA  158 (260)
T ss_dssp             EECCTTCCHHHHHHTTCCTTCEEEEEECCCC-------------------------------------CCHHHHHHHHHH
T ss_pred             EeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCC---------------C-cCHHHHHHhhcCcCCHHHHHHHHHH
Confidence            44465432       36788999999964433321000               0 000011111 011236778988899


Q ss_pred             hhccCceEEEEec
Q 043411          201 EIVSGGRMFLTFL  213 (242)
Q Consensus       201 EL~pGG~lvl~~~  213 (242)
                      -|+|||+|++...
T Consensus       159 ~LkpgG~l~~~~~  171 (260)
T 2ozv_A          159 IMVSGGQLSLISR  171 (260)
T ss_dssp             HEEEEEEEEEEEC
T ss_pred             HcCCCCEEEEEEc
Confidence            9999999999653

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.63  E-value=0.00025  Score=60.83  Aligned_cols=126  Identities=8%  Similarity=0.084  Sum_probs=63.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.+        +       .+ .+|+.-|+-. +.-.+.+      .......... -+..+
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~--------~-------~~-~~v~gvDi~~-~~~~~a~------~n~~~~~~~~-~v~~~  104 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLST--------R-------TK-AKIVGVEIQE-RLADMAK------RSVAYNQLED-QIEII  104 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHT--------T-------CC-CEEEEECCSH-HHHHHHH------HHHHHTTCTT-TEEEE
T ss_pred             CCCEEEEcCCchhHHHHHHHH--------h-------cC-CcEEEEECCH-HHHHHHH------HHHHHCCCcc-cEEEE
Confidence            467999999999998886651        1       12 3788888752 1111111      1111111111 12234


Q ss_pred             cccccccc--CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          130 LGSFYQRL--FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       130 pgSFy~~l--~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      .+++.+-.  ++++++|+|++.-..+.....  .+           .++......-......++..|++.-.+-|+|||+
T Consensus       105 ~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~--~~-----------~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~  171 (259)
T 3lpm_A          105 EYDLKKITDLIPKERADIVTCNPPYFATPDT--SL-----------KNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGK  171 (259)
T ss_dssp             CSCGGGGGGTSCTTCEEEEEECCCC------------------------------------HHHHHHHHHHHHHEEEEEE
T ss_pred             ECcHHHhhhhhccCCccEEEECCCCCCCccc--cC-----------CCCchHHHhhhccccCCHHHHHHHHHHHccCCcE
Confidence            44664333  568999999995333221000  00           0000000000111235677899999999999999


Q ss_pred             EEEEe
Q 043411          208 MFLTF  212 (242)
Q Consensus       208 lvl~~  212 (242)
                      +++..
T Consensus       172 l~~~~  176 (259)
T 3lpm_A          172 ANFVH  176 (259)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99954

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.63  E-value=0.0002  Score=63.61  Aligned_cols=83  Identities=12%  Similarity=0.093  Sum_probs=48.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.+..             . ...+|+--|+.. +.-...      +.........+  +..+
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~-------------~-~~~~v~gvD~s~-~~~~~a------~~~~~~~g~~~--v~~~  131 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVV-------------G-EKGLVVSVEYSR-KICEIA------KRNVERLGIEN--VIFV  131 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH-------------C-TTCEEEEEESCH-HHHHHH------HHHHHHTTCCS--EEEE
T ss_pred             CcCEEEEecCCchHHHHHHHHhc-------------C-CCCEEEEEECCH-HHHHHH------HHHHHHcCCCC--eEEE
Confidence            35799999999999888776332             0 124567667641 111111      11111111122  2334


Q ss_pred             ccccccccCCCCceeEEEcccceeec
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWL  155 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWL  155 (242)
                      .+++.+.+.+.+++|+|++...+|++
T Consensus       132 ~~d~~~~~~~~~~fD~Iv~~~~~~~~  157 (317)
T 1dl5_A          132 CGDGYYGVPEFSPYDVIFVTVGVDEV  157 (317)
T ss_dssp             ESCGGGCCGGGCCEEEEEECSBBSCC
T ss_pred             ECChhhccccCCCeEEEEEcCCHHHH
Confidence            45665545567899999999888874

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.62  E-value=9.2e-05  Score=59.21  Aligned_cols=112  Identities=12%  Similarity=-0.026  Sum_probs=59.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.+        +        +..+|+..|+-. +.-...+.      ........ --+..+
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~--------~--------~~~~v~~vD~~~-~~~~~a~~------~~~~~~~~-~~~~~~   86 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVS--------R--------GMSAAVLVEKNR-KAQAIIQD------NIIMTKAE-NRFTLL   86 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHH--------T--------TCCEEEEECCCH-HHHHHHHH------HHHTTTCG-GGEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHH--------c--------CCCEEEEEECCH-HHHHHHHH------HHHHcCCC-CceEEE
Confidence            457999999999999886651        1        125777777742 11111111      11110000 012234


Q ss_pred             cccccccc-CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          130 LGSFYQRL-FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       130 pgSFy~~l-~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      .+++.+.+ ..++++|++++....++                              ....+.+..+.+  .+-|+|||++
T Consensus        87 ~~d~~~~~~~~~~~fD~i~~~~~~~~------------------------------~~~~~~~~~l~~--~~~L~~gG~l  134 (177)
T 2esr_A           87 KMEAERAIDCLTGRFDLVFLDPPYAK------------------------------ETIVATIEALAA--KNLLSEQVMV  134 (177)
T ss_dssp             CSCHHHHHHHBCSCEEEEEECCSSHH------------------------------HHHHHHHHHHHH--TTCEEEEEEE
T ss_pred             ECcHHHhHHhhcCCCCEEEECCCCCc------------------------------chHHHHHHHHHh--CCCcCCCcEE
Confidence            45664422 23467999998432221                              000111222222  4779999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++.......
T Consensus       135 ~~~~~~~~~  143 (177)
T 2esr_A          135 VCETDKTVL  143 (177)
T ss_dssp             EEEEETTCC
T ss_pred             EEEECCccc
Confidence            999877654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.60  E-value=0.00015  Score=62.51  Aligned_cols=102  Identities=22%  Similarity=0.209  Sum_probs=59.7

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.        +.    +   +  +|+.-|+.. ..-...+      .....+...   +..+
T Consensus       120 ~~~~VLDiGcG~G~l~~~la--------~~----g---~--~v~gvDi~~-~~v~~a~------~n~~~~~~~---v~~~  172 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAE--------KL----G---G--KALGVDIDP-MVLPQAE------ANAKRNGVR---PRFL  172 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HT----T---C--EEEEEESCG-GGHHHHH------HHHHHTTCC---CEEE
T ss_pred             CCCEEEEecCCCcHHHHHHH--------Hh----C---C--eEEEEECCH-HHHHHHH------HHHHHcCCc---EEEE
Confidence            35799999999999877553        11    1   2  777777742 1111111      111111111   2234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+. +|++++|++++....|+                                    +..++..-.+-|+|||+++
T Consensus       173 ~~d~~~~-~~~~~fD~Vv~n~~~~~------------------------------------~~~~l~~~~~~LkpgG~li  215 (254)
T 2nxc_A          173 EGSLEAA-LPFGPFDLLVANLYAEL------------------------------------HAALAPRYREALVPGGRAL  215 (254)
T ss_dssp             ESCHHHH-GGGCCEEEEEEECCHHH------------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred             ECChhhc-CcCCCCCEEEECCcHHH------------------------------------HHHHHHHHHHHcCCCCEEE
Confidence            4455443 57789999998543322                                    2236666677789999999


Q ss_pred             EEeccc
Q 043411          210 LTFLGR  215 (242)
Q Consensus       210 l~~~g~  215 (242)
                      ++.+..
T Consensus       216 ls~~~~  221 (254)
T 2nxc_A          216 LTGILK  221 (254)
T ss_dssp             EEEEEG
T ss_pred             EEeecc
Confidence            987654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.60  E-value=3.5e-05  Score=66.57  Aligned_cols=60  Identities=15%  Similarity=0.130  Sum_probs=38.1

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCC
Q 043411           18 YAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDL   97 (242)
Q Consensus        18 Y~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDL   97 (242)
                      |......|.+....+...|+.    +   ......+|+|+|||+|..|..+.+.+ .             +.-+|+--|+
T Consensus        51 yr~w~~~~skla~~ll~~l~~----~---~l~~g~~VLDlG~GtG~~t~~la~~v-~-------------~~G~V~avD~  109 (232)
T 3id6_C           51 YREWNAFRSKLAGAILKGLKT----N---PIRKGTKVLYLGAASGTTISHVSDII-E-------------LNGKAYGVEF  109 (232)
T ss_dssp             EEECCTTTCHHHHHHHTTCSC----C---SCCTTCEEEEETCTTSHHHHHHHHHH-T-------------TTSEEEEEEC
T ss_pred             hhhhchHHHHHHHHHHhhhhh----c---CCCCCCEEEEEeecCCHHHHHHHHHh-C-------------CCCEEEEEEC
Confidence            666667777766555443211    1   12235899999999999988776333 1             2457777776


Q ss_pred             C
Q 043411           98 P   98 (242)
Q Consensus        98 p   98 (242)
                      -
T Consensus       110 s  110 (232)
T 3id6_C          110 S  110 (232)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.60  E-value=0.00023  Score=60.24  Aligned_cols=104  Identities=17%  Similarity=0.221  Sum_probs=62.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+.+.+           +   |..+++.-|+.. ++-...+..      +......+ .+..+
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~-----------~---~~~~v~~~D~~~-~~~~~a~~~------~~~~~~~~-~v~~~  150 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIV-----------G---PEGRVVSYEIRE-DFAKLAWEN------IKWAGFDD-RVTIK  150 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH-----------C---TTSEEEEECSCH-HHHHHHHHH------HHHHTCTT-TEEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHHh-----------C---CCeEEEEEecCH-HHHHHHHHH------HHHcCCCC-ceEEE
Confidence            45799999999999988776432           1   246777777752 222222111      11111111 12235


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++. ..+|++++|++++.        .|..                              ..+|+.-.+-|+|||+++
T Consensus       151 ~~d~~-~~~~~~~~D~v~~~--------~~~~------------------------------~~~l~~~~~~L~~gG~l~  191 (255)
T 3mb5_A          151 LKDIY-EGIEEENVDHVILD--------LPQP------------------------------ERVVEHAAKALKPGGFFV  191 (255)
T ss_dssp             CSCGG-GCCCCCSEEEEEEC--------SSCG------------------------------GGGHHHHHHHEEEEEEEE
T ss_pred             ECchh-hccCCCCcCEEEEC--------CCCH------------------------------HHHHHHHHHHcCCCCEEE
Confidence            55775 45888999999972        2321                              016667777889999999


Q ss_pred             EEecc
Q 043411          210 LTFLG  214 (242)
Q Consensus       210 l~~~g  214 (242)
                      +....
T Consensus       192 ~~~~~  196 (255)
T 3mb5_A          192 AYTPC  196 (255)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            97643

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.60  E-value=8e-05  Score=63.80  Aligned_cols=47  Identities=23%  Similarity=0.225  Sum_probs=30.0

Q ss_pred             HHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCC
Q 043411           36 LEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGN  100 (242)
Q Consensus        36 l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~N  100 (242)
                      |++++..+..  .+...+|+|+|||+|..|..+.+        +        ..-+|+--|+-.+
T Consensus        25 L~~~L~~~~~--~~~g~~VLDiGcGtG~~t~~la~--------~--------g~~~V~gvDis~~   71 (232)
T 3opn_A           25 LEKALKEFHL--EINGKTCLDIGSSTGGFTDVMLQ--------N--------GAKLVYALDVGTN   71 (232)
T ss_dssp             HHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHH--------T--------TCSEEEEECSSCC
T ss_pred             HHHHHHHcCC--CCCCCEEEEEccCCCHHHHHHHh--------c--------CCCEEEEEcCCHH
Confidence            3444444322  23456999999999999887752        1        1147888888643

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.59  E-value=0.00028  Score=58.71  Aligned_cols=126  Identities=10%  Similarity=0.008  Sum_probs=63.8

Q ss_pred             CCccEEeeecCC-CCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceee
Q 043411           49 PGCFNVADLGCS-SGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIA  127 (242)
Q Consensus        49 ~~~~~IaDlGCs-~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~  127 (242)
                      +...+|+|+||| +|..++.+.+..                ..+|+..|+-. +.-...      +........ +  +.
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~----------------~~~v~~vD~s~-~~~~~a------~~~~~~~~~-~--v~  107 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFF----------------NCKVTATEVDE-EFFEYA------RRNIERNNS-N--VR  107 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHH----------------CCEEEEEECCH-HHHHHH------HHHHHHTTC-C--CE
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhc----------------CCEEEEEECCH-HHHHHH------HHHHHHhCC-C--cE
Confidence            346899999999 999988765321                25667777641 111111      111111111 1  12


Q ss_pred             ccccccc-cccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          128 GMLGSFY-QRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       128 ~vpgSFy-~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      .+-++.. -.-++++++|++++.-..+|......  .. +...+.....           ...+...||+.-.+-|+|||
T Consensus       108 ~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~--~~-~~~~~~~~~~-----------~~~~~~~~l~~~~~~LkpgG  173 (230)
T 3evz_A          108 LVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRV--LT-EREAIGGGKY-----------GEEFSVKLLEEAFDHLNPGG  173 (230)
T ss_dssp             EEECSSCSSTTTCCSCEEEEEECCCCC------------------CCSS-----------SCHHHHHHHHHHGGGEEEEE
T ss_pred             EEeCCchhhhhcccCceeEEEECCCCcCCccccc--cC-hhhhhccCcc-----------chHHHHHHHHHHHHHhCCCe
Confidence            2333431 12245689999999766666544111  00 0000000000           01233558888888899999


Q ss_pred             eEEEEecc
Q 043411          207 RMFLTFLG  214 (242)
Q Consensus       207 ~lvl~~~g  214 (242)
                      ++++.+..
T Consensus       174 ~l~~~~~~  181 (230)
T 3evz_A          174 KVALYLPD  181 (230)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEecc
Confidence            99997654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.58  E-value=0.00025  Score=61.44  Aligned_cols=103  Identities=7%  Similarity=0.089  Sum_probs=62.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhc-CCCCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKD-KFGPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~-~~~~~f~~~  128 (242)
                      ...+|+|+|||+|..++.+.+.+              .|..+|+.-|+.. +.-...+      ..+... ...+  +..
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~--------------~~~~~v~~vD~s~-~~~~~a~------~~~~~~~g~~~--v~~  166 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYAL--------------NGKGTLTVVERDE-DNLKKAM------DNLSEFYDIGN--VRT  166 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH--------------TTSSEEEEECSCH-HHHHHHH------HHHHTTSCCTT--EEE
T ss_pred             CcCEEEEecCCCCHHHHHHHHHc--------------CCCCEEEEEECCH-HHHHHHH------HHHHhcCCCCc--EEE
Confidence            45799999999999988776432              0236777777742 1111111      111111 1112  223


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+ .+|++++|++++    |    +|..                              ..+|+.-.+-|+|||+|
T Consensus       167 ~~~d~~~-~~~~~~fD~Vi~----~----~~~~------------------------------~~~l~~~~~~LkpgG~l  207 (275)
T 1yb2_A          167 SRSDIAD-FISDQMYDAVIA----D----IPDP------------------------------WNHVQKIASMMKPGSVA  207 (275)
T ss_dssp             ECSCTTT-CCCSCCEEEEEE----C----CSCG------------------------------GGSHHHHHHTEEEEEEE
T ss_pred             EECchhc-cCcCCCccEEEE----c----CcCH------------------------------HHHHHHHHHHcCCCCEE
Confidence            4456655 667889999998    2    2321                              02677777788999999


Q ss_pred             EEEecc
Q 043411          209 FLTFLG  214 (242)
Q Consensus       209 vl~~~g  214 (242)
                      ++....
T Consensus       208 ~i~~~~  213 (275)
T 1yb2_A          208 TFYLPN  213 (275)
T ss_dssp             EEEESS
T ss_pred             EEEeCC
Confidence            998754

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.54  E-value=0.00011  Score=65.22  Aligned_cols=114  Identities=13%  Similarity=0.038  Sum_probs=61.9

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceee
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIA  127 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~  127 (242)
                      +++.+|+|+|||+|..+..+++               ..+..+|+.-|+-. +.-.+.+. ++......   ..+++  .
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~---------------~~~~~~v~~vDid~-~~i~~a~~~~~~~~~~~---~~~~v--~  152 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLR---------------HGTVEHCDLVDIDG-EVMEQSKQHFPQISRSL---ADPRA--T  152 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHT---------------CTTCCEEEEEESCH-HHHHHHHHHCHHHHGGG---GCTTE--E
T ss_pred             CCCCeEEEEcCCCCHHHHHHHh---------------CCCCCEEEEEECCH-HHHHHHHHHhHHhhccc---CCCcE--E
Confidence            4568999999999998876641               11335777777752 22222221 21111111   01121  1


Q ss_pred             ccccccccccC--CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          128 GMLGSFYQRLF--PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       128 ~vpgSFy~~l~--p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      .+-++..+-+.  +++++|+|++....++.   |..      ..+             .       ..|++.-.+-|+||
T Consensus       153 ~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~---~~~------~l~-------------~-------~~~l~~~~~~Lkpg  203 (304)
T 3bwc_A          153 VRVGDGLAFVRQTPDNTYDVVIIDTTDPAG---PAS------KLF-------------G-------EAFYKDVLRILKPD  203 (304)
T ss_dssp             EEESCHHHHHHSSCTTCEEEEEEECC------------------C-------------C-------HHHHHHHHHHEEEE
T ss_pred             EEECcHHHHHHhccCCceeEEEECCCCccc---cch------hhh-------------H-------HHHHHHHHHhcCCC
Confidence            23345543333  57899999996655541   110      000             0       23777778889999


Q ss_pred             ceEEEEe
Q 043411          206 GRMFLTF  212 (242)
Q Consensus       206 G~lvl~~  212 (242)
                      |+|++..
T Consensus       204 G~lv~~~  210 (304)
T 3bwc_A          204 GICCNQG  210 (304)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEec
Confidence            9999974

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.52  E-value=0.00019  Score=61.44  Aligned_cols=108  Identities=10%  Similarity=0.080  Sum_probs=60.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCC-Cceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFG-PCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~-~~f~~~  128 (242)
                      ...+|+|+|||+|..|+.+.+.+              ++..+|+--|+.. +.-...+      ..+...... ++  ..
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~s~-~~~~~a~------~~~~~~g~~~~v--~~  119 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMAREL--------------PADGQLLTLEADA-HHAQVAR------ENLQLAGVDQRV--TL  119 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTS--------------CTTCEEEEEECCH-HHHHHHH------HHHHHTTCTTTE--EE
T ss_pred             CCCEEEEecCCchHHHHHHHHhC--------------CCCCEEEEEECCH-HHHHHHH------HHHHHcCCCCcE--EE
Confidence            35799999999999998776221              1246788878742 1211111      111111111 21  12


Q ss_pred             cccccc---cccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          129 MLGSFY---QRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       129 vpgSFy---~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      +-++..   ..+...+++|+|++..   |     .                            .+...+|+.-.+-|+||
T Consensus       120 ~~~d~~~~l~~~~~~~~fD~V~~d~---~-----~----------------------------~~~~~~l~~~~~~LkpG  163 (248)
T 3tfw_A          120 REGPALQSLESLGECPAFDLIFIDA---D-----K----------------------------PNNPHYLRWALRYSRPG  163 (248)
T ss_dssp             EESCHHHHHHTCCSCCCCSEEEECS---C-----G----------------------------GGHHHHHHHHHHTCCTT
T ss_pred             EEcCHHHHHHhcCCCCCeEEEEECC---c-----h----------------------------HHHHHHHHHHHHhcCCC
Confidence            233442   2332345899998732   1     1                            11122677777889999


Q ss_pred             ceEEEEecccC
Q 043411          206 GRMFLTFLGRS  216 (242)
Q Consensus       206 G~lvl~~~g~~  216 (242)
                      |+|++...-..
T Consensus       164 G~lv~~~~~~~  174 (248)
T 3tfw_A          164 TLIIGDNVVRD  174 (248)
T ss_dssp             CEEEEECCSGG
T ss_pred             eEEEEeCCCcC
Confidence            99999876443

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.52  E-value=0.00024  Score=66.72  Aligned_cols=21  Identities=19%  Similarity=0.150  Sum_probs=18.0

Q ss_pred             CccEEeeecCCCCcchHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVS   70 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~   70 (242)
                      ...+|+|+|||+|..++.+..
T Consensus       242 ~g~~VLDLGCGsG~la~~LA~  262 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQAAL  262 (433)
T ss_dssp             TTCEEEEESCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHH
Confidence            457999999999999987764

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.51  E-value=0.00034  Score=57.87  Aligned_cols=26  Identities=12%  Similarity=0.167  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHhhhccCceEEEEeccc
Q 043411          190 DFSAFLSLRSEEIVSGGRMFLTFLGR  215 (242)
Q Consensus       190 D~~~FL~~Ra~EL~pGG~lvl~~~g~  215 (242)
                      .....|+.-.+-|+|||.|++..+..
T Consensus       117 l~~~~l~~a~~~LkpGG~lv~k~~~~  142 (191)
T 3dou_A          117 IGQRVMEIAVRYLRNGGNVLLKQFQG  142 (191)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             HHHHHHHHHHHHccCCCEEEEEEcCC
Confidence            34556777778899999999988743

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.50  E-value=0.0001  Score=60.98  Aligned_cols=19  Identities=16%  Similarity=-0.055  Sum_probs=16.2

Q ss_pred             ccEEeeecCCCCcchHHHH
Q 043411           51 CFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~   69 (242)
                      ..+|+|+|||+|..++.++
T Consensus        54 ~~~vLDlGcGtG~~~~~~~   72 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEAL   72 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHH
T ss_pred             CCeEEEcCCccCHHHHHHH
Confidence            3699999999999988654

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.49  E-value=0.00017  Score=62.16  Aligned_cols=102  Identities=17%  Similarity=0.095  Sum_probs=60.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+....               |..+|+.-|.-. +.-...+.      ........+  +..+
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~---------------~~~~v~~vD~s~-~~~~~a~~------~~~~~~l~~--v~~~  135 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVR---------------PELELVLVDATR-KKVAFVER------AIEVLGLKG--ARAL  135 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHC---------------TTCEEEEEESCH-HHHHHHHH------HHHHHTCSS--EEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHHH------HHHHhCCCc--eEEE
Confidence            46799999999999988775211               347788888752 11111111      111111223  2334


Q ss_pred             ccccccccC---CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          130 LGSFYQRLF---PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       130 pgSFy~~l~---p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      .++..+-..   +++++|+|+|...-                                     ++..+++.-.+-|+|||
T Consensus       136 ~~d~~~~~~~~~~~~~fD~I~s~a~~-------------------------------------~~~~ll~~~~~~LkpgG  178 (249)
T 3g89_A          136 WGRAEVLAREAGHREAYARAVARAVA-------------------------------------PLCVLSELLLPFLEVGG  178 (249)
T ss_dssp             ECCHHHHTTSTTTTTCEEEEEEESSC-------------------------------------CHHHHHHHHGGGEEEEE
T ss_pred             ECcHHHhhcccccCCCceEEEECCcC-------------------------------------CHHHHHHHHHHHcCCCe
Confidence            456533222   24899999983210                                     22347777888899999


Q ss_pred             eEEEEe
Q 043411          207 RMFLTF  212 (242)
Q Consensus       207 ~lvl~~  212 (242)
                      ++++..
T Consensus       179 ~l~~~~  184 (249)
T 3g89_A          179 AAVAMK  184 (249)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            988754

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.48  E-value=0.00045  Score=57.37  Aligned_cols=102  Identities=11%  Similarity=-0.025  Sum_probs=57.7

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCC-Cceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFG-PCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~-~~f~~~  128 (242)
                      ...+|+|+|||+|..++.+.+.                 ..+|+.-|+-. +.-...+      ......... +  +..
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~-----------------~~~v~~vD~s~-~~~~~a~------~~~~~~g~~~~--v~~  108 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLA-----------------GGRAITIEPRA-DRIENIQ------KNIDTYGLSPR--MRA  108 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-----------------TCEEEEEESCH-HHHHHHH------HHHHHTTCTTT--EEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHc-----------------CCEEEEEeCCH-HHHHHHH------HHHHHcCCCCC--EEE
Confidence            4579999999999998876521                 14566666641 1111111      111111111 2  223


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+.+....++|++++..++                                     +.. +++.-.+-|+|||++
T Consensus       109 ~~~d~~~~~~~~~~~D~v~~~~~~-------------------------------------~~~-~l~~~~~~LkpgG~l  150 (204)
T 3njr_A          109 VQGTAPAALADLPLPEAVFIGGGG-------------------------------------SQA-LYDRLWEWLAPGTRI  150 (204)
T ss_dssp             EESCTTGGGTTSCCCSEEEECSCC-------------------------------------CHH-HHHHHHHHSCTTCEE
T ss_pred             EeCchhhhcccCCCCCEEEECCcc-------------------------------------cHH-HHHHHHHhcCCCcEE
Confidence            445665544444578888863321                                     111 566666778999999


Q ss_pred             EEEeccc
Q 043411          209 FLTFLGR  215 (242)
Q Consensus       209 vl~~~g~  215 (242)
                      ++.....
T Consensus       151 v~~~~~~  157 (204)
T 3njr_A          151 VANAVTL  157 (204)
T ss_dssp             EEEECSH
T ss_pred             EEEecCc
Confidence            9988754

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.48  E-value=0.00019  Score=64.74  Aligned_cols=77  Identities=17%  Similarity=0.196  Sum_probs=43.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~  128 (242)
                      +..+|+|+|||+|..++.+.+        .        +..+|+.-|+.  +.-...+..      +..... .+  +..
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~--------~--------g~~~V~~vD~s--~~~~~a~~~------~~~~~l~~~--v~~  103 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQ--------A--------GARKIYAVEAS--TMAQHAEVL------VKSNNLTDR--IVV  103 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--------T--------TCSEEEEEECS--THHHHHHHH------HHHTTCTTT--EEE
T ss_pred             CcCEEEEcCCCccHHHHHHHh--------C--------CCCEEEEECCH--HHHHHHHHH------HHHcCCCCc--EEE
Confidence            357999999999998876641        1        12578888875  322222211      111111 12  223


Q ss_pred             cccccccccCCCCceeEEEccccee
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVH  153 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alh  153 (242)
                      +.+++. .+-+++++|+|+|...++
T Consensus       104 ~~~d~~-~~~~~~~~D~Ivs~~~~~  127 (348)
T 2y1w_A          104 IPGKVE-EVSLPEQVDIIISEPMGY  127 (348)
T ss_dssp             EESCTT-TCCCSSCEEEEEECCCBT
T ss_pred             EEcchh-hCCCCCceeEEEEeCchh
Confidence            445653 333457899999976543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.45  E-value=0.00014  Score=63.53  Aligned_cols=116  Identities=14%  Similarity=0.068  Sum_probs=61.6

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-----CCce
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-----GPCF  125 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-----~~~f  125 (242)
                      ..+|+|+|||+|..++.+..        .    +    .-+|+..|+++.+.-...+...... .......     .++-
T Consensus        80 ~~~vLDlG~G~G~~~~~~a~--------~----~----~~~v~~~D~s~~~~~~~a~~n~~~N-~~~~~~~~~~~~~~v~  142 (281)
T 3bzb_A           80 GKTVCELGAGAGLVSIVAFL--------A----G----ADQVVATDYPDPEILNSLESNIREH-TANSCSSETVKRASPK  142 (281)
T ss_dssp             TCEEEETTCTTSHHHHHHHH--------T----T----CSEEEEEECSCHHHHHHHHHHHHTT-CC----------CCCE
T ss_pred             CCeEEEecccccHHHHHHHH--------c----C----CCEEEEEeCCCHHHHHHHHHHHHHh-hhhhcccccCCCCCeE
Confidence            46999999999998875541        1    1    1378888884323333322211000 0000000     1221


Q ss_pred             ee-ccccccccccC---CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 043411          126 IA-GMLGSFYQRLF---PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEE  201 (242)
Q Consensus       126 ~~-~vpgSFy~~l~---p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~E  201 (242)
                      +. ..-++....+.   +++++|+|+++.++++....                                 ..+|+.-.+-
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~---------------------------------~~ll~~l~~~  189 (281)
T 3bzb_A          143 VVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAH---------------------------------DALLRSVKML  189 (281)
T ss_dssp             EEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGH---------------------------------HHHHHHHHHH
T ss_pred             EEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHH---------------------------------HHHHHHHHHH
Confidence            11 11222223333   57899999998888873332                                 2256555666


Q ss_pred             hc---c--CceEEEEecccC
Q 043411          202 IV---S--GGRMFLTFLGRS  216 (242)
Q Consensus       202 L~---p--GG~lvl~~~g~~  216 (242)
                      |+   |  ||++++.+..+.
T Consensus       190 Lk~~~p~~gG~l~v~~~~~~  209 (281)
T 3bzb_A          190 LALPANDPTAVALVTFTHHR  209 (281)
T ss_dssp             BCCTTTCTTCEEEEEECC--
T ss_pred             hcccCCCCCCEEEEEEEeee
Confidence            78   8  998888665543

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.45  E-value=0.00086  Score=67.87  Aligned_cols=117  Identities=9%  Similarity=-0.009  Sum_probs=69.7

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.+        .      ..+..+|+--|+-. ..-...+.  ...........+.--+..+
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr--------~------g~p~a~VtGVDIS~-emLe~ARe--RLa~~lnAkr~gl~nVefi  783 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLD--------Y------PTSLQTIIGVDISP-KGLARAAK--MLHVKLNKEACNVKSATLY  783 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTS--------S------CCCCCEEEEEESCH-HHHHHHHH--HHHHHTTTTCSSCSEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHH--------h------CCCCCeEEEEECCH-HHHHHHHH--HhhhccchhhcCCCceEEE
Confidence            457999999999999887651        1      11335777777752 11111110  0000000000011122334


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      -++..+--++.+++|+|++..++||+.+                               .+...||+.-.+-|+|| +++
T Consensus       784 qGDa~dLp~~d~sFDlVV~~eVLeHL~d-------------------------------p~l~~~L~eI~RvLKPG-~LI  831 (950)
T 3htx_A          784 DGSILEFDSRLHDVDIGTCLEVIEHMEE-------------------------------DQACEFGEKVLSLFHPK-LLI  831 (950)
T ss_dssp             ESCTTSCCTTSCSCCEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHTTCCS-EEE
T ss_pred             ECchHhCCcccCCeeEEEEeCchhhCCh-------------------------------HHHHHHHHHHHHHcCCC-EEE
Confidence            5577666667899999999999999654                               12223777778888999 888


Q ss_pred             EEeccc
Q 043411          210 LTFLGR  215 (242)
Q Consensus       210 l~~~g~  215 (242)
                      ++++.+
T Consensus       832 ISTPN~  837 (950)
T 3htx_A          832 VSTPNY  837 (950)
T ss_dssp             EEECBG
T ss_pred             EEecCc
Confidence            887644

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.44  E-value=0.00036  Score=59.93  Aligned_cols=104  Identities=15%  Similarity=0.122  Sum_probs=62.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhc-C--CCCcee
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKD-K--FGPCFI  126 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~-~--~~~~f~  126 (242)
                      ...+|+|+|||+|..+..+...+           +   |..+++.-|+-. +.-...+..      +... .  ..+  +
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~-----------~---~~~~v~~vD~~~-~~~~~a~~~------~~~~~g~~~~~--v  155 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAV-----------G---PAGQVISYEQRA-DHAEHARRN------VSGCYGQPPDN--W  155 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH-----------C---TTSEEEEECSCH-HHHHHHHHH------HHHHHTSCCTT--E
T ss_pred             CCCEEEEEcccccHHHHHHHHHh-----------C---CCCEEEEEeCCH-HHHHHHHHH------HHHhcCCCCCc--E
Confidence            35699999999999988776332           1   235677777642 222221111      1000 0  112  2


Q ss_pred             eccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          127 AGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       127 ~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      ..+.+++.+..++++++|++++.        +|..               .               .+|+.-.+-|+|||
T Consensus       156 ~~~~~d~~~~~~~~~~~D~v~~~--------~~~~---------------~---------------~~l~~~~~~L~pgG  197 (280)
T 1i9g_A          156 RLVVSDLADSELPDGSVDRAVLD--------MLAP---------------W---------------EVLDAVSRLLVAGG  197 (280)
T ss_dssp             EEECSCGGGCCCCTTCEEEEEEE--------SSCG---------------G---------------GGHHHHHHHEEEEE
T ss_pred             EEEECchHhcCCCCCceeEEEEC--------CcCH---------------H---------------HHHHHHHHhCCCCC
Confidence            23455776666778899999982        2221               0               16777777889999


Q ss_pred             eEEEEecc
Q 043411          207 RMFLTFLG  214 (242)
Q Consensus       207 ~lvl~~~g  214 (242)
                      ++++....
T Consensus       198 ~l~~~~~~  205 (280)
T 1i9g_A          198 VLMVYVAT  205 (280)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEeCC
Confidence            99998764

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.43  E-value=0.00035  Score=59.38  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=24.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      +..+|+|+|||+|..++.+....               |...|+--|.-
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~---------------~~~~v~gvD~s   82 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAF---------------PEDLILGMEIR   82 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHS---------------TTSEEEEEESC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC---------------CCCCEEEEEcC
Confidence            45789999999999988775221               34567777765

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.42  E-value=0.00017  Score=56.74  Aligned_cols=20  Identities=20%  Similarity=-0.062  Sum_probs=16.8

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..++.+.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~   60 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAA   60 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHH
Confidence            35689999999999887765

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.41  E-value=0.00039  Score=58.25  Aligned_cols=104  Identities=12%  Similarity=0.120  Sum_probs=59.2

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..++.+.+..               |..+|+.-|... +.-...+      ..+......+ -+..+.
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~---------------~~~~v~~vD~~~-~~~~~a~------~~~~~~~~~~-~v~~~~  111 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQAL---------------PEATIVSIERDE-RRYEEAH------KHVKALGLES-RIELLF  111 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHC---------------TTCEEEEECCCH-HHHHHHH------HHHHHTTCTT-TEEEEC
T ss_pred             CCEEEEecCCCcHHHHHHHHHC---------------CCCEEEEEECCH-HHHHHHH------HHHHHcCCCC-cEEEEE
Confidence            4699999999999988776322               236777777642 1111111      1111111111 112233


Q ss_pred             ccccccc---CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          131 GSFYQRL---FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       131 gSFy~~l---~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      +++.+.+   ..++++|++++....+                                    ++..+|+.-.+-|+|||+
T Consensus       112 ~d~~~~~~~~~~~~~fD~I~~~~~~~------------------------------------~~~~~l~~~~~~L~pgG~  155 (233)
T 2gpy_A          112 GDALQLGEKLELYPLFDVLFIDAAKG------------------------------------QYRRFFDMYSPMVRPGGL  155 (233)
T ss_dssp             SCGGGSHHHHTTSCCEEEEEEEGGGS------------------------------------CHHHHHHHHGGGEEEEEE
T ss_pred             CCHHHHHHhcccCCCccEEEECCCHH------------------------------------HHHHHHHHHHHHcCCCeE
Confidence            4553321   1257899999743321                                    233478888888999999


Q ss_pred             EEEEec
Q 043411          208 MFLTFL  213 (242)
Q Consensus       208 lvl~~~  213 (242)
                      +++..+
T Consensus       156 lv~~~~  161 (233)
T 2gpy_A          156 ILSDNV  161 (233)
T ss_dssp             EEEETT
T ss_pred             EEEEcC
Confidence            999754

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.40  E-value=0.00055  Score=56.60  Aligned_cols=19  Identities=21%  Similarity=0.020  Sum_probs=16.3

Q ss_pred             ccEEeeecCCCCcchHHHH
Q 043411           51 CFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~   69 (242)
                      ..+|+|+|||+|..++.++
T Consensus        55 ~~~vLDlgcG~G~~~~~l~   73 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEAL   73 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHH
T ss_pred             CCeEEEeCCCcCHHHHHHH
Confidence            4699999999999988654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.39  E-value=0.00048  Score=57.81  Aligned_cols=103  Identities=13%  Similarity=0.169  Sum_probs=59.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCC---chHHHhhcCchhHHhhhhcCCCCcee
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGN---DFNSIFESLPDFYERIKKDKFGPCFI  126 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~N---DFn~lf~~l~~~~~~l~~~~~~~~f~  126 (242)
                      ...+|+|+|||+|..+..+.+.+           +   |..+|+--|+...   ++....+.           . .++  
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~-----------g---~~~~v~gvD~s~~~i~~~~~~a~~-----------~-~~v--  128 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIV-----------G---PDGLVYAVEFSHRSGRDLINLAKK-----------R-TNI--  128 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH-----------C---TTCEEEEECCCHHHHHHHHHHHHH-----------C-TTE--
T ss_pred             CCCEEEEEcccCCHHHHHHHHHh-----------C---CCcEEEEEECCHHHHHHHHHHhhc-----------c-CCe--
Confidence            35799999999999988776432           1   2356676676521   11111110           0 121  


Q ss_pred             eccccccccc---cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043411          127 AGMLGSFYQR---LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIV  203 (242)
Q Consensus       127 ~~vpgSFy~~---l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~  203 (242)
                      ..+.+++.+.   -++++++|++++...      .|.                             ....++..-.+-|+
T Consensus       129 ~~~~~d~~~~~~~~~~~~~~D~V~~~~~------~~~-----------------------------~~~~~~~~~~~~Lk  173 (233)
T 2ipx_A          129 IPVIEDARHPHKYRMLIAMVDVIFADVA------QPD-----------------------------QTRIVALNAHTFLR  173 (233)
T ss_dssp             EEECSCTTCGGGGGGGCCCEEEEEECCC------CTT-----------------------------HHHHHHHHHHHHEE
T ss_pred             EEEEcccCChhhhcccCCcEEEEEEcCC------Ccc-----------------------------HHHHHHHHHHHHcC
Confidence            1233455432   235789999998332      111                             11225666677789


Q ss_pred             cCceEEEEeccc
Q 043411          204 SGGRMFLTFLGR  215 (242)
Q Consensus       204 pGG~lvl~~~g~  215 (242)
                      |||++++++...
T Consensus       174 pgG~l~i~~~~~  185 (233)
T 2ipx_A          174 NGGHFVISIKAN  185 (233)
T ss_dssp             EEEEEEEEEEHH
T ss_pred             CCeEEEEEEccc
Confidence            999999987654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.39  E-value=0.00043  Score=58.38  Aligned_cols=104  Identities=12%  Similarity=0.041  Sum_probs=61.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhc-CCCCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKD-KFGPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~-~~~~~f~~~  128 (242)
                      ...+|+|+|||+|..++.+.+.+           +   |..+++.-|+.. +.-...+.      .+... ...+  +..
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~-----------~---~~~~v~~~D~~~-~~~~~a~~------~~~~~~g~~~--v~~  152 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAV-----------G---EKGLVESYEARP-HHLAQAER------NVRAFWQVEN--VRF  152 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH-----------C---TTSEEEEEESCH-HHHHHHHH------HHHHHCCCCC--EEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHh-----------C---CCCEEEEEeCCH-HHHHHHHH------HHHHhcCCCC--EEE
Confidence            45799999999999988776332           1   235677667642 11111111      11111 1112  223


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+.-+|++++|++++    +    .|..                              ..+|+.-.+-|+|||++
T Consensus       153 ~~~d~~~~~~~~~~~D~v~~----~----~~~~------------------------------~~~l~~~~~~L~~gG~l  194 (258)
T 2pwy_A          153 HLGKLEEAELEEAAYDGVAL----D----LMEP------------------------------WKVLEKAALALKPDRFL  194 (258)
T ss_dssp             EESCGGGCCCCTTCEEEEEE----E----SSCG------------------------------GGGHHHHHHHEEEEEEE
T ss_pred             EECchhhcCCCCCCcCEEEE----C----CcCH------------------------------HHHHHHHHHhCCCCCEE
Confidence            44576544378889999997    2    2321                              01677777788999999


Q ss_pred             EEEecc
Q 043411          209 FLTFLG  214 (242)
Q Consensus       209 vl~~~g  214 (242)
                      ++....
T Consensus       195 ~~~~~~  200 (258)
T 2pwy_A          195 VAYLPN  200 (258)
T ss_dssp             EEEESC
T ss_pred             EEEeCC
Confidence            998754

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.39  E-value=0.0005  Score=54.36  Aligned_cols=75  Identities=16%  Similarity=0.084  Sum_probs=43.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.+                 +..+++..|... +.-...+      .........+  +..+
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~-----------------~~~~v~~vD~~~-~~~~~a~------~~~~~~~~~~--~~~~   88 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAK-----------------RCKFVYAIDYLD-GAIEVTK------QNLAKFNIKN--CQII   88 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHT-----------------TSSEEEEEECSH-HHHHHHH------HHHHHTTCCS--EEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHh-----------------cCCeEEEEeCCH-HHHHHHH------HHHHHcCCCc--EEEE
Confidence            457999999999998887752                 136677777642 1111111      1111111112  2234


Q ss_pred             ccccccccCCCCceeEEEcccc
Q 043411          130 LGSFYQRLFPSRGINFIHSSYS  151 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~a  151 (242)
                      .+++.+ .+|++++|++++...
T Consensus        89 ~~d~~~-~~~~~~~D~i~~~~~  109 (183)
T 2yxd_A           89 KGRAED-VLDKLEFNKAFIGGT  109 (183)
T ss_dssp             ESCHHH-HGGGCCCSEEEECSC
T ss_pred             ECCccc-cccCCCCcEEEECCc
Confidence            556655 567789999998655

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.38  E-value=0.00072  Score=56.99  Aligned_cols=21  Identities=24%  Similarity=0.437  Sum_probs=17.8

Q ss_pred             CccEEeeecCCCCcchHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVS   70 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~   70 (242)
                      ...+|+|+|||+|..++.+.+
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~   80 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFAS   80 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHH
T ss_pred             CcCEEEEEeCCCCHHHHHHHH
Confidence            357999999999999987763

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.38  E-value=0.00043  Score=64.23  Aligned_cols=127  Identities=13%  Similarity=0.122  Sum_probs=70.9

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..|..+.+..               +..+|+-+|....=...+-+.+.       ......   ..+.
T Consensus       247 g~~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~~~~~l~~~~~~~~-------~~g~~~---~~~~  301 (429)
T 1sqg_A          247 GEHILDLCAAPGGKTTHILEVA---------------PEAQVVAVDIDEQRLSRVYDNLK-------RLGMKA---TVKQ  301 (429)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHC---------------TTCEEEEEESSTTTHHHHHHHHH-------HTTCCC---EEEE
T ss_pred             cCeEEEECCCchHHHHHHHHHc---------------CCCEEEEECCCHHHHHHHHHHHH-------HcCCCe---EEEe
Confidence            4699999999999999876321               13688888886432222222211       111111   2233


Q ss_pred             ccccccc--CCCCceeEEEc---ccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          131 GSFYQRL--FPSRGINFIHS---SYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       131 gSFy~~l--~p~~svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      +++..-.  ++++++|+|++   ++....+.+.|....         ..++..+     ....+....+|+.-.+-|+||
T Consensus       302 ~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~---------~~~~~~~-----~~l~~~q~~~L~~a~~~LkpG  367 (429)
T 1sqg_A          302 GDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKW---------LRRDRDI-----PELAQLQSEILDAIWPHLKTG  367 (429)
T ss_dssp             CCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHH---------HCCTTHH-----HHHHHHHHHHHHHHGGGEEEE
T ss_pred             CchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhh---------cCCHHHH-----HHHHHHHHHHHHHHHHhcCCC
Confidence            4543222  56688999986   333333334333100         0011111     122233355888888899999


Q ss_pred             ceEEEEecccC
Q 043411          206 GRMFLTFLGRS  216 (242)
Q Consensus       206 G~lvl~~~g~~  216 (242)
                      |+|+++++...
T Consensus       368 G~lvystcs~~  378 (429)
T 1sqg_A          368 GTLVYATCSVL  378 (429)
T ss_dssp             EEEEEEESCCC
T ss_pred             CEEEEEECCCC
Confidence            99999987653

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.37  E-value=0.00013  Score=61.68  Aligned_cols=104  Identities=11%  Similarity=0.146  Sum_probs=59.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~  128 (242)
                      ...+|+|+|||+|..|+.+...               .|..+|+.-|+-. ..-...+      ..+..... .+  +..
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~---------------~~~~~v~~vD~~~-~~~~~a~------~~~~~~~~~~~--v~~  126 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASI---------------SDDIHVTTIERNE-TMIQYAK------QNLATYHFENQ--VRI  126 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTT---------------CTTCEEEEEECCH-HHHHHHH------HHHHHTTCTTT--EEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHh---------------CCCCEEEEEECCH-HHHHHHH------HHHHHcCCCCc--EEE
Confidence            3579999999999998877621               1246777777742 1111111      11111111 12  222


Q ss_pred             cccccccccCC---CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          129 MLGSFYQRLFP---SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       129 vpgSFy~~l~p---~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      +.+++.+- .|   ++++|++++..   |     .                            .++..||+.-.+-|+||
T Consensus       127 ~~~d~~~~-~~~~~~~~fD~V~~~~---~-----~----------------------------~~~~~~l~~~~~~Lkpg  169 (232)
T 3ntv_A          127 IEGNALEQ-FENVNDKVYDMIFIDA---A-----K----------------------------AQSKKFFEIYTPLLKHQ  169 (232)
T ss_dssp             EESCGGGC-HHHHTTSCEEEEEEET---T-----S----------------------------SSHHHHHHHHGGGEEEE
T ss_pred             EECCHHHH-HHhhccCCccEEEEcC---c-----H----------------------------HHHHHHHHHHHHhcCCC
Confidence            34465432 23   78999998531   1     1                            01223777778899999


Q ss_pred             ceEEEEecc
Q 043411          206 GRMFLTFLG  214 (242)
Q Consensus       206 G~lvl~~~g  214 (242)
                      |+|++...-
T Consensus       170 G~lv~d~~~  178 (232)
T 3ntv_A          170 GLVITDNVL  178 (232)
T ss_dssp             EEEEEECTT
T ss_pred             eEEEEeeCC
Confidence            999985553

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.36  E-value=2.7e-05  Score=65.58  Aligned_cols=85  Identities=16%  Similarity=0.065  Sum_probs=50.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.+        .         -.+|+..|+-. +.-...+      ......... --+..+
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~--------~---------~~~v~~vD~s~-~~~~~a~------~~~~~~~~~-~~~~~~  132 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFAL--------T---------GMRVIAIDIDP-VKIALAR------NNAEVYGIA-DKIEFI  132 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHH--------T---------TCEEEEEESCH-HHHHHHH------HHHHHTTCG-GGEEEE
T ss_pred             CCCEEEECccccCHHHHHHHH--------c---------CCEEEEEECCH-HHHHHHH------HHHHHcCCC-cCeEEE
Confidence            357999999999999987762        1         15666667652 1111111      111111100 012234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCC
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPE  160 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~  160 (242)
                      -+++.+ +.+++++|++++...+||......
T Consensus       133 ~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~  162 (241)
T 3gdh_A          133 CGDFLL-LASFLKADVVFLSPPWGGPDYATA  162 (241)
T ss_dssp             ESCHHH-HGGGCCCSEEEECCCCSSGGGGGS
T ss_pred             ECChHH-hcccCCCCEEEECCCcCCcchhhh
Confidence            456644 337889999999999999877654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.34  E-value=0.00025  Score=58.90  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=25.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      ...+|+|+|||+|..|+.+.+.+              ++..+|+.-|+-
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~   92 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGL--------------SSGGRVVTLEAS   92 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTC--------------CSSCEEEEEESC
T ss_pred             CCCEEEEecCCccHHHHHHHHhC--------------CCCCEEEEEECC
Confidence            35799999999999998776221              124677877774

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.33  E-value=0.0007  Score=59.02  Aligned_cols=104  Identities=11%  Similarity=-0.098  Sum_probs=60.8

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|..|+.+....               +. +|+-.|+.. +.-...+      .....++..+ .+..+-
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~---------------~~-~V~~vD~s~-~~~~~a~------~n~~~n~~~~-~v~~~~  181 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYG---------------KA-KVIAIEKDP-YTFKFLV------ENIHLNKVED-RMSAYN  181 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHT---------------CC-EEEEECCCH-HHHHHHH------HHHHHTTCTT-TEEEEC
T ss_pred             CCEEEEecccCCHHHHHHHHhC---------------CC-EEEEEECCH-HHHHHHH------HHHHHcCCCc-eEEEEE
Confidence            4799999999999998776221               22 688888752 1111111      1111111111 012234


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      ++..+- .+++++|++++        ..|...                             ..||..-.+-|+|||++++
T Consensus       182 ~D~~~~-~~~~~fD~Vi~--------~~p~~~-----------------------------~~~l~~~~~~LkpgG~l~~  223 (278)
T 2frn_A          182 MDNRDF-PGENIADRILM--------GYVVRT-----------------------------HEFIPKALSIAKDGAIIHY  223 (278)
T ss_dssp             SCTTTC-CCCSCEEEEEE--------CCCSSG-----------------------------GGGHHHHHHHEEEEEEEEE
T ss_pred             CCHHHh-cccCCccEEEE--------CCchhH-----------------------------HHHHHHHHHHCCCCeEEEE
Confidence            466433 34889999987        233211                             1266666678899999999


Q ss_pred             EecccC
Q 043411          211 TFLGRS  216 (242)
Q Consensus       211 ~~~g~~  216 (242)
                      ..+...
T Consensus       224 ~~~~~~  229 (278)
T 2frn_A          224 HNTVPE  229 (278)
T ss_dssp             EEEEEG
T ss_pred             EEeecc
Confidence            998764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.32  E-value=8.2e-05  Score=62.15  Aligned_cols=110  Identities=9%  Similarity=0.052  Sum_probs=60.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      +..+|+|+|||+|..|+.+.+.+              ++..+|+.-|+.. +.-.+.+.      .+......+ -+..+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~-~~~~~a~~------~~~~~~~~~-~v~~~  115 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLL--------------QPGARLLTMEINP-DCAAITQQ------MLNFAGLQD-KVTIL  115 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTS--------------CTTCEEEEEESCH-HHHHHHHH------HHHHHTCGG-GEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhC--------------CCCCEEEEEeCCh-HHHHHHHH------HHHHcCCCC-ceEEE
Confidence            35799999999999998876322              1246777777752 12221111      111100000 12223


Q ss_pred             cccccccc--CC----CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043411          130 LGSFYQRL--FP----SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIV  203 (242)
Q Consensus       130 pgSFy~~l--~p----~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~  203 (242)
                      -+++.+-+  ++    .+++|++++....++.                                 .+...+++.. +-|+
T Consensus       116 ~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~---------------------------------~~~~~~~~~~-~~Lk  161 (221)
T 3u81_A          116 NGASQDLIPQLKKKYDVDTLDMVFLDHWKDRY---------------------------------LPDTLLLEKC-GLLR  161 (221)
T ss_dssp             ESCHHHHGGGTTTTSCCCCCSEEEECSCGGGH---------------------------------HHHHHHHHHT-TCCC
T ss_pred             ECCHHHHHHHHHHhcCCCceEEEEEcCCcccc---------------------------------hHHHHHHHhc-cccC
Confidence            44543221  12    2789999875433331                                 1222366666 8899


Q ss_pred             cCceEEEEeccc
Q 043411          204 SGGRMFLTFLGR  215 (242)
Q Consensus       204 pGG~lvl~~~g~  215 (242)
                      |||+|++.....
T Consensus       162 pgG~lv~~~~~~  173 (221)
T 3u81_A          162 KGTVLLADNVIV  173 (221)
T ss_dssp             TTCEEEESCCCC
T ss_pred             CCeEEEEeCCCC
Confidence            999999966553

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.32  E-value=0.00067  Score=60.42  Aligned_cols=128  Identities=13%  Similarity=0.028  Sum_probs=66.0

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..|+.+.+..              .+..+|+-.|+...=    .+.+   +..+......+  +..+.
T Consensus       119 g~~VLDlg~G~G~~t~~la~~~--------------~~~~~v~avD~s~~~----l~~a---~~~~~~~g~~~--v~~~~  175 (315)
T 1ixk_A          119 GEIVADMAAAPGGKTSYLAQLM--------------RNDGVIYAFDVDENR----LRET---RLNLSRLGVLN--VILFH  175 (315)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHT--------------TTCSEEEEECSCHHH----HHHH---HHHHHHHTCCS--EEEES
T ss_pred             CCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEEcCCHHH----HHHH---HHHHHHhCCCe--EEEEE
Confidence            4699999999999999876332              123678888876211    1111   11111111122  22233


Q ss_pred             cccccccCCCCceeEEEcc---cceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          131 GSFYQRLFPSRGINFIHSS---YSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss---~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      +++..-..+++++|+|++.   +.+.-+.+.|...       |  ..++..     .....+....+|+.-.+-|+|||+
T Consensus       176 ~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~-------~--~~~~~~-----~~~~~~~q~~~L~~~~~~LkpGG~  241 (315)
T 1ixk_A          176 SSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERK-------W--NRTMDD-----IKFCQGLQMRLLEKGLEVLKPGGI  241 (315)
T ss_dssp             SCGGGGGGGCCCEEEEEEECCTTSTTTCC-----------------CCHHH-----HHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred             CChhhcccccccCCEEEEeCCCCCcccccCChhHh-------h--cCCHHH-----HHHHHHHHHHHHHHHHHhCCCCCE
Confidence            4553322246789999871   1111111222110       0  001111     122233445688888888999999


Q ss_pred             EEEEeccc
Q 043411          208 MFLTFLGR  215 (242)
Q Consensus       208 lvl~~~g~  215 (242)
                      |+++++..
T Consensus       242 lv~stcs~  249 (315)
T 1ixk_A          242 LVYSTCSL  249 (315)
T ss_dssp             EEEEESCC
T ss_pred             EEEEeCCC
Confidence            99988754

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.31  E-value=0.00034  Score=63.11  Aligned_cols=113  Identities=10%  Similarity=0.074  Sum_probs=63.4

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +++.+|+|+|||+|..+..+.+..               |..++..-|+-. +.-.+.+.      .+.....+++-  .
T Consensus        88 p~~~rVLdIG~G~G~la~~la~~~---------------p~~~v~~VEidp-~vi~~Ar~------~~~~~~~~rv~--v  143 (317)
T 3gjy_A           88 ASKLRITHLGGGACTMARYFADVY---------------PQSRNTVVELDA-ELARLSRE------WFDIPRAPRVK--I  143 (317)
T ss_dssp             GGGCEEEEESCGGGHHHHHHHHHS---------------TTCEEEEEESCH-HHHHHHHH------HSCCCCTTTEE--E
T ss_pred             CCCCEEEEEECCcCHHHHHHHHHC---------------CCcEEEEEECCH-HHHHHHHH------hccccCCCceE--E
Confidence            346799999999998877665211               235666666641 11111111      11000011211  2


Q ss_pred             ccccccccc--CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          129 MLGSFYQRL--FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       129 vpgSFy~~l--~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      +-++..+-+  ++++++|+|++-...+|  ..|..+.                           -..|++...+-|+|||
T Consensus       144 ~~~Da~~~l~~~~~~~fDvIi~D~~~~~--~~~~~L~---------------------------t~efl~~~~r~LkpgG  194 (317)
T 3gjy_A          144 RVDDARMVAESFTPASRDVIIRDVFAGA--ITPQNFT---------------------------TVEFFEHCHRGLAPGG  194 (317)
T ss_dssp             EESCHHHHHHTCCTTCEEEEEECCSTTS--CCCGGGS---------------------------BHHHHHHHHHHEEEEE
T ss_pred             EECcHHHHHhhccCCCCCEEEECCCCcc--ccchhhh---------------------------HHHHHHHHHHhcCCCc
Confidence            223433222  46789999999655554  2232221                           0138888888999999


Q ss_pred             eEEEEecc
Q 043411          207 RMFLTFLG  214 (242)
Q Consensus       207 ~lvl~~~g  214 (242)
                      +|++....
T Consensus       195 vlv~~~~~  202 (317)
T 3gjy_A          195 LYVANCGD  202 (317)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEecC
Confidence            99998854

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.31  E-value=0.00023  Score=60.23  Aligned_cols=107  Identities=9%  Similarity=0.116  Sum_probs=59.9

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..|+.+...+              ++..+|+.-|+.. ..-...+      ..+......+--+..+.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~-~~~~~a~------~~~~~~g~~~~~i~~~~  115 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGL--------------ADNTTLTCIDPES-EHQRQAK------ALFREAGYSPSRVRFLL  115 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHS--------------CTTSEEEEECSCH-HHHHHHH------HHHHHTTCCGGGEEEEC
T ss_pred             CCCEEEEcCCchHHHHHHHHhC--------------CCCCEEEEEECCH-HHHHHHH------HHHHHcCCCcCcEEEEE
Confidence            3499999999999999876332              1246777777752 1111111      11111111101122344


Q ss_pred             ccccccc--CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          131 GSFYQRL--FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       131 gSFy~~l--~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      |+..+-+  ++++++|++++..   |     .                            .++..|++.-.+-|+|||++
T Consensus       116 gda~~~l~~~~~~~fD~V~~d~---~-----~----------------------------~~~~~~l~~~~~~LkpGG~l  159 (221)
T 3dr5_A          116 SRPLDVMSRLANDSYQLVFGQV---S-----P----------------------------MDLKALVDAAWPLLRRGGAL  159 (221)
T ss_dssp             SCHHHHGGGSCTTCEEEEEECC---C-----T----------------------------TTHHHHHHHHHHHEEEEEEE
T ss_pred             cCHHHHHHHhcCCCcCeEEEcC---c-----H----------------------------HHHHHHHHHHHHHcCCCcEE
Confidence            4554433  2468999998731   1     1                            11223666666788999999


Q ss_pred             EEEecc
Q 043411          209 FLTFLG  214 (242)
Q Consensus       209 vl~~~g  214 (242)
                      ++...-
T Consensus       160 v~dn~~  165 (221)
T 3dr5_A          160 VLADAL  165 (221)
T ss_dssp             EETTTT
T ss_pred             EEeCCC
Confidence            996553

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.31  E-value=0.00083  Score=57.96  Aligned_cols=103  Identities=17%  Similarity=0.227  Sum_probs=60.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.+.+           +   |..+++.-|+-. +.-...+..      +..... .--+..+
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~-----------~---~~~~v~~vD~s~-~~~~~a~~~------~~~~~~-~~~v~~~  169 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAV-----------G---SSGKVFAYEKRE-EFAKLAESN------LTKWGL-IERVTIK  169 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHT-----------T---TTCEEEEECCCH-HHHHHHHHH------HHHTTC-GGGEEEE
T ss_pred             CCCEEEEECCcCCHHHHHHHHHh-----------C---CCcEEEEEECCH-HHHHHHHHH------HHHcCC-CCCEEEE
Confidence            35699999999999988776332           1   246788778742 222221111      110000 0012234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+. +|++++|++++.        .|...                              .+|+.-.+-|+|||+++
T Consensus       170 ~~d~~~~-~~~~~~D~V~~~--------~~~~~------------------------------~~l~~~~~~L~pgG~l~  210 (277)
T 1o54_A          170 VRDISEG-FDEKDVDALFLD--------VPDPW------------------------------NYIDKCWEALKGGGRFA  210 (277)
T ss_dssp             CCCGGGC-CSCCSEEEEEEC--------CSCGG------------------------------GTHHHHHHHEEEEEEEE
T ss_pred             ECCHHHc-ccCCccCEEEEC--------CcCHH------------------------------HHHHHHHHHcCCCCEEE
Confidence            5576544 788899999972        23210                              15666667789999999


Q ss_pred             EEec
Q 043411          210 LTFL  213 (242)
Q Consensus       210 l~~~  213 (242)
                      +...
T Consensus       211 ~~~~  214 (277)
T 1o54_A          211 TVCP  214 (277)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            9774

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.30  E-value=0.00024  Score=63.33  Aligned_cols=118  Identities=13%  Similarity=0.094  Sum_probs=65.8

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHh-hhhcCCCCcee
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYER-IKKDKFGPCFI  126 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~-l~~~~~~~~f~  126 (242)
                      +++.+|+|+|||+|..+..+++               ..+..+++.-|+-. +.-.+.+. ++..... +.   .+++- 
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~---------------~~~~~~v~~vDid~-~~i~~ar~~~~~~~~~~~~---~~~v~-  135 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLK---------------HPTVEKAVMVDIDG-ELVEVAKRHMPEWHQGAFD---DPRAV-  135 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT---------------STTCCEEEEEESCH-HHHHHHHHHCHHHHTTGGG---CTTEE-
T ss_pred             CCCCeEEEEcCCcCHHHHHHHh---------------cCCCCEEEEEECCH-HHHHHHHHHhHhhcccccc---CCceE-
Confidence            4568999999999998876651               11235777777752 22222221 1111000 10   11211 


Q ss_pred             ecccccccccc-CCCCceeEEEcccceee-cccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043411          127 AGMLGSFYQRL-FPSRGINFIHSSYSVHW-LSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVS  204 (242)
Q Consensus       127 ~~vpgSFy~~l-~p~~svdl~~Ss~alhW-Ls~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~p  204 (242)
                       .+-++..+-+ .+++++|+|++....|| ++..+..+.                           ...|++.-.+-|+|
T Consensus       136 -~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~~~l~---------------------------~~~~l~~~~~~Lkp  187 (314)
T 1uir_A          136 -LVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLY---------------------------TVEFYRLVKAHLNP  187 (314)
T ss_dssp             -EEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGS---------------------------SHHHHHHHHHTEEE
T ss_pred             -EEEchHHHHHHhcCCCccEEEECCCCcccccCcchhcc---------------------------HHHHHHHHHHhcCC
Confidence             2233443222 14789999999887777 222122110                           12378788888999


Q ss_pred             CceEEEEecc
Q 043411          205 GGRMFLTFLG  214 (242)
Q Consensus       205 GG~lvl~~~g  214 (242)
                      ||+|++....
T Consensus       188 gG~lv~~~~~  197 (314)
T 1uir_A          188 GGVMGMQTGM  197 (314)
T ss_dssp             EEEEEEEEEE
T ss_pred             CcEEEEEccC
Confidence            9999997544

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.29  E-value=6.4e-05  Score=60.23  Aligned_cols=20  Identities=25%  Similarity=0.054  Sum_probs=16.8

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..++.++
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~   63 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAV   63 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHH
T ss_pred             CCCCEEEeCCccCHHHHHHH
Confidence            35799999999999988654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.29  E-value=0.00066  Score=57.84  Aligned_cols=37  Identities=16%  Similarity=0.057  Sum_probs=25.4

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      +.+|+|+|||+|..|+.+.+.+ +   ..       .+..+|+--|+-
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~-~---~~-------~~~~~V~gvD~s  118 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLT-K---IM-------GIDCQVIGIDRD  118 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHH-H---HT-------TCCCEEEEEESC
T ss_pred             CCEEEEEeCCCCHHHHHHHHhh-h---hc-------CCCCEEEEEeCC
Confidence            4699999999999999876432 1   11       123667777764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.25  E-value=0.0007  Score=60.62  Aligned_cols=103  Identities=9%  Similarity=0.020  Sum_probs=59.6

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ....+|+|+|||+|+.|..++...               +..+|+--|+-. +....-+..      .......++  ..
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~---------------~ga~V~gIDis~-~~l~~Ar~~------~~~~gl~~v--~~  176 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHV---------------YGMRVNVVEIEP-DIAELSRKV------IEGLGVDGV--NV  176 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHT---------------TCCEEEEEESSH-HHHHHHHHH------HHHHTCCSE--EE
T ss_pred             CCcCEEEEECCCccHHHHHHHHHc---------------cCCEEEEEECCH-HHHHHHHHH------HHhcCCCCe--EE
Confidence            457899999999999886655221               135666666641 222222211      111111122  12


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +-|+..+  +|.+++|++++...      +|.                              ...+|+.-.+-|+|||+|
T Consensus       177 v~gDa~~--l~d~~FDvV~~~a~------~~d------------------------------~~~~l~el~r~LkPGG~L  218 (298)
T 3fpf_A          177 ITGDETV--IDGLEFDVLMVAAL------AEP------------------------------KRRVFRNIHRYVDTETRI  218 (298)
T ss_dssp             EESCGGG--GGGCCCSEEEECTT------CSC------------------------------HHHHHHHHHHHCCTTCEE
T ss_pred             EECchhh--CCCCCcCEEEECCC------ccC------------------------------HHHHHHHHHHHcCCCcEE
Confidence            3345544  36889999997443      122                              123777777888999999


Q ss_pred             EEEec
Q 043411          209 FLTFL  213 (242)
Q Consensus       209 vl~~~  213 (242)
                      ++...
T Consensus       219 vv~~~  223 (298)
T 3fpf_A          219 IYRTY  223 (298)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            99764

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.20  E-value=0.0012  Score=54.83  Aligned_cols=22  Identities=27%  Similarity=0.166  Sum_probs=18.3

Q ss_pred             CccEEeeecCCCCcchHHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVSK   71 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~   71 (242)
                      ...+|+|+|||+|..++.+.+.
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~   94 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDI   94 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHH
T ss_pred             CCCEEEEEeccCCHHHHHHHHH
Confidence            4569999999999999877643

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.18  E-value=0.00072  Score=57.26  Aligned_cols=35  Identities=17%  Similarity=-0.120  Sum_probs=26.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCC
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPG   99 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~   99 (242)
                      ..-+|+|+|||+|..++.+..        +       .+..+|+--|+..
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~--------~-------~~~~~v~GvD~s~   58 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAI--------N-------DQNTFYIGIDPVK   58 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHH--------T-------CTTEEEEEECSCC
T ss_pred             CCCEEEEEeccCcHHHHHHHH--------h-------CCCCEEEEEeCCH
Confidence            457999999999998877651        1       1457888888864

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.16  E-value=0.00058  Score=58.44  Aligned_cols=108  Identities=16%  Similarity=0.175  Sum_probs=60.7

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~  128 (242)
                      ++.+|+|+|||+|..|+.+.+.+              ++..+|+--|+... .      +...+..+..... .+  +..
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~--------------~~~~~v~~iD~~~~-~------~~~a~~~~~~~g~~~~--i~~  116 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLAL--------------PDDGQVITCDINEG-W------TKHAHPYWREAKQEHK--IKL  116 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTS--------------CTTCEEEEEECCCS-S------CCCSHHHHHHTTCTTT--EEE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhC--------------CCCCEEEEEECCHH-H------HHHHHHHHHHcCCCCc--EEE
Confidence            35799999999999999876322              12467777777531 1      1111111111111 12  122


Q ss_pred             cccccccccCC------CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043411          129 MLGSFYQRLFP------SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEI  202 (242)
Q Consensus       129 vpgSFy~~l~p------~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL  202 (242)
                      +-|+..+-+..      ++++|++++...        .                            .++..+|+.-.+-|
T Consensus       117 ~~gda~~~l~~~~~~~~~~~fD~V~~d~~--------~----------------------------~~~~~~l~~~~~~L  160 (242)
T 3r3h_A          117 RLGPALDTLHSLLNEGGEHQFDFIFIDAD--------K----------------------------TNYLNYYELALKLV  160 (242)
T ss_dssp             EESCHHHHHHHHHHHHCSSCEEEEEEESC--------G----------------------------GGHHHHHHHHHHHE
T ss_pred             EEcCHHHHHHHHhhccCCCCEeEEEEcCC--------h----------------------------HHhHHHHHHHHHhc
Confidence            33455433221      588999987321        1                            12223666667889


Q ss_pred             ccCceEEEEecccC
Q 043411          203 VSGGRMFLTFLGRS  216 (242)
Q Consensus       203 ~pGG~lvl~~~g~~  216 (242)
                      +|||+|++...-..
T Consensus       161 kpGG~lv~d~~~~~  174 (242)
T 3r3h_A          161 TPKGLIAIDNIFWD  174 (242)
T ss_dssp             EEEEEEEEECSSSS
T ss_pred             CCCeEEEEECCccC
Confidence            99999999766543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.14  E-value=0.00043  Score=60.20  Aligned_cols=129  Identities=9%  Similarity=-0.014  Sum_probs=65.3

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..|..+.+..             . ...+|+-.|+...=    .+.+   +..+......+  +..+.
T Consensus        84 g~~VLDlgaG~G~~t~~la~~~-------------~-~~~~v~avD~~~~~----l~~~---~~~~~~~g~~~--v~~~~  140 (274)
T 3ajd_A           84 DDFILDMCAAPGGKTTHLAQLM-------------K-NKGTIVAVEISKTR----TKAL---KSNINRMGVLN--TIIIN  140 (274)
T ss_dssp             TCEEEETTCTTCHHHHHHHHHT-------------T-TCSEEEEEESCHHH----HHHH---HHHHHHTTCCS--EEEEE
T ss_pred             cCEEEEeCCCccHHHHHHHHHc-------------C-CCCEEEEECCCHHH----HHHH---HHHHHHhCCCc--EEEEe
Confidence            4699999999999998776322             0 13678888875211    1111   11111111112  12233


Q ss_pred             cccccccC----CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          131 GSFYQRLF----PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       131 gSFy~~l~----p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      +++.+-..    +.+++|+|++        +.|+.-.   |.+.  + .+ .....-......+...+|+.-.+-|+|||
T Consensus       141 ~D~~~~~~~~~~~~~~fD~Vl~--------d~Pcs~~---g~~~--~-~p-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  205 (274)
T 3ajd_A          141 ADMRKYKDYLLKNEIFFDKILL--------DAPCSGN---IIKD--K-NR-NVSEEDIKYCSLRQKELIDIGIDLLKKDG  205 (274)
T ss_dssp             SCHHHHHHHHHHTTCCEEEEEE--------EECCC-------------------HHHHTGGGTCHHHHHHHHHHHEEEEE
T ss_pred             CChHhcchhhhhccccCCEEEE--------cCCCCCC---cccc--c-CC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            45432222    3678999987        3333211   0000  0 00 00000011112344568888888899999


Q ss_pred             eEEEEecccCC
Q 043411          207 RMFLTFLGRSI  217 (242)
Q Consensus       207 ~lvl~~~g~~~  217 (242)
                      +|++++.....
T Consensus       206 ~lv~stcs~~~  216 (274)
T 3ajd_A          206 ELVYSTCSMEV  216 (274)
T ss_dssp             EEEEEESCCCT
T ss_pred             EEEEEECCCCh
Confidence            99999876543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.14  E-value=0.00043  Score=57.35  Aligned_cols=34  Identities=15%  Similarity=0.180  Sum_probs=24.9

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      ..+|+|+|||+|..|+.+.+.+              ++..+|+.-|..
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~   98 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLAL--------------PKDGTLITCDVD   98 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTC--------------CTTCEEEEEESC
T ss_pred             CCEEEEeCCcchHHHHHHHHhC--------------CCCCEEEEEeCC
Confidence            4699999999999998776221              124677777775

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.13  E-value=0.0019  Score=53.93  Aligned_cols=101  Identities=14%  Similarity=0.114  Sum_probs=57.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~  128 (242)
                      ...+|+|+|||+|..++.+.+.                 ..+++.-|+.. +.-...+      ........ .+  +..
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~-----------------~~~v~~vD~~~-~~~~~a~------~~~~~~~~~~~--~~~  144 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEV-----------------AGEVWTFEAVE-EFYKTAQ------KNLKKFNLGKN--VKF  144 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH-----------------SSEEEEECSCH-HHHHHHH------HHHHHTTCCTT--EEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHh-----------------CCEEEEEecCH-HHHHHHH------HHHHHcCCCCc--EEE
Confidence            3579999999999988877532                 14566666642 1111111      11111110 11  223


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+.+++++++|++++.        .|..                              ..+|+.-.+-|+|||++
T Consensus       145 ~~~d~~~~~~~~~~~D~v~~~--------~~~~------------------------------~~~l~~~~~~L~~gG~l  186 (248)
T 2yvl_A          145 FNVDFKDAEVPEGIFHAAFVD--------VREP------------------------------WHYLEKVHKSLMEGAPV  186 (248)
T ss_dssp             ECSCTTTSCCCTTCBSEEEEC--------SSCG------------------------------GGGHHHHHHHBCTTCEE
T ss_pred             EEcChhhcccCCCcccEEEEC--------CcCH------------------------------HHHHHHHHHHcCCCCEE
Confidence            445665543377899999972        2211                              01555666778999999


Q ss_pred             EEEecc
Q 043411          209 FLTFLG  214 (242)
Q Consensus       209 vl~~~g  214 (242)
                      ++....
T Consensus       187 ~~~~~~  192 (248)
T 2yvl_A          187 GFLLPT  192 (248)
T ss_dssp             EEEESS
T ss_pred             EEEeCC
Confidence            998754

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.12  E-value=0.002  Score=60.13  Aligned_cols=129  Identities=14%  Similarity=0.118  Sum_probs=66.9

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+|||+|..|..+.+.+             . ...+|+-+|....=...    +   +..+......++  ..+.
T Consensus       260 g~~VLDlgaG~G~~t~~la~~~-------------~-~~~~v~a~D~s~~~l~~----~---~~~~~~~g~~~v--~~~~  316 (450)
T 2yxl_A          260 GETVVDLAAAPGGKTTHLAELM-------------K-NKGKIYAFDVDKMRMKR----L---KDFVKRMGIKIV--KPLV  316 (450)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHT-------------T-TCSEEEEECSCHHHHHH----H---HHHHHHTTCCSE--EEEC
T ss_pred             cCEEEEeCCCccHHHHHHHHHc-------------C-CCCEEEEEcCCHHHHHH----H---HHHHHHcCCCcE--EEEE
Confidence            4699999999999999876332             0 12678888876211111    1   111111111222  2233


Q ss_pred             ccccccc--CCCCceeEEEc---ccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          131 GSFYQRL--FPSRGINFIHS---SYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       131 gSFy~~l--~p~~svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      +++..-.  ++++++|+|++   ++...-+.+.|...       |.  .++..+     ......-..+|+.-.+-|+||
T Consensus       317 ~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~-------~~--~~~~~~-----~~l~~~q~~iL~~a~~~LkpG  382 (450)
T 2yxl_A          317 KDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELR-------WR--LREDKI-----NEMSQLQRELLESAARLVKPG  382 (450)
T ss_dssp             SCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHH-------HH--CCTTSH-----HHHHHHHHHHHHHHHTTEEEE
T ss_pred             cChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhh-------hh--CCHHHH-----HHHHHHHHHHHHHHHHhcCCC
Confidence            4443221  55588999996   22222222333210       00  011111     111112245787778889999


Q ss_pred             ceEEEEecccC
Q 043411          206 GRMFLTFLGRS  216 (242)
Q Consensus       206 G~lvl~~~g~~  216 (242)
                      |+|+++++...
T Consensus       383 G~lvy~tcs~~  393 (450)
T 2yxl_A          383 GRLLYTTCSIF  393 (450)
T ss_dssp             EEEEEEESCCC
T ss_pred             cEEEEEeCCCC
Confidence            99999887654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.11  E-value=0.0027  Score=57.13  Aligned_cols=119  Identities=10%  Similarity=0.025  Sum_probs=64.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      +..+|+|+|||+|..++.+..        .    +     .+|+..|+-. +.-...+.      ........+--+..+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~--------~----g-----a~V~~VD~s~-~al~~a~~------n~~~~gl~~~~v~~i  208 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAA--------A----G-----AEVTHVDASK-KAIGWAKE------NQVLAGLEQAPIRWI  208 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHH--------T----T-----CEEEEECSCH-HHHHHHHH------HHHHHTCTTSCEEEE
T ss_pred             CCCcEEEcccccCHHHHHHHH--------c----C-----CEEEEEECCH-HHHHHHHH------HHHHcCCCccceEEE
Confidence            346999999999999987752        1    1     2778888752 11111111      111111111001123


Q ss_pred             ccccccccC----CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          130 LGSFYQRLF----PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       130 pgSFy~~l~----p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      -++..+-+.    ..+++|+|++        +.|.--...++.++               ...+|+..+|+.-.+-|+||
T Consensus       209 ~~D~~~~l~~~~~~~~~fD~Ii~--------dPP~~~~~~~~~~~---------------~~~~~~~~ll~~~~~~Lkpg  265 (332)
T 2igt_A          209 CEDAMKFIQREERRGSTYDIILT--------DPPKFGRGTHGEVW---------------QLFDHLPLMLDICREILSPK  265 (332)
T ss_dssp             CSCHHHHHHHHHHHTCCBSEEEE--------CCCSEEECTTCCEE---------------EHHHHHHHHHHHHHHTBCTT
T ss_pred             ECcHHHHHHHHHhcCCCceEEEE--------CCccccCCchHHHH---------------HHHHHHHHHHHHHHHhcCcC
Confidence            335543221    1568999998        22321100011121               12356677998888999999


Q ss_pred             ceEEEEeccc
Q 043411          206 GRMFLTFLGR  215 (242)
Q Consensus       206 G~lvl~~~g~  215 (242)
                      |++++.....
T Consensus       266 G~lli~~~~~  275 (332)
T 2igt_A          266 ALGLVLTAYS  275 (332)
T ss_dssp             CCEEEEEECC
T ss_pred             cEEEEEECCC
Confidence            9988877654

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.09  E-value=0.00028  Score=62.92  Aligned_cols=20  Identities=30%  Similarity=0.353  Sum_probs=17.3

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..|..+.
T Consensus        82 ~g~~VLDlGcG~G~~s~~la  101 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCG  101 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHH
Confidence            34799999999999988776

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.06  E-value=0.0012  Score=57.68  Aligned_cols=20  Identities=30%  Similarity=0.398  Sum_probs=17.1

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..|..+.
T Consensus        74 ~g~~VLDlGcGtG~~s~~la   93 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAA   93 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHH
T ss_pred             CCCEEEEeCcCCCHHHHHHH
Confidence            45799999999999887765

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.05  E-value=0.0019  Score=57.36  Aligned_cols=109  Identities=13%  Similarity=0.162  Sum_probs=58.5

Q ss_pred             CCccEEeeecCCCCcch----HHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCc
Q 043411           49 PGCFNVADLGCSSGPNT----LLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPC  124 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns----~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~  124 (242)
                      +...+|+|+|||+|.+.    ..+.        ++      -++..+|+-.|+-..        ++           +-.
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs~~~a--------~~------~~~~~~V~gvDis~~--------v~-----------~v~  108 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGTAVLR--------QW------LPTGTLLVDSDLNDF--------VS-----------DAD  108 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHHHHH--------HH------SCTTCEEEEEESSCC--------BC-----------SSS
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHH--------HH------cCCCCEEEEEECCCC--------CC-----------CCE
Confidence            34579999999884442    2111        11      112467888888642        11           112


Q ss_pred             eeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043411          125 FIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVS  204 (242)
Q Consensus       125 f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~p  204 (242)
                      |.  +-+++.+ +.+++++|+++|..+.+|.-....   ++...                   ...+...|+.-.+-|+|
T Consensus       109 ~~--i~gD~~~-~~~~~~fD~Vvsn~~~~~~g~~~~---d~~~~-------------------~~l~~~~l~~a~r~Lkp  163 (290)
T 2xyq_A          109 ST--LIGDCAT-VHTANKWDLIISDMYDPRTKHVTK---ENDSK-------------------EGFFTYLCGFIKQKLAL  163 (290)
T ss_dssp             EE--EESCGGG-CCCSSCEEEEEECCCCCC---CCS---CCCCC-------------------CTHHHHHHHHHHHHEEE
T ss_pred             EE--EECcccc-CCccCcccEEEEcCCccccccccc---cccch-------------------HHHHHHHHHHHHHhcCC
Confidence            20  3346643 333478999999765444211100   00000                   01233466666777899


Q ss_pred             CceEEEEeccc
Q 043411          205 GGRMFLTFLGR  215 (242)
Q Consensus       205 GG~lvl~~~g~  215 (242)
                      ||+|++..+..
T Consensus       164 GG~~v~~~~~~  174 (290)
T 2xyq_A          164 GGSIAVKITEH  174 (290)
T ss_dssp             EEEEEEEECSS
T ss_pred             CcEEEEEEecc
Confidence            99999977644

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.04  E-value=0.0039  Score=54.77  Aligned_cols=20  Identities=30%  Similarity=0.396  Sum_probs=17.2

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..|..+.
T Consensus        82 ~g~~VLDlGcGtG~~s~~la  101 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAA  101 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHH
T ss_pred             CCCEEEEeccCCCHHHHHHH
Confidence            45799999999999988765

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.04  E-value=0.0024  Score=60.49  Aligned_cols=130  Identities=13%  Similarity=0.090  Sum_probs=68.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..|+.+.+.+              .+.-+|+-+|+-..=...+-+       .+......++  ..+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~--------------~~~g~V~avDis~~~l~~~~~-------n~~r~g~~nv--~~~  173 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARM--------------NNEGAILANEFSASRVKVLHA-------NISRCGISNV--ALT  173 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHT--------------TTCSEEEEECSSHHHHHHHHH-------HHHHHTCCSE--EEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhC--------------CCCCEEEEEECCHHHHHHHHH-------HHHHcCCCcE--EEE
Confidence            34799999999999999876432              023678888886311111111       1111111222  122


Q ss_pred             ccccccccC-CCCceeEEEc---ccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          130 LGSFYQRLF-PSRGINFIHS---SYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       130 pgSFy~~l~-p~~svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      -++...-.. +++++|.|++   ++...-+.+.|....         ..++..     .....+.-..+|+.-.+-|+||
T Consensus       174 ~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~---------~~~~~~-----~~~l~~~q~~iL~~a~~~LkpG  239 (479)
T 2frx_A          174 HFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALK---------NWSPES-----NQEIAATQRELIDSAFHALRPG  239 (479)
T ss_dssp             CCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSS---------SCCHHH-----HHHHHHHHHHHHHHHHHHEEEE
T ss_pred             eCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHh---------hcCHhH-----HHHHHHHHHHHHHHHHHhcCCC
Confidence            334322111 4678999987   233333333333111         011111     1222223345787778889999


Q ss_pred             ceEEEEecccC
Q 043411          206 GRMFLTFLGRS  216 (242)
Q Consensus       206 G~lvl~~~g~~  216 (242)
                      |+|+.+++...
T Consensus       240 G~LvysTcs~~  250 (479)
T 2frx_A          240 GTLVYSTCTLN  250 (479)
T ss_dssp             EEEEEEESCCS
T ss_pred             CEEEEecccCC
Confidence            99999987654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.97  E-value=0.0014  Score=57.92  Aligned_cols=115  Identities=10%  Similarity=-0.029  Sum_probs=58.9

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceee
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIA  127 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~  127 (242)
                      +.+.+|+|+|||+|..+..+++.               .+..+|+.-|+-. +.-.+.+. ++.+...+.   .+++  .
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~---------------~~~~~v~~vDid~-~~~~~a~~~~~~~~~~~~---~~~v--~  147 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKH---------------DSVEKAILCEVDG-LVIEAARKYLKQTSCGFD---DPRA--E  147 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTS---------------TTCSEEEEEESCH-HHHHHHHHHCHHHHGGGG---CTTE--E
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhc---------------CCCCEEEEEECCH-HHHHHHHHHhHhhccccC---CCce--E
Confidence            34689999999999988766511               1236777777742 22222221 111111110   1121  1


Q ss_pred             cccccccccc-CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          128 GMLGSFYQRL-FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       128 ~vpgSFy~~l-~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      .+-++..+-+ .+++++|+|++...-+|... +..+                           ....|++.-.+-|+|||
T Consensus       148 ~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~-~~~l---------------------------~~~~~l~~~~~~LkpgG  199 (296)
T 1inl_A          148 IVIANGAEYVRKFKNEFDVIIIDSTDPTAGQ-GGHL---------------------------FTEEFYQACYDALKEDG  199 (296)
T ss_dssp             EEESCHHHHGGGCSSCEEEEEEEC-----------C---------------------------CSHHHHHHHHHHEEEEE
T ss_pred             EEECcHHHHHhhCCCCceEEEEcCCCcccCc-hhhh---------------------------hHHHHHHHHHHhcCCCc
Confidence            2233432222 24678999998544444321 1100                           01237777778899999


Q ss_pred             eEEEEe
Q 043411          207 RMFLTF  212 (242)
Q Consensus       207 ~lvl~~  212 (242)
                      +|++..
T Consensus       200 ~lv~~~  205 (296)
T 1inl_A          200 VFSAET  205 (296)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999974

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.97  E-value=0.00091  Score=60.45  Aligned_cols=113  Identities=13%  Similarity=0.046  Sum_probs=61.9

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceee
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIA  127 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~  127 (242)
                      +.+.+|+|+|||+|..++.+++               ..+..+|+.-|+-. +.-.+.+. ++.....+.   .++  +.
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~---------------~~~~~~V~~VDis~-~~l~~Ar~~~~~~~~gl~---~~r--v~  177 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVAR---------------HASIEQIDMCEIDK-MVVDVSKQFFPDVAIGYE---DPR--VN  177 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTT---------------CTTCCEEEEEESCH-HHHHHHHHHCHHHHGGGG---STT--EE
T ss_pred             CCCCEEEEECCCccHHHHHHHH---------------cCCCCEEEEEECCH-HHHHHHHHHHHhhccccC---CCc--EE
Confidence            4568999999999998876651               11346788888752 22222221 111100110   112  12


Q ss_pred             cccccccccc--CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          128 GMLGSFYQRL--FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       128 ~vpgSFy~~l--~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      .+-++..+-+  ++++++|+|++...-+|-  .+..+                           ....|++.-.+-|+||
T Consensus       178 ~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~--~~~~l---------------------------~~~~~l~~~~~~Lkpg  228 (334)
T 1xj5_A          178 LVIGDGVAFLKNAAEGSYDAVIVDSSDPIG--PAKEL---------------------------FEKPFFQSVARALRPG  228 (334)
T ss_dssp             EEESCHHHHHHTSCTTCEEEEEECCCCTTS--GGGGG---------------------------GSHHHHHHHHHHEEEE
T ss_pred             EEECCHHHHHHhccCCCccEEEECCCCccC--cchhh---------------------------hHHHHHHHHHHhcCCC
Confidence            2334543322  356899999985443220  00100                           0123777777888999


Q ss_pred             ceEEEE
Q 043411          206 GRMFLT  211 (242)
Q Consensus       206 G~lvl~  211 (242)
                      |+|++.
T Consensus       229 G~lv~~  234 (334)
T 1xj5_A          229 GVVCTQ  234 (334)
T ss_dssp             EEEEEE
T ss_pred             cEEEEe
Confidence            999986

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.95  E-value=0.0014  Score=58.24  Aligned_cols=115  Identities=14%  Similarity=0.059  Sum_probs=61.1

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceee
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIA  127 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~  127 (242)
                      +++.+|+|+|||+|..++.+++               ..+..+++.-|+-. +.-.+.+. ++.....+.   .+++-  
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~---------------~~~~~~v~~vDid~-~~i~~ar~~~~~~~~~~~---~~rv~--  152 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVK---------------HPSVESVVQCEIDE-DVIQVSKKFLPGMAIGYS---SSKLT--  152 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTT---------------CTTCCEEEEEESCH-HHHHHHHHHCHHHHGGGG---CTTEE--
T ss_pred             CCCCEEEEECCCchHHHHHHHH---------------cCCCCEEEEEECCH-HHHHHHHHHhHHhhcccC---CCcEE--
Confidence            4568999999999998886651               11346777778742 22222221 211101110   11211  


Q ss_pred             cccccccccc-CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          128 GMLGSFYQRL-FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       128 ~vpgSFy~~l-~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      .+-++..+-+ .+++++|+|++-...+|-   |..      .                    .....|++.-.+-|+|||
T Consensus       153 v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~---~~~------~--------------------l~~~~~l~~~~~~LkpgG  203 (304)
T 2o07_A          153 LHVGDGFEFMKQNQDAFDVIITDSSDPMG---PAE------S--------------------LFKESYYQLMKTALKEDG  203 (304)
T ss_dssp             EEESCHHHHHHTCSSCEEEEEEECC----------------------------------------CHHHHHHHHHEEEEE
T ss_pred             EEECcHHHHHhhCCCCceEEEECCCCCCC---cch------h--------------------hhHHHHHHHHHhccCCCe
Confidence            2233443222 246889999995554441   110      0                    011237777788899999


Q ss_pred             eEEEEec
Q 043411          207 RMFLTFL  213 (242)
Q Consensus       207 ~lvl~~~  213 (242)
                      +|++...
T Consensus       204 ~lv~~~~  210 (304)
T 2o07_A          204 VLCCQGE  210 (304)
T ss_dssp             EEEEEEE
T ss_pred             EEEEecC
Confidence            9999764

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.93  E-value=0.0011  Score=58.05  Aligned_cols=21  Identities=24%  Similarity=0.219  Sum_probs=17.4

Q ss_pred             CCccEEeeecCCCCcchHHHH
Q 043411           49 PGCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~   69 (242)
                      +.+.+|+|+|||+|..+..++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~   94 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVL   94 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHT
T ss_pred             CCCCeEEEEcCCcCHHHHHHH
Confidence            356799999999999887664

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.91  E-value=0.0013  Score=58.90  Aligned_cols=114  Identities=10%  Similarity=-0.016  Sum_probs=61.0

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceee
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIA  127 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~  127 (242)
                      +++.+|+|+|||+|..+..+.+               ..+..+++.-|+-. +.-.+.+. ++.....+.   .++  +.
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~---------------~~~~~~v~~vDis~-~~l~~ar~~~~~~~~~~~---~~~--v~  173 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCK---------------YKSVENIDICEIDE-TVIEVSKIYFKNISCGYE---DKR--VN  173 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTT---------------CTTCCEEEEEESCH-HHHHHHHHHCTTTSGGGG---STT--EE
T ss_pred             CCCCEEEEEcCCccHHHHHHHH---------------cCCCCEEEEEECCH-HHHHHHHHHHHhhccccC---CCc--EE
Confidence            3568999999999998876641               11346777777752 22222221 111000010   112  12


Q ss_pred             cccccccccc-CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          128 GMLGSFYQRL-FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       128 ~vpgSFy~~l-~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      .+-++..+-+ .+++++|+|++...-+|   -|..      .             .|.       ..|++.-.+-|+|||
T Consensus       174 ~~~~D~~~~l~~~~~~fDvIi~d~~~p~---~~~~------~-------------l~~-------~~~l~~~~~~LkpgG  224 (321)
T 2pt6_A          174 VFIEDASKFLENVTNTYDVIIVDSSDPI---GPAE------T-------------LFN-------QNFYEKIYNALKPNG  224 (321)
T ss_dssp             EEESCHHHHHHHCCSCEEEEEEECCCSS---SGGG------G-------------GSS-------HHHHHHHHHHEEEEE
T ss_pred             EEEccHHHHHhhcCCCceEEEECCcCCC---Ccch------h-------------hhH-------HHHHHHHHHhcCCCc
Confidence            2333443322 14678999998543333   0110      0             000       237777778899999


Q ss_pred             eEEEEe
Q 043411          207 RMFLTF  212 (242)
Q Consensus       207 ~lvl~~  212 (242)
                      ++++..
T Consensus       225 ~lv~~~  230 (321)
T 2pt6_A          225 YCVAQC  230 (321)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999975

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=96.90  E-value=0.0022  Score=60.68  Aligned_cols=75  Identities=16%  Similarity=0.205  Sum_probs=41.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~  128 (242)
                      +..+|+|+|||+|..++.+.        +.        +..+|+.-|+.  ..-...+      ........ .+  +..
T Consensus       158 ~~~~VLDiGcGtG~la~~la--------~~--------~~~~V~gvD~s--~~l~~A~------~~~~~~gl~~~--v~~  211 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAA--------QA--------GARKIYAVEAS--TMAQHAE------VLVKSNNLTDR--IVV  211 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHH--------HT--------TCSEEEEEECH--HHHHHHH------HHHHHTTCTTT--EEE
T ss_pred             CCCEEEEecCcccHHHHHHH--------Hc--------CCCEEEEEEcH--HHHHHHH------HHHHHcCCCCc--EEE
Confidence            35799999999999777553        11        23577777764  2111111      11111111 11  223


Q ss_pred             cccccccccCCCCceeEEEcccc
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYS  151 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~a  151 (242)
                      +.+++.+ +-+++++|+|+|...
T Consensus       212 ~~~d~~~-~~~~~~fD~Ivs~~~  233 (480)
T 3b3j_A          212 IPGKVEE-VSLPEQVDIIISEPM  233 (480)
T ss_dssp             EESCTTT-CCCSSCEEEEECCCC
T ss_pred             EECchhh-CccCCCeEEEEEeCc
Confidence            4556644 333468999999544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.87  E-value=0.0013  Score=62.15  Aligned_cols=129  Identities=13%  Similarity=0.080  Sum_probs=68.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..|+.+.+.+             . ..-+|+-+|+-..-...+-       ..+......   +..+
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~-------------~-~~g~V~AvDis~~~l~~a~-------~n~~r~G~~---v~~~  156 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARM-------------G-GKGLLLANEVDGKRVRGLL-------ENVERWGAP---LAVT  156 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHT-------------T-TCSEEEEECSCHHHHHHHH-------HHHHHHCCC---CEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhC-------------C-CCCEEEEEECCHHHHHHHH-------HHHHHcCCe---EEEE
Confidence            35799999999999999887433             0 1357888887621111111       111111111   2233


Q ss_pred             cccccccc-CCCCceeEEEc---ccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          130 LGSFYQRL-FPSRGINFIHS---SYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       130 pgSFy~~l-~p~~svdl~~S---s~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      -++..+-. ++++++|+|++   ++..--+.+.|...       +  ..++..+     ....+.-..+|+.-.+-|+||
T Consensus       157 ~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~-------~--~~~~~~~-----~~l~~~Q~~iL~~a~~~LkpG  222 (464)
T 3m6w_A          157 QAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAA-------R--HWGPSAP-----KRMAEVQKALLAQASRLLGPG  222 (464)
T ss_dssp             CSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSG-------G--GCCTTHH-----HHHHHHHHHHHHHHHTTEEEE
T ss_pred             ECCHHHhhhhccccCCEEEECCCcCCccccccChHHh-------h--hcCHHHH-----HHHHHHHHHHHHHHHHhcCCC
Confidence            34543211 24678999985   11222222222211       1  1122222     122233355888888899999


Q ss_pred             ceEEEEecccC
Q 043411          206 GRMFLTFLGRS  216 (242)
Q Consensus       206 G~lvl~~~g~~  216 (242)
                      |+|+.+++...
T Consensus       223 G~LvysTCs~~  233 (464)
T 3m6w_A          223 GVLVYSTCTFA  233 (464)
T ss_dssp             EEEEEEESCCC
T ss_pred             cEEEEEeccCc
Confidence            99999887643

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.87  E-value=0.0013  Score=57.57  Aligned_cols=115  Identities=10%  Similarity=-0.034  Sum_probs=61.5

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceee
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIA  127 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~  127 (242)
                      +++.+|+|+|||+|..+..+.+               ..+..++..-|+-. +.-.+.+. ++.....+.   .+++  .
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~---------------~~~~~~v~~vDid~-~~i~~a~~~~~~~~~~~~---~~~v--~  135 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCK---------------YKSVENIDICEIDE-TVIEVSKIYFKNISCGYE---DKRV--N  135 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTT---------------CTTCCEEEEEESCH-HHHHHHHHHCTTTSGGGG---STTE--E
T ss_pred             CCCCeEEEEeCCcCHHHHHHHH---------------cCCCCEEEEEECCH-HHHHHHHHHhHHhccccC---CCcE--E
Confidence            4568999999999998776641               11346777777742 22222221 111100010   1121  1


Q ss_pred             ccccccccccC-CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          128 GMLGSFYQRLF-PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       128 ~vpgSFy~~l~-p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      .+-++..+-+- .++++|+|++-.+.+|..  +..+                    |.       ..|++.-.+-|+|||
T Consensus       136 ~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~--~~~l--------------------~~-------~~~l~~~~~~L~pgG  186 (283)
T 2i7c_A          136 VFIEDASKFLENVTNTYDVIIVDSSDPIGP--AETL--------------------FN-------QNFYEKIYNALKPNG  186 (283)
T ss_dssp             EEESCHHHHHHHCCSCEEEEEEECCCTTTG--GGGG--------------------SS-------HHHHHHHHHHEEEEE
T ss_pred             EEECChHHHHHhCCCCceEEEEcCCCCCCc--chhh--------------------hH-------HHHHHHHHHhcCCCc
Confidence            12334322221 267899999865444411  1100                    00       237888888899999


Q ss_pred             eEEEEec
Q 043411          207 RMFLTFL  213 (242)
Q Consensus       207 ~lvl~~~  213 (242)
                      +|++...
T Consensus       187 ~lv~~~~  193 (283)
T 2i7c_A          187 YCVAQCE  193 (283)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9998743

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=96.86  E-value=0.0028  Score=55.05  Aligned_cols=106  Identities=13%  Similarity=-0.039  Sum_probs=61.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCC-ceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGP-CFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~-~f~~~  128 (242)
                      ..-+|+|+|||+|..|+.+....               +..+|+-.|+-. +.-...+      .....++..+ .|   
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~~---------------~~~~V~~vD~s~-~av~~a~------~n~~~n~l~~~~~---  173 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKYS---------------KPKLVYAIEKNP-TAYHYLC------ENIKLNKLNNVIP---  173 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHT---------------CCSEEEEEECCH-HHHHHHH------HHHHHTTCSSEEE---
T ss_pred             CCCEEEEecCcCCHHHHHHHHhC---------------CCCEEEEEeCCH-HHHHHHH------HHHHHcCCCCEEE---
Confidence            45799999999999999876321               135777777741 1111111      1111112122 23   


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.++..+- -..+++|++++.        .|..                             ...+|..-.+-|+|||++
T Consensus       174 ~~~d~~~~-~~~~~~D~Vi~d--------~p~~-----------------------------~~~~l~~~~~~LkpgG~l  215 (272)
T 3a27_A          174 ILADNRDV-ELKDVADRVIMG--------YVHK-----------------------------THKFLDKTFEFLKDRGVI  215 (272)
T ss_dssp             EESCGGGC-CCTTCEEEEEEC--------CCSS-----------------------------GGGGHHHHHHHEEEEEEE
T ss_pred             EECChHHc-CccCCceEEEEC--------Cccc-----------------------------HHHHHHHHHHHcCCCCEE
Confidence            33455332 115689999873        2221                             112566666778999999


Q ss_pred             EEEecccCCC
Q 043411          209 FLTFLGRSIA  218 (242)
Q Consensus       209 vl~~~g~~~~  218 (242)
                      +++.....+.
T Consensus       216 ~~s~~~~~~~  225 (272)
T 3a27_A          216 HYHETVAEKI  225 (272)
T ss_dssp             EEEEEEEGGG
T ss_pred             EEEEcCcccc
Confidence            9999877553

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.86  E-value=0.0035  Score=57.11  Aligned_cols=116  Identities=11%  Similarity=0.035  Sum_probs=66.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ..-+|+|+|||+|..|+.+...                 ..+|+..|+-. +.-...      +.....+...+  +..+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-----------------~~~v~~vD~s~-~~~~~a------~~n~~~n~~~~--~~~~  262 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-----------------FREVVAVDSSA-EALRRA------EENARLNGLGN--VRVL  262 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-----------------EEEEEEEESCH-HHHHHH------HHHHHHTTCTT--EEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-----------------CCEEEEEECCH-HHHHHH------HHHHHHcCCCC--ceEE
Confidence            3479999999999999877632                 14566666641 111111      11111111222  2233


Q ss_pred             ccccccccC----CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          130 LGSFYQRLF----PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       130 pgSFy~~l~----p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      .++..+-+.    ..+++|++++        +.|.-..           +...     .....+++..++..-.+-|+||
T Consensus       263 ~~d~~~~~~~~~~~~~~fD~Ii~--------dpP~~~~-----------~~~~-----~~~~~~~~~~~l~~~~~~Lkpg  318 (382)
T 1wxx_A          263 EANAFDLLRRLEKEGERFDLVVL--------DPPAFAK-----------GKKD-----VERAYRAYKEVNLRAIKLLKEG  318 (382)
T ss_dssp             ESCHHHHHHHHHHTTCCEEEEEE--------CCCCSCC-----------STTS-----HHHHHHHHHHHHHHHHHTEEEE
T ss_pred             ECCHHHHHHHHHhcCCCeeEEEE--------CCCCCCC-----------ChhH-----HHHHHHHHHHHHHHHHHhcCCC
Confidence            445533222    2578999986        4443111           1111     2345577888999999999999


Q ss_pred             ceEEEEeccc
Q 043411          206 GRMFLTFLGR  215 (242)
Q Consensus       206 G~lvl~~~g~  215 (242)
                      |+|+++....
T Consensus       319 G~l~~~~~~~  328 (382)
T 1wxx_A          319 GILATASCSH  328 (382)
T ss_dssp             EEEEEEECCT
T ss_pred             CEEEEEECCC
Confidence            9999987643

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.85  E-value=0.0017  Score=53.85  Aligned_cols=35  Identities=17%  Similarity=0.198  Sum_probs=25.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      ...+|+|+|||+|..++.+.+.+              ++..+++.-|+.
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~  103 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALAL--------------PADGRVVTCEVD  103 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTS--------------CTTCEEEEEESC
T ss_pred             CCCEEEEEcCCccHHHHHHHHhC--------------CCCCEEEEEECC
Confidence            35799999999999988776221              113677777874

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.85  E-value=0.00099  Score=56.56  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=25.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      ++.+|+|+|||+|..|+.+.+.+              ++..+++..|..
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~--------------~~~~~v~~iD~~  104 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSI--------------PDDGKITAIDFD  104 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHS--------------CTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhC--------------CCCCEEEEEECC
Confidence            45799999999999998876432              123677777764

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.82  E-value=0.00086  Score=57.51  Aligned_cols=35  Identities=17%  Similarity=0.234  Sum_probs=25.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      ++.+|+|+|||+|..|+.+...+              ++..+|+.-|..
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~--------------~~~~~v~~iD~s  113 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAI--------------PEDGKILAMDIN  113 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHS--------------CTTCEEEEEESC
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhC--------------CCCCEEEEEECC
Confidence            45799999999999999776332              123677877875

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=96.81  E-value=0.00043  Score=57.05  Aligned_cols=20  Identities=15%  Similarity=-0.100  Sum_probs=17.2

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..|+.+.
T Consensus        56 ~~~~vLdiG~G~G~~~~~la   75 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFA   75 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHH
T ss_pred             CCCEEEEEcCCccHHHHHHH
Confidence            35799999999999998776

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=96.79  E-value=0.01  Score=53.10  Aligned_cols=117  Identities=18%  Similarity=0.081  Sum_probs=65.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+....           +   |...++-.|.-. +.-...      +.........  .+..+
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a~~~-----------~---~~~~v~g~Di~~-~~i~~a------~~n~~~~g~~--~i~~~  259 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAASTL-----------G---PTSPVYAGDLDE-KRLGLA------REAALASGLS--WIRFL  259 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHHHHH-----------C---TTSCEEEEESCH-HHHHHH------HHHHHHTTCT--TCEEE
T ss_pred             CCCEEEeCCCCcCHHHHHHHHhh-----------C---CCceEEEEECCH-HHHHHH------HHHHHHcCCC--ceEEE
Confidence            35789999999999887765322           0   235677777651 111111      1111111111  22334


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      -+++.+-..|.+++|++++.--.+|..                 ...        ......+..+++.-.+-|+|||+++
T Consensus       260 ~~D~~~~~~~~~~~D~Ii~npPyg~r~-----------------~~~--------~~~~~~~~~~~~~~~~~LkpgG~l~  314 (354)
T 3tma_A          260 RADARHLPRFFPEVDRILANPPHGLRL-----------------GRK--------EGLFHLYWDFLRGALALLPPGGRVA  314 (354)
T ss_dssp             ECCGGGGGGTCCCCSEEEECCCSCC---------------------C--------HHHHHHHHHHHHHHHHTSCTTCEEE
T ss_pred             eCChhhCccccCCCCEEEECCCCcCcc-----------------CCc--------ccHHHHHHHHHHHHHHhcCCCcEEE
Confidence            557755555667789999832222200                 001        1223344568888888999999999


Q ss_pred             EEecc
Q 043411          210 LTFLG  214 (242)
Q Consensus       210 l~~~g  214 (242)
                      +.+..
T Consensus       315 i~t~~  319 (354)
T 3tma_A          315 LLTLR  319 (354)
T ss_dssp             EEESC
T ss_pred             EEeCC
Confidence            98763

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.79  E-value=0.0021  Score=57.16  Aligned_cols=21  Identities=24%  Similarity=0.265  Sum_probs=17.8

Q ss_pred             CccEEeeecCCCCcchHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVS   70 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~   70 (242)
                      ...+|+|+|||+|..++.+..
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~  125 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSK  125 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHH
Confidence            356999999999999987763

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.79  E-value=0.0024  Score=57.08  Aligned_cols=114  Identities=14%  Similarity=0.084  Sum_probs=59.6

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceee
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIA  127 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~  127 (242)
                      +.+.+|+|+|||+|..+..+++               ..+..+|+.-|+-. +.-.+.+. ++.....+   ..+++  .
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~---------------~~~~~~v~~vDid~-~~i~~Ar~~~~~~~~~~---~~~rv--~  165 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLK---------------HESVEKVTMCEIDE-MVIDVAKKFLPGMSCGF---SHPKL--D  165 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTT---------------CTTCCEEEEECSCH-HHHHHHHHHCTTTSGGG---GCTTE--E
T ss_pred             CCCCEEEEEcCCcCHHHHHHHH---------------cCCCCEEEEEECCH-HHHHHHHHHHHHhcccc---CCCCE--E
Confidence            3467999999999998876651               11346778778752 22222221 11100001   01121  1


Q ss_pred             ccccccccccC-CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          128 GMLGSFYQRLF-PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       128 ~vpgSFy~~l~-p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      .+-++..+-+- +++++|+|++...-+|   .|.      .             ..|.       ..|++.-.+-|+|||
T Consensus       166 ~~~~D~~~~l~~~~~~fD~Ii~d~~~~~---~~~------~-------------~l~t-------~~~l~~~~~~LkpgG  216 (314)
T 2b2c_A          166 LFCGDGFEFLKNHKNEFDVIITDSSDPV---GPA------E-------------SLFG-------QSYYELLRDALKEDG  216 (314)
T ss_dssp             EECSCHHHHHHHCTTCEEEEEECCC------------------------------------------HHHHHHHHEEEEE
T ss_pred             EEEChHHHHHHhcCCCceEEEEcCCCCC---Ccc------h-------------hhhH-------HHHHHHHHhhcCCCe
Confidence            23334432221 5788999998544333   011      0             0010       337777788899999


Q ss_pred             eEEEEe
Q 043411          207 RMFLTF  212 (242)
Q Consensus       207 ~lvl~~  212 (242)
                      +|++..
T Consensus       217 ~lv~~~  222 (314)
T 2b2c_A          217 ILSSQG  222 (314)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999975

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.72  E-value=0.0036  Score=54.58  Aligned_cols=114  Identities=12%  Similarity=0.108  Sum_probs=62.3

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceee
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIA  127 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~  127 (242)
                      +++.+|+|+|||+|..+..+++               ..+..+|..-|+-. +.-.+.+. ++.....+   ..++  +.
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~---------------~~~~~~v~~vEid~-~~v~~ar~~~~~~~~~~---~~~r--v~  132 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILK---------------HPSVKKATLVDIDG-KVIEYSKKFLPSIAGKL---DDPR--VD  132 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTT---------------CTTCSEEEEEESCH-HHHHHHHHHCHHHHTTT---TSTT--EE
T ss_pred             CCCCEEEEECCchHHHHHHHHh---------------CCCCceEEEEECCH-HHHHHHHHHhHhhcccc---CCCc--eE
Confidence            4568999999999988776541               11235677777742 33333322 21110011   0112  12


Q ss_pred             cccccccccc-CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          128 GMLGSFYQRL-FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       128 ~vpgSFy~~l-~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      .+-++..+-+ .+++++|+|++-..-+|.  .|..+       +    +                ..|++.-.+-|+|||
T Consensus       133 v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~--~~~~l-------~----~----------------~~~~~~~~~~L~pgG  183 (275)
T 1iy9_A          133 VQVDDGFMHIAKSENQYDVIMVDSTEPVG--PAVNL-------F----T----------------KGFYAGIAKALKEDG  183 (275)
T ss_dssp             EEESCSHHHHHTCCSCEEEEEESCSSCCS--CCCCC-------S----T----------------THHHHHHHHHEEEEE
T ss_pred             EEECcHHHHHhhCCCCeeEEEECCCCCCC--cchhh-------h----H----------------HHHHHHHHHhcCCCc
Confidence            2333443222 146789999996555442  11111       0    0                117777778899999


Q ss_pred             eEEEEe
Q 043411          207 RMFLTF  212 (242)
Q Consensus       207 ~lvl~~  212 (242)
                      +|++..
T Consensus       184 ~lv~~~  189 (275)
T 1iy9_A          184 IFVAQT  189 (275)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999975

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=96.72  E-value=0.013  Score=53.99  Aligned_cols=114  Identities=11%  Similarity=0.041  Sum_probs=63.7

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|..|+.+..        .    +   .  .|+-.|+-.. --...      +.....+....-+.   -
T Consensus       215 g~~VLDlg~GtG~~sl~~a~--------~----g---a--~V~avDis~~-al~~a------~~n~~~ng~~~~~~---~  267 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAAR--------K----G---A--YALAVDKDLE-ALGVL------DQAALRLGLRVDIR---H  267 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHH--------T----T---C--EEEEEESCHH-HHHHH------HHHHHHHTCCCEEE---E
T ss_pred             CCeEEEcccchhHHHHHHHH--------c----C---C--eEEEEECCHH-HHHHH------HHHHHHhCCCCcEE---E
Confidence            47999999999999987752        1    1   2  2777777620 00000      11111111122232   2


Q ss_pred             cccccccC-CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          131 GSFYQRLF-PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       131 gSFy~~l~-p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      ++..+-+- .++.+|+|++        +.|. ...          +...     .....+++..++..-.+-|+|||+|+
T Consensus       268 ~D~~~~l~~~~~~fD~Ii~--------dpP~-f~~----------~~~~-----~~~~~~~~~~ll~~a~~~LkpGG~Lv  323 (393)
T 4dmg_A          268 GEALPTLRGLEGPFHHVLL--------DPPT-LVK----------RPEE-----LPAMKRHLVDLVREALRLLAEEGFLW  323 (393)
T ss_dssp             SCHHHHHHTCCCCEEEEEE--------CCCC-CCS----------SGGG-----HHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred             ccHHHHHHHhcCCCCEEEE--------CCCc-CCC----------CHHH-----HHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            34433221 1334999987        2332 211          1111     34556788889999999999999999


Q ss_pred             EEeccc
Q 043411          210 LTFLGR  215 (242)
Q Consensus       210 l~~~g~  215 (242)
                      +.....
T Consensus       324 ~~s~s~  329 (393)
T 4dmg_A          324 LSSCSY  329 (393)
T ss_dssp             EEECCT
T ss_pred             EEECCC
Confidence            766554

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=96.68  E-value=0.0086  Score=52.36  Aligned_cols=98  Identities=14%  Similarity=0.160  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCch
Q 043411           32 AWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPD  111 (242)
Q Consensus        32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~  111 (242)
                      .+|.++.--..+...  +.+-+|+|+|||.|+.++..+                  +...++..|+-. +.-.+.+..  
T Consensus        89 rLp~ld~fY~~i~~~--~~p~~VLDlGCG~gpLal~~~------------------~~~~y~a~DId~-~~i~~ar~~--  145 (253)
T 3frh_A           89 RLAELDTLYDFIFSA--ETPRRVLDIACGLNPLALYER------------------GIASVWGCDIHQ-GLGDVITPF--  145 (253)
T ss_dssp             HGGGHHHHHHHHTSS--CCCSEEEEETCTTTHHHHHHT------------------TCSEEEEEESBH-HHHHHHHHH--
T ss_pred             HhhhHHHHHHHHhcC--CCCCeEEEecCCccHHHHHhc------------------cCCeEEEEeCCH-HHHHHHHHH--
Confidence            345555544433332  457899999999999988664                  246777777752 111111111  


Q ss_pred             hHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCC
Q 043411          112 FYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPE  160 (242)
Q Consensus       112 ~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~  160 (242)
                          +.....+-.|   .-.++.... |+++.|++.+.=++|-|.+-..
T Consensus       146 ----~~~~g~~~~~---~v~D~~~~~-~~~~~DvvLllk~lh~LE~q~~  186 (253)
T 3frh_A          146 ----AREKDWDFTF---ALQDVLCAP-PAEAGDLALIFKLLPLLEREQA  186 (253)
T ss_dssp             ----HHHTTCEEEE---EECCTTTSC-CCCBCSEEEEESCHHHHHHHST
T ss_pred             ----HHhcCCCceE---EEeecccCC-CCCCcchHHHHHHHHHhhhhch
Confidence                1001101111   122443444 6669999999999999987665

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=96.58  E-value=0.0078  Score=59.05  Aligned_cols=133  Identities=14%  Similarity=0.133  Sum_probs=75.6

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           19 AKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        19 ~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      .+...+|+++...++..+.+.      ....+..+|+|+|||+|+.+...++..    .+.      . ..+.||--+- 
T Consensus       332 vKy~~Ye~AI~~Al~d~~~~~------~~~~~~~vVldVGaGrGpLv~~al~A~----a~~------~-~~vkVyAVEk-  393 (637)
T 4gqb_A          332 IKYSQYQQAIYKCLLDRVPEE------EKDTNVQVLMVLGAGRGPLVNASLRAA----KQA------D-RRIKLYAVEK-  393 (637)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGG------GTTTCEEEEEEESCTTSHHHHHHHHHH----HHT------T-CEEEEEEEES-
T ss_pred             hhHHHHHHHHHHHHHHhhhhc------cccCCCcEEEEECCCCcHHHHHHHHHH----Hhc------C-CCcEEEEEEC-
Confidence            456667776666555433221      112346899999999999987776443    221      1 1367776554 


Q ss_pred             CCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChH
Q 043411           99 GNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPS  178 (242)
Q Consensus        99 ~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~  178 (242)
                       |+--.+.+.+-      ..+.+.. -|..+.|+. +.+-+|+.+|+++|    -||-..-    .|++       . + 
T Consensus       394 -np~A~~a~~~v------~~N~~~d-kVtVI~gd~-eev~LPEKVDIIVS----EwMG~fL----l~E~-------m-l-  447 (637)
T 4gqb_A          394 -NPNAVVTLENW------QFEEWGS-QVTVVSSDM-REWVAPEKADIIVS----ELLGSFA----DNEL-------S-P-  447 (637)
T ss_dssp             -CHHHHHHHHHH------HHHTTGG-GEEEEESCT-TTCCCSSCEEEEEC----CCCBTTB----GGGC-------H-H-
T ss_pred             -CHHHHHHHHHH------HhccCCC-eEEEEeCcc-eeccCCcccCEEEE----EcCcccc----cccC-------C-H-
Confidence             23112211111      1112222 244567777 77778899999999    5543311    1211       1 1 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          179 VCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       179 v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                                    ..|.+|-+-|+|||+|+
T Consensus       448 --------------evL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          448 --------------ECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             --------------HHHHHHGGGEEEEEEEE
T ss_pred             --------------HHHHHHHHhcCCCcEEc
Confidence                          25778889999999875

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.50  E-value=0.0023  Score=53.90  Aligned_cols=19  Identities=21%  Similarity=0.329  Sum_probs=16.9

Q ss_pred             ccEEeeecCCCCcchHHHH
Q 043411           51 CFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~   69 (242)
                      ..+|+|+|||+|..|+.+.
T Consensus        73 ~~~vLdiG~G~G~~~~~la   91 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMA   91 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHH
T ss_pred             CCEEEEecCCCCHHHHHHH
Confidence            4699999999999988776

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.49  E-value=0.0087  Score=52.39  Aligned_cols=32  Identities=31%  Similarity=0.383  Sum_probs=24.0

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      ..+|+|+|||+|..++.+...                |..+|+..|+.
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~----------------~~~~v~~vDis  155 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKF----------------SDAIVFATDVS  155 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH----------------SSCEEEEEESC
T ss_pred             CCEEEEEeCchhHHHHHHHHC----------------CCCEEEEEECC
Confidence            368999999999998877521                24677777774

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.44  E-value=0.024  Score=45.89  Aligned_cols=75  Identities=16%  Similarity=0.004  Sum_probs=40.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+..        .        +.-+++--|+-. +.-...+      ...   . +-.   .+
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~--------~--------~~~~v~~vD~~~-~~~~~a~------~~~---~-~~~---~~  100 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYL--------L--------GAESVTAFDIDP-DAIETAK------RNC---G-GVN---FM  100 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHH--------T--------TBSEEEEEESCH-HHHHHHH------HHC---T-TSE---EE
T ss_pred             CCCEEEEEeCCccHHHHHHHH--------c--------CCCEEEEEECCH-HHHHHHH------Hhc---C-CCE---EE
Confidence            457999999999998876641        1        123567667641 1111111      000   0 112   23


Q ss_pred             ccccccccCCCCceeEEEcccceeeccc
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSK  157 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~  157 (242)
                      .+++.+  +| +++|++++.-.+||+.+
T Consensus       101 ~~d~~~--~~-~~~D~v~~~~p~~~~~~  125 (200)
T 1ne2_A          101 VADVSE--IS-GKYDTWIMNPPFGSVVK  125 (200)
T ss_dssp             ECCGGG--CC-CCEEEEEECCCC-----
T ss_pred             ECcHHH--CC-CCeeEEEECCCchhccC
Confidence            446544  24 79999999999999754

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=96.41  E-value=0.0066  Score=52.76  Aligned_cols=19  Identities=5%  Similarity=-0.064  Sum_probs=16.5

Q ss_pred             HHHHHHhhhccCceEEEEe
Q 043411          194 FLSLRSEEIVSGGRMFLTF  212 (242)
Q Consensus       194 FL~~Ra~EL~pGG~lvl~~  212 (242)
                      |++.-.+-|+|||+|++..
T Consensus       153 ~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          153 RIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             HHHHHHTTEEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCcEEEEEc
Confidence            7888888999999999863

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=96.39  E-value=0.0082  Score=51.45  Aligned_cols=34  Identities=9%  Similarity=0.014  Sum_probs=25.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      ...+|+|+|||||..++.++..               .|.-+|+.-|.-
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~---------------~~~~~V~avDi~   48 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVER---------------GQIKSAIAGEVV   48 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHT---------------TSEEEEEEEESS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHh---------------CCCCEEEEEECC
Confidence            4579999999999999877621               134677777775

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.34  E-value=0.0044  Score=58.44  Aligned_cols=129  Identities=13%  Similarity=0.031  Sum_probs=69.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..|+.+.+.+             . ..-+|+-+|+-..-...+-+.       +......++-  .+
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~-------------~-~~g~V~AvDis~~rl~~~~~n-------~~r~g~~nv~--v~  161 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQM-------------K-GKGLLVTNEIFPKRAKILSEN-------IERWGVSNAI--VT  161 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHH-------------T-TCSEEEEECSSHHHHHHHHHH-------HHHHTCSSEE--EE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHc-------------C-CCCEEEEEeCCHHHHHHHHHH-------HHHcCCCceE--EE
Confidence            35799999999999999887443             0 136788888863111111111       1111122322  22


Q ss_pred             cccccccc-CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHH----HHHHHHHHHHHHHHHHHhhhcc
Q 043411          130 LGSFYQRL-FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQA----FWEQFQRDFSAFLSLRSEEIVS  204 (242)
Q Consensus       130 pgSFy~~l-~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~a----y~~q~~~D~~~FL~~Ra~EL~p  204 (242)
                      -++..+-. .+++++|.|++        +.|+.-.   |.+  .  ..+.+...    ........-..+|..-.+-|+|
T Consensus       162 ~~Da~~l~~~~~~~FD~Il~--------DaPCSg~---G~~--r--r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp  226 (456)
T 3m4x_A          162 NHAPAELVPHFSGFFDRIVV--------DAPCSGE---GMF--R--KDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN  226 (456)
T ss_dssp             CCCHHHHHHHHTTCEEEEEE--------ECCCCCG---GGT--T--TCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE
T ss_pred             eCCHHHhhhhccccCCEEEE--------CCCCCCc---ccc--c--cCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            23332111 23578999976        5665322   110  0  01111110    1122233345688888889999


Q ss_pred             CceEEEEecccC
Q 043411          205 GGRMFLTFLGRS  216 (242)
Q Consensus       205 GG~lvl~~~g~~  216 (242)
                      ||+|+.+++...
T Consensus       227 GG~LvYsTCs~~  238 (456)
T 3m4x_A          227 KGQLIYSTCTFA  238 (456)
T ss_dssp             EEEEEEEESCCC
T ss_pred             CcEEEEEEeecc
Confidence            999999888653

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.33  E-value=0.046  Score=48.71  Aligned_cols=124  Identities=10%  Similarity=0.089  Sum_probs=66.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHH-HhhcCchhHHhhhhcCCCCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNS-IFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~-lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ...+|+|.|||+|..++.+.+.+    .+.      .....+++-.|+-  +..- +.+.    .-.+.  ...   +..
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~----~~~------~~~~~~v~GiDi~--~~~~~~a~~----n~~~~--g~~---~~i  188 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQL----ELK------GDVDVHASGVDVD--DLLISLALV----GADLQ--RQK---MTL  188 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHH----HTT------SSCEEEEEEEESC--HHHHHHHHH----HHHHH--TCC---CEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHH----HHh------cCCCceEEEEECC--HHHHHHHHH----HHHhC--CCC---ceE
Confidence            46899999999999888776443    111      0123788888875  2111 1111    00011  111   122


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCc--ccC--CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPEN--LEN--NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVS  204 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~--~~~--nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~p  204 (242)
                      +.+++... .+.+.+|+|++.--+++.......  ...  .+|.-           ..        ...|+..-.+-|+|
T Consensus       189 ~~~D~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~-----------~~--------~~~~l~~~~~~Lk~  248 (344)
T 2f8l_A          189 LHQDGLAN-LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHS-----------FA--------HFLFIEQGMRYTKP  248 (344)
T ss_dssp             EESCTTSC-CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCE-----------EH--------HHHHHHHHHHTEEE
T ss_pred             EECCCCCc-cccCCccEEEECCCCCCcCchhhhhhccccCCCCcc-----------hH--------HHHHHHHHHHHhCC
Confidence            34455443 356789999997666553211000  000  00100           00        11378777788999


Q ss_pred             CceEEEEecc
Q 043411          205 GGRMFLTFLG  214 (242)
Q Consensus       205 GG~lvl~~~g  214 (242)
                      ||++++.+..
T Consensus       249 gG~~~~v~p~  258 (344)
T 2f8l_A          249 GGYLFFLVPD  258 (344)
T ss_dssp             EEEEEEEEEG
T ss_pred             CCEEEEEECc
Confidence            9999998854

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=96.32  E-value=0.013  Score=51.85  Aligned_cols=86  Identities=9%  Similarity=0.079  Sum_probs=50.5

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +.+-+|+|+|||.|+.|+.++.               ..|..+++.-|.-. +.-.+.+.      .+.....+..|   
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~---------------~~p~a~y~a~DId~-~~le~a~~------~l~~~g~~~~~---  185 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMG---------------LPAETVYIASDIDA-RLVGFVDE------ALTRLNVPHRT---  185 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTT---------------CCTTCEEEEEESBH-HHHHHHHH------HHHHTTCCEEE---
T ss_pred             CCCceeeeeccCccHHHHHHHh---------------hCCCCEEEEEeCCH-HHHHHHHH------HHHhcCCCceE---
Confidence            4578999999999999997751               22457777777652 11111111      11111111111   


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCC
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPE  160 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~  160 (242)
                      .-.++-... |+...|++.++=++|-|.+-..
T Consensus       186 ~v~D~~~~~-p~~~~DvaL~lkti~~Le~q~k  216 (281)
T 3lcv_B          186 NVADLLEDR-LDEPADVTLLLKTLPCLETQQR  216 (281)
T ss_dssp             EECCTTTSC-CCSCCSEEEETTCHHHHHHHST
T ss_pred             EEeeecccC-CCCCcchHHHHHHHHHhhhhhh
Confidence            112332333 7888999999999999876443

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=96.26  E-value=0.019  Score=49.74  Aligned_cols=77  Identities=13%  Similarity=0.096  Sum_probs=43.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.++..               .|.-+|+.-|+-..-....-+       ........+ .+...
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~---------------~~~~~V~avDi~~~al~~A~~-------N~~~~gl~~-~I~v~   77 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKN---------------QTASFAIAGEVVDGPFQSAQK-------QVRSSGLTE-QIDVR   77 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHT---------------TSEEEEEEEESSHHHHHHHHH-------HHHHTTCTT-TEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHh---------------CCCCEEEEEECCHHHHHHHHH-------HHHHcCCCc-eEEEE
Confidence            4579999999999999877621               134577777775211111111       111111111 12345


Q ss_pred             ccccccccCCCCceeEEEcc
Q 043411          130 LGSFYQRLFPSRGINFIHSS  149 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss  149 (242)
                      -|+-++.+.|.+.+|+++++
T Consensus        78 ~gD~l~~~~~~~~~D~Ivia   97 (244)
T 3gnl_A           78 KGNGLAVIEKKDAIDTIVIA   97 (244)
T ss_dssp             ECSGGGGCCGGGCCCEEEEE
T ss_pred             ecchhhccCccccccEEEEe
Confidence            55776766665568988875

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=96.25  E-value=0.027  Score=51.01  Aligned_cols=121  Identities=16%  Similarity=0.204  Sum_probs=63.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.+..           +   +..+++-.|+-..=.     .+.           .+  +..+
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~-----------~---~~~~i~gvDi~~~~~-----~~a-----------~~--~~~~   86 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAH-----------G---TAYRFVGVEIDPKAL-----DLP-----------PW--AEGI   86 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHH-----------C---SCSEEEEEESCTTTC-----CCC-----------TT--EEEE
T ss_pred             CCCEEEECCCCChHHHHHHHHHh-----------C---CCCeEEEEECCHHHH-----HhC-----------CC--CcEE
Confidence            34599999999998887765332           0   135666666642110     000           01  1123


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccC-CCCceEEcCCCChHHHHHHHHHH------HHHHHHHHHHHHhhh
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN-NKRDIYITKSSPPSVCQAFWEQF------QRDFSAFLSLRSEEI  202 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~-nkg~i~~~~~s~~~v~~ay~~q~------~~D~~~FL~~Ra~EL  202 (242)
                      .+++.. ..+.+++|+|++.         |+-... .+++..  ..-+++..+.|....      ...+..|++.-.+-|
T Consensus        87 ~~D~~~-~~~~~~fD~Ii~N---------PPy~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~L  154 (421)
T 2ih2_A           87 LADFLL-WEPGEAFDLILGN---------PPYGIVGEASKYP--IHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLL  154 (421)
T ss_dssp             ESCGGG-CCCSSCEEEEEEC---------CCCCCBSCTTTCS--BCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHE
T ss_pred             eCChhh-cCccCCCCEEEEC---------cCccCcccccccc--cccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHh
Confidence            446643 3456789999993         221110 000000  001123333232110      012446888888999


Q ss_pred             ccCceEEEEecc
Q 043411          203 VSGGRMFLTFLG  214 (242)
Q Consensus       203 ~pGG~lvl~~~g  214 (242)
                      +|||++++.+..
T Consensus       155 k~~G~~~~i~p~  166 (421)
T 2ih2_A          155 KPGGVLVFVVPA  166 (421)
T ss_dssp             EEEEEEEEEEEG
T ss_pred             CCCCEEEEEECh
Confidence            999999998875

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=96.16  E-value=0.013  Score=50.37  Aligned_cols=77  Identities=9%  Similarity=0.055  Sum_probs=43.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||||..++.++..               .|.-+|+.-|+-..-....-++       ....... --+..+
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~---------------~~~~~V~AvDi~~~al~~A~~N-------~~~~gl~-~~I~~~   77 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQM---------------GYCDFAIAGEVVNGPYQSALKN-------VSEHGLT-SKIDVR   77 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHT---------------TCEEEEEEEESSHHHHHHHHHH-------HHHTTCT-TTEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHh---------------CCCCEEEEEECCHHHHHHHHHH-------HHHcCCC-CcEEEE
Confidence            4589999999999998877621               1345777777752111111111       1111111 123345


Q ss_pred             ccccccccCCCCceeEEEcc
Q 043411          130 LGSFYQRLFPSRGINFIHSS  149 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss  149 (242)
                      -|+.++-+.|.+.+|+++.+
T Consensus        78 ~gD~l~~~~~~~~~D~Ivia   97 (230)
T 3lec_A           78 LANGLSAFEEADNIDTITIC   97 (230)
T ss_dssp             ECSGGGGCCGGGCCCEEEEE
T ss_pred             ECchhhccccccccCEEEEe
Confidence            55766766665578887753

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=96.07  E-value=0.0058  Score=51.62  Aligned_cols=21  Identities=14%  Similarity=-0.007  Sum_probs=17.6

Q ss_pred             CccEEeeecCCCCcchHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVS   70 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~   70 (242)
                      ...+|+|+|||+|..++.+++
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~   85 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGA   85 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHH
Confidence            356999999999999887763

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=95.93  E-value=0.011  Score=53.93  Aligned_cols=118  Identities=11%  Similarity=0.005  Sum_probs=65.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ..-+|+|+|||+|..|+.+...                ..-+|+..|+.. +.-...+      .....+.... -+..+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~----------------g~~~v~~vD~s~-~~l~~a~------~n~~~n~~~~-~v~~~  272 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA----------------GADEVIGIDKSP-RAIETAK------ENAKLNGVED-RMKFI  272 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT----------------TCSEEEEEESCH-HHHHHHH------HHHHHTTCGG-GEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC----------------CCCEEEEEeCCH-HHHHHHH------HHHHHcCCCc-cceEE
Confidence            3469999999999999877521                124677777641 1111111      1111111110 11123


Q ss_pred             ccccccccC----CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          130 LGSFYQRLF----PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       130 pgSFy~~l~----p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      -++..+.+.    +.+++|++++        +.|.. ..          +...     .....+++..++..-.+-|+||
T Consensus       273 ~~d~~~~~~~~~~~~~~fD~Vi~--------dpP~~-~~----------~~~~-----~~~~~~~~~~~l~~~~~~Lkpg  328 (396)
T 2as0_A          273 VGSAFEEMEKLQKKGEKFDIVVL--------DPPAF-VQ----------HEKD-----LKAGLRAYFNVNFAGLNLVKDG  328 (396)
T ss_dssp             ESCHHHHHHHHHHTTCCEEEEEE--------CCCCS-CS----------SGGG-----HHHHHHHHHHHHHHHHTTEEEE
T ss_pred             ECCHHHHHHHHHhhCCCCCEEEE--------CCCCC-CC----------CHHH-----HHHHHHHHHHHHHHHHHhcCCC
Confidence            335433221    2568999987        33331 11          1111     2345577888999999999999


Q ss_pred             ceEEEEeccc
Q 043411          206 GRMFLTFLGR  215 (242)
Q Consensus       206 G~lvl~~~g~  215 (242)
                      |+|+++....
T Consensus       329 G~lv~~~~~~  338 (396)
T 2as0_A          329 GILVTCSCSQ  338 (396)
T ss_dssp             EEEEEEECCT
T ss_pred             cEEEEEECCC
Confidence            9999887643

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=95.87  E-value=0.016  Score=53.02  Aligned_cols=115  Identities=10%  Similarity=0.101  Sum_probs=62.6

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCC--C-ceee
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFG--P-CFIA  127 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~--~-~f~~  127 (242)
                      .-+|+|+|||+|..|+.+.+        .    +    .-+|+..|+-. +.-...+.      ....+...  + .|+ 
T Consensus       213 ~~~VLDl~cGtG~~sl~la~--------~----g----a~~V~~vD~s~-~al~~A~~------N~~~n~~~~~~v~~~-  268 (385)
T 2b78_A          213 GKTVLNLFSYTAAFSVAAAM--------G----G----AMATTSVDLAK-RSRALSLA------HFEANHLDMANHQLV-  268 (385)
T ss_dssp             TCEEEEETCTTTHHHHHHHH--------T----T----BSEEEEEESCT-THHHHHHH------HHHHTTCCCTTEEEE-
T ss_pred             CCeEEEEeeccCHHHHHHHH--------C----C----CCEEEEEECCH-HHHHHHHH------HHHHcCCCccceEEE-
Confidence            36899999999999987752        1    1    13677777752 11111111      11111111  2 233 


Q ss_pred             ccccccccccC----CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043411          128 GMLGSFYQRLF----PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIV  203 (242)
Q Consensus       128 ~vpgSFy~~l~----p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~  203 (242)
                        -++..+-+-    ...++|+|++        +.|. ....++.               .....+++..+++.-.+-|+
T Consensus       269 --~~D~~~~l~~~~~~~~~fD~Ii~--------DPP~-~~~~~~~---------------~~~~~~~~~~ll~~~~~~L~  322 (385)
T 2b78_A          269 --VMDVFDYFKYARRHHLTYDIIII--------DPPS-FARNKKE---------------VFSVSKDYHKLIRQGLEILS  322 (385)
T ss_dssp             --ESCHHHHHHHHHHTTCCEEEEEE--------CCCC-C-----C---------------CCCHHHHHHHHHHHHHHTEE
T ss_pred             --ECCHHHHHHHHHHhCCCccEEEE--------CCCC-CCCChhh---------------HHHHHHHHHHHHHHHHHhcC
Confidence              334433221    1458999987        3333 1100111               11234566678988889999


Q ss_pred             cCceEEEEeccc
Q 043411          204 SGGRMFLTFLGR  215 (242)
Q Consensus       204 pGG~lvl~~~g~  215 (242)
                      |||+|+++....
T Consensus       323 pgG~l~~~~~~~  334 (385)
T 2b78_A          323 ENGLIIASTNAA  334 (385)
T ss_dssp             EEEEEEEEECCT
T ss_pred             CCcEEEEEeCCC
Confidence            999999987543

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=95.62  E-value=0.018  Score=57.24  Aligned_cols=46  Identities=13%  Similarity=0.017  Sum_probs=30.5

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHH
Q 043411           18 YAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKI   72 (242)
Q Consensus        18 Y~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~i   72 (242)
                      ..+...+|+++..+++.+..+         ..+..+|+|+|||+|+.+...+...
T Consensus       386 ~vRy~~Y~~AI~~al~d~~~~---------~~~~~VVldVGaGtGpLs~~al~A~  431 (745)
T 3ua3_A          386 QIKYDVYGEAVVGALKDLGAD---------GRKTVVIYLLGGGRGPIGTKILKSE  431 (745)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT---------CCSEEEEEEESCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhhcc---------cCCCcEEEEECCCCCHHHHHHHHHH
Confidence            456666777666655554322         1246799999999999987666443

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=95.29  E-value=0.093  Score=47.39  Aligned_cols=105  Identities=8%  Similarity=0.054  Sum_probs=60.3

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ..+|+|+| |+|..++.+..        .    +   +..+|+.-|+.. +.-.+.+      .........+  +..+.
T Consensus       173 ~~~VLDlG-G~G~~~~~la~--------~----~---~~~~v~~vDi~~-~~l~~a~------~~~~~~g~~~--v~~~~  227 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALML--------S----G---LPKRIAVLDIDE-RLTKFIE------KAANEIGYED--IEIFT  227 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHH--------H----T---CCSEEEEECSCH-HHHHHHH------HHHHHHTCCC--EEEEC
T ss_pred             CCEEEEEC-CCCHHHHHHHH--------h----C---CCCEEEEEECCH-HHHHHHH------HHHHHcCCCC--EEEEE
Confidence            57999999 99999886641        1    1   235788888741 2111111      1111111112  33456


Q ss_pred             cccccccC--CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          131 GSFYQRLF--PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       131 gSFy~~l~--p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +++.+.+-  +++++|+|++..-+++                          .        +...||+.-.+-|+|||++
T Consensus       228 ~D~~~~l~~~~~~~fD~Vi~~~p~~~--------------------------~--------~~~~~l~~~~~~LkpgG~~  273 (373)
T 2qm3_A          228 FDLRKPLPDYALHKFDTFITDPPETL--------------------------E--------AIRAFVGRGIATLKGPRCA  273 (373)
T ss_dssp             CCTTSCCCTTTSSCBSEEEECCCSSH--------------------------H--------HHHHHHHHHHHTBCSTTCE
T ss_pred             ChhhhhchhhccCCccEEEECCCCch--------------------------H--------HHHHHHHHHHHHcccCCeE
Confidence            67755332  2468999998432221                          0        1356888888999999954


Q ss_pred             -EEEecc
Q 043411          209 -FLTFLG  214 (242)
Q Consensus       209 -vl~~~g  214 (242)
                       ++++..
T Consensus       274 ~~~~~~~  280 (373)
T 2qm3_A          274 GYFGITR  280 (373)
T ss_dssp             EEEEECT
T ss_pred             EEEEEec
Confidence             666554

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=95.28  E-value=0.017  Score=52.59  Aligned_cols=26  Identities=15%  Similarity=0.204  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHhhhccCceEEEEecc
Q 043411          189 RDFSAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       189 ~D~~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                      +++..++..-.+-|+|||++++++..
T Consensus       316 ~~~~~~l~~~~~~LkpgG~l~~~~~~  341 (396)
T 3c0k_A          316 RGYKDINMLAIQLLNEGGILLTFSCS  341 (396)
T ss_dssp             THHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            35556888888999999999998754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.25  E-value=0.04  Score=54.47  Aligned_cols=120  Identities=15%  Similarity=0.101  Sum_probs=64.6

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|..|+.++.        .    +    .-+|+..|+.. ..-.+.+      .....+....--+..+-
T Consensus       540 g~~VLDlg~GtG~~sl~aa~--------~----g----a~~V~aVD~s~-~al~~a~------~N~~~ngl~~~~v~~i~  596 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGL--------G----G----ARSTTTVDMSR-TYLEWAE------RNLRLNGLTGRAHRLIQ  596 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHH--------T----T----CSEEEEEESCH-HHHHHHH------HHHHHTTCCSTTEEEEE
T ss_pred             CCcEEEeeechhHHHHHHHH--------C----C----CCEEEEEeCCH-HHHHHHH------HHHHHcCCCccceEEEe
Confidence            36899999999998886651        1    1    14677777752 1111111      11111111100112233


Q ss_pred             cccccccC-CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          131 GSFYQRLF-PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       131 gSFy~~l~-p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      ++.++-+- ..+++|+|++        +.|. ...++...           +  ..+..+|+..++..-.+-|+|||+|+
T Consensus       597 ~D~~~~l~~~~~~fD~Ii~--------DPP~-f~~~~~~~-----------~--~~~~~~~~~~ll~~a~~~LkpgG~L~  654 (703)
T 3v97_A          597 ADCLAWLREANEQFDLIFI--------DPPT-FSNSKRME-----------D--AFDVQRDHLALMKDLKRLLRAGGTIM  654 (703)
T ss_dssp             SCHHHHHHHCCCCEEEEEE--------CCCS-BC--------------------CCBHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCHHHHHHhcCCCccEEEE--------CCcc-ccCCccch-----------h--HHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence            45544221 4578999987        3333 21111000           0  01234677779988899999999999


Q ss_pred             EEeccc
Q 043411          210 LTFLGR  215 (242)
Q Consensus       210 l~~~g~  215 (242)
                      +++..+
T Consensus       655 ~s~~~~  660 (703)
T 3v97_A          655 FSNNKR  660 (703)
T ss_dssp             EEECCT
T ss_pred             EEECCc
Confidence            887654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=95.20  E-value=0.04  Score=49.24  Aligned_cols=100  Identities=16%  Similarity=0.198  Sum_probs=57.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~  128 (242)
                      ..-+|+|+|||+|..++. .+                 ...+|+..|+-. +.-...+      .....++. .+  +..
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~-----------------~~~~V~~vD~s~-~ai~~a~------~n~~~n~l~~~--v~~  247 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK-----------------NAKKIYAIDINP-HAIELLK------KNIKLNKLEHK--IIP  247 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT-----------------TSSEEEEEESCH-HHHHHHH------HHHHHTTCTTT--EEE
T ss_pred             CCCEEEEccCccCHHHHh-cc-----------------CCCEEEEEECCH-HHHHHHH------HHHHHcCCCCc--EEE
Confidence            346999999999999886 51                 125778777741 1111111      11111111 12  122


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.++..+-+   +++|++++        +.|....                             .|+..-.+-|+|||++
T Consensus       248 ~~~D~~~~~---~~fD~Vi~--------dpP~~~~-----------------------------~~l~~~~~~L~~gG~l  287 (336)
T 2yx1_A          248 ILSDVREVD---VKGNRVIM--------NLPKFAH-----------------------------KFIDKALDIVEEGGVI  287 (336)
T ss_dssp             EESCGGGCC---CCEEEEEE--------CCTTTGG-----------------------------GGHHHHHHHEEEEEEE
T ss_pred             EECChHHhc---CCCcEEEE--------CCcHhHH-----------------------------HHHHHHHHHcCCCCEE
Confidence            344554433   78899886        2333110                             2666666778999999


Q ss_pred             EEEecccC
Q 043411          209 FLTFLGRS  216 (242)
Q Consensus       209 vl~~~g~~  216 (242)
                      ++..+...
T Consensus       288 ~~~~~~~~  295 (336)
T 2yx1_A          288 HYYTIGKD  295 (336)
T ss_dssp             EEEEEESS
T ss_pred             EEEEeecC
Confidence            99888765

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=95.04  E-value=0.083  Score=46.46  Aligned_cols=32  Identities=16%  Similarity=0.042  Sum_probs=24.8

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      --+|+|+|||+|+.|+.++.        +    +    ...|+.+|+-
T Consensus       126 g~~VlD~~aG~G~~~i~~a~--------~----g----~~~V~avD~n  157 (278)
T 3k6r_A          126 DELVVDMFAGIGHLSLPIAV--------Y----G----KAKVIAIEKD  157 (278)
T ss_dssp             TCEEEETTCTTTTTTHHHHH--------H----T----CCEEEEECCC
T ss_pred             CCEEEEecCcCcHHHHHHHH--------h----c----CCeEEEEECC
Confidence            47999999999999987651        1    1    2578899986

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=94.90  E-value=0.44  Score=48.19  Aligned_cols=129  Identities=14%  Similarity=0.101  Sum_probs=67.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHh--h-cCchhHHhhhhcCCCCcee
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIF--E-SLPDFYERIKKDKFGPCFI  126 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf--~-~l~~~~~~l~~~~~~~~f~  126 (242)
                      ...+|+|.|||+|...+.+...+           + .....+++-.|+-.. --.+.  + .+..  ..+. ......  
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l-----------~-ei~~~~IyGvEIDp~-Al~LAK~RlNL~l--N~Ll-hGi~~~--  382 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGF-----------N-NVMPRQIWANDIETL-FLELLSIRLGLLF--PQLV-SSNNAP--  382 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTS-----------T-TCCGGGEEEECSCGG-GHHHHHHHHHTTS--TTTC-BTTBCC--
T ss_pred             CCCEEEECCCCccHHHHHHHHHh-----------c-ccCCCeEEEEECCHH-HHHHHHHHHHHHH--hhhh-cCCCcc--
Confidence            46799999999998866554221           0 011266777777531 11111  0 0000  0000 000111  


Q ss_pred             ecccccccc-ccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHH--------------HH
Q 043411          127 AGMLGSFYQ-RLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQR--------------DF  191 (242)
Q Consensus       127 ~~vpgSFy~-~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~--------------D~  191 (242)
                      ....++|.. ...+...+|+|++         .|+-.         .....+...+.|...+..              -.
T Consensus       383 ~I~~dD~L~~~~~~~~kFDVVIg---------NPPYg---------~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy  444 (878)
T 3s1s_A          383 TITGEDVCSLNPEDFANVSVVVM---------NPPYV---------SGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVE  444 (878)
T ss_dssp             EEECCCGGGCCGGGGTTEEEEEE---------CCBCC---------SSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHH
T ss_pred             eEEecchhcccccccCCCCEEEE---------CCCcc---------ccccchhhhhhHHHHhhhhccccccccccccchH
Confidence            112345543 2335678999999         34421         111223333344333322              14


Q ss_pred             HHHHHHHHhhhccCceEEEEecc
Q 043411          192 SAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       192 ~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                      ..|+.+-.+-|+|||++++.+..
T Consensus       445 ~aFIe~Al~lLKpGGrLAfIlP~  467 (878)
T 3s1s_A          445 ALFLELVTELVQDGTVISAIMPK  467 (878)
T ss_dssp             HHHHHHHHHHSCTTCEEEEEEET
T ss_pred             HHHHHHHHHhcCCCcEEEEEECh
Confidence            56899999999999999998874

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=94.84  E-value=0.18  Score=44.60  Aligned_cols=20  Identities=30%  Similarity=0.308  Sum_probs=16.5

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|||||.|..|..++
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa   93 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAA   93 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHH
Confidence            34689999999999987654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=94.17  E-value=0.068  Score=46.58  Aligned_cols=20  Identities=20%  Similarity=0.212  Sum_probs=17.6

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..|..+.
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~   47 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLL   47 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHH
T ss_pred             CCCEEEEEcCcccHHHHHHH
Confidence            45799999999999999876

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=94.02  E-value=0.28  Score=43.48  Aligned_cols=34  Identities=21%  Similarity=0.223  Sum_probs=25.9

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      .-+|+|+|||+|.-|+.+.+.+ .             +.-+|+-+|.-
T Consensus       103 g~~VLDlcaG~G~kt~~la~~~-~-------------~~g~V~a~D~~  136 (309)
T 2b9e_A          103 GSHVIDACAAPGNKTSHLAALL-K-------------NQGKIFAFDLD  136 (309)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHH-T-------------TCSEEEEEESC
T ss_pred             CCEEEEeCCChhHHHHHHHHHh-C-------------CCCEEEEEeCC
Confidence            4699999999999999877433 0             23678888875

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=93.88  E-value=0.15  Score=44.09  Aligned_cols=103  Identities=15%  Similarity=0.171  Sum_probs=58.3

Q ss_pred             CccEEeeecCCCCcchHHHHH------------HHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHh--------hcC
Q 043411           50 GCFNVADLGCSSGPNTLLVVS------------KIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIF--------ESL  109 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~------------~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf--------~~l  109 (242)
                      ..-+|+|+|||+|..|..+++            ..++.++++...    .+.++++..|...-||..++        .++
T Consensus        29 ~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~----~~~v~~i~~D~~~~~~~~~~~~~~~~vv~Nl  104 (255)
T 3tqs_A           29 KTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ----QKNITIYQNDALQFDFSSVKTDKPLRVVGNL  104 (255)
T ss_dssp             TTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT----CTTEEEEESCTTTCCGGGSCCSSCEEEEEEC
T ss_pred             CcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh----CCCcEEEEcchHhCCHHHhccCCCeEEEecC
Confidence            357899999999999998874            344555554321    24599999999877776542        233


Q ss_pred             chhHH------hhhhcCCCCceeeccccccccccC-CCCceeEEEcccceeecc
Q 043411          110 PDFYE------RIKKDKFGPCFIAGMLGSFYQRLF-PSRGINFIHSSYSVHWLS  156 (242)
Q Consensus       110 ~~~~~------~l~~~~~~~~f~~~vpgSFy~~l~-p~~svdl~~Ss~alhWLs  156 (242)
                      |-.-.      -+.....-...+..+...+-+|+. ++++=+.+-.|-.+||..
T Consensus       105 PY~is~~il~~ll~~~~~~~~~~lm~QkEva~Rl~a~pg~k~yg~lsv~~q~~~  158 (255)
T 3tqs_A          105 PYNISTPLLFHLFSQIHCIEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFC  158 (255)
T ss_dssp             CHHHHHHHHHHHHHTGGGEEEEEEEEEHHHHHHHTCCTTSTTCSHHHHHHHHHE
T ss_pred             CcccCHHHHHHHHhCCCChheEEEEEeHHHHHHhhCCCCCCccchhhheeeeeE
Confidence            31111      011100012233345566666666 556555544444455544

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=93.84  E-value=0.95  Score=43.26  Aligned_cols=20  Identities=15%  Similarity=0.175  Sum_probs=18.1

Q ss_pred             HHHHHHhhhccCceEEEEec
Q 043411          194 FLSLRSEEIVSGGRMFLTFL  213 (242)
Q Consensus       194 FL~~Ra~EL~pGG~lvl~~~  213 (242)
                      |+..-.+-|+|||++++.++
T Consensus       377 Fl~~~l~~Lk~gGr~aiVlP  396 (544)
T 3khk_A          377 WMLHMLYHLAPTGSMALLLA  396 (544)
T ss_dssp             HHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHhccCceEEEEec
Confidence            88888899999999999875

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=93.81  E-value=0.21  Score=44.26  Aligned_cols=20  Identities=30%  Similarity=0.393  Sum_probs=16.4

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|||||.|..+...+
T Consensus        90 ~~~~VLDLGaAPGGWsQvAa  109 (282)
T 3gcz_A           90 PTGIVVDLGCGRGGWSYYAA  109 (282)
T ss_dssp             CCEEEEEETCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHH
Confidence            34699999999999987655

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=93.78  E-value=0.13  Score=46.59  Aligned_cols=77  Identities=13%  Similarity=-0.108  Sum_probs=41.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+....               +..+|+-.|+-.. .-...      +......... -.+..+
T Consensus       217 ~~~~vLD~gCGsG~~~i~~a~~~---------------~~~~v~g~Dis~~-~l~~A------~~n~~~~gl~-~~i~~~  273 (373)
T 3tm4_A          217 DGGSVLDPMCGSGTILIELALRR---------------YSGEIIGIEKYRK-HLIGA------EMNALAAGVL-DKIKFI  273 (373)
T ss_dssp             CSCCEEETTCTTCHHHHHHHHTT---------------CCSCEEEEESCHH-HHHHH------HHHHHHTTCG-GGCEEE
T ss_pred             CCCEEEEccCcCcHHHHHHHHhC---------------CCCeEEEEeCCHH-HHHHH------HHHHHHcCCC-CceEEE
Confidence            45789999999999877665211               1135666666420 00011      1111111100 012234


Q ss_pred             ccccccccCCCCceeEEEcc
Q 043411          130 LGSFYQRLFPSRGINFIHSS  149 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss  149 (242)
                      -+++.+-.+|++++|++++.
T Consensus       274 ~~D~~~~~~~~~~fD~Ii~n  293 (373)
T 3tm4_A          274 QGDATQLSQYVDSVDFAISN  293 (373)
T ss_dssp             ECCGGGGGGTCSCEEEEEEE
T ss_pred             ECChhhCCcccCCcCEEEEC
Confidence            45776655677899999993

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=93.59  E-value=0.26  Score=45.54  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=18.3

Q ss_pred             HHHHHHHhhhccCceEEEEecc
Q 043411          193 AFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       193 ~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                      .|++.-.+-|+|||++++.+..
T Consensus       288 ~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          288 NFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEH
T ss_pred             HHHHHHHHHhccCCEEEEEECC
Confidence            3787778889999999998863

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=93.57  E-value=0.094  Score=48.64  Aligned_cols=20  Identities=10%  Similarity=0.106  Sum_probs=17.1

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ..-+|+|+|||+|..++.+.
T Consensus       290 ~~~~VLDlgcG~G~~sl~la  309 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLA  309 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHH
T ss_pred             CCCEEEEeeccchHHHHHHH
Confidence            34799999999999998765

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=93.53  E-value=0.074  Score=47.11  Aligned_cols=79  Identities=11%  Similarity=0.074  Sum_probs=44.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ..-+|+|+|||+|..|..+.+..                 .+|+--|+-. ++-...+.      .+..  .++  +..+
T Consensus        50 ~~~~VLEIG~G~G~lT~~La~~~-----------------~~V~aVEid~-~li~~a~~------~~~~--~~~--v~vi  101 (295)
T 3gru_A           50 KDDVVLEIGLGKGILTEELAKNA-----------------KKVYVIEIDK-SLEPYANK------LKEL--YNN--IEII  101 (295)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS-----------------SEEEEEESCG-GGHHHHHH------HHHH--CSS--EEEE
T ss_pred             CcCEEEEECCCchHHHHHHHhcC-----------------CEEEEEECCH-HHHHHHHH------Hhcc--CCC--eEEE
Confidence            35699999999999999887321                 2344445431 22221111      1110  112  1234


Q ss_pred             ccccccccCCCCceeEEEcccceeecc
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLS  156 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs  156 (242)
                      -+++.+--+|..++|.++++...+|-+
T Consensus       102 ~gD~l~~~~~~~~fD~Iv~NlPy~is~  128 (295)
T 3gru_A          102 WGDALKVDLNKLDFNKVVANLPYQISS  128 (295)
T ss_dssp             ESCTTTSCGGGSCCSEEEEECCGGGHH
T ss_pred             ECchhhCCcccCCccEEEEeCcccccH
Confidence            456655556666788888886655544

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=93.34  E-value=0.072  Score=48.72  Aligned_cols=33  Identities=24%  Similarity=0.258  Sum_probs=25.8

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      ..+|+|+|||+|..++.+.+.+               +...|+.+|+-
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~---------------~~~~V~avDi~   80 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALET---------------PAEEVWLNDIS   80 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHS---------------SCSEEEEEESC
T ss_pred             CCEEEECCCchhHHHHHHHHhC---------------CCCeEEEEECC
Confidence            4789999999999999877332               13568999986

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=92.35  E-value=0.018  Score=49.11  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=18.8

Q ss_pred             CccEEeeecCCCCcchHHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVSK   71 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~   71 (242)
                      ...+|+|+|||+|..|..+.+.
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~   51 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQR   51 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEEeCCchHHHHHHHHc
Confidence            4579999999999999988753

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=92.06  E-value=0.79  Score=40.85  Aligned_cols=21  Identities=29%  Similarity=0.343  Sum_probs=18.0

Q ss_pred             CCccEEeeecCCCCcchHHHH
Q 043411           49 PGCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ..-.+|+|+|||.|..|..++
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~  100 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAA  100 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHH
T ss_pred             CCCCEEEEcCCCCCHHHHHHH
Confidence            456899999999999988776

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=91.62  E-value=1.7  Score=38.12  Aligned_cols=20  Identities=15%  Similarity=0.129  Sum_probs=17.4

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      .+-+|+|+||+.|..++.+.
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma  125 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMR  125 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHH
T ss_pred             CCCcEEEeecCchHHHHHHH
Confidence            46899999999999988764

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=91.55  E-value=0.018  Score=50.43  Aligned_cols=81  Identities=9%  Similarity=0.021  Sum_probs=47.2

Q ss_pred             cccCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHH------------HHHH
Q 043411            8 CMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSK------------IIDS   75 (242)
Q Consensus         8 ~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~------------ii~~   75 (242)
                      ...|=....+|-+|-..+..++.++...+.          .... +|+|+|||+|..|..+++.            .++.
T Consensus        15 ~~~~~~~~k~~GQnfL~d~~i~~~Iv~~~~----------~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~   83 (271)
T 3fut_A           15 ERHGLFADKRFGQNFLVSEAHLRRIVEAAR----------PFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPV   83 (271)
T ss_dssp             HHTTCCCSTTSSCCEECCHHHHHHHHHHHC----------CCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHH
T ss_pred             HhcCCCccccCCccccCCHHHHHHHHHhcC----------CCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence            333433445566665555555444332211          1234 9999999999999988764            2344


Q ss_pred             HHHHHhhhcCCCCceEEEecCCCCCchHH
Q 043411           76 IHKLYHQVNKKLPEFQVFLNDLPGNDFNS  104 (242)
Q Consensus        76 i~~~~~~~~~~~~~~qv~~nDLp~NDFn~  104 (242)
                      ++++..     ...++++..|.-.-||..
T Consensus        84 l~~~~~-----~~~v~vi~~D~l~~~~~~  107 (271)
T 3fut_A           84 LEETLS-----GLPVRLVFQDALLYPWEE  107 (271)
T ss_dssp             HHHHTT-----TSSEEEEESCGGGSCGGG
T ss_pred             HHHhcC-----CCCEEEEECChhhCChhh
Confidence            444321     135888888876556553

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=90.67  E-value=0.24  Score=39.84  Aligned_cols=79  Identities=16%  Similarity=0.152  Sum_probs=43.5

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..++.+.+        .    +   . -+++-.|+-. +.-...+      ........ +  +..+
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~--------~----~---~-~~v~~vD~~~-~~~~~a~------~~~~~~~~-~--~~~~  102 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALL--------L----G---A-KEVICVEVDK-EAVDVLI------ENLGEFKG-K--FKVF  102 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHH--------T----T---C-SEEEEEESCH-HHHHHHH------HHTGGGTT-S--EEEE
T ss_pred             CcCEEEEeeCCCCHHHHHHHH--------c----C---C-CEEEEEECCH-HHHHHHH------HHHHHcCC-C--EEEE
Confidence            357999999999998876641        1    1   1 3577777641 1111111      11111111 1  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeeccc
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSK  157 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~  157 (242)
                      .+++.+  +| +++|++++.-..|+.++
T Consensus       103 ~~d~~~--~~-~~~D~v~~~~p~~~~~~  127 (207)
T 1wy7_A          103 IGDVSE--FN-SRVDIVIMNPPFGSQRK  127 (207)
T ss_dssp             ESCGGG--CC-CCCSEEEECCCCSSSST
T ss_pred             ECchHH--cC-CCCCEEEEcCCCccccC
Confidence            456644  23 58999999877777553

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=90.59  E-value=0.27  Score=43.03  Aligned_cols=51  Identities=18%  Similarity=0.210  Sum_probs=36.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHH----------------HHHHHHHhhhcCCCCceEEEecCCCCCchHHHh
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKII----------------DSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIF  106 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii----------------~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf  106 (242)
                      ...+|+|+|||+|..|..+.+..-                +.++++.      .+.++++..|.-.-||..++
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~------~~~v~~i~~D~~~~~~~~~~  108 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF------GELLELHAGDALTFDFGSIA  108 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH------GGGEEEEESCGGGCCGGGGS
T ss_pred             CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc------CCCcEEEECChhcCChhHhc
Confidence            357999999999999998886532                2222221      23589999998777777654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=90.42  E-value=3.2  Score=37.62  Aligned_cols=22  Identities=18%  Similarity=0.113  Sum_probs=17.6

Q ss_pred             CccEEeeecCCCCcchHHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVSK   71 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~   71 (242)
                      ...+|+|.|||||...+.....
T Consensus       195 ~~~~vlDp~CGSGt~lieaa~~  216 (385)
T 3ldu_A          195 AGRVLVDPMCGSGTILIEAAMI  216 (385)
T ss_dssp             TTSCEEETTCTTCHHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHH
Confidence            3578999999999988766543

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=90.39  E-value=1.2  Score=40.98  Aligned_cols=65  Identities=15%  Similarity=0.169  Sum_probs=39.6

Q ss_pred             CCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceE
Q 043411           12 GGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQ   91 (242)
Q Consensus        12 G~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~q   91 (242)
                      |.....|+-+...=+.....+...+.+.   .     ....+|+|++||+|..++.+++..             . ..-+
T Consensus        22 ~~~~~Ffn~~~~~nR~l~~~~~~~~~~~---~-----~~g~~VLDlfaGtG~~sl~aa~~~-------------~-ga~~   79 (392)
T 3axs_A           22 SDMPVFYNPRMRVNRDLAVLGLEYLCKK---L-----GRPVKVADPLSASGIRAIRFLLET-------------S-CVEK   79 (392)
T ss_dssp             TTCCSSCCGGGHHHHHHHHHHHHHHHHH---H-----CSCEEEEESSCTTSHHHHHHHHHC-------------S-CEEE
T ss_pred             CCCCEEEcCCcHHHHHHHHHHHHHHhhc---c-----CCCCEEEECCCcccHHHHHHHHhC-------------C-CCCE
Confidence            4456788666555444433333322211   0     124799999999999999877322             0 1267


Q ss_pred             EEecCCC
Q 043411           92 VFLNDLP   98 (242)
Q Consensus        92 v~~nDLp   98 (242)
                      |+.+|+-
T Consensus        80 V~avDi~   86 (392)
T 3axs_A           80 AYANDIS   86 (392)
T ss_dssp             EEEECSC
T ss_pred             EEEEECC
Confidence            8888886

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=90.12  E-value=0.28  Score=46.83  Aligned_cols=21  Identities=38%  Similarity=0.562  Sum_probs=18.1

Q ss_pred             CCccEEeeecCCCCcchHHHH
Q 043411           49 PGCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ..+.+|+|+|||.|..|..+.
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la   85 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLA   85 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHH
Confidence            457899999999999988775

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=90.02  E-value=3.3  Score=37.73  Aligned_cols=21  Identities=19%  Similarity=0.070  Sum_probs=16.9

Q ss_pred             CccEEeeecCCCCcchHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVS   70 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~   70 (242)
                      ...+|+|.+||||...+....
T Consensus       201 ~~~~vlDp~CGSGt~~ieaa~  221 (393)
T 3k0b_A          201 PDRPFYDPVCGSGTIPIEAAL  221 (393)
T ss_dssp             TTSCEEETTCTTSHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHH
Confidence            357899999999988776654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=89.38  E-value=0.47  Score=40.74  Aligned_cols=54  Identities=9%  Similarity=0.017  Sum_probs=32.9

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHH----------HHHHHHhhhcCCCCceEEEecCCCCCchHHHh
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIID----------SIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIF  106 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~----------~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf  106 (242)
                      ..+|+|+|||+|..|. + ...-+          .+.+..++.-...+.++++..|.-.-||..+|
T Consensus        22 ~~~VLEIG~G~G~lt~-l-~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~   85 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE-P-VGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA   85 (252)
T ss_dssp             TCCEEEECCTTTTTHH-H-HHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred             cCEEEEECCCCcHHHH-h-hhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence            4689999999999999 4 32211          01111111001113589999998877887765

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=89.27  E-value=0.17  Score=42.61  Aligned_cols=22  Identities=18%  Similarity=0.146  Sum_probs=18.9

Q ss_pred             CccEEeeecCCCCcchHHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVSK   71 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~   71 (242)
                      ...+|+|+|||+|..|..+.+.
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~   50 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKI   50 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHH
T ss_pred             CCCEEEEEeCCCCHHHHHHHHh
Confidence            4579999999999999988754

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=88.23  E-value=0.099  Score=45.90  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=17.9

Q ss_pred             CccEEeeecCCCCcchHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVS   70 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~   70 (242)
                      ...+|+|+|||+|..|..+.+
T Consensus        42 ~~~~VLDiG~G~G~lt~~La~   62 (299)
T 2h1r_A           42 SSDIVLEIGCGTGNLTVKLLP   62 (299)
T ss_dssp             TTCEEEEECCTTSTTHHHHTT
T ss_pred             CcCEEEEEcCcCcHHHHHHHh
Confidence            357999999999999997764

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=87.96  E-value=0.42  Score=38.57  Aligned_cols=33  Identities=12%  Similarity=0.134  Sum_probs=24.6

Q ss_pred             CccEEeeecCCCCc-chHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           50 GCFNVADLGCSSGP-NTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        50 ~~~~IaDlGCs~G~-ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      ...+|+|+|||+|. |+..+.++.                -+.|.-.|+-
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~----------------g~~V~atDIn   68 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHS----------------KVDLVLTDIK   68 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHS----------------CCEEEEECSS
T ss_pred             CCCcEEEEccCCChHHHHHHHHhC----------------CCeEEEEECC
Confidence            35799999999994 888775211                3778888875

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=87.77  E-value=2.2  Score=40.80  Aligned_cols=132  Identities=14%  Similarity=0.094  Sum_probs=65.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|.+||||...+.+.+.+    +        .....+++-.|+-.  .   --.+....-.++.  ...--+..+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l----~--------~~~~~~i~G~Eid~--~---~~~lA~~Nl~l~g--i~~~~~~I~  281 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYS----R--------QPQTVVYFGQELNT--S---TYNLARMNMILHG--VPIENQFLH  281 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHC----S--------CTTTCEEEEEESCH--H---HHHHHHHHHHHTT--CCGGGEEEE
T ss_pred             CCCEEeecccchhHHHHHHHHHH----H--------hccCceEEEEECcH--H---HHHHHHHHHHHcC--CCcCccceE
Confidence            35799999999999877665432    1        11246777777641  1   1111111111111  000001123


Q ss_pred             ccccccc---cCCCCceeEEEcc--cceeecccCCCcccCCCCceE--EcCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043411          130 LGSFYQR---LFPSRGINFIHSS--YSVHWLSKVPENLENNKRDIY--ITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEI  202 (242)
Q Consensus       130 pgSFy~~---l~p~~svdl~~Ss--~alhWLs~~P~~~~~nkg~i~--~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL  202 (242)
                      .|+++..   ..+...+|+|++.  +...|-... ....+.+-.-|  +...+.            .|+ .|+..-.+-|
T Consensus       282 ~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~-~~~~d~rf~~~G~~~~~s~------------~~~-~Fl~~~l~~L  347 (542)
T 3lkd_A          282 NADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASS-GFMDDPRFSPFGKLAPKSK------------ADF-AFLLHGYYHL  347 (542)
T ss_dssp             ESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCG-GGGGSTTTGGGSSCCCTTC------------CHH-HHHHHHHHTB
T ss_pred             ecceecccccccccccccEEEecCCcCCccccch-hhhhhhhhhhhhhcCCCch------------hhH-HHHHHHHHHh
Confidence            3455443   2567889999985  444452110 00000000000  001111            122 3888888899


Q ss_pred             c-cCceEEEEecc
Q 043411          203 V-SGGRMFLTFLG  214 (242)
Q Consensus       203 ~-pGG~lvl~~~g  214 (242)
                      + |||++++.+..
T Consensus       348 k~~gGr~a~VlP~  360 (542)
T 3lkd_A          348 KQDNGVMAIVLPH  360 (542)
T ss_dssp             CTTTCEEEEEEET
T ss_pred             CCCceeEEEEecc
Confidence            9 99999998864

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=87.64  E-value=0.19  Score=43.00  Aligned_cols=53  Identities=15%  Similarity=0.139  Sum_probs=31.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHH---------HHHHHHHHhhhcCCCCceEEEecCCCCCchHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKI---------IDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNS  104 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~i---------i~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~  104 (242)
                      ..-+|+|+|||+|..|..+.+.-         =..+.+..++.  ....++++..|.-.-||..
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--GDERLEVINEDASKFPFCS   92 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--CCTTEEEECSCTTTCCGGG
T ss_pred             CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--cCCCeEEEEcchhhCChhH
Confidence            35799999999999999887541         01111111111  1234778887776656554

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=86.11  E-value=1  Score=39.53  Aligned_cols=21  Identities=29%  Similarity=0.419  Sum_probs=17.2

Q ss_pred             CCccEEeeecCCCCcchHHHH
Q 043411           49 PGCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ..-.+|+||||+.|.=|...+
T Consensus        72 kpg~~VVDLGaAPGGWSQvAa   92 (269)
T 2px2_A           72 QPIGKVVDLGCGRGGWSYYAA   92 (269)
T ss_dssp             CCCEEEEEETCTTSHHHHHHT
T ss_pred             CCCCEEEEcCCCCCHHHHHHh
Confidence            346899999999999877554

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=85.64  E-value=9.4  Score=34.60  Aligned_cols=21  Identities=19%  Similarity=0.137  Sum_probs=16.9

Q ss_pred             CccEEeeecCCCCcchHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVS   70 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~   70 (242)
                      ....|+|.+||||...+....
T Consensus       194 ~~~~llDp~CGSGt~lIEAa~  214 (384)
T 3ldg_A          194 PDKPFVDPTCGSGTFCIEAAM  214 (384)
T ss_dssp             TTSCEEETTCTTSHHHHHHHH
T ss_pred             CCCeEEEeCCcCCHHHHHHHH
Confidence            357899999999988776654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=83.80  E-value=2.1  Score=40.72  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=18.4

Q ss_pred             HHHHHHHhhhccCceEEEEecc
Q 043411          193 AFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       193 ~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                      .|+..-.+-|+|||++++.+..
T Consensus       293 ~Fl~~~l~~Lk~gGr~a~V~p~  314 (541)
T 2ar0_A          293 CFMQHIIETLHPGGRAAVVVPD  314 (541)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEH
T ss_pred             HHHHHHHHHhCCCCEEEEEecC
Confidence            3788888889999999998763

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=83.58  E-value=0.43  Score=43.95  Aligned_cols=20  Identities=35%  Similarity=0.270  Sum_probs=17.3

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ...+|+|+|||+|..|+.+.
T Consensus       286 ~~~~VLDlgcG~G~~~~~la  305 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLA  305 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHH
Confidence            34699999999999999876

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=83.37  E-value=0.71  Score=40.77  Aligned_cols=30  Identities=17%  Similarity=0.328  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCceEEEEec
Q 043411          184 WEQFQRDFSAFLSLRSEEIVSGGRMFLTFL  213 (242)
Q Consensus       184 ~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~  213 (242)
                      ..+-...+..+|..-..-|+|||+|++..|
T Consensus       217 vn~el~~l~~~l~~~~~~l~~ggr~~visf  246 (301)
T 1m6y_A          217 VNRELENLKEFLKKAEDLLNPGGRIVVISF  246 (301)
T ss_dssp             HHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred             HhcCHHHHHHHHHHHHHhhCCCCEEEEEec
Confidence            334556789999999999999999998875

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=83.06  E-value=0.56  Score=40.48  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=20.4

Q ss_pred             CCccEEeeecCCCCcchHHHHHHH
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKI   72 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~i   72 (242)
                      ...++|+|+|||+|.|++.+++..
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~   82 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAF   82 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEECCChHHHHHHHHHHH
Confidence            357999999999999999887554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d1m6ex_	359	c.66.1.35 (X:) Salicylic acid carboxyl methyltrans	1e-101

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

 Score =  296 bits (759), Expect = e-101
 Identities = 118/244 (48%), Positives = 160/244 (65%), Gaps = 7/244 (2%)

Query: 1   MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSS-SFPGCFNVADLGC 59
           M V  V  M GG GE SYA NS IQR V+S   P  E  I  ++S  +      +ADLGC
Sbjct: 1   MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60

Query: 60  SSGPNTLLVVSKIIDSIHKLYHQVNKK-LPEFQVFLNDLPGNDFNSIFESLPDFYERIKK 118
           SSGPN L  V+++I ++ +L  ++ ++  PE+Q+FLNDLPGNDFN+IF SLP        
Sbjct: 61  SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE-----N 115

Query: 119 DKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPS 178
           D  G CFI G+ GSFY RLFP   ++FIHSSYS+ WLS+VP  +E+NK +IY+  + P S
Sbjct: 116 DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQS 175

Query: 179 VCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQ 238
           V  A+++QFQ D + FL  R++E+V GGRM LT LGR   D +S +CC +W+LL  +L Q
Sbjct: 176 VLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQ 235

Query: 239 LANE 242
           + +E
Sbjct: 236 MVSE 239

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	100.0
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.17
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.05
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.0
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.94
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.94
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.91
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.84
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.83
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.82
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.8
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.79
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.78
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.75
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.7
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.7
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.7
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.67
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.63
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.6
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.6
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.57
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.51
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.49
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.42
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.41
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.26
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.24
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.22
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.12
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.12
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.11
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.09
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.03
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.95
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.95
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.94
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.9
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.88
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.88
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.82
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.8
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.76
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.73
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.71
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.69
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.69
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.64
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.6
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.48
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.48
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.47
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	96.93
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	96.8
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.8
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.62
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	96.6
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	95.87
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	95.49
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	95.35
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	95.23
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	95.21
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	94.4
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	93.85
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	93.67
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	93.53
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	93.36
d2h00a1	250	Methyltransferase 10 domain containing protein MET	92.89
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	92.42
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	91.22
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	90.76
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	90.21
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	89.53
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	87.99
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	86.31
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	85.57
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	83.86
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	81.7
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	80.96

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=100.00  E-value=6.4e-82  Score=580.37  Aligned_cols=237  Identities=50%  Similarity=0.884  Sum_probs=223.6

Q ss_pred             CCccccccccCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHhhhccC-CCCccEEeeecCCCCcchHHHHHHHHHHHHHH
Q 043411            1 MVVVNVPCMNGGGGETSYAKNSNIQRTVMSKAWPFLEETIKDMFSSS-FPGCFNVADLGCSSGPNTLLVVSKIIDSIHKL   79 (242)
Q Consensus         1 ~~~~~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~-~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~   79 (242)
                      |+++++|||+||+|++||++||..|++++..++|+|++||.+++... .+++++|||||||+|+||+.+++.||++|+++
T Consensus         1 m~~~~~l~M~gG~G~~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~   80 (359)
T d1m6ex_           1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEEL   80 (359)
T ss_dssp             CCCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHH
T ss_pred             CCccEeeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999986543 56789999999999999999999999999999


Q ss_pred             HhhhcC-CCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccC
Q 043411           80 YHQVNK-KLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKV  158 (242)
Q Consensus        80 ~~~~~~-~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~  158 (242)
                      |++.+. ++|+|||||||||+||||+||++|+...     ...++||++|||||||+||||++||||+||++||||||++
T Consensus        81 ~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~-----~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~v  155 (359)
T d1m6ex_          81 RKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-----DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQV  155 (359)
T ss_dssp             HHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-----SCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSC
T ss_pred             HHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc-----cCCCCeEEEecCCchhhhcCCCCceEEeeehhhhhhhhcC
Confidence            987664 5689999999999999999999998533     2456899999999999999999999999999999999999


Q ss_pred             CCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccCCCCCCCChhhHHHHHHHHHHHH
Q 043411          159 PENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIADPSSKDCCCLWELLTKSLIQ  238 (242)
Q Consensus       159 P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~l~~~l~d  238 (242)
                      |+.+.+|||+||+.++++++|.+||++||++||.+||++||+||+|||+|+++++||++.++.+++.+.+|++|.++|+|
T Consensus       156 P~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~d  235 (359)
T d1m6ex_         156 PIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQ  235 (359)
T ss_dssp             CSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHH
T ss_pred             CccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeccCCCCCCCCccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888788899999999999


Q ss_pred             HHcC
Q 043411          239 LANE  242 (242)
Q Consensus       239 mv~e  242 (242)
                      ||.|
T Consensus       236 mv~e  239 (359)
T d1m6ex_         236 MVSE  239 (359)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            9986

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.17  E-value=2.4e-11  Score=99.45  Aligned_cols=129  Identities=17%  Similarity=0.239  Sum_probs=83.8

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCC
Q 043411           20 KNSNIQRTVMSKAWPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPG   99 (242)
Q Consensus        20 ~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~   99 (242)
                      .+...++.-+..+.+++++.+        ++..+|+|+|||+|..|..+.        +.         -.+|+-.|+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~l--------~~~~~ILDiGcG~G~~~~~la--------~~---------~~~v~giD~S~   69 (226)
T d1ve3a1          15 INSQEYRSRIETLEPLLMKYM--------KKRGKVLDLACGVGGFSFLLE--------DY---------GFEVVGVDISE   69 (226)
T ss_dssp             TTSHHHHHHHHHHHHHHHHSC--------CSCCEEEEETCTTSHHHHHHH--------HT---------TCEEEEEESCH
T ss_pred             hhHHHHHHHHHHHHHHHHHhc--------CCCCEEEEECCCcchhhhhHh--------hh---------hcccccccccc
Confidence            344445555666777766643        345799999999999887654        11         24667777642


Q ss_pred             CchHHHhhcCchhHHhhhhcCCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHH
Q 043411          100 NDFNSIFESLPDFYERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSV  179 (242)
Q Consensus       100 NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v  179 (242)
                       +.-...+..      .........+   +-++.-+--++++++|+|+|+.++||++.                      
T Consensus        70 -~~i~~ak~~------~~~~~~~~~~---~~~d~~~l~~~~~~fD~I~~~~~l~~~~~----------------------  117 (226)
T d1ve3a1          70 -DMIRKAREY------AKSRESNVEF---IVGDARKLSFEDKTFDYVIFIDSIVHFEP----------------------  117 (226)
T ss_dssp             -HHHHHHHHH------HHHTTCCCEE---EECCTTSCCSCTTCEEEEEEESCGGGCCH----------------------
T ss_pred             -cchhhhhhh------hccccccccc---cccccccccccCcCceEEEEecchhhCCh----------------------
Confidence             222222211      1111112223   33456555578899999999999999632                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecc
Q 043411          180 CQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       180 ~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                               .|+..+|+.-++-|+|||+|++.+..
T Consensus       118 ---------~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         118 ---------LELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             ---------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ---------hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence                     35666899999999999999998764

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.4e-10  Score=99.35  Aligned_cols=146  Identities=12%  Similarity=0.189  Sum_probs=83.0

Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHhhhccC--CCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEe
Q 043411           17 SYAKNSNIQRTVMSKAWPFLEETIKDMFSSS--FPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFL   94 (242)
Q Consensus        17 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~--~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~   94 (242)
                      .|.+||...+...    +++++.+..+....  ....++|+|+|||+|..|..++..+    ..+.     ....+.++-
T Consensus         9 ~~~~~s~~~~~~~----~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l----~~~~-----~~~~~~~~~   75 (280)
T d1jqea_           9 RFLNHSTEHQCMQ----EFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKV----QAQY-----PGVCINNEV   75 (280)
T ss_dssp             HHHHTBSHHHHHH----HHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHH----HHHS-----TTCEEEEEE
T ss_pred             HHHHhCcHHHHHH----HHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHh----hhhc-----cCCceEEEE
Confidence            3555555544333    33344444332222  2346899999999999988887544    2331     123456666


Q ss_pred             cCCCCCchHHHhhcCchhHHhhhh-cCCCCceeecccccc------ccccCCCCceeEEEcccceeecccCCCcccCCCC
Q 043411           95 NDLPGNDFNSIFESLPDFYERIKK-DKFGPCFIAGMLGSF------YQRLFPSRGINFIHSSYSVHWLSKVPENLENNKR  167 (242)
Q Consensus        95 nDLp~NDFn~lf~~l~~~~~~l~~-~~~~~~f~~~vpgSF------y~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg  167 (242)
                      -|.- -.+-..++..      +.. .....+-+......+      ...-++++++|+|++..++||+.+.+.       
T Consensus        76 vD~s-~~~l~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~-------  141 (280)
T d1jqea_          76 VEPS-AEQIAKYKEL------VAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPA-------  141 (280)
T ss_dssp             ECCC-HHHHHHHHHH------HTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHH-------
T ss_pred             EeCc-HHHHHHHHHH------HhhccccccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHH-------
Confidence            6743 1222222211      110 001111111111111      134568899999999999999755332       


Q ss_pred             ceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccc
Q 043411          168 DIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGR  215 (242)
Q Consensus       168 ~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~  215 (242)
                                                +|+.-.+-|+|||.|+++....
T Consensus       142 --------------------------~l~~l~~~LkpgG~l~i~~~~~  163 (280)
T d1jqea_         142 --------------------------TLKFFHSLLGTNAKMLIIVVSG  163 (280)
T ss_dssp             --------------------------HHHHHHHTEEEEEEEEEEEECT
T ss_pred             --------------------------HHHHHHhhCCCCCEEEEEEecC
Confidence                                      7888888999999999988754

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.00  E-value=6.8e-10  Score=94.79  Aligned_cols=109  Identities=16%  Similarity=0.182  Sum_probs=70.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..|..++...               . -+|..-|... .|-...+      .....  .+.  +..+
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~---------------~-~~v~~vD~s~-~~l~~a~------~~~~~--~~~--~~~~  145 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKL---------------Y-ATTDLLEPVK-HMLEEAK------RELAG--MPV--GKFI  145 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH---------------C-SEEEEEESCH-HHHHHHH------HHTTT--SSE--EEEE
T ss_pred             CCCeEEEecccCChhhHHHHhhc---------------C-ceEEEEcCCH-HHHHhhh------ccccc--ccc--ceeE
Confidence            57899999999999988765322               1 2455555541 2222211      11111  111  1123


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+--++++++|+|+|.+++||+++                               .|+..||+..++-|+|||+++
T Consensus       146 ~~d~~~~~~~~~~fD~I~~~~vl~hl~d-------------------------------~d~~~~l~~~~~~LkpgG~ii  194 (254)
T d1xtpa_         146 LASMETATLPPNTYDLIVIQWTAIYLTD-------------------------------ADFVKFFKHCQQALTPNGYIF  194 (254)
T ss_dssp             ESCGGGCCCCSSCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             EccccccccCCCccceEEeeccccccch-------------------------------hhhHHHHHHHHHhcCCCcEEE
Confidence            3466555567899999999999999754                               355669999999999999999


Q ss_pred             EEecccC
Q 043411          210 LTFLGRS  216 (242)
Q Consensus       210 l~~~g~~  216 (242)
                      +......
T Consensus       195 i~e~~~~  201 (254)
T d1xtpa_         195 FKENCST  201 (254)
T ss_dssp             EEEEBC-
T ss_pred             EEecCCC
Confidence            9765443

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.94  E-value=6.5e-10  Score=91.60  Aligned_cols=110  Identities=16%  Similarity=0.175  Sum_probs=70.3

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ....+|+|+|||+|..|+.+.        ++    +     -+|+--|+-. ++-...+      ........+++  ..
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~--------~~----~-----~~v~gvD~s~-~~i~~A~------~~~~~~~~~~i--~~   67 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFA--------PF----V-----KKVVAFDLTE-DILKVAR------AFIEGNGHQQV--EY   67 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHG--------GG----S-----SEEEEEESCH-HHHHHHH------HHHHHTTCCSE--EE
T ss_pred             CCcCEEEEecccCcHHHHHHH--------Hh----C-----CEEEEEECCH-HHHhhhh------hcccccccccc--cc
Confidence            346899999999999887654        11    1     2455566642 2211111      11111122232  12


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +-+++.+--+|++++|+++|..++||+.+..                                 .+|+.-++-|+|||+|
T Consensus        68 ~~~d~~~l~~~~~~fD~v~~~~~l~~~~d~~---------------------------------~~l~~~~r~LkpgG~l  114 (231)
T d1vl5a_          68 VQGDAEQMPFTDERFHIVTCRIAAHHFPNPA---------------------------------SFVSEAYRVLKKGGQL  114 (231)
T ss_dssp             EECCC-CCCSCTTCEEEEEEESCGGGCSCHH---------------------------------HHHHHHHHHEEEEEEE
T ss_pred             cccccccccccccccccccccccccccCCHH---------------------------------HHHHHHHHhcCCCcEE
Confidence            3347765557999999999999999975422                                 2788888889999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++..+...+
T Consensus       115 ~i~~~~~~~  123 (231)
T d1vl5a_         115 LLVDNSAPE  123 (231)
T ss_dssp             EEEEEEBCS
T ss_pred             EEEeCCCCC
Confidence            998776543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.94  E-value=7.2e-10  Score=92.37  Aligned_cols=109  Identities=16%  Similarity=0.182  Sum_probs=68.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      .--||+|+|||+|..|..+.+..                 .+|+--|+.. +.-...+      +........++  ..+
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~~-----------------~~v~gvD~S~-~~l~~A~------~~~~~~~~~~~--~~~   69 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPYV-----------------QECIGVDATK-EMVEVAS------SFAQEKGVENV--RFQ   69 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGS-----------------SEEEEEESCH-HHHHHHH------HHHHHHTCCSE--EEE
T ss_pred             CCCEEEEeCCcCcHHHHHHHHhC-----------------CeEEEEeCCh-hhhhhhh------hhhcccccccc--ccc
Confidence            35799999999999988765211                 2344444442 1111111      11111112222  124


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      -++..+--||++++|+++|+.++||+.+.+.                                 +|+...+-|+|||+++
T Consensus        70 ~~d~~~~~~~~~~fD~v~~~~~l~~~~d~~~---------------------------------~l~~~~r~LkpgG~~~  116 (234)
T d1xxla_          70 QGTAESLPFPDDSFDIITCRYAAHHFSDVRK---------------------------------AVREVARVLKQDGRFL  116 (234)
T ss_dssp             ECBTTBCCSCTTCEEEEEEESCGGGCSCHHH---------------------------------HHHHHHHHEEEEEEEE
T ss_pred             ccccccccccccccceeeeeceeecccCHHH---------------------------------HHHHHHHeeCCCcEEE
Confidence            4466555579999999999999999755322                                 7888888899999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      ++.....+
T Consensus       117 ~~~~~~~~  124 (234)
T d1xxla_         117 LVDHYAPE  124 (234)
T ss_dssp             EEEECBCS
T ss_pred             EEEcCCCC
Confidence            98776543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.91  E-value=2.6e-09  Score=88.51  Aligned_cols=115  Identities=19%  Similarity=0.209  Sum_probs=74.1

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +...+|+|+|||+|..|+.+.+..             ..|..+|+--|+.. +.-...+.      .+.... ....+..
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~-------------~~~~~~v~giD~S~-~ml~~A~~------~~~~~~-~~~~~~~   96 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQ-PMVERCRQ------HIAAYH-SEIPVEI   96 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTC-------------CCSSCEEEEECSCH-HHHHHHHH------HHHTSC-CSSCEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhh-------------cCCCCceEEeCCCH-HHHHHHHH------HhHhhc-ccchhhh
Confidence            345799999999999988776322             23568888888862 22222211      111111 1222223


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      ..+++.+  +|....|++++++++||++.                               +|+..+|+.-.+-|+|||.|
T Consensus        97 ~~~d~~~--~~~~~~d~i~~~~~l~~~~~-------------------------------~d~~~~l~~i~~~LkpgG~l  143 (225)
T d1im8a_          97 LCNDIRH--VEIKNASMVILNFTLQFLPP-------------------------------EDRIALLTKIYEGLNPNGVL  143 (225)
T ss_dssp             ECSCTTT--CCCCSEEEEEEESCGGGSCG-------------------------------GGHHHHHHHHHHHEEEEEEE
T ss_pred             ccchhhc--cccccceeeEEeeeccccCh-------------------------------hhHHHHHHHHHHhCCCCcee
Confidence            3345422  46677899999999999753                               24445899999999999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++..+...+
T Consensus       144 i~~~~~~~~  152 (225)
T d1im8a_         144 VLSEKFRFE  152 (225)
T ss_dssp             EEEEECCCS
T ss_pred             ecccccccc
Confidence            998766544

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.84  E-value=3.8e-09  Score=90.44  Aligned_cols=112  Identities=15%  Similarity=0.066  Sum_probs=70.4

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ++..+|+|+|||+|..+..+.+..                ..+|+--|+.. ......+.... ...+    ..++  ..
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~----------------~~~v~gvD~s~-~~i~~a~~~~~-~~gl----~~~v--~~  121 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKF----------------GVSIDCLNIAP-VQNKRNEEYNN-QAGL----ADNI--TV  121 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH----------------CCEEEEEESCH-HHHHHHHHHHH-HHTC----TTTE--EE
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccC----------------CcEEEEEeccc-hhhhhhhcccc-cccc----cccc--cc
Confidence            456899999999998877665221                14555556541 11111111110 0011    1122  23


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++.+--+|++++|+|+|..++||+.+.                                 ..+|+.-.+-|+|||+|
T Consensus       122 ~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~---------------------------------~~~l~~~~~~LkpgG~l  168 (282)
T d2o57a1         122 KYGSFLEIPCEDNSYDFIWSQDAFLHSPDK---------------------------------LKVFQECARVLKPRGVM  168 (282)
T ss_dssp             EECCTTSCSSCTTCEEEEEEESCGGGCSCH---------------------------------HHHHHHHHHHEEEEEEE
T ss_pred             cccccccccccccccchhhccchhhhccCH---------------------------------HHHHHHHHHhcCCCcEE
Confidence            445886666799999999999999886432                                 12777888889999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      +++.+....
T Consensus       169 ~~~~~~~~~  177 (282)
T d2o57a1         169 AITDPMKED  177 (282)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEeecCC
Confidence            998765543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.83  E-value=1.8e-08  Score=83.64  Aligned_cols=120  Identities=19%  Similarity=0.276  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchh
Q 043411           33 WPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDF  112 (242)
Q Consensus        33 ~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~  112 (242)
                      .+.+++.++...   .++.-+|+|+|||+|..|+.+.+        +         -.+|+--|+.. +.-...      
T Consensus        27 ~~~~~~~~~~~~---~~~~~~iLDiGcGtG~~~~~l~~--------~---------~~~v~gvD~s~-~mi~~a------   79 (251)
T d1wzna1          27 IDFVEEIFKEDA---KREVRRVLDLACGTGIPTLELAE--------R---------GYEVVGLDLHE-EMLRVA------   79 (251)
T ss_dssp             HHHHHHHHHHTC---SSCCCEEEEETCTTCHHHHHHHH--------T---------TCEEEEEESCH-HHHHHH------
T ss_pred             HHHHHHHHHHhc---CCCCCEEEEeCCCCCccchhhcc--------c---------ceEEEEEeecc-cccccc------
Confidence            344444444332   23456999999999998876652        1         14677777762 111111      


Q ss_pred             HHhhhhcCCCCceeeccccccccccCCCCceeEEEcc-cceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHH
Q 043411          113 YERIKKDKFGPCFIAGMLGSFYQRLFPSRGINFIHSS-YSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDF  191 (242)
Q Consensus       113 ~~~l~~~~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss-~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~  191 (242)
                      ++.....+.+-.|   +.+++ +.+-+++++|+|+|. .++||++.                               .|+
T Consensus        80 ~~~~~~~~~~i~~---~~~d~-~~l~~~~~fD~I~~~~~~~~~~~~-------------------------------~~~  124 (251)
T d1wzna1          80 RRKAKERNLKIEF---LQGDV-LEIAFKNEFDAVTMFFSTIMYFDE-------------------------------EDL  124 (251)
T ss_dssp             HHHHHHTTCCCEE---EESCG-GGCCCCSCEEEEEECSSGGGGSCH-------------------------------HHH
T ss_pred             ccccccccccchh---eehhh-hhcccccccchHhhhhhhhhcCCh-------------------------------HHH
Confidence            1111111112233   34466 566677899999986 57788632                               355


Q ss_pred             HHHHHHHHhhhccCceEEEEecc
Q 043411          192 SAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       192 ~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                      ..+|+..++-|+|||++++.+..
T Consensus       125 ~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         125 RKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCcEEEEEecc
Confidence            66999999999999999997754

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=2e-09  Score=88.84  Aligned_cols=100  Identities=19%  Similarity=0.206  Sum_probs=65.3

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ++..+|+|+|||+|..+..+.        +.         -.+|+--|+..           ..-...+. +....++. 
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~giD~s~-----------~~l~~a~~-~~~~~~~~-   90 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQ--------ER---------GFEVVLVDPSK-----------EMLEVARE-KGVKNVVE-   90 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHH--------TT---------TCEEEEEESCH-----------HHHHHHHH-HTCSCEEE-
T ss_pred             CCCCEEEEECCCCchhccccc--------cc---------ceEEEEeeccc-----------cccccccc-cccccccc-
Confidence            456799999999999988664        11         24667777762           11111111 11233433 


Q ss_pred             cccccccccCCCCceeEEEcc-cceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          129 MLGSFYQRLFPSRGINFIHSS-YSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss-~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                        ++..+--+|++++|+|+|. ..+||+.+...                                 +|+.-.+=|+|||+
T Consensus        91 --~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~---------------------------------~l~~i~r~Lk~gG~  135 (246)
T d2avna1          91 --AKAEDLPFPSGAFEAVLALGDVLSYVENKDK---------------------------------AFSEIRRVLVPDGL  135 (246)
T ss_dssp             --CCTTSCCSCTTCEEEEEECSSHHHHCSCHHH---------------------------------HHHHHHHHEEEEEE
T ss_pred             --ccccccccccccccceeeecchhhhhhhHHH---------------------------------HHHHHHhhcCcCcE
Confidence              3665544889999999985 57899654222                                 67777778899999


Q ss_pred             EEEEec
Q 043411          208 MFLTFL  213 (242)
Q Consensus       208 lvl~~~  213 (242)
                      +++++.
T Consensus       136 ~ii~~~  141 (246)
T d2avna1         136 LIATVD  141 (246)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999875

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.80  E-value=4.5e-09  Score=85.47  Aligned_cols=110  Identities=16%  Similarity=0.186  Sum_probs=69.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      .+.+|+|+|||+|.+++.+.+        +         -.+|+--|+...    ..+..   +.........+  +...
T Consensus        30 ~~grvLDiGcG~G~~~~~la~--------~---------g~~v~gvD~s~~----~l~~a---~~~~~~~~~~~--~~~~   83 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAA--------N---------GYDVTAWDKNPA----SMANL---ERIKAAEGLDN--LQTD   83 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHH--------T---------TCEEEEEESCHH----HHHHH---HHHHHHTTCTT--EEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHH--------H---------hhhhccccCcHH----HHHHH---HHHhhhccccc--hhhh
Confidence            356999999999999987752        2         145565566521    01101   00111111112  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      -.++ ..+.|++++|+|++..++|++.   .                            .++..+|+.-++-|+|||+++
T Consensus        84 ~~d~-~~~~~~~~fD~I~~~~~~~~~~---~----------------------------~~~~~~l~~~~~~L~pgG~~~  131 (198)
T d2i6ga1          84 LVDL-NTLTFDGEYDFILSTVVMMFLE---A----------------------------QTIPGLIANMQRCTKPGGYNL  131 (198)
T ss_dssp             ECCT-TTCCCCCCEEEEEEESCGGGSC---T----------------------------THHHHHHHHHHHTEEEEEEEE
T ss_pred             heec-ccccccccccEEEEeeeeecCC---H----------------------------HHHHHHHHHHHHHcCCCcEEE
Confidence            4466 5666889999999999999853   2                            134458999999999999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      +..+....
T Consensus       132 ~~~~~~~~  139 (198)
T d2i6ga1         132 IVAAMDTP  139 (198)
T ss_dssp             EEEEBC--
T ss_pred             EEEecCCc
Confidence            98876544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=4.4e-09  Score=88.17  Aligned_cols=110  Identities=10%  Similarity=-0.027  Sum_probs=71.7

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      --+|+|+|||+|..+..+.        +++       + ..|+--|+.. .+-.+.+...      ......+ -+..+.
T Consensus        34 g~~VLDiGCG~G~~~~~la--------~~~-------~-~~v~GvD~s~-~~~~~ar~~~------~~~gl~~-~v~~~~   89 (245)
T d1nkva_          34 GTRILDLGSGSGEMLCTWA--------RDH-------G-ITGTGIDMSS-LFTAQAKRRA------EELGVSE-RVHFIH   89 (245)
T ss_dssp             TCEEEEETCTTCHHHHHHH--------HHT-------C-CEEEEEESCH-HHHHHHHHHH------HHTTCTT-TEEEEE
T ss_pred             CCEEEEEcCCCCHHHHHHH--------Hhc-------C-CEEEEEeccc-chhhHHHHHH------HHhhccc-cchhhh
Confidence            4799999999998877554        221       2 5666667642 2222222211      0111111 111234


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      +++ ..++|++++|+++|..++||+.+.+.                                 +|+.-.+-|+|||++++
T Consensus        90 ~d~-~~~~~~~~fD~v~~~~~~~~~~d~~~---------------------------------~l~~~~r~LkPGG~l~i  135 (245)
T d1nkva_          90 NDA-AGYVANEKCDVAACVGATWIAGGFAG---------------------------------AEELLAQSLKPGGIMLI  135 (245)
T ss_dssp             SCC-TTCCCSSCEEEEEEESCGGGTSSSHH---------------------------------HHHHHTTSEEEEEEEEE
T ss_pred             hHH-hhccccCceeEEEEEehhhccCCHHH---------------------------------HHHHHHHHcCcCcEEEE
Confidence            577 45689999999999999999776443                                 88888999999999999


Q ss_pred             EecccCCC
Q 043411          211 TFLGRSIA  218 (242)
Q Consensus       211 ~~~g~~~~  218 (242)
                      +..+....
T Consensus       136 ~~~~~~~~  143 (245)
T d1nkva_         136 GEPYWRQL  143 (245)
T ss_dssp             EEEEETTC
T ss_pred             EeccccCC
Confidence            98765443

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=8.1e-09  Score=86.15  Aligned_cols=60  Identities=10%  Similarity=-0.079  Sum_probs=47.5

Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +..+.....++.+++|+++|..++||+...+                             .|+..+|+..++-|+|||+|
T Consensus       139 ~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~-----------------------------~~~~~~l~~i~~~LkpGG~l  189 (257)
T d2a14a1         139 VHLGNPLAPAVLPLADCVLTLLAMECACCSL-----------------------------DAYRAALCNLASLLKPGGHL  189 (257)
T ss_dssp             TTSSSTTTTCCCCCEEEEEEESCHHHHCSSH-----------------------------HHHHHHHHHHHTTEEEEEEE
T ss_pred             cccccccccccCCcccEEeehhhHHHhcccH-----------------------------HHHHHHHHHHHhccCCCcEE
Confidence            3344445678899999999999999975422                             36677999999999999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      +++.+...+
T Consensus       190 i~~~~~~~~  198 (257)
T d2a14a1         190 VTTVTLRLP  198 (257)
T ss_dssp             EEEEESSCC
T ss_pred             EEEEecccc
Confidence            999886543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=7.8e-09  Score=85.44  Aligned_cols=112  Identities=13%  Similarity=0.087  Sum_probs=72.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|+|||+|..+..+++.               .+ -+|+.-|+.. ..-...+.      ......  .-.+.-+
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~---------------~~-~~v~~vD~s~-~~l~~ak~------~~~~~~--~~~~~f~  114 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLP---------------LF-REVDMVDITE-DFLVQAKT------YLGEEG--KRVRNYF  114 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTT---------------TC-SEEEEEESCH-HHHHHHHH------HTGGGG--GGEEEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHh---------------cC-CEEEEeecCH-HHhhcccc------cccccc--ccccccc
Confidence            4679999999999988766411               12 3566666652 11111111      111100  1112234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++.+-.++++++|+|++..++|++.+                               .|+..+|+.-++-|+|||.++
T Consensus       115 ~~d~~~~~~~~~~fD~I~~~~~l~h~~~-------------------------------~~~~~~l~~i~~~Lk~~G~~~  163 (222)
T d2ex4a1         115 CCGLQDFTPEPDSYDVIWIQWVIGHLTD-------------------------------QHLAEFLRRCKGSLRPNGIIV  163 (222)
T ss_dssp             ECCGGGCCCCSSCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccccccccccccccccccccccchh-------------------------------hhhhhHHHHHHHhcCCcceEE
Confidence            5588777778999999999999999654                               234458888889999999999


Q ss_pred             EEecccCC
Q 043411          210 LTFLGRSI  217 (242)
Q Consensus       210 l~~~g~~~  217 (242)
                      +......+
T Consensus       164 i~~~~~~~  171 (222)
T d2ex4a1         164 IKDNMAQE  171 (222)
T ss_dssp             EEEEEBSS
T ss_pred             EEEccccc
Confidence            98765444

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.70  E-value=2.4e-08  Score=81.00  Aligned_cols=55  Identities=11%  Similarity=0.195  Sum_probs=42.7

Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.+++-+--++++++|+|+|..+|||+.+..                                 .+|+.-.+-|+|||+|
T Consensus        78 ~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~---------------------------------~~l~~~~~~L~pgG~l  124 (208)
T d1vlma_          78 LKGTAENLPLKDESFDFALMVTTICFVDDPE---------------------------------RALKEAYRILKKGGYL  124 (208)
T ss_dssp             EECBTTBCCSCTTCEEEEEEESCGGGSSCHH---------------------------------HHHHHHHHHEEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccc---------------------------------cchhhhhhcCCCCceE
Confidence            4446655557889999999999999975411                                 2777777888999999


Q ss_pred             EEEecccC
Q 043411          209 FLTFLGRS  216 (242)
Q Consensus       209 vl~~~g~~  216 (242)
                      ++..+...
T Consensus       125 ~i~~~~~~  132 (208)
T d1vlma_         125 IVGIVDRE  132 (208)
T ss_dssp             EEEEECSS
T ss_pred             EEEecCCc
Confidence            99988654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.70  E-value=1.6e-08  Score=85.51  Aligned_cols=112  Identities=17%  Similarity=0.215  Sum_probs=74.0

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ...-+|+|+|||+|..++.+.+        +       .|..+++.-|+|  +.-...+.      ...... -..-+..
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~--------~-------~p~~~~~~~D~~--~~~~~a~~------~~~~~~-~~~rv~~  134 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIAR--------R-------APHVSATVLEMA--GTVDTARS------YLKDEG-LSDRVDV  134 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECT--THHHHHHH------HHHHTT-CTTTEEE
T ss_pred             ccCCEEEEeCCCCCHHHHHHHH--------h-------cceeEEEEccCH--HHHHHHHH------HHHHhh-cccchhh
Confidence            4567999999999999887762        2       156888888998  32222211      111110 1122345


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      ++++|++. .| .+.|++++++.||.+++                               ++..++|+.-++-|+|||+|
T Consensus       135 ~~~D~~~~-~~-~~~D~v~~~~vlh~~~d-------------------------------~~~~~~L~~~~~~LkPGG~l  181 (253)
T d1tw3a2         135 VEGDFFEP-LP-RKADAIILSFVLLNWPD-------------------------------HDAVRILTRCAEALEPGGRI  181 (253)
T ss_dssp             EECCTTSC-CS-SCEEEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHTEEEEEEE
T ss_pred             ccccchhh-cc-cchhheeeccccccCCc-------------------------------hhhHHHHHHHHHhcCCCcEE
Confidence            77898763 33 56899999999986432                               23344899999999999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++.-.....
T Consensus       182 ~i~e~~~~~  190 (253)
T d1tw3a2         182 LIHERDDLH  190 (253)
T ss_dssp             EEEECCBCG
T ss_pred             EEEeccCCC
Confidence            998764433

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=3.1e-08  Score=84.72  Aligned_cols=100  Identities=19%  Similarity=0.223  Sum_probs=64.2

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      .+..+|+|+|||+|..+..+.+..               |..+++--|+..           ..-....+...+-.|.  
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~---------------~~~~~~giD~s~-----------~~~~~a~~~~~~~~~~--  134 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADAL---------------PEITTFGLDVSK-----------VAIKAAAKRYPQVTFC--  134 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTC---------------TTSEEEEEESCH-----------HHHHHHHHHCTTSEEE--
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHC---------------CCCEEEEecchH-----------hhhhhhhcccccccce--
Confidence            457899999999999988775221               356777777652           1101111111122333  


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                       -++...--++++++|++++..++|++.                                 ++       ++-|||||+|
T Consensus       135 -~~d~~~l~~~~~sfD~v~~~~~~~~~~---------------------------------e~-------~rvLkpgG~l  173 (268)
T d1p91a_         135 -VASSHRLPFSDTSMDAIIRIYAPCKAE---------------------------------EL-------ARVVKPGGWV  173 (268)
T ss_dssp             -ECCTTSCSBCTTCEEEEEEESCCCCHH---------------------------------HH-------HHHEEEEEEE
T ss_pred             -eeehhhccCCCCCEEEEeecCCHHHHH---------------------------------HH-------HHHhCCCcEE
Confidence             347767778999999999977766521                                 11       2237999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      +++.++.+.
T Consensus       174 ~~~~p~~~~  182 (268)
T d1p91a_         174 ITATPGPRH  182 (268)
T ss_dssp             EEEEECTTT
T ss_pred             EEEeeCCcc
Confidence            999987654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.67  E-value=5e-09  Score=83.08  Aligned_cols=130  Identities=9%  Similarity=-0.037  Sum_probs=75.6

Q ss_pred             HHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCc-hh
Q 043411           34 PFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLP-DF  112 (242)
Q Consensus        34 ~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~-~~  112 (242)
                      |-|++.+.++.   .++..||+|+|||+|.++..+++        +         -++|+-.|+..+- -...+... ..
T Consensus         7 ~~~~~~~~~l~---~~~~~rvLd~GCG~G~~a~~la~--------~---------G~~V~gvD~S~~~-i~~a~~~~~~~   65 (201)
T d1pjza_           7 KDLQQYWSSLN---VVPGARVLVPLCGKSQDMSWLSG--------Q---------GYHVVGAELSEAA-VERYFTERGEQ   65 (201)
T ss_dssp             HHHHHHHHHHC---CCTTCEEEETTTCCSHHHHHHHH--------H---------CCEEEEEEECHHH-HHHHHHHHCSC
T ss_pred             HHHHHHHHHcC---CCCCCEEEEecCcCCHHHHHHHH--------c---------CCceEeecccHHH-HHHHHHHhccc
Confidence            44555665552   34568999999999999997762        2         1556666665311 11111110 00


Q ss_pred             HHhh--hh----cCCCCceeecccccccccc-CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHH
Q 043411          113 YERI--KK----DKFGPCFIAGMLGSFYQRL-FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWE  185 (242)
Q Consensus       113 ~~~l--~~----~~~~~~f~~~vpgSFy~~l-~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~  185 (242)
                      ....  ..    ......|   +-+++..-- .+..++|+++++.++|++..                            
T Consensus        66 ~~~~~~~~~~~~~~~~~~~---~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~----------------------------  114 (201)
T d1pjza_          66 PHITSQGDFKVYAAPGIEI---WCGDFFALTARDIGHCAAFYDRAAMIALPA----------------------------  114 (201)
T ss_dssp             SEEEEETTEEEEECSSSEE---EEECCSSSTHHHHHSEEEEEEESCGGGSCH----------------------------
T ss_pred             cchhhhhhhhhccccccce---ecccccccccccccceeEEEEEeeeEecch----------------------------
Confidence            0000  00    0001122   223443321 24568999999999999554                            


Q ss_pred             HHHHHHHHHHHHHHhhhccCceEEEEecccCCC
Q 043411          186 QFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIA  218 (242)
Q Consensus       186 q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~  218 (242)
                         .++..+++.-++-|+|||++++..+.....
T Consensus       115 ---~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~  144 (201)
T d1pjza_         115 ---DMRERYVQHLEALMPQACSGLLITLEYDQA  144 (201)
T ss_dssp             ---HHHHHHHHHHHHHSCSEEEEEEEEESSCSS
T ss_pred             ---hhhHHHHHHHHHhcCCCcEEEEEEcccccc
Confidence               245558888889999999999988876554

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.63  E-value=4.1e-08  Score=83.50  Aligned_cols=111  Identities=17%  Similarity=0.183  Sum_probs=72.9

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +..-+|+|+|||+|..+..+++        +       .|..+++.-|+|  +.-...+.      .+.... ..-.+..
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~--------~-------~P~~~~~~~Dlp--~~~~~a~~------~~~~~~-~~~ri~~  135 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIAL--------R-------APHLRGTLVELA--GPAERARR------RFADAG-LADRVTV  135 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECH--HHHHHHHH------HHHHTT-CTTTEEE
T ss_pred             ccCCEEEEECCCCCHHHHHHHH--------h-------hcCcEEEEecCh--HHHHHHHH------HHhhcC-Ccceeee
Confidence            3456899999999988777662        2       156888888998  33322221      111111 1123445


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      ++++|+..+ |. +.|+++..+.||=++   .                            ++...+|+.-++-|+|||++
T Consensus       136 ~~~d~~~~~-p~-~~D~v~~~~vLh~~~---d----------------------------~~~~~lL~~i~~~LkpgG~l  182 (256)
T d1qzza2         136 AEGDFFKPL-PV-TADVVLLSFVLLNWS---D----------------------------EDALTILRGCVRALEPGGRL  182 (256)
T ss_dssp             EECCTTSCC-SC-CEEEEEEESCGGGSC---H----------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             eeeeccccc-cc-cchhhhccccccccC---c----------------------------HHHHHHHHHHHhhcCCccee
Confidence            778998643 44 589999999998322   1                            24445899999999999999


Q ss_pred             EEEecccC
Q 043411          209 FLTFLGRS  216 (242)
Q Consensus       209 vl~~~g~~  216 (242)
                      ++.-.-..
T Consensus       183 lI~d~~~~  190 (256)
T d1qzza2         183 LVLDRADV  190 (256)
T ss_dssp             EEEECCH-
T ss_pred             EEEEeccC
Confidence            99865443

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.60  E-value=1.6e-08  Score=87.00  Aligned_cols=107  Identities=11%  Similarity=0.078  Sum_probs=66.4

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      .++.+|+|+|||+|..+..+.+.+              +....|+--|+.. +.-...      ++..........|   
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~--------------~~~~~v~giD~s~-~~l~~a------~~~~~~~~~~~~f---   81 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLL--------------PEGSKYTGIDSGE-TLLAEA------RELFRLLPYDSEF---   81 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTS--------------CTTCEEEEEECCH-HHHHHH------HHHHHSSSSEEEE---
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhC--------------CCCCEEEEEecch-hHhhhh------hcccccccccccc---
Confidence            468999999999998887665211              1124566666642 111111      1111111111123   


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +-+++. .+-+++++|+++|..++||+++.+.                                 +|+.-.+-|+|||++
T Consensus        82 ~~~d~~-~~~~~~~fD~v~~~~~l~~~~d~~~---------------------------------~l~~~~~~LkpgG~l  127 (281)
T d2gh1a1          82 LEGDAT-EIELNDKYDIAICHAFLLHMTTPET---------------------------------MLQKMIHSVKKGGKI  127 (281)
T ss_dssp             EESCTT-TCCCSSCEEEEEEESCGGGCSSHHH---------------------------------HHHHHHHTEEEEEEE
T ss_pred             cccccc-cccccCCceEEEEehhhhcCCCHHH---------------------------------HHHHHHHHcCcCcEE
Confidence            334664 4445678999999999999765222                                 788888889999999


Q ss_pred             EEEec
Q 043411          209 FLTFL  213 (242)
Q Consensus       209 vl~~~  213 (242)
                      ++...
T Consensus       128 ii~~~  132 (281)
T d2gh1a1         128 ICFEP  132 (281)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            98775

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.60  E-value=9e-08  Score=79.73  Aligned_cols=108  Identities=16%  Similarity=0.210  Sum_probs=67.5

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +++-+|+|+|||+|..|+.+.        ++         -.+++--|+.. +.-...      ++.......+--|   
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~--------~~---------g~~v~GvD~S~-~ml~~A------~~~~~~~~~~v~~---   88 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLC--------PK---------FKNTWAVDLSQ-EMLSEA------ENKFRSQGLKPRL---   88 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHG--------GG---------SSEEEEECSCH-HHHHHH------HHHHHHTTCCCEE---
T ss_pred             CCCCeEEEEeCcCCHHHHHHH--------Hh---------CCccEeeccch-hhhhhc------cccccccCcccee---
Confidence            456799999999999988664        11         14566667652 111111      1111111112223   


Q ss_pred             cccccccccCCCCceeEEEcc-cceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          129 MLGSFYQRLFPSRGINFIHSS-YSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss-~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      +-+++. .+-+++++|+|+|. .+++|+.+                              .+|+.++|+.-++-|+|||+
T Consensus        89 ~~~d~~-~~~~~~~fD~i~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~LkpgG~  137 (246)
T d1y8ca_          89 ACQDIS-NLNINRKFDLITCCLDSTNYIID------------------------------SDDLKKYFKAVSNHLKEGGV  137 (246)
T ss_dssp             ECCCGG-GCCCSCCEEEEEECTTGGGGCCS------------------------------HHHHHHHHHHHHTTEEEEEE
T ss_pred             eccchh-hhcccccccccceeeeeeeccCC------------------------------HHHHHHHHHHHHHhCCCCeE
Confidence            334663 34457899999975 56776433                              14677799999999999999


Q ss_pred             EEEEecc
Q 043411          208 MFLTFLG  214 (242)
Q Consensus       208 lvl~~~g  214 (242)
                      |++.+..
T Consensus       138 ~i~~~~~  144 (246)
T d1y8ca_         138 FIFDINS  144 (246)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeCC
Confidence            9987653

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.57  E-value=2.4e-07  Score=77.69  Aligned_cols=112  Identities=18%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ++.-+|+|+|||+|..+..+.        +.    +    .-+|+--|+... .      +...+......+ ...-+..
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~--------~~----~----~~~v~GiD~S~~-~------l~~A~~r~~~~~-~~~~v~f   78 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYE--------RA----G----IGEYYGVDIAEV-S------INDARVRARNMK-RRFKVFF   78 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHH--------HH----T----CSEEEEEESCHH-H------HHHHHHHHHTSC-CSSEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHH--------Hc----C----CCeEEEecCCHH-H------HHHHHHHHHhcC-CCcceEE
Confidence            345799999999998876554        11    1    135667776621 0      010111111111 1111112


Q ss_pred             cccccccccC-CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          129 MLGSFYQRLF-PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       129 vpgSFy~~l~-p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      .-++.....+ +.+++|+|+|..++||+-..                             .+++..+|+.-++-|+|||+
T Consensus        79 ~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~-----------------------------~~~~~~~l~~i~~~Lk~gG~  129 (252)
T d1ri5a_          79 RAQDSYGRHMDLGKEFDVISSQFSFHYAFST-----------------------------SESLDIAQRNIARHLRPGGY  129 (252)
T ss_dssp             EESCTTTSCCCCSSCEEEEEEESCGGGGGSS-----------------------------HHHHHHHHHHHHHTEEEEEE
T ss_pred             EEcchhhhcccccccceEEEEcceeeecCCC-----------------------------HHHHHHHHHHHhceeCCCCE
Confidence            2235444444 67899999999999996432                             14677799999999999999


Q ss_pred             EEEEec
Q 043411          208 MFLTFL  213 (242)
Q Consensus       208 lvl~~~  213 (242)
                      |+++++
T Consensus       130 ~i~~~~  135 (252)
T d1ri5a_         130 FIMTVP  135 (252)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            999865

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.2e-07  Score=80.56  Aligned_cols=58  Identities=12%  Similarity=0.040  Sum_probs=45.3

Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      +.+...-++++++|++.+++++||++.-+                             .++.++|+.-++-|||||+|++
T Consensus       146 ~~~~~~~~~~~~fD~V~~~~~l~~i~~~~-----------------------------~~~~~~l~~~~~~LkPGG~li~  196 (263)
T d2g72a1         146 QPLGAGSPAPLPADALVSAFCLEAVSPDL-----------------------------ASFQRALDHITTLLRPGGHLLL  196 (263)
T ss_dssp             STTCSSCSSCSSEEEEEEESCHHHHCSSH-----------------------------HHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CccccCCcCcCccCeeeeHHHHHHHccCH-----------------------------HHHHHHHHHHHHHcCCCCEEEE
Confidence            34444556778999999999999975422                             3566799999999999999999


Q ss_pred             EecccCC
Q 043411          211 TFLGRSI  217 (242)
Q Consensus       211 ~~~g~~~  217 (242)
                      ....+.+
T Consensus       197 ~~~~~~~  203 (263)
T d2g72a1         197 IGALEES  203 (263)
T ss_dssp             EEEESCC
T ss_pred             ecccCCc
Confidence            8876543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.49  E-value=8.6e-08  Score=79.22  Aligned_cols=100  Identities=17%  Similarity=0.122  Sum_probs=61.2

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|..+..+.+        +    +     ..|+--|+.. +.-...+      ...   . .++-  .+-
T Consensus        21 ~~~VLDiGcG~G~~~~~l~~--------~----g-----~~v~giD~s~-~~i~~a~------~~~---~-~~~~--~~~   70 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSRLQE--------H----F-----NDITCVEASE-EAISHAQ------GRL---K-DGIT--YIH   70 (225)
T ss_dssp             SSCEEEESCTTSHHHHHHTT--------T----C-----SCEEEEESCH-HHHHHHH------HHS---C-SCEE--EEE
T ss_pred             CCcEEEEeCCCcHHHHHHHH--------c----C-----CeEEEEeCcH-HHhhhhh------ccc---c-cccc--ccc
Confidence            46899999999999876541        1    1     2355555531 1111111      111   1 1211  233


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHH-hhhccCceEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRS-EEIVSGGRMF  209 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra-~EL~pGG~lv  209 (242)
                      +++ +.+.+++++|+|++..++||+++...                                 +|+.-. +=|+|||.++
T Consensus        71 ~~~-~~~~~~~~fD~I~~~~vleh~~d~~~---------------------------------~l~~i~~~~Lk~gG~l~  116 (225)
T d2p7ia1          71 SRF-EDAQLPRRYDNIVLTHVLEHIDDPVA---------------------------------LLKRINDDWLAEGGRLF  116 (225)
T ss_dssp             SCG-GGCCCSSCEEEEEEESCGGGCSSHHH---------------------------------HHHHHHHTTEEEEEEEE
T ss_pred             ccc-cccccccccccccccceeEecCCHHH---------------------------------HHHHHHHHhcCCCceEE
Confidence            455 45567899999999999999755222                                 554433 5689999999


Q ss_pred             EEecc
Q 043411          210 LTFLG  214 (242)
Q Consensus       210 l~~~g  214 (242)
                      +++.-
T Consensus       117 i~~pn  121 (225)
T d2p7ia1         117 LVCPN  121 (225)
T ss_dssp             EEEEC
T ss_pred             EEeCC
Confidence            99853

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.42  E-value=9.3e-07  Score=74.86  Aligned_cols=105  Identities=22%  Similarity=0.284  Sum_probs=75.1

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +..-+|+|+|||+|..++.+++        +       .|..+++.-|||.     ......           ..--+..
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~--------~-------~P~l~~~v~Dlp~-----vi~~~~-----------~~~ri~~  128 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIIS--------K-------YPLIKGINFDLPQ-----VIENAP-----------PLSGIEH  128 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECHH-----HHTTCC-----------CCTTEEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHH--------H-------CCCCeEEEecchh-----hhhccC-----------CCCCeEE
Confidence            4568999999999998877762        2       1678888899982     111111           1223456


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      ++|+|++.+ |..  |+++.++.||..++                               ++-.+.|+.-++-|+|||++
T Consensus       129 ~~gd~~~~~-p~~--D~~~l~~vLh~~~d-------------------------------e~~~~iL~~~~~aL~pgg~l  174 (244)
T d1fp1d2         129 VGGDMFASV-PQG--DAMILKAVCHNWSD-------------------------------EKCIEFLSNCHKALSPNGKV  174 (244)
T ss_dssp             EECCTTTCC-CCE--EEEEEESSGGGSCH-------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred             ecCCccccc-ccc--eEEEEehhhhhCCH-------------------------------HHHHHHHHHHHHHcCCCcEE
Confidence            889998763 543  99999999995332                               23445899999999999999


Q ss_pred             EEEecccCCC
Q 043411          209 FLTFLGRSIA  218 (242)
Q Consensus       209 vl~~~g~~~~  218 (242)
                      ++.-.-.++.
T Consensus       175 lI~e~v~~~~  184 (244)
T d1fp1d2         175 IIVEFILPEE  184 (244)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEecCC
Confidence            9998876554

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.41  E-value=2.3e-07  Score=76.70  Aligned_cols=115  Identities=16%  Similarity=0.193  Sum_probs=70.3

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ...|+|+|||+|..++.+..        +       .|+..++--|+-.+=.....+       .....+..++.+....
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~--------~-------~p~~~~iGiD~~~~~i~~a~~-------~~~~~~l~Nv~~~~~D   87 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAK--------Q-------NPDINYIGIELFKSVIVTAVQ-------KVKDSEAQNVKLLNID   87 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHH--------H-------CTTSEEEEECSCHHHHHHHHH-------HHHHSCCSSEEEECCC
T ss_pred             CceEEEEEecCcHHHHHHHH--------h-------CCCCcEEEeecchHHHHHHHH-------HHHHHhccCchhcccc
Confidence            34799999999999887752        1       257888888886322211111       1112233455443332


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      .......+|++++|.++..+...|..+.=.     |.++.             .       ..||+.-++=|+|||.|.+
T Consensus        88 a~~l~~~~~~~~~d~v~i~fp~P~~k~~h~-----k~Rl~-------------~-------~~~l~~~~r~LkpgG~l~i  142 (204)
T d2fcaa1          88 ADTLTDVFEPGEVKRVYLNFSDPWPKKRHE-----KRRLT-------------Y-------SHFLKKYEEVMGKGGSIHF  142 (204)
T ss_dssp             GGGHHHHCCTTSCCEEEEESCCCCCSGGGG-----GGSTT-------------S-------HHHHHHHHHHHTTSCEEEE
T ss_pred             hhhhhcccCchhhhccccccccccchhhhc-----chhhh-------------H-------HHHHHHHHHhCCCCcEEEE
Confidence            222235689999999999999999443100     11110             0       1277777777899999998


Q ss_pred             Ee
Q 043411          211 TF  212 (242)
Q Consensus       211 ~~  212 (242)
                      .+
T Consensus       143 ~T  144 (204)
T d2fcaa1         143 KT  144 (204)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.26  E-value=5.8e-07  Score=74.22  Aligned_cols=115  Identities=15%  Similarity=0.184  Sum_probs=71.0

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      ...|+|+|||+|.+++.+.+.               .|+..++--|+-.+=.....+       .....+..++.+....
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~---------------~p~~~~iGid~~~~~v~~a~~-------~~~~~~l~Ni~~~~~d   89 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQ---------------NPDINYIGIDIQKSVLSYALD-------KVLEVGVPNIKLLWVD   89 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH---------------CTTSEEEEEESCHHHHHHHHH-------HHHHHCCSSEEEEECC
T ss_pred             CCeEEEEeccCCHHHHHHHHH---------------CCCCceEEEeccHHHHHHHHH-------hhhhhccccceeeecC
Confidence            347999999999998877522               256788888876321221111       1111233455544433


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl  210 (242)
                      ..-....+|++++|.++..+.-.|-.+.=.     |.++.                    -..||+.-++-|+|||.|.+
T Consensus        90 a~~l~~~~~~~~~~~i~i~fPdPw~K~~h~-----krRl~--------------------~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1          90 GSDLTDYFEDGEIDRLYLNFSDPWPKKRHE-----KRRLT--------------------YKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             SSCGGGTSCTTCCSEEEEESCCCCCSGGGG-----GGSTT--------------------SHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHhhhccCCceehhcccccccccchhhh-----hhhhh--------------------HHHHHHHHHHhCCCCcEEEE
Confidence            333356789999999999888888332100     11110                    01288888888999999988


Q ss_pred             Ee
Q 043411          211 TF  212 (242)
Q Consensus       211 ~~  212 (242)
                      .+
T Consensus       145 ~T  146 (204)
T d1yzha1         145 KT  146 (204)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.5e-06  Score=69.44  Aligned_cols=136  Identities=10%  Similarity=0.020  Sum_probs=75.9

Q ss_pred             HHHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchh
Q 043411           33 WPFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDF  112 (242)
Q Consensus        33 ~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~  112 (242)
                      .|.|.+.+.+...  .+...||+|+|||+|.++..+.+        +         -.+|+--|+...=-...++.....
T Consensus        30 ~~~l~~~~~~~l~--~~~~~rvLd~GCG~G~~a~~LA~--------~---------G~~V~gvD~S~~ai~~a~~~~~~~   90 (229)
T d2bzga1          30 HQLLKKHLDTFLK--GKSGLRVFFPLCGKAVEMKWFAD--------R---------GHSVVGVEISELGIQEFFTEQNLS   90 (229)
T ss_dssp             CHHHHHHHHHHHT--TCCSCEEEETTCTTCTHHHHHHH--------T---------TCEEEEECSCHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHHh--------C---------CCcEEEEeCCHHHHHHHHHHhhcc
Confidence            3555555544332  23467999999999999998862        1         155666666531111111111100


Q ss_pred             H--HhhhhcC------CCCceeeccccccccc-cCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHH
Q 043411          113 Y--ERIKKDK------FGPCFIAGMLGSFYQR-LFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAF  183 (242)
Q Consensus       113 ~--~~l~~~~------~~~~f~~~vpgSFy~~-l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay  183 (242)
                      .  .......      ....-+..+-++++.. ..+.+++|++++..++|.+..  .                       
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~--~-----------------------  145 (229)
T d2bzga1          91 YSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINP--G-----------------------  145 (229)
T ss_dssp             EEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCG--G-----------------------
T ss_pred             ccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccc--h-----------------------
Confidence            0  0000000      0001111223355443 457789999999999998642  1                       


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCceEEEEecccCCC
Q 043411          184 WEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRSIA  218 (242)
Q Consensus       184 ~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~  218 (242)
                            +...+++.-++-|+|||++++..+..+..
T Consensus       146 ------~r~~~~~~~~~~LkpgG~~~l~~~~~~~~  174 (229)
T d2bzga1         146 ------DRKCYADTMFSLLGKKFQYLLCVLSYDPT  174 (229)
T ss_dssp             ------GHHHHHHHHHHTEEEEEEEEEEEEECCTT
T ss_pred             ------hhHHHHHHHHhhcCCcceEEEEEcccCCC
Confidence                  22336667778889999999999877543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.22  E-value=4.9e-06  Score=69.65  Aligned_cols=111  Identities=13%  Similarity=-0.003  Sum_probs=62.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      +-.+|+|+|||+|..+..+.+..               |.-+||--|+.. ..-..++.+.       ....+-..+.+-
T Consensus        74 pG~~VLDlGcGsG~~~~~la~~~---------------~~g~V~aVDiS~-~~i~~a~~~a-------~~~~ni~~i~~d  130 (230)
T d1g8sa_          74 RDSKILYLGASAGTTPSHVADIA---------------DKGIVYAIEYAP-RIMRELLDAC-------AERENIIPILGD  130 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHT---------------TTSEEEEEESCH-HHHHHHHHHT-------TTCTTEEEEECC
T ss_pred             CCCEEEEeCEEcCHHHHHHHHhC---------------CCCEEEEEeCcH-HHHHHHHHHH-------hhhcccceEEEe
Confidence            46899999999999888776321               235666666641 1111111111       011122333332


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      ....  ...++...|+.++...+||..+                                 ...+++.-.+-|+|||.++
T Consensus       131 ~~~~--~~~~~~~~~v~~i~~~~~~~~~---------------------------------~~~~l~~~~r~LKpgG~~~  175 (230)
T d1g8sa_         131 ANKP--QEYANIVEKVDVIYEDVAQPNQ---------------------------------AEILIKNAKWFLKKGGYGM  175 (230)
T ss_dssp             TTCG--GGGTTTCCCEEEEEECCCSTTH---------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred             eccC--cccccccceeEEeeccccchHH---------------------------------HHHHHHHHHHhcccCceEE
Confidence            2222  2234556666666666666322                                 1225666666779999999


Q ss_pred             EEecccCCC
Q 043411          210 LTFLGRSIA  218 (242)
Q Consensus       210 l~~~g~~~~  218 (242)
                      ++...+..+
T Consensus       176 i~~k~~~~d  184 (230)
T d1g8sa_         176 IAIKARSID  184 (230)
T ss_dssp             EEEEGGGTC
T ss_pred             EEeeccccC
Confidence            998877654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.12  E-value=1.9e-06  Score=69.58  Aligned_cols=106  Identities=16%  Similarity=0.195  Sum_probs=62.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      +.-+|+|+|||+|..++.+.+        .       .+  +|+.-|+-     .-.-.+.  +......+..+.-+..+
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~--------~-------~~--~v~~iD~s-----~~~i~~a--~~n~~~~~l~~~~i~~~  107 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALAD--------E-------VK--STTMADIN-----RRAIKLA--KENIKLNNLDNYDIRVV  107 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGG--------G-------SS--EEEEEESC-----HHHHHHH--HHHHHHTTCTTSCEEEE
T ss_pred             CCCeEEEEeecCChhHHHHHh--------h-------cc--ccceeeec-----cccchhH--HHHHHHhCCccceEEEE
Confidence            467999999999988876541        1       12  44555553     1111111  11111112223223345


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .+++++ -++++++|+|+|...+|+..                                ..+..||+.-.+-|+|||+|+
T Consensus       108 ~~d~~~-~~~~~~fD~Ii~~~p~~~~~--------------------------------~~~~~~l~~~~~~LkpgG~l~  154 (194)
T d1dusa_         108 HSDLYE-NVKDRKYNKIITNPPIRAGK--------------------------------EVLHRIIEEGKELLKDNGEIW  154 (194)
T ss_dssp             ECSTTT-TCTTSCEEEEEECCCSTTCH--------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred             Ecchhh-hhccCCceEEEEcccEEecc--------------------------------hhhhhHHHHHHHhcCcCcEEE
Confidence            567766 56789999999965554411                                123347777777889999998


Q ss_pred             EEe
Q 043411          210 LTF  212 (242)
Q Consensus       210 l~~  212 (242)
                      +..
T Consensus       155 i~~  157 (194)
T d1dusa_         155 VVI  157 (194)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.12  E-value=2.8e-06  Score=72.46  Aligned_cols=113  Identities=15%  Similarity=0.207  Sum_probs=66.2

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCc--eeec
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPC--FIAG  128 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~--f~~~  128 (242)
                      .-+|+|+|||+|..|+.+.+        +         -.+|+--|+.. .+-.+-+.      ..........  -...
T Consensus        57 ~~~vLD~GcG~G~~~~~la~--------~---------g~~v~gvD~S~-~ml~~A~~------~~~~~~~~~~~~~~~~  112 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVE--------E---------GFSVTSVDASD-KMLKYALK------ERWNRRKEPAFDKWVI  112 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHH--------T---------TCEEEEEESCH-HHHHHHHH------HHHHTTTSHHHHTCEE
T ss_pred             CCEEEEecCCCcHHHHHHHH--------c---------CCeeeeccCch-HHHHHHHH------HHHhcccccccceeee
Confidence            46899999999999887751        1         14667666652 11111110      0000000000  0011


Q ss_pred             cccccc---cccCCCCceeEEEcc-cceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043411          129 MLGSFY---QRLFPSRGINFIHSS-YSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVS  204 (242)
Q Consensus       129 vpgSFy---~~l~p~~svdl~~Ss-~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~p  204 (242)
                      ...+|.   ..+.+.+++|++++. .+++++...-..                          ..|...+|+.-++-|+|
T Consensus       113 ~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~--------------------------~~~~~~~l~~~~~~Lkp  166 (292)
T d1xvaa_         113 EEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGD--------------------------QSEHRLALKNIASMVRP  166 (292)
T ss_dssp             EECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSS--------------------------SHHHHHHHHHHHHTEEE
T ss_pred             eeccccccccccCCCCCceEEEEecCchhhcCCcccC--------------------------hHHHHHHHHHHHHHcCc
Confidence            222342   345567889999875 477775442221                          14677799999999999


Q ss_pred             CceEEEEec
Q 043411          205 GGRMFLTFL  213 (242)
Q Consensus       205 GG~lvl~~~  213 (242)
                      ||+|++.+.
T Consensus       167 gG~li~~~~  175 (292)
T d1xvaa_         167 GGLLVIDHR  175 (292)
T ss_dssp             EEEEEEEEE
T ss_pred             CcEEEEeec
Confidence            999999875

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=2.4e-06  Score=74.57  Aligned_cols=104  Identities=21%  Similarity=0.273  Sum_probs=64.5

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|..|+.++        +.    |    .-+|+.-|..  ......+...      ..... .--+..+-
T Consensus        39 ~~~VLDlGcGtG~ls~~aa--------~~----G----a~~V~avd~s--~~~~~a~~~~------~~~~~-~~~i~~i~   93 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAA--------KH----G----AKHVIGVDMS--SIIEMAKELV------ELNGF-SDKITLLR   93 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHH--------HT----C----CSEEEEEESS--THHHHHHHHH------HHTTC-TTTEEEEE
T ss_pred             cCEEEEeCCCCCHHHHHHH--------Hh----C----CCEEEEEeCC--HHHHHHHHHH------HHhCc-cccceEEE
Confidence            4689999999999887664        11    1    1367777764  2222222111      11111 11122344


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      ++..+--+|++++|+++|....+.+....                              ++..++.+|.+-|+|||+++
T Consensus        94 ~~~~~l~~~~~~~D~i~se~~~~~~~~e~------------------------------~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_          94 GKLEDVHLPFPKVDIIISEWMGYFLLYES------------------------------MMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SCTTTSCCSSSCEEEEEECCCBTTBSTTC------------------------------CHHHHHHHHHHHEEEEEEEE
T ss_pred             eehhhccCcccceeEEEEEecceeeccch------------------------------hHHHHHHHHHhccCCCeEEE
Confidence            57766667999999999977776644422                              23347888889999999985

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.09  E-value=1.2e-05  Score=68.91  Aligned_cols=109  Identities=14%  Similarity=0.130  Sum_probs=66.4

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~  128 (242)
                      .--+|+|+|||.|..++.+.+..               . .+|+--|+..+...- .      +......+. ..+.  .
T Consensus        52 ~g~~VLDiGCG~G~~a~~~a~~~---------------g-~~v~gi~ls~~q~~~-a------~~~~~~~~l~~~~~--~  106 (280)
T d2fk8a1          52 PGMTLLDIGCGWGTTMRRAVERF---------------D-VNVIGLTLSKNQHAR-C------EQVLASIDTNRSRQ--V  106 (280)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH---------------C-CEEEEEESCHHHHHH-H------HHHHHTSCCSSCEE--E
T ss_pred             CCCEEEEecCCchHHHHHHHHhC---------------c-eeEEEecchHHHHHH-H------HHHHHhhccccchh--h
Confidence            46899999999998877654222               2 466666666322111 1      111111111 1121  1


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      .-.++ .  .+++++|.|+|..+++.+.+                               ++|..||+.-++-|+|||++
T Consensus       107 ~~~d~-~--~~~~~fD~i~si~~~eh~~~-------------------------------~~~~~~f~~i~~~LkpgG~~  152 (280)
T d2fk8a1         107 LLQGW-E--DFAEPVDRIVSIEAFEHFGH-------------------------------ENYDDFFKRCFNIMPADGRM  152 (280)
T ss_dssp             EESCG-G--GCCCCCSEEEEESCGGGTCG-------------------------------GGHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhh-h--hhccchhhhhHhhHHHHhhh-------------------------------hhHHHHHHHHHhccCCCceE
Confidence            11232 2  34688999999888776432                               34556999999999999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++..++..+
T Consensus       153 ~i~~i~~~~  161 (280)
T d2fk8a1         153 TVQSSVSYH  161 (280)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEeeccC
Confidence            998766543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.03  E-value=1.1e-05  Score=69.89  Aligned_cols=104  Identities=15%  Similarity=0.175  Sum_probs=64.7

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      .-+|+|+|||+|..|+.+++        .    |   + -+|+--|...  -....+...      ..++... -+..+.
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~--------~----G---a-~~V~avd~s~--~~~~a~~~~------~~n~~~~-~v~~~~   88 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAK--------A----G---A-RKVIGIECSS--ISDYAVKIV------KANKLDH-VVTIIK   88 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHH--------T----T---C-SEEEEEECST--THHHHHHHH------HHTTCTT-TEEEEE
T ss_pred             cCEEEEEecCCcHHHHHHHH--------h----C---C-CEEEEEcCcH--HHhhhhhHH------HHhCCcc-ccceEe
Confidence            35799999999998876651        1    1   2 4677778642  122211111      1111111 123345


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      ++..+--+|.+++|+++|....+.+-.-                              .++..++.+|.+-|+|||+++
T Consensus        89 ~~~~~~~~~~~~~D~ivs~~~~~~l~~e------------------------------~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          89 GKVEEVELPVEKVDIIISEWMGYCLFYE------------------------------SMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             SCTTTCCCSSSCEEEEEECCCBBTBTBT------------------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccHHHcccccceeEEEeeeeeeeeeccH------------------------------HHHHHHHHHHHhcCCCCeEEE
Confidence            6776767889999999997666664331                              123448999999999999986

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.95  E-value=3.2e-05  Score=66.79  Aligned_cols=118  Identities=14%  Similarity=0.100  Sum_probs=68.5

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ..--+|+|+|||.|..++.+++..               + .+|.--|+..+-..- -      +......+ -...+..
T Consensus        60 ~~G~~VLDiGCG~G~~~~~~a~~~---------------g-~~v~git~s~~q~~~-a------~~~~~~~~-l~~~v~~  115 (291)
T d1kpia_          60 EPGMTLLDIGCGWGSTMRHAVAEY---------------D-VNVIGLTLSENQYAH-D------KAMFDEVD-SPRRKEV  115 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH---------------C-CEEEEEESCHHHHHH-H------HHHHHHSC-CSSCEEE
T ss_pred             CCCCEEEEecCcchHHHHHHHHhc---------------C-cceeeccchHHHHHH-H------HHHHHhhc-cchhhhh
Confidence            346899999999999877665222               1 455555555211100 0      00111100 0111111


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      .-.++   -++++++|.|+|--++..+.+.....                        ..+.|.+|++.-++=|+|||+|
T Consensus       116 ~~~d~---~~~~~~fD~i~sie~~eH~~~~~~~~------------------------~~~~~~~~f~~i~~~LkpgG~~  168 (291)
T d1kpia_         116 RIQGW---EEFDEPVDRIVSLGAFEHFADGAGDA------------------------GFERYDTFFKKFYNLTPDDGRM  168 (291)
T ss_dssp             EECCG---GGCCCCCSEEEEESCGGGTTCCSSCC------------------------STTHHHHHHHHHHHTSCTTCEE
T ss_pred             hhhcc---cccccccceEeechhHHhcchhhhhh------------------------HHHHHHHHHHHHHHhCCCCCce
Confidence            11232   36788999999988875543322110                        0135666999999999999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++..++..+
T Consensus       169 ~l~~i~~~~  177 (291)
T d1kpia_         169 LLHTITIPD  177 (291)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEeccC
Confidence            999988644

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.95  E-value=2.9e-05  Score=65.29  Aligned_cols=104  Identities=16%  Similarity=0.338  Sum_probs=72.0

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ...-+|+|+|||+|..++.++        ++       .|..+++.-|||.     +....+.           .--+..
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~--------~~-------~P~l~~~v~Dlp~-----vi~~~~~-----------~~rv~~  127 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIIC--------ET-------FPKLKCIVFDRPQ-----VVENLSG-----------SNNLTY  127 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHH--------HH-------CTTCEEEEEECHH-----HHTTCCC-----------BTTEEE
T ss_pred             cCceEEEEecCCccHHHHHHH--------Hh-------CCCCeEEEecCHH-----HHHhCcc-----------cCceEE
Confidence            345789999999998877665        22       2578999999982     2222211           122456


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC---
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG---  205 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG---  205 (242)
                      ++|+|++.. |  .-|+++..+.||-.++                               ++-.++|+..++.|+||   
T Consensus       128 ~~gD~f~~~-p--~aD~~~l~~vLHdw~d-------------------------------~~~~~iL~~~~~al~pgg~~  173 (244)
T d1fp2a2         128 VGGDMFTSI-P--NADAVLLKYILHNWTD-------------------------------KDCLRILKKCKEAVTNDGKR  173 (244)
T ss_dssp             EECCTTTCC-C--CCSEEEEESCGGGSCH-------------------------------HHHHHHHHHHHHHHSGGGCC
T ss_pred             EecCcccCC-C--CCcEEEEEeecccCCh-------------------------------HHHHHHHHHHHHHcCcccCC
Confidence            889998753 4  4599999999994332                               34455999999999999   


Q ss_pred             ceEEEEecccCC
Q 043411          206 GRMFLTFLGRSI  217 (242)
Q Consensus       206 G~lvl~~~g~~~  217 (242)
                      |++++.-.-.++
T Consensus       174 ~~lli~e~~~~~  185 (244)
T d1fp2a2         174 GKVTIIDMVIDK  185 (244)
T ss_dssp             CEEEEEECEECT
T ss_pred             cEEEEEEeecCC
Confidence            677776655443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2e-05  Score=67.90  Aligned_cols=119  Identities=14%  Similarity=0.139  Sum_probs=68.2

Q ss_pred             HHHHHHHHhhhccCCCCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhH
Q 043411           34 PFLEETIKDMFSSSFPGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFY  113 (242)
Q Consensus        34 ~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~  113 (242)
                      ...++||.+....  -+.-+|+|+|||+|..++.+++        .    |   + -+|+--|...  .-...+..    
T Consensus        21 ~~y~~ai~~~~~~--~~~~~VLDiGcG~G~lsl~aa~--------~----G---a-~~V~aid~s~--~~~~a~~~----   76 (311)
T d2fyta1          21 ESYRDFIYQNPHI--FKDKVVLDVGCGTGILSMFAAK--------A----G---A-KKVLGVDQSE--ILYQAMDI----   76 (311)
T ss_dssp             HHHHHHHHHCGGG--TTTCEEEEETCTTSHHHHHHHH--------T----T---C-SEEEEEESST--HHHHHHHH----
T ss_pred             HHHHHHHHhcccc--CCcCEEEEECCCCCHHHHHHHH--------c----C---C-CEEEEEeCHH--HHHHHHHH----
Confidence            3445555432211  1346899999999998876652        1    1   2 4778778652  11111111    


Q ss_pred             Hhhhhc-CCCCceeeccccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHH
Q 043411          114 ERIKKD-KFGPCFIAGMLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFS  192 (242)
Q Consensus       114 ~~l~~~-~~~~~f~~~vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~  192 (242)
                        .... ....+  ..+.++..+--+|++++|+++|-...|-+..        +                      ..+.
T Consensus        77 --~~~~~~~~~i--~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~--------e----------------------~~~~  122 (311)
T d2fyta1          77 --IRLNKLEDTI--TLIKGKIEEVHLPVEKVDVIISEWMGYFLLF--------E----------------------SMLD  122 (311)
T ss_dssp             --HHHTTCTTTE--EEEESCTTTSCCSCSCEEEEEECCCBTTBTT--------T----------------------CHHH
T ss_pred             --HHHhCCCccc--eEEEeeHHHhcCccccceEEEEeeeeeeccc--------c----------------------cccH
Confidence              1111 11122  2345666555578899999999554443221        0                      1234


Q ss_pred             HHHHHHHhhhccCceEEE
Q 043411          193 AFLSLRSEEIVSGGRMFL  210 (242)
Q Consensus       193 ~FL~~Ra~EL~pGG~lvl  210 (242)
                      .++.+|.+-|+|||+++-
T Consensus       123 ~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         123 SVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             HHHHHHHHHEEEEEEEES
T ss_pred             HHHHHHHhcCCCCcEEec
Confidence            488888899999999973

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.90  E-value=1.7e-05  Score=65.19  Aligned_cols=83  Identities=12%  Similarity=0.108  Sum_probs=49.4

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      .+..+|+|+|||+|..|..+.+.+           +   +...|+--|.-. +.-..-      +..+......++-+  
T Consensus        74 ~~g~~VLdiG~GtG~~s~~la~~~-----------~---~~g~V~~id~~~-~~~~~a------~~~~~~~~~~n~~~--  130 (213)
T d1dl5a1          74 DKGMRVLEIGGGTGYNAAVMSRVV-----------G---EKGLVVSVEYSR-KICEIA------KRNVERLGIENVIF--  130 (213)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHH-----------C---TTCEEEEEESCH-HHHHHH------HHHHHHTTCCSEEE--
T ss_pred             cccceEEEecCccchhHHHHHHHh-----------C---CCCcEEEeecch-hhHHHh------hhhHhhhccccccc--
Confidence            346799999999999998775333           1   235666666541 111111      11122212223222  


Q ss_pred             cccccccccCCCCceeEEEcccceee
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHW  154 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhW  154 (242)
                      +-++..+-+++.+++|.|++..++++
T Consensus       131 ~~~d~~~~~~~~~~fD~I~~~~~~~~  156 (213)
T d1dl5a1         131 VCGDGYYGVPEFSPYDVIFVTVGVDE  156 (213)
T ss_dssp             EESCGGGCCGGGCCEEEEEECSBBSC
T ss_pred             ccCchHHccccccchhhhhhhccHHH
Confidence            33566666777889999999998876

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.88  E-value=7.9e-05  Score=62.21  Aligned_cols=102  Identities=19%  Similarity=0.280  Sum_probs=68.0

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ..-+|+|+|||+|..++.+++        +       .|..+++.-|||.-        ++..        ...--+..+
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~--------~-------~P~l~~~v~Dlp~v--------i~~~--------~~~~r~~~~  129 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVS--------K-------YPTIKGINFDLPHV--------IEDA--------PSYPGVEHV  129 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHH--------H-------CTTSEEEEEECTTT--------TTTC--------CCCTTEEEE
T ss_pred             CCcEEEEecCCCcHHHHHHHH--------H-------CCCCeEEEcccHHh--------hhhc--------ccCCceEEe
Confidence            457899999999998887762        2       15688899999941        1110        012234468


Q ss_pred             ccccccccCCCCceeEEEccccee-ecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVH-WLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alh-WLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +++|++. .|...  +.+-.+.+| |    |.                            +|...+|+.-++-|+|||++
T Consensus       130 ~~d~~~~-~P~ad--~~~l~~vlh~~----~d----------------------------~~~~~iL~~~~~al~pgg~~  174 (243)
T d1kyza2         130 GGDMFVS-IPKAD--AVFMKWICHDW----SD----------------------------EHCLKFLKNCYEALPDNGKV  174 (243)
T ss_dssp             ECCTTTC-CCCCS--CEECSSSSTTS----CH----------------------------HHHHHHHHHHHHHCCSSSCE
T ss_pred             ccccccc-CCCcc--eEEEEEEeecC----CH----------------------------HHHHHHHHHHHHhcCCCceE
Confidence            8899876 46553  333344444 4    11                            35566899999999999999


Q ss_pred             EEEecccCC
Q 043411          209 FLTFLGRSI  217 (242)
Q Consensus       209 vl~~~g~~~  217 (242)
                      ++.-.-..+
T Consensus       175 li~d~~~~~  183 (243)
T d1kyza2         175 IVAECILPV  183 (243)
T ss_dssp             EEEECEECS
T ss_pred             EEEEEEecC
Confidence            998665443

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.88  E-value=5.6e-05  Score=61.96  Aligned_cols=25  Identities=16%  Similarity=0.135  Sum_probs=20.0

Q ss_pred             HHHHHHhhhccCceEEEEecccCCC
Q 043411          194 FLSLRSEEIVSGGRMFLTFLGRSIA  218 (242)
Q Consensus       194 FL~~Ra~EL~pGG~lvl~~~g~~~~  218 (242)
                      ||+.-.+=|+|||++++...++..+
T Consensus       142 ~l~~~~~~LkpgG~l~i~~~~~~~d  166 (209)
T d1nt2a_         142 LKANAEFFLKEKGEVVIMVKARSID  166 (209)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEHHHHC
T ss_pred             HHHHHHHHhccCCeEEEEEEccccC
Confidence            6777777789999999998776544

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=2.2e-05  Score=66.63  Aligned_cols=101  Identities=24%  Similarity=0.268  Sum_probs=56.7

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      +.-+|+|+|||+|..++.+.        +.    +     .+|+--|.-. +.-...+      .....+.....|..  
T Consensus       120 ~g~~VLDiGcGsG~l~i~aa--------~~----g-----~~V~gvDis~-~av~~A~------~na~~n~~~~~~~~--  173 (254)
T d2nxca1         120 PGDKVLDLGTGSGVLAIAAE--------KL----G-----GKALGVDIDP-MVLPQAE------ANAKRNGVRPRFLE--  173 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHH--------HT----T-----CEEEEEESCG-GGHHHHH------HHHHHTTCCCEEEE--
T ss_pred             ccCEEEEcccchhHHHHHHH--------hc----C-----CEEEEEECCh-HHHHHHH------HHHHHcCCceeEEe--
Confidence            34799999999998887543        11    1     3566677652 1111111      11111222233433  


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                       ++. ...+|.+++|++++....+                                    .+..++..-.+-|+|||+|+
T Consensus       174 -~d~-~~~~~~~~fD~V~ani~~~------------------------------------~l~~l~~~~~~~LkpGG~li  215 (254)
T d2nxca1         174 -GSL-EAALPFGPFDLLVANLYAE------------------------------------LHAALAPRYREALVPGGRAL  215 (254)
T ss_dssp             -SCH-HHHGGGCCEEEEEEECCHH------------------------------------HHHHHHHHHHHHEEEEEEEE
T ss_pred             -ccc-cccccccccchhhhccccc------------------------------------cHHHHHHHHHHhcCCCcEEE
Confidence             344 3457888999999842211                                    11224444456689999999


Q ss_pred             EEecc
Q 043411          210 LTFLG  214 (242)
Q Consensus       210 l~~~g  214 (242)
                      ++-+-
T Consensus       216 lSgil  220 (254)
T d2nxca1         216 LTGIL  220 (254)
T ss_dssp             EEEEE
T ss_pred             EEecc
Confidence            97543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.9e-05  Score=65.08  Aligned_cols=23  Identities=13%  Similarity=0.122  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHhhhccCceEEEEe
Q 043411          190 DFSAFLSLRSEEIVSGGRMFLTF  212 (242)
Q Consensus       190 D~~~FL~~Ra~EL~pGG~lvl~~  212 (242)
                      |...||+.-.+-|+|||+|++..
T Consensus       141 ~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         141 QFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             HHHHHHHTHHHHEEEEEEEEECC
T ss_pred             CHHHHHHHHHHHcCCCcEEEEEe
Confidence            45558888888899999998743

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.76  E-value=0.00013  Score=60.57  Aligned_cols=112  Identities=15%  Similarity=0.070  Sum_probs=63.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCC-ceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGP-CFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~-~f~~~  128 (242)
                      .-.+|+|+|||+|..|..+.+.+ .             |.-.||--|.-. .+-...+.      ..  ...++ ..+.+
T Consensus        73 pG~~VLDlGaGsG~~t~~la~~V-G-------------~~G~V~aVD~s~-~~l~~a~~------~a--~~~~~~~~i~~  129 (227)
T d1g8aa_          73 PGKSVLYLGIASGTTASHVSDIV-G-------------WEGKIFGIEFSP-RVLRELVP------IV--EERRNIVPILG  129 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHH-C-------------TTSEEEEEESCH-HHHHHHHH------HH--SSCTTEEEEEC
T ss_pred             CCCEEEEeccCCCHHHHHHHHHh-C-------------CCCEEEEEeCcH-HHHHHHHH------HH--HhcCCceEEEE
Confidence            35899999999999999886433 2             346677666652 11111111      11  11122 23333


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      ..+.-..-..+..++|+++..        +|..               +            +-..+++.-.+-|+|||++
T Consensus       130 d~~~~~~~~~~~~~vD~i~~d--------~~~~---------------~------------~~~~~l~~~~~~LkpgG~l  174 (227)
T d1g8aa_         130 DATKPEEYRALVPKVDVIFED--------VAQP---------------T------------QAKILIDNAEVYLKRGGYG  174 (227)
T ss_dssp             CTTCGGGGTTTCCCEEEEEEC--------CCST---------------T------------HHHHHHHHHHHHEEEEEEE
T ss_pred             ECCCcccccccccceEEEEEE--------cccc---------------c------------hHHHHHHHHHHhcccCCeE
Confidence            333333333455689988762        1210               0            1112666667778999999


Q ss_pred             EEEecccCCCC
Q 043411          209 FLTFLGRSIAD  219 (242)
Q Consensus       209 vl~~~g~~~~~  219 (242)
                      ++++.++....
T Consensus       175 vi~~ka~~~~~  185 (227)
T d1g8aa_         175 MIAVKSRSIDV  185 (227)
T ss_dssp             EEEEEGGGTCT
T ss_pred             EEEEECCccCC
Confidence            99988876543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.73  E-value=8.8e-05  Score=63.72  Aligned_cols=46  Identities=20%  Similarity=0.269  Sum_probs=35.9

Q ss_pred             CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecccC
Q 043411          140 SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLTFLGRS  216 (242)
Q Consensus       140 ~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~  216 (242)
                      +++.|-++|..++..+.+                               +.+..|++...+=|+|||++++..++..
T Consensus       125 ~~~fD~i~si~~~eh~~~-------------------------------~~~~~~~~~~~r~LkpgG~~~l~~i~~~  170 (285)
T d1kpga_         125 DEPVDRIVSIGAFEHFGH-------------------------------ERYDAFFSLAHRLLPADGVMLLHTITGL  170 (285)
T ss_dssp             CCCCSEEEEESCGGGTCT-------------------------------TTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             cccccceeeehhhhhcCc-------------------------------hhHHHHHHHHHhhcCCCCcEEEEEEecc
Confidence            578999999777766432                               2344589999999999999999988753

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.71  E-value=2.6e-05  Score=62.24  Aligned_cols=104  Identities=19%  Similarity=0.208  Sum_probs=61.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~  128 (242)
                      +--+|+|+|||+|..|+.+..        .         --+|+--|.-. +.-...+      +....... .++  ..
T Consensus        33 ~g~~VLDiGcGsG~~s~~lA~--------~---------~~~V~avD~~~-~~l~~a~------~n~~~~gl~~~v--~~   86 (186)
T d1l3ia_          33 KNDVAVDVGCGTGGVTLELAG--------R---------VRRVYAIDRNP-EAISTTE------MNLQRHGLGDNV--TL   86 (186)
T ss_dssp             TTCEEEEESCTTSHHHHHHHT--------T---------SSEEEEEESCH-HHHHHHH------HHHHHTTCCTTE--EE
T ss_pred             CCCEEEEEECCeEcccccccc--------c---------ceEEEEecCCH-HHHHHHH------HHHHHcCCCcce--EE
Confidence            467999999999999886641        1         12455555531 1111111      11111111 132  33


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      +.|++.+-+++..++|++++.-..                                    .++..+++.-.+-|+|||+|
T Consensus        87 ~~gda~~~~~~~~~~D~v~~~~~~------------------------------------~~~~~~~~~~~~~LkpgG~l  130 (186)
T d1l3ia_          87 MEGDAPEALCKIPDIDIAVVGGSG------------------------------------GELQEILRIIKDKLKPGGRI  130 (186)
T ss_dssp             EESCHHHHHTTSCCEEEEEESCCT------------------------------------TCHHHHHHHHHHTEEEEEEE
T ss_pred             EECchhhcccccCCcCEEEEeCcc------------------------------------ccchHHHHHHHHHhCcCCEE
Confidence            556887788888999999873210                                    01223677777779999999


Q ss_pred             EEEeccc
Q 043411          209 FLTFLGR  215 (242)
Q Consensus       209 vl~~~g~  215 (242)
                      ++.....
T Consensus       131 vi~~~~~  137 (186)
T d1l3ia_         131 IVTAILL  137 (186)
T ss_dssp             EEEECBH
T ss_pred             EEEeecc
Confidence            9876543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=4.4e-05  Score=63.25  Aligned_cols=87  Identities=11%  Similarity=-0.078  Sum_probs=47.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      +--+|+|+|||+|..|..+.+.+ .             +.-+|+--|.-. ++-...+..-. +..+....  ...+..+
T Consensus        76 ~g~~VLdiG~GsGy~ta~la~l~-~-------------~~g~V~~ie~~~-~l~~~a~~~l~-~~~~~~~~--~~~~~~~  137 (224)
T d1i1na_          76 EGAKALDVGSGSGILTACFARMV-G-------------CTGKVIGIDHIK-ELVDDSVNNVR-KDDPTLLS--SGRVQLV  137 (224)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-C-------------TTCEEEEEESCH-HHHHHHHHHHH-HHCTHHHH--TSSEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHHh-C-------------CCceEEEEcCCH-HHHHHHHHhcc-ccCccccc--ccceEEE
Confidence            35799999999999998765322 1             235666666542 22211111000 00000000  1112223


Q ss_pred             ccccccccCCCCceeEEEcccceee
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHW  154 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhW  154 (242)
                      -|+-+.-.++.+++|.|+...++++
T Consensus       138 ~gD~~~~~~~~~~fD~I~~~~~~~~  162 (224)
T d1i1na_         138 VGDGRMGYAEEAPYDAIHVGAAAPV  162 (224)
T ss_dssp             ESCGGGCCGGGCCEEEEEECSBBSS
T ss_pred             Eeecccccchhhhhhhhhhhcchhh
Confidence            4566666777889999999888765

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.69  E-value=7.2e-05  Score=63.80  Aligned_cols=107  Identities=16%  Similarity=0.145  Sum_probs=66.3

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      .-.+|+|+|||+|..|+.+...+           +   |.-+|+--|.-. |+-...+.  .... .......+  +..+
T Consensus        96 PG~~VLE~G~GsG~lt~~La~~v-----------g---p~G~V~~~d~~~-~~~~~Ar~--n~~~-~~~~~~~n--v~~~  155 (264)
T d1i9ga_          96 PGARVLEAGAGSGALTLSLLRAV-----------G---PAGQVISYEQRA-DHAEHARR--NVSG-CYGQPPDN--WRLV  155 (264)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH-----------C---TTSEEEEECSCH-HHHHHHHH--HHHH-HHTSCCTT--EEEE
T ss_pred             CCCEEEecCcCCcHHHHHHHHhh-----------C---CCcEEEEecCCH-HHHHHHHH--hhhh-hccCCCce--EEEE
Confidence            35899999999999999887544           1   345666555432 33333221  0111 10011112  2234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      -+++.+.-+|++++|.++.        ++|.+-.                              ++..-++-|||||+|+
T Consensus       156 ~~d~~~~~~~~~~fDaV~l--------dlp~P~~------------------------------~l~~~~~~LkpGG~lv  197 (264)
T d1i9ga_         156 VSDLADSELPDGSVDRAVL--------DMLAPWE------------------------------VLDAVSRLLVAGGVLM  197 (264)
T ss_dssp             CSCGGGCCCCTTCEEEEEE--------ESSCGGG------------------------------GHHHHHHHEEEEEEEE
T ss_pred             ecccccccccCCCcceEEE--------ecCCHHH------------------------------HHHHHHhccCCCCEEE
Confidence            4578777789999999974        4666321                              5777788899999998


Q ss_pred             EEecc
Q 043411          210 LTFLG  214 (242)
Q Consensus       210 l~~~g  214 (242)
                      +..+.
T Consensus       198 ~~~P~  202 (264)
T d1i9ga_         198 VYVAT  202 (264)
T ss_dssp             EEESS
T ss_pred             EEeCc
Confidence            86543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.64  E-value=9.6e-05  Score=62.45  Aligned_cols=103  Identities=6%  Similarity=0.071  Sum_probs=61.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      .-.+|+|+|||+|..|+.+.+.+ .             |.-.|+--|.-. +|-...+.      .+... ....-+...
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v-~-------------~~g~V~~vD~~e-~~~~~A~~------n~~~~-~~~~nv~~~  142 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYAL-N-------------GKGTLTVVERDE-DNLKKAMD------NLSEF-YDIGNVRTS  142 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH-T-------------TSSEEEEECSCH-HHHHHHHH------HHHTT-SCCTTEEEE
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHh-C-------------CCcEEEEEECCH-HHHHHHHH------HHHHh-cCCCceEEE
Confidence            35899999999999999887444 1             235566555431 22222211      11110 011112234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      -+++. ..+|++++|.++.        ++|.+-                              .+|..-++-|||||+|+
T Consensus       143 ~~Di~-~~~~~~~fD~V~l--------d~p~p~------------------------------~~l~~~~~~LKpGG~lv  183 (250)
T d1yb2a1         143 RSDIA-DFISDQMYDAVIA--------DIPDPW------------------------------NHVQKIASMMKPGSVAT  183 (250)
T ss_dssp             CSCTT-TCCCSCCEEEEEE--------CCSCGG------------------------------GSHHHHHHTEEEEEEEE
T ss_pred             Eeeee-cccccceeeeeee--------cCCchH------------------------------HHHHHHHHhcCCCceEE
Confidence            45774 4478899999985        344421                              15777778899999999


Q ss_pred             EEec
Q 043411          210 LTFL  213 (242)
Q Consensus       210 l~~~  213 (242)
                      +..+
T Consensus       184 ~~~P  187 (250)
T d1yb2a1         184 FYLP  187 (250)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            8654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00024  Score=61.78  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHhhhccCceEEEEe
Q 043411          190 DFSAFLSLRSEEIVSGGRMFLTF  212 (242)
Q Consensus       190 D~~~FL~~Ra~EL~pGG~lvl~~  212 (242)
                      |+...|....+.|||||+++++-
T Consensus       244 ~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         244 EVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEESS
T ss_pred             HHHHHHHHHHHhCCCCcEEEEec
Confidence            34447788889999999998753

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.00016  Score=61.90  Aligned_cols=127  Identities=17%  Similarity=0.245  Sum_probs=68.6

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      .++.+|+|+|||||.-++.+....               |..+|+..|... +--.+-+.      -....+..+  +..
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~---------------p~~~v~avDis~-~Al~~A~~------Na~~~~~~~--v~~  162 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASER---------------PDCEIIAVDRMP-DAVSLAQR------NAQHLAIKN--IHI  162 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHC---------------TTSEEEEECSSH-HHHHHHHH------HHHHHTCCS--EEE
T ss_pred             ccccceeeeehhhhHHHHHHHhhC---------------Ccceeeeccchh-HHHhHHHH------HHHHhCccc--cee
Confidence            356899999999999888765222               468899998862 11111111      011112223  234


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceE--EcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIY--ITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~--~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      +-+++++. ++.+.+|+|+|.         |+-+..+.-...  +..-.|..+.- --+-....++++++.=.+-|+|||
T Consensus       163 ~~~d~~~~-~~~~~fDlIvsN---------PPYi~~~~~~~~~~v~~~eP~~AL~-~g~dGl~~~~~i~~~a~~~L~~~G  231 (274)
T d2b3ta1         163 LQSDWFSA-LAGQQFAMIVSN---------PPYIDEQDPHLQQGDVRFEPLTALV-AADSGMADIVHIIEQSRNALVSGG  231 (274)
T ss_dssp             ECCSTTGG-GTTCCEEEEEEC---------CCCBCTTCHHHHSSGGGSSCSTTTB-CHHHHTHHHHHHHHHHGGGEEEEE
T ss_pred             eecccccc-cCCCceeEEEec---------chhhhhhhhcccccccccchhhhcc-cccccchHHHHHHHHHHHhcCCCC
Confidence            55688775 456799999994         433321100000  00000000000 011223445568888888899999


Q ss_pred             eEEE
Q 043411          207 RMFL  210 (242)
Q Consensus       207 ~lvl  210 (242)
                      .|++
T Consensus       232 ~l~l  235 (274)
T d2b3ta1         232 FLLL  235 (274)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.48  E-value=8.9e-05  Score=59.83  Aligned_cols=43  Identities=12%  Similarity=0.081  Sum_probs=33.2

Q ss_pred             CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEE
Q 043411          138 FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMFLT  211 (242)
Q Consensus       138 ~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~  211 (242)
                      .|.+.+|+|++-+.|+.++.                               ....+.|+.-++-|+|||+|+++
T Consensus       128 ~~~~~fDvI~CRNVLiYf~~-------------------------------~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         128 NVPGPFDAIFCRNVMIYFDK-------------------------------TTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             CCCCCEEEEEECSSGGGSCH-------------------------------HHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             CCCCCccEEEeehhHHhcCH-------------------------------HHHHHHHHHHHHHhCCCcEEEEe
Confidence            35678999999998887654                               12234788889999999999883

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=0.00012  Score=66.04  Aligned_cols=22  Identities=9%  Similarity=0.075  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHhhhccCceEEEE
Q 043411          190 DFSAFLSLRSEEIVSGGRMFLT  211 (242)
Q Consensus       190 D~~~FL~~Ra~EL~pGG~lvl~  211 (242)
                      |+...|....+.|||||+++.+
T Consensus       311 ~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         311 DLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEES
T ss_pred             HHHHHHHHHHHhcCCCcEEEEe
Confidence            4556888899999999999874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=96.93  E-value=0.00036  Score=57.79  Aligned_cols=21  Identities=24%  Similarity=0.272  Sum_probs=17.2

Q ss_pred             CCccEEeeecCCCCcchHHHH
Q 043411           49 PGCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~   69 (242)
                      .+.-+|+|+|||+|..|..+.
T Consensus        69 ~~g~~VLdIG~GsGy~ta~La   89 (224)
T d1vbfa_          69 HKGQKVLEIGTGIGYYTALIA   89 (224)
T ss_dssp             CTTCEEEEECCTTSHHHHHHH
T ss_pred             cccceEEEecCCCCHHHHHHH
Confidence            345799999999999987554

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.0019  Score=54.45  Aligned_cols=105  Identities=16%  Similarity=0.200  Sum_probs=59.4

Q ss_pred             CCccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeec
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~  128 (242)
                      ..-.+|+|+|||+|..|+.+...+           +   |.-+|+--|.-. ++-.+.+..      +..... .-.+..
T Consensus       102 ~pG~~VLDiG~GsG~lt~~lA~~~-----------~---~~G~V~~vD~~~-~~~~~A~~~------~~~~g~-~~~v~~  159 (266)
T d1o54a_         102 KEGDRIIDTGVGSGAMCAVLARAV-----------G---SSGKVFAYEKRE-EFAKLAESN------LTKWGL-IERVTI  159 (266)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHT-----------T---TTCEEEEECCCH-HHHHHHHHH------HHHTTC-GGGEEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHh-----------C---CCcEEEEEeCCH-HHHHHHHHH------HHHhcc-ccCcEE
Confidence            346899999999999999876333           1   235566555542 333332221      111010 111222


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      .-++. ..-++..++|.++-        ++|..               ..               +|..-.+-|||||+|
T Consensus       160 ~~~d~-~~~~~~~~~D~V~~--------d~p~p---------------~~---------------~l~~~~~~LKpGG~l  200 (266)
T d1o54a_         160 KVRDI-SEGFDEKDVDALFL--------DVPDP---------------WN---------------YIDKCWEALKGGGRF  200 (266)
T ss_dssp             ECCCG-GGCCSCCSEEEEEE--------CCSCG---------------GG---------------THHHHHHHEEEEEEE
T ss_pred             Eeccc-cccccccceeeeEe--------cCCCH---------------HH---------------HHHHHHhhcCCCCEE
Confidence            33343 34467778888763        33442               11               566777778999999


Q ss_pred             EEEecc
Q 043411          209 FLTFLG  214 (242)
Q Consensus       209 vl~~~g  214 (242)
                      ++..+.
T Consensus       201 v~~~P~  206 (266)
T d1o54a_         201 ATVCPT  206 (266)
T ss_dssp             EEEESS
T ss_pred             EEEeCc
Confidence            986643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0014  Score=57.13  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=19.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKI   72 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~i   72 (242)
                      .-.+|+|+|||+|..|+.+...+
T Consensus        98 pG~rVLE~GtGsG~lt~~LAr~v  120 (324)
T d2b25a1          98 PGDTVLEAGSGSGGMSLFLSKAV  120 (324)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEecccccHHHHHHHHHh
Confidence            45899999999999999887544

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.62  E-value=0.0029  Score=51.95  Aligned_cols=94  Identities=15%  Similarity=0.071  Sum_probs=47.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhc-CchhHHhhhhcCCCCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFES-LPDFYERIKKDKFGPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~-l~~~~~~l~~~~~~~~f~~~  128 (242)
                      +.-+|+|+|||+|..|..+. .++.   .    .|.. +...|+--|.-. ++-...+. +...  .+......++  ..
T Consensus        80 ~g~~VLeIGtGsGY~ta~la-~l~g---~----~g~~-~~~~V~~iE~~~-~l~~~a~~~l~~~--~~~~~~~~nv--~~  145 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFY-RYIK---A----KGVD-ADTRIVGIEHQA-ELVRRSKANLNTD--DRSMLDSGQL--LI  145 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHH-HHHH---H----SCCC-TTCEEEEEESCH-HHHHHHHHHHHHH--HHHHHHHTSE--EE
T ss_pred             CCCeEEEecCCCCHHHHHHH-HHhh---h----ccCC-cccEEEEEecCH-HHHHHHHHhhhhc--chhhcCccEE--EE
Confidence            45799999999999998775 2222   1    1211 123454433321 22211111 1100  0000011122  22


Q ss_pred             cccccccccCCCCceeEEEcccceeecccCCC
Q 043411          129 MLGSFYQRLFPSRGINFIHSSYSVHWLSKVPE  160 (242)
Q Consensus       129 vpgSFy~~l~p~~svdl~~Ss~alhWLs~~P~  160 (242)
                      +.++.++-..+.+.+|.|+...++.   ++|.
T Consensus       146 ~~~d~~~~~~~~~~fD~Iiv~~a~~---~~p~  174 (223)
T d1r18a_         146 VEGDGRKGYPPNAPYNAIHVGAAAP---DTPT  174 (223)
T ss_dssp             EESCGGGCCGGGCSEEEEEECSCBS---SCCH
T ss_pred             EecccccccccccceeeEEEEeech---hchH
Confidence            3456666666778899999977753   4454

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=96.60  E-value=0.0066  Score=52.16  Aligned_cols=117  Identities=12%  Similarity=0.024  Sum_probs=67.0

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCC-ceeecc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGP-CFIAGM  129 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~-~f~~~v  129 (242)
                      --+|+|++|++|..|+.+..        .         --+|+..|.-. ..-...      +.....+...+ .|+.+-
T Consensus       146 g~rVLDl~~gtG~~s~~~a~--------g---------~~~V~~vD~s~-~al~~a------~~n~~~ngl~~~~~i~~d  201 (318)
T d1wxxa2         146 GERALDVFSYAGGFALHLAL--------G---------FREVVAVDSSA-EALRRA------EENARLNGLGNVRVLEAN  201 (318)
T ss_dssp             EEEEEEETCTTTHHHHHHHH--------H---------EEEEEEEESCH-HHHHHH------HHHHHHTTCTTEEEEESC
T ss_pred             CCeeeccCCCCcHHHHHHHh--------c---------CCcEEeecchH-HHHHHH------HHHHHHcCCCCcceeecc
Confidence            47999999999999875531        1         24667777652 111111      11111122222 233332


Q ss_pred             ccccccccC-CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceE
Q 043411          130 LGSFYQRLF-PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRM  208 (242)
Q Consensus       130 pgSFy~~l~-p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l  208 (242)
                      ...+.+++. ..+++|+|+.        ++|....           +...     ...+.+++..++..-.+-|+|||.|
T Consensus       202 ~~~~~~~~~~~~~~fD~Vi~--------DpP~~~~-----------~~~~-----~~~~~~~~~~l~~~a~~lLkpGG~L  257 (318)
T d1wxxa2         202 AFDLLRRLEKEGERFDLVVL--------DPPAFAK-----------GKKD-----VERAYRAYKEVNLRAIKLLKEGGIL  257 (318)
T ss_dssp             HHHHHHHHHHTTCCEEEEEE--------CCCCSCC-----------STTS-----HHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             HHHHhhhhHhhhcCCCEEEE--------cCCcccc-----------chHH-----HHHHHHHHHHHHHHHHHHcCCCCEE
Confidence            223334333 4568999988        4454221           1111     3445667777999999999999999


Q ss_pred             EEEeccc
Q 043411          209 FLTFLGR  215 (242)
Q Consensus       209 vl~~~g~  215 (242)
                      ++++...
T Consensus       258 v~~scs~  264 (318)
T d1wxxa2         258 ATASCSH  264 (318)
T ss_dssp             EEEECCT
T ss_pred             EEEeCCc
Confidence            9977653

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.87  E-value=0.024  Score=48.55  Aligned_cols=117  Identities=12%  Similarity=0.031  Sum_probs=65.7

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      --+|+|+||++|..|+..+        ..    |   . -+|+..|+-. ..-.+.+      .....+.... -+..+-
T Consensus       146 g~~VLDl~~g~G~~si~~a--------~~----g---a-~~V~~vD~s~-~al~~a~------~N~~~ngl~~-~~~~~~  201 (324)
T d2as0a2         146 GDRVLDVFTYTGGFAIHAA--------IA----G---A-DEVIGIDKSP-RAIETAK------ENAKLNGVED-RMKFIV  201 (324)
T ss_dssp             TCEEEETTCTTTHHHHHHH--------HT----T---C-SEEEEEESCH-HHHHHHH------HHHHHTTCGG-GEEEEE
T ss_pred             CCeeecccCcccchhhhhh--------hc----C---C-cEEEeecCCH-HHHHHHH------HHHHHcCCCc-cceeee
Confidence            4699999999999988654        11    1   2 4677777752 1111111      1111111111 111233


Q ss_pred             cccccc---c-CCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          131 GSFYQR---L-FPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       131 gSFy~~---l-~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      ++.++-   + ...+++|+|++        ++|....           +...     ...+.+++.+++..-.+=|+|||
T Consensus       202 ~d~~~~~~~~~~~~~~fD~Vi~--------DpP~~~~-----------~~~~-----~~~~~~~y~~l~~~a~~ll~pGG  257 (324)
T d2as0a2         202 GSAFEEMEKLQKKGEKFDIVVL--------DPPAFVQ-----------HEKD-----LKAGLRAYFNVNFAGLNLVKDGG  257 (324)
T ss_dssp             SCHHHHHHHHHHTTCCEEEEEE--------CCCCSCS-----------SGGG-----HHHHHHHHHHHHHHHHTTEEEEE
T ss_pred             chhhhhhHHHHhccCCCCchhc--------CCccccC-----------CHHH-----HHHHHHHHHHHHHHHHHHcCCCc
Confidence            454432   2 24568999987        4444221           1111     24456677779988888999999


Q ss_pred             eEEEEeccc
Q 043411          207 RMFLTFLGR  215 (242)
Q Consensus       207 ~lvl~~~g~  215 (242)
                      +|++++...
T Consensus       258 ~lv~~s~s~  266 (324)
T d2as0a2         258 ILVTCSCSQ  266 (324)
T ss_dssp             EEEEEECCT
T ss_pred             EEEEEeCCc
Confidence            999987654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.49  E-value=0.016  Score=47.20  Aligned_cols=20  Identities=30%  Similarity=0.464  Sum_probs=17.0

Q ss_pred             CccEEeeecCCCCcchHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~   69 (242)
                      +.-+|+|+|||+|..|..+.
T Consensus        78 ~g~~VLeIGsGsGY~taila   97 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALIS   97 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHH
T ss_pred             ccceEEEecCCCChhHHHHH
Confidence            45799999999999998664

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.35  E-value=0.012  Score=47.15  Aligned_cols=27  Identities=19%  Similarity=0.415  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHhhhccCceEEEEeccc
Q 043411          189 RDFSAFLSLRSEEIVSGGRMFLTFLGR  215 (242)
Q Consensus       189 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~  215 (242)
                      .....+|..+..=|+|||+|++..+-.
T Consensus       118 ~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2         118 ENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             HHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             hhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            445678999999999999999988753

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=95.23  E-value=0.038  Score=46.44  Aligned_cols=74  Identities=26%  Similarity=0.331  Sum_probs=40.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC-CCceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF-GPCFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~-~~~f~~~  128 (242)
                      ...+|+|+|||+|.-++.+.        +.        |..+|+..|... +--.+-+      .-....+. ..++  .
T Consensus       110 ~~~~vld~g~GsG~i~~~la--------~~--------~~~~v~a~Dis~-~Al~~A~------~Na~~~~~~~~~~--i  164 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVA--------KF--------SDAIVFATDVSS-KAVEIAR------KNAERHGVSDRFF--V  164 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHH--------HH--------SSCEEEEEESCH-HHHHHHH------HHHHHTTCTTSEE--E
T ss_pred             cccEEEEeeeeeehhhhhhh--------hc--------ccceeeechhhh-hHHHHHH------HHHHHcCCCceeE--E
Confidence            35689999999998665443        11        357889988862 1000100      00011111 2233  2


Q ss_pred             cccccccccC-CCCceeEEEc
Q 043411          129 MLGSFYQRLF-PSRGINFIHS  148 (242)
Q Consensus       129 vpgSFy~~l~-p~~svdl~~S  148 (242)
                      ..+++++.+. ..+.+|+++|
T Consensus       165 ~~~~~~~~~~~~~~~fDlIVs  185 (271)
T d1nv8a_         165 RKGEFLEPFKEKFASIEMILS  185 (271)
T ss_dssp             EESSTTGGGGGGTTTCCEEEE
T ss_pred             eecccccccccccCcccEEEE
Confidence            4457766543 2368999999

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.21  E-value=0.03  Score=46.59  Aligned_cols=107  Identities=10%  Similarity=-0.038  Sum_probs=60.6

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      +.-+|+|+|||+|+.|+.+++        +        ...+|+..|+-.+=+..+-+++.       .++..+ .+..+
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~--------~--------~~~~V~avd~n~~a~~~~~~N~~-------~n~l~~-~v~~~  162 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAV--------Y--------GKAKVIAIEKDPYTFKFLVENIH-------LNKVED-RMSAY  162 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHH--------H--------TCCEEEEECCCHHHHHHHHHHHH-------HTTCTT-TEEEE
T ss_pred             CccEEEECcceEcHHHHHHHH--------h--------CCcEEEEecCCHHHHHHHHHHHH-------HhCCCc-eEEEE
Confidence            357999999999999987651        1        12578999986322222111111       111112 12234


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCceEE
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGRMF  209 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv  209 (242)
                      .|+. ..+.+.+..|.++.        ..|....                             .||..-.+-|++||++.
T Consensus       163 ~~D~-~~~~~~~~~D~Ii~--------~~p~~~~-----------------------------~~l~~a~~~l~~gG~lh  204 (260)
T d2frna1         163 NMDN-RDFPGENIADRILM--------GYVVRTH-----------------------------EFIPKALSIAKDGAIIH  204 (260)
T ss_dssp             CSCT-TTCCCCSCEEEEEE--------CCCSSGG-----------------------------GGHHHHHHHEEEEEEEE
T ss_pred             Ecch-HHhccCCCCCEEEE--------CCCCchH-----------------------------HHHHHHHhhcCCCCEEE
Confidence            4565 34556778898775        2333110                             14444444579999998


Q ss_pred             EEecccCCC
Q 043411          210 LTFLGRSIA  218 (242)
Q Consensus       210 l~~~g~~~~  218 (242)
                      +-.+...+.
T Consensus       205 ~~~~~~~~~  213 (260)
T d2frna1         205 YHNTVPEKL  213 (260)
T ss_dssp             EEEEEEGGG
T ss_pred             EEecccccc
Confidence            877765543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=94.40  E-value=0.099  Score=43.96  Aligned_cols=128  Identities=10%  Similarity=-0.001  Sum_probs=65.2

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      ...+|+|.+||+|...+.++..+    .++      ..+.++++-.|+-.  ..   -.+......+.  .....+.   
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l----~~~------~~~~~~~~g~di~~--~~---~~~a~~~~~~~--~~~~~~~---  176 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQL----ELK------GDVDVHASGVDVDD--LL---ISLALVGADLQ--RQKMTLL---  176 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHH----HTT------SSCEEEEEEEESCH--HH---HHHHHHHHHHH--TCCCEEE---
T ss_pred             CCCEEEeCCCCcchhHHHHHHHH----Hhc------cCccceEEEecccH--HH---HHHHHHHHHHh--hhhhhhh---
Confidence            47899999999998766555333    222      23467888777641  11   11111111111  1112221   


Q ss_pred             ccccccccCCCCceeEEEcc--cceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          130 LGSFYQRLFPSRGINFIHSS--YSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss--~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      .+++. ...+...+|++++.  +..+|-...-.    +....+..+.+     ..        +..|+..-.+-|+|||+
T Consensus       177 ~~d~~-~~~~~~~fD~vi~NPPy~~~~~~~~~~----~~~~~~~~~~~-----~~--------~~~Fi~~~~~~Lk~~G~  238 (328)
T d2f8la1         177 HQDGL-ANLLVDPVDVVISDLPVGYYPDDENAK----TFELCREEGHS-----FA--------HFLFIEQGMRYTKPGGY  238 (328)
T ss_dssp             ESCTT-SCCCCCCEEEEEEECCCSEESCHHHHT----TSTTCCSSSCE-----EH--------HHHHHHHHHHTEEEEEE
T ss_pred             ccccc-cccccccccccccCCCCCCCccchhhh----hcchhcccCcc-----hH--------HHHHHHHHHHhcCCCCc
Confidence            22332 33567789999985  22222111000    00000001111     01        12388888899999999


Q ss_pred             EEEEeccc
Q 043411          208 MFLTFLGR  215 (242)
Q Consensus       208 lvl~~~g~  215 (242)
                      +++.++..
T Consensus       239 ~~~I~p~~  246 (328)
T d2f8la1         239 LFFLVPDA  246 (328)
T ss_dssp             EEEEEEGG
T ss_pred             eEEEecCc
Confidence            99988754

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.85  E-value=0.24  Score=38.31  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=18.8

Q ss_pred             HHHHHHHHhhhccCceEEEEecc
Q 043411          192 SAFLSLRSEEIVSGGRMFLTFLG  214 (242)
Q Consensus       192 ~~FL~~Ra~EL~pGG~lvl~~~g  214 (242)
                      ..|+..-.+-|+|||++++.+..
T Consensus       124 ~~Fi~~al~~lk~~G~~~~I~p~  146 (223)
T d2ih2a1         124 GAFLEKAVRLLKPGGVLVFVVPA  146 (223)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             HHHHHHHHHhcccCCceEEEEee
Confidence            44788888889999999998864

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.67  E-value=0.24  Score=42.15  Aligned_cols=121  Identities=12%  Similarity=0.047  Sum_probs=60.8

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCC-ceeec
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGP-CFIAG  128 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~-~f~~~  128 (242)
                      +..+|+|+.|++|..|+.++.        .    |     .+|++-|... ..-...+.-.    .+......+ -|+.+
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~--------~----G-----A~V~~VD~s~-~al~~a~~N~----~ln~~~~~~~~~i~~  189 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAA--------A----G-----AEVTHVDASK-KAIGWAKENQ----VLAGLEQAPIRWICE  189 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHH--------T----T-----CEEEEECSCH-HHHHHHHHHH----HHHTCTTSCEEEECS
T ss_pred             CCCeEEEecCCCcHHHHHHHh--------C----C-----CeEEEEeChH-HHHHHHHHhh----hhhcccCCcEEEEeC
Confidence            457999999999999886651        1    1     3577777752 1111111000    010001112 23333


Q ss_pred             cccccccccC-CCCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCce
Q 043411          129 MLGSFYQRLF-PSRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGGR  207 (242)
Q Consensus       129 vpgSFy~~l~-p~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~  207 (242)
                      =--.|.++.. ..+.+|+|+.        +.|.-....|+.++-        .       +.|+...++...+=|+|||.
T Consensus       190 D~~~~l~~~~~~~~~fD~Iil--------DPP~f~~~~~~~~~~--------~-------~~~~~~l~~~~~~ll~~~g~  246 (309)
T d2igta1         190 DAMKFIQREERRGSTYDIILT--------DPPKFGRGTHGEVWQ--------L-------FDHLPLMLDICREILSPKAL  246 (309)
T ss_dssp             CHHHHHHHHHHHTCCBSEEEE--------CCCSEEECTTCCEEE--------H-------HHHHHHHHHHHHHTBCTTCC
T ss_pred             CHHHhHHHHhhcCCCCCEEEE--------CCCcccccccchhHH--------H-------HHHHHHHHHHHHHhcCCCCC
Confidence            2222323332 4567888887        444322222233321        1       23444566666677789998


Q ss_pred             EEEEeccc
Q 043411          208 MFLTFLGR  215 (242)
Q Consensus       208 lvl~~~g~  215 (242)
                      +++.+...
T Consensus       247 ~ll~t~~s  254 (309)
T d2igta1         247 GLVLTAYS  254 (309)
T ss_dssp             EEEEEECC
T ss_pred             EEEEecCC
Confidence            77766543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=93.53  E-value=0.044  Score=46.87  Aligned_cols=117  Identities=9%  Similarity=0.102  Sum_probs=62.6

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCC--CC-ceee
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKF--GP-CFIA  127 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~--~~-~f~~  127 (242)
                      --+|+|+.|++|..|+..+.        .    |    .-.|+.-|+.. ..-.+.+      .....+..  .+ .|+.
T Consensus       145 g~~VLdlf~~~G~~sl~aa~--------~----g----a~~V~~vD~s~-~a~~~a~------~N~~~n~l~~~~~~~i~  201 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAM--------G----G----AMATTSVDLAK-RSRALSL------AHFEANHLDMANHQLVV  201 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHH--------T----T----BSEEEEEESCT-THHHHHH------HHHHHTTCCCTTEEEEE
T ss_pred             CCceeecCCCCcHHHHHHHh--------C----C----CceEEEecCCH-HHHHHHH------HHHHHhcccCcceEEEE
Confidence            46999999999998875431        1    1    24677777752 1111111      11111111  12 2444


Q ss_pred             ccccccccccCC-CCceeEEEcccceeecccCCCcccCCCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          128 GMLGSFYQRLFP-SRGINFIHSSYSVHWLSKVPENLENNKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       128 ~vpgSFy~~l~p-~~svdl~~Ss~alhWLs~~P~~~~~nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      +---.|.+++-. .+.+|+|+.        ++| ....++..+               ..+.+|+..+++.-.+=|+|||
T Consensus       202 ~d~~~~l~~~~~~~~~fD~Ii~--------DPP-~f~~~~~~~---------------~~~~~~~~~L~~~a~~ll~pgG  257 (317)
T d2b78a2         202 MDVFDYFKYARRHHLTYDIIII--------DPP-SFARNKKEV---------------FSVSKDYHKLIRQGLEILSENG  257 (317)
T ss_dssp             SCHHHHHHHHHHTTCCEEEEEE--------CCC-CC-----CC---------------CCHHHHHHHHHHHHHHTEEEEE
T ss_pred             ccHHHHHHHHHhhcCCCCEEEE--------cCh-hhccchhHH---------------HHHHHHHHHHHHHHHHHcCCCC
Confidence            422233344433 357898887        333 332222111               1234566668888888899999


Q ss_pred             eEEEEecc
Q 043411          207 RMFLTFLG  214 (242)
Q Consensus       207 ~lvl~~~g  214 (242)
                      +|++++..
T Consensus       258 ~l~~~scs  265 (317)
T d2b78a2         258 LIIASTNA  265 (317)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEeCC
Confidence            99997764

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=93.36  E-value=0.3  Score=38.03  Aligned_cols=21  Identities=33%  Similarity=0.427  Sum_probs=17.1

Q ss_pred             CCccEEeeecCCCCcchHHHH
Q 043411           49 PGCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~   69 (242)
                      .+..+|+|+|||.|.-+..+.
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~   41 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVV   41 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHH
T ss_pred             CCCCeEEEEeccCCcceEEEE
Confidence            456799999999999977554

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.16  Score=41.57  Aligned_cols=77  Identities=6%  Similarity=-0.002  Sum_probs=44.1

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcC-CCCceee-
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDK-FGPCFIA-  127 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~-~~~~f~~-  127 (242)
                      ...+|+|+|||+|.-++.+....               |..+++..|.-. +--.+-+      .-.+.+. ...+.+. 
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~---------------~~~~~~~~Di~~-~al~~A~------~N~~~n~l~~~~~~~~  118 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATL---------------NGWYFLATEVDD-MCFNYAK------KNVEQNNLSDLIKVVK  118 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH---------------HCCEEEEEESCH-HHHHHHH------HHHHHTTCTTTEEEEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhC---------------CCccccceecCH-HHHHHHH------HHHHHhCCCcceeeee
Confidence            46899999999999998876433               347788888762 1111111      1111111 1123322 


Q ss_pred             -ccccccccccC--CCCceeEEEc
Q 043411          128 -GMLGSFYQRLF--PSRGINFIHS  148 (242)
Q Consensus       128 -~vpgSFy~~l~--p~~svdl~~S  148 (242)
                       .....++..++  ..+++|+++|
T Consensus       119 ~~~~~~~~~~~~~~~~~~fD~ivs  142 (250)
T d2h00a1         119 VPQKTLLMDALKEESEIIYDFCMC  142 (250)
T ss_dssp             CCTTCSSTTTSTTCCSCCBSEEEE
T ss_pred             eccHHhhhhhhhhcccCceeEEEe
Confidence             23445555554  3568999999

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.42  E-value=0.16  Score=42.46  Aligned_cols=130  Identities=15%  Similarity=0.151  Sum_probs=76.9

Q ss_pred             CccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeecc
Q 043411           50 GCFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGM  129 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~v  129 (242)
                      .-.+|+|+-+|.|.-|..+.+..               ....|+-+|.-.+-...+-+.+..       ....++.+.. 
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~---------------~~~~i~a~d~~~~R~~~l~~~~~r-------~g~~~~~~~~-  158 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVA---------------PEAQVVAVDIDEQRLSRVYDNLKR-------LGMKATVKQG-  158 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHC---------------TTCEEEEEESSTTTHHHHHHHHHH-------TTCCCEEEEC-
T ss_pred             ccceeEeccCccccchhhhhhhh---------------hhhhhhhhhcchhhhhhHhhhhhc-------ccccceeeec-
Confidence            35799999999999999776311               136789999987766665554432       1222333322 


Q ss_pred             ccccccccCCCCceeEEEcccceeecccCCCcccC----CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043411          130 LGSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN----NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSG  205 (242)
Q Consensus       130 pgSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG  205 (242)
                      ....+....++..+|.|.-        ++|++-..    +.+--|  ..++..+.+--.-|     .++|.+-++-|+||
T Consensus       159 ~~~~~~~~~~~~~fd~IL~--------DaPCSg~G~~rr~p~~~~--~~~~~~~~~l~~lQ-----~~iL~~a~~~lk~g  223 (284)
T d1sqga2         159 DGRYPSQWCGEQQFDRILL--------DAPCSATGVIRRHPDIKW--LRRDRDIPELAQLQ-----SEILDAIWPHLKTG  223 (284)
T ss_dssp             CTTCTHHHHTTCCEEEEEE--------ECCCCCGGGTTTCTTHHH--HCCTTHHHHHHHHH-----HHHHHHHGGGEEEE
T ss_pred             cccccchhcccccccEEEE--------eccccccCccccccchhh--ccccchhhHHHHHH-----HHHHHHHHHhcCCC
Confidence            2233344456677888875        77775432    111111  11222222222222     33788778889999


Q ss_pred             ceEEEEecccCC
Q 043411          206 GRMFLTFLGRSI  217 (242)
Q Consensus       206 G~lvl~~~g~~~  217 (242)
                      |+||-+++.-..
T Consensus       224 G~lvYsTCS~~~  235 (284)
T d1sqga2         224 GTLVYATCSVLP  235 (284)
T ss_dssp             EEEEEEESCCCG
T ss_pred             ceEEEeeecCch
Confidence            999999987644

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=91.22  E-value=0.065  Score=41.40  Aligned_cols=21  Identities=24%  Similarity=0.061  Sum_probs=16.3

Q ss_pred             CCccEEeeecCCCCcchHHHH
Q 043411           49 PGCFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~   69 (242)
                      ++.-+|+|+|||+|..++..+
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~   60 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAA   60 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHH
T ss_pred             cCCCeEEEeccccchhhhhhh
Confidence            345699999999998776443

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.76  E-value=0.049  Score=43.61  Aligned_cols=18  Identities=22%  Similarity=0.075  Sum_probs=14.9

Q ss_pred             ccEEeeecCCCCcchHHH
Q 043411           51 CFNVADLGCSSGPNTLLV   68 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~   68 (242)
                      --+|+|+|||+|..++.+
T Consensus        49 Gk~VLDlGcGtG~l~i~a   66 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGS   66 (197)
T ss_dssp             TSEEEEETCTTCHHHHHH
T ss_pred             CCEEEEeCCCCcHHHHHH
Confidence            469999999999877644

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.21  E-value=0.058  Score=42.85  Aligned_cols=19  Identities=32%  Similarity=0.296  Sum_probs=15.5

Q ss_pred             ccEEeeecCCCCcchHHHH
Q 043411           51 CFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~   69 (242)
                      -.+|+|+|||+|..++.++
T Consensus        47 g~~vLDlg~GtG~l~i~a~   65 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGAL   65 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHH
T ss_pred             CCEEEECcCcchHHHHHHH
Confidence            4689999999998877543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=89.53  E-value=0.39  Score=38.93  Aligned_cols=109  Identities=22%  Similarity=0.284  Sum_probs=57.9

Q ss_pred             CCccEEeeecCCCCcchHHHHHH------------HHHHHHHHHhhhcCCCCceEEEecCCCCCchH-----HHhhcCch
Q 043411           49 PGCFNVADLGCSSGPNTLLVVSK------------IIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFN-----SIFESLPD  111 (242)
Q Consensus        49 ~~~~~IaDlGCs~G~ns~~~~~~------------ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn-----~lf~~l~~  111 (242)
                      .+.-+|+|+|||+|..|..+++.            .++.+++++.    ..+.++++..|.-.-|+.     .++.+||=
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~----~~~n~~i~~~D~l~~~~~~~~~~~vv~NLPY   95 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLV----DHDNFQVLNKDILQFKFPKNQSYKIFGNIPY   95 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTT----TCCSEEEECCCGGGCCCCSSCCCEEEEECCG
T ss_pred             CCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhh----cccchhhhhhhhhhccccccccceeeeeehh
Confidence            35688999999999999988754            3455555432    234688888886433332     34455552


Q ss_pred             hHHh-----hhhcCCCCceeeccccccccccC-CCCceeEEEc-ccceeecccCCCc
Q 043411          112 FYER-----IKKDKFGPCFIAGMLGSFYQRLF-PSRGINFIHS-SYSVHWLSKVPEN  161 (242)
Q Consensus       112 ~~~~-----l~~~~~~~~f~~~vpgSFy~~l~-p~~svdl~~S-s~alhWLs~~P~~  161 (242)
                      .-.+     +-........+.++-.-|-+|+. .++++.+.+. ++-+..+..+|+.
T Consensus        96 nIss~il~~ll~~~~~~~~vlm~QkEvA~Ri~a~~~~lsv~~~~~~~~~~~~~V~~~  152 (235)
T d1qama_          96 NISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLALFLMAEVDISILSMVPRE  152 (235)
T ss_dssp             GGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHHHHHTTTEEEEEEEEECGG
T ss_pred             hhhHHHHHHHHhhhhhhhhhhhhhHHHHHhhhcccccceEEEeeccccccccccChh
Confidence            1111     10111122233345555556666 4455433222 2234555555543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.99  E-value=0.11  Score=39.13  Aligned_cols=19  Identities=32%  Similarity=0.142  Sum_probs=15.6

Q ss_pred             ccEEeeecCCCCcchHHHH
Q 043411           51 CFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~   69 (242)
                      --+|+|+|||+|..++..+
T Consensus        15 g~~vlDl~~GtG~~~iea~   33 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAV   33 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHH
T ss_pred             CCeEEEcCCccCHHHHHHH
Confidence            4799999999998877443

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.31  E-value=1.9  Score=35.60  Aligned_cols=34  Identities=21%  Similarity=0.223  Sum_probs=26.1

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCC
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLP   98 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp   98 (242)
                      -.+|+|+.||.|.-|..+.+.+ +             ....|+-+|.-
T Consensus        95 g~~vLD~cAapGgKt~~la~l~-~-------------~~~~i~a~d~~  128 (293)
T d2b9ea1          95 GSHVIDACAAPGNKTSHLAALL-K-------------NQGKIFAFDLD  128 (293)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHH-T-------------TCSEEEEEESC
T ss_pred             cceEEecccchhhHHHHHHHHh-c-------------CCceEeeecCC
Confidence            5689999999999999876333 1             24678889975

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.57  E-value=1  Score=37.78  Aligned_cols=129  Identities=13%  Similarity=0.024  Sum_probs=68.5

Q ss_pred             ccEEeeecCCCCcchHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCCCCchHHHhhcCchhHHhhhhcCCCCceeeccc
Q 043411           51 CFNVADLGCSSGPNTLLVVSKIIDSIHKLYHQVNKKLPEFQVFLNDLPGNDFNSIFESLPDFYERIKKDKFGPCFIAGML  130 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~~~ii~~i~~~~~~~~~~~~~~qv~~nDLp~NDFn~lf~~l~~~~~~l~~~~~~~~f~~~vp  130 (242)
                      --+|+|+-||.|.-|..+.+..              .....++.+|.-.+-...+-+.+.       .....++-+.  .
T Consensus       117 g~~vlD~CAapGgKt~~l~~~~--------------~~~~~i~a~d~~~~r~~~l~~~~~-------r~~~~~i~~~--~  173 (313)
T d1ixka_         117 GEIVADMAAAPGGKTSYLAQLM--------------RNDGVIYAFDVDENRLRETRLNLS-------RLGVLNVILF--H  173 (313)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHT--------------TTCSEEEEECSCHHHHHHHHHHHH-------HHTCCSEEEE--S
T ss_pred             cceeeecccchhhhhHhhhhhc--------------ccccceeeeccCHHHHHHHHHHHH-------HHHhhccccc--c
Confidence            4689999999999988776332              124778888886333322222221       1122233222  1


Q ss_pred             cccccccCCCCceeEEEcccceeecccCCCcccC----CCCceEEcCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 043411          131 GSFYQRLFPSRGINFIHSSYSVHWLSKVPENLEN----NKRDIYITKSSPPSVCQAFWEQFQRDFSAFLSLRSEEIVSGG  206 (242)
Q Consensus       131 gSFy~~l~p~~svdl~~Ss~alhWLs~~P~~~~~----nkg~i~~~~~s~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG  206 (242)
                      .++..--.....+|.|.-        ++|++-..    +++.-|  ..++..+.+     ..+-=.++|..-++-|+|||
T Consensus       174 ~d~~~~~~~~~~fD~ILv--------DaPCSg~G~~~r~p~~~~--~~~~~~~~~-----l~~~Q~~iL~~a~~~lk~gG  238 (313)
T d1ixka_         174 SSSLHIGELNVEFDKILL--------DAPCTGSGTIHKNPERKW--NRTMDDIKF-----CQGLQMRLLEKGLEVLKPGG  238 (313)
T ss_dssp             SCGGGGGGGCCCEEEEEE--------ECCTTSTTTCC----------CCHHHHHH-----HHHHHHHHHHHHHHHEEEEE
T ss_pred             ccccccccccccccEEEE--------ccccccCCceeeccchhh--hhhhhHHHH-----HHHHHHHHHHhhhheeCCCc
Confidence            222111123456777654        77876442    111111  111222222     22222347888888999999


Q ss_pred             eEEEEecccCC
Q 043411          207 RMFLTFLGRSI  217 (242)
Q Consensus       207 ~lvl~~~g~~~  217 (242)
                      +||-+++.-..
T Consensus       239 ~lVYsTCSl~~  249 (313)
T d1ixka_         239 ILVYSTCSLEP  249 (313)
T ss_dssp             EEEEEESCCCG
T ss_pred             EEEEeeccCCh
Confidence            99999987543

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=83.86  E-value=0.35  Score=39.56  Aligned_cols=22  Identities=18%  Similarity=0.146  Sum_probs=19.1

Q ss_pred             CccEEeeecCCCCcchHHHHHH
Q 043411           50 GCFNVADLGCSSGPNTLLVVSK   71 (242)
Q Consensus        50 ~~~~IaDlGCs~G~ns~~~~~~   71 (242)
                      ..-+|+|+|||+|..|..+++.
T Consensus        29 ~~d~VLEIGpG~G~LT~~L~~~   50 (245)
T d1yuba_          29 ETDTVYEIGTGKGHLTTKLAKI   50 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHH
T ss_pred             CCCeEEEECCCccHHHHHHHhh
Confidence            4689999999999999988754

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=81.70  E-value=0.71  Score=38.91  Aligned_cols=20  Identities=25%  Similarity=0.281  Sum_probs=17.1

Q ss_pred             HHHHHHhhhccCceEEEEec
Q 043411          194 FLSLRSEEIVSGGRMFLTFL  213 (242)
Q Consensus       194 FL~~Ra~EL~pGG~lvl~~~  213 (242)
                      |++...+-|+|||++++..-
T Consensus       177 F~~~~~~~L~p~Gvlv~~~~  196 (312)
T d1uira_         177 FYRLVKAHLNPGGVMGMQTG  196 (312)
T ss_dssp             HHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHhcCCCceEEEecC
Confidence            88888889999999998653

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=80.96  E-value=0.71  Score=35.47  Aligned_cols=19  Identities=21%  Similarity=0.020  Sum_probs=16.3

Q ss_pred             ccEEeeecCCCCcchHHHH
Q 043411           51 CFNVADLGCSSGPNTLLVV   69 (242)
Q Consensus        51 ~~~IaDlGCs~G~ns~~~~   69 (242)
                      ..+|+|++||||..++..+
T Consensus        44 ~~~vLDlfaGsG~~gieal   62 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEAL   62 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHH
T ss_pred             hhhhhhhhccccceeeeEE
Confidence            4689999999999988665