Citrus Sinensis ID: 043432

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
EINPFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY
Secondary Structure (PSIPRED)
cccccEEEEEEEEEEEcccccccccEEEEHHHHHHcccccccccccEEEEEEccccEEEEEEEEEEcccccEEEEEccccccEEccccccccEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHEEccHccccccccEEEcHHHHHHHcccccccccEEEEEEEcccccEEEEEEEEcccccccEEEEccccHHHHHcccccccEEEEEEccccccc
Coil and Loop (DISEMBL)
EINPFLMRFLFEKQlknsdvnaagrivlpkklaetylppvnekagfwmhledmdfnkvwtfkfrfwpnnrgrmyiFENTRAFIKRYCLELGDYIMVYKDELEGSY
Flexible Loop (DISEMBL)
EINPFLMRFLFEkqlknsdvnaaGRIVlpkklaetylppVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY
Low Complexity Region (SEG)
EINPFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY
Disordered region (IsUnstruct)
****FLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYK*******
Disordered Region (DISOPRED)
****FLM*FLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDEL****
Disordered Region (DISEMBL)
EINPFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY
Disordered Region (DISPRO)
EINPFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EINPFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q9LW31	313	B3 domain-containing tran	yes	no	1.0	0.335	0.514	2e-27
P26307	691	Regulatory protein vivipa	N/A	no	0.942	0.143	0.474	1e-24
Q01593	720	B3 domain-containing tran	no	no	0.942	0.137	0.494	1e-24
A4LBC0	402	B3 domain-containing prot	yes	no	0.876	0.228	0.484	5e-23
P37398	727	B3 domain-containing prot	yes	no	0.933	0.134	0.464	8e-23
Q7XKC4	438	Putative B3 domain-contai	no	no	0.933	0.223	0.428	1e-22
Q1PFR7	363	B3 domain-containing tran	no	no	0.942	0.272	0.464	2e-22
Q7XKC5	433	B3 domain-containing prot	no	no	0.866	0.210	0.439	2e-22
Q6Z1Z3	362	B3 domain-containing prot	no	no	0.933	0.270	0.428	8e-21
Q5CCK4	780	B3 domain-containing tran	no	no	0.885	0.119	0.436	1e-17

>sp|Q9LW31|FUS3_ARATH B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana GN=FUS3 PE=2 SV=2

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 77/105 (73%)

Query: 1   EINPFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWT 60
           +I+P  +RFLF+K+LKNSDV++  R++LPKK AE +LP +  K G  + +ED+D   VWT
Sbjct: 82  KIDPRKLRFLFQKELKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWT 141

Query: 61  FKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           FK+R+WPNN  RMY+ ENT  F+  + L+LGD+IMVY+D    +Y
Sbjct: 142 FKYRYWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDLYSNNY 186

Transcription regulator involved in gene regulation during late embryogenesis. Its expression to the epidermis is sufficient to control foliar organ identity by regulating positively the synthesis abscisic acid (ABA) and negatively gibberellin production. Negatively regulates TTG1 in the embryo. Positively regulates the abundance of the ABI3 protein in the seed.
Arabidopsis thaliana (taxid: 3702)

>sp|P26307|VIV1_MAIZE Regulatory protein viviparous-1 OS=Zea mays GN=VP1 PE=2 SV=1

 Score =  112 bits (279), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/99 (47%), Positives = 68/99 (68%)

Query: 7   MRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFW 66
           +RFL +K LK SDV + GRIVLPKK AE +LP +  + G  + +ED+  ++VW  ++RFW
Sbjct: 513 LRFLLQKVLKQSDVGSLGRIVLPKKEAEVHLPELKTRDGISIPMEDIGTSRVWNMRYRFW 572

Query: 67  PNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           PNN+ RMY+ ENT  F++   L+ GD+I++Y D   G Y
Sbjct: 573 PNNKSRMYLLENTGEFVRSNELQEGDFIVIYSDVKSGKY 611

Transcriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.

Zea mays (taxid: 4577)

>sp|Q01593|ABI3_ARATH B3 domain-containing transcription factor ABI3 OS=Arabidopsis thaliana GN=ABI3 PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/99 (49%), Positives = 68/99 (68%)

Query: 7   MRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFW 66
           +RFL +K LK SDV   GRIVLPKK AET+LP +  + G  + +ED+  ++VW  ++RFW
Sbjct: 568 LRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISLAMEDIGTSRVWNMRYRFW 627

Query: 67  PNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           PNN+ RMY+ ENT  F+K   L+ GD+I++Y D   G Y
Sbjct: 628 PNNKSRMYLLENTGDFVKTNGLQEGDFIVIYSDVKCGKY 666

Participates in abscisic acid-regulated gene expression during seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|A4LBC0|LFL1_ORYSJ B3 domain-containing protein LFL1 OS=Oryza sativa subsp. japonica GN=LFL1 PE=2 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/97 (48%), Positives = 69/97 (71%), Gaps = 5/97 (5%)

Query: 7   MRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAG---FWMHLEDMDFNKVWTFKF 63
           +R + +K+L+ SDV+  GRIVLPKK AE YLP +  K G     MH  D+   ++WTFK+
Sbjct: 177 LRVILQKELRYSDVSQLGRIVLPKKEAEAYLPILTSKDGKKSLCMH--DLQNAQLWTFKY 234

Query: 64  RFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDE 100
           R+WPNN+ RMY+ ENT  +++ + L+LGD I++YKD+
Sbjct: 235 RYWPNNKSRMYVLENTGDYVRTHDLQLGDSIVIYKDD 271

Transcription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P37398|VIV_ORYSJ B3 domain-containing protein VP1 OS=Oryza sativa subsp. japonica GN=VP1 PE=1 SV=3

 Score =  105 bits (262), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/99 (46%), Positives = 68/99 (68%), Gaps = 1/99 (1%)

Query: 7   MRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFW 66
           +RFL +K LK SDV + GRIVLPK+ AE +LP +  + G  + +ED+  ++VW  ++RFW
Sbjct: 533 LRFLLQKVLKQSDVGSLGRIVLPKE-AEVHLPELKTRDGVSIPMEDIGTSQVWNMRYRFW 591

Query: 67  PNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           PNN+ RMY+ ENT  F++   L+ GD+I++Y D   G Y
Sbjct: 592 PNNKSRMYLLENTGDFVRSNELQEGDFIVIYSDIKSGKY 630

Probable transcription factor that may participate in abscisic acid-regulated gene expression during seed development. May be required for seed maturation and dormancy induction.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XKC4|Y4765_ORYSJ Putative B3 domain-containing protein Os04g0676650 OS=Oryza sativa subsp. japonica GN=Os04g0676650 PE=3 SV=2

 Score =  104 bits (260), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 64/98 (65%)

Query: 8   RFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWP 67
           R +  K+L NSDV   GRIV+PK+ AE +LP ++++ G  + ++D  F   W FK+RFWP
Sbjct: 299 RVILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVTLKMDDFKFETTWNFKYRFWP 358

Query: 68  NNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           NN+ RMY+ E+T  F+K + L+ GD  ++YK    G +
Sbjct: 359 NNKSRMYVLESTGGFVKHHGLQTGDIFIIYKSSESGKF 396

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q1PFR7|LEC2_ARATH B3 domain-containing transcription factor LEC2 OS=Arabidopsis thaliana GN=LEC2 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 70/99 (70%)

Query: 7   MRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFW 66
           +R L EK+LKNSDV + GRIVLPK+ AE  LP +++K G  + + D+   + W+FK++FW
Sbjct: 167 LRVLCEKELKNSDVGSLGRIVLPKRDAEANLPKLSDKEGIVVQMRDVFSMQSWSFKYKFW 226

Query: 67  PNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
            NN+ RMY+ ENT  F+K+   E+GD++ +Y+DE +  Y
Sbjct: 227 SNNKSRMYVLENTGEFVKQNGAEIGDFLTIYEDESKNLY 265

Transcription regulator that plays a central role in embryo development. Required for the maintenance of suspensor morphology, specification of cotyledon identity, progression through the maturation phase and suppression of premature germination. Ectopic expression is sufficient to promote somatic embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XKC5|IDEFH_ORYSJ B3 domain-containing protein Os04g0676600 OS=Oryza sativa subsp. japonica GN=Os04g0676600 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 62/91 (68%)

Query: 8   RFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWP 67
           R +  K+L NSDV   GRIV+PK+ AE +LP ++++ G  + ++D      W FK+RFWP
Sbjct: 294 RVILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDDFKLETTWNFKYRFWP 353

Query: 68  NNRGRMYIFENTRAFIKRYCLELGDYIMVYK 98
           NN+ RMY+ E+T  F+K++ L+ GD  ++YK
Sbjct: 354 NNKSRMYVLESTGGFVKQHVLQTGDIFIIYK 384

Probable transcription regulator that binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z1Z3|IDEF1_ORYSJ B3 domain-containing protein IDEF1 OS=Oryza sativa subsp. japonica GN=IDEF1 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 63/98 (64%)

Query: 8   RFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWP 67
           + +  K+L  SDV   GRIVLPKK AE  LPP+ ++    +H++DM     W FK+R+WP
Sbjct: 250 QVILRKELTKSDVGNVGRIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVTWKFKYRYWP 309

Query: 68  NNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           NN+ RMYI ++   F+K + L+ GD I++YK+   G +
Sbjct: 310 NNKSRMYILDSAGEFLKTHGLQAGDVIIIYKNLAPGKF 347

Transcription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5CCK4|VAL2_ARATH B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 54/94 (57%), Gaps = 1/94 (1%)

Query: 10  LFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNN 69
           LFEK L  SD    GR+VLPK  AE Y PP++   G  + ++D+   K W F+FRFWPNN
Sbjct: 285 LFEKVLSASDAGRIGRLVLPKACAEAYFPPISLPEGLPLKIQDIK-GKEWVFQFRFWPNN 343

Query: 70  RGRMYIFENTRAFIKRYCLELGDYIMVYKDELEG 103
             RMY+ E     I+   L+ GD +   + E EG
Sbjct: 344 NSRMYVLEGVTPCIQSMQLQAGDTVTFSRTEPEG 377

Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
449466053	206	PREDICTED: B3 domain-containing transcri	0.990	0.504	0.509	6e-26
3582518	310	FUSCA3 [Arabidopsis thaliana]	1.0	0.338	0.514	8e-26
18405094	313	B3 domain-containing transcription facto	1.0	0.335	0.514	9e-26
45935049	310	transcriptional regulator [Arabidopsis t	1.0	0.338	0.514	9e-26
3582520	312	FUSCA3 [Arabidopsis thaliana]	1.0	0.336	0.514	9e-26
255543601	321	conserved hypothetical protein [Ricinus	0.942	0.308	0.515	1e-25
297818218	314	hypothetical protein ARALYDRAFT_484455 [	1.0	0.334	0.504	2e-25
296082287	287	unnamed protein product [Vitis vinifera]	0.885	0.324	0.569	5e-25
225451577	286	PREDICTED: B3 domain-containing transcri	0.885	0.325	0.569	5e-25
356571617	332	PREDICTED: B3 domain-containing transcri	1.0	0.316	0.495	5e-25

>gi|449466053|ref|XP_004150741.1| PREDICTED: B3 domain-containing transcription factor FUS3-like, partial [Cucumis sativus] gi|449531283|ref|XP_004172616.1| PREDICTED: B3 domain-containing transcription factor FUS3-like, partial [Cucumis sativus]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 76/104 (73%)

Query: 2   INPFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTF 61
           I+P  ++FLF+K+LKNSDV++  R++LPKK AET+LP +  K G  + ++D+D   VW F
Sbjct: 2   IDPRKLKFLFQKELKNSDVSSLRRMILPKKAAETHLPALESKEGMMITMDDLDGVHVWNF 61

Query: 62  KFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           K+RFWPNN  RMY+ ENT  F+  + L LGD+IM+Y+D  E +Y
Sbjct: 62  KYRFWPNNNSRMYVLENTGDFVNAHGLHLGDFIMIYQDCEEHNY 105

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3582518|gb|AAC35246.1| FUSCA3 [Arabidopsis thaliana]

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 77/105 (73%)

Query: 1   EINPFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWT 60
           +I+P  +RFLF+K+LKNSDV++  R++LPKK AE +LP +  K G  + +ED+D   VWT
Sbjct: 81  KIDPRKLRFLFQKELKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWT 140

Query: 61  FKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           FK+R+WPNN  RMY+ ENT  F+  + L+LGD+IMVY+D    +Y
Sbjct: 141 FKYRYWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDLYSNNY 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405094|ref|NP_566799.1| B3 domain-containing transcription factor FUS3 [Arabidopsis thaliana] gi|238064967|sp|Q9LW31.2|FUS3_ARATH RecName: Full=B3 domain-containing transcription factor FUS3; AltName: Full=Protein FUSCA3 gi|332643695|gb|AEE77216.1| B3 domain-containing transcription factor FUS3 [Arabidopsis thaliana]

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 77/105 (73%)

Query: 1   EINPFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWT 60
           +I+P  +RFLF+K+LKNSDV++  R++LPKK AE +LP +  K G  + +ED+D   VWT
Sbjct: 82  KIDPRKLRFLFQKELKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWT 141

Query: 61  FKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           FK+R+WPNN  RMY+ ENT  F+  + L+LGD+IMVY+D    +Y
Sbjct: 142 FKYRYWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDLYSNNY 186

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45935049|gb|AAS79559.1| transcriptional regulator [Arabidopsis thaliana] gi|46367488|emb|CAG25870.1| hypothetical protein [Arabidopsis thaliana]

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 77/105 (73%)

Query: 1   EINPFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWT 60
           +I+P  +RFLF+K+LKNSDV++  R++LPKK AE +LP +  K G  + +ED+D   VWT
Sbjct: 82  KIDPRKLRFLFQKELKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWT 141

Query: 61  FKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           FK+R+WPNN  RMY+ ENT  F+  + L+LGD+IMVY+D    +Y
Sbjct: 142 FKYRYWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDLYSNNY 186

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3582520|gb|AAC35247.1| FUSCA3 [Arabidopsis thaliana]

 Score =  120 bits (302), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 77/105 (73%)

Query: 1   EINPFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWT 60
           +I+P  +RFLF+K+LKNSDV++  R++LPKK AE +LP +  K G  + +ED+D   VWT
Sbjct: 81  KIDPRKLRFLFQKELKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWT 140

Query: 61  FKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           FK+R+WPNN  RMY+ ENT  F+  + L+LGD+IMVY+D    +Y
Sbjct: 141 FKYRYWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDLYSNNY 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543601|ref|XP_002512863.1| conserved hypothetical protein [Ricinus communis] gi|223547874|gb|EEF49366.1| conserved hypothetical protein [Ricinus communis]

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/99 (51%), Positives = 74/99 (74%)

Query: 7   MRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFW 66
           + FLF+K+LKNSDV++  R+VLPKK AE +LP +  K G ++ ++D+D   VW+FK+R+W
Sbjct: 128 LSFLFQKELKNSDVSSLKRMVLPKKAAEAHLPVLESKEGIFISMDDLDGLHVWSFKYRYW 187

Query: 67  PNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           PNN  RMY+ ENT  F+  + L+LGD+IMVYKD+   +Y
Sbjct: 188 PNNNSRMYVLENTGDFVNTHGLQLGDFIMVYKDDQNQNY 226

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818218|ref|XP_002876992.1| hypothetical protein ARALYDRAFT_484455 [Arabidopsis lyrata subsp. lyrata] gi|297322830|gb|EFH53251.1| hypothetical protein ARALYDRAFT_484455 [Arabidopsis lyrata subsp. lyrata]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 77/105 (73%)

Query: 1   EINPFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWT 60
           +I+P  +RFLF+K+LKNSDV++  R++LPKK AE +LP +  K G  + +ED++   VWT
Sbjct: 85  KIDPTKLRFLFQKELKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLNGLHVWT 144

Query: 61  FKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           FK+R+WPNN  RMY+ ENT  F+  + L+LGD+IMVY+D    +Y
Sbjct: 145 FKYRYWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDLYSNNY 189

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082287|emb|CBI21292.3| unnamed protein product [Vitis vinifera]

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 7   MRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFW 66
           +RFLFEK+LKNSDV +  R+VLPKK AET+LP +  K G  + + D+D   VW FK+RFW
Sbjct: 91  LRFLFEKELKNSDVGSLRRMVLPKKSAETHLPLLEAKEGILITMYDLDGQHVWNFKYRFW 150

Query: 67  PNNRGRMYIFENTRAFIKRYCLELGDYIMVYKD 99
           PNN  RMY+ ENT  F+  + L+LGDYIM+Y D
Sbjct: 151 PNNNSRMYVLENTGEFVNVHGLQLGDYIMLYHD 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451577|ref|XP_002275489.1| PREDICTED: B3 domain-containing transcription factor FUS3 [Vitis vinifera]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 68/93 (73%)

Query: 7   MRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFW 66
           +RFLFEK+LKNSDV +  R+VLPKK AET+LP +  K G  + + D+D   VW FK+RFW
Sbjct: 90  LRFLFEKELKNSDVGSLRRMVLPKKSAETHLPLLEAKEGILITMYDLDGQHVWNFKYRFW 149

Query: 67  PNNRGRMYIFENTRAFIKRYCLELGDYIMVYKD 99
           PNN  RMY+ ENT  F+  + L+LGDYIM+Y D
Sbjct: 150 PNNNSRMYVLENTGEFVNVHGLQLGDYIMLYHD 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571617|ref|XP_003553973.1| PREDICTED: B3 domain-containing transcription factor FUS3-like [Glycine max]

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/105 (49%), Positives = 73/105 (69%)

Query: 1   EINPFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWT 60
           EI+   +RFLF+K+LKNSDV++  R++LPKK AE +LP +  K G  + ++D+D   VW+
Sbjct: 134 EIDQRRLRFLFQKELKNSDVSSLRRMILPKKAAEAFLPALESKEGIVISMDDIDGLHVWS 193

Query: 61  FKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           FK+RFWPNN  RMY+ ENT  F+  + L  GD IMVY+D    +Y
Sbjct: 194 FKYRFWPNNNSRMYVLENTGDFVNTHGLRFGDSIMVYQDSENNNY 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:2088439	313	FUS3 "FUSCA 3" [Arabidopsis th	1.0	0.335	0.514	5.7e-27
TAIR|locus:2032170	363	LEC2 "LEAFY COTYLEDON 2" [Arab	0.942	0.272	0.464	1.6e-22
TAIR|locus:2093166	720	ABI3 "AT3G24650" [Arabidopsis	0.942	0.137	0.494	3.1e-22
UNIPROTKB|A4LBC0	402	LFL1 "B3 domain-containing pro	0.876	0.228	0.484	2e-21
UNIPROTKB|Q7XKC5	433	LOC_Os04g58000 "B3 domain-cont	0.866	0.210	0.439	1.1e-20
UNIPROTKB|P37398	727	VP1 "B3 domain-containing prot	0.933	0.134	0.464	1.7e-20
UNIPROTKB|Q6Z1Z3	362	IDEF1 "B3 domain-containing pr	0.914	0.265	0.437	1.2e-19
TAIR|locus:2116592	780	HSL1 "HSI2-like 1" [Arabidopsi	0.885	0.119	0.436	7.8e-16
TAIR|locus:2064417	790	HSI2 "high-level expression of	0.8	0.106	0.435	1.7e-15
TAIR|locus:2039165	244	ABS2 "ABNORMAL SHOOT 2" [Arabi	0.866	0.372	0.31	7.2e-08

TAIR|locus:2088439 FUS3 "FUSCA 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 54/105 (51%), Positives = 77/105 (73%)

Query:     1 EINPFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWT 60
             +I+P  +RFLF+K+LKNSDV++  R++LPKK AE +LP +  K G  + +ED+D   VWT
Sbjct:    82 KIDPRKLRFLFQKELKNSDVSSLRRMILPKKAAEAHLPALECKEGIPIRMEDLDGFHVWT 141

Query:    61 FKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
             FK+R+WPNN  RMY+ ENT  F+  + L+LGD+IMVY+D    +Y
Sbjct:   142 FKYRYWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDLYSNNY 186

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010116 "positive regulation of abscisic acid biosynthetic process" evidence=IMP

GO:0010373 "negative regulation of gibberellin biosynthetic process" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

TAIR|locus:2032170 LEC2 "LEAFY COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 46/99 (46%), Positives = 70/99 (70%)

Query:     7 MRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFW 66
             +R L EK+LKNSDV + GRIVLPK+ AE  LP +++K G  + + D+   + W+FK++FW
Sbjct:   167 LRVLCEKELKNSDVGSLGRIVLPKRDAEANLPKLSDKEGIVVQMRDVFSMQSWSFKYKFW 226

Query:    67 PNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
              NN+ RMY+ ENT  F+K+   E+GD++ +Y+DE +  Y
Sbjct:   227 SNNKSRMYVLENTGEFVKQNGAEIGDFLTIYEDESKNLY 265

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010344 "seed oilbody biogenesis" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

GO:0010601 "positive regulation of auxin biosynthetic process" evidence=IMP

TAIR|locus:2093166 ABI3 "AT3G24650" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 3.1e-22, P = 3.1e-22
 Identities = 49/99 (49%), Positives = 68/99 (68%)

Query:     7 MRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFW 66
             +RFL +K LK SDV   GRIVLPKK AET+LP +  + G  + +ED+  ++VW  ++RFW
Sbjct:   568 LRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISLAMEDIGTSRVWNMRYRFW 627

Query:    67 PNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
             PNN+ RMY+ ENT  F+K   L+ GD+I++Y D   G Y
Sbjct:   628 PNNKSRMYLLENTGDFVKTNGLQEGDFIVIYSDVKCGKY 666

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=IEP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IDA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

UNIPROTKB|A4LBC0 LFL1 "B3 domain-containing protein LFL1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 253 (94.1 bits), Expect = 2.0e-21, P = 2.0e-21
 Identities = 47/97 (48%), Positives = 69/97 (71%)

Query:     7 MRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAG---FWMHLEDMDFNKVWTFKF 63
             +R + +K+L+ SDV+  GRIVLPKK AE YLP +  K G     MH  D+   ++WTFK+
Sbjct:   177 LRVILQKELRYSDVSQLGRIVLPKKEAEAYLPILTSKDGKKSLCMH--DLQNAQLWTFKY 234

Query:    64 RFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDE 100
             R+WPNN+ RMY+ ENT  +++ + L+LGD I++YKD+
Sbjct:   235 RYWPNNKSRMYVLENTGDYVRTHDLQLGDSIVIYKDD 271

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0048573 "photoperiodism, flowering" evidence=IMP

UNIPROTKB|Q7XKC5 LOC_Os04g58000 "B3 domain-containing protein Os04g0676600" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 248 (92.4 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 40/91 (43%), Positives = 62/91 (68%)

Query:     8 RFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWP 67
             R +  K+L NSDV   GRIV+PK+ AE +LP ++++ G  + ++D      W FK+RFWP
Sbjct:   294 RVILRKELTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDDFKLETTWNFKYRFWP 353

Query:    68 NNRGRMYIFENTRAFIKRYCLELGDYIMVYK 98
             NN+ RMY+ E+T  F+K++ L+ GD  ++YK
Sbjct:   354 NNKSRMYVLESTGGFVKQHVLQTGDIFIIYK 384

GO:0003677 "DNA binding" evidence=IDA

UNIPROTKB|P37398 VP1 "B3 domain-containing protein VP1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 252 (93.8 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 46/99 (46%), Positives = 68/99 (68%)

Query:     7 MRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFW 66
             +RFL +K LK SDV + GRIVLPK+ AE +LP +  + G  + +ED+  ++VW  ++RFW
Sbjct:   533 LRFLLQKVLKQSDVGSLGRIVLPKE-AEVHLPELKTRDGVSIPMEDIGTSQVWNMRYRFW 591

Query:    67 PNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
             PNN+ RMY+ ENT  F++   L+ GD+I++Y D   G Y
Sbjct:   592 PNNKSRMYLLENTGDFVRSNELQEGDFIVIYSDIKSGKY 630

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009790 "embryo development" evidence=IEP

UNIPROTKB|Q6Z1Z3 IDEF1 "B3 domain-containing protein IDEF1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 235 (87.8 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 42/96 (43%), Positives = 62/96 (64%)

Query:    10 LFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNN 69
             +  K+L  SDV   GRIVLPKK AE  LPP+ ++    +H++DM     W FK+R+WPNN
Sbjct:   252 ILRKELTKSDVGNVGRIVLPKKDAEASLPPLLQRDPLILHMDDMVLPVTWKFKYRYWPNN 311

Query:    70 RGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
             + RMYI ++   F+K + L+ GD I++YK+   G +
Sbjct:   312 KSRMYILDSAGEFLKTHGLQAGDVIIIYKNLAPGKF 347

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2116592 HSL1 "HSI2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 7.8e-16, P = 7.8e-16
 Identities = 41/94 (43%), Positives = 54/94 (57%)

Query:    10 LFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNN 69
             LFEK L  SD    GR+VLPK  AE Y PP++   G  + ++D+   K W F+FRFWPNN
Sbjct:   285 LFEKVLSASDAGRIGRLVLPKACAEAYFPPISLPEGLPLKIQDIK-GKEWVFQFRFWPNN 343

Query:    70 RGRMYIFENTRAFIKRYCLELGDYIMVYKDELEG 103
               RMY+ E     I+   L+ GD +   + E EG
Sbjct:   344 NSRMYVLEGVTPCIQSMQLQAGDTVTFSRTEPEG 377

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010030 "positive regulation of seed germination" evidence=IGI

GO:2000034 "regulation of seed maturation" evidence=IGI

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009790 "embryo development" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048316 "seed development" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2064417 HSI2 "high-level expression of sugar-inducible gene 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 37/85 (43%), Positives = 52/85 (61%)

Query:    10 LFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNN 69
             LFEK L  SD    GR+VLPK  AE Y PP+++  G  + ++D+   + WTF+FR+WPNN
Sbjct:   294 LFEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIPLKIQDVR-GREWTFQFRYWPNN 352

Query:    70 RGRMYIFENTRAFIKRYCLELGDYI 94
               RMY+ E     I+   L+ GD +
Sbjct:   353 NSRMYVLEGVTPCIQSMMLQAGDTV 377

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=TAS

GO:0009744 "response to sucrose stimulus" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IGI

GO:2000034 "regulation of seed maturation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2039165 ABS2 "ABNORMAL SHOOT 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 7.2e-08, P = 7.2e-08
 Identities = 31/100 (31%), Positives = 50/100 (50%)

Query:    10 LFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKA-----GFWMHLEDMDFNKVWTFKFR 64
             LFEK L  SDV    R+V+PK+ AE Y P     A     G  +  ED +  K W F++ 
Sbjct:    37 LFEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEE-GKPWRFRYS 95

Query:    65 FWPNNRGRMYIF-ENTRAFIKRYCLELGDYIMVYKDELEG 103
             +W  N  + Y+  +    ++K   L+ GD ++ ++   +G
Sbjct:    96 YW--NSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDG 133

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009062 "fatty acid catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	105
cd10017	98	cd10017, B3_DNA, Plant-specific B3-DNA binding dom	2e-16
cd10015	109	cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o	5e-15
pfam02362	97	pfam02362, B3, B3 DNA binding domain	4e-11
smart01019	96	smart01019, B3, B3 DNA binding domain	8e-07

>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain

 Score = 68.1 bits (167), Expect = 2e-16
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 5/97 (5%)

Query: 9   FLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPN 68
            LF K L  SDV++ GR+VLPKK A+ +LPP        + LED D  K WT K +   N
Sbjct: 1   PLFFKVLTPSDVSSLGRLVLPKKFAKAHLPPKEGV---EVTLEDPD-GKKWTVKLKKRKN 56

Query: 69  NRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
           + GRM +    + F++   L+ GD+++   D     +
Sbjct: 57  S-GRMVLSGGWKEFVRANGLKEGDFLVFELDGRNSKF 92

The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98

>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins

 Score = 64.6 bits (157), Expect = 5e-15
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 9  FLFEKQLKNSDVNAAG----RIVLPKKLAETYLPPVNEKA----GFWMHLEDMDFNKVWT 60
           +  K+L  +D  A G     + +PK + E + P +N         ++ + D+   + W 
Sbjct: 1  VVLIKRLSANDTGATGGHQVGLYIPKGIVEKFPPSINHTREANPSIFLTMHDISDCRDWE 60

Query: 61 FKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKD 99
           +  F+ +NR    +    R F+K+  L  GD  ++  D
Sbjct: 61 ARAIFYNSNRNEKRLTRGGRGFVKQNPLNTGDLTLIAFD 99

This family contains the N-terminal DNA binding domain of type IIE restriction endonuclease EcoRII-like proteins, the C-terminal DNA binding domain of type IIS restriction endonuclease BfiI-like proteins and plant-specific B3 proteins. Type II restriction endonucleases are components of restriction modification (RM) systems that protect bacteria and archaea against invading foreign DNA. They usually function as homodimers or homotetramers that cleave DNA at defined sites of 4 to 8 bp in length, and they require Mg2+, not ATP or GTP, for catalysis. EcoRII is specific for the 5'-CCWGG sequence (W stands for A or T). EcoRII consists of 2 domains, the C-terminal catalytic/dimerization domain (EcoRII-C), and the N-terminal effector DNA binding domain (EcoRII-N). BfiI is unique in cleaving DNA at fixed positions downstream of an asymmetric sequence in the absence of Mg2+. BfiI consists of two discrete domains with distinct functions: an N-terminal catalytic domain with non-specific nuclease activity and dimerization function that is more closely related to Nuc, an EDTA-resistant nuclease from the phospholipase D (PLD) superfamily; and a C-terminal domain that specifically recognizes its target sequences, 5'-ACTGGG-3'. B3 proteins are a family of plant-specific transcription factors, involved in a great variety of processes, including seed development and auxin response. Length = 109

>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain

 Score = 54.3 bits (131), Expect = 4e-11
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 11  FEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNR 70
           F K L  SDV+  GR+VLPKK AE        +    + L D D  K WT K R+     
Sbjct: 1   FVKVLTPSDVSKDGRLVLPKKFAEENGLNKKGQE---ITLLDPD-GKSWTVKLRYR--KS 54

Query: 71  GRMYIFEN-TRAFIKRYCLELGDYIMVYKDE 100
           GR Y+  +  + F+K   L+ GD ++   D 
Sbjct: 55  GRRYLLTSGWKEFVKANGLKAGDSLVFKLDG 85

This is a family of plant transcription factors with various roles in development, the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by. Length = 97

>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain

 Score = 43.1 bits (102), Expect = 8e-07
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 11 FEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNR 70
          F K L  SDV+  GR+VLPK+ AE+  PP+  K    + L D D  K W  K ++   + 
Sbjct: 1  FFKTLTTSDVSKHGRLVLPKQFAESNGPPLKPKE---ITLLDPD-GKSWKVKLKYR-GSS 55

Query: 71 GRMYIFENTRAFIKRYCLELGDYI 94
          G   +    + F+K   L+ GD +
Sbjct: 56 GMFLLTGGWKEFVKANGLKAGDSL 79

Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
PF02362	100	B3: B3 DNA binding domain; InterPro: IPR003340 Two	99.84
PF03754	114	DUF313: Domain of unknown function (DUF313) ; Inte	99.08
PF09217	156	EcoRII-N: Restriction endonuclease EcoRII, N-termi	98.58
cd06919	111	Asp_decarbox Aspartate alpha-decarboxylase or L-as	93.89
PRK05449	126	aspartate alpha-decarboxylase; Provisional	93.89
TIGR00223	126	panD L-aspartate-alpha-decarboxylase. Members of t	93.64
PF02261	116	Asp_decarbox: Aspartate decarboxylase; InterPro: I	92.66
PF10844	100	DUF2577: Protein of unknown function (DUF2577); In	92.52
PF14250	71	AbrB-like: AbrB-like transcriptional regulator	81.46

>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species

Probab=99.84  E-value=5.8e-20  Score=118.68  Aligned_cols=86  Identities=24%  Similarity=0.367  Sum_probs=63.7

Q ss_pred             EEEecccCCCCCCCcEEeehhhhhccCCCCCCCCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeec-ChHHHHhhcCCC
Q 043432           11 FEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFE-NTRAFIKRYCLE   89 (105)
Q Consensus        11 f~K~LT~SDv~~~~rl~iPk~~ae~~lP~l~~~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~-gW~~fV~~k~L~   89 (105)
                      |.|+|++||+.+.++|.||++.++++  .+....++.+.+.|. .|++|.++++++.  .++.++|+ ||.+||++++|+
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~--~~~~~~~~~v~l~~~-~g~~W~v~~~~~~--~~~~~~l~~GW~~Fv~~n~L~   75 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKH--GGNKRKSREVTLKDP-DGRSWPVKLKYRK--NSGRYYLTGGWKKFVRDNGLK   75 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTT--S--SS--CEEEEEET-TTEEEEEEEEEEC--CTTEEEEETTHHHHHHHCT--
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHh--CCCcCCCeEEEEEeC-CCCEEEEEEEEEc--cCCeEEECCCHHHHHHHcCCC
Confidence            78999999999888999999999888  222235689999998 5999999999874  44457888 799999999999


Q ss_pred             CCCEEEEEEcCC
Q 043432           90 LGDYIMVYKDEL  101 (105)
Q Consensus        90 ~GD~i~f~~~~~  101 (105)
                      +||.|+|+....
T Consensus        76 ~GD~~~F~~~~~   87 (100)
T PF02362_consen   76 EGDVCVFELIGN   87 (100)
T ss_dssp             TT-EEEEEE-SS
T ss_pred             CCCEEEEEEecC
Confidence            999999998753

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.

>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function

Probab=99.08  E-value=4.9e-10  Score=75.55  Aligned_cols=78  Identities=22%  Similarity=0.434  Sum_probs=62.7

Q ss_pred             ccceeEEEecccCCCC-CCCcEEeehhhhh--ccCCC-----C-------CCCCCEEEEEEECCCCeEEEEEEEEcCC-C
Q 043432            6 LMRFLFEKQLKNSDVN-AAGRIVLPKKLAE--TYLPP-----V-------NEKAGFWMHLEDMDFNKVWTFKFRFWPN-N   69 (105)
Q Consensus         6 ~~~~~f~K~LT~SDv~-~~~rl~iPk~~ae--~~lP~-----l-------~~~~~~~l~~~D~~~g~~W~fr~~~~~~-~   69 (105)
                      ....++.|+|++|||. ..+||.||-....  .+|-+     +       ....|+.+.+.|+. ++.|.++++.|.. +
T Consensus        19 d~kli~~K~L~~tDv~~~qsRLsmP~~qi~~~dFLt~eE~~~i~~~~~~~~~~~Gv~V~lvdp~-~~~~~m~lkkW~mg~   97 (114)
T PF03754_consen   19 DPKLIIEKTLFKTDVDPHQSRLSMPFNQIIDNDFLTEEEKRIIKEEKKNNDKKKGVEVILVDPS-LRKWTMRLKKWNMGN   97 (114)
T ss_pred             CCeEEEeeeecccCCCCCCceeeccHHHhcccccCCHHHHHHHHHhhccCcccCCceEEEECCc-CcEEEEEEEEecccC
Confidence            4578999999999999 5899999976653  23322     2       23578999999995 8999999999987 4


Q ss_pred             CCcceeec-ChHHHHh
Q 043432           70 RGRMYIFE-NTRAFIK   84 (105)
Q Consensus        70 ~s~~y~l~-gW~~fV~   84 (105)
                      .+-.|+|. ||.++|.
T Consensus        98 ~~~~YvL~~gWn~VV~  113 (114)
T PF03754_consen   98 GTSNYVLNSGWNKVVE  113 (114)
T ss_pred             CceEEEEEcChHhhcc
Confidence            55679999 8999886

>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV

Probab=98.58  E-value=2.7e-07  Score=64.95  Aligned_cols=88  Identities=19%  Similarity=0.320  Sum_probs=55.3

Q ss_pred             eeEEEecccCCCCC----CCcEEeehhhhhccCCCCC----CCCCEEEEEEECCCC--eEEEEEEEEcCC----CCCcce
Q 043432            9 FLFEKQLKNSDVNA----AGRIVLPKKLAETYLPPVN----EKAGFWMHLEDMDFN--KVWTFKFRFWPN----NRGRMY   74 (105)
Q Consensus         9 ~~f~K~LT~SDv~~----~~rl~iPk~~ae~~lP~l~----~~~~~~l~~~D~~~g--~~W~fr~~~~~~----~~s~~y   74 (105)
                      .+|.|.|++.|++.    ..++.|||..++.+||.+.    .++.+.|.+.+.. +  ..+.+|++|..|    +.+..|
T Consensus         8 ~~~~K~LSaNDtGaTGgHQaGiyIpk~~~~~lFp~~~~~~~~Np~~~~~~~~~s-~~~~~~~~r~iYYnn~~~~gTRNE~   86 (156)
T PF09217_consen    8 AIYCKRLSANDTGATGGHQAGIYIPKSAAELLFPSINHTKEENPDIWLKARWQS-HFVTDSQVRFIYYNNRLFGGTRNEY   86 (156)
T ss_dssp             EEEEEE--CCCCTTTSSS--EEEE-HHHHHHH-GGG-SSSSSS-EEEEEEEETT-TT---EEEEEEEE-CCCTTSS--EE
T ss_pred             EEEEEEccCCCCCCcCcccceeEecccHHHHhCCCCCcccccCCceeEEEEECC-CCccceeEEEEEEcccccCCCcCce
Confidence            57999999999984    4489999999988998764    2466888888773 4  668899999966    345679


Q ss_pred             eecChHHHHhhcC-CCCCCEEEEE
Q 043432           75 IFENTRAFIKRYC-LELGDYIMVY   97 (105)
Q Consensus        75 ~l~gW~~fV~~k~-L~~GD~i~f~   97 (105)
                      .||.|.....-.+ =.+||.++|.
T Consensus        87 RIT~~G~~~~~~~~~~tGaL~vla  110 (156)
T PF09217_consen   87 RITRFGRGFPLQNPENTGALLVLA  110 (156)
T ss_dssp             EEE---TTSGGG-GGGTT-EEEEE
T ss_pred             EEeeecCCCccCCccccccEEEEE
Confidence            9999865554333 3679998886

All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the N-terminal effector-binding domain of the type II restriction endonuclease EcoRII, which has a DNA recognition fold, allowing for binding to 5'-CCWGG sequences. It assumes a structure composed of an eight-stranded beta-sheet with the strands in the order of b2, b5, b4, b3, b7, b6, b1 and b8. They are mostly antiparallel to each other except that b3 is parallel to b7. Alternatively, it may also be viewed as consisting of two mini beta-sheets of four antiparallel beta-strands, sheet I from beta-strands b2, b5, b4, b3 and sheet II from strands b7, b6, b1, b8, folded into an open mixed beta-barrel with a novel topology. Sheet I has a simple Greek key motif while sheet II does not []. The domain represented by this entry is only found in bacterial proteins.; PDB: 3HQF_A 1NA6_A.

>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production

Probab=93.89  E-value=1.2  Score=29.95  Aligned_cols=77  Identities=13%  Similarity=0.198  Sum_probs=58.0

Q ss_pred             EEEecccCCCCCCCcEEeehhhhhc--cCCCCCCCCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeecChHHHHhhcCC
Q 043432           11 FEKQLKNSDVNAAGRIVLPKKLAET--YLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCL   88 (105)
Q Consensus        11 f~K~LT~SDv~~~~rl~iPk~~ae~--~lP~l~~~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~gW~~fV~~k~L   88 (105)
                      =.-..|..|+..-|.+.|..+..++  ++|.      ..|.+++..+|..|+ .|.+.....|+.-.|.|    .-++..
T Consensus        10 HratVT~a~L~YeGSitID~~Ll~aagi~~~------E~V~I~Nv~NG~Rf~-TYvI~g~~gSg~I~lNG----AAAr~~   78 (111)
T cd06919          10 HRATVTEADLNYEGSITIDEDLLEAAGILPY------EKVLVVNVNNGARFE-TYVIPGERGSGVICLNG----AAARLG   78 (111)
T ss_pred             cceEEeccccccceeEEECHHHHHhcCCCCC------CEEEEEECCCCcEEE-EEEEEcCCCCCEEEeCC----HHHhcC
Confidence            3456899999988999999988765  3554      478999987787665 45566445577778888    567788


Q ss_pred             CCCCEEEEEE
Q 043432           89 ELGDYIMVYK   98 (105)
Q Consensus        89 ~~GD~i~f~~   98 (105)
                      ++||.|++.-
T Consensus        79 ~~GD~vII~s   88 (111)
T cd06919          79 QPGDRVIIMA   88 (111)
T ss_pred             CCCCEEEEEE
Confidence            9999999853

Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment

>PRK05449 aspartate alpha-decarboxylase; Provisional

Probab=93.89  E-value=1.1  Score=30.74  Aligned_cols=76  Identities=11%  Similarity=0.239  Sum_probs=57.8

Q ss_pred             EEecccCCCCCCCcEEeehhhhhc--cCCCCCCCCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeecChHHHHhhcCCC
Q 043432           12 EKQLKNSDVNAAGRIVLPKKLAET--YLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCLE   89 (105)
Q Consensus        12 ~K~LT~SDv~~~~rl~iPk~~ae~--~lP~l~~~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~gW~~fV~~k~L~   89 (105)
                      .-..|..|+..-|.+.|..+..++  ++|.      -.|.+++..+|..|+ .|.+.....|+.-.|.|    .-++..+
T Consensus        12 ratVT~a~L~Y~GSitID~~Ll~aagi~p~------E~V~V~Nv~NG~Rf~-TYvI~g~~GSg~I~lNG----AAAr~~~   80 (126)
T PRK05449         12 RATVTEADLNYEGSITIDEDLLDAAGILEN------EKVQIVNVNNGARFE-TYVIAGERGSGVICLNG----AAARLVQ   80 (126)
T ss_pred             ceEEeccccccceeEEECHHHHHhcCCCCC------CEEEEEECCCCcEEE-EEEEEcCCCCCEEEeCC----HHHhcCC
Confidence            456899999988999999998875  4554      378999987788665 45566445577778888    5678889


Q ss_pred             CCCEEEEEE
Q 043432           90 LGDYIMVYK   98 (105)
Q Consensus        90 ~GD~i~f~~   98 (105)
                      +||.|++.-
T Consensus        81 ~GD~vII~a   89 (126)
T PRK05449         81 VGDLVIIAA   89 (126)
T ss_pred             CCCEEEEEE
Confidence            999999853

>TIGR00223 panD L-aspartate-alpha-decarboxylase

Probab=93.64  E-value=1.2  Score=30.50  Aligned_cols=76  Identities=13%  Similarity=0.325  Sum_probs=57.7

Q ss_pred             EEecccCCCCCCCcEEeehhhhhc--cCCCCCCCCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeecChHHHHhhcCCC
Q 043432           12 EKQLKNSDVNAAGRIVLPKKLAET--YLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCLE   89 (105)
Q Consensus        12 ~K~LT~SDv~~~~rl~iPk~~ae~--~lP~l~~~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~gW~~fV~~k~L~   89 (105)
                      ....|..|+..-|.+.|..+..++  ++|.      -.|.+.|..+|..|+ .|.+.....|+.-.|.|    .-++..+
T Consensus        12 ratVT~a~L~Y~GSItID~~Lm~aagi~p~------E~V~V~Nv~NG~Rf~-TYvI~G~~GSg~I~lNG----AAArl~~   80 (126)
T TIGR00223        12 RATVTHANLNYEGSITIDEDLLDAAGILEN------EKVDIVNVNNGKRFS-TYAIAGKRGSRIICVNG----AAARCVS   80 (126)
T ss_pred             ceEEeccccccceeEEECHHHHHhcCCCCC------CEEEEEECCCCcEEE-EEEEEcCCCCCEEEeCC----HHHhcCC
Confidence            456789999988999999988764  4554      378899987788665 45566545577778888    5677889


Q ss_pred             CCCEEEEEE
Q 043432           90 LGDYIMVYK   98 (105)
Q Consensus        90 ~GD~i~f~~   98 (105)
                      +||.|++.-
T Consensus        81 ~GD~VII~s   89 (126)
T TIGR00223        81 VGDIVIIAS   89 (126)
T ss_pred             CCCEEEEEE
Confidence            999999853

Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.

>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase

Probab=92.66  E-value=2.2  Score=28.92  Aligned_cols=77  Identities=12%  Similarity=0.276  Sum_probs=50.5

Q ss_pred             eEEEecccCCCCCCCcEEeehhhhhc--cCCCCCCCCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeecChHHHHhhcC
Q 043432           10 LFEKQLKNSDVNAAGRIVLPKKLAET--YLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYC   87 (105)
Q Consensus        10 ~f~K~LT~SDv~~~~rl~iPk~~ae~--~lP~l~~~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~gW~~fV~~k~   87 (105)
                      +=..+.|..|+...|.+.|..+..++  ++|.      -.|.+.+..+|..|+ .|.+.....|+.-.|.|    .-++.
T Consensus        10 iHratVT~a~L~Y~GSitID~~Ll~aagi~p~------E~V~V~Nv~nG~Rf~-TYvI~g~~GSg~I~lNG----aAArl   78 (116)
T PF02261_consen   10 IHRATVTEADLNYEGSITIDEDLLDAAGILPY------EQVQVVNVNNGERFE-TYVIPGERGSGVICLNG----AAARL   78 (116)
T ss_dssp             EEEEE--EEETTSTSCEEEEHHHHHHCT--TT------BEEEEEETTT--EEE-EEEEEESTTTT-EEEEG----GGGGC
T ss_pred             hcceEEeccccccceeeEECHHHHHHcCCCcC------CEEEEEECCCCcEEE-EEEEEccCCCcEEEECC----HHHhc
Confidence            33457899999988999999988764  4554      478999988788665 34455444566777777    56788


Q ss_pred             CCCCCEEEEE
Q 043432           88 LELGDYIMVY   97 (105)
Q Consensus        88 L~~GD~i~f~   97 (105)
                      .++||.|++.
T Consensus        79 ~~~GD~vII~   88 (116)
T PF02261_consen   79 VQVGDRVIIM   88 (116)
T ss_dssp             S-TT-EEEEE
T ss_pred             cCCCCEEEEE
Confidence            8999999884

The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....

>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function

Probab=92.52  E-value=0.32  Score=31.72  Aligned_cols=75  Identities=12%  Similarity=0.191  Sum_probs=45.4

Q ss_pred             ceeEEEecccCCCC-C-CCcEEeehhhhhccCCCCCCCCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeecChHHHHhh
Q 043432            8 RFLFEKQLKNSDVN-A-AGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKR   85 (105)
Q Consensus         8 ~~~f~K~LT~SDv~-~-~~rl~iPk~~ae~~lP~l~~~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~gW~~fV~~   85 (105)
                      ...|.++++.+-+. + .+++.||++..  ++|..-......+.+.... ...          +.          .+.-.
T Consensus        18 ~i~~G~V~s~~PL~I~i~~~liL~~~~L--~i~~~l~~~~~~~~~~~~~-~~~----------~~----------~i~~~   74 (100)
T PF10844_consen   18 DIVIGTVVSVPPLKIKIDQKLILDKDFL--IIPELLKDYTRDITIEHNS-ETD----------NI----------TITFT   74 (100)
T ss_pred             eeEEEEEEecccEEEEECCeEEEchHHE--EeehhccceEEEEEEeccc-ccc----------ce----------eEEEe
Confidence            34788999998754 2 34588887654  4555323333444443321 110          00          05556


Q ss_pred             cCCCCCCEEEEEEcCCCCCC
Q 043432           86 YCLELGDYIMVYKDELEGSY  105 (105)
Q Consensus        86 k~L~~GD~i~f~~~~~~g~~  105 (105)
                      .+|++||.|.+.+..++.+|
T Consensus        75 ~~Lk~GD~V~ll~~~~gQ~y   94 (100)
T PF10844_consen   75 DGLKVGDKVLLLRVQGGQKY   94 (100)
T ss_pred             cCCcCCCEEEEEEecCCCEE
Confidence            78999999999997777665

>PF14250 AbrB-like: AbrB-like transcriptional regulator

Probab=81.46  E-value=4.6  Score=25.05  Aligned_cols=39  Identities=15%  Similarity=0.217  Sum_probs=30.7

Q ss_pred             CCeEEEEEEEEcCCCCCcceeecChHHHHhhcCCCCCCEEEEEE
Q 043432           55 FNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYK   98 (105)
Q Consensus        55 ~g~~W~fr~~~~~~~~s~~y~l~gW~~fV~~k~L~~GD~i~f~~   98 (105)
                      .|++=+||.+...|++    +|-| ..|-+..+|++||++.+--
T Consensus        25 ~GR~~syr~~Vq~NGn----LLIG-~AYT~~m~L~PGdEFeI~L   63 (71)
T PF14250_consen   25 RGRKASYRVSVQGNGN----LLIG-SAYTKQMGLKPGDEFEIKL   63 (71)
T ss_pred             CCcCceEEEEEecCCC----EEEc-HHHHHHhCCCCCCEEEEEe
Confidence            5888889988886544    4555 6899999999999987743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	105
1wid_A	130	Solution Structure Of The B3 Dna-Binding Domain Of		3e-06

>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 10 LFEKQLKNSDVNAAGRIVLPKKLAETYLP-PVNEKA--GFWMHLEDMDFNKVWTFKFRFW 66
          LFEK +  SDV    R+V+PK  AE + P P +  +  G  ++ ED++  KVW F++ +W
Sbjct: 13 LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVN-GKVWRFRYSYW 71
Query: 67 PNNRGRMYIFENT-RAFIKRYCLELGDYI 94
            N  + Y+       F+K   L  GD +
Sbjct: 72 --NSSQSYVLTKGWSRFVKEKNLRAGDVV 98
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	7e-18

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130

 Score = 72.1 bits (176), Expect = 7e-18
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 7   MRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPV---NEKAGFWMHLEDMDFNKVWTFKF 63
              LFEK +  SDV    R+V+PK  AE + P         G  ++ ED++  KVW F++
Sbjct: 10  AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVN-GKVWRFRY 68

Query: 64  RFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGSY 105
            +W +++  + + +    F+K   L  GD +   +   +   
Sbjct: 69  SYWNSSQSYV-LTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQ 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	99.98
4i1k_A	146	B3 domain-containing transcription factor VRN1; B3	99.79
1yel_A	104	AT1G16640; CESG, protein structure initiative, str	99.7
1na6_A	404	Ecorii, restriction endonuclease ecorii; site-spec	96.19
1pqh_A	143	Aspartate 1-decarboxylase; pyruvoyl dependent deca	92.43
3oug_A	114	Aspartate 1-decarboxylase; structural genomics, ce	91.5
2c45_A	139	Aspartate 1-decarboxylase precursor; double-PSI be	91.33

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.98  E-value=8.6e-32  Score=183.39  Aligned_cols=97  Identities=30%  Similarity=0.574  Sum_probs=87.4

Q ss_pred             ccccceeEEEecccCCCCCCCcEEeehhhhhccCCCCCC---CCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeec-Ch
Q 043432            4 PFLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNE---KAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFE-NT   79 (105)
Q Consensus         4 ~~~~~~~f~K~LT~SDv~~~~rl~iPk~~ae~~lP~l~~---~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~-gW   79 (105)
                      .+.+.++|+|+||+|||++.+||+||+++|++|||.++.   .+++.|.++|.+ |++|+|+|+||  +++++|+|+ ||
T Consensus         7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~-Gk~W~fr~~~~--~~~~~~~Lt~GW   83 (130)
T 1wid_A            7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVN-GKVWRFRYSYW--NSSQSYVLTKGW   83 (130)
T ss_dssp             -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETT-TEEEEEEEEEE--TTTTEEEEESSH
T ss_pred             CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCC-CCEEEEEEEEE--CCCCceEEcCCh
Confidence            356788999999999999889999999999999999874   578999999995 99999999999  667889998 69


Q ss_pred             HHHHhhcCCCCCCEEEEEEcCCCC
Q 043432           80 RAFIKRYCLELGDYIMVYKDELEG  103 (105)
Q Consensus        80 ~~fV~~k~L~~GD~i~f~~~~~~g  103 (105)
                      ..||++|+|++||+|+|+++.+++
T Consensus        84 ~~FV~~~~L~~GD~~~F~~~~~~~  107 (130)
T 1wid_A           84 SRFVKEKNLRAGDVVSFSRSNGQD  107 (130)
T ss_dssp             HHHHHHTTCCTTCEEEEEECCSSS
T ss_pred             HHHHHHcCCCCCCEEEEEEecCCC
Confidence            999999999999999999987554

>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}

Probab=99.79  E-value=1.1e-18  Score=120.67  Aligned_cols=84  Identities=19%  Similarity=0.223  Sum_probs=72.4

Q ss_pred             ceeEEEecccCCCCCCCcEEeehhhhhccCCCCCCCCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeec-ChHHHHhhc
Q 043432            8 RFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFE-NTRAFIKRY   86 (105)
Q Consensus         8 ~~~f~K~LT~SDv~~~~rl~iPk~~ae~~lP~l~~~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~-gW~~fV~~k   86 (105)
                      .+.|.|+||+||+....+|.||++.|+.+||...    ..+.+.|.  |+.|.+++.++.  .  .+.|+ ||..||+++
T Consensus        46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~----~~i~L~~~--gk~W~v~~~~~~--~--~~~ls~GW~~Fv~dn  115 (146)
T 4i1k_A           46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS----GFIKVQLA--EKQWPVRCLYKA--G--RAKFSQGWYEFTLEN  115 (146)
T ss_dssp             SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC----SEEEEEET--TEEEEEEEEEET--T--EEEECTTHHHHHHHT
T ss_pred             CCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC----eEEEEEEC--CcEEEEEEEEeC--C--cEEECCchHHHHHHc
Confidence            4689999999999876789999999999999764    57888898  499999999983  2  36777 799999999


Q ss_pred             CCCCCCEEEEEEcCC
Q 043432           87 CLELGDYIMVYKDEL  101 (105)
Q Consensus        87 ~L~~GD~i~f~~~~~  101 (105)
                      +|++||+|+|.....
T Consensus       116 ~L~~GD~cvFeli~~  130 (146)
T 4i1k_A          116 NLGEGDVCVFELLRT  130 (146)
T ss_dssp             TCCTTCEEEEEECSS
T ss_pred             CCCCCCEEEEEEecC
Confidence            999999999988654

>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.70  E-value=1.1e-16  Score=104.43  Aligned_cols=82  Identities=20%  Similarity=0.337  Sum_probs=67.6

Q ss_pred             ceeEEEecccCCCCCCCcEEeehhhhhccCCCCCCCCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeec-ChHHHHhhc
Q 043432            8 RFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFE-NTRAFIKRY   86 (105)
Q Consensus         8 ~~~f~K~LT~SDv~~~~rl~iPk~~ae~~lP~l~~~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~-gW~~fV~~k   86 (105)
                      .+.|-|+|+++|..  .+|.||++.++.+.|.+.    ..+.++|. .|+.|.++++++  ++  .++|+ ||.+||+++
T Consensus         8 ~p~F~K~l~~~~~~--~~L~IP~~F~~~~~~~~~----~~v~L~~~-~G~~W~v~~~~~--~~--~~~l~~GW~~Fv~~~   76 (104)
T 1yel_A            8 EVQFMKPFISEKSS--KSLEIPLGFNEYFPAPFP----ITVDLLDY-SGRSWTVRMKKR--GE--KVFLTVGWENFVKDN   76 (104)
T ss_dssp             CEEEEEECCHHHHT--TCEECCHHHHTTCCCCCC----SEEEEEET-TSCEEEEEEEEE--TT--EEEECTTHHHHHHHH
T ss_pred             CCCEEEEECCCCcc--ceEECCHHHHHhcCccCC----CEEEEECC-CCCEEEEEEEEE--CC--cEEEccChHHHHHHc
Confidence            35899999999843  799999999977655432    57889999 499999999987  22  36777 799999999


Q ss_pred             CCCCCCEEEEEEcC
Q 043432           87 CLELGDYIMVYKDE  100 (105)
Q Consensus        87 ~L~~GD~i~f~~~~  100 (105)
                      +|++||.|+|....
T Consensus        77 ~L~~GD~lvF~~~~   90 (104)
T 1yel_A           77 NLEDGKYLQFIYDR   90 (104)
T ss_dssp             TCCTTCEEEEEECS
T ss_pred             CCCCCCEEEEEEcC
Confidence            99999999998754

>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A

Probab=96.19  E-value=0.0086  Score=47.00  Aligned_cols=91  Identities=14%  Similarity=0.200  Sum_probs=64.7

Q ss_pred             ceeEEEecccCCCCC----CCcEEeehhhhhccCCCCC---C-CCCEEEEE--EECCCCeEEEEEEEEcCC----CCCcc
Q 043432            8 RFLFEKQLKNSDVNA----AGRIVLPKKLAETYLPPVN---E-KAGFWMHL--EDMDFNKVWTFKFRFWPN----NRGRM   73 (105)
Q Consensus         8 ~~~f~K~LT~SDv~~----~~rl~iPk~~ae~~lP~l~---~-~~~~~l~~--~D~~~g~~W~fr~~~~~~----~~s~~   73 (105)
                      ...+.|.|++.|++.    ...+.+|+.-++.+||.+.   . ++.+.+.+  -|.+.. ....+++|..|    +.+..
T Consensus        18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p-~td~~~twYn~R~~~~tRnE   96 (404)
T 1na6_A           18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCP-DSEARAIYYNSAHFGKTRNE   96 (404)
T ss_dssp             EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCC-CEEEEEEEECGGGTTSCCCE
T ss_pred             chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCc-eEEEEEEEecccccCCCCCc
Confidence            468999999999984    4589999976788998875   2 23344443  345433 44999999842    12345


Q ss_pred             eeecCh-HHHHhhcCCCCCCEEEEEEc
Q 043432           74 YIFENT-RAFIKRYCLELGDYIMVYKD   99 (105)
Q Consensus        74 y~l~gW-~~fV~~k~L~~GD~i~f~~~   99 (105)
                      |.|+.| ..+.=.+...+||.++|-+.
T Consensus        97 yRLt~~~~~~~~~~~a~~GDLlvia~~  123 (404)
T 1na6_A           97 KRITRWGRGSPLQDPENTGALTLLAFK  123 (404)
T ss_dssp             EEEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred             eEEeecCCCCcccccCCCCCEEEEEEe
Confidence            899977 55566678899999999775

>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A

Probab=92.43  E-value=1.7  Score=29.44  Aligned_cols=75  Identities=11%  Similarity=0.273  Sum_probs=56.4

Q ss_pred             EEecccCCCCCCCcEEeehhhhhc--cCCCCCCCCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeecChHHHHhhcCCC
Q 043432           12 EKQLKNSDVNAAGRIVLPKKLAET--YLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCLE   89 (105)
Q Consensus        12 ~K~LT~SDv~~~~rl~iPk~~ae~--~lP~l~~~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~gW~~fV~~k~L~   89 (105)
                      .-+.|+.|+..-|.+.|..+..++  ++|.      -.|.++|..+|..++ .|.+.....|+.-.|.|    .-++..+
T Consensus        29 RatVT~AdL~Y~GSITID~dLldaAgIl~~------EkV~IvNvnNG~Rfe-TYvI~GerGSG~I~lNG----AAArl~~   97 (143)
T 1pqh_A           29 RVKVTHADLHYEGTCAIDQDFLDAAGILEN------EAIDIWNVTNGKRFS-TYAIAAERGSRIISVNG----AAAHCAS   97 (143)
T ss_dssp             EEECCBCCSSSCCCEEEEHHHHHHHTCCTT------CEEEEEETTTCCEEE-EEEEEECTTCCCEECCG----GGGGTCC
T ss_pred             ceEEeccccccceeEEECHHHHHHcCCCCC------CEEEEEECCCCceEE-EEEEEccCCCceEEech----HHHccCC
Confidence            346799999988999999988764  4554      478999987787554 44555445567777777    5678889


Q ss_pred             CCCEEEEE
Q 043432           90 LGDYIMVY   97 (105)
Q Consensus        90 ~GD~i~f~   97 (105)
                      +||.|++.
T Consensus        98 ~GD~VII~  105 (143)
T 1pqh_A           98 VGDIVIIA  105 (143)
T ss_dssp             TTCEEEEE
T ss_pred             CCCEEEEE
Confidence            99999884

>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0

Probab=91.50  E-value=1.9  Score=28.12  Aligned_cols=75  Identities=8%  Similarity=0.153  Sum_probs=55.6

Q ss_pred             EEecccCCCCCCCcEEeehhhhhc--cCCCCCCCCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeecChHHHHhhcCCC
Q 043432           12 EKQLKNSDVNAAGRIVLPKKLAET--YLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCLE   89 (105)
Q Consensus        12 ~K~LT~SDv~~~~rl~iPk~~ae~--~lP~l~~~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~gW~~fV~~k~L~   89 (105)
                      ..+.|+.|+..-|.+.|..+..++  ++|.      -.|.+.+..+|..++ .|.+.....|+.-.|.|    .-++..+
T Consensus        15 ratVT~a~L~Y~GSitID~~Ll~aA~i~~~------E~V~I~NvnNG~Rf~-TYvI~GerGSg~I~lNG----AAAr~~~   83 (114)
T 3oug_A           15 YATVTGKDLFYVGSITIDSEIMKQANIIEN------EKVQVVNLNNGERLE-TYVIKGEPNSKTIALNG----PAARRCE   83 (114)
T ss_dssp             EEECCEEESSCC-CEEEEHHHHHHTTCCTT------BEEEEEETTTCCEEE-EEEEEECTTSCCEEEEG----GGGGGCC
T ss_pred             ceEEecccccccceEEECHHHHHHcCCCcC------CEEEEEECCCCceEE-EEEEEccCCCCEEEeCC----HHHhccC
Confidence            456799999988999999988764  4554      478999987787655 34555445567777777    5678889


Q ss_pred             CCCEEEEE
Q 043432           90 LGDYIMVY   97 (105)
Q Consensus        90 ~GD~i~f~   97 (105)
                      +||.|++.
T Consensus        84 ~GD~vII~   91 (114)
T 3oug_A           84 IGDQLFII   91 (114)
T ss_dssp             TTCEEEEE
T ss_pred             CCCEEEEE
Confidence            99999985

>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}

Probab=91.33  E-value=2.3  Score=28.72  Aligned_cols=78  Identities=10%  Similarity=0.170  Sum_probs=58.1

Q ss_pred             eeEEEecccCCCCCCCcEEeehhhhhc--cCCCCCCCCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeecChHHHHhhc
Q 043432            9 FLFEKQLKNSDVNAAGRIVLPKKLAET--YLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRY   86 (105)
Q Consensus         9 ~~f~K~LT~SDv~~~~rl~iPk~~ae~--~lP~l~~~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~gW~~fV~~k   86 (105)
                      .+=.-+.|+.|+..-|.+.|..+..++  ++|.      -.|.+.|..+|..++ .|.+.....|+.-.|.|    .-++
T Consensus         9 KIHRatVT~AdL~Y~GSITID~dLldaAgIl~~------EkV~IvNvnNG~Rfe-TYvI~GerGSG~I~lNG----AAAr   77 (139)
T 2c45_A            9 KIHRATVTCADLHYVGSVTIDADLMDAADLLEG------EQVTIVDIDNGARLV-TYAITGERGSGVIGING----AAAH   77 (139)
T ss_dssp             EEEEEECCCEESSSCCEEEEEHHHHHHTTCCSS------CCEEEEETTTCCEEE-ECEEEECTTTTCEEEES----STTT
T ss_pred             cccceEEeccccccceeeEECHHHHHHcCCCCC------CEEEEEECCCCceEE-EEEEEccCCCCEEEEch----HHHc
Confidence            345567899999988999999988764  4554      467899987777554 34555445567777777    5678


Q ss_pred             CCCCCCEEEEE
Q 043432           87 CLELGDYIMVY   97 (105)
Q Consensus        87 ~L~~GD~i~f~   97 (105)
                      ..++||.|++.
T Consensus        78 l~~~GD~vII~   88 (139)
T 2c45_A           78 LVHPGDLVILI   88 (139)
T ss_dssp             TSCTTCEEEEE
T ss_pred             cCCCCCEEEEE
Confidence            88999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d1wida_	117	b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre	2e-21
d1na6a1	175	b.142.1.1 (A:4-178) Restriction endonuclease EcoRI	5e-12
d1yela1	102	b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid	1e-04

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 79.6 bits (196), Expect = 2e-21
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 5/100 (5%)

Query: 7   MRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKA---GFWMHLEDMDFNKVWTFKF 63
              LFEK +  SDV    R+V+PK  AE + P  +      G  ++ ED++  KVW F++
Sbjct: 3   AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVN-GKVWRFRY 61

Query: 64  RFWPNNRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEG 103
            +W +++  +        F+K   L  GD +   +   + 
Sbjct: 62  SYWNSSQSYVLTK-GWSRFVKEKNLRAGDVVSFSRSNGQD 100

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 56.5 bits (136), Expect = 5e-12
 Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 20/115 (17%)

Query: 7   MRFLFEKQLKNSDVNAAGR----IVLPKKLAETYLPPV------NEKAGFWMHLEDMDFN 56
             F++ K+L  +D  A G     + +P  + E   P +      N       H+   D  
Sbjct: 14  NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHD-C 72

Query: 57  KVWTFKFRFWPN-------NRGRMYIFENTRAFIKRYCLELGDYIMVYKDELEGS 104
                +  ++ +       N  R+  +              G   ++     E  
Sbjct: 73  PDSEARAIYYNSAHFGKTRNEKRITRWGRGSPLQDP--ENTGALTLLAFKLDEQG 125

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.0 bits (83), Expect = 1e-04
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 11 FEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNR 70
          F K   +   +    + +P    E +  P        + L D    + WT + +      
Sbjct: 9  FMKPFISEKSS--KSLEIPLGFNEYFPAPFPIT----VDLLDYS-GRSWTVRMK---KRG 58

Query: 71 GRMYIFENTRAFIKRYCLELGDYIM 95
           ++++      F+K   LE G Y+ 
Sbjct: 59 EKVFLTVGWENFVKDNNLEDGKYLQ 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d1wida_	117	DNA-binding protein RAV1 {Thale cress (Arabidopsis	99.97
d1na6a1	175	Restriction endonuclease EcoRII, N-terminal domain	99.82
d1yela1	102	At1g16640 {Thale cress (Arabidopsis thaliana) [Tax	99.64
d1ppya_	118	Pyruvoyl dependent aspartate decarboxylase, ADC {E	90.7
g1uhe.1	121	Pyruvoyl dependent aspartate decarboxylase, ADC {H	82.55

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.9e-30  Score=171.49  Aligned_cols=96  Identities=29%  Similarity=0.573  Sum_probs=84.6

Q ss_pred             cccceeEEEecccCCCCCCCcEEeehhhhhccCCCCCC---CCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeec-ChH
Q 043432            5 FLMRFLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNE---KAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFE-NTR   80 (105)
Q Consensus         5 ~~~~~~f~K~LT~SDv~~~~rl~iPk~~ae~~lP~l~~---~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~-gW~   80 (105)
                      +.+.++|+|+||+|||++.+||+||+++|++|||.++.   .+++.|.+.|.+ |++|.|+|++|.+  ++.|+|+ ||.
T Consensus         1 ~~~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~-g~~W~~~~~~~~~--~~~~~l~~GW~   77 (117)
T d1wida_           1 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVN-GKVWRFRYSYWNS--SQSYVLTKGWS   77 (117)
T ss_dssp             CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETT-TEEEEEEEEEETT--TTEEEEESSHH
T ss_pred             CCCceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCC-CCEEEEEEEEECC--CCceEEecCHH
Confidence            45789999999999999878999999999999999864   468999999995 9999999999954  4557777 799


Q ss_pred             HHHhhcCCCCCCEEEEEEcCCCC
Q 043432           81 AFIKRYCLELGDYIMVYKDELEG  103 (105)
Q Consensus        81 ~fV~~k~L~~GD~i~f~~~~~~g  103 (105)
                      +||++++|++||+|+|+++..++
T Consensus        78 ~Fv~~~~Lk~GD~~~F~~~~~~~  100 (117)
T d1wida_          78 RFVKEKNLRAGDVVSFSRSNGQD  100 (117)
T ss_dssp             HHHHHTTCCTTCEEEEEECCSSS
T ss_pred             HHHHHcCCCCCCEEEEEEEeCCC
Confidence            99999999999999999986543

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.1e-21  Score=135.38  Aligned_cols=94  Identities=15%  Similarity=0.238  Sum_probs=77.8

Q ss_pred             cccceeEEEecccCCCCCCCc----EEeehhhhhccCCCCCC----CCCEEE--EEEECCCCeEEEEEEEEcCC----CC
Q 043432            5 FLMRFLFEKQLKNSDVNAAGR----IVLPKKLAETYLPPVNE----KAGFWM--HLEDMDFNKVWTFKFRFWPN----NR   70 (105)
Q Consensus         5 ~~~~~~f~K~LT~SDv~~~~r----l~iPk~~ae~~lP~l~~----~~~~~l--~~~D~~~g~~W~fr~~~~~~----~~   70 (105)
                      ....++|.|.||+||+++++|    |+|||++|+.+||.|+.    ++.+.|  .+.|.+ |..|+|||+||.|    +.
T Consensus        12 ~~~~~~F~K~LtasD~g~tg~HQaG~~IPK~~ae~~FP~l~~~~e~nP~~~l~~~i~d~~-g~~w~fR~iYyn~~~~ggT   90 (175)
T d1na6a1          12 CENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHD-CPDSEARAIYYNSAHFGKT   90 (175)
T ss_dssp             HSSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSC-CCCEEEEEEEECGGGTTSC
T ss_pred             CCceEEEEEEcccccccccCCccceeeecHHHHHHhCCCCCcccccCCCceEEEEEecCC-CCeeEEEEEEECCccCCCc
Confidence            356889999999999998886    99999999999999863    244555  456995 9999999999965    22


Q ss_pred             CcceeecC-hHHHHhhcCCCCCCEEEEEEc
Q 043432           71 GRMYIFEN-TRAFIKRYCLELGDYIMVYKD   99 (105)
Q Consensus        71 s~~y~l~g-W~~fV~~k~L~~GD~i~f~~~   99 (105)
                      ...|.||. |..|+..+.+.+||.++|.+.
T Consensus        91 RneyRiT~~g~~~~~~~~~n~G~l~i~af~  120 (175)
T d1na6a1          91 RNEKRITRWGRGSPLQDPENTGALTLLAFK  120 (175)
T ss_dssp             CCEEEEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred             cccEEEEeccccccccCccccccEEEEEee
Confidence            36699996 799999999999999999885

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.64  E-value=5.4e-16  Score=99.68  Aligned_cols=81  Identities=20%  Similarity=0.365  Sum_probs=65.7

Q ss_pred             eeEEEecccCCCCCCCcEEeehhhhhccCCCCCCCCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeec-ChHHHHhhcC
Q 043432            9 FLFEKQLKNSDVNAAGRIVLPKKLAETYLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFE-NTRAFIKRYC   87 (105)
Q Consensus         9 ~~f~K~LT~SDv~~~~rl~iPk~~ae~~lP~l~~~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~-gW~~fV~~k~   87 (105)
                      .-|-|+|.+++.+  .+|.||+..+..+.+.+.    ..+.++|.+ |+.|.+++...  . .. .+|+ ||.+||++++
T Consensus         7 ~~Ffkv~~~~~~~--~~L~IP~~F~~~~~~~~~----~~i~L~d~~-G~~W~v~~~~~--~-~~-~~~~~GW~~Fv~~n~   75 (102)
T d1yela1           7 VQFMKPFISEKSS--KSLEIPLGFNEYFPAPFP----ITVDLLDYS-GRSWTVRMKKR--G-EK-VFLTVGWENFVKDNN   75 (102)
T ss_dssp             EEEEEECCHHHHT--TCEECCHHHHTTCCCCCC----SEEEEEETT-SCEEEEEEEEE--T-TE-EEECTTHHHHHHHHT
T ss_pred             CeEEEEEcCcccC--CCEECCHHHHHhCCCCCC----CEEEEEcCC-CCEEEEEEEEe--C-Ce-EEEccCHHHHHHHcC
Confidence            3588999999876  689999999987665543    578889995 99999998865  2 23 4455 8999999999


Q ss_pred             CCCCCEEEEEEcC
Q 043432           88 LELGDYIMVYKDE  100 (105)
Q Consensus        88 L~~GD~i~f~~~~  100 (105)
                      |++||.|+|.-+.
T Consensus        76 L~~GD~~vF~~~~   88 (102)
T d1yela1          76 LEDGKYLQFIYDR   88 (102)
T ss_dssp             CCTTCEEEEEECS
T ss_pred             CCcCCEEEEEEcC
Confidence            9999999997653

>d1ppya_ b.52.2.1 (A:) Pyruvoyl dependent aspartate decarboxylase, ADC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: ADC-like
family: Pyruvoyl dependent aspartate decarboxylase, ADC
domain: Pyruvoyl dependent aspartate decarboxylase, ADC
species: Escherichia coli [TaxId: 562]

Probab=90.70  E-value=1.1  Score=27.82  Aligned_cols=76  Identities=11%  Similarity=0.269  Sum_probs=56.4

Q ss_pred             EEEecccCCCCCCCcEEeehhhhhc--cCCCCCCCCCEEEEEEECCCCeEEEEEEEEcCCCCCcceeecChHHHHhhcCC
Q 043432           11 FEKQLKNSDVNAAGRIVLPKKLAET--YLPPVNEKAGFWMHLEDMDFNKVWTFKFRFWPNNRGRMYIFENTRAFIKRYCL   88 (105)
Q Consensus        11 f~K~LT~SDv~~~~rl~iPk~~ae~--~lP~l~~~~~~~l~~~D~~~g~~W~fr~~~~~~~~s~~y~l~gW~~fV~~k~L   88 (105)
                      =.-..|..|+..-|.+.|.++..++  ++|.      -.|.+.+..+|..|+ .|.+.....|+.-.|.|    .-++..
T Consensus        11 Hra~VT~a~l~YeGSitID~~Lm~aagi~~~------EkV~V~Nv~NG~Rf~-TYvI~g~~gSg~I~lNG----aAAr~~   79 (118)
T d1ppya_          11 HRVKVTHADLHYEGSCAIDQDFLDAAGILEN------EAIDIWNVTNGKRFS-TYAIAAERGSRIISVNG----AAAHCA   79 (118)
T ss_dssp             EEEECCCCSSCCTTSEEEEHHHHHHHTCCTT------CEEEEEETTTCCEEE-EEEEEECTTCCCEECTT----TTGGGC
T ss_pred             cCcEEeccccceeEEEEECHHHHHHcCCCCC------CEEEEEECCCCcEEE-EEEEEcCCCCCEEEecC----hhheec
Confidence            3456799999988999999988764  4554      378999987787665 34555445567777777    457788


Q ss_pred             CCCCEEEEE
Q 043432           89 ELGDYIMVY   97 (105)
Q Consensus        89 ~~GD~i~f~   97 (105)
                      ++||.|++.
T Consensus        80 ~~GD~vII~   88 (118)
T d1ppya_          80 SVGDIVIIA   88 (118)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCCEEEEE
Confidence            899999874