Citrus Sinensis ID: 043434

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90
MHSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVEMMKLDILDGRNQPGREPEAPQQPFPAETPCCSIM
cccHHHHHHHHHHHHccccEEEEEEEccccccEEEEccccHHHHHHHHHHcccEEEEEEEEEcccccccccccccccccccccccccccc
ccccccHHHHHHHHHcccccEEEEEEcccccEEEEEEcccHHHHHHHHHHHcccEEEEEEEEEccccccccccccccccccccccccccc
MHSPKCRTKAFQIIagfpgllsvamkgddlrhmEVIGDIDEVALANMLRRKIGYVEMMKLDIldgrnqpgrepeapqqpfpaetpccsim
MHSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVEMMKLDILDGRNQPgrepeapqqpfpaetpccsim
MHSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVEMMKLDILDGRNQPGRepeapqqpfpaetpCCSIM
*******TKAFQIIAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVEMMKLDIL***************************
******R**AFQIIAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVEMM*************************TPCCSIM
MHSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVEMMKLDILDGRNQPGREPEAPQQPFPAETPCCSIM
****KCRTKA*Q***GFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVEMMKLDILDGR********APQQPFPAETPCC***
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SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVEMMKLDILDGRNQPGREPEAPQQPFPAETPCCSIM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query90
224104235114 predicted protein [Populus trichocarpa] 0.955 0.754 0.349 3e-08
224150813118 predicted protein [Populus trichocarpa] 0.966 0.737 0.352 2e-07
224104585121 predicted protein [Populus trichocarpa] 0.666 0.495 0.426 3e-07
225454107124 PREDICTED: uncharacterized protein LOC10 0.9 0.653 0.352 1e-06
225447460118 PREDICTED: uncharacterized protein LOC10 0.866 0.661 0.291 3e-06
255584629119 metal ion binding protein, putative [Ric 0.888 0.672 0.380 3e-06
296085070 213 unnamed protein product [Vitis vinifera] 0.833 0.352 0.302 3e-06
125540061130 hypothetical protein OsI_07838 [Oryza sa 0.666 0.461 0.426 6e-06
115446971133 Os02g0585200 [Oryza sativa Japonica Grou 0.666 0.451 0.426 7e-06
357500183 213 hypothetical protein MTR_6g082190 [Medic 0.644 0.272 0.423 1e-05
>gi|224104235|ref|XP_002313367.1| predicted protein [Populus trichocarpa] gi|222849775|gb|EEE87322.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 20/106 (18%)

Query: 2   HSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIGD-IDEVALANMLRRKIGYVEMMKL 60
           + PK RTKA +I  G  G+ S  + G+D   +EV+GD +D V L N+LR+K+GY E+  +
Sbjct: 12  NGPKSRTKALRIAVGLSGVESARLGGEDKSQIEVVGDGVDAVQLTNLLRKKVGYAELASV 71

Query: 61  DILDGRNQPGREPEA------------PQQPF----PAETPCCSIM 90
           + +  + +   EPE             PQ       P + P CSIM
Sbjct: 72  EAVGEKKE---EPEVQPVDWPVYVGGMPQTYIYPIHPHQDPSCSIM 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224150813|ref|XP_002337014.1| predicted protein [Populus trichocarpa] gi|222837833|gb|EEE76198.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224104585|ref|XP_002333922.1| predicted protein [Populus trichocarpa] gi|224129254|ref|XP_002320539.1| predicted protein [Populus trichocarpa] gi|222839172|gb|EEE77523.1| predicted protein [Populus trichocarpa] gi|222861312|gb|EEE98854.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225454107|ref|XP_002268731.1| PREDICTED: uncharacterized protein LOC100255094 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225447460|ref|XP_002266819.1| PREDICTED: uncharacterized protein LOC100242530 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255584629|ref|XP_002533038.1| metal ion binding protein, putative [Ricinus communis] gi|223527176|gb|EEF29346.1| metal ion binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296085070|emb|CBI28485.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|125540061|gb|EAY86456.1| hypothetical protein OsI_07838 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115446971|ref|NP_001047265.1| Os02g0585200 [Oryza sativa Japonica Group] gi|46806263|dbj|BAD17471.1| unknown protein [Oryza sativa Japonica Group] gi|113536796|dbj|BAF09179.1| Os02g0585200 [Oryza sativa Japonica Group] gi|125582667|gb|EAZ23598.1| hypothetical protein OsJ_07297 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357500183|ref|XP_003620380.1| hypothetical protein MTR_6g082190 [Medicago truncatula] gi|355495395|gb|AES76598.1| hypothetical protein MTR_6g082190 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query90
TAIR|locus:2087580118 AT3G20180 "AT3G20180" [Arabido 0.677 0.516 0.370 9e-06
TAIR|locus:2091112157 AT3G07600 [Arabidopsis thalian 0.6 0.343 0.363 1.9e-05
TAIR|locus:2138376110 AT4G05030 "AT4G05030" [Arabido 0.711 0.581 0.307 0.0001
TAIR|locus:2156253181 AT5G48290 [Arabidopsis thalian 0.666 0.331 0.327 0.00013
TAIR|locus:2087580 AT3G20180 "AT3G20180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query:     1 MHSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIGD-IDEVALANMLRRKIGYVEMMK 59
             ++S KCR KA Q+     G+ SVAM+G+    + V+GD +D  +L   LR+K  +V +  
Sbjct:     7 VNSEKCRKKAMQVAVAADGVTSVAMEGEFQDELVVVGDGVDSASLIMALRKKACHVTLET 66

Query:    60 LD 61
             L+
Sbjct:    67 LE 68
GO:0005575 "cellular_component" evidence=ND
TAIR|locus:2091112 AT3G07600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138376 AT4G05030 "AT4G05030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156253 AT5G48290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query90
pfam0040362 pfam00403, HMA, Heavy-metal-associated domain 2e-04
>gnl|CDD|215902 pfam00403, HMA, Heavy-metal-associated domain Back     alignment and domain information 
 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 1  MHSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLR--RKIGY 54
          M    C  K  + ++  PG+ SV++  +    + V GD D + L  + +   K GY
Sbjct: 7  MTCAGCAKKVEKALSKLPGVSSVSVDLET-GKVTVTGDPDPLKLEKLKKAIEKAGY 61

Length = 62

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 90
KOG160373 consensus Copper chaperone [Inorganic ion transpor 99.65
PF0040362 HMA: Heavy-metal-associated domain; InterPro: IPR0 99.18
COG260871 CopZ Copper chaperone [Inorganic ion transport and 98.34
KOG4656 247 consensus Copper chaperone for superoxide dismutas 97.93
PLN02957 238 copper, zinc superoxide dismutase 97.57
PRK10671 834 copA copper exporting ATPase; Provisional 96.68
COG2217 713 ZntA Cation transport ATPase [Inorganic ion transp 94.39
TIGR0000368 copper ion binding protein. This model describes a 93.23
PRK10671 834 copA copper exporting ATPase; Provisional 92.98
KOG0207 951 consensus Cation transport ATPase [Inorganic ion t 86.42
PF0268095 DUF211: Uncharacterized ArCR, COG1888; InterPro: I 85.88
PRK11033 741 zntA zinc/cadmium/mercury/lead-transporting ATPase 81.75
KOG0207 951 consensus Cation transport ATPase [Inorganic ion t 80.74
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=99.65  E-value=7.2e-16  Score=96.15  Aligned_cols=58  Identities=26%  Similarity=0.414  Sum_probs=53.9

Q ss_pred             CCChhHHHHHHHHHhCCCCeeEEEeCCCCCCcEEEEEeccHHHHHHHHHhhc-CceEEEe
Q 043434            1 MHSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKI-GYVEMMK   59 (90)
Q Consensus         1 mhCekC~~Kv~k~v~~~~GV~sv~id~~~~~kvtV~G~vDp~~lv~~LrKk~-~~aeivs   59 (90)
                      |||+||++++.+.+..++||+++.+|. .+++|||+|++||..|+++|+|++ +++++|.
T Consensus        13 ~~C~gc~~kV~~~l~~~~GV~~v~id~-~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~~   71 (73)
T KOG1603|consen   13 MHCEGCARKVKRVLQKLKGVESVDIDI-KKQKVTVKGNVDPVKLLKKLKKTGGKRAELWK   71 (73)
T ss_pred             cccccHHHHHHHHhhccCCeEEEEecC-CCCEEEEEEecCHHHHHHHHHhcCCCceEEec
Confidence            899999999999999999999999998 999999999999999999999977 4666654

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures Back     alignment and domain information
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02957 copper, zinc superoxide dismutase Back     alignment and domain information
>PRK10671 copA copper exporting ATPase; Provisional Back     alignment and domain information
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00003 copper ion binding protein Back     alignment and domain information
>PRK10671 copA copper exporting ATPase; Provisional Back     alignment and domain information
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function Back     alignment and domain information
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional Back     alignment and domain information
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query90
3iwl_A68 Copper transport protein ATOX1; beta-alpha-beta-BE 99.2
1cc8_A73 Protein (metallochaperone ATX1); copper transport, 99.1
4a4j_A69 Pacszia, cation-transporting ATPase PACS; hydrolas 98.94
2crl_A98 Copper chaperone for superoxide dismutase; SOD1, f 98.9
3dxs_X74 Copper-transporting ATPase RAN1; CXXC motif, ferre 98.85
2roe_A66 Heavy metal binding protein; NMR {Thermus thermoph 98.79
3fry_A73 Probable copper-exporting P-type ATPase A; transpo 98.71
2xmm_A64 SSR2857 protein, ATX1; metal transport, copper hom 98.7
2xmw_A71 PACS-N, cation-transporting ATPase PACS; hydrolase 98.56
1fvq_A72 Copper-transporting ATPase; APO-CCC2A, hydrolase; 98.55
1cpz_A68 Protein (COPZ); copper chaperone, metal transport, 98.53
1osd_A72 MERP, hypothetical protein MERP; mercury resistanc 98.53
1qup_A 222 Superoxide dismutase 1 copper chaperone; two domai 98.49
3cjk_B75 Copper-transporting ATPase 1; HAH1, ATP7B, menkes 98.49
1aw0_A72 Menkes copper-transporting ATPase; copper-binding 98.46
1yg0_A66 COP associated protein; open-faced beta-sandwich, 98.44
2l3m_A71 Copper-ION-binding protein; structural genomics, c 98.42
2kt2_A69 Mercuric reductase; nmera, MERA, HMA domain, mercu 98.42
1yjr_A75 Copper-transporting ATPase 1; metallochaperone, pr 98.4
2k2p_A85 Uncharacterized protein ATU1203; putative metal-bi 98.39
1jk9_B 249 CCS, copper chaperone for superoxide dismutase; pr 98.37
2qif_A69 Copper chaperone COPZ; tetranuclear Cu(I) cluster; 98.33
1kvi_A79 Copper-transporting ATPase 1; menkes, Cu-protein, 98.31
2g9o_A90 Copper-transporting ATPase 1; menkes disease, solu 98.31
1q8l_A84 Copper-transporting ATPase 1; metal binding protei 98.3
2kyz_A67 Heavy metal binding protein; structural genomics, 98.25
1mwy_A73 ZNTA; open-faced beta-sandwich fold, beta-alpha-be 98.23
1y3j_A77 Copper-transporting ATPase 1; ferrodoxin-like fold 98.2
1p6t_A151 Potential copper-transporting ATPase; COPA, P-type 98.19
1opz_A76 Potential copper-transporting ATPase; mutation, fo 98.17
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 98.15
2aj0_A71 Probable cadmium-transporting ATPase; ferrodoxin-l 98.12
1jww_A80 Potential copper-transporting ATPase; beta-alpha-b 98.11
2ldi_A71 Zinc-transporting ATPase; metal homeostasis, metal 98.08
2kkh_A95 Putative heavy metal transporter; zinc transport, 98.05
2ofg_X111 Zinc-transporting ATPase; ferredoxin-like fold, be 97.98
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 97.94
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 97.7
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 97.49
1p6t_A151 Potential copper-transporting ATPase; COPA, P-type 97.25
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 97.06
3bpd_A100 Uncharacterized protein; heptamer, Mg+2 ION, PSI-2 88.58
2x3d_A96 SSO6206; unknown function; 2.70A {Sulfolobus solfa 85.81
2raq_A97 Conserved protein MTH889; alpha-beta protein, stru 84.27
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Back     alignment and structure
Probab=99.20  E-value=5.3e-11  Score=69.94  Aligned_cols=58  Identities=12%  Similarity=0.174  Sum_probs=53.9

Q ss_pred             CCChhHHHHHHHHHhCCCCeeEEEeCCCCCCcEEEEEeccHHHHHHHHHhhcCceEEEec
Q 043434            1 MHSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVEMMKL   60 (90)
Q Consensus         1 mhCekC~~Kv~k~v~~~~GV~sv~id~~~~~kvtV~G~vDp~~lv~~LrKk~~~aeivsv   60 (90)
                      |||..|..++.+++.+++|| ++.+|. ..++++|.|++++..|...|++.+-.++++++
T Consensus        10 m~C~~C~~~i~~~l~~~~gV-~v~v~~-~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~   67 (68)
T 3iwl_A           10 MTCGGCAEAVSRVLNKLGGV-KYDIDL-PNKKVCIESEHSMDTLLATLKKTGKTVSYLGL   67 (68)
T ss_dssp             CCSHHHHHHHHHHHHHHCSE-EEEEET-TTTEEEEEESSCHHHHHHHHHTTCSCEEEEEC
T ss_pred             cCcHHHHHHHHHHHHcCCCe-EEEEEc-CCCEEEEEecCCHHHHHHHHHHcCCceEecCC
Confidence            89999999999999999999 999998 88999999999999999999975558888875
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A Back     alignment and structure
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A Back     alignment and structure
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0 Back     alignment and structure
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A Back     alignment and structure
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus} Back     alignment and structure
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A Back     alignment and structure
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A Back     alignment and structure
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B Back     alignment and structure
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1 Back     alignment and structure
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Back     alignment and structure
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Back     alignment and structure
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Back     alignment and structure
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A Back     alignment and structure
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Back     alignment and structure
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} Back     alignment and structure
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A Back     alignment and structure
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A Back     alignment and structure
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str} Back     alignment and structure
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Back     alignment and structure
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A Back     alignment and structure
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A Back     alignment and structure
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A Back     alignment and structure
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A Back     alignment and structure
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima} Back     alignment and structure
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A Back     alignment and structure
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A Back     alignment and structure
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Back     alignment and structure
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A Back     alignment and structure
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A Back     alignment and structure
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} Back     alignment and structure
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Back     alignment and structure
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Back     alignment and structure
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1 Back     alignment and structure
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus} Back     alignment and structure
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query90
d1fe0a_66 ATX1 metallochaperone protein (ATOX1) {Human (Homo 99.44
d1qupa272 Copper chaperone for superoxide dismutase, N-termi 99.42
d1cc8a_72 ATX1 metallochaperone protein (ATOX1) {Baker's yea 99.36
d1sb6a_64 Copper chaperone {Synechocystis sp. pcc 6803, Scat 99.02
d2ggpb172 Copper transporter domain ccc2a {Baker's yeast (Sa 99.01
d1cpza_68 Copper chaperone {Enterococcus hirae [TaxId: 1354] 98.98
d1osda_72 Mercuric ion binding protein MerP {Ralstonia metal 98.85
d2qifa169 Copper chaperone {Bacillus subtilis, CopZ [TaxId: 98.84
d1p6ta279 Potential copper-translocating P-type ATPase CopA 98.78
d1kvja_79 Menkes copper-transporting ATPase {Human (Homo sap 98.78
d1mwza_73 Metal ion-transporting ATPase ZntA, N-terminal dom 98.76
d2aw0a_72 Menkes copper-transporting ATPase {Human (Homo sap 98.73
d1q8la_84 Menkes copper-transporting ATPase {Human (Homo sap 98.73
d1p6ta172 Potential copper-translocating P-type ATPase CopA 98.73
d2raqa193 Uncharacterized protein MTH889 {Methanobacterium t 82.02
d3bpda191 Uncharacterized protein AF1549 {Archaeoglobus fulg 81.76
>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

Probab=99.44  E-value=1.4e-13  Score=82.32  Aligned_cols=58  Identities=12%  Similarity=0.174  Sum_probs=54.2

Q ss_pred             CCChhHHHHHHHHHhCCCCeeEEEeCCCCCCcEEEEEeccHHHHHHHHHhhcCceEEEec
Q 043434            1 MHSPKCRTKAFQIIAGFPGLLSVAMKGDDLRHMEVIGDIDEVALANMLRRKIGYVEMMKL   60 (90)
Q Consensus         1 mhCekC~~Kv~k~v~~~~GV~sv~id~~~~~kvtV~G~vDp~~lv~~LrKk~~~aeivsv   60 (90)
                      |||.+|.++|.++|.+++|| ++.+|. ..++++|.|++|+..|++.|++.+..|+|+.+
T Consensus         9 M~C~~C~~~I~~aL~~~~gv-~v~v~~-~~~~v~V~~~~~~~~i~~~I~~~Gy~a~lig~   66 (66)
T d1fe0a_           9 MTCGGCAEAVSRVLNKLGGV-KYDIDL-PNKKVCIESEHSMDTLLATLKKTGKTVSYLGL   66 (66)
T ss_dssp             CCSHHHHHHHHHHHHHHCSE-EEEEET-TTTEEEEEESSCHHHHHHHHHTTTSCEEEEEC
T ss_pred             cCchHHHHHHHHHHhcCCCc-EEEEEc-CCCEEEEEeeCCHHHHHHHHHHhCCeEEEeeC
Confidence            89999999999999999998 699998 99999999999999999999976669999864
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Back     information, alignment and structure
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Back     information, alignment and structure
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Back     information, alignment and structure
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Back     information, alignment and structure
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure