Citrus Sinensis ID: 043446

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780----

MATAANKTDETIVCYSPNMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSIYKPARRFLPYKRRTIQKSKPDSEFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMKIANDESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLVVQ

ccccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHccccccccEEEEEEEEccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHHHccccccEEEEEccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHccccccEEEEccccccccccccccccccccccccHHHHHHHcccccccccEEEEc

ccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHEEEEHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccHHccccccccccccccEEEEEEEccccccHHHHHHHHHccccccccEEEEEEEEEEccccccHHEEHcccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHHHHHccEEEEEEEccccccccccEccccHHHHHHHHHHHHccccEEEEEEEcccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccccccEEccccHHHHHHcHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHcccccEEEEEccccccccHHcccccHHHccccccccHHcEcccccccEEEEEEc

mataanktdetivcyspnmittngvwqgdnpldyslplFILQLTLVVVTTRLLVLVlkpfrqprviSEIIGgvllgpsvlgrntafantifpLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVggmtlpfviGGCFSFILhkknqgmnqGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWmirrtpegesfSEFYVCLILTGVMIsgfitdaigthSVFGAFVFGlvipngplgltLIEKLEDFVSGLLLPLFFAISglktdissihgTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVgkdqkvlddeSFAIMVIVAVVMTGIITpivtsiykparrflpykrrtiqkskpdseFRVLVCvhtprnvpTIINLLeashptkrspicVYVLHLVELTGRASAMLIVHNTrksgrpalnrtqaQSDHIINAFENYeqhtgcvtvqpltaispyssmHEDICNLAEDKRVALIIIpfhkhqtvdggmeatnpAFRMVNQNllanapcsvgilvdrglngstrlaANQVTHNIAVLFFGGPDDREALAYAWRmsehpgnnltVMRFIAaeevepaerqspdqngltvetendnqrqLDEEYINEFRMKIANDESVVYTEKLANNGEETLAAIRSMdhshdlfivgrgqgvtspltdgltdwsecpelgaigdllassdfaSTVSVLVVQ

mataanktdetivCYSPNMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVLVLkpfrqprvisEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIItpivtsiykparrflpykrrtiqkskpdsefrVLVCVHTPRNVPTIINLLeashptkrsPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPaerqspdqngltvetendnqrqLDEEYINEFRMKIANDESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLVVQ

MATAANKTDETIVCYSPNMITTNGVWQGDNPLDYSLPLFIlqltlvvvttrllvlvlKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANvgllyflflvgvEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSIYKPARRFLPYKRRTIQKSKPDSEFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEVEPAERQSPDQNGLTVETENDNQRQLDEEYINEFRMKIANDESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLVVQ

**********TIVCYSPNMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSIYKPARRFLPYKRRTIQK***DSEFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNT***************DHIINAFENYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIA********************************YINEFRMKIANDESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLV**

**********TIVCYSPNMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSIYKPAR********************VLVCVHTPRNVPTIINLLEASHP*KRSPICVYVLHLVELTGRASAML*********************HIINAFENYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQT**********AFRMVNQNLLANAPCSVGILVDRGLNGSTR*AANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAE**********************NQRQLDEEYINEFRMKIANDESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRG***************ECPELGAIGDLLASSDFASTVSVLVVQ

*********ETIVCYSPNMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSIYKPARRFLPYKRRTIQKSKPDSEFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAEEV********************NQRQLDEEYINEFRMKIANDESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLVVQ

********DETIVCYSPNMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTGIITPIVTSIYKPARRFLPYKRRTIQKSKPDSEFRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNT***********QAQSDHIINAFENYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRFIAAE*************GLTVETENDNQRQLDEEYINEFRMKIANDESVVYTEKLANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLVVQ

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		784	2.2.26 [Sep-21-2011]
Q9SIT5		821	Cation/H(+) antiporter 15	yes	no	1.0	0.954	0.764	0.0
Q9LUN4		800	Cation/H(+) antiporter 19	no	no	0.974	0.955	0.524	0.0
Q9FFR9		810	Cation/H(+) antiporter 18	no	no	0.984	0.953	0.515	0.0
Q9SUQ7		820	Cation/H(+) antiporter 17	no	no	0.968	0.925	0.477	0.0
Q9M353		842	Cation/H(+) antiporter 20	no	no	0.968	0.901	0.480	0.0
Q1HDT3		811	Cation/H(+) antiporter 16	no	no	0.952	0.921	0.459	0.0
Q8VYD4		867	Cation/H(+) antiporter 23	no	no	0.971	0.878	0.430	1e-179
Q9SKA9		832	Cation/H(+) antiporter 21	no	no	0.942	0.888	0.392	1e-163
Q9LMJ1		829	Cation/H(+) antiporter 14	no	no	0.959	0.907	0.375	1e-148
O22920		831	Cation/H(+) symporter 13	no	no	0.951	0.897	0.375	1e-138

>sp\|Q9SIT5\|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1	Back alignment and function desciption

 Score = 1224 bits (3167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/787 (76%), Positives = 700/787 (88%), Gaps = 3/787 (0%)

Query: 1   MATAAN-KTDETIVCYSPNMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVLVLKP 59
           MAT+    TD +I+CY+P+MITTNGVWQGDNPLD+SLPLF+LQLTLVVV TR  V +LKP
Sbjct: 1   MATSEEPSTDASIICYAPSMITTNGVWQGDNPLDFSLPLFVLQLTLVVVVTRFFVFILKP 60

Query: 60  FRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMD 119
           FRQPRVISEI+GG++LGPSVLGR+T FA+TIFP RSVMVLETMANVGLLYFLFLVGVEMD
Sbjct: 61  FRQPRVISEILGGIVLGPSVLGRSTKFAHTIFPQRSVMVLETMANVGLLYFLFLVGVEMD 120

Query: 120 ISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPV 179
           I  +R+TGK+AL IA+GGM LPF+IG  FSF +H+    + QGT++LFLGVALSVTAFPV
Sbjct: 121 IMVVRKTGKRALTIAIGGMVLPFLIGAAFSFSMHRSEDHLGQGTYILFLGVALSVTAFPV 180

Query: 180 LARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAF 239
           LARILAELKLINTE+GRI+MS+AL+NDM AW+LLA AIAL E+D ++ ASLWV++S A F
Sbjct: 181 LARILAELKLINTEIGRISMSAALVNDMFAWILLALAIALAESDKTSFASLWVMISSAVF 240

Query: 240 VIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGL 299
           +  CVFVVRP I W+IR+TPEGE+FSEF++CLILTGVMISGFITDAIGTHSVFGAFVFGL
Sbjct: 241 IAVCVFVVRPGIAWIIRKTPEGENFSEFHICLILTGVMISGFITDAIGTHSVFGAFVFGL 300

Query: 300 VIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGK 359
           VIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKT+I++I G +TW+   LVI LACAGK
Sbjct: 301 VIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTNIAAIQGPATWLTLFLVIFLACAGK 360

Query: 360 IAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVM 419
           + GT++V+  + MP+REG+TLGLL+NTKGLVEMIVLNVGKDQKVLDDE+FA MV+VA+VM
Sbjct: 361 VIGTVIVAFFHGMPVREGITLGLLLNTKGLVEMIVLNVGKDQKVLDDETFATMVLVALVM 420

Query: 420 TGIITPIVTSIYKPARRFLPYKRRTIQKSKPDSEFRVLVCVHTPRNVPTIINLLEASHPT 479
           TG+ITPIVT +YKP ++ + YKRRTIQ++KPDSE RVLVCVHTPRNVPTIINLLEASHPT
Sbjct: 421 TGVITPIVTILYKPVKKSVSYKRRTIQQTKPDSELRVLVCVHTPRNVPTIINLLEASHPT 480

Query: 480 KRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHTGCV 539
           KRSPIC+YVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQH   V
Sbjct: 481 KRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAAFV 540

Query: 540 TVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLA 599
            VQPLTAISPYS+MHED+C+LAEDKRV+ IIIPFHK QTVDGGME+TNPA+R+VNQNLL 
Sbjct: 541 AVQPLTAISPYSTMHEDVCSLAEDKRVSFIIIPFHKQQTVDGGMESTNPAYRLVNQNLLE 600

Query: 600 NAPCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVM 659
           N+PCSVGILVDRGLNG+TRL +N V+  +AVLFFGGPDDREALAYAWRM++HPG  LTV+
Sbjct: 601 NSPCSVGILVDRGLNGATRLNSNTVSLQVAVLFFGGPDDREALAYAWRMAQHPGITLTVL 660

Query: 660 RFIAAE-EVEPAERQSPDQNGLTV-ETENDNQRQLDEEYINEFRMKIANDESVVYTEKLA 717
           RFI  E E + A  ++ + + L + + ++  QRQLD++YIN FR + A  ES+VY EKL 
Sbjct: 661 RFIHDEDEADTASTRATNDSDLKIPKMDHRKQRQLDDDYINLFRAENAEYESIVYIEKLV 720

Query: 718 NNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFAST 777
           +NGEET+AA+RSMD SHDLFIVGRG+G++SPLT GLTDWSECPELGAIGDLLASSDFA+T
Sbjct: 721 SNGEETVAAVRSMDSSHDLFIVGRGEGMSSPLTAGLTDWSECPELGAIGDLLASSDFAAT 780

Query: 778 VSVLVVQ 784
           VSVLVVQ
Sbjct: 781 VSVLVVQ 787

May operate as a cation/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9LUN4\|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1	Back alignment and function description

>sp\|Q9FFR9\|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1	Back alignment and function description

>sp\|Q9SUQ7\|CHX17_ARATH Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1	Back alignment and function description

>sp\|Q9M353\|CHX20_ARATH Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1	Back alignment and function description

>sp\|Q1HDT3\|CHX16_ARATH Cation/H(+) antiporter 16 OS=Arabidopsis thaliana GN=CHX16 PE=2 SV=1	Back alignment and function description

>sp\|Q8VYD4\|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1	Back alignment and function description

>sp\|Q9SKA9\|CHX21_ARATH Cation/H(+) antiporter 21 OS=Arabidopsis thaliana GN=CHX21 PE=2 SV=2	Back alignment and function description

>sp\|Q9LMJ1\|CHX14_ARATH Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1	Back alignment and function description

>sp\|O22920\|CHX13_ARATH Cation/H(+) symporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		784
255550512		834	Na(+)/H(+) antiporter, putative [Ricinus	0.998	0.938	0.822	0.0
359477011		837	PREDICTED: cation/H(+) antiporter 15-lik	0.993	0.930	0.828	0.0
147785381		837	hypothetical protein VITISV_011183 [Viti	0.993	0.930	0.827	0.0
296088536		820	unnamed protein product [Vitis vinifera]	0.975	0.932	0.824	0.0
449459268		837	PREDICTED: cation/H(+) antiporter 15-lik	0.998	0.935	0.792	0.0
224096008		769	cation proton exchanger [Populus trichoc	0.978	0.997	0.780	0.0
15225447		821	cation/H(+) antiporter 15 [Arabidopsis t	1.0	0.954	0.764	0.0
297831844		823	hypothetical protein ARALYDRAFT_480314 [	1.0	0.952	0.762	0.0
356507460		827	PREDICTED: cation/H(+) antiporter 15-lik	0.996	0.944	0.723	0.0
357464691		838	Cation proton exchanger [Medicago trunca	0.997	0.933	0.724	0.0

>gi\|255550512\|ref\|XP_002516306.1\| Na(+)/H(+) antiporter, putative [Ricinus communis] gi\|223544536\|gb\|EEF46053.1\| Na(+)/H(+) antiporter, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1340 bits (3469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/789 (82%), Positives = 719/789 (91%), Gaps = 6/789 (0%)

Query: 2   ATAANKTDETIVCYSPNMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVLVLKPFR 61
           A     T++TIVCY+P MITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLV +LKPFR
Sbjct: 7   AMKNTTTEDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVFILKPFR 66

Query: 62  QPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDIS 121
           QPRVISEI+GGV+LGPS+LGR+  FANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDIS
Sbjct: 67  QPRVISEIMGGVILGPSMLGRSKVFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDIS 126

Query: 122 AIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPVLA 181
            I+RTGKKALAIAV GM LPF  G  FSF++H+ +  MN+GTF+LFLGVALSVTAFPVLA
Sbjct: 127 VIKRTGKKALAIAVAGMILPFFTGLAFSFLIHRDSHNMNEGTFILFLGVALSVTAFPVLA 186

Query: 182 RILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVI 241
           R+LAELKLINTELGRIAMSSALIND+CAW+LL FAIAL END+++LASLWVILS  AFVI
Sbjct: 187 RVLAELKLINTELGRIAMSSALINDICAWILLCFAIALAENDSASLASLWVILSSVAFVI 246

Query: 242 FCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVI 301
           FCVFVVRPAI W+IRRTPEGE+FSEFY+CLILTGVMISGFITDAIGTHSVFGAFVFGLVI
Sbjct: 247 FCVFVVRPAISWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVI 306

Query: 302 PNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIA 361
           PNGPLG+TLIEKLEDFVSGLLLPLFFA+SGLKT++ +I G +TW +  LVI+L   GKIA
Sbjct: 307 PNGPLGVTLIEKLEDFVSGLLLPLFFAMSGLKTNVGAIQGATTWGLLGLVILLGGVGKIA 366

Query: 362 GTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVMTG 421
           GTLLV+  YQMP+REG+TLGLLMNTKGL+EMI+LNVGKDQ+VLDDESFAIMVIVAV+MTG
Sbjct: 367 GTLLVTFFYQMPVREGLTLGLLMNTKGLIEMIILNVGKDQRVLDDESFAIMVIVAVIMTG 426

Query: 422 IITPIVTSIYKPARRFLPYKRRTIQKSKPDSEFRVLVCVHTPRNVPTIINLLEASHPTKR 481
           +ITPIVT+IY+PAR+F+PYKRRTI +SKPD+E R+LVCVHTPRNVPTIINLLEASHPTKR
Sbjct: 427 LITPIVTAIYRPARKFIPYKRRTIHRSKPDAELRILVCVHTPRNVPTIINLLEASHPTKR 486

Query: 482 SPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHTGCVTV 541
           SP+CV+VLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQH  CV+V
Sbjct: 487 SPMCVFVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAVCVSV 546

Query: 542 QPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANA 601
           QPLTAISPYS+MHEDICNLAEDKRVA IIIPFHK QTVDGGMEATNPAFR VNQN+LANA
Sbjct: 547 QPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRTVNQNVLANA 606

Query: 602 PCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVMRF 661
           PCSVGILVDRGLNGSTRLAANQ++H+IAVLFFGGPDDREAL+YAWRMSEHPG +LTVMRF
Sbjct: 607 PCSVGILVDRGLNGSTRLAANQLSHHIAVLFFGGPDDREALSYAWRMSEHPGISLTVMRF 666

Query: 662 IAAEEVEPAERQSPDQNG-----LTVETENDNQRQLDEEYINEFRMKIANDESVVYTEKL 716
           +  E+   + RQ    +      LTVET +  ++QLDEEYINEFR+ IANDESV YTE L
Sbjct: 667 LPGEDAAQSARQPGGSHHNEPRILTVETHDQREKQLDEEYINEFRIHIANDESVFYTEIL 726

Query: 717 ANNGEETLAAIRSMD-HSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFA 775
            NNGEET+AAIR MD ++HDLFIVGRGQG+ SPLT GLTDWSECPELGAIGDLLASSDFA
Sbjct: 727 VNNGEETVAAIRGMDINAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFA 786

Query: 776 STVSVLVVQ 784
           +TVSVLVVQ
Sbjct: 787 ATVSVLVVQ 795

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359477011\|ref\|XP_002262677.2\| PREDICTED: cation/H(+) antiporter 15-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147785381\|emb\|CAN66285.1\| hypothetical protein VITISV_011183 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296088536\|emb\|CBI37527.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449459268\|ref\|XP_004147368.1\| PREDICTED: cation/H(+) antiporter 15-like [Cucumis sativus] gi\|449513321\|ref\|XP_004164295.1\| PREDICTED: cation/H(+) antiporter 15-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224096008\|ref\|XP_002310518.1\| cation proton exchanger [Populus trichocarpa] gi\|222853421\|gb\|EEE90968.1\| cation proton exchanger [Populus trichocarpa]	Back alignment and taxonomy information

>gi|15225447|ref|NP_178985.1| cation/H(+) antiporter 15 [Arabidopsis thaliana] gi|75313480|sp|Q9SIT5.1|CHX15_ARATH RecName: Full=Cation/H(+) antiporter 15; AltName: Full=Protein CATION/H+ EXCHANGER 15; Short=AtCHX15 gi|4558666|gb|AAD22684.1| putative Na/H antiporter [Arabidopsis thaliana] gi|61658321|gb|AAX49544.1| cation/H+ exchanger [Arabidopsis thaliana] gi|330251152|gb|AEC06246.1| cation/H(+) antiporter 15 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297831844\|ref\|XP_002883804.1\| hypothetical protein ARALYDRAFT_480314 [Arabidopsis lyrata subsp. lyrata] gi\|297329644\|gb\|EFH60063.1\| hypothetical protein ARALYDRAFT_480314 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356507460\|ref\|XP_003522484.1\| PREDICTED: cation/H(+) antiporter 15-like [Glycine max]	Back alignment and taxonomy information

>gi\|357464691\|ref\|XP_003602627.1\| Cation proton exchanger [Medicago truncatula] gi\|355491675\|gb\|AES72878.1\| Cation proton exchanger [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		784
TAIR\|locus:2054152		821	CHX15 "cation/hydrogen exchang	1.0	0.954	0.734	2.10000000027e-315
TAIR\|locus:2090462		800	CHX19 "cation/H+ exchanger 19"	0.973	0.953	0.499	2.3e-204
TAIR\|locus:2160457		810	CHX18 "cation/H+ exchanger 18"	0.983	0.951	0.498	4.7e-199
TAIR\|locus:2084370		842	CHX20 "cation/H+ exchanger 20"	0.757	0.705	0.495	3.2e-188
TAIR\|locus:2128484		820	CHX17 "cation/H+ exchanger 17"	0.973	0.930	0.459	1.1e-181
TAIR\|locus:2024578		811	CHX16 "cation/H+ exchanger 16"	0.977	0.944	0.438	1.6e-166
TAIR\|locus:2031968		867	CHX23 "cation/H+ exchanger 23"	0.971	0.878	0.426	3.7e-158
TAIR\|locus:2007392		829	CHX14 "cation/hydrogen exchang	0.955	0.903	0.361	1.3e-130
TAIR\|locus:2060827		831	ATCHX13 [Arabidopsis thaliana	0.947	0.894	0.363	2.6e-125
TAIR\|locus:2166168		859	CHX24 "cation/H+ exchanger 24"	0.977	0.891	0.308	3.4e-100

TAIR\|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3025 (1069.9 bits), Expect = 2.1e-315, P = 2.1e-315
 Identities = 578/787 (73%), Positives = 675/787 (85%)

Query:     1 MATAAN-KTDETIVCYSPNMITTNGVWQGDNPLDYSLPLFIXXXXXXXXXXXXXXXXXKP 59
             MAT+    TD +I+CY+P+MITTNGVWQGDNPLD+SLPLF+                 KP
Sbjct:     1 MATSEEPSTDASIICYAPSMITTNGVWQGDNPLDFSLPLFVLQLTLVVVVTRFFVFILKP 60

Query:    60 FRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANXXXXXXXXXXXXEMD 119
             FRQPRVISEI+GG++LGPSVLGR+T FA+TIFP RSVMVLETMAN            EMD
Sbjct:    61 FRQPRVISEILGGIVLGPSVLGRSTKFAHTIFPQRSVMVLETMANVGLLYFLFLVGVEMD 120

Query:   120 ISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPV 179
             I  +R+TGK+AL IA+GGM LPF+IG  FSF +H+    + QGT++LFLGVALSVTAFPV
Sbjct:   121 IMVVRKTGKRALTIAIGGMVLPFLIGAAFSFSMHRSEDHLGQGTYILFLGVALSVTAFPV 180

Query:   180 LARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAF 239
             LARILAELKLINTE+GRI+MS+AL+NDM AW+LLA AIAL E+D ++ ASLWV++S A F
Sbjct:   181 LARILAELKLINTEIGRISMSAALVNDMFAWILLALAIALAESDKTSFASLWVMISSAVF 240

Query:   240 VIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGL 299
             +  CVFVVRP I W+IR+TPEGE+FSEF++CLILTGVMISGFITDAIGTHSVFGAFVFGL
Sbjct:   241 IAVCVFVVRPGIAWIIRKTPEGENFSEFHICLILTGVMISGFITDAIGTHSVFGAFVFGL 300

Query:   300 VIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGK 359
             VIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKT+I++I G +TW+   LVI LACAGK
Sbjct:   301 VIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTNIAAIQGPATWLTLFLVIFLACAGK 360

Query:   360 IAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVM 419
             + GT++V+  + MP+REG+TLGLL+NTKGLVEMIVLNVGKDQKVLDDE+FA MV+VA+VM
Sbjct:   361 VIGTVIVAFFHGMPVREGITLGLLLNTKGLVEMIVLNVGKDQKVLDDETFATMVLVALVM 420

Query:   420 TGIITPIVTSIYKPARRFLPYKRRTIQKSKPDSEFRVLVCVHTPRNVPTIINLLEASHPT 479
             TG+ITPIVT +YKP ++ + YKRRTIQ++KPDSE RVLVCVHTPRNVPTIINLLEASHPT
Sbjct:   421 TGVITPIVTILYKPVKKSVSYKRRTIQQTKPDSELRVLVCVHTPRNVPTIINLLEASHPT 480

Query:   480 KRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHTGCV 539
             KRSPIC+YVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQH   V
Sbjct:   481 KRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAAFV 540

Query:   540 TVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLA 599
              VQPLTAISPYS+MHED+C+LAEDKRV+ IIIPFHK QTVDGGME+TNPA+R+VNQNLL 
Sbjct:   541 AVQPLTAISPYSTMHEDVCSLAEDKRVSFIIIPFHKQQTVDGGMESTNPAYRLVNQNLLE 600

Query:   600 NAPCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVM 659
             N+PCSVGILVDRGLNG+TRL +N V+  +AVLFFGGPDDREALAYAWRM++HPG  LTV+
Sbjct:   601 NSPCSVGILVDRGLNGATRLNSNTVSLQVAVLFFGGPDDREALAYAWRMAQHPGITLTVL 660

Query:   660 RFIAAE-EVEPAERQSPDQNGLTV-ETENDNQRQLDEEYINEFRMKIANDESVVYTEKLA 717
             RFI  E E + A  ++ + + L + + ++  QRQLD++YIN FR + A  ES+VY EKL 
Sbjct:   661 RFIHDEDEADTASTRATNDSDLKIPKMDHRKQRQLDDDYINLFRAENAEYESIVYIEKLV 720

Query:   718 NNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFAST 777
             +NGEET+AA+RSMD SHDLFIVGRG+G++SPLT GLTDWSECPELGAIGDLLASSDFA+T
Sbjct:   721 SNGEETVAAVRSMDSSHDLFIVGRGEGMSSPLTAGLTDWSECPELGAIGDLLASSDFAAT 780

Query:   778 VSVLVVQ 784
             VSVLVVQ
Sbjct:   781 VSVLVVQ 787

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006885 "regulation of pH" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR\|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2084370 CHX20 "cation/H+ exchanger 20" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2024578 CHX16 "cation/H+ exchanger 16" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2031968 CHX23 "cation/H+ exchanger 23" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060827 ATCHX13 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2166168 CHX24 "cation/H+ exchanger 24" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SIT5	CHX15_ARATH	No assigned EC number	0.7649	1.0	0.9549	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		784
PLN03159		832	PLN03159, PLN03159, cation/H(+) antiporter 15; Pro	0.0
pfam00999		370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	3e-67
COG0475		397	COG0475, KefB, Kef-type K+ transport systems, memb	4e-58
TIGR00932		273	TIGR00932, 2a37, transporter, monovalent cation:pr	1e-37
PRK03562		621	PRK03562, PRK03562, glutathione-regulated potassiu	4e-12
COG4651		408	COG4651, RosB, Kef-type K+ transport system, predi	3e-09
COG0025		429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	1e-08
PRK10669		558	PRK10669, PRK10669, putative cation:proton antipor	1e-04

>gnl\|CDD\|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional	Back alignment and domain information

 Score = 1411 bits (3653), Expect = 0.0
 Identities = 631/789 (79%), Positives = 712/789 (90%), Gaps = 5/789 (0%)

Query: 1   MATAAN-KTDETIVCYSPNMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVLVLKP 59
           M+T  N  T  ++VCY+P MITTNG+WQGDNPLD+SLPLFILQLTLVVVTTRLLV +LKP
Sbjct: 5   MSTGKNPSTASSVVCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKP 64

Query: 60  FRQPRVISEIIGGVLLGPSVLGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMD 119
           FRQPRVISEI+GGV+LGPSVLG++  FANTIFPLRSVMVLETMAN+GLLYFLFLVGVEMD
Sbjct: 65  FRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMD 124

Query: 120 ISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVTAFPV 179
           IS IRRTGKKALAIA+ GM LPF IG  FSFI H+ ++ ++QGTF+LFLGVALSVTAFPV
Sbjct: 125 ISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPV 184

Query: 180 LARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAF 239
           LARILAE+KLINTELGRIAMS+AL+NDMCAW+LLA AIAL END+++LASLWV+LS  AF
Sbjct: 185 LARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAF 244

Query: 240 VIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGL 299
           V+FC +VVRP I W+IRRTPEGE+FSEFY+CLILTGVMISGFITDAIGTHSVFGAFVFGL
Sbjct: 245 VLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGL 304

Query: 300 VIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGK 359
           VIPNGPLG+TLIEKLEDFVSGLLLPLFFAISGLKT+++ I G +TW + +LVII+A AGK
Sbjct: 305 VIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGK 364

Query: 360 IAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGKDQKVLDDESFAIMVIVAVVM 419
           I GT++++  Y MP REG+TLG LMNTKGLVEMIVLNVG+DQ+VLDDESFA+MV+VAV M
Sbjct: 365 IMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAM 424

Query: 420 TGIITPIVTSIYKPARRFLPYKRRTIQKSKPDSEFRVLVCVHTPRNVPTIINLLEASHPT 479
           T +ITP+VT +Y+PARR + YKRRTIQ+SK D+E R+LVCVHTPRNVPTIINLLEASHPT
Sbjct: 425 TALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPT 484

Query: 480 KRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHTGCV 539
           KRSPIC+YVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQH GCV
Sbjct: 485 KRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAGCV 544

Query: 540 TVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLA 599
           +VQPLTAISPYS+MHED+CNLAEDKRV+LIIIPFHK QTVDGGMEATNPAFR VNQN+LA
Sbjct: 545 SVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLA 604

Query: 600 NAPCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDREALAYAWRMSEHPGNNLTVM 659
           NAPCSVGILVDRGL+G+TRLA+NQV+H++AVLFFGGPDDREALAYAWRMSEHPG  LTVM
Sbjct: 605 NAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVM 664

Query: 660 RFIAAEEVEPAERQS----PDQNGLTVETENDNQRQLDEEYINEFRMKIANDESVVYTEK 715
           RFI  E+  P   Q      D    TVET+   +RQLDEEYINEFR + A +ES+VYTEK
Sbjct: 665 RFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEK 724

Query: 716 LANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFA 775
           + +NGEET+AAIRSMD +HDLFIVGRGQG+ SPLT GLTDWSECPELGAIGDLLASSDFA
Sbjct: 725 VVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFA 784

Query: 776 STVSVLVVQ 784
           +TVSVLVVQ
Sbjct: 785 ATVSVLVVQ 793

Length = 832

>gnl\|CDD\|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	Back alignment and domain information

>gnl\|CDD\|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>gnl\|CDD\|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>gnl\|CDD\|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|182633 PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		784
PLN03159		832	cation/H(+) antiporter 15; Provisional	100.0
KOG1650		769	consensus Predicted K+/H+-antiporter [Inorganic io	100.0
PRK03562		621	glutathione-regulated potassium-efflux system prot	100.0
PRK10669		558	putative cation:proton antiport protein; Provision	100.0
PRK03659		601	glutathione-regulated potassium-efflux system prot	100.0
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	100.0
PRK05326		562	potassium/proton antiporter; Reviewed	100.0
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	100.0
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	100.0
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	100.0
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.97
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.96
COG3263		574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.95
TIGR00840		559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.95
PRK11175		305	universal stress protein UspE; Provisional	99.88
KOG4505		467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.83
KOG1965		575	consensus Sodium/hydrogen exchanger protein [Inorg	99.82
PRK14853		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.73
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.5
TIGR00773		373	NhaA Na+/H+ antiporter NhaA. These proteins are me	99.44
KOG1966		670	consensus Sodium/hydrogen exchanger protein [Inorg	99.41
PRK15456		142	universal stress protein UspG; Provisional	99.4
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	99.38
PRK15005		144	universal stress protein F; Provisional	99.33
PRK09982		142	universal stress protein UspD; Provisional	99.25
PRK15118		144	universal stress global response regulator UspA; P	99.24
cd01987		124	USP_OKCHK USP domain is located between the N-term	99.21
PF00582		140	Usp: Universal stress protein family; InterPro: IP	99.12
PRK14856		438	nhaA pH-dependent sodium/proton antiporter; Provis	99.12
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	99.1
PRK10116		142	universal stress protein UspC; Provisional	99.09
PRK09560		389	nhaA pH-dependent sodium/proton antiporter; Review	99.08
PRK09982		142	universal stress protein UspD; Provisional	99.06
PRK15005		144	universal stress protein F; Provisional	99.02
PRK09561		388	nhaA pH-dependent sodium/proton antiporter; Review	99.02
PRK14855		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.01
PRK11175		305	universal stress protein UspE; Provisional	99.01
PRK14854		383	nhaA pH-dependent sodium/proton antiporter; Provis	99.01
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	98.97
PRK15456		142	universal stress protein UspG; Provisional	98.97
PRK10116		142	universal stress protein UspC; Provisional	98.95
PRK15118		144	universal stress global response regulator UspA; P	98.89
cd00293		130	USP_Like Usp: Universal stress protein family. The	98.88
cd01987		124	USP_OKCHK USP domain is located between the N-term	98.86
PF00582		140	Usp: Universal stress protein family; InterPro: IP	98.86
PF06965		378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	98.83
COG0589		154	UspA Universal stress protein UspA and related nuc	98.75
COG3004		390	NhaA Na+/H+ antiporter [Inorganic ion transport an	98.69
cd00293		130	USP_Like Usp: Universal stress protein family. The	98.43
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	98.24
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	98.08
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	98.07
COG0589		154	UspA Universal stress protein UspA and related nuc	98.05
PF05684		378	DUF819: Protein of unknown function (DUF819); Inte	98.02
COG0798		342	ACR3 Arsenite efflux pump ACR3 and related permeas	97.6
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	97.57
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	97.56
COG0385		319	Predicted Na+-dependent transporter [General funct	97.52
TIGR00698		335	conserved hypothetical integral membrane protein.	97.48
PF03812		314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.45
PRK10490		895	sensor protein KdpD; Provisional	97.16
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	97.1
TIGR00832		328	acr3 arsenical-resistance protein. The first prote	96.93
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	96.89
PF03390		414	2HCT: 2-hydroxycarboxylate transporter family; Int	96.83
TIGR00793		314	kdgT 2-keto-3-deoxygluconate transporter. This fam	96.83
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	96.79
COG3180		352	AbrB Putative ammonia monooxygenase [General funct	96.52
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	96.31
PRK03562		621	glutathione-regulated potassium-efflux system prot	96.27
PF05145		318	AmoA: Putative ammonia monooxygenase; InterPro: IP	96.2
COG3493		438	CitS Na+/citrate symporter [Energy production and	96.15
PF01758		187	SBF: Sodium Bile acid symporter family; InterPro:	96.13
PRK10490		895	sensor protein KdpD; Provisional	96.11
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	95.99
PRK05274		326	2-keto-3-deoxygluconate permease; Provisional	95.93
PRK10669		558	putative cation:proton antiport protein; Provision	95.7
PRK03659		601	glutathione-regulated potassium-efflux system prot	95.66
PRK03818		552	putative transporter; Validated	95.6
PF06826		169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	95.59
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	95.49
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	95.45
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	95.38
PRK05326		562	potassium/proton antiporter; Reviewed	95.25
TIGR00783		347	ccs citrate carrier protein, CCS family. These pro	95.22
TIGR00841		286	bass bile acid transporter. Functionally character	94.93
COG2855		334	Predicted membrane protein [Function unknown]	94.66
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	94.63
COG2855		334	Predicted membrane protein [Function unknown]	94.33
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	94.31
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	94.27
TIGR00698		335	conserved hypothetical integral membrane protein.	94.18
PLN03159		832	cation/H(+) antiporter 15; Provisional	93.77
TIGR01625		154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	93.76
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	93.15
PRK04972		558	putative transporter; Provisional	93.13
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	92.51
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	92.36
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	91.12
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	90.68
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	90.6
PF05145		318	AmoA: Putative ammonia monooxygenase; InterPro: IP	90.44
cd01984		86	AANH_like Adenine nucleotide alpha hydrolases supe	90.41
TIGR00808		254	malonate_madM malonate transporter, MadM subunit.	90.41
COG1346		230	LrgB Putative effector of murein hydrolase [Cell e	90.29
PRK04972		558	putative transporter; Provisional	88.64
COG2985		544	Predicted permease [General function prediction on	87.33
PRK03818		552	putative transporter; Validated	87.26
PRK04288		232	antiholin-like protein LrgB; Provisional	87.23
COG1346		230	LrgB Putative effector of murein hydrolase [Cell e	86.94
TIGR02432		189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	86.91
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	86.85
PF01171		182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	86.74
PRK03359		256	putative electron transfer flavoprotein FixA; Revi	85.21
PF03547		385	Mem_trans: Membrane transport protein; InterPro: I	84.5
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	84.24
PRK04288		232	antiholin-like protein LrgB; Provisional	84.12
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	84.01
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	82.94
COG3329		372	Predicted permease [General function prediction on	82.42
COG1646		240	Predicted phosphate-binding enzymes, TIM-barrel fo	81.73
PF01012		164	ETF: Electron transfer flavoprotein domain; InterP	81.52
PRK12342		254	hypothetical protein; Provisional	80.89
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	80.82
PRK10711		231	hypothetical protein; Provisional	80.57

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

Probab=100.00  E-value=3.1e-140  Score=1248.35  Aligned_cols=784  Identities=80%  Similarity=1.277  Sum_probs=704.6

Q ss_pred             CccccCCCCCccc-ccCCcccCCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHhHcccCCChhHHHHHHHHhhcccc
Q 043446            1 MATAANKTDETIV-CYSPNMITTNGVWQGDNPLDYSLPLFILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVLLGPSV   79 (784)
Q Consensus         1 ~~~~~~~~~~~~~-c~~~~~~~s~g~~~~~~~l~~~l~~~l~~l~lil~~~~l~~~l~~rl~~P~iv~~ilaGiilGP~~   79 (784)
                      |.+.-|++++..+ |+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||.++|||++|+++||++
T Consensus         5 ~~~~~~~~~~~~~~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~   84 (832)
T PLN03159          5 MSTGKNPSTASSVVCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSV   84 (832)
T ss_pred             cCCCCCCCCCCCcccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhh
Confidence            4577899888886 996557899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccccccCcccHHHHHHHHHHHHHHHHHHHhhccChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 043446           80 LGRNTAFANTIFPLRSVMVLETMANVGLLYFLFLVGVEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGM  159 (784)
Q Consensus        80 lg~~~~~~~~lfp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~  159 (784)
                      +|+++.+.+.+||.++.+.++.++++|++++||.+|+|+|++.+||++|+++.+++.++++|+++++.+++++...+.+.
T Consensus        85 lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~  164 (832)
T PLN03159         85 LGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNV  164 (832)
T ss_pred             hCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            99998888889998888899999999999999999999999999999999999999999999999998888774322122


Q ss_pred             chhHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Q 043446          160 NQGTFVLFLGVALSVTAFPVLARILAELKLINTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAF  239 (784)
Q Consensus       160 ~~~~~al~lg~~ls~Ts~~vv~~il~el~~~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (784)
                      .....++++|+++|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+...+......++.++..+++
T Consensus       165 ~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f  244 (832)
T PLN03159        165 HQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAF  244 (832)
T ss_pred             chhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence            22356789999999999999999999999999999999999999999999999998877665443334456777777888


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCcchhHHHHHHHHHHH
Q 043446          240 VIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLIEKLEDFVS  319 (784)
Q Consensus       240 ~~~~~~v~~~~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~~~~~~~l~~~l~~~~~  319 (784)
                      ++++.+++||++.|+.|+.+++++.++.++.++++++++++++++.+|+|+++|||++|+++|+++.++++.+|++++++
T Consensus       245 ~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~  324 (832)
T PLN03159        245 VLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVS  324 (832)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHH
Confidence            88888999999999999998888788999999999999999999999999999999999999998889999999999999


Q ss_pred             hhhhHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHhhc
Q 043446          320 GLLLPLFFAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMYQMPIREGVTLGLLMNTKGLVEMIVLNVGK  399 (784)
Q Consensus       320 ~~~~plfF~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~rG~~~l~~~~~~~  399 (784)
                      ++|+|+||+++|+++|+..+.++..|..+++++++++++|+++++++++++|+|++|++.+|++|++||+++++++++++
T Consensus       325 ~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~  404 (832)
T PLN03159        325 GLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGR  404 (832)
T ss_pred             HHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            99999999999999999888765566667777888899999999999999999999999999999999999999999999


Q ss_pred             cCCcCChhhHHHHHHHHHHHHHhHHHHHHhhccccccccccccccccCCCCCCCceEEEEeeCCCChhHHHHHHHhhCCC
Q 043446          400 DQKVLDDESFAIMVIVAVVMTGIITPIVTSIYKPARRFLPYKRRTIQKSKPDSEFRVLVCVHTPRNVPTIINLLEASHPT  479 (784)
Q Consensus       400 ~~~~i~~~~~~~lv~~~vv~t~i~~pl~~~l~~~~~~~~~~~~~~i~~~~~~~e~riLv~v~~~~~~~~li~l~~~l~~~  479 (784)
                      +.|+++++.|++++++++++|.+++|++.++|+|++|+..|++|++|+.++++|+|+|+|+|++++++++++|++.++++
T Consensus       405 ~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t  484 (832)
T PLN03159        405 DQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPT  484 (832)
T ss_pred             hcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEEeeeecCCCcchhhccccccCCCCccccccchhhHHHHHHHHhhHccCceEEEEEEEecCCCChHHHHHH
Q 043446          480 KRSPICVYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHTGCVTVQPLTAISPYSSMHEDICN  559 (784)
Q Consensus       480 ~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~  559 (784)
                      +++|.++|++||+|+++|+++.++.|+.+++..+..++...++|++.++|+.|++++++++++++++++|+++||+|||+
T Consensus       485 ~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~  564 (832)
T PLN03159        485 KRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCN  564 (832)
T ss_pred             CCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHH
Confidence            99999999999999999999999999876543332222235579999999999975258999999999999999999999


Q ss_pred             HHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCceEEEecCCCCCCccccccCcceeEEEeccCCcchH
Q 043446          560 LAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCSVGILVDRGLNGSTRLAANQVTHNIAVLFFGGPDDR  639 (784)
Q Consensus       560 ~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~V~ilv~rg~~~~~~~~~~~~~~~I~v~~~gg~~~~  639 (784)
                      .|+|+++++||+||||+|+.||.+++.+..+|.+|++|+++|||||+|+||||..+.++.......+||+++|.||||||
T Consensus       565 ~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDR  644 (832)
T PLN03159        565 LAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDR  644 (832)
T ss_pred             HHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchH
Confidence            99999999999999999999999888888999999999999999999999999764333334455779999999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEeeecCCcCcccC---CCCCCCC-CcccccchhhhhhHHHHHHHHHhhccCCCceEEEEE
Q 043446          640 EALAYAWRMSEHPGNNLTVMRFIAAEEVEPAER---QSPDQNG-LTVETENDNQRQLDEEYINEFRMKIANDESVVYTEK  715 (784)
Q Consensus       640 ~al~~a~~la~~~~~~ltv~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~e~  715 (784)
                      |||+||.|||+|+++++||+||++.++.....+   ...++.. ++..+..++|+++||++++||++++..++++.|.|+
T Consensus       645 EALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~  724 (832)
T PLN03159        645 EALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEK  724 (832)
T ss_pred             HHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEE
Confidence            999999999999999999999997543211100   0111111 222222267889999999999999988899999999


Q ss_pred             ecCChHHHHHHHHhccCCccEEEEcccCCCCCccccCcCccCCCCccccchhhhhcCCCCCcccEEEEC
Q 043446          716 LANNGEETLAAIRSMDHSHDLFIVGRGQGVTSPLTDGLTDWSECPELGAIGDLLASSDFASTVSVLVVQ  784 (784)
Q Consensus       716 ~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~elG~igd~las~d~~~~~svLvvq  784 (784)
                      .|+||.|++.++|+++++|||+||||+|+.+||+|+||+||+||||||+|||+|||+||.+++||||||
T Consensus       725 ~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQ  793 (832)
T PLN03159        725 VVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQ  793 (832)
T ss_pred             ecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEE
Confidence            999999999999999989999999999887799999999999999999999999999999999999999

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>TIGR00773 NhaA Na+/H+ antiporter NhaA	Back alignment and domain information

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species	Back alignment and domain information

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>COG0385 Predicted Na+-dependent transporter [General function prediction only]	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>TIGR00832 acr3 arsenical-resistance protein	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom	Back alignment and domain information

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase	Back alignment and domain information

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]	Back alignment and domain information

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>PRK05274 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>TIGR00783 ccs citrate carrier protein, CCS family	Back alignment and domain information

>TIGR00841 bass bile acid transporter	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase	Back alignment and domain information

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)	Back alignment and domain information

>TIGR00808 malonate_madM malonate transporter, MadM subunit	Back alignment and domain information

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>COG2985 Predicted permease [General function prediction only]	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>PRK04288 antiholin-like protein LrgB; Provisional	Back alignment and domain information

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]	Back alignment and domain information

>PRK03359 putative electron transfer flavoprotein FixA; Reviewed	Back alignment and domain information

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea	Back alignment and domain information

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>PRK04288 antiholin-like protein LrgB; Provisional	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3329 Predicted permease [General function prediction only]	Back alignment and domain information

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	Back alignment and domain information

>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems	Back alignment and domain information

>PRK12342 hypothetical protein; Provisional	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10711 hypothetical protein; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		784
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1zcd_A		388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 49.9 bits (118), Expect = 3e-06
 Identities = 85/627 (13%), Positives = 173/627 (27%), Gaps = 186/627 (29%)

Query: 32  LDYSLPLF-------ILQLTLVVVTTRLLVLVLKPFRQPRVISEIIGGVL---------- 74
            D    +        I+     V  T  L   L   +Q  ++ + +  VL          
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINYKFLMSP 97

Query: 75  -----LGPS------VLGRNTAF-ANTIFPLRSVMVLETMANV--GLL-----YFLFLVG 115
                  PS      +  R+  +  N +F   +V  L+    +   LL       + + G
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 116 VEMDISAIRRTGKKALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGVALSVT 175
             +       +GK  +A+ V           C S+ +  K   M+   F L L    S  
Sbjct: 158 --V-----LGSGKTWVALDV-----------CLSYKVQCK---MDFKIFWLNLKNCNSPE 196

Query: 176 A-FPVLARILAELKLINTELGRIAMSSAL-INDMCAWVLLAFAIALGENDTSTLASLW-- 231
               +L ++L ++    T     + +  L I+ + A +         EN    L ++   
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 232 -VILSGAAFVIFCVFVVRPAICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHS 290
                  AF + C             +             L+ T       +TD +    
Sbjct: 257 KAW---NAFNLSC-------------KI------------LLTTR---FKQVTDFLS--- 282

Query: 291 VFGAFVFGLVIPNGPLGLTLIEKLEDFVSGLLLPLFFAISGLKTDISSIHGTSTWMITLL 350
              A    + + +  + LT  E     +  L          L  ++ + +          
Sbjct: 283 --AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----PQDLPREVLTTN--------PR 328

Query: 351 VIILACAGKIAGTLLVSLMYQMPIR-EGVTLGLLMNTKGLVEMI-----VLNVGKDQKVL 404
            +          +++   +       +       +N   L  +I     VL   + +K+ 
Sbjct: 329 RL----------SIIAESIRDGLATWDNW---KHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 405 DDESFAIMVIVAVVMTGI-ITPIVTSI------YKPARRFLP--YKRRTIQKSKPDSEFR 455
           D    ++            I  I+ S+             +   +K   ++K   +S   
Sbjct: 376 DR--LSVF------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 456 V----LVCVHTPRNVPT----II---NLLEASHPTKRSPICV--YVL-----HL--VELT 495
           +    L       N       I+   N+ +        P  +  Y       HL  +E  
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 496 GRASAM--------LIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHTGCVTVQPLTAI 547
            R +           +    R     A N + +  +  +   + Y+ +        +   
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDS-TAWNASGSILN-TLQQLKFYKPY--------ICDN 537

Query: 548 SP-YSSMHEDICNLAEDKRVALIIIPF 573
            P Y  +   I +        LI   +
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKY 564

PyMOL of 1vt4

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A Length = 388	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		784
1zcd_A		388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	99.89
3mt0_A		290	Uncharacterized protein PA1789; structural genomic	99.88
3olq_A		319	Universal stress protein E; structural genomics, P	99.87
3cis_A		309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.87
3loq_A		294	Universal stress protein; structural genomics, PSI	99.86
3ab8_A		268	Putative uncharacterized protein TTHA0350; tandem-	99.85
1mjh_A		162	Protein (ATP-binding domain of protein MJ0577); hy	99.36
3hgm_A		147	Universal stress protein TEAD; rossman fold, signa	99.35
3s3t_A		146	Nucleotide-binding protein, universal stress PROT	99.34
2dum_A		170	Hypothetical protein PH0823; conserved hypothetica	99.34
3fdx_A		143	Putative filament protein / universal stress PROT;	99.32
3tnj_A		150	Universal stress protein (USP); structural genomic	99.29
3dlo_A		155	Universal stress protein; unknown function, struct	99.29
1tq8_A		163	Hypothetical protein RV1636; MTCY01B2.28, structur	99.28
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	99.25
2z08_A		137	Universal stress protein family; uncharacterized c	99.25
3fg9_A		156	Protein of universal stress protein USPA family; A	99.24
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	99.19
3dlo_A		155	Universal stress protein; unknown function, struct	99.18
1jmv_A		141	USPA, universal stress protein A; chaperone; 1.85A	99.17
3s3t_A		146	Nucleotide-binding protein, universal stress PROT	99.16
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	99.13
3hgm_A		147	Universal stress protein TEAD; rossman fold, signa	99.13
1mjh_A		162	Protein (ATP-binding domain of protein MJ0577); hy	99.04
3fg9_A		156	Protein of universal stress protein USPA family; A	99.03
3tnj_A		150	Universal stress protein (USP); structural genomic	99.01
2z08_A		137	Universal stress protein family; uncharacterized c	99.01
3fdx_A		143	Putative filament protein / universal stress PROT;	99.0
1q77_A		138	Hypothetical protein AQ_178; structural genomics,	99.0
1tq8_A		163	Hypothetical protein RV1636; MTCY01B2.28, structur	99.0
3mt0_A		290	Uncharacterized protein PA1789; structural genomic	99.0
2dum_A		170	Hypothetical protein PH0823; conserved hypothetica	98.98
3olq_A		319	Universal stress protein E; structural genomics, P	98.89
1jmv_A		141	USPA, universal stress protein A; chaperone; 1.85A	98.84
3loq_A		294	Universal stress protein; structural genomics, PSI	98.82
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	98.79
3ab8_A		268	Putative uncharacterized protein TTHA0350; tandem-	98.78
3cis_A		309	Uncharacterized protein; alpha/beta hydrolase, ATP	98.75
1q77_A		138	Hypothetical protein AQ_178; structural genomics,	98.72
3zux_A		332	Transporter, ASBTNM; transport protein, membrane p	97.8
3g40_A		294	Na-K-CL cotransporter; alpha/beta fold 10-stranded	97.4
3a2k_A		464	TRNA(Ile)-lysidine synthase; ligase, pseudo-knot,	80.02

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A	Back alignment and structure

Probab=99.89  E-value=1.5e-23  Score=225.55  Aligned_cols=302  Identities=18%  Similarity=0.189  Sum_probs=216.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHH----Hhchh--hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHH
Q 043446           97 MVLETMANVGLLYFLFLVGVEMDISAI----RRTGK--KALAIAVGGMTLPFVIGGCFSFILHKKNQGMNQGTFVLFLGV  170 (784)
Q Consensus        97 ~~l~~l~~igl~~llF~~Gle~d~~~l----~~~~~--~~~~ia~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~lg~  170 (784)
                      .....+.+-.+.++||.+|+|+|.+.+    ++.+|  .....++.|+++|+++..     .  ++.+.   ..+.....
T Consensus        58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~-----~--~~~~~---~~~~~gw~  127 (388)
T 1zcd_A           58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL-----A--FNYAD---PITREGWA  127 (388)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG-----G--GCCSS---TTHHHHTS
T ss_pred             cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH-----H--HhcCC---hhhhhhhH
Confidence            356778888999999999999999877    55444  478889999999987732     1  11111   23556667


Q ss_pred             HHhhccHHHHHHHHHhcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 043446          171 ALSVTAFPVLARILAELKL-INTELGRIAMSSALINDMCAWVLLAFAIALGENDTSTLASLWVILSGAAFVIFCVFVVRP  249 (784)
Q Consensus       171 ~ls~Ts~~vv~~il~el~~-~~s~~g~l~l~~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  249 (784)
                      +.+.||.+....++..++. .++..++.+++.+++||+.+|++++++..   .+ ..  .. .+...+++.+..      
T Consensus       128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~-~~--~~-~l~~~~~~~~~~------  194 (388)
T 1zcd_A          128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND-LS--MA-SLGVAAVAIAVL------  194 (388)
T ss_dssp             SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC-CC--HH-HHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC-cc--HH-HHHHHHHHHHHH------
Confidence            7777999999999999754 56777799999999999999999997742   22 11  11 111111111111      


Q ss_pred             HHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-C----cchhHHHHHHHHHHHhhhhH
Q 043446          250 AICWMIRRTPEGESFSEFYVCLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-G----PLGLTLIEKLEDFVSGLLLP  324 (784)
Q Consensus       250 ~~~~l~~~~~~~~~~~e~~~~~~l~~~l~~~~~a~~~G~~~~lgaf~aGl~l~~-~----~~~~~l~~~l~~~~~~~~~p  324 (784)
                         +..+|...    +....+..+.  +.+.+.++..|+|+.+|+|++|+++|. .    +..++++++++++++.+++|
T Consensus       195 ---~~l~r~~v----~~~~~y~~lg--l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilP  265 (388)
T 1zcd_A          195 ---AVLNLCGA----RRTGVYILVG--VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILP  265 (388)
T ss_dssp             ---HHHHHTTC----CCTHHHHHHH--HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHH
T ss_pred             ---HHHHHhcc----hhHHHHHHHH--HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence               22233211    1222333332  244566799999999999999999998 3    45788999999999899999


Q ss_pred             HH-HHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCchhHHHHHHHhcchhHHHHH
Q 043446          325 LF-FAISGLKTDISSIHGTSTWMITLLVIILACAGKIAGTLLVSLMY----------QMPIREGVTLGLLMNTKGLVEMI  393 (784)
Q Consensus       325 lf-F~~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~rG~~~l~  393 (784)
                      +| |+..|.++|......... ...+.+++..+++|++|++..++..          |++|+|...+|++++.+++++++
T Consensus       266 lFaFanaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~  344 (388)
T 1zcd_A          266 LFAFANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIF  344 (388)
T ss_dssp             HHHHHHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHH
T ss_pred             HHHHHhcCeeecccchhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHH
Confidence            99 999999999753322111 1223445556899999966666666          89999999999999999999999


Q ss_pred             HHHhhccCCc--CChhhHHHHHHHHHHHHHhHHHHHHhhc
Q 043446          394 VLNVGKDQKV--LDDESFAIMVIVAVVMTGIITPIVTSIY  431 (784)
Q Consensus       394 ~~~~~~~~~~--i~~~~~~~lv~~~vv~t~i~~pl~~~l~  431 (784)
                      +++.+++.+.  +.++.+..+++++++++.+.+.++++.+
T Consensus       345 Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~  384 (388)
T 1zcd_A          345 IASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL  384 (388)
T ss_dssp             HHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred             HHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998876  3566788887888776666665555433

PyMOL of 1zcd

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}	Back alignment and structure

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}	Back alignment and structure

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*	Back alignment and structure

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4	Back alignment and structure

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0	Back alignment and structure

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0	Back alignment and structure

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*	Back alignment and structure

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*	Back alignment and structure

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*	Back alignment and structure

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4	Back alignment and structure

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4	Back alignment and structure

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A	Back alignment and structure

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}	Back alignment and structure

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}	Back alignment and structure

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*	Back alignment and structure

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4	Back alignment and structure

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0	Back alignment and structure

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}	Back alignment and structure

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0	Back alignment and structure

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4	Back alignment and structure

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}	Back alignment and structure

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*	Back alignment and structure

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A	Back alignment and structure

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*	Back alignment and structure

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4	Back alignment and structure

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4	Back alignment and structure

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}	Back alignment and structure

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}	Back alignment and structure

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4	Back alignment and structure

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*	Back alignment and structure

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*	Back alignment and structure

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4	Back alignment and structure

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*	Back alignment and structure

>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}	Back alignment and structure

>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		784
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.48
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.4
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	99.25
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	99.25
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	99.19
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.15
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.13
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.95
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	98.95
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.87
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	98.87
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	98.44

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.48  E-value=1e-13  Score=130.76  Aligned_cols=146  Identities=14%  Similarity=0.169  Sum_probs=100.0

Q ss_pred             ceEEEEeeCCCChhHHHHHHHhhCCCCCCCcEEEEEEeeeecCCCcchhhcccccc-----CCCCccc----cccchhhH
Q 043446          454 FRVLVCVHTPRNVPTIINLLEASHPTKRSPICVYVLHLVELTGRASAMLIVHNTRK-----SGRPALN----RTQAQSDH  524 (784)
Q Consensus       454 ~riLv~v~~~~~~~~li~l~~~l~~~~~~~~~v~~Lhlvel~~~~~~~~~~~~~~~-----~~~~~~~----~~~~~~~~  524 (784)
                      .|||+|++.++..+.+++.+..++  +..+.+++++|+++................     ...+...    +..++.++
T Consensus         4 ~~ILvavD~s~~s~~al~~a~~la--~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (160)
T d1mjha_           4 KKILYPTDFSETAEIALKHVKAFK--TLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN   81 (160)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTC--CSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHHHH--HhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999998  456789999999976543322111000000     0000000    00111222


Q ss_pred             HHHHHHHhhHccCceEEEEEEEecCCCChHHHHHHHHHhcCccEEEEccccccccCCcccccChhHHHHHHHhhccCCCc
Q 043446          525 IINAFENYEQHTGCVTVQPLTAISPYSSMHEDICNLAEDKRVALIIIPFHKHQTVDGGMEATNPAFRMVNQNLLANAPCS  604 (784)
Q Consensus       525 i~~a~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~~~~~dlIv~g~h~~~~~~~~~~~~~~~~~~~~~~vl~~apc~  604 (784)
                      .++.+.....+ .++++++....+   ++.+.|+++|++.++|+||||+|++....+.+      +||++++|++++|||
T Consensus        82 ~l~~~~~~~~~-~gv~~~~~~~~G---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~GS~a~~vl~~s~~p  151 (160)
T d1mjha_          82 KMENIKKELED-VGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKSNKP  151 (160)
T ss_dssp             HHHHHHHHHHH-TTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHh-cCCeEEEEEEec---cHHHHHhhhhhccccceEEeccCCCCcccccc------cCcHHHHHHhcCCCC
Confidence            33333222233 688999988887   89999999999999999999999886655554      899999999999999


Q ss_pred             eEEEecC
Q 043446          605 VGILVDR  611 (784)
Q Consensus       605 V~ilv~r  611 (784)
                      |.|+.++
T Consensus       152 VlvV~~~  158 (160)
T d1mjha_         152 VLVVKRK  158 (160)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9997433

PyMOL of d1mjha_

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure