Citrus Sinensis ID: 043459

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
MSCEYMKSNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPNGSISLSEVPNELSQNKMFMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQLPLVPIQET
cccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccEEEcccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHHHHcccHHHcccEEEEcccccHHHHHHHccccccHHHHccEEEEccccccHHHHcccccccccccccccccccccccc
cccEEEEccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccccccEEEEEcccccHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHccHHHHccEEEcccccHHHHcHHHccHHHccHHHcccccccccccc
msceymksnideKEETKIRLMRALVEkqdpsskevddptLRRFLRARDLDVEKASGMFLKYLKWRQtfvpngsislsevpnelsqnkmfmqgfdkkgrpiATVLGARHFqnklggleeFKRFVVYILDKIcsrmppgqekFVVIGdlkgwgysnSDLRAYLGALSILQdyyperlgkLFIVHAPYIFMTVWKIVYpfidnntkkKIVFVQDKKLKSTLLEEidesqipeiyggqlplvpiqet
msceymksnidekeeTKIRLMRAlvekqdpsskevddptlrrflrardldveKASGMFLKYLKWRQTFVPNGSISLSEVPNELSQNKMFMQGFDKKGRPIATVLGARHFqnklggleeFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEeidesqipeiyggqlplvpiqet
MSCEYMKSNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPNGSISLSEVPNELSQNKMFMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQLPLVPIQET
*****************************************RFLRARDLDVEKASGMFLKYLKWRQTFVPNGSISL***********MFMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQLPL******
****************KIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPNGSISLSEVPNELSQNKMFMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQLPLVPIQE*
********NIDEKEETKIRLMRALV***********DPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPNGSISLSEVPNELSQNKMFMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQLPLVPIQET
*SCEYMKSNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPNGSISLSEVPNELSQNKMFMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQLPLV*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSCEYMKSNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPNGSISLSEVPNELSQNKMFMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQLPLVPIQET
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query243 2.2.26 [Sep-21-2011]
Q55CU8364 Random slug protein 5 OS= no no 0.930 0.620 0.305 4e-21
P33324310 CRAL-TRIO domain-containi yes no 0.868 0.680 0.313 4e-21
P53989302 SEC14 cytosolic factor OS yes no 0.921 0.741 0.309 1e-19
P24280304 SEC14 cytosolic factor OS no no 0.917 0.733 0.325 2e-19
P24859301 SEC14 cytosolic factor OS yes no 0.921 0.744 0.309 4e-19
Q10137286 Sec14 cytosolic factor OS yes no 0.901 0.765 0.313 2e-18
Q75DK1308 SEC14 cytosolic factor OS yes no 0.897 0.707 0.306 1e-17
Q9M0R2 668 Patellin-5 OS=Arabidopsis no no 0.913 0.332 0.313 2e-17
P46250301 SEC14 cytosolic factor OS N/A no 0.921 0.744 0.297 3e-17
Q7PWB1 684 Protein real-time OS=Anop yes no 0.917 0.326 0.282 4e-17
>sp|Q55CU8|RSC5_DICDI Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1 Back     alignment and function desciption
 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 10/236 (4%)

Query: 9   NIDEKEETKIRLMRA-LVEKQDPSSKE-VDDPTLRRFLRARDLDVEKASGMFLKYLKWRQ 66
           N++EK+    + +++   +  DP+      D    R+LRAR+  V K+  M    L+WR+
Sbjct: 43  NLNEKQLEAFKEIKSNFSDLTDPTDIAFCTDMCFLRYLRARNYIVSKSEKMLRDTLEWRK 102

Query: 67  TFVPNGSISLSEVPNELSQNKMFMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYI 126
            F P       ++    S   +++   DKKGRPI   +        +    +FK  +VY 
Sbjct: 103 KFRPQDIQLGGDIREIGSAGCVYVNKRDKKGRPIIFAVPRNDTLKNVPSELKFKN-LVYW 161

Query: 127 LDKICSRM--PPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAP 184
           L++  SRM  P G E+F  I D K +G  N D++  L A+  L D+ PER+G+   +  P
Sbjct: 162 LEQGFSRMDEPKGIEQFCFIVDYKDFGSGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPP 221

Query: 185 YIFMTVWKIVYPFIDNNTKKKIVFVQDKKLK-----STLLEEIDESQIPEIYGGQL 235
            +F   WKI+ PF++  T  K+ F+  KK+      + LLE +D   + +  GG L
Sbjct: 222 ALFWFAWKIISPFLNEVTLSKVRFINSKKVDGKRTFAELLEYVDIENLEQNLGGNL 277

Dictyostelium discoideum (taxid: 44689)
>sp|P33324|YKJ1_YEAST CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL091C PE=1 SV=2 Back     alignment and function description
>sp|P53989|SEC14_CANGA SEC14 cytosolic factor OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC14 PE=3 SV=1 Back     alignment and function description
>sp|P24280|SEC14_YEAST SEC14 cytosolic factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC14 PE=1 SV=3 Back     alignment and function description
>sp|P24859|SEC14_KLULA SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|Q10137|SEC14_SCHPO Sec14 cytosolic factor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec14 PE=4 SV=1 Back     alignment and function description
>sp|Q75DK1|SEC14_ASHGO SEC14 cytosolic factor OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|Q9M0R2|PATL5_ARATH Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2 Back     alignment and function description
>sp|P46250|SEC14_CANAL SEC14 cytosolic factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC14 PE=2 SV=1 Back     alignment and function description
>sp|Q7PWB1|RETM_ANOGA Protein real-time OS=Anopheles gambiae GN=retm PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
225456509256 PREDICTED: random slug protein 5 [Vitis 0.958 0.910 0.761 1e-105
224129280231 predicted protein [Populus trichocarpa] 0.942 0.991 0.765 1e-102
351720699256 polyphosphoinositide binding protein Ssh 0.950 0.902 0.767 1e-102
17226662247 polyphosphoinositide binding protein [Go 0.995 0.979 0.715 1e-101
255637499256 unknown [Glycine max] 0.950 0.902 0.762 1e-101
317106613253 JHL07K02.10 [Jatropha curcas] 0.942 0.905 0.760 1e-100
357464921272 Sec14 cytosolic factor [Medicago truncat 0.950 0.849 0.732 1e-100
388516911272 unknown [Medicago truncatula] 0.950 0.849 0.728 2e-99
217074166272 unknown [Medicago truncatula] 0.950 0.849 0.724 1e-98
356527579248 PREDICTED: random slug protein 5-like [G 0.975 0.955 0.739 3e-98
>gi|225456509|ref|XP_002284696.1| PREDICTED: random slug protein 5 [Vitis vinifera] gi|147860850|emb|CAN83160.1| hypothetical protein VITISV_022555 [Vitis vinifera] gi|297734520|emb|CBI15767.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/239 (76%), Positives = 212/239 (88%), Gaps = 6/239 (2%)

Query: 10  IDEKEETKIRLMRALVEKQDPSSKE-----VDDPTLRRFLRARDLDVEKASGMFLKYLKW 64
           I+E E+TK+ LMR  VE QDPSS++      DD  +RRFLRARDLDVEKAS +FL+YLKW
Sbjct: 19  INEMEQTKVSLMRTYVESQDPSSRDPSSQKADDLMIRRFLRARDLDVEKASALFLRYLKW 78

Query: 65  RQTFVPNGSISLSEVPNELSQNKMFMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVV 124
           RQTFVPNGSISLS+V NE++QNKMF+QG DK+GRPI+ VLGA+HFQ + G L+EFKRF+V
Sbjct: 79  RQTFVPNGSISLSQVRNEVAQNKMFLQGLDKQGRPISVVLGAKHFQYQ-GSLDEFKRFLV 137

Query: 125 YILDKICSRMPPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAP 184
           Y  DKIC+RMPPGQEKFVVIGDL+GWGYSNSD+RAYLGALSILQDYYPERLGKLFI+HAP
Sbjct: 138 YAFDKICTRMPPGQEKFVVIGDLEGWGYSNSDMRAYLGALSILQDYYPERLGKLFIIHAP 197

Query: 185 YIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQLPLVPIQET 243
           YIFM +WKIVYPFID NTKKKIV V+  KL+STLLEEIDESQ+P+IYGG+LPLVPIQ++
Sbjct: 198 YIFMAIWKIVYPFIDKNTKKKIVLVEKTKLRSTLLEEIDESQLPQIYGGKLPLVPIQDS 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224129280|ref|XP_002328935.1| predicted protein [Populus trichocarpa] gi|222839365|gb|EEE77702.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351720699|ref|NP_001237441.1| polyphosphoinositide binding protein Ssh2p [Glycine max] gi|2739046|gb|AAB94599.1| polyphosphoinositide binding protein Ssh2p [Glycine max] Back     alignment and taxonomy information
>gi|17226662|gb|AAL37896.1|AF443118_1 polyphosphoinositide binding protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255637499|gb|ACU19076.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|317106613|dbj|BAJ53120.1| JHL07K02.10 [Jatropha curcas] Back     alignment and taxonomy information
>gi|357464921|ref|XP_003602742.1| Sec14 cytosolic factor [Medicago truncatula] gi|355491790|gb|AES72993.1| Sec14 cytosolic factor [Medicago truncatula] gi|388521721|gb|AFK48922.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388516911|gb|AFK46517.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|217074166|gb|ACJ85443.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356527579|ref|XP_003532386.1| PREDICTED: random slug protein 5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query243
TAIR|locus:2198135255 AT1G01630 "AT1G01630" [Arabido 0.954 0.909 0.695 9.9e-87
TAIR|locus:2006732252 AT1G14820 "AT1G14820" [Arabido 0.950 0.916 0.420 1.2e-40
DICTYBASE|DDB_G0275959247 DDB_G0275959 "cellular retinal 0.901 0.886 0.334 3.5e-27
TAIR|locus:2115320294 AT4G36640 [Arabidopsis thalian 0.925 0.765 0.320 6.6e-26
TAIR|locus:2025202296 AT1G75170 "AT1G75170" [Arabido 0.888 0.729 0.337 1.1e-25
TAIR|locus:2138606301 AT4G08690 "AT4G08690" [Arabido 0.925 0.747 0.300 1.2e-24
SGD|S000001574310 YKL091C "Putative homolog of S 0.473 0.370 0.377 1.7e-24
TAIR|locus:2015066314 AT1G22180 "AT1G22180" [Arabido 0.930 0.719 0.316 1.8e-23
DICTYBASE|DDB_G0269182364 rsc5 "cellular retinaldehyde-b 0.925 0.618 0.324 2.3e-23
TAIR|locus:2161942263 AT5G63060 "AT5G63060" [Arabido 0.662 0.612 0.329 1e-22
TAIR|locus:2198135 AT1G01630 "AT1G01630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 162/233 (69%), Positives = 193/233 (82%)

Query:    11 DEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVP 70
             DE E +K+ +MRAL ++QDP +KEVDD  +RRFLRARDLD+EKAS MFL YL W+++ +P
Sbjct:    24 DEIERSKVGIMRALCDRQDPETKEVDDLMIRRFLRARDLDIEKASTMFLNYLTWKRSMLP 83

Query:    71 NGSISLSEVPNELSQNKMFMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKI 130
              G I  +E+ N+LS NKM MQG DK GRPIA  +G RH  +K G  +EFKRFVVY L+KI
Sbjct:    84 KGHIPEAEIANDLSHNKMCMQGHDKMGRPIAVAIGNRHNPSK-GNPDEFKRFVVYTLEKI 142

Query:   131 CSRMPPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTV 190
             C+RMP GQEKFV IGDL+GWGYSN D+R YL ALS LQD YPERLGKL+IVHAPYIFMT 
Sbjct:   143 CARMPRGQEKFVAIGDLQGWGYSNCDIRGYLAALSTLQDCYPERLGKLYIVHAPYIFMTA 202

Query:   191 WKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQLPLVPIQET 243
             WK++YPFID NTKKKIVFV++KKL  TLLE+IDESQ+P+IYGG+LPLVPIQET
Sbjct:   203 WKVIYPFIDANTKKKIVFVENKKLTPTLLEDIDESQLPDIYGGKLPLVPIQET 255
GO:0005215 "transporter activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=ISS
GO:0019344 "cysteine biosynthetic process" evidence=RCA
TAIR|locus:2006732 AT1G14820 "AT1G14820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275959 DDB_G0275959 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2115320 AT4G36640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025202 AT1G75170 "AT1G75170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138606 AT4G08690 "AT4G08690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000001574 YKL091C "Putative homolog of Sec14p" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
TAIR|locus:2015066 AT1G22180 "AT1G22180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269182 rsc5 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2161942 AT5G63060 "AT5G63060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 6e-44
smart00516158 smart00516, SEC14, Domain in homologues of a S 7e-44
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 1e-37
pfam13716149 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain 1e-12
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 9e-09
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 4e-08
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information 
 Score =  145 bits (367), Expect = 6e-44
 Identities = 61/148 (41%), Positives = 84/148 (56%), Gaps = 4/148 (2%)

Query: 89  FMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLK 148
           ++ G DK+GRP+  +       +K    EE  R++VY L+K+        E FVVI DLK
Sbjct: 12  YLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLK 71

Query: 149 GWGYSN--SDLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKI 206
           G   S+   D       L ILQD YPERL  ++I++ P+ F  +WKIV PF+   T+KKI
Sbjct: 72  GLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKI 131

Query: 207 VFVQDKKLKSTLLEEIDESQIPEIYGGQ 234
           VF+     K  LL+ ID+ Q+PE YGG 
Sbjct: 132 VFL--GSDKEELLKYIDKEQLPEEYGGT 157

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 243
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 100.0
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 100.0
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.96
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.76
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 98.95
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 98.9
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 92.78
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 90.51
smart0054643 CUE Domain that may be involved in binding ubiquit 88.62
PF0697260 DUF1296: Protein of unknown function (DUF1296); In 85.38
smart0080463 TAP_C C-terminal domain of vertebrate Tap protein. 80.11
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-46  Score=302.84  Aligned_cols=221  Identities=43%  Similarity=0.697  Sum_probs=199.1

Q ss_pred             HHHHHHHHHHhhhC-CCCCCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhcCCCCCCCCCCchhhhhcCCceeccCC
Q 043459           16 TKIRLMRALVEKQD-PSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPNGSISLSEVPNELSQNKMFMQGFD   94 (243)
Q Consensus        16 ~~l~~lr~~l~~~~-~~~~~~~d~~llrfL~~~~~d~~~a~~~l~~~~~~R~~~~~~~~~~~~~~~~~l~~~~~~~~g~d   94 (243)
                      +.+.++++.+.... ......+|.+++|||||++||+++|.+++.+++.||+.+++...+..+++..++..|.+|+.|+|
T Consensus        27 ~k~~~~~~~~~pl~~~~~~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~yi~G~D  106 (324)
T KOG1470|consen   27 DKINSVKKLLGPLTEKESKWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGKAYILGHD  106 (324)
T ss_pred             HHHHHHHHhhcchhhhhHhcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCcEEEeccc
Confidence            45566665553321 12346799999999999999999999999999999999988765677789999999999999999


Q ss_pred             CCCCcEEEEeCccccccccCCHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCCCccHHHHHHHHHHHhhccccc
Q 043459           95 KKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNSDLRAYLGALSILQDYYPER  174 (243)
Q Consensus        95 ~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~iI~D~~g~~~~~~~~~~~k~~~~~~~~~yP~r  174 (243)
                      ++||||+|++++...++. .+.++..|+++|+||.++..++.+++++++++|++|+|++|+|.+..+.++.++|+|||+|
T Consensus       107 ~~gRPVl~~~~~~~~qn~-~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN~d~~~~k~~~~~lq~hYPEr  185 (324)
T KOG1470|consen  107 KDGRPVLYLRPRPHRQNT-KTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSNPDIKFLKELLHILQDHYPER  185 (324)
T ss_pred             CCCCeEEEEecCCCCCCC-CCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccCCCcHHHHHHHHHHHHhChHH
Confidence            999999999888777777 7899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEeCChHHHHHHHHHcccCChhhhhceEEecCcchHHHHHhcCCCCCCccccCCCCCCccC
Q 043459          175 LGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQLPLVPI  240 (243)
Q Consensus       175 l~~i~ivn~p~~~~~~~~~ik~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~~~~  240 (243)
                      |+..+++|+||+|..+|+++|||++++|++||+|+.+.   ..+.+|||+++||..+||+..+...
T Consensus       186 Lg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~---~~l~~~~d~~~l~s~~GG~~~~~y~  248 (324)
T KOG1470|consen  186 LGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK---DDLSEYFDESQLPSLFGGKLLFEYT  248 (324)
T ss_pred             hhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecCh---hHHHhhCCccccchhhCCCcccccC
Confidence            99999999999999999999999999999999999875   4699999999999999998776543

>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function Back     alignment and domain information
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 3e-22
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 4e-22
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 2e-20
3hy5_A316 Crystal Structure Of Cralbp Length = 316 1e-15
1olm_E 403 Supernatant Protein Factor In Complex With Rrr-Alph 1e-14
1olm_A 403 Supernatant Protein Factor In Complex With Rrr-Alph 1e-14
3hx3_A316 Crystal Structure Of Cralbp Mutant R234w Length = 3 6e-14
4fmm_A360 Dimeric Sec14 Family Homolog 3 From Saccharomyces C 5e-13
1o6u_A 403 The Crystal Structure Of Human Supernatant Protein 2e-12
1oip_A278 The Molecular Basis Of Vitamin E Retention: Structu 9e-08
1r5l_A262 Crystal Structure Of Human Alpha-tocopherol Transfe 3e-07
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure 
Iteration: 1

 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 123/252 (48%), Gaps = 41/252 (16%)
Query: 12  EKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVPN 71
           E+EE  ++    L+EK     + +DD TL RFLRAR  D+  +  MF++  +WR+ +  N
Sbjct: 38  EQEEALLQFRSILLEKN--YKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGAN 95
Query: 72  GSISLSEVPNELSQN------KMFMQGF---DKKGRPIATVLGARHFQNKLGGL------ 116
             I   E   E          KM+ Q +   DK GRP+        +  +LGG+      
Sbjct: 96  TIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPL--------YFEELGGINLKKMY 147
Query: 117 -------------EEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNS-DLRAYLG 162
                        +E++ F  Y +     R     E    + DLKG   SN+  + +Y+ 
Sbjct: 148 KITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIK 207
Query: 163 ALS-ILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEE 221
            ++ I Q+YYPER+GK +I+H+P+ F T++K+V PF+D  T  KI F+     K  LL++
Sbjct: 208 DVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKI-FILGSSYKKELLKQ 266
Query: 222 IDESQIPEIYGG 233
           I    +P  YGG
Sbjct: 267 IPIENLPVKYGG 278
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp Length = 316 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w Length = 316 Back     alignment and structure
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces Cerevisiae Presents Some Novel Features Of Structure That Lead To A Surprising "dimer- Monomer" State Change Induced By Substrate Binding Length = 360 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278 Back     alignment and structure
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query243
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 7e-68
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 1e-67
1olm_A 403 SEC14-like protein 2; lipid-binding protein, chole 2e-58
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 1e-53
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 9e-47
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 2e-08
3peg_A 290 Neurofibromin; SEC14 domain, pleckstrin homology d 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
 Score =  210 bits (536), Expect = 7e-68
 Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 18/244 (7%)

Query: 8   SNIDEKEETKIRLMRALVEKQDPSSKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQT 67
            N+D  +E  +  +R L+E      + +DD TL RFLRAR  DV+ A  MF    KWR+ 
Sbjct: 24  GNLDSAQEKALAELRKLLEDAGFI-ERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKD 82

Query: 68  FVPNGSISLSEVPNELSQNKMFMQ---GFDKKGRPIATVLGARHFQNKLG---GLEEFKR 121
           +  +  +       +    K + Q     DK GRP+          +++      E   +
Sbjct: 83  YGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLK 142

Query: 122 FVVYILDKICSRMPPGQ--------EKFVVIGDLKGWGYSNSD-LRAYLG-ALSILQDYY 171
            +V+  + +     P          E    I DLKG   S++  + +Y+  A  I Q+YY
Sbjct: 143 NLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYY 202

Query: 172 PERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIY 231
           PER+GK +I++AP+ F T +++  PF+D  T  KI  +     +  LL++I    +P  +
Sbjct: 203 PERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSY-QKELLKQIPAENLPVKF 261

Query: 232 GGQL 235
           GG+ 
Sbjct: 262 GGKS 265
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Length = 256 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
1olm_A 403 SEC14-like protein 2; lipid-binding protein, chole 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.58
3peg_A 290 Neurofibromin; SEC14 domain, pleckstrin homology d 99.46
2dam_A67 ETEA protein; KIAA0887, UBA-like domain, structura 92.67
1ufz_A83 Hypothetical protein BAB28515; HBS1-like domain, s 90.72
2dal_A62 Protein KIAA0794; FAS associted factor 1, UBA-like 90.48
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 90.38
2dhy_A67 CUE domain-containing protein 1; structural genomi 87.61
2di0_A71 Activating signal cointegrator 1 complex subunit 2 86.47
1v92_A46 NSFL1 cofactor P47; 3-helix bundle, recombination; 85.03
1otr_A49 Protein CUE2; protein-protein complex, cell cycle; 84.7
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 84.09
3e21_A45 HFAF1, FAS-associated factor 1; UBA, alternative s 82.36
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
Probab=100.00  E-value=9.3e-51  Score=332.38  Aligned_cols=229  Identities=21%  Similarity=0.337  Sum_probs=195.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhhhCC-C-CCCCChHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhcCC-CCCCCCCCchhhh
Q 043459            7 KSNIDEKEETKIRLMRALVEKQDP-S-SKEVDDPTLRRFLRARDLDVEKASGMFLKYLKWRQTFVP-NGSISLSEVPNEL   83 (243)
Q Consensus         7 ~~~l~~~~~~~l~~lr~~l~~~~~-~-~~~~~d~~llrfL~~~~~d~~~a~~~l~~~~~~R~~~~~-~~~~~~~~~~~~l   83 (243)
                      .++||+.++++|++||+++++..+ + +...+|.+|+|||||++||+++|.++++++++||+++.. ..-+.++++...+
T Consensus         1 ~~~ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~   80 (262)
T 1r5l_A            1 GSHMSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLL   80 (262)
T ss_dssp             --------CTTHHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHH
Confidence            368999999999999999998742 3 346899999999999999999999999999999999731 1113445566777


Q ss_pred             hcCCc-eeccCCCCCCcEEEEeCccccccccCCHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCCCc---cHHH
Q 043459           84 SQNKM-FMQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNS---DLRA  159 (243)
Q Consensus        84 ~~~~~-~~~g~d~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~iI~D~~g~~~~~~---~~~~  159 (243)
                      ..|.. +++|+|++||||++++++++++++ .+.+++.++.++.+|.++...+.+..|+++|+|++|++++|+   +++.
T Consensus        81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~-~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~  159 (262)
T 1r5l_A           81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKV-FTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSV  159 (262)
T ss_dssp             HTTCEEECSSCCTTCCEEEEEEGGGCCTTT-SCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHH
T ss_pred             HcCCccCCCCcCCCCCEEEEEeccccCccc-CCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHH
Confidence            78865 678999999999999999999988 789999999999999877655455689999999999999986   5789


Q ss_pred             HHHHHHHHhhcccccccceEEEeCChHHHHHHHHHcccCChhhhhceEEecCcchHHHHHhcCCCCCCccccCCCCCCc
Q 043459          160 YLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQLPLV  238 (243)
Q Consensus       160 ~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~~  238 (243)
                      ++.++.++|++||+|++++||||+|++++++|++++|||+++|++||+++++ ++.++|.++|| ++||++|||+++..
T Consensus       160 ~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~-~~~~~L~~~i~-~~LP~~yGG~~~~~  236 (262)
T 1r5l_A          160 AKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGN-NYKQSLLQHFP-DILPLEYGGEEFSM  236 (262)
T ss_dssp             HHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCS-SCHHHHHHHST-TTSCGGGTCSSCCH
T ss_pred             HHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCC-CcHHHHHHHhh-hhCcHhhCCCCCCH
Confidence            9999999999999999999999999999999999999999999999999975 66789999999 99999999998743
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1 Back     alignment and structure
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Back     alignment and structure
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4 Back     alignment and structure
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 243
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 9e-28
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 2e-27
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 2e-26
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 4e-17
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 5e-15
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 2e-08
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 9e-28
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 14/160 (8%)

Query: 90  MQGFDKKGRPIATVLGARHFQNKL---GGLEEFKRFVVYILDKI-------CSRMPPGQE 139
           M G+D  G P+   +        L      ++  R  +   + +        +++    E
Sbjct: 13  MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVE 72

Query: 140 KFVVIGDLKGWGYSNSD---LRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYP 196
              +I D +G G  +     + AY   L + ++ YPE L +LF+V AP +F   + ++ P
Sbjct: 73  TITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKP 132

Query: 197 FIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQLP 236
           F+  +T+KKI+ +     K  LL+ I   Q+P  YGG + 
Sbjct: 133 FLSEDTRKKIMVL-GANWKEVLLKHISPDQVPVEYGGTMT 171
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query243
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 100.0
d1olma3199 Supernatant protein factor (SPF), middle domain {H 100.0
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 100.0
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.65
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.54
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.42
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 92.86
d1wgla_59 Toll-interacting protein {Human (Homo sapiens) [Ta 91.11
d1mn3a_54 Vacuolar protein sorting-associated protein vps9 { 90.06
d1ufza_83 HBS1-like protein {Mouse (Mus musculus) [TaxId: 10 89.33
d2di0a163 Activating signal cointegrator 1 complex subunit 2 83.7
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 82.71
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-36  Score=231.98  Aligned_cols=157  Identities=18%  Similarity=0.264  Sum_probs=141.6

Q ss_pred             chhhhhcCCce-eccCCCCCCcEEEEeCccccccccCCHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCCCCCCCc--
Q 043459           79 VPNELSQNKMF-MQGFDKKGRPIATVLGARHFQNKLGGLEEFKRFVVYILDKICSRMPPGQEKFVVIGDLKGWGYSNS--  155 (243)
Q Consensus        79 ~~~~l~~~~~~-~~g~d~~Grpv~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~iI~D~~g~~~~~~--  155 (243)
                      +.+.++.|++. ++|+|++||||+++++++++++. .+.+++.+++++.+|.++.....+.+|+++|+|++|++++++  
T Consensus         2 i~~~l~~g~~~~lp~rD~~Gr~v~~~r~~~~d~~~-~~~~~~~r~~~~~~e~~~~~~~~~~~g~~~I~D~~g~s~~~~~~   80 (185)
T d1r5la2           2 IIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKV-FTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQ   80 (185)
T ss_dssp             THHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTT-SCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHH
T ss_pred             hHHHHHcCCceecCCCCcCcCEEEEEEcccCCCCC-CCHHHHHHHHHHHHHHHHhccccCCceEEEEEECCCCCHHHhhh
Confidence            45677888874 78999999999999999999999 899999999999999887765566789999999999999874  


Q ss_pred             -cHHHHHHHHHHHhhcccccccceEEEeCChHHHHHHHHHcccCChhhhhceEEecCcchHHHHHhcCCCCCCccccCCC
Q 043459          156 -DLRAYLGALSILQDYYPERLGKLFIVHAPYIFMTVWKIVYPFIDNNTKKKIVFVQDKKLKSTLLEEIDESQIPEIYGGQ  234 (243)
Q Consensus       156 -~~~~~k~~~~~~~~~yP~rl~~i~ivn~p~~~~~~~~~ik~~l~~~~~~ki~~~~~~~~~~~L~~~i~~~~LP~~~GG~  234 (243)
                       +++.++++++++|++||+|++++||||+|++++++|+++||||++++++||+++++ ++ +++.+++++++||++|||+
T Consensus        81 ~~~~~~~~~~~~~q~~yP~rl~~i~ivn~P~~~~~~~~~vk~fl~~k~~~Ki~~~~~-~~-~~~~~~~~~~~LP~~~GG~  158 (185)
T d1r5la2          81 ITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGN-NY-KQSLLQHFPDILPLEYGGE  158 (185)
T ss_dssp             CCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCS-SC-HHHHHHHSTTTSCGGGTCS
T ss_pred             ccHHHHHHHHHHHHhhCchhhheeEEEcCCHHHHHHHHHHHHhccHHHHhheEEecc-ch-HHHHhhcCHHhCCHhcCCC
Confidence             78999999999999999999999999999999999999999999999999999975 33 5677788899999999999


Q ss_pred             CCCc
Q 043459          235 LPLV  238 (243)
Q Consensus       235 ~~~~  238 (243)
                      ++..
T Consensus       159 ~~~~  162 (185)
T d1r5la2         159 EFSM  162 (185)
T ss_dssp             SCCH
T ss_pred             CCCh
Confidence            8753
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure