Citrus Sinensis ID: 043460

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MEQIYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSIGYISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKMELFSTRSPLHLYRLALLSSCRANIKSYD
Secondary Structure (PSIPRED)
cccccccHHHHHHHHccccHHHHHHHHHHcHHHHHHHHcccccccccccccccEEEEccccccccEEEccccccccccccccccccccccccccccEEEEEEEccEEEEEEcccccEEEEEEccccccEEcccccccccccccEEEEEccccccEEEEEEEEcccccEEEEEEcccccEEEEEEccccccccEEEEccEEEEEccEEEEEEEccEEEEEEccccEEEEEEEccccccccccccEEEEEccEEEEEEccccEEEEEEEEccccccccccccccccccccEEEEEEEEEccccccccccccEEEEEEcccccEEEEEEccEEEEEEcccccEEEEcccccccEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccHHHHHHHHHccccHHHHHHHHHcHHHHHHHcccHHHHHccccccccEEEEcccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEccccccEEEEEccccccEEEcccccccccccEEEEEEcccccccEEEEEEEcccccEEEEEEEcccccEEEEEcccccccccEccccccEEEEEEEEEEEEcccEEEEEEcccccEEEEEEcccccccccccEEEcccccEEEEEEccccEEEEEEEEccccccEEEEEEEEccccccEEEEEEEEcHHccccccccccEEEEEEcccccEEEEEcccEEEEEEccccEEEEEEccccccEEEEEEccccEEEEcccc
Coil and Loop (DISEMBL)
MEQIYLSEDLITEILsrlpvksvVGFKIVSKTWNNLISkvciprilrapsplcgflfpstqdsigyisysdneecgndgeGFAQSLTsllpseslpyaLIDCCNGLILlgsslskhryyvcnpltkqcvaipkaredvlasppalafhpcdssHYKIIRFLRarmdpevdifssenKTWITRkvsvkprrpvsFYVLQSVysrggilynLTYRSTILRYNIealseaeiievpdknnhpcdseviGLCKGALNYASRNQSTLLIWQlddhrhhsnshgsnkaasgARSWILKHSICmdewgnklhvfgltrfynihpnsdiifLGSCDMIYRYHLKtnkmelfstrspLHLYRLALLSSCRANIKSYD
Flexible Loop (DISEMBL)
MEQIYLSEDLITeilsrlpvksVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSIGYISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASppalafhpcdsSHYKIIRFLRARMDPEvdifssenktwitrkvsvkprrpvsFYVLqsvysrggiLYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRhhsnshgsnkaasgARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKMELFSTRSPLHLYRLALLsscraniksyd
Low Complexity Region (SEG)
MEQIYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSIGYISYSDNEECGNDGEGFAQsltsllpseslpYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKMELFSTRSPLHLYRLALLSSCRANIKSYD
Disordered region (IsUnstruct)
***IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSIGYISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLD*****************ARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKMELFSTRSPLHLYRLALLSSCRA******
Disordered Region (DISOPRED)
MEQIYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSIGYISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKMELFSTRSPLHLYRLALLSSCRANIK***
Disordered Region (DISEMBL)
MEQIYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSIGYISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDH****************RSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKMELFSTRSPLHLYRLALLSSCRANIKSYD
Disordered Region (DISPRO)
*EQIYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSIGYISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKMELFSTRSPLHLYRLALLSSCRANIKSYD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQIYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSIGYISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKMELFSTRSPLHLYRLALLSSCRANIKSYD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	368	2.2.26 [Sep-21-2011]
Q9FLS0	420	F-box protein At5g07610 O	yes	no	0.586	0.514	0.306	2e-11
Q1PE57	413	Putative F-box/kelch-repe	no	no	0.817	0.728	0.254	6e-10
Q9LMR4	410	Putative F-box/kelch-repe	no	no	0.472	0.424	0.258	2e-07
Q9SS35	389	Putative F-box protein At	no	no	0.673	0.637	0.250	3e-07
Q84X43	295	F-box only protein 8 OS=A	no	no	0.358	0.447	0.340	5e-07
Q9LU90	414	F-box protein At3g26010 O	no	no	0.619	0.550	0.242	9e-07
Q9FZF8	389	Putative F-box protein At	no	no	0.682	0.645	0.233	7e-06
Q9FGY4	359	F-box protein At5g49610 O	no	no	0.345	0.353	0.295	8e-06
Q9FT50	390	Putative F-box protein At	no	no	0.581	0.548	0.263	2e-05
Q9FVV8	392	Putative F-box protein At	no	no	0.339	0.318	0.246	3e-05

>sp|Q9FLS0|FB253_ARATH F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 119/248 (47%), Gaps = 32/248 (12%)

Query: 8   EDLITEILSRLPVKSVVGFKIVSKTWNNLISK-VCIPRILRA--PSPLCGFLFPSTQDSI 64
           +D++ +ILS LP+K+++ FK VSK W +LI+  V   R++++  P P+ GF   S ++ I
Sbjct: 35  DDVLIQILSFLPIKTLLRFKRVSKRWLSLITNPVFSNRVIKSNHPLPISGFFLHSPRE-I 93

Query: 65  GYISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSL--SKH---RYY 119
            Y   S +++  N  +  + SL            ++   NGL+L   S   S H    YY
Sbjct: 94  KYSFVSLDDDATN--QRISSSLPLWFTDHQTDMIIMQSTNGLLLCKCSCASSNHFNTNYY 151

Query: 120 VCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR--------MDPE--- 168
           V NP TKQ   + +    +  S   LAF P  S HYK+   LR R         D E   
Sbjct: 152 VYNPTTKQYTLLHQIAGHIALS---LAFDPSRSPHYKVF-CLRGRSNNSFSSASDSELYH 207

Query: 169 VDIFSSENKTWITRKVSVKPRRPVSFYVLQ-SVYSRGGI-LYNLTYRSTILRYNIEALSE 226
           ++++SS    W  R+V   P  P +F     SV+  G +  Y  + R   L ++I    E
Sbjct: 208 IEVYSSNEGLW--RRVVPVPTSPSTFIEFSYSVFWNGAVNWYGFSSRDC-LSFDINT-QE 263

Query: 227 AEIIEVPD 234
            +I+ +PD
Sbjct: 264 IKILPLPD 271

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PE57|FBK87_ARATH Putative F-box/kelch-repeat protein At4g22430 OS=Arabidopsis thaliana GN=At4g22430 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 151/377 (40%), Gaps = 76/377 (20%)

Query: 8   EDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSIGYI 67
           E ++TEIL RLP++S+  FK VS+TW + I  V   R+  +       L  +T  S   +
Sbjct: 13  EGIVTEILVRLPLRSISRFKSVSQTWKSAIESVYFRRLFVS-------LHQNTSSSWSLL 65

Query: 68  ----SYSDNEECGNDGEGFAQSLTSLLPSESL----PYALIDCCNGLILLGSSLSKHRYY 119
                + D   CG    G  +SL S +    L     Y      NGLIL+   L   + Y
Sbjct: 66  LRKEEFIDFHGCGT--WGLPKSLGSYIQCMELDGKFEYMWFSGSNGLILMHRKLGTWKNY 123

Query: 120 VCNPLTKQCVAIPKAREDVLASPPALAFHPCDSS----------HYKIIR----FL-RAR 164
           V NP+ +Q V IP       A P +  F  C              +K+++    FL +  
Sbjct: 124 VGNPVLQQWVEIP-------ACPGSYTFF-CGVVTGVDEVGVVLSFKVVKSGNMFLNKGE 175

Query: 165 MDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSV-----YSRGGILYNLTYRSTILRY 219
           M   + ++SSE   WI ++V V P R  +FY   S+     +S+ G  YN      +L +
Sbjct: 176 MYMPLYVYSSETGFWIHKEV-VCPVRLPNFYDPISLNGTLYFSQRGDSYNRRPGLMVLDF 234

Query: 220 NIEALSEAEIIEVPD---KNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNS 276
             +   +   I +PD     N  C +   G        A    + L +W+L D       
Sbjct: 235 YGKP-KDCHFIPLPDHALNRNKTCLATSSGFVMYIKTLAQPGGNLLKVWRLIDD------ 287

Query: 277 HGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHP-NSDIIFLGSCDMIY--RY 333
                      +W L        W   +   G     ++HP + +I++L S D  Y   +
Sbjct: 288 ----------SAWQLM-------WEVSIPFIGCYAPMSMHPFDRNIVYLWSHDNCYLMSF 330

Query: 334 HLKTNKMELFSTRSPLH 350
           +L+T   ++F   S  H
Sbjct: 331 NLQTQNYKIFGDESKHH 347

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMR4|FBK4_ARATH Putative F-box/kelch-repeat protein At1g15680 OS=Arabidopsis thaliana GN=At1g15680 PE=4 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 27/201 (13%)

Query: 3   QIYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRIL--------RAPSPLCG 54
           +I L E+L+ EI++RLP  S+  FK V K W +LI       +          + S +CG
Sbjct: 16  RIELPEELLAEIVARLPFISITRFKSVCKGWRSLIESTYFRHLFVFAHRNSSSSWSLVCG 75

Query: 55  FLFPSTQDSIGYISYSDNEECGNDGEGFAQSLTSLLPSESL--PYALIDCCNGLILLGSS 112
               S ++  G+         G    G  + L S +P   L   + ++ C +GL+LL + 
Sbjct: 76  TFGWSVEEMAGFY--------GCKRYGLPRRLGSYIPPHGLVDKHKIVACTDGLVLLQTV 127

Query: 113 LSKHRYYVCNPLTKQCVAIP-----KAREDVLASPPALAFHPCDSSHYKIIRF-LRARMD 166
             +  + V +P+ +Q V +P          VLA              YK++   +  R +
Sbjct: 128 TKRETFSVGSPVLRQWVQLPPHPWKGISSSVLAIGLVTRVEDGVVMEYKVVCMDIDYRWE 187

Query: 167 PE---VDIFSSENKTWITRKV 184
            E   ++I+SS   TW  +KV
Sbjct: 188 VESLILEIYSSLTGTWTRKKV 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS35|FB137_ARATH Putative F-box protein At3g10240 OS=Arabidopsis thaliana GN=At3g10240 PE=4 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 114/279 (40%), Gaps = 31/279 (11%)

Query: 9   DLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSI--GY 66
           DL++EIL RLP KSV  F+ VSK W+++ ++     +L   SP     F + +       
Sbjct: 30  DLVSEILLRLPEKSVARFRCVSKPWSSITTEPYFINLLTTRSPRLLLCFKANEKFFVSSI 89

Query: 67  ISYSDNEECGNDGEGFAQSLTS--LLPSESLPY-ALIDCCNGLILLGSSLSKHRYYVCNP 123
             +    E  N    ++Q +    +  SE + Y    +  NGLI    S    R  V NP
Sbjct: 90  PQHRQTFETWNKSHSYSQLIDRYHMEFSEEMNYFPPTESVNGLICFQESA---RLIVWNP 146

Query: 124 LTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDP-EVDIFSSENKTWITR 182
            T+Q + +PK   +       L + P +  H  +     A  D   V    S  K W T 
Sbjct: 147 STRQLLILPKPNGNSNDLTIFLGYDPVEGKHKVMCMEFSATYDTCRVLTLGSAQKLWRTV 206

Query: 183 KVSVKPRRPVSFYVLQSVYSRG----GILYNLTYRSTILRY---NIEALSEA-EIIEVPD 234
           K   K R           Y  G    G++Y++ Y   +  +   + +  SE  ++IE+P 
Sbjct: 207 KTHNKHR--------SDYYDSGRCINGVVYHIAYVKDMCVWVLMSFDVRSEIFDMIELPS 258

Query: 235 KNNHPCDSEVIGLCKGALNYASR---NQSTLLIWQLDDH 270
            + H    +V+    G L    R    ++ + +W L+ H
Sbjct: 259 SDVH---KDVLIDYNGRLACVGREIIEKNGIRLWILEKH 294

Arabidopsis thaliana (taxid: 3702)

>sp|Q84X43|FBX8_ARATH F-box only protein 8 OS=Arabidopsis thaliana GN=FBX8 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 68/144 (47%), Gaps = 12/144 (8%)

Query: 5   YLSEDLITEILSRLPVKSVVGFKIVSKTWNNLI-SKVCIPRILRAPSPLCGFLFPSTQDS 63
           Y+ +DL+ EIL+RLP KSV+ FK VSK W++L+ S+    R L  PS     L+    D 
Sbjct: 40  YIPQDLLIEILTRLPPKSVMRFKCVSKFWSSLLSSRYFCNRFLIVPSQPQPSLYMCLLDR 99

Query: 64  IGY---ISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYV 120
             Y   +  S           F Q LT       +    +    G I    +L K R Y 
Sbjct: 100 YNYSKSLILSSAPSTSPYSFVFDQDLT----IRKMGGFFLRILRGFIFFTRNL-KARIY- 153

Query: 121 CNPLTKQCVAIPKARE-DVLASPP 143
            NP T+Q V +P  +E D++A PP
Sbjct: 154 -NPTTRQLVILPTIKESDIIAGPP 176

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU90|FB188_ARATH F-box protein At3g26010 OS=Arabidopsis thaliana GN=At3g26010 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 40/268 (14%)

Query: 4   IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRIL----RAPSPLCGFLFPS 59
           I+L++ + TEIL+RLP++ +  FK VSKTW + I  V   R+     R  S     ++  
Sbjct: 8   IHLTDAIWTEILARLPLRIIARFKSVSKTWKSTIESVYFRRLFVSVHRKSSTSWSLMWYG 67

Query: 60  TQDSIGYISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYY 119
            +D +G+         G +  G  +SL+  +PS      +I+  +  ++L S       +
Sbjct: 68  QKDLVGF--------HGCETWGLPKSLSFYIPSS---LCIIEGSSHGLVLISENDDDCCF 116

Query: 120 VCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSH---YKIIRFLRARMDPE-------V 169
           V NP+ +Q + IP     V +S   L     D      +K+++     +          V
Sbjct: 117 VGNPVLQQWIKIPPP--PVHSSVFGLVSRVDDDGFVLGFKVVKLAEVIVTNNYVSCSLSV 174

Query: 170 DIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILY--NLTYRSTILRYNI--EALS 225
            ++SSE   W  + +   P +  +F      ++  G +Y  +L+    ++ Y+   E   
Sbjct: 175 FVYSSETGIWTCKTIHC-PYQITNF----GSFTLDGTIYFDHLSEPGVLVAYDFYSEISD 229

Query: 226 EAEIIEVPDKNNHPCDSEVIGLCKGALN 253
           +  +I +PD  NH  +S+     KGAL 
Sbjct: 230 QFWVIPLPDHPNHGFNSDF----KGALT 253

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZF8|FB44_ARATH Putative F-box protein At1g47790 OS=Arabidopsis thaliana GN=At1g47790 PE=4 SV=1

 Score = 52.0 bits (123), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 36/287 (12%)

Query: 9   DLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCG---FLFPSTQDSIG 65
           DL +EIL RLPVKSVV F+ VSK W+++I+     +     S       F F  +     
Sbjct: 28  DLASEILLRLPVKSVVRFRCVSKLWSSIITDPYFIKTYETQSSTRQSLLFCFKQSDKLFV 87

Query: 66  YISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLI---LLGSSLSKHRYYVCN 122
           +     + +  +  +         LP E    +  +  +GLI   +L + +      V N
Sbjct: 88  FSIPKHHYDSNSSSQAAIDRFQVKLPQEFSYPSPTESVHGLICFHVLATVI------VWN 141

Query: 123 PLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFS--SENKTWI 180
           P  +Q + +PK R+        L + P +  H K++   R R   E  + +  S  K+W 
Sbjct: 142 PSMRQFLTLPKPRKSWKELTVFLGYDPIEGKH-KVVCLPRNRTCDECQVLTLGSAQKSWR 200

Query: 181 TRKVSVKPRRPVSFYVLQSVYSR--GGILYNLTYRS-----TILRYNIEALSEAEIIEVP 233
           T K   K R           + R   G++Y + Y        I+ +++++  + ++I++P
Sbjct: 201 TVKTKHKHRST------NDTWGRCIKGVVYYIAYVYHTRVWCIMSFHVKS-EKFDMIKLP 253

Query: 234 DKNNHPCDSEVIGLCKGALNYASR----NQSTLLIWQLDDHRHHSNS 276
            +N +    +V+   +G L    +    N   + +W L+D   H  S
Sbjct: 254 LENIY---RDVMINYEGRLACVDKLYTLNNDGIRLWILEDAEKHKWS 297

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 15/142 (10%)

Query: 8   EDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSIGYI 67
           +++I +IL+RLPVKS+  FK V K+W  L S      +    S     L     DS   I
Sbjct: 11  DEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQLSVKEQLLVAEVSDSSSLI 70

Query: 68  SYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQ 127
              +          F +    +  S           NGL+   S   K  YYVCNP T++
Sbjct: 71  CVDNLRGVSELSLDFVRDRVRIRVSS----------NGLLCCSSIPEKGVYYVCNPSTRE 120

Query: 128 CVAIPKAREDVLASPPALAFHP 149
              +PK+RE      P   F+P
Sbjct: 121 YRKLPKSRER-----PVTRFYP 137

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FT50|FB202_ARATH Putative F-box protein At3g52320 OS=Arabidopsis thaliana GN=At3g52320 PE=4 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 111/254 (43%), Gaps = 40/254 (15%)

Query: 6   LSEDLITEILSRLPVKSVVGFKIVSKTWNNLI-SKVCIPRILRAPSPLCGFLFPSTQDSI 64
           + E+++ +IL RLP KS++ FK VSK W +LI S+    R  +  SP C  LF    D  
Sbjct: 27  IPEEMLIDILIRLPAKSLMRFKCVSKLWLSLITSRYFTNRFFKPSSPSC--LFAYLVDRE 84

Query: 65  GYISYSDNEECGNDGEGFAQSLTSLLPSES-LPYA---LIDCCNGLILLGSSLSKHRYYV 120
               Y   +   +     + +  S++   S +P     L++   GL+   +     R  V
Sbjct: 85  NQSKYLLLQSSSSSRHDHSDTSVSVIDQHSTIPIMGGYLVNAARGLLCYRTG---RRVKV 141

Query: 121 CNPLTKQCVAIP--KAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK- 177
           CNP T+Q V +P  +++ +V        FH      YK++  L   +  E  +  SE++ 
Sbjct: 142 CNPSTRQIVELPIMRSKTNVWNWFGHDPFH----DEYKVLS-LFWEVTKEQTVVRSEHQV 196

Query: 178 -------TWITRKVSVKPRRPVSFYVLQSVYSRG----GILY----NLTYRSTILRYNIE 222
                  +W   K    P RP         YSRG    G+LY        R  ++ +++ 
Sbjct: 197 LVLGVGASWRNTKSHHTPHRPF------HPYSRGMTIDGVLYYSARTDANRCVLMSFDLS 250

Query: 223 ALSEAEIIEVPDKN 236
           +  E  +IE+P +N
Sbjct: 251 S-EEFNLIELPFEN 263

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVV8|FB87_ARATH Putative F-box protein At1g71320 OS=Arabidopsis thaliana GN=At1g71320 PE=4 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 13/138 (9%)

Query: 4   IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI--PRILRA--PSPLCGFLFPS 59
           I++ +D+   I   LP+KS+  FK++SK W ++I        R++R   P+P   FL  S
Sbjct: 12  IFIPDDIAEGIFHHLPIKSLARFKVLSKKWTSMIESTYFSHKRLIRTGLPTPNMKFLHIS 71

Query: 60  TQDSIGYISYSDN------EECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSL 113
              +  ++    N      E    D +   ++      S++    ++  C+GL+LL    
Sbjct: 72  QHFTANFVEEYSNSITFLLETFSRDDQNNRKTFDE---SQNKTIQVLGSCDGLVLLRIHD 128

Query: 114 SKHRYYVCNPLTKQCVAI 131
                Y+ NP TK+ + +
Sbjct: 129 DFRSIYLINPTTKEHMKL 146

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
224135955	391	predicted protein [Populus trichocarpa]	0.942	0.887	0.339	3e-44
224104663	391	predicted protein [Populus trichocarpa]	0.942	0.887	0.332	1e-41
224135959	334	predicted protein [Populus trichocarpa]	0.842	0.928	0.329	7e-36
224097562	396	predicted protein [Populus trichocarpa]	0.926	0.861	0.295	7e-33
224097558	531	predicted protein [Populus trichocarpa]	0.864	0.598	0.309	3e-31
255539837	323	conserved hypothetical protein [Ricinus	0.809	0.922	0.293	1e-25
224105803	280	predicted protein [Populus trichocarpa]	0.578	0.760	0.346	5e-23
125562300	360	hypothetical protein OsI_30003 [Oryza sa	0.842	0.861	0.282	5e-23
297726601	369	Os08g0529400 [Oryza sativa Japonica Grou	0.842	0.840	0.282	8e-23
357126153	363	PREDICTED: F-box protein At2g40910-like	0.820	0.831	0.280	1e-22

>gi|224135955|ref|XP_002327345.1| predicted protein [Populus trichocarpa] gi|222835715|gb|EEE74150.1| predicted protein [Populus trichocarpa]

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 137/403 (33%), Positives = 202/403 (50%), Gaps = 56/403 (13%)

Query: 4   IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRI----LRAPSPLCGFLFPS 59
           + L +D+I EIL RLPVK V+  K+VSK W+ LIS VC P         PS   GFLF  
Sbjct: 3   VQLPDDMIVEILCRLPVKVVMRLKVVSKAWHRLISNVCAPLFSAAAAAHPS---GFLFLC 59

Query: 60  TQDSIG-------YISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSS 112
           +   IG       Y SY D  +C    +GF  S   +LP         DCCNGL+L    
Sbjct: 60  SFQIIGGLGYFAAYASYPDVRDCVGQTDGFVDSYACMLPFMLSSDHYFDCCNGLLLFVRR 119

Query: 113 LSK----HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFL----RAR 164
             +    H Y+VCN  T+QCVAIP  R        A+A+ P  S HYK++RF+    +  
Sbjct: 120 EQREALPHYYFVCNTTTRQCVAIPNPRPRTAPFAAAIAYDPAKSPHYKVVRFIYLEEKTS 179

Query: 165 MDPEVDIFSSENKTWITRKVSVKPRRPVSFY-------VLQSVYSRGGILYNLTY-RSTI 216
              ++DIFSS+   W+ R V +    P++         + +S+Y   G++Y L++  + +
Sbjct: 180 CPVKLDIFSSDTGKWVRRGVMLSTELPLAAADADKYGCIRRSIY-LDGMIYKLSFVVNYL 238

Query: 217 LRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLL--IWQLDDHRHHS 274
           +R+++ A S+   IE+P KN   C    IG+ +G+L Y++ ++S L+  IW L+D     
Sbjct: 239 IRFDLNAPSDVA-IELPHKNAAACHG-FIGMSRGSLYYSNHDESGLMISIWLLEDR---- 292

Query: 275 NSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRF----YNIHPNSDIIFLGSCDMI 330
                         W L H I +D   +K      + F    Y IHP SDIIFLG  +M+
Sbjct: 293 --------CKRDPFWKLTHRISVDSLTSKYPDGRNSGFHFHTYAIHPASDIIFLGKPNMV 344

Query: 331 YRYHLKTNKM-ELFSTRSPLHL----YRLALLSSCRANIKSYD 368
             Y LK+NK  E+F+  S L +    + + L S C A + ++D
Sbjct: 345 LSYDLKSNKSEEVFTLSSGLEISSGQHFVHLYSPCYAVLSNFD 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104663|ref|XP_002333910.1| predicted protein [Populus trichocarpa] gi|222838910|gb|EEE77261.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 202/403 (50%), Gaps = 56/403 (13%)

Query: 4   IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRI----LRAPSPLCGFLFPS 59
           + L +++I EIL +LPVK V+  K+VSKTW+ LIS VC P         PS   GFLF  
Sbjct: 3   VQLPDNIIVEILYQLPVKVVMRLKVVSKTWHRLISNVCAPLFSAAAAAHPS---GFLFLC 59

Query: 60  TQDSIG-------YISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSS 112
           +   IG       Y SY D  +C    +GF  S   +LP         DCCNGL+L    
Sbjct: 60  SFQIIGGLGYFAAYASYPDVHDCVGQTDGFVDSYACMLPFMLSSDHYFDCCNGLLLFVRR 119

Query: 113 LSK----HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFL----RAR 164
             +    H Y+VCN  T+QCVAIP  R        A+A+ P  S HYK++RF+    +  
Sbjct: 120 EQREDLPHYYFVCNTTTRQCVAIPNPRPRTAPFAAAIAYDPAKSPHYKVVRFIYLEEKTS 179

Query: 165 MDPEVDIFSSENKTWITRKVSVKPRRPVSFY-------VLQSVYSRGGILYNLTY-RSTI 216
              ++DIFSS+   W+ R V +    P++         + +S+Y   G++Y L++  + +
Sbjct: 180 CPVKLDIFSSDTGKWVRRGVMLSTELPLAAADADKYGCIRRSIY-LDGMIYKLSFVVNYL 238

Query: 217 LRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLL--IWQLDDHRHHS 274
           +R+++ A S+   IE+P KN        IG+ +G+L Y+++++S L+  IW L+D     
Sbjct: 239 IRFDLNAPSDVA-IELPHKNAAD-RHGFIGMSRGSLYYSNQDESGLMISIWLLEDR---- 292

Query: 275 NSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRF----YNIHPNSDIIFLGSCDMI 330
                         W L H I +D   +K      + F    Y IHP SDIIFLG  +M+
Sbjct: 293 --------CKRDPFWKLTHRISVDSLTSKYPDVRNSGFHFHTYAIHPASDIIFLGKPNMV 344

Query: 331 YRYHLKTNKM-ELFSTRSPLHL----YRLALLSSCRANIKSYD 368
             Y  K+NK  E+F+  S L +    + + L S C A + ++D
Sbjct: 345 LSYDHKSNKSEEVFTLSSGLEISSGQHFVHLYSPCYAVLSNFD 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135959|ref|XP_002327346.1| predicted protein [Populus trichocarpa] gi|222835716|gb|EEE74151.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 175/370 (47%), Gaps = 60/370 (16%)

Query: 4   IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRI----LRAPSPLCGFLFPS 59
           + LS+D+I EIL RLPVK V+    VSK W+ LIS VC P         PS   GFLF  
Sbjct: 3   VQLSDDMIIEILCRLPVKMVMRLNAVSKAWHRLISNVCAPLFSAAAAAHPS---GFLFLC 59

Query: 60  TQDSIG-------YISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSS 112
           +   IG       Y SY D  +C    +GF  S   +LP         DCCNGL+L    
Sbjct: 60  SFQIIGGLGYFAAYASYPDVRDCVGQTDGFVDSYACMLPFMLSSDHYFDCCNGLLLFVRR 119

Query: 113 LSK----HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPE 168
             +    H Y+VCN  T+QCVAIP  R        A+A+ P  S HYK++RF+       
Sbjct: 120 EQREALPHYYFVCNTTTRQCVAIPNPRPRTAPFAAAIAYDPAKSPHYKVVRFIYF----- 174

Query: 169 VDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEA 227
                 E K ++  +            + +S+Y   G++Y L++  + ++R+++ A S+ 
Sbjct: 175 ------EEKNFLPDEYGC---------IRRSIY-LDGMIYKLSFVVNYLIRFDLNAPSDV 218

Query: 228 EIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLL--IWQLDDHRHHSNSHGSNKAASG 285
             IE+P KN        IG+ +G+L Y+  ++S L+  IW L+D                
Sbjct: 219 A-IELPHKNAAD-RHGFIGMSRGSLYYSYHDESGLMISIWLLEDR------------CKR 264

Query: 286 ARSWILKHSICMDEWGNKLHVFGLTRF----YNIHPNSDIIFLGSCDMIYRYHLKTNKME 341
              W L H+I +D   +K      + F    Y IHP SDIIFLG+  M+  Y LK+NK E
Sbjct: 265 DPFWKLTHNISVDSLTSKYPDVRNSGFHFHTYAIHPASDIIFLGNPTMVISYDLKSNKSE 324

Query: 342 LFSTRSPLHL 351
             +    + L
Sbjct: 325 EIANEKDMGL 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097562|ref|XP_002310987.1| predicted protein [Populus trichocarpa] gi|222850807|gb|EEE88354.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (371), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 183/392 (46%), Gaps = 51/392 (13%)

Query: 6   LSEDLITEILSRLP-VKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSI 64
           L +D++ EIL R+   K ++  K V K+WNNLI+  C+P+I  A SPL GF++ + +   
Sbjct: 25  LPDDVLVEILCRVTDRKHLIRLKSVCKSWNNLITDACVPKI-SASSPLHGFIYLAKKIGF 83

Query: 65  G-----YISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILL--GSSLSKHR 117
           G     YI  +       +   F +S +SLLP E      +DCCNGL+L   G +L   +
Sbjct: 84  GKPYIDYIPCAITPAVAPEPHEFVKSYSSLLPFEPARGDFLDCCNGLLLFVEGCTL---Q 140

Query: 118 YYVCNPLTKQCVAIPK--AREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEV--DIFS 173
           YYVCNP TK CVAIP+    E+++ +  ALAF P  S HY+++ F  +   P V   +FS
Sbjct: 141 YYVCNPATKHCVAIPRDFMLENIIFA--ALAFDPSTSPHYRVVCFDYSESRPPVRLQVFS 198

Query: 174 SENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVP 233
           SE   W   +            V   +Y  G  LY ++    I+ +++     +  IE+P
Sbjct: 199 SETGNWTGNETPFGYSNKKCKVVKHCIYLDGA-LYCISTSKHIICFDLNR-GNSRAIELP 256

Query: 234 DKNN-HPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILK 292
           +K    P  S  +G  +G L Y     +    W L+D   +               W L 
Sbjct: 257 EKERLDPNGSGCVGQWRGHLCYTDLVGTAFYFWLLEDRCKNDR-------------WTLV 303

Query: 293 HSICMDE----WGNKLHVFGLTRF--------YNIHPNSDIIFLGSCDMIYRYHLKTNKM 340
           H+I +D     W  +  +  + RF        + +HP SD+IF G+  ++  YHL+  ++
Sbjct: 304 HNINVDYLGKLWLQRDSMITIGRFGKISSFRPFALHPTSDVIFFGTPGVMLSYHLEDKRL 363

Query: 341 ELFSTRSPLHLYRLALL-----SSCRANIKSY 367
           +L        L  +  L     + C  N+K +
Sbjct: 364 KLIYRTKKDRLILMGQLMVFPYTPCLVNLKDF 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097558|ref|XP_002310986.1| predicted protein [Populus trichocarpa] gi|222850806|gb|EEE88353.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 176/372 (47%), Gaps = 54/372 (14%)

Query: 6   LSEDLITEILSRLP-VKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLF-----PS 59
           L +D++ EIL R+   K ++  K V K WNNLI K+         SPL GF++      S
Sbjct: 25  LPDDVLVEILCRVTDRKHLIRLKSVCKCWNNLIPKI------SDSSPLRGFIYHALRVSS 78

Query: 60  TQDSIGYISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYY 119
            +  I YI Y+       +   F +S +SLLP +      +DCCNGL+L        RYY
Sbjct: 79  RETYIDYIPYALTPTVAPEPHEFIKSYSSLLPFDLARGDFLDCCNGLLLFVEG-PIPRYY 137

Query: 120 VCNPLTKQCVAIPK--AREDVLASPPALAFHPCDSSHYKIIRFLRARMDP--EVDIFSSE 175
           VCNP+TKQCVAIP+    E++  +  +LAF P  S HY+++ F  +++ P  ++ +FSSE
Sbjct: 138 VCNPVTKQCVAIPRDFTLENICTA--SLAFDPFKSPHYRVVCFDYSKLKPPQKLRVFSSE 195

Query: 176 NKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEA---------LSE 226
             +W  ++ +       S      +Y   G+LY  T    I    I++            
Sbjct: 196 TGSWTIQETAFGYGSKKSRLAKHCIY-LDGVLYRQTASKQIDSKQIDSKRLLCFDLNRGN 254

Query: 227 AEIIEVPDKNN-HPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASG 285
           +  IE+P+K    P D   IGL +  L Y+    + L  W L+D           +  +G
Sbjct: 255 SRAIELPEKERLAPNDYGCIGLSRRHLCYSDLVGTALHFWLLED-----------RCKNG 303

Query: 286 ARSWILKHSICMDEWGNKLHVFG---LTRF--------YNIHPNSDIIFLGSCDMIYRYH 334
              W L H+I +D  G  +H      + RF        + +HP S++IFLG+   +  YH
Sbjct: 304 --RWTLIHNIKVDFLGKHVHRLDRITIARFGKISALRPFALHPTSEVIFLGTRGAMLSYH 361

Query: 335 LKTNKMELFSTR 346
            K  ++EL   R
Sbjct: 362 PKDKRVELIYRR 373

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539837|ref|XP_002510983.1| conserved hypothetical protein [Ricinus communis] gi|223550098|gb|EEF51585.1| conserved hypothetical protein [Ricinus communis]

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 168/351 (47%), Gaps = 53/351 (15%)

Query: 7   SEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSIG- 65
           ++DL+ EI+ +LP++S+  FK VSKTW++ I   CIP++L++              SIG 
Sbjct: 9   TDDLMLEIVLKLPMRSLARFKCVSKTWHSRIQDFCIPKLLQS--------LQLQVSSIGR 60

Query: 66  --YISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNP 123
             ++ Y DN            S +  LP   L   L+DCCNGL+LL   +    Y VCNP
Sbjct: 61  EHHVHYIDNTR-------VLYSCSLFLPRPILACHLLDCCNGLLLLW--VCDKEYVVCNP 111

Query: 124 LTKQCVA----IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW 179
           +TKQ V+    +P+ +   L    ALAF P  S HYK++ F     +  + +FSS++ +W
Sbjct: 112 VTKQYVSLKLLVPRNQVTGLLINAALAFDPSISPHYKVVLF--DSRNNRLLVFSSKSWSW 169

Query: 180 ITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIE----ALSEAEIIEVPDK 235
              K  ++    +  +  +S+Y  G I Y L+    +++++I+    A      I++P  
Sbjct: 170 NPLKYELQDVLSILRWDKESIYFCGAI-YKLSKSGHVVKFSIDEEKVASDRVRAIKLP-- 226

Query: 236 NNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSI 295
             +  +    G+  G+L+YA+ +   L IW L            N +      W+LK+++
Sbjct: 227 -KYAPEMRCYGVSNGSLHYANVDDGNLQIWVL------------NGSIGDECEWVLKYTV 273

Query: 296 CMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDM-----IYRYHLKTNKME 341
                G    ++ +     IHP SDIIFLG CD      +Y Y      +E
Sbjct: 274 SCQTIGKDRGIYSVHPC-AIHPFSDIIFLG-CDGGKYPNVYYYDFSNQTLE 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105803|ref|XP_002333768.1| predicted protein [Populus trichocarpa] gi|222838455|gb|EEE76820.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 15/228 (6%)

Query: 6   LSEDLITEILSRLP-VKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLF-----PS 59
           L +D++ EIL R+   K ++  K V K WNNLI+  C+P+I  A SPL GF++      S
Sbjct: 25  LPDDVLVEILCRVTDGKHLIRLKSVCKCWNNLITDACVPKI-SASSPLHGFIYHALRVSS 83

Query: 60  TQDSIGYISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYY 119
            +  I YI  +       +   F +S +SLLP +      +DCCNGL+L        RYY
Sbjct: 84  RKTYIDYIPCAMTPAVAPEPHEFVKSYSSLLPFDLARGDFLDCCNGLLLFVEG-PIPRYY 142

Query: 120 VCNPLTKQCVAIPK--AREDVLASPPALAFHPCDSSHYKIIRFLRARMDP--EVDIFSSE 175
           VCNP+TKQCVAIP+    E++  +  +LAF P  S HY+++ F  +++ P  ++ +FSSE
Sbjct: 143 VCNPVTKQCVAIPRDFTLENICTA--SLAFDPFKSPHYRVVCFDYSKLKPPQKLRVFSSE 200

Query: 176 NKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEA 223
             +W  ++ +       S      +Y   G+LY  T    I    I++
Sbjct: 201 TGSWTIQETAFGYGSKKSRLAKHCIY-LDGVLYRQTASKQIDSKQIDS 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125562300|gb|EAZ07748.1| hypothetical protein OsI_30003 [Oryza sativa Indica Group]

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 155/354 (43%), Gaps = 44/354 (12%)

Query: 8   EDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCG-FLFPSTQDSIGY 66
           +DL+ EILSRLP KS+  FK VS++W  LIS   + R  R P    G F+         Y
Sbjct: 5   DDLLVEILSRLPFKSLARFKCVSRSWRALISGGDLRR--RLPLLAAGLFVGDGGGGEPRY 62

Query: 67  ISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTK 126
            +      C  DG  F     S  P       ++D C GL+L  S  +    YV  P T+
Sbjct: 63  AT-----ACSGDGVEFCD--MSFFPLAETAARVVDACEGLLLYRSLAAASAMYVACPATR 115

Query: 127 QCVAIPKAREDVLASPPALAFHPCD----SSHYKIIRFLR-ARMDPEVDIFSSENKTWIT 181
           +  A+P  R +  A  P LAF P D    S  Y ++ F+        VD+FSSE   W  
Sbjct: 116 RWAALPVPRRE--AQLPLLAFDPADGGGGSPRYHVVCFVAWQERGATVDVFSSETGAWAE 173

Query: 182 RKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDK--NNHP 239
           R  +       S     + + RGG+L+ L Y   ++  ++ A +       P +     P
Sbjct: 174 RDAAFGGVEASSLS--PTTHYRGGVLHVLAYPDRVVLMDLAATTTTTTSVAPGRLAPRLP 231

Query: 240 CDSEV---IGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC 296
            D +    +G  +G L+YA  +   L +W LD           + A+ G+  WIL +++C
Sbjct: 232 DDVDAGARLGHSRGRLHYAKCDGERLRVWALD----------VDAASPGSCQWILTNTVC 281

Query: 297 MDEW--GNKLHVFGLTRFYNIHPN-SDIIFL-------GSCDMIYRYHLKTNKM 340
           ++E      L      +F   HP+ +D+++L        SCDM  +  + + K+
Sbjct: 282 VNEMTINGGLWAASEVKFLAFHPDMADVVYLSSPEGKVASCDMRRKEMVSSWKL 335

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297726601|ref|NP_001175664.1| Os08g0529400 [Oryza sativa Japonica Group] gi|42407972|dbj|BAD09110.1| hypothetical protein [Oryza sativa Japonica Group] gi|255678596|dbj|BAH94392.1| Os08g0529400 [Oryza sativa Japonica Group]

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 155/354 (43%), Gaps = 44/354 (12%)

Query: 8   EDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCG-FLFPSTQDSIGY 66
           +DL+ EILSRLP KS+  FK VS++W  LIS   + R  R P    G F+         Y
Sbjct: 5   DDLLVEILSRLPFKSLARFKCVSRSWRALISGGDLRR--RLPLLAAGLFVGDGGGGEPRY 62

Query: 67  ISYSDNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTK 126
            +      C  DG  F     S  P       ++D C GL+L  S  +    YV  P T+
Sbjct: 63  AT-----ACSGDGVEFCD--MSFFPLAETAARVVDACEGLLLYRSLAAASAMYVACPATR 115

Query: 127 QCVAIPKAREDVLASPPALAFHPCD----SSHYKIIRFLR-ARMDPEVDIFSSENKTWIT 181
           +  A+P  R +  A  P LAF P D    S  Y ++ F+        VD+FSSE   W  
Sbjct: 116 RWAALPVPRRE--AQLPLLAFDPADGGGGSPRYHVVCFVAWQERGATVDVFSSETGAWAE 173

Query: 182 RKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDK--NNHP 239
           R  +       S     + + RGG+L+ L Y   ++  ++ A +       P +     P
Sbjct: 174 RDAAFGGVEASSLS--PTTHYRGGVLHVLAYPDRVVLMDLAATTTTTTSVAPGRLAPRLP 231

Query: 240 CDSEV---IGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC 296
            D +    +G  +G L+YA  +   L +W LD           + A+ G+  WIL +++C
Sbjct: 232 DDVDAGARLGHSRGRLHYAKCDGERLRVWALD----------VDAASPGSCQWILTNTVC 281

Query: 297 MDEW--GNKLHVFGLTRFYNIHPN-SDIIFL-------GSCDMIYRYHLKTNKM 340
           ++E      L      +F   HP+ +D+++L        SCDM  +  + + K+
Sbjct: 282 VNEMTINGGLWAASEVKFLAFHPDMADVVYLSSPEGKVASCDMRRKEMVSSWKL 335

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126153|ref|XP_003564753.1| PREDICTED: F-box protein At2g40910-like [Brachypodium distachyon]

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 166/360 (46%), Gaps = 58/360 (16%)

Query: 6   LSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSIG 65
           L EDL+TE+L RLP KS+  F+ VS TW  LIS   + R  R P    G LF       G
Sbjct: 5   LGEDLLTEVLVRLPHKSLARFQCVSTTWRALISGDYLRR--RLPLITSGVLFHDGPPRPG 62

Query: 66  YISY-------SDNEECG---NDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSK 115
             +Y       S + + G     G G  ++     P  +   ++ID CNGL+L  +  ++
Sbjct: 63  KQAYTYACASPSSSAQDGVEDRGGSGVEEADMGFFPCHATS-SIIDGCNGLLLYYA--AR 119

Query: 116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPE---VDIF 172
             ++V NP T++  A+P  R+  L S   LAF PC S HYK++ F  AR  P    V++F
Sbjct: 120 AAFHVVNPTTRRWAALPAPRQRTLLS--VLAFDPCASPHYKVVCF--ARWLPRGACVEVF 175

Query: 173 SSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEA-EIIE 231
            SE+  W  R++           +  +++  G  ++ L Y   ++R ++     A  +  
Sbjct: 176 DSESGAWRERELDFGIDTDA---MSATMHCSGAAIHVLAYSGHVVRIDLAGTGMACAVTA 232

Query: 232 VPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARS-WI 290
           +P   ++   +   G C+G L YAS + + L +W+L D             A G++S W 
Sbjct: 233 LPAPVSYRARA---GHCRGRLRYASSDGARLSLWELRD-------------AEGSQSQWA 276

Query: 291 LKHSICM------DEWG----NKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKTNKM 340
           LKH + +      D  G    NK  +     F   HP  ++++L +   +  + L+  ++
Sbjct: 277 LKHELGVRDLVSCDASGTCQSNKTFL-----FMAFHPEKEVVYLWTPGKLVAFDLEQRRV 331

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	368
TAIR|locus:2160334	420	AT5G07610 "AT5G07610" [Arabido	0.744	0.652	0.269	2.1e-14
UNIPROTKB|Q6AT88	309	OSJNBa0069I13.11 "Os05g0139300	0.453	0.540	0.347	3.9e-14
TAIR|locus:2076309	389	AT3G10240 "AT3G10240" [Arabido	0.698	0.660	0.246	2.1e-08
TAIR|locus:2059909	295	AT2G16810 "AT2G16810" [Arabido	0.459	0.572	0.311	5.1e-08
TAIR|locus:2100524	390	AT3G52320 "AT3G52320" [Arabido	0.586	0.553	0.253	1.4e-06
TAIR|locus:2058603	307	AT2G23160 "AT2G23160" [Arabido	0.535	0.641	0.255	3.9e-06
TAIR|locus:2202425	389	AT1G47790 "AT1G47790" [Arabido	0.695	0.658	0.242	6.5e-06
TAIR|locus:2150665	418	AT5G03970 "AT5G03970" [Arabido	0.883	0.777	0.218	9.6e-06
TAIR|locus:2141548	383	AT4G09190 "AT4G09190" [Arabido	0.673	0.647	0.241	8.4e-05
TAIR|locus:2157834	359	AT5G49610 "AT5G49610" [Arabido	0.345	0.353	0.295	0.00012

TAIR|locus:2160334 AT5G07610 "AT5G07610" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 84/312 (26%), Positives = 146/312 (46%)

Query:     8 EDLITEILSRLPVKSVVGFKIVSKTWNNLISK-VCIPRILRA--PSPLCGFLFPSTQDSI 64
             +D++ +ILS LP+K+++ FK VSK W +LI+  V   R++++  P P+ GF   S ++ I
Sbjct:    35 DDVLIQILSFLPIKTLLRFKRVSKRWLSLITNPVFSNRVIKSNHPLPISGFFLHSPRE-I 93

Query:    65 GYISYSDNEECGNDGEGFAQXXXXXXXXXXXXYALIDCCNGLILLGSSL--SKH---RYY 119
              Y   S +++  N  +  +               ++   NGL+L   S   S H    YY
Sbjct:    94 KYSFVSLDDDATN--QRISSSLPLWFTDHQTDMIIMQSTNGLLLCKCSCASSNHFNTNYY 151

Query:   120 VCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARM--------DPE--- 168
             V NP TKQ   + +    +  S   LAF P  S HYK+   LR R         D E   
Sbjct:   152 VYNPTTKQYTLLHQIAGHIALS---LAFDPSRSPHYKVF-CLRGRSNNSFSSASDSELYH 207

Query:   169 VDIFSSENKTWITRKVSVKPRRPVSFYVLQ-SVYSRGGI-LYNLTYRSTILRYNIEALSE 226
             ++++SS    W  R+V   P  P +F     SV+  G +  Y  + R   L ++I    E
Sbjct:   208 IEVYSSNEGLW--RRVVPVPTSPSTFIEFSYSVFWNGAVNWYGFSSRDC-LSFDINT-QE 263

Query:   227 AEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGA 286
              +I+ +PD   H  + E +   +  L +   +Q  L  + ++ +   S++    +  S +
Sbjct:   264 IKILPLPD---HEHEDEPLPDPR-ILMFLDESQGNL--YYIEVNNQSSSNLRVYEMESNS 317

Query:   287 RSWILKHSICMD 298
              SW +K+++ ++
Sbjct:   318 SSWSVKYNVDLE 329

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6AT88 OSJNBa0069I13.11 "Os05g0139300 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 187 (70.9 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
 Identities = 64/184 (34%), Positives = 86/184 (46%)

Query:     6 LSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLF----PSTQ 61
             L +DLI +ILSRLP KSV  FK VS  W  LIS     + L  P  L GF+     P   
Sbjct:    19 LPDDLIVDILSRLPAKSVCRFKCVSWRWRRLISHRDHRKKL--PHTLSGFISRYYGPLND 76

Query:    62 DSIGYISYSDNEECGNDGEGFAQXXXXXXXXXXXXYALI---DCCNGLILL----GSSLS 114
             D +  I + D+ + G + E   +            Y  I   DCCNGL+L      S   
Sbjct:    77 DELVSIPHFDSIDGGEEDEEEHRLVPDPSLSFLLGYMSISPKDCCNGLLLCLCCKNSPRD 136

Query:   115 KHRYYVCNPLTKQCVAIPKARE-DVLASPPALAFHPCDSSHYKIIRFLRARMD--PEVDI 171
             +  Y VCNP T++ + +P+  + D LAS   L F P  S ++ +   L         V+I
Sbjct:   137 ESDYVVCNPATQRWIILPEIDDYDQLASI-RLCFDPALSPYFHVFAILEDADGCITGVEI 195

Query:   172 FSSE 175
             FSSE
Sbjct:   196 FSSE 199

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2076309 AT3G10240 "AT3G10240" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 69/280 (24%), Positives = 114/280 (40%)

Query:     9 DLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDS-IGYI 67
             DL++EIL RLP KSV  F+ VSK W+++ ++     +L   SP     F + +   +  I
Sbjct:    30 DLVSEILLRLPEKSVARFRCVSKPWSSITTEPYFINLLTTRSPRLLLCFKANEKFFVSSI 89

Query:    68 -SYSDNEECGNDGEGFAQXXXXXXXXXXXX---YALIDCCNGLILLGSSLSKHRYYVCNP 123
               +    E  N    ++Q               +   +  NGLI    S    R  V NP
Sbjct:    90 PQHRQTFETWNKSHSYSQLIDRYHMEFSEEMNYFPPTESVNGLICFQESA---RLIVWNP 146

Query:   124 LTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDP-EVDIFSSENKTWITR 182
              T+Q + +PK   +       L + P +  H  +     A  D   V    S  K W T 
Sbjct:   147 STRQLLILPKPNGNSNDLTIFLGYDPVEGKHKVMCMEFSATYDTCRVLTLGSAQKLWRTV 206

Query:   183 KVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRY---NIEALSEA-EIIEVPDKNNH 238
             K   K R    +Y   S     G++Y++ Y   +  +   + +  SE  ++IE+P  + H
Sbjct:   207 KTHNKHRS--DYY--DSGRCINGVVYHIAYVKDMCVWVLMSFDVRSEIFDMIELPSSDVH 262

Query:   239 PCDSEVIGLCKGALNYASRN---QSTLLIWQLDDHRHHSN 275
                 +V+    G L    R    ++ + +W L+ H   S+
Sbjct:   263 ---KDVLIDYNGRLACVGREIIEKNGIRLWILEKHNKWSS 299

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2059909 AT2G16810 "AT2G16810" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 57/183 (31%), Positives = 81/183 (44%)

Query:     5 YLSEDLITEILSRLPVKSVVGFKIVSKTWNNLIS-KVCIPRILRAPSPLCGFLFPSTQDS 63
             Y+ +DL+ EIL+RLP KSV+ FK VSK W++L+S +    R L  PS     L+    D 
Sbjct:    40 YIPQDLLIEILTRLPPKSVMRFKCVSKFWSSLLSSRYFCNRFLIVPSQPQPSLYMCLLDR 99

Query:    64 IGYI-SYSDNEECGNDGEGFAQXXXXXXXXXXXXYALIDCCNGLILLGSSLSKHRYYVCN 122
               Y  S   +         F              +  I    G I    +L K R Y  N
Sbjct:   100 YNYSKSLILSSAPSTSPYSFVFDQDLTIRKMGGFFLRI--LRGFIFFTRNL-KARIY--N 154

Query:   123 PLTKQCVAIPKARE-DVLASPP--ALAF--HPCDSSHYKIIRFLRARMDPEVDIFSSENK 177
             P T+Q V +P  +E D++A PP   L F  H   +  YK++  +    D ++    SE  
Sbjct:   155 PTTRQLVILPTIKESDIIAGPPYNILYFICHDPVNDRYKLLCTVSYASDNDLQNLKSE-- 212

Query:   178 TWI 180
              WI
Sbjct:   213 LWI 215

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2100524 AT3G52320 "AT3G52320" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 64/252 (25%), Positives = 109/252 (43%)

Query:     6 LSEDLITEILSRLPVKSVVGFKIVSKTWNNLI-SKVCIPRILRAPSPLCGFLF-PSTQDS 63
             + E+++ +IL RLP KS++ FK VSK W +LI S+    R  +  SP C F +    ++ 
Sbjct:    27 IPEEMLIDILIRLPAKSLMRFKCVSKLWLSLITSRYFTNRFFKPSSPSCLFAYLVDRENQ 86

Query:    64 IGYISYSDNEECGND-GEGFAQXXXXXXXXXXXXYALIDCCNGLILLGSSLSKHRYYVCN 122
               Y+    +    +D  +                  L++   GL+   +     R  VCN
Sbjct:    87 SKYLLLQSSSSSRHDHSDTSVSVIDQHSTIPIMGGYLVNAARGLLCYRTG---RRVKVCN 143

Query:   123 PLTKQCVAIP--KAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK--- 177
             P T+Q V +P  +++ +V        FH      YK++  L   +  E  +  SE++   
Sbjct:   144 PSTRQIVELPIMRSKTNVWNWFGHDPFH----DEYKVLS-LFWEVTKEQTVVRSEHQVLV 198

Query:   178 -----TWITRKVSVKPRRPVSFYVLQSVYSRG----GILYNLTY----RSTILRYNIEAL 224
                  +W   K    P RP  F+     YSRG    G+LY        R  ++ +++ + 
Sbjct:   199 LGVGASWRNTKSHHTPHRP--FHP----YSRGMTIDGVLYYSARTDANRCVLMSFDLSS- 251

Query:   225 SEAEIIEVPDKN 236
              E  +IE+P +N
Sbjct:   252 EEFNLIELPFEN 263

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2058603 AT2G23160 "AT2G23160" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 56/219 (25%), Positives = 87/219 (39%)

Query:     6 LSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRI-LRAPSPLCGFLFPSTQDSI 64
             +S DLI EILSR+P KSV  F+ VSK W ++I +     + L   SP    LF +  D +
Sbjct:     7 ISIDLIAEILSRVPSKSVARFRCVSKPWASMIRRPYFTELFLTRSSPKPCILFATVADGV 66

Query:    65 -GYIS-----YSDNEECGNDGEG-----FAQXXXXXXXXXXXXYALIDCCNGLILLGSSL 113
               + S     Y  +              F              Y      +GLI L    
Sbjct:    67 WSFFSLPQYPYEKSSSASVAASAKFHVKFPPNNMRIGHNSDRRYFSYGYTSGLIYLYGDS 126

Query:   114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKII--RFLRARMDPEVDI 171
             S  R  +CNP T +   +P  +     +   L F P +   +KI+   +L    D ++  
Sbjct:   127 SDDRSVICNPYTGEYAILPYLQR-YRKTYSFLVFEPIEKQ-FKILFMAYLSGDRDHKILT 184

Query:   172 FSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNL 210
               + N  W T + S++      + ++    S  G+LY L
Sbjct:   185 VGTGNMKWRTIRCSLR------YEIVSEGVSINGVLYYL 217

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202425 AT1G47790 "AT1G47790" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 6.5e-06, P = 6.5e-06
 Identities = 67/276 (24%), Positives = 116/276 (42%)

Query:     9 DLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLC-GFLFPSTQ-DSIGY 66
             DL +EIL RLPVKSVV F+ VSK W+++I+     +     S      LF   Q D +  
Sbjct:    28 DLASEILLRLPVKSVVRFRCVSKLWSSIITDPYFIKTYETQSSTRQSLLFCFKQSDKLFV 87

Query:    67 ISYSDNEECGNDGEGFAQXXXXXXXXXXXXY-ALIDCCNGLILLGSSLSKHRYYVCNPLT 125
              S   +    N     A             Y +  +  +GLI      +     V NP  
Sbjct:    88 FSIPKHHYDSNSSSQAAIDRFQVKLPQEFSYPSPTESVHGLICFHVLAT---VIVWNPSM 144

Query:   126 KQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFS--SENKTWITRK 183
             +Q + +PK R+        L + P +  H K++   R R   E  + +  S  K+W T K
Sbjct:   145 RQFLTLPKPRKSWKELTVFLGYDPIEGKH-KVVCLPRNRTCDECQVLTLGSAQKSWRTVK 203

Query:   184 VSVKPRRPVSFY--VLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCD 241
                K R     +   ++ V      +Y+ T    I+ +++++  + ++I++P +N +   
Sbjct:   204 TKHKHRSTNDTWGRCIKGVVYYIAYVYH-TRVWCIMSFHVKS-EKFDMIKLPLENIY--- 258

Query:   242 SEVIGLCKGALNYASR----NQSTLLIWQLDDHRHH 273
              +V+   +G L    +    N   + +W L+D   H
Sbjct:   259 RDVMINYEGRLACVDKLYTLNNDGIRLWILEDAEKH 294

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2150665 AT5G03970 "AT5G03970" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 9.6e-06, P = 9.6e-06
 Identities = 79/362 (21%), Positives = 147/362 (40%)

Query:     3 QIYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRA---PS-PLCGFLFP 58
             ++  S D + EIL  LP +++    +VSK W  +I+  C      A   P+  L GF   
Sbjct:    21 EVLNSNDTMCEILILLPPETIYKLILVSKRWLEIIASPCFRHTYLAKWKPNFELIGFFVC 80

Query:    59 STQDSIGYISYSDNEECGND-----GEGFAQXXXXXXXXXXXXYALIDCCNGLILLGSSL 113
             S+      I  +                               Y  ID  +GL+L G   
Sbjct:    81 SSMYLGRRIDGTRRPRAEPSLPLLSTSSIGDEIESSGILKKLGY-YIDSADGLLLCGRH- 138

Query:   114 SKHRYYVCNPLTKQCVAIPKARE--DVLASPPALAFHPCDSSHYKIIR-----FLRARMD 166
                 YY+ +P T++   +P+ R   + L         P     YK++R     F      
Sbjct:   139 -PKAYYLWDPSTQKQQQLPRPRVHFEELCMSLISEDSPDQGFSYKVVRAECVAFPVNSTK 197

Query:   167 PEVDIFSSENKTW-ITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALS 225
              +V+ FSS+  TW  +  + ++P   +S +    V    G++Y       I  Y+  +  
Sbjct:   198 VKVETFSSKTSTWSYSELICLEPLS-LSPWTPGRVIK--GVVYWHARGGKIAIYDSNSEE 254

Query:   226 EA-EIIEVPDKNNHPCDSEVIGLCK-GALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAA 283
             +  ++I++P   ++  D +V+G    G+L Y   N+S + +W+L+   +    +   K  
Sbjct:   255 KRIDVIKLPKTYDY--DEQVLGETDDGSLQYGWSNKSVMEVWKLEKVGNVLEWNLLFKVN 312

Query:   284 SGARSWILKHSIC--MDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCD-MIYRYHLKTNKM 340
               A  W +  ++      W  +  +  L   +N    SD++++  CD  I+ YH +T ++
Sbjct:   313 FKAM-WKMNQAVATRFSTWTKETQLLAL---FN--QKSDLVYI-RCDTQIFIYHTETKRV 365

Query:   341 EL 342
             E+
Sbjct:   366 EV 367

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2141548 AT4G09190 "AT4G09190" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 8.4e-05, P = 8.4e-05
 Identities = 67/277 (24%), Positives = 116/277 (41%)

Query:     9 DLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPR--ILRAPSPL-CGFLFPSTQDSIG 65
             DLI EI+S LP KS+V F+ VSK W+++I+        + R+ S   C  L     D + 
Sbjct:    25 DLIVEIVSSLPAKSIVRFRSVSKLWSSIITTPDFTSSVVTRSLSSRPCVLLIFQKHDKLF 84

Query:    66 YISYSDNEE--CGNDGEGFAQXXXXXXXXXXXXYALIDCCNGLILLGSSLSKHRYYVCNP 123
             + +   +++  C N  E F                  +  +GLI L +S +    ++ NP
Sbjct:    85 FFASPVHQKKTCPNV-ENFQYTIPNNGKLQR-----CESVHGLIYLETSTNV--MFIRNP 136

Query:   124 LTKQCVAIPKAREDVLASPPALAFHPCD--SSHYKIIRFLRARMDPEVDIFS-SENKTWI 180
             +TK    +PK   D     P   F   D  +  YK++  L+ R   ++ I +    ++W 
Sbjct:   137 ITKSFFTLPKL--DSKEGRPLTGFLGYDPINGKYKVLCILKERN--KIGILTLGAQESWR 192

Query:   181 TRKVSVKPRRPVSFYV--LQSV-YSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNN 237
                        V+ Y   +  V Y  G     L     I+ +++ +  +  +I+ P K++
Sbjct:   193 ILSKGFLSHYKVTGYAKCIDGVIYYEGSFGDGLRQELAIMSFDLRS-EKFSLIKHPKKSS 251

Query:   238 -HPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHH 273
                C S      +G L   S   S + +W L+D  +H
Sbjct:   252 IATCWSSY----EGRLALVSSIASGVSLWILEDADNH 284

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157834 AT5G49610 "AT5G49610" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 0.00012, P = 0.00012
 Identities = 42/142 (29%), Positives = 60/142 (42%)

Query:     8 EDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSIGYI 67
             +++I +IL+RLPVKS+  FK V K+W  L S      +    S     L     DS   I
Sbjct:    11 DEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQLSVKEQLLVAEVSDSSSLI 70

Query:    68 SYSDNEECGNDGEGFAQXXXXXXXXXXXXYALIDCCNGLILLGSSLSKHRYYVCNPLTKQ 127
                    C ++  G ++                   NGL+   S   K  YYVCNP T++
Sbjct:    71 -------CVDNLRGVSELSLDFVRDRVRIRV---SSNGLLCCSSIPEKGVYYVCNPSTRE 120

Query:   128 CVAIPKAREDVLASPPALAFHP 149
                +PK+RE      P   F+P
Sbjct:   121 YRKLPKSRER-----PVTRFYP 137

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	368
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	2e-05
pfam00646	48	pfam00646, F-box, F-box domain	1e-04
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	2e-04

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 15/126 (11%)

Query: 100 IDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPK---AREDVLASPPALAFHPCDSSHYK 156
           +  C+GLI         R  V NP T Q   +P     R +  +    L + P +   YK
Sbjct: 1   VVPCDGLI---CFSYGKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQ-YK 56

Query: 157 IIRFLRARMDP---EVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYR 213
           ++ F     +    E  +++  + +W T + S       S  V        G+LY L Y 
Sbjct: 57  VLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGV-----CINGVLYYLAYT 111

Query: 214 STILRY 219
                 
Sbjct: 112 LKTNPD 117

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 6  LSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI 42
          L +DL+ EILSRL  K ++   +VSK W +L+  + +
Sbjct: 6  LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKL 42

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 6  LSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI 42
          L ++++ EILS+L  K ++  + VS+ W +LI     
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	368
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.98
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.61
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	99.54
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.48
PHA02713	557	hypothetical protein; Provisional	99.28
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.19
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.07
PHA02713	557	hypothetical protein; Provisional	99.07
PHA03098	534	kelch-like protein; Provisional	99.05
PHA02790	480	Kelch-like protein; Provisional	99.05
PLN02153	341	epithiospecifier protein	99.01
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.85
PLN02193	470	nitrile-specifier protein	98.8
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.78
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.76
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.71
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.7
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.6
PHA03098	534	kelch-like protein; Provisional	98.57
PLN02153	341	epithiospecifier protein	98.54
PHA02790	480	Kelch-like protein; Provisional	98.53
PLN02193	470	nitrile-specifier protein	98.5
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.39
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.33
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.24
KOG4693	392	consensus Uncharacterized conserved protein, conta	97.8
KOG1230	521	consensus Protein containing repeated kelch motifs	97.65
KOG4693	392	consensus Uncharacterized conserved protein, conta	97.07
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.97
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	96.68
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	96.32
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.16
KOG1230	521	consensus Protein containing repeated kelch motifs	96.06
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.59
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	95.44
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	95.27
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	94.1
PF07762	131	DUF1618: Protein of unknown function (DUF1618); In	93.47
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.39
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	93.15
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	93.13
PF13964	50	Kelch_6: Kelch motif	93.04
smart00284	255	OLF Olfactomedin-like domains.	92.93
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	92.93
PF13964	50	Kelch_6: Kelch motif	92.45
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	91.73
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	91.1
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	90.74
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	89.63
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.18
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	88.49
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	88.33
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	88.27
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	88.06
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	86.51
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	86.41
KOG4341	483	consensus F-box protein containing LRR [General fu	85.88
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	85.86
PRK04792	448	tolB translocation protein TolB; Provisional	85.28
PRK00178	430	tolB translocation protein TolB; Provisional	84.17
smart00612	47	Kelch Kelch domain.	83.99
KOG1273	405	consensus WD40 repeat protein [General function pr	83.78
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	82.11
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	81.92
KOG1310	758	consensus WD40 repeat protein [General function pr	81.84
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	80.62
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	80.56

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.98  E-value=3.6e-30  Score=228.70  Aligned_cols=212  Identities=20%  Similarity=0.340  Sum_probs=159.2

Q ss_pred             EecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcC---CCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEe
Q 043460          100 IDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKARED---VLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFS  173 (368)
Q Consensus       100 ~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~---~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vys  173 (368)
                      +++||||||+..   ...++||||+||+++.||+++..   ......+||||+ .+++|||+++....   ....++||+
T Consensus         1 ~~sCnGLlc~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~-~~~~YKVv~~~~~~~~~~~~~~~Vys   76 (230)
T TIGR01640         1 VVPCDGLICFSY---GKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDP-IEKQYKVLCFSDRSGNRNQSEHQVYT   76 (230)
T ss_pred             CcccceEEEEec---CCcEEEECCCCCCEEecCCCCCcccccccceEEEeecc-cCCcEEEEEEEeecCCCCCccEEEEE
Confidence            478999999885   26899999999999999976532   111257999999 57899999997642   457899999


Q ss_pred             CCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeC------CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe
Q 043460          174 SENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYR------STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL  247 (368)
Q Consensus       174 s~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~------~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~  247 (368)
                      +++++|+......+    .......+|++ ||.+||++..      ..|++||+++|+|++.+++|...........|++
T Consensus        77 ~~~~~Wr~~~~~~~----~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~  151 (230)
T TIGR01640        77 LGSNSWRTIECSPP----HHPLKSRGVCI-NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLIN  151 (230)
T ss_pred             eCCCCccccccCCC----CccccCCeEEE-CCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEE
Confidence            99999999873221    11122238999 9999999862      1799999999999933888875432222467899


Q ss_pred             eCCeEEEEEEC--CCeEEEEEEccC-CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEE
Q 043460          248 CKGALNYASRN--QSTLLIWQLDDH-RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFL  324 (368)
Q Consensus       248 ~~G~L~~~~~~--~~~~~IW~l~~~-~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  324 (368)
                      .+|+|+++...  ..+++||+|+++ ++               +|++..+|+...+.....   ...+.++..++++++.
T Consensus       152 ~~G~L~~v~~~~~~~~~~IWvl~d~~~~---------------~W~k~~~i~~~~~~~~~~---~~~~~~~~~~g~I~~~  213 (230)
T TIGR01640       152 YKGKLAVLKQKKDTNNFDLWVLNDAGKQ---------------EWSKLFTVPIPPLPDLVD---DNFLSGFTDKGEIVLC  213 (230)
T ss_pred             ECCEEEEEEecCCCCcEEEEEECCCCCC---------------ceeEEEEEcCcchhhhhh---heeEeEEeeCCEEEEE
Confidence            99999999884  356999999987 44               799999998543332211   1457788878887777


Q ss_pred             eeC---CeEEEEECCCC
Q 043460          325 GSC---DMIYRYHLKTN  338 (368)
Q Consensus       325 ~~~---~~~~~ydl~t~  338 (368)
                      ...   ..++.||++|+
T Consensus       214 ~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       214 CEDENPFYIFYYNVGEN  230 (230)
T ss_pred             eCCCCceEEEEEeccCC
Confidence            643   34999999885

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.61  E-value=3.9e-13  Score=124.31  Aligned_cols=297  Identities=12%  Similarity=0.150  Sum_probs=159.1

Q ss_pred             CCCCHHHHHHHHcCCC-chhhHHHhhhhHHHHhhhcCCchhhhhcCCCCCceEeecc-CCCCCCee-eccCCCCCCCCCC
Q 043460            4 IYLSEDLITEILSRLP-VKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPS-TQDSIGYI-SYSDNEECGNDGE   80 (368)
Q Consensus         4 ~~LP~Dll~~IL~rLp-~~~l~r~r~Vck~Wr~li~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~-~f~~~~~~~~~~~   80 (368)
                      +.||+|||..|..||| ..+++|||+|||+||+.+....-...+  ++.++.++.+. ...+.... .+...++   .. 
T Consensus         5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-   78 (373)
T PLN03215          5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGKKNPF--RTRPLILFNPINPSETLTDDRSYISRPG---AF-   78 (373)
T ss_pred             hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccccCCc--ccccccccCcccCCCCcccccccccccc---ce-
Confidence            5799999999999998 889999999999999988742100001  11111111110 01110000 0000000   00 


Q ss_pred             cccccccccCCCCCCCcEEEecCCcEEEEeec-CCCeeEEEEcccCccceecCCCCcCC-------CCCCCee-EEcCC-
Q 043460           81 GFAQSLTSLLPSESLPYALIDCCNGLILLGSS-LSKHRYYVCNPLTKQCVAIPKAREDV-------LASPPAL-AFHPC-  150 (368)
Q Consensus        81 ~~~~~~~~~~p~~~~~~~~~~s~~Glll~~~~-~~~~~~~v~NP~T~~~~~lP~~~~~~-------~~~~~~l-~~d~~-  150 (368)
                       +....-+..+      ..-++..|+|.-... .....+.+.||+++....+|+.....       ....+.+ ..+.. 
T Consensus        79 -ls~~~~~r~~------~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~~  151 (373)
T PLN03215         79 -LSRAAFFRVT------LSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKRR  151 (373)
T ss_pred             -eeeeEEEEee------cCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEeccccc
Confidence             1111011111      001356899987654 25578899999999988877532110       0011111 00100 


Q ss_pred             -CCCCe----------------EEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeC
Q 043460          151 -DSSHY----------------KIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYR  213 (368)
Q Consensus       151 -~~~~y----------------kvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~  213 (368)
                       ....|                -|+.+... +  .+....  .++|......       .....+-++. +|.+|.+...
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~-g--~l~~w~--~~~Wt~l~~~-------~~~~~DIi~~-kGkfYAvD~~  218 (373)
T PLN03215        152 ETRPGYQRSALVKVKEGDNHRDGVLGIGRD-G--KINYWD--GNVLKALKQM-------GYHFSDIIVH-KGQTYALDSI  218 (373)
T ss_pred             ccccceeEEEEEEeecCCCcceEEEEEeec-C--cEeeec--CCeeeEccCC-------CceeeEEEEE-CCEEEEEcCC
Confidence             00112                22222211 1  111111  4677776521       1133456888 9999999766


Q ss_pred             CeEEEEEcCCCeEEEEEeCCC-CCC--CCCCceeEEeeCCeEEEEEEC---C--------------CeEEEEEEccCCCC
Q 043460          214 STILRYNIEALSEAEIIEVPD-KNN--HPCDSEVIGLCKGALNYASRN---Q--------------STLLIWQLDDHRHH  273 (368)
Q Consensus       214 ~~il~fD~~~~~~~~~~~lP~-~~~--~~~~~~~l~~~~G~L~~~~~~---~--------------~~~~IW~l~~~~~~  273 (368)
                      +.+.++|..-+.-+ +-+.-. ...  .......++++.|.|++|...   +              ..++|+.++...+ 
T Consensus       219 G~l~~i~~~l~i~~-v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~-  296 (373)
T PLN03215        219 GIVYWINSDLEFSR-FGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELA-  296 (373)
T ss_pred             CeEEEEecCCceee-ecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCC-
Confidence            88888885432222 111111 111  111246788999999999871   1              2478888887655 


Q ss_pred             CCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEE--E-ecCCCEEEEeeCCeEEEEECCCCeEEEec
Q 043460          274 SNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYN--I-HPNSDIIFLGSCDMIYRYHLKTNKMELFS  344 (368)
Q Consensus       274 ~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~--~-~~~~~~v~~~~~~~~~~ydl~t~~~~~v~  344 (368)
                                    +|+++.+++-+.+--...  ....+.+  + .-++++||+.++....+||++..++.-+.
T Consensus       297 --------------~WveV~sLgd~aLFlG~~--~s~sv~a~e~pG~k~NcIYFtdd~~~~v~~~~dg~~~~~~  354 (373)
T PLN03215        297 --------------KWMEVKTLGDNAFVMATD--TCFSVLAHEFYGCLPNSIYFTEDTMPKVFKLDNGNGSSIE  354 (373)
T ss_pred             --------------cEEEecccCCeEEEEECC--ccEEEecCCCCCccCCEEEEECCCcceEEECCCCCccceE
Confidence                          899999997332221111  1122221  1 22579999999999999999999965543

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=99.54  E-value=7.5e-13  Score=111.03  Aligned_cols=146  Identities=16%  Similarity=0.223  Sum_probs=96.8

Q ss_pred             eEEEeCCeEEEEEe----CC--eEEEEEcCCCeE-EEEEeCCCCCCCCCCceeEEee-CCeEEEEEE--CCCeEEEEEEc
Q 043460          199 SVYSRGGILYNLTY----RS--TILRYNIEALSE-AEIIEVPDKNNHPCDSEVIGLC-KGALNYASR--NQSTLLIWQLD  268 (368)
Q Consensus       199 ~v~~~~G~lywl~~----~~--~il~fD~~~~~~-~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~--~~~~~~IW~l~  268 (368)
                      +|++ ||++||++.    ..  .|++||+++|+| + .+++|...........|+.. +++||++..  ....++||+|+
T Consensus         1 gV~v-nG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~-~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~   78 (164)
T PF07734_consen    1 GVFV-NGALHWLAYDENNDEKDFILSFDLSTEKFGR-SLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK   78 (164)
T ss_pred             CEEE-CCEEEeeEEecCCCCceEEEEEeccccccCC-EECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence            5899 999999998    11  799999999999 7 89999876533335566544 779999975  34469999999


Q ss_pred             cCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe---e-C---CeEEEEECCCCeEE
Q 043460          269 DHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG---S-C---DMIYRYHLKTNKME  341 (368)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~-~---~~~~~ydl~t~~~~  341 (368)
                      +++.            +..+|+|..+|+............... +-+..++++++..   . .   ..++.++ +.+..+
T Consensus        79 ~~~~------------~~~SWtK~~~i~~~~~~~~~~~~~~~~-~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~  144 (164)
T PF07734_consen   79 KYGY------------GKESWTKLFTIDLPPLPSLFFHFRNPS-FFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFI  144 (164)
T ss_pred             eecc------------CcceEEEEEEEecCCCCCcccccccce-EEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEE
Confidence            7521            022999999999554443221000011 2234444444443   1 1   4688888 778888


Q ss_pred             Eecc-CCCcceeeeeeeeec
Q 043460          342 LFST-RSPLHLYRLALLSSC  360 (368)
Q Consensus       342 ~v~~-~~~~~~~~~~py~p~  360 (368)
                      ++.. ........++-|+||
T Consensus       145 ~~~~~~~~~~~~~~~~YvpS  164 (164)
T PF07734_consen  145 EVDIEDKSSCWPSICNYVPS  164 (164)
T ss_pred             EcccccCCCCCCCEEEECCC
Confidence            8876 222345567888886

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.48  E-value=1.1e-12  Score=105.37  Aligned_cols=108  Identities=23%  Similarity=0.445  Sum_probs=80.8

Q ss_pred             eEEEeCCeEEEEEe-----CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC----CeEEEEEEcc
Q 043460          199 SVYSRGGILYNLTY-----RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ----STLLIWQLDD  269 (368)
Q Consensus       199 ~v~~~~G~lywl~~-----~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~----~~~~IW~l~~  269 (368)
                      ++++ ||.+||++.     ...|++||+++|+|+ .+++|...........|.+.+|+|+++....    ..++||+|++
T Consensus         1 gici-nGvly~~a~~~~~~~~~IvsFDv~~E~f~-~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD   78 (129)
T PF08268_consen    1 GICI-NGVLYWLAWSEDSDNNVIVSFDVRSEKFR-FIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED   78 (129)
T ss_pred             CEEE-CcEEEeEEEECCCCCcEEEEEEcCCceEE-EEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence            5789 999999987     489999999999999 9999922222233678999999999998832    3599999998


Q ss_pred             C-CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEE
Q 043460          270 H-RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFL  324 (368)
Q Consensus       270 ~-~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  324 (368)
                      + ++               +|++.+.+-......... ...+.+.++...|++|+.
T Consensus        79 ~~k~---------------~Wsk~~~~lp~~~~~~~~-~~~~~~~g~~~~Geiv~~  118 (129)
T PF08268_consen   79 YEKQ---------------EWSKKHIVLPPSWQHFVH-DCDFSFVGVTDTGEIVFA  118 (129)
T ss_pred             cccc---------------eEEEEEEECChHHhcccC-CcEEEEEEEcCCCEEEEE
Confidence            8 44               899887643222211110 034678888889999988

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PHA02713 hypothetical protein; Provisional

Probab=99.28  E-value=2.9e-10  Score=113.42  Aligned_cols=204  Identities=10%  Similarity=0.103  Sum_probs=130.5

Q ss_pred             ecCCcEEEEeecC-----CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEE
Q 043460          101 DCCNGLILLGSSL-----SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIF  172 (368)
Q Consensus       101 ~s~~Glll~~~~~-----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vy  172 (368)
                      +..+|.|.+.++.     ....++.+||.+++|..+|+++....  .++.+.     -+-+|+.++...   ....+++|
T Consensus       300 a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~--~~~~~~-----~~g~IYviGG~~~~~~~~sve~Y  372 (557)
T PHA02713        300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC--RFSLAV-----IDDTIYAIGGQNGTNVERTIECY  372 (557)
T ss_pred             EEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh--ceeEEE-----ECCEEEEECCcCCCCCCceEEEE
Confidence            3445555554431     13468899999999999999874332  122221     122566555533   23579999


Q ss_pred             eCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeC------------------------CeEEEEEcCCCeEEE
Q 043460          173 SSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYR------------------------STILRYNIEALSEAE  228 (368)
Q Consensus       173 ss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~------------------------~~il~fD~~~~~~~~  228 (368)
                      ++.+++|+..+.++.+     .....++.+ +|.||.+++.                        ..+.+||+.+++|+.
T Consensus       373 dp~~~~W~~~~~mp~~-----r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~  446 (557)
T PHA02713        373 TMGDDKWKMLPDMPIA-----LSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET  446 (557)
T ss_pred             ECCCCeEEECCCCCcc-----cccccEEEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence            9999999998754321     122346788 9999999862                        248899999999993


Q ss_pred             EEeCCCCCCCCCCceeEEeeCCeEEEEEEC-CCe-E--EEEEEccCC-CCCCCCCCccCCCCCCceEEEEEeeecccccc
Q 043460          229 IIEVPDKNNHPCDSEVIGLCKGALNYASRN-QST-L--LIWQLDDHR-HHSNSHGSNKAASGARSWILKHSICMDEWGNK  303 (368)
Q Consensus       229 ~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~-~~~-~--~IW~l~~~~-~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~  303 (368)
                      .-++|....    ...++..+|+||+++.. +.. .  .+-..+-.. +               +|+.+..|+.+...  
T Consensus       447 v~~m~~~r~----~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~---------------~W~~~~~m~~~r~~--  505 (557)
T PHA02713        447 LPNFWTGTI----RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN---------------GWELITTTESRLSA--  505 (557)
T ss_pred             cCCCCcccc----cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCC---------------CeeEccccCccccc--
Confidence            334554432    33678889999999873 211 1  233444433 4               89999888743322  


Q ss_pred             CccccceEEEEEecCCCEEEEee----CCeEEEEECCCCeEEEeccCC
Q 043460          304 LHVFGLTRFYNIHPNSDIIFLGS----CDMIYRYHLKTNKMELFSTRS  347 (368)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~ydl~t~~~~~v~~~~  347 (368)
                               .++..-++.||+.+    ...+-+||++|++|+.++...
T Consensus       506 ---------~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~  544 (557)
T PHA02713        506 ---------LHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH  544 (557)
T ss_pred             ---------ceeEEECCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence                     12222245677662    135899999999999999833

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.19  E-value=1.2e-09  Score=108.91  Aligned_cols=203  Identities=11%  Similarity=0.104  Sum_probs=135.3

Q ss_pred             EecCCcEEEEeecC-----CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEE
Q 043460          100 IDCCNGLILLGSSL-----SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDI  171 (368)
Q Consensus       100 ~~s~~Glll~~~~~-----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~v  171 (368)
                      ++..+|.|.+.++.     ....+..+||.+++|..+|++...+.  .++.+     .-..+|++++...   ....+|.
T Consensus       328 ~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~--~~~v~-----~l~g~iYavGG~dg~~~l~svE~  400 (571)
T KOG4441|consen  328 VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS--DFGVA-----VLDGKLYAVGGFDGEKSLNSVEC  400 (571)
T ss_pred             EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc--cceeE-----EECCEEEEEeccccccccccEEE
Confidence            44445555544431     23578999999999999999985332  22222     1244566665544   4557999


Q ss_pred             EeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe----C---CeEEEEEcCCCeEEEEEeCCCCCCCCCCcee
Q 043460          172 FSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY----R---STILRYNIEALSEAEIIEVPDKNNHPCDSEV  244 (368)
Q Consensus       172 yss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~----~---~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~  244 (368)
                      |+++++.|..++.+....     .....+.+ +|.||-+++    .   ..+..||+.+++|+...+++.....    ..
T Consensus       401 YDp~~~~W~~va~m~~~r-----~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~----~g  470 (571)
T KOG4441|consen  401 YDPVTNKWTPVAPMLTRR-----SGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG----FG  470 (571)
T ss_pred             ecCCCCcccccCCCCcce-----eeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc----ce
Confidence            999999999998653311     22346777 999999998    2   6799999999999944455554433    35


Q ss_pred             EEeeCCeEEEEEECCCeE---EEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCE
Q 043460          245 IGLCKGALNYASRNQSTL---LIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDI  321 (368)
Q Consensus       245 l~~~~G~L~~~~~~~~~~---~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (368)
                      ++..+|+||+++..+..-   .+=..+-..+               +|+.+..|..+.-.           .++..-++.
T Consensus       471 ~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~---------------~W~~v~~m~~~rs~-----------~g~~~~~~~  524 (571)
T KOG4441|consen  471 VAVLNGKIYVVGGFDGTSALSSVERYDPETN---------------QWTMVAPMTSPRSA-----------VGVVVLGGK  524 (571)
T ss_pred             EEEECCEEEEECCccCCCccceEEEEcCCCC---------------ceeEcccCcccccc-----------ccEEEECCE
Confidence            889999999999843221   2222333244               89999777643221           233333566


Q ss_pred             EEEe-------eCCeEEEEECCCCeEEEecc
Q 043460          322 IFLG-------SCDMIYRYHLKTNKMELFST  345 (368)
Q Consensus       322 v~~~-------~~~~~~~ydl~t~~~~~v~~  345 (368)
                      +|+.       .-..+-.||++|++|+.+..
T Consensus       525 ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  525 LYAVGGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             EEEEecccCccccceeEEcCCCCCceeeCCC
Confidence            7776       23579999999999999877

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.07  E-value=6.7e-09  Score=103.52  Aligned_cols=187  Identities=12%  Similarity=0.145  Sum_probs=125.6

Q ss_pred             eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC----CCcEEEEEeCCCCCceeccccCCCCCc
Q 043460          116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR----MDPEVDIFSSENKTWITRKVSVKPRRP  191 (368)
Q Consensus       116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~----~~~~~~vyss~~~~W~~~~~~~~~~~p  191 (368)
                      ..+..+||.+++|..+.+++....  ..+.+.-.     -+|+.++...    ....+++|++.++.|...+.+...+  
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~--~~~~~~~~-----~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R--  371 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRC--RVGVAVLN-----GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR--  371 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccc--cccEEEEC-----CEEEEEccccCCCcccceEEEecCCCCceeccCCccCcc--
Confidence            567799999999999998884333  22333211     1555555443    3568999999999999987543321  


Q ss_pred             eeeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC-CCeEEE
Q 043460          192 VSFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN-QSTLLI  264 (368)
Q Consensus       192 ~~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~-~~~~~I  264 (368)
                         .....+.+ +|.||.+++      -..+..||+.+.+|..+-+++....    ....++.+|+||+++.. ...-.+
T Consensus       372 ---~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~----~~gv~~~~g~iYi~GG~~~~~~~l  443 (571)
T KOG4441|consen  372 ---SDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS----GHGVAVLGGKLYIIGGGDGSSNCL  443 (571)
T ss_pred             ---ccceeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCccee----eeEEEEECCEEEEEcCcCCCcccc
Confidence               22335777 999999998      3569999999999993444665332    34678889999999983 222122


Q ss_pred             EE---EccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEEEE
Q 043460          265 WQ---LDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYRYH  334 (368)
Q Consensus       265 W~---l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~yd  334 (368)
                      =.   .+-..+               .|+.+..|..+...           .++.--++.||..+       ...+-+||
T Consensus       444 ~sve~YDP~t~---------------~W~~~~~M~~~R~~-----------~g~a~~~~~iYvvGG~~~~~~~~~VE~yd  497 (571)
T KOG4441|consen  444 NSVECYDPETN---------------TWTLIAPMNTRRSG-----------FGVAVLNGKIYVVGGFDGTSALSSVERYD  497 (571)
T ss_pred             ceEEEEcCCCC---------------ceeecCCccccccc-----------ceEEEECCEEEEECCccCCCccceEEEEc
Confidence            22   222244               89999988854322           12222345677662       23489999


Q ss_pred             CCCCeEEEecc
Q 043460          335 LKTNKMELFST  345 (368)
Q Consensus       335 l~t~~~~~v~~  345 (368)
                      ++|++|+.++.
T Consensus       498 p~~~~W~~v~~  508 (571)
T KOG4441|consen  498 PETNQWTMVAP  508 (571)
T ss_pred             CCCCceeEccc
Confidence            99999999985

>PHA02713 hypothetical protein; Provisional

Probab=99.07  E-value=9.1e-09  Score=102.73  Aligned_cols=186  Identities=17%  Similarity=0.103  Sum_probs=119.0

Q ss_pred             eEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC----CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460          117 RYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR----MDPEVDIFSSENKTWITRKVSVKPRRPV  192 (368)
Q Consensus       117 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~----~~~~~~vyss~~~~W~~~~~~~~~~~p~  192 (368)
                      .+..+||.+++|..+++++....  ..+.+.     -+-+|+.++...    ....++.|++.++.|...+.+..+   .
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~--~~~~a~-----l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~---R  342 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHII--NYASAI-----VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN---R  342 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCcccc--ceEEEE-----ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch---h
Confidence            56789999999999998874332  111111     122555555432    235689999999999988754221   1


Q ss_pred             eeeccceEEEeCCeEEEEEeC------CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCe-----
Q 043460          193 SFYVLQSVYSRGGILYNLTYR------STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQST-----  261 (368)
Q Consensus       193 ~~~~~~~v~~~~G~lywl~~~------~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~-----  261 (368)
                        .....+.+ +|.||.+++.      ..+..||+.+.+|...-++|.....    ..++..+|+|++++.....     
T Consensus       343 --~~~~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~----~~~~~~~g~IYviGG~~~~~~~~~  415 (557)
T PHA02713        343 --CRFSLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSS----YGMCVLDQYIYIIGGRTEHIDYTS  415 (557)
T ss_pred             --hceeEEEE-CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccc----ccEEEECCEEEEEeCCCccccccc
Confidence              22346888 9999999972      3589999999999944456654432    3566789999999873211     


Q ss_pred             ----------------EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe
Q 043460          262 ----------------LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG  325 (368)
Q Consensus       262 ----------------~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  325 (368)
                                      -.+...+-..+               .|+.+..|+.+....        . +++.  ++.||+.
T Consensus       416 ~~~~~~~~~~~~~~~~~~ve~YDP~td---------------~W~~v~~m~~~r~~~--------~-~~~~--~~~IYv~  469 (557)
T PHA02713        416 VHHMNSIDMEEDTHSSNKVIRYDTVNN---------------IWETLPNFWTGTIRP--------G-VVSH--KDDIYVV  469 (557)
T ss_pred             ccccccccccccccccceEEEECCCCC---------------eEeecCCCCcccccC--------c-EEEE--CCEEEEE
Confidence                            12333333334               899887775332221        1 1222  3456665


Q ss_pred             eC--------CeEEEEECCC-CeEEEecc
Q 043460          326 SC--------DMIYRYHLKT-NKMELFST  345 (368)
Q Consensus       326 ~~--------~~~~~ydl~t-~~~~~v~~  345 (368)
                      ++        ..+.+||+++ ++|+.+..
T Consensus       470 GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~  498 (557)
T PHA02713        470 CDIKDEKNVKTCIFRYNTNTYNGWELITT  498 (557)
T ss_pred             eCCCCCCccceeEEEecCCCCCCeeEccc
Confidence            22        2478999999 89999887

>PHA03098 kelch-like protein; Provisional

Probab=99.05  E-value=2.1e-08  Score=100.17  Aligned_cols=187  Identities=13%  Similarity=0.132  Sum_probs=120.5

Q ss_pred             eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460          116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRRPV  192 (368)
Q Consensus       116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~p~  192 (368)
                      ..++.+||.|++|..+|+++....  .++.+.-     +-+|+.++...   ....+++|+..+++|+..+..+.+   .
T Consensus       311 ~~v~~yd~~~~~W~~~~~~~~~R~--~~~~~~~-----~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~---r  380 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVPELIYPRK--NPGVTVF-----NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP---R  380 (534)
T ss_pred             ccEEEEeCCCCeeeECCCCCcccc--cceEEEE-----CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC---C
Confidence            368899999999999998773322  1222211     12355554432   345789999999999987643221   1


Q ss_pred             eeeccceEEEeCCeEEEEEeC-------CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC--C---
Q 043460          193 SFYVLQSVYSRGGILYNLTYR-------STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ--S---  260 (368)
Q Consensus       193 ~~~~~~~v~~~~G~lywl~~~-------~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~--~---  260 (368)
                        ....++.+ +|.+|.+++.       ..+..||+.+.+|+...++|.....    ...+..+|+|++++...  .   
T Consensus       381 --~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~----~~~~~~~~~iyv~GG~~~~~~~~  453 (534)
T PHA03098        381 --YNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG----GCAIYHDGKIYVIGGISYIDNIK  453 (534)
T ss_pred             --ccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC----ceEEEECCEEEEECCccCCCCCc
Confidence              22345778 9999999871       4689999999999933345544322    24567799999998721  1   


Q ss_pred             -eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEE
Q 043460          261 -TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYR  332 (368)
Q Consensus       261 -~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~  332 (368)
                       .-.+|..+-.++               +|+.+..++.+...        .. ....  ++.||+.+       ...+.+
T Consensus       454 ~~~~v~~yd~~~~---------------~W~~~~~~~~~r~~--------~~-~~~~--~~~iyv~GG~~~~~~~~~v~~  507 (534)
T PHA03098        454 VYNIVESYNPVTN---------------KWTELSSLNFPRIN--------AS-LCIF--NNKIYVVGGDKYEYYINEIEV  507 (534)
T ss_pred             ccceEEEecCCCC---------------ceeeCCCCCccccc--------ce-EEEE--CCEEEEEcCCcCCcccceeEE
Confidence             123677776656               89988765532211        11 1122  34455542       347999


Q ss_pred             EECCCCeEEEecc
Q 043460          333 YHLKTNKMELFST  345 (368)
Q Consensus       333 ydl~t~~~~~v~~  345 (368)
                      ||+++++|+.+..
T Consensus       508 yd~~~~~W~~~~~  520 (534)
T PHA03098        508 YDDKTNTWTLFCK  520 (534)
T ss_pred             EeCCCCEEEecCC
Confidence            9999999998876

>PHA02790 Kelch-like protein; Provisional

Probab=99.05  E-value=2.8e-08  Score=97.63  Aligned_cols=179  Identities=12%  Similarity=0.077  Sum_probs=115.5

Q ss_pred             eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeee
Q 043460          116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFY  195 (368)
Q Consensus       116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~  195 (368)
                      ..+..+||.+++|..+|+++.....  .+.+.     -+-+|+.++.......++.|+..+++|...+.+..+   .  .
T Consensus       287 ~~v~~Ydp~~~~W~~~~~m~~~r~~--~~~v~-----~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~---r--~  354 (480)
T PHA02790        287 NNAIAVNYISNNWIPIPPMNSPRLY--ASGVP-----ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP---R--C  354 (480)
T ss_pred             CeEEEEECCCCEEEECCCCCchhhc--ceEEE-----ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC---C--c
Confidence            4577899999999999988743321  22221     123566666543345689999999999988754221   1  2


Q ss_pred             ccceEEEeCCeEEEEEe----CCeEEEEEcCCCeEEEEE-eCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccC
Q 043460          196 VLQSVYSRGGILYNLTY----RSTILRYNIEALSEAEII-EVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDH  270 (368)
Q Consensus       196 ~~~~v~~~~G~lywl~~----~~~il~fD~~~~~~~~~~-~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~  270 (368)
                      ...++.+ +|.||.+++    ...+..||+.+++|+ .+ ++|....    ...++..+|+|++++..   .+++-.  .
T Consensus       355 ~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~-~~~~m~~~r~----~~~~~~~~~~IYv~GG~---~e~ydp--~  423 (480)
T PHA02790        355 NPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQ-FGPSTYYPHY----KSCALVFGRRLFLVGRN---AEFYCE--S  423 (480)
T ss_pred             ccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEE-eCCCCCCccc----cceEEEECCEEEEECCc---eEEecC--C
Confidence            3346788 999999987    245789999999999 54 3443322    23566789999999752   233222  2


Q ss_pred             CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeC-------CeEEEEECCCCeEEEe
Q 043460          271 RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSC-------DMIYRYHLKTNKMELF  343 (368)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~ydl~t~~~~~v  343 (368)
                      .+               +|+.+..++.+...        .. .++.  ++.||+.++       ..+.+||+++++|+..
T Consensus       424 ~~---------------~W~~~~~m~~~r~~--------~~-~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        424 SN---------------TWTLIDDPIYPRDN--------PE-LIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             CC---------------cEeEcCCCCCCccc--------cE-EEEE--CCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence            34               89988776532211        11 1222  345666522       4689999999999754

>PLN02153 epithiospecifier protein

Probab=99.01  E-value=7.6e-08  Score=90.58  Aligned_cols=199  Identities=12%  Similarity=0.021  Sum_probs=115.8

Q ss_pred             eeEEEEcccCccceecCCCCcCCC--CCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCC
Q 043460          116 HRYYVCNPLTKQCVAIPKAREDVL--ASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRR  190 (368)
Q Consensus       116 ~~~~v~NP~T~~~~~lP~~~~~~~--~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~  190 (368)
                      ..++++||.+++|..+|+......  ...+..+.-     +-+|+.++...   ....+++|+.++++|+..+.+.....
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~-----~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~  124 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV-----GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGG  124 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE-----CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCC
Confidence            468999999999999886532111  111222211     22455554432   23478999999999998764311111


Q ss_pred             ceeeeccceEEEeCCeEEEEEeC------------CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC
Q 043460          191 PVSFYVLQSVYSRGGILYNLTYR------------STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN  258 (368)
Q Consensus       191 p~~~~~~~~v~~~~G~lywl~~~------------~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~  258 (368)
                      |.......++.. ++.||.+++.            ..+.+||+.+.+|. .++.+...........++..+|+|+++...
T Consensus       125 p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~-~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~  202 (341)
T PLN02153        125 PEARTFHSMASD-ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV-QLPDPGENFEKRGGAGFAVVQGKIWVVYGF  202 (341)
T ss_pred             CCCceeeEEEEE-CCEEEEECCccCCCccCCCcccceEEEEECCCCeEe-eCCCCCCCCCCCCcceEEEECCeEEEEecc
Confidence            222123346777 9999999871            25889999999999 554322111111123456789999998652


Q ss_pred             C----------C-eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee-eccccccCccccceEEEEEecCCCEEEEee
Q 043460          259 Q----------S-TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC-MDEWGNKLHVFGLTRFYNIHPNSDIIFLGS  326 (368)
Q Consensus       259 ~----------~-~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  326 (368)
                      .          . .-.+++++-...               +|+++.... .+. ...      ..  ++..-++.||+..
T Consensus       203 ~~~~~~gG~~~~~~~~v~~yd~~~~---------------~W~~~~~~g~~P~-~r~------~~--~~~~~~~~iyv~G  258 (341)
T PLN02153        203 ATSILPGGKSDYESNAVQFFDPASG---------------KWTEVETTGAKPS-ARS------VF--AHAVVGKYIIIFG  258 (341)
T ss_pred             ccccccCCccceecCceEEEEcCCC---------------cEEeccccCCCCC-Ccc------ee--eeEEECCEEEEEC
Confidence            1          0 124666665555               899986542 111 110      01  1111234455542


Q ss_pred             C----------------CeEEEEECCCCeEEEecc
Q 043460          327 C----------------DMIYRYHLKTNKMELFST  345 (368)
Q Consensus       327 ~----------------~~~~~ydl~t~~~~~v~~  345 (368)
                      +                ..+++||+++++|+++..
T Consensus       259 G~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~  293 (341)
T PLN02153        259 GEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE  293 (341)
T ss_pred             cccCCccccccccccccccEEEEEcCccEEEeccC
Confidence            1                268999999999999864

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.85  E-value=1.2e-06  Score=82.58  Aligned_cols=209  Identities=12%  Similarity=0.072  Sum_probs=120.8

Q ss_pred             CcEEEEeecCCCeeEEEEcc--cCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---------CCcEEEEE
Q 043460          104 NGLILLGSSLSKHRYYVCNP--LTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---------MDPEVDIF  172 (368)
Q Consensus       104 ~Glll~~~~~~~~~~~v~NP--~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---------~~~~~~vy  172 (368)
                      ++-|.+........++++|+  .+++|..+|+++.... ..++++.-     +-+|+.++...         ....+++|
T Consensus        17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R-~~~~~~~~-----~~~iYv~GG~~~~~~~~~~~~~~~v~~Y   90 (346)
T TIGR03547        17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPR-NQAVAAAI-----DGKLYVFGGIGKANSEGSPQVFDDVYRY   90 (346)
T ss_pred             CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCc-ccceEEEE-----CCEEEEEeCCCCCCCCCcceecccEEEE
Confidence            44444433223356778874  7889999998763111 11222211     12555555432         12468999


Q ss_pred             eCCCCCceeccccCCCCCceeeeccceE-EEeCCeEEEEEeC--------------------------------------
Q 043460          173 SSENKTWITRKVSVKPRRPVSFYVLQSV-YSRGGILYNLTYR--------------------------------------  213 (368)
Q Consensus       173 ss~~~~W~~~~~~~~~~~p~~~~~~~~v-~~~~G~lywl~~~--------------------------------------  213 (368)
                      +..+++|+..+...+    .......++ .+ +|.||.+++.                                      
T Consensus        91 d~~~~~W~~~~~~~p----~~~~~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (346)
T TIGR03547        91 DPKKNSWQKLDTRSP----VGLLGASGFSLH-NGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF  165 (346)
T ss_pred             ECCCCEEecCCCCCC----CcccceeEEEEe-CCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence            999999999863211    221222234 67 9999999762                                      


Q ss_pred             --CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC----CeEEEEEEc--cCCCCCCCCCCccCCCC
Q 043460          214 --STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ----STLLIWQLD--DHRHHSNSHGSNKAASG  285 (368)
Q Consensus       214 --~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~----~~~~IW~l~--~~~~~~~~~~~~~~~~~  285 (368)
                        ..+.+||+.+.+|+..-++|.....   ...++..+|+|+++....    ....+|..+  ..+.             
T Consensus       166 ~~~~v~~YDp~t~~W~~~~~~p~~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~-------------  229 (346)
T TIGR03547       166 WNKNVLSYDPSTNQWRNLGENPFLGTA---GSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKL-------------  229 (346)
T ss_pred             ccceEEEEECCCCceeECccCCCCcCC---CceEEEECCEEEEEeeeeCCCccchheEEEEecCCCc-------------
Confidence              4689999999999933345532111   335677899999998731    224455544  3344             


Q ss_pred             CCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeC------------------------CeEEEEECCCCeEE
Q 043460          286 ARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSC------------------------DMIYRYHLKTNKME  341 (368)
Q Consensus       286 ~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------------------------~~~~~ydl~t~~~~  341 (368)
                        +|+.+..|+.+......   ......++. -++.||+..+                        ..+.+||+++++|+
T Consensus       230 --~W~~~~~m~~~r~~~~~---~~~~~~a~~-~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~  303 (346)
T TIGR03547       230 --EWNKLPPLPPPKSSSQE---GLAGAFAGI-SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWS  303 (346)
T ss_pred             --eeeecCCCCCCCCCccc---cccEEeeeE-ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccc
Confidence              89998877632211000   000111111 1344555421                        14679999999999


Q ss_pred             Eecc
Q 043460          342 LFST  345 (368)
Q Consensus       342 ~v~~  345 (368)
                      .+..
T Consensus       304 ~~~~  307 (346)
T TIGR03547       304 KVGK  307 (346)
T ss_pred             ccCC
Confidence            8876

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=98.80  E-value=7.6e-07  Score=87.36  Aligned_cols=198  Identities=11%  Similarity=0.030  Sum_probs=118.1

Q ss_pred             eeEEEEcccCccceecCCCCc--CCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCC
Q 043460          116 HRYYVCNPLTKQCVAIPKARE--DVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRR  190 (368)
Q Consensus       116 ~~~~v~NP~T~~~~~lP~~~~--~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~  190 (368)
                      ..++++||.+++|..+|+...  ......+.++..     .-+++.+....   ....+++|++.+++|+....+..  .
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~-----~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~--~  265 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI-----GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEE--G  265 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE-----CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCC--C
Confidence            358899999999998875321  111111222211     11344444322   23578999999999998764311  1


Q ss_pred             ceeeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC--CeE
Q 043460          191 PVSFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ--STL  262 (368)
Q Consensus       191 p~~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~--~~~  262 (368)
                      |..-....++.+ ++.||.+.+      ...+.+||+.+.+|+ .++.|...........++..+|+++++....  ..-
T Consensus       266 P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~  343 (470)
T PLN02193        266 PTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVD  343 (470)
T ss_pred             CCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccC
Confidence            111122345678 999999986      245789999999999 6665432211111335667799999887632  124


Q ss_pred             EEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeC---------------
Q 043460          263 LIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSC---------------  327 (368)
Q Consensus       263 ~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------  327 (368)
                      .+|+++-.++               +|+++..+........      ..-.++.  ++.||+...               
T Consensus       344 dv~~yD~~t~---------------~W~~~~~~g~~P~~R~------~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~  400 (470)
T PLN02193        344 DVHYYDPVQD---------------KWTQVETFGVRPSERS------VFASAAV--GKHIVIFGGEIAMDPLAHVGPGQL  400 (470)
T ss_pred             ceEEEECCCC---------------EEEEeccCCCCCCCcc------eeEEEEE--CCEEEEECCccCCccccccCccce
Confidence            6777777666               8999876531111111      1111122  334555411               


Q ss_pred             -CeEEEEECCCCeEEEecc
Q 043460          328 -DMIYRYHLKTNKMELFST  345 (368)
Q Consensus       328 -~~~~~ydl~t~~~~~v~~  345 (368)
                       ..+++||++|++|+++..
T Consensus       401 ~ndv~~~D~~t~~W~~~~~  419 (470)
T PLN02193        401 TDGTFALDTETLQWERLDK  419 (470)
T ss_pred             eccEEEEEcCcCEEEEccc
Confidence             258999999999999875

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.78  E-value=6.3e-09  Score=67.68  Aligned_cols=39  Identities=18%  Similarity=0.492  Sum_probs=34.2

Q ss_pred             CCCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCch
Q 043460            4 IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI   42 (368)
Q Consensus         4 ~~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f   42 (368)
                      ..||+|++.+||+.||++++.+++.|||+|+.++.++.+
T Consensus         2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l   40 (47)
T PF12937_consen    2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL   40 (47)
T ss_dssp             CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence            479999999999999999999999999999999988743

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.76  E-value=3.1e-06  Score=79.06  Aligned_cols=148  Identities=11%  Similarity=0.057  Sum_probs=90.1

Q ss_pred             eEEEE-cccCc-cceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCc----eeccccCC
Q 043460          117 RYYVC-NPLTK-QCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTW----ITRKVSVK  187 (368)
Q Consensus       117 ~~~v~-NP~T~-~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W----~~~~~~~~  187 (368)
                      .++++ +|..+ +|..+++++...... .+..++      =+|+.+....   ....++.|+..++.|    +..+..  
T Consensus        40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~-~~~~~~------~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~l--  110 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQLPYEAAYG-ASVSVE------NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNL--  110 (323)
T ss_pred             eeEEEecCCCceeEEEcccCCccccce-EEEEEC------CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCC--
Confidence            46666 45433 788888766332111 111211      2355554332   235788899999998    333321  


Q ss_pred             CCCceeeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEe-CCCCCCCCCCceeEEeeCCeEEEEEECC-
Q 043460          188 PRRPVSFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIE-VPDKNNHPCDSEVIGLCKGALNYASRNQ-  259 (368)
Q Consensus       188 ~~~p~~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~-lP~~~~~~~~~~~l~~~~G~L~~~~~~~-  259 (368)
                         |.......++.+ +|.||.+.+      ...+.+||+.+.+|+ .++ +|.....   ...++..+++|+++...+ 
T Consensus       111 ---p~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~~r~---~~~~~~~~~~iYv~GG~~~  182 (323)
T TIGR03548       111 ---PFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQEWF-ELPDFPGEPRV---QPVCVKLQNELYVFGGGSN  182 (323)
T ss_pred             ---CcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCCee-ECCCCCCCCCC---cceEEEECCEEEEEcCCCC
Confidence               222223446778 999999986      247999999999999 553 6643222   335567899999998732 


Q ss_pred             -CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee
Q 043460          260 -STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC  296 (368)
Q Consensus       260 -~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~  296 (368)
                       ....++..+-.++               +|+.+..+.
T Consensus       183 ~~~~~~~~yd~~~~---------------~W~~~~~~~  205 (323)
T TIGR03548       183 IAYTDGYKYSPKKN---------------QWQKVADPT  205 (323)
T ss_pred             ccccceEEEecCCC---------------eeEECCCCC
Confidence             2235566665555               899877653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.71  E-value=1.5e-08  Score=63.77  Aligned_cols=38  Identities=34%  Similarity=0.644  Sum_probs=35.7

Q ss_pred             CCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCchh
Q 043460            6 LSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIP   43 (368)
Q Consensus         6 LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f~   43 (368)
                      ||+|++.+||.+|+++++.++++|||+|+.++.++.+-
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~   38 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW   38 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence            79999999999999999999999999999999987654

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.70  E-value=3.7e-06  Score=80.22  Aligned_cols=166  Identities=14%  Similarity=0.079  Sum_probs=100.3

Q ss_pred             cCCcEEEEeecCCCeeEEEEccc--CccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCC---------CcEEE
Q 043460          102 CCNGLILLGSSLSKHRYYVCNPL--TKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARM---------DPEVD  170 (368)
Q Consensus       102 s~~Glll~~~~~~~~~~~v~NP~--T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~---------~~~~~  170 (368)
                      ..++-|.+........++++++.  +++|..+|+++.... ..++.+.-     +-+|+.++....         ...++
T Consensus        36 ~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r-~~~~~v~~-----~~~IYV~GG~~~~~~~~~~~~~~~v~  109 (376)
T PRK14131         36 IDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPR-EQAVAAFI-----DGKLYVFGGIGKTNSEGSPQVFDDVY  109 (376)
T ss_pred             EECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCc-ccceEEEE-----CCEEEEEcCCCCCCCCCceeEcccEE
Confidence            34555555433234457787765  588999987652111 11222211     123444443211         24689


Q ss_pred             EEeCCCCCceeccccCCCCCceeeeccceEE-EeCCeEEEEEeC------------------------------------
Q 043460          171 IFSSENKTWITRKVSVKPRRPVSFYVLQSVY-SRGGILYNLTYR------------------------------------  213 (368)
Q Consensus       171 vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~-~~~G~lywl~~~------------------------------------  213 (368)
                      +|+..+++|+..+...    |.......++. . +|.||.+++.                                    
T Consensus       110 ~YD~~~n~W~~~~~~~----p~~~~~~~~~~~~-~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~  184 (376)
T PRK14131        110 KYDPKTNSWQKLDTRS----PVGLAGHVAVSLH-NGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED  184 (376)
T ss_pred             EEeCCCCEEEeCCCCC----CCcccceEEEEee-CCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence            9999999999987321    22222233444 7 9999999862                                    


Q ss_pred             ----CeEEEEEcCCCeEEEEE-eCCCCCCCCCCceeEEeeCCeEEEEEEC----CCeEEEEEEcc--CCCCCCCCCCccC
Q 043460          214 ----STILRYNIEALSEAEII-EVPDKNNHPCDSEVIGLCKGALNYASRN----QSTLLIWQLDD--HRHHSNSHGSNKA  282 (368)
Q Consensus       214 ----~~il~fD~~~~~~~~~~-~lP~~~~~~~~~~~l~~~~G~L~~~~~~----~~~~~IW~l~~--~~~~~~~~~~~~~  282 (368)
                          ..+.+||+.+.+|+ .+ ++|.....   ...++..+++|+++...    .....+|..+-  .+.          
T Consensus       185 ~~~~~~v~~YD~~t~~W~-~~~~~p~~~~~---~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~----------  250 (376)
T PRK14131        185 YFFNKEVLSYDPSTNQWK-NAGESPFLGTA---GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNL----------  250 (376)
T ss_pred             cCcCceEEEEECCCCeee-ECCcCCCCCCC---cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCc----------
Confidence                35899999999999 54 45542211   23566779999999872    23456665543  344          


Q ss_pred             CCCCCceEEEEEeee
Q 043460          283 ASGARSWILKHSICM  297 (368)
Q Consensus       283 ~~~~~~W~~~~~i~~  297 (368)
                           +|+++..|+.
T Consensus       251 -----~W~~~~~~p~  260 (376)
T PRK14131        251 -----KWQKLPDLPP  260 (376)
T ss_pred             -----ceeecCCCCC
Confidence                 8999887763

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.60  E-value=2.8e-08  Score=64.94  Aligned_cols=42  Identities=29%  Similarity=0.490  Sum_probs=35.0

Q ss_pred             CCCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCchhhh
Q 043460            4 IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRI   45 (368)
Q Consensus         4 ~~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f~~~   45 (368)
                      ..||+|++.+||.+|+++++++++.|||+|+.+++++.+-..
T Consensus         4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~   45 (48)
T PF00646_consen    4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK   45 (48)
T ss_dssp             HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred             HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence            369999999999999999999999999999999998766443

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PHA03098 kelch-like protein; Provisional

Probab=98.57  E-value=3.4e-06  Score=84.35  Aligned_cols=185  Identities=10%  Similarity=0.025  Sum_probs=114.9

Q ss_pred             eEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC----CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460          117 RYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR----MDPEVDIFSSENKTWITRKVSVKPRRPV  192 (368)
Q Consensus       117 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~----~~~~~~vyss~~~~W~~~~~~~~~~~p~  192 (368)
                      .+.-+|+.+++|..++..+....   ++.+.     -+-+|+.++...    ....+..|+..+++|...+.+..+   .
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---R  333 (534)
T PHA03098        265 NYITNYSPLSEINTIIDIHYVYC---FGSVV-----LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP---R  333 (534)
T ss_pred             eeeecchhhhhcccccCcccccc---ceEEE-----ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc---c
Confidence            45567888999998876552111   11111     122344444322    123688999999999887643221   1


Q ss_pred             eeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC--CC--eE
Q 043460          193 SFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN--QS--TL  262 (368)
Q Consensus       193 ~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~--~~--~~  262 (368)
                        .....+.+ +|.+|.+++      ...+..||+.+.+|+..-++|....    ....+..+|+|++++..  ..  .-
T Consensus       334 --~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~----~~~~~~~~~~iYv~GG~~~~~~~~~  406 (534)
T PHA03098        334 --KNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY----NPCVVNVNNLIYVIGGISKNDELLK  406 (534)
T ss_pred             --ccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc----cceEEEECCEEEEECCcCCCCcccc
Confidence              23346788 999999987      2468899999999993334554432    23556789999999872  11  13


Q ss_pred             EEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee----------CCeEEE
Q 043460          263 LIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS----------CDMIYR  332 (368)
Q Consensus       263 ~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------~~~~~~  332 (368)
                      .++..+-.++               +|+....++.....        ..  ++. .++.||+.+          ...+.+
T Consensus       407 ~v~~yd~~t~---------------~W~~~~~~p~~r~~--------~~--~~~-~~~~iyv~GG~~~~~~~~~~~~v~~  460 (534)
T PHA03098        407 TVECFSLNTN---------------KWSKGSPLPISHYG--------GC--AIY-HDGKIYVIGGISYIDNIKVYNIVES  460 (534)
T ss_pred             eEEEEeCCCC---------------eeeecCCCCccccC--------ce--EEE-ECCEEEEECCccCCCCCcccceEEE
Confidence            4566665555               89987765532211        01  112 234566652          124999


Q ss_pred             EECCCCeEEEecc
Q 043460          333 YHLKTNKMELFST  345 (368)
Q Consensus       333 ydl~t~~~~~v~~  345 (368)
                      ||+++++|+++..
T Consensus       461 yd~~~~~W~~~~~  473 (534)
T PHA03098        461 YNPVTNKWTELSS  473 (534)
T ss_pred             ecCCCCceeeCCC
Confidence            9999999999875

>PLN02153 epithiospecifier protein

Probab=98.54  E-value=1.2e-05  Score=75.73  Aligned_cols=153  Identities=8%  Similarity=0.041  Sum_probs=94.8

Q ss_pred             eeEEEEcccCccceecCCCCcC---CCCCCCeeEEcCCCCCCeEEEEEEEeC---------CCcEEEEEeCCCCCceecc
Q 043460          116 HRYYVCNPLTKQCVAIPKARED---VLASPPALAFHPCDSSHYKIIRFLRAR---------MDPEVDIFSSENKTWITRK  183 (368)
Q Consensus       116 ~~~~v~NP~T~~~~~lP~~~~~---~~~~~~~l~~d~~~~~~ykvv~~~~~~---------~~~~~~vyss~~~~W~~~~  183 (368)
                      ..++++||.|++|..+|+++..   .....++....     +=|++.++...         ....+++|+.++++|+..+
T Consensus       101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~  175 (341)
T PLN02153        101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD-----ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP  175 (341)
T ss_pred             CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE-----CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC
Confidence            4688999999999999865210   00111122211     11344444322         1236899999999999876


Q ss_pred             ccCCCCCceeeeccceEEEeCCeEEEEEe--------------CCeEEEEEcCCCeEEEEEe----CCCCCCCCCCceeE
Q 043460          184 VSVKPRRPVSFYVLQSVYSRGGILYNLTY--------------RSTILRYNIEALSEAEIIE----VPDKNNHPCDSEVI  245 (368)
Q Consensus       184 ~~~~~~~p~~~~~~~~v~~~~G~lywl~~--------------~~~il~fD~~~~~~~~~~~----lP~~~~~~~~~~~l  245 (368)
                      .....  |..-.....+.+ +|.+|.+.+              ...+.+||+.+.+|+ .++    +|....    ....
T Consensus       176 ~~~~~--~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~-~~~~~g~~P~~r~----~~~~  247 (341)
T PLN02153        176 DPGEN--FEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT-EVETTGAKPSARS----VFAH  247 (341)
T ss_pred             CCCCC--CCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCCCcEE-eccccCCCCCCcc----eeee
Confidence            43110  111112235678 999999864              146899999999999 654    343322    2345


Q ss_pred             EeeCCeEEEEEECC----------Ce--EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee
Q 043460          246 GLCKGALNYASRNQ----------ST--LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC  296 (368)
Q Consensus       246 ~~~~G~L~~~~~~~----------~~--~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~  296 (368)
                      +..+++|++++...          ..  -.+|.++-.++               .|+.+....
T Consensus       248 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~---------------~W~~~~~~~  295 (341)
T PLN02153        248 AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL---------------VWEKLGECG  295 (341)
T ss_pred             EEECCEEEEECcccCCccccccccccccccEEEEEcCcc---------------EEEeccCCC
Confidence            67789999998731          11  27899998777               899876543

>PHA02790 Kelch-like protein; Provisional

Probab=98.53  E-value=4.2e-06  Score=82.35  Aligned_cols=139  Identities=10%  Similarity=0.009  Sum_probs=91.9

Q ss_pred             EecCCcEEEEeec-CCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC-CCcEEEEEeCCCC
Q 043460          100 IDCCNGLILLGSS-LSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR-MDPEVDIFSSENK  177 (368)
Q Consensus       100 ~~s~~Glll~~~~-~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~-~~~~~~vyss~~~  177 (368)
                      .++.+|.|.+.++ .....+..+||.+++|..+|+++..... ..+..+      +-+|+.++... ....+++|+++++
T Consensus       314 ~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~------~g~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        314 GVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVASI------NNVIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             EEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEEE------CCEEEEecCcCCCCccEEEEeCCCC
Confidence            3446676665543 1234577899999999999998743321 111121      23555554432 2356899999999


Q ss_pred             CceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEE
Q 043460          178 TWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASR  257 (368)
Q Consensus       178 ~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~  257 (368)
                      .|+..+.+..+   .  ....++.+ +|.||.++  +...+||+.+++|+..-++|....    ...++..+|+|++++.
T Consensus       387 ~W~~~~~m~~~---r--~~~~~~~~-~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~~r~----~~~~~v~~~~IYviGG  454 (480)
T PHA02790        387 QWQFGPSTYYP---H--YKSCALVF-GRRLFLVG--RNAEFYCESSNTWTLIDDPIYPRD----NPELIIVDNKLLLIGG  454 (480)
T ss_pred             EEEeCCCCCCc---c--ccceEEEE-CCEEEEEC--CceEEecCCCCcEeEcCCCCCCcc----ccEEEEECCEEEEECC
Confidence            99998754321   1  22346778 99999997  357889999999993334544322    3467888999999987

>PLN02193 nitrile-specifier protein

Probab=98.50  E-value=3.8e-05  Score=75.48  Aligned_cols=154  Identities=11%  Similarity=0.057  Sum_probs=97.4

Q ss_pred             CeeEEEEcccCccceecCCCCcC-CCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCC
Q 043460          115 KHRYYVCNPLTKQCVAIPKARED-VLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRR  190 (368)
Q Consensus       115 ~~~~~v~NP~T~~~~~lP~~~~~-~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~  190 (368)
                      ...++++||.|++|..++++... .....+.....     .-+++.+....   ....+++|+..+++|+..+..  ...
T Consensus       243 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-----~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~--~~~  315 (470)
T PLN02193        243 YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-----EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTP--GDS  315 (470)
T ss_pred             CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-----CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCC--CCC
Confidence            35789999999999999775210 00111222211     22455554432   235689999999999987632  111


Q ss_pred             ceeeeccceEEEeCCeEEEEEe-----CCeEEEEEcCCCeEEEEEeC----CCCCCCCCCceeEEeeCCeEEEEEECC--
Q 043460          191 PVSFYVLQSVYSRGGILYNLTY-----RSTILRYNIEALSEAEIIEV----PDKNNHPCDSEVIGLCKGALNYASRNQ--  259 (368)
Q Consensus       191 p~~~~~~~~v~~~~G~lywl~~-----~~~il~fD~~~~~~~~~~~l----P~~~~~~~~~~~l~~~~G~L~~~~~~~--  259 (368)
                      |..-.....+.+ +|.+|.+.+     ...+.+||+.+.+|+ .++.    |....    ....+..+++|+++....  
T Consensus       316 ~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~~W~-~~~~~g~~P~~R~----~~~~~~~~~~iyv~GG~~~~  389 (470)
T PLN02193        316 FSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQDKWT-QVETFGVRPSERS----VFASAAVGKHIVIFGGEIAM  389 (470)
T ss_pred             CCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCCEEE-EeccCCCCCCCcc----eeEEEEECCEEEEECCccCC
Confidence            111112335778 999999876     257999999999999 5532    32221    234567789999988731  


Q ss_pred             --------CeE--EEEEEccCCCCCCCCCCccCCCCCCceEEEEEee
Q 043460          260 --------STL--LIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC  296 (368)
Q Consensus       260 --------~~~--~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~  296 (368)
                              ..+  .+|.++-.+.               +|+.+..+.
T Consensus       390 ~~~~~~~~~~~~ndv~~~D~~t~---------------~W~~~~~~~  421 (470)
T PLN02193        390 DPLAHVGPGQLTDGTFALDTETL---------------QWERLDKFG  421 (470)
T ss_pred             ccccccCccceeccEEEEEcCcC---------------EEEEcccCC
Confidence                    112  5899998777               899887654

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.39  E-value=6.9e-05  Score=71.53  Aligned_cols=86  Identities=15%  Similarity=0.135  Sum_probs=55.4

Q ss_pred             cEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeC---------CeEEEEEcCCCeEEEEEeCCCCCC
Q 043460          167 PEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYR---------STILRYNIEALSEAEIIEVPDKNN  237 (368)
Q Consensus       167 ~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~---------~~il~fD~~~~~~~~~~~lP~~~~  237 (368)
                      ..+++|+..++.|+..+..+..    .......+.+ ++.||.+++.         .....||+.+.+|..+.++|....
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~----~~~~~a~v~~-~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~  263 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFL----GTAGSAVVIK-GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPG  263 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCC----CCCcceEEEE-CCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCc
Confidence            4699999999999987743211    1112235677 9999999861         234567888999983445665332


Q ss_pred             CC-C---CceeEEeeCCeEEEEEE
Q 043460          238 HP-C---DSEVIGLCKGALNYASR  257 (368)
Q Consensus       238 ~~-~---~~~~l~~~~G~L~~~~~  257 (368)
                      .. .   .....+..+|+|++++.
T Consensus       264 ~~~~~~~~~~~a~~~~~~iyv~GG  287 (376)
T PRK14131        264 GSSQEGVAGAFAGYSNGVLLVAGG  287 (376)
T ss_pred             CCcCCccceEeceeECCEEEEeec
Confidence            11 0   01224567999999886

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.33  E-value=4.3e-05  Score=71.34  Aligned_cols=147  Identities=14%  Similarity=0.168  Sum_probs=90.2

Q ss_pred             ecCCcEEEEeec----CCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC--CCcEEEEEeC
Q 043460          101 DCCNGLILLGSS----LSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR--MDPEVDIFSS  174 (368)
Q Consensus       101 ~s~~Glll~~~~----~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~--~~~~~~vyss  174 (368)
                      +..+|.|.+...    .....++++||.|++|..+|+++...........++      =+|+.+....  ....+++|+.
T Consensus       120 ~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~------~~iYv~GG~~~~~~~~~~~yd~  193 (323)
T TIGR03548       120 CYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQ------NELYVFGGGSNIAYTDGYKYSP  193 (323)
T ss_pred             EEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEEC------CEEEEEcCCCCccccceEEEec
Confidence            344666655443    123578999999999999987653211111111111      2455554432  1235789999


Q ss_pred             CCCCceeccccCCCCCceeeeccce-EEEeCCeEEEEEeC--------------------------------------Ce
Q 043460          175 ENKTWITRKVSVKPRRPVSFYVLQS-VYSRGGILYNLTYR--------------------------------------ST  215 (368)
Q Consensus       175 ~~~~W~~~~~~~~~~~p~~~~~~~~-v~~~~G~lywl~~~--------------------------------------~~  215 (368)
                      ++++|+....+.....|.......+ +.. +|.||.+++.                                      ..
T Consensus       194 ~~~~W~~~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (323)
T TIGR03548       194 KKNQWQKVADPTTDSEPISLLGAASIKIN-ESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRK  272 (323)
T ss_pred             CCCeeEECCCCCCCCCceeccceeEEEEC-CCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCce
Confidence            9999999875422122333222333 445 7899998762                                      35


Q ss_pred             EEEEEcCCCeEEEEEe-CCCCCCCCCCceeEEeeCCeEEEEEEC
Q 043460          216 ILRYNIEALSEAEIIE-VPDKNNHPCDSEVIGLCKGALNYASRN  258 (368)
Q Consensus       216 il~fD~~~~~~~~~~~-lP~~~~~~~~~~~l~~~~G~L~~~~~~  258 (368)
                      +++||+.+++|+ .+. +|.....   ...++..+++|+++...
T Consensus       273 v~~yd~~~~~W~-~~~~~p~~~r~---~~~~~~~~~~iyv~GG~  312 (323)
T TIGR03548       273 ILIYNVRTGKWK-SIGNSPFFARC---GAALLLTGNNIFSINGE  312 (323)
T ss_pred             EEEEECCCCeee-EcccccccccC---chheEEECCEEEEEecc
Confidence            999999999999 554 5422111   33577889999999873

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.24  E-value=0.00029  Score=66.44  Aligned_cols=86  Identities=14%  Similarity=0.115  Sum_probs=54.0

Q ss_pred             cEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeC-------CeEEEEE--cCCCeEEEEEeCCCCCC
Q 043460          167 PEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYR-------STILRYN--IEALSEAEIIEVPDKNN  237 (368)
Q Consensus       167 ~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~-------~~il~fD--~~~~~~~~~~~lP~~~~  237 (368)
                      ..+++|++.+++|+..+.++..    .......+.+ +|+||.+.+.       ..+..||  +.+.+|+...++|....
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~----~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~  242 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFL----GTAGSAIVHK-GNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKS  242 (346)
T ss_pred             ceEEEEECCCCceeECccCCCC----cCCCceEEEE-CCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCC
Confidence            5799999999999998754211    1112335677 9999999861       2244454  56679983445554321


Q ss_pred             C---CCCceeEEeeCCeEEEEEE
Q 043460          238 H---PCDSEVIGLCKGALNYASR  257 (368)
Q Consensus       238 ~---~~~~~~l~~~~G~L~~~~~  257 (368)
                      .   .......+..+|+|++++.
T Consensus       243 ~~~~~~~~~~a~~~~~~Iyv~GG  265 (346)
T TIGR03547       243 SSQEGLAGAFAGISNGVLLVAGG  265 (346)
T ss_pred             CccccccEEeeeEECCEEEEeec
Confidence            1   0002235678999999987

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=97.80  E-value=0.00059  Score=59.73  Aligned_cols=202  Identities=13%  Similarity=0.123  Sum_probs=115.8

Q ss_pred             CCeeEEEEcccCccceecCCCCcC----CCCCC-CeeEEcCCCCCCe--EEEEEEEeC----CCcEEEEEeCCCCCceec
Q 043460          114 SKHRYYVCNPLTKQCVAIPKARED----VLASP-PALAFHPCDSSHY--KIIRFLRAR----MDPEVDIFSSENKTWITR  182 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~~~lP~~~~~----~~~~~-~~l~~d~~~~~~y--kvv~~~~~~----~~~~~~vyss~~~~W~~~  182 (368)
                      ++-.+.+.|-.+-+|.++|+--..    ..+.. ...-|.+. .-.|  |++..+.++    .+..+.-|+.+++.|+..
T Consensus        42 ~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHt-vV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p  120 (392)
T KOG4693|consen   42 DPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHT-VVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKP  120 (392)
T ss_pred             CcceeEEeeccceeEEecCcccccccccCCCCccchhhcCce-EEEEcceEEEEcCccCcccccceeeeecccccccccc
Confidence            556788999999999999983211    11111 11111110 0111  233333332    355677799999999876


Q ss_pred             cccCCCCCceeeeccceEEEeCCeEEEEEe--------CCeEEEEEcCCCeEEEEEe---CCCCCCCCCCceeEEeeCCe
Q 043460          183 KVSVKPRRPVSFYVLQSVYSRGGILYNLTY--------RSTILRYNIEALSEAEIIE---VPDKNNHPCDSEVIGLCKGA  251 (368)
Q Consensus       183 ~~~~~~~~p~~~~~~~~v~~~~G~lywl~~--------~~~il~fD~~~~~~~~~~~---lP~~~~~~~~~~~l~~~~G~  251 (368)
                      ...  ...|-.-..+.++++ +..+|-.++        ...+-++|+.|.+|+ .+.   .|+.-.+   .-.....+|.
T Consensus       121 ~v~--G~vPgaRDGHsAcV~-gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr-~~~Tkg~PprwRD---FH~a~~~~~~  193 (392)
T KOG4693|consen  121 EVE--GFVPGARDGHSACVW-GNQMYIFGGYEEDAQRFSQDTHVLDFATMTWR-EMHTKGDPPRWRD---FHTASVIDGM  193 (392)
T ss_pred             cee--eecCCccCCceeeEE-CcEEEEecChHHHHHhhhccceeEeccceeee-ehhccCCCchhhh---hhhhhhccce
Confidence            532  111122223446777 888998887        478999999999999 664   3433222   2233455788


Q ss_pred             EEEEEE--CC----------CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCC
Q 043460          252 LNYASR--NQ----------STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNS  319 (368)
Q Consensus       252 L~~~~~--~~----------~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  319 (368)
                      +++.+.  ++          -.-+|-.|+-..+               .|..-.+-.+-.-+...      . -.+.-++
T Consensus       194 MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~---------------aW~r~p~~~~~P~GRRS------H-S~fvYng  251 (392)
T KOG4693|consen  194 MYIFGGRSDESGPFHSIHEQYCDTIMALDLATG---------------AWTRTPENTMKPGGRRS------H-STFVYNG  251 (392)
T ss_pred             EEEeccccccCCCccchhhhhcceeEEEecccc---------------ccccCCCCCcCCCcccc------c-ceEEEcc
Confidence            888876  21          1235666666555               78876433322112111      0 1122233


Q ss_pred             CEEEEe--------eCCeEEEEECCCCeEEEecc
Q 043460          320 DIIFLG--------SCDMIYRYHLKTNKMELFST  345 (368)
Q Consensus       320 ~~v~~~--------~~~~~~~ydl~t~~~~~v~~  345 (368)
                      .+-++.        .-..++.||++|..|..+.-
T Consensus       252 ~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~  285 (392)
T KOG4693|consen  252 KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV  285 (392)
T ss_pred             eEEEecccchhhhhhhcceeecccccchheeeec
Confidence            333332        34579999999999999875

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=97.65  E-value=0.0033  Score=58.48  Aligned_cols=203  Identities=11%  Similarity=0.098  Sum_probs=119.6

Q ss_pred             eEEEEcccCccceec--CCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC--------CCcEEEEEeCCCCCceeccccC
Q 043460          117 RYYVCNPLTKQCVAI--PKAREDVLASPPALAFHPCDSSHYKIIRFLRAR--------MDPEVDIFSSENKTWITRKVSV  186 (368)
Q Consensus       117 ~~~v~NP~T~~~~~l--P~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~--------~~~~~~vyss~~~~W~~~~~~~  186 (368)
                      .+|++|--+.+|+.+  |.+|...  +.+..+..|+  + +-.+.-+...        ....+.+|++.+..|+.+...-
T Consensus        99 dLy~Yn~k~~eWkk~~spn~P~pR--sshq~va~~s--~-~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g  173 (521)
T KOG1230|consen   99 DLYSYNTKKNEWKKVVSPNAPPPR--SSHQAVAVPS--N-ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG  173 (521)
T ss_pred             eeeEEeccccceeEeccCCCcCCC--ccceeEEecc--C-eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC
Confidence            688999999999997  4333222  2233333331  2 1111111111        3456889999999999987421


Q ss_pred             CCCCceeeeccceEEEeCCeEEEEEe----------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeEEEE
Q 043460          187 KPRRPVSFYVLQSVYSRGGILYNLTY----------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGALNYA  255 (368)
Q Consensus       187 ~~~~p~~~~~~~~v~~~~G~lywl~~----------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~  255 (368)
                         .|..-..++.|.. ...|.-.++          -+.+.+||+++=+|+ .+..+...........+.+. +|.+++-
T Consensus       174 ---~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~-Klepsga~PtpRSGcq~~vtpqg~i~vy  248 (521)
T KOG1230|consen  174 ---GPSPRSGHRMVAW-KRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWS-KLEPSGAGPTPRSGCQFSVTPQGGIVVY  248 (521)
T ss_pred             ---CCCCCccceeEEe-eeeEEEEcceecCCCceEEeeeeEEEeccceeee-eccCCCCCCCCCCcceEEecCCCcEEEE
Confidence               1222222334555 444444443          357999999999999 77665432222224455565 8888887


Q ss_pred             EEC------------CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEE
Q 043460          256 SRN------------QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIF  323 (368)
Q Consensus       256 ~~~------------~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~  323 (368)
                      +..            ..+-.+|.|+-..+.         .. -..|+++..+.+..-+..     ++. +++++++..++
T Consensus       249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~---------~d-Kw~W~kvkp~g~kPspRs-----gfs-v~va~n~kal~  312 (521)
T KOG1230|consen  249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGR---------ED-KWVWTKVKPSGVKPSPRS-----GFS-VAVAKNHKALF  312 (521)
T ss_pred             cchhHhhhhhhhhcCceeeeeeeecCCcCC---------Cc-ceeEeeccCCCCCCCCCC-----cee-EEEecCCceEE
Confidence            651            123478999876320         11 237888887775433321     222 45677766666


Q ss_pred             Ee---e------------CCeEEEEECCCCeEEEecc
Q 043460          324 LG---S------------CDMIYRYHLKTNKMELFST  345 (368)
Q Consensus       324 ~~---~------------~~~~~~ydl~t~~~~~v~~  345 (368)
                      +.   +            ...+|.||+..++|...+.
T Consensus       313 FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql  349 (521)
T KOG1230|consen  313 FGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL  349 (521)
T ss_pred             ecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence            64   1            3479999999999986544

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=97.07  E-value=0.0047  Score=54.27  Aligned_cols=151  Identities=14%  Similarity=0.170  Sum_probs=92.5

Q ss_pred             eeEEEEcccCccceec------CCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccC
Q 043460          116 HRYYVCNPLTKQCVAI------PKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSV  186 (368)
Q Consensus       116 ~~~~v~NP~T~~~~~l------P~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~  186 (368)
                      ..++-++|-|.+|++.      |+.....  .+..++      +..-|+.-....   -...+++++..|..|+...+. 
T Consensus       105 N~Ly~fDp~t~~W~~p~v~G~vPgaRDGH--sAcV~g------n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tk-  175 (392)
T KOG4693|consen  105 NLLYEFDPETNVWKKPEVEGFVPGARDGH--SACVWG------NQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTK-  175 (392)
T ss_pred             ceeeeeccccccccccceeeecCCccCCc--eeeEEC------cEEEEecChHHHHHhhhccceeEeccceeeeehhcc-
Confidence            4578899999999862      3332111  111111      111122111111   245678888899999998642 


Q ss_pred             CCCCceeee-ccceEEEeCCeEEEEEe---------------CCeEEEEEcCCCeEEEEEeCCCCC--CCCCCceeEEee
Q 043460          187 KPRRPVSFY-VLQSVYSRGGILYNLTY---------------RSTILRYNIEALSEAEIIEVPDKN--NHPCDSEVIGLC  248 (368)
Q Consensus       187 ~~~~p~~~~-~~~~v~~~~G~lywl~~---------------~~~il~fD~~~~~~~~~~~lP~~~--~~~~~~~~l~~~  248 (368)
                        +.|-.|. .+.++.+ +|.+|-.++               -..|+++|+.|+.|. ..  |...  .....+-...+.
T Consensus       176 --g~PprwRDFH~a~~~-~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~-r~--p~~~~~P~GRRSHS~fvY  249 (392)
T KOG4693|consen  176 --GDPPRWRDFHTASVI-DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWT-RT--PENTMKPGGRRSHSTFVY  249 (392)
T ss_pred             --CCCchhhhhhhhhhc-cceEEEeccccccCCCccchhhhhcceeEEEeccccccc-cC--CCCCcCCCcccccceEEE
Confidence              2233444 3557888 999999887               267999999999998 33  2211  111123356688


Q ss_pred             CCeEEEEEECCCe-----EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee
Q 043460          249 KGALNYASRNQST-----LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC  296 (368)
Q Consensus       249 ~G~L~~~~~~~~~-----~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~  296 (368)
                      +|.+++.+....+     -.+|..+-...               .|.++..-.
T Consensus       250 ng~~Y~FGGYng~ln~HfndLy~FdP~t~---------------~W~~I~~~G  287 (392)
T KOG4693|consen  250 NGKMYMFGGYNGTLNVHFNDLYCFDPKTS---------------MWSVISVRG  287 (392)
T ss_pred             cceEEEecccchhhhhhhcceeecccccc---------------hheeeeccC
Confidence            9999999873222     36788877655               798876544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.00058  Score=61.09  Aligned_cols=38  Identities=24%  Similarity=0.301  Sum_probs=35.4

Q ss_pred             CCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCch
Q 043460            5 YLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI   42 (368)
Q Consensus         5 ~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f   42 (368)
                      .||||++..||+-|+.|+|++...|||+|+++-++...
T Consensus       100 slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l  137 (419)
T KOG2120|consen  100 SLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL  137 (419)
T ss_pred             cCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence            69999999999999999999999999999999887653

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=96.68  E-value=0.12  Score=51.06  Aligned_cols=149  Identities=13%  Similarity=0.104  Sum_probs=97.1

Q ss_pred             EEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeCC-------eEEEEEcCCCeEEEEEeC----CCCC
Q 043460          168 EVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRS-------TILRYNIEALSEAEIIEV----PDKN  236 (368)
Q Consensus       168 ~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~-------~il~fD~~~~~~~~~~~l----P~~~  236 (368)
                      .+.+++..+..|......  ...|..-.....+.+ +..||.+++..       .+-.||+.+.+|. .+..    |+..
T Consensus        89 dl~~~d~~~~~w~~~~~~--g~~p~~r~g~~~~~~-~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~-~l~~~~~~P~~r  164 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAAT--GDEPSPRYGHSLSAV-GDKLYLFGGTDKKYRNLNELHSLDLSTRTWS-LLSPTGDPPPPR  164 (482)
T ss_pred             eeEEeecCCccccccccc--CCCCCcccceeEEEE-CCeEEEEccccCCCCChhheEeccCCCCcEE-EecCcCCCCCCc
Confidence            588888888888876532  222322223346788 99999999843       8999999999999 5542    3332


Q ss_pred             CCCCCceeEEeeCCeEEEEEEC----CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEE
Q 043460          237 NHPCDSEVIGLCKGALNYASRN----QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRF  312 (368)
Q Consensus       237 ~~~~~~~~l~~~~G~L~~~~~~----~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~  312 (368)
                      .    .-.++..+.+|++.+..    +..-.+|+++-...               .|.++.+.....-+...      +.
T Consensus       165 ~----~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~---------------~W~~~~~~g~~P~pR~g------H~  219 (482)
T KOG0379|consen  165 A----GHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETS---------------TWSELDTQGEAPSPRYG------HA  219 (482)
T ss_pred             c----cceEEEECCEEEEECCccCcccceeeeeeeccccc---------------cceecccCCCCCCCCCC------ce
Confidence            2    23566777888888872    13458899998766               89999887744333221      22


Q ss_pred             EEEecCCCEEEEe------eCCeEEEEECCCCeEEEecc
Q 043460          313 YNIHPNSDIIFLG------SCDMIYRYHLKTNKMELFST  345 (368)
Q Consensus       313 ~~~~~~~~~v~~~------~~~~~~~ydl~t~~~~~v~~  345 (368)
                      +.+..+.-+|+..      .-..+..+|+.+.+|.++..
T Consensus       220 ~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~  258 (482)
T KOG0379|consen  220 MVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPT  258 (482)
T ss_pred             EEEECCeEEEEeccccCCceecceEeeecccceeeeccc
Confidence            3334332233332      12469999999999997765

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=96.32  E-value=0.29  Score=48.28  Aligned_cols=198  Identities=12%  Similarity=0.092  Sum_probs=114.5

Q ss_pred             eEEEEcccCccceecCCCCcCCC-CCCCeeEEcCCCCCCeEEEEEEEeC----CCcEEEEEeCCCCCceeccccCCCCCc
Q 043460          117 RYYVCNPLTKQCVAIPKAREDVL-ASPPALAFHPCDSSHYKIIRFLRAR----MDPEVDIFSSENKTWITRKVSVKPRRP  191 (368)
Q Consensus       117 ~~~v~NP~T~~~~~lP~~~~~~~-~~~~~l~~d~~~~~~ykvv~~~~~~----~~~~~~vyss~~~~W~~~~~~~~~~~p  191 (368)
                      .++++|--+..|........... ...+.+.    .-+ =+++.++...    ....++.|+..++.|+.....-.  .|
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~----~~~-~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~--~P  161 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLS----AVG-DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGD--PP  161 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEE----EEC-CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCC--CC
Confidence            59999999988877543321110 0111111    001 2333333321    23489999999999998774321  12


Q ss_pred             eeeeccceEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC--Ce-
Q 043460          192 VSFYVLQSVYSRGGILYNLTY-------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ--ST-  261 (368)
Q Consensus       192 ~~~~~~~~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~--~~-  261 (368)
                      .....+.++.+ +..+|..++       -..+.+||+.+.+|. .+..............++..+++++++....  .. 
T Consensus       162 ~~r~~Hs~~~~-g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~-~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~  239 (482)
T KOG0379|consen  162 PPRAGHSATVV-GTKLVVFGGIGGTGDSLNDLHIYDLETSTWS-ELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVY  239 (482)
T ss_pred             CCcccceEEEE-CCEEEEECCccCcccceeeeeeeccccccce-ecccCCCCCCCCCCceEEEECCeEEEEeccccCCce
Confidence            22233445666 778888776       357999999999999 6654333222222446778888988888732  22 


Q ss_pred             -EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe---e-----CCeEEE
Q 043460          262 -LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG---S-----CDMIYR  332 (368)
Q Consensus       262 -~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~-----~~~~~~  332 (368)
                       =.+|.|+-.+.               +|.+.....  .++...    ......+. ...++++.   .     -..++.
T Consensus       240 l~D~~~ldl~~~---------------~W~~~~~~g--~~p~~R----~~h~~~~~-~~~~~l~gG~~~~~~~~l~~~~~  297 (482)
T KOG0379|consen  240 LNDVHILDLSTW---------------EWKLLPTGG--DLPSPR----SGHSLTVS-GDHLLLFGGGTDPKQEPLGDLYG  297 (482)
T ss_pred             ecceEeeecccc---------------eeeeccccC--CCCCCc----ceeeeEEE-CCEEEEEcCCccccccccccccc
Confidence             37899988655               788544333  122111    11222222 22333332   1     346899


Q ss_pred             EECCCCeEEEecc
Q 043460          333 YHLKTNKMELFST  345 (368)
Q Consensus       333 ydl~t~~~~~v~~  345 (368)
                      ||+++..|.++..
T Consensus       298 l~~~~~~w~~~~~  310 (482)
T KOG0379|consen  298 LDLETLVWSKVES  310 (482)
T ss_pred             ccccccceeeeec
Confidence            9999999998876

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.16  E-value=0.0045  Score=56.17  Aligned_cols=38  Identities=26%  Similarity=0.468  Sum_probs=35.9

Q ss_pred             CCC----HHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCch
Q 043460            5 YLS----EDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI   42 (368)
Q Consensus         5 ~LP----~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f   42 (368)
                      .||    +++.+.||+.|...+|..|..|||+|+++++++..
T Consensus        77 ~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~  118 (499)
T KOG0281|consen   77 ALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGML  118 (499)
T ss_pred             hcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchH
Confidence            588    99999999999999999999999999999999864

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=96.06  E-value=0.13  Score=48.20  Aligned_cols=127  Identities=16%  Similarity=0.204  Sum_probs=76.2

Q ss_pred             eEEEeCCeEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC-----CCe----EEEEE
Q 043460          199 SVYSRGGILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN-----QST----LLIWQ  266 (368)
Q Consensus       199 ~v~~~~G~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~-----~~~----~~IW~  266 (368)
                      -+.. +|-+|--..   .+.+.+||..+.+|. .+..|......+....++...|.|.+.+..     +..    -.+|.
T Consensus        81 Lilf-GGEf~ngqkT~vYndLy~Yn~k~~eWk-k~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~  158 (521)
T KOG1230|consen   81 LILF-GGEFYNGQKTHVYNDLYSYNTKKNEWK-KVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWL  158 (521)
T ss_pred             eEEe-cceeecceeEEEeeeeeEEecccccee-EeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheee
Confidence            3444 555554111   567999999999999 777665443322234555566788888762     222    36899


Q ss_pred             EccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCcc---ccceEEE-EEec-CCCEEEEeeCCeEEEEECCCCeEE
Q 043460          267 LDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHV---FGLTRFY-NIHP-NSDIIFLGSCDMIYRYHLKTNKME  341 (368)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~---~~~~~~~-~~~~-~~~~v~~~~~~~~~~ydl~t~~~~  341 (368)
                      ++-...               .|+++..-.-+.-.+.+..   ...+.++ ||+. +++.+|+   ..+++||++|-+|+
T Consensus       159 fd~~tr---------------kweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~Yy---NDvy~FdLdtykW~  220 (521)
T KOG1230|consen  159 FDLKTR---------------KWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYY---NDVYAFDLDTYKWS  220 (521)
T ss_pred             eeeccc---------------hheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEe---eeeEEEeccceeee
Confidence            988766               8998764432111111100   0112222 3443 4455555   57999999999999


Q ss_pred             Eecc
Q 043460          342 LFST  345 (368)
Q Consensus       342 ~v~~  345 (368)
                      ++..
T Consensus       221 Klep  224 (521)
T KOG1230|consen  221 KLEP  224 (521)
T ss_pred             eccC
Confidence            9987

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.59  E-value=0.0067  Score=54.64  Aligned_cols=42  Identities=12%  Similarity=0.260  Sum_probs=36.5

Q ss_pred             CCCCHHHHHHHHcCCC-----chhhHHHhhhhHHHHhhhcCCchhhh
Q 043460            4 IYLSEDLITEILSRLP-----VKSVVGFKIVSKTWNNLISKVCIPRI   45 (368)
Q Consensus         4 ~~LP~Dll~~IL~rLp-----~~~l~r~r~Vck~Wr~li~~~~f~~~   45 (368)
                      ..||+|+|.+||.++-     .++|.++.+|||.|+-..++|.|-+.
T Consensus       108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~  154 (366)
T KOG2997|consen  108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL  154 (366)
T ss_pred             hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence            4799999999998654     59999999999999999999986443

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.44  E-value=0.38  Score=46.37  Aligned_cols=206  Identities=17%  Similarity=0.093  Sum_probs=102.2

Q ss_pred             eeEEEEcccCccceecCCCCcC--CCCCCCeeEEcCCCCCCeEEEEEEEe--CCCcEEEEEeCCCCCce--eccccCCCC
Q 043460          116 HRYYVCNPLTKQCVAIPKARED--VLASPPALAFHPCDSSHYKIIRFLRA--RMDPEVDIFSSENKTWI--TRKVSVKPR  189 (368)
Q Consensus       116 ~~~~v~NP~T~~~~~lP~~~~~--~~~~~~~l~~d~~~~~~ykvv~~~~~--~~~~~~~vyss~~~~W~--~~~~~~~~~  189 (368)
                      .++.|+|-+|++|.. |.-..+  ..+.++||..|.     -++++++..  -+...=+.|.+...+|+  .....++..
T Consensus        57 DELHvYNTatnqWf~-PavrGDiPpgcAA~GfvcdG-----trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~n  130 (830)
T KOG4152|consen   57 DELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCDG-----TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKN  130 (830)
T ss_pred             hhhhhhccccceeec-chhcCCCCCchhhcceEecC-----ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCC
Confidence            478899999999985 322211  223556777664     244444332  15667778888887764  433222221


Q ss_pred             -Cceeeeccce-EEEeCCeEEEEEe-----------------CCeEEEEEcCCCeEEEEEe-----CCCCCCCCCCceeE
Q 043460          190 -RPVSFYVLQS-VYSRGGILYNLTY-----------------RSTILRYNIEALSEAEIIE-----VPDKNNHPCDSEVI  245 (368)
Q Consensus       190 -~p~~~~~~~~-v~~~~G~lywl~~-----------------~~~il~fD~~~~~~~~~~~-----lP~~~~~~~~~~~l  245 (368)
                       .|-...-+.+ +.+ +.+.|..++                 +-+++-+.+..+.....++     +|..... +....-
T Consensus       131 G~pPCPRlGHSFsl~-gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRES-HTAViY  208 (830)
T KOG4152|consen  131 GPPPCPRLGHSFSLV-GNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRES-HTAVIY  208 (830)
T ss_pred             CCCCCCccCceeEEe-ccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCccc-ceeEEE
Confidence             1111111223 455 778888776                 2345555544543321222     3332221 101122


Q ss_pred             EeeCC---eEEEEEE-CCCeE-EEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCcc----------ccce
Q 043460          246 GLCKG---ALNYASR-NQSTL-LIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHV----------FGLT  310 (368)
Q Consensus       246 ~~~~G---~L~~~~~-~~~~~-~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~----------~~~~  310 (368)
                      ++-|.   ++++.+. +..++ .+|.|+-+.-               .|.+...-....+++.++-          +.+|
T Consensus       209 ~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl---------------~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGW  273 (830)
T KOG4152|consen  209 TEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTL---------------TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGW  273 (830)
T ss_pred             EeccCCcceEEEEcccccccccceeEEeccee---------------ecccccccCCCCCCcccccceeecceeEEecce
Confidence            22232   3444443 45554 7899999866               7988654334444443321          0122


Q ss_pred             EEEEEecCCCE---EEEeeCCeEEEEECCCCeEEEec
Q 043460          311 RFYNIHPNSDI---IFLGSCDMIYRYHLKTNKMELFS  344 (368)
Q Consensus       311 ~~~~~~~~~~~---v~~~~~~~~~~ydl~t~~~~~v~  344 (368)
                      .++-.+.-..-   -=......+-++|++|.+|+.+-
T Consensus       274 VPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~  310 (830)
T KOG4152|consen  274 VPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLL  310 (830)
T ss_pred             eeeeccccccccccceeeeccceeeeeecchheeeee
Confidence            22211100000   00003456889999999998764

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=95.27  E-value=1.5  Score=43.74  Aligned_cols=41  Identities=24%  Similarity=0.376  Sum_probs=36.8

Q ss_pred             CCCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCchhh
Q 043460            4 IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPR   44 (368)
Q Consensus         4 ~~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f~~   44 (368)
                      ..||.++...||..|+.+++++++.||+.|+.+.++...-.
T Consensus       109 ~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~  149 (537)
T KOG0274|consen  109 SLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW  149 (537)
T ss_pred             hcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence            36899999999999999999999999999999999865543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=94.10  E-value=3.7  Score=35.82  Aligned_cols=190  Identities=13%  Similarity=0.129  Sum_probs=100.4

Q ss_pred             CCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC--ce
Q 043460          103 CNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT--WI  180 (368)
Q Consensus       103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~--W~  180 (368)
                      .+|.+++..  ....++.+|+.||+...--..+....  .....      .+-+|+....   ...+..++..+|.  |+
T Consensus        35 ~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~~~~~~~--~~~~~------~~~~v~v~~~---~~~l~~~d~~tG~~~W~  101 (238)
T PF13360_consen   35 DGGRVYVAS--GDGNLYALDAKTGKVLWRFDLPGPIS--GAPVV------DGGRVYVGTS---DGSLYALDAKTGKVLWS  101 (238)
T ss_dssp             ETTEEEEEE--TTSEEEEEETTTSEEEEEEECSSCGG--SGEEE------ETTEEEEEET---TSEEEEEETTTSCEEEE
T ss_pred             eCCEEEEEc--CCCEEEEEECCCCCEEEEeecccccc--ceeee------cccccccccc---eeeeEecccCCcceeee
Confidence            577777764  67799999999998765332221111  00111      1223333321   2367778877875  88


Q ss_pred             e-ccccCCCCCceeeecc-ceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCC------CCceeEEeeCCeE
Q 043460          181 T-RKVSVKPRRPVSFYVL-QSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHP------CDSEVIGLCKGAL  252 (368)
Q Consensus       181 ~-~~~~~~~~~p~~~~~~-~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~------~~~~~l~~~~G~L  252 (368)
                      . .... +.   ...... ..... ++.+|.....+.|.++|+.+++-....+.+......      .....+...+|.+
T Consensus       102 ~~~~~~-~~---~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  176 (238)
T PF13360_consen  102 IYLTSS-PP---AGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRV  176 (238)
T ss_dssp             EEE-SS-CT---CSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEE
T ss_pred             eccccc-cc---cccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEE
Confidence            4 4321 11   111222 23444 677777776899999999988664344443211110      0012333446755


Q ss_pred             EEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEE-EecCCCEEEEee-CCeE
Q 043460          253 NYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYN-IHPNSDIIFLGS-CDMI  330 (368)
Q Consensus       253 ~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~-~~~~  330 (368)
                      ++...+...+.+ -+.....               .|+..  +.-  .            .+ ....++.+|+.. ...+
T Consensus       177 ~~~~~~g~~~~~-d~~tg~~---------------~w~~~--~~~--~------------~~~~~~~~~~l~~~~~~~~l  224 (238)
T PF13360_consen  177 YVSSGDGRVVAV-DLATGEK---------------LWSKP--ISG--I------------YSLPSVDGGTLYVTSSDGRL  224 (238)
T ss_dssp             EEECCTSSEEEE-ETTTTEE---------------EEEEC--SS---E------------CECEECCCTEEEEEETTTEE
T ss_pred             EEEcCCCeEEEE-ECCCCCE---------------EEEec--CCC--c------------cCCceeeCCEEEEEeCCCEE
Confidence            555544442333 2222111               46332  221  1            11 334678888874 7899


Q ss_pred             EEEECCCCeEEE
Q 043460          331 YRYHLKTNKMEL  342 (368)
Q Consensus       331 ~~ydl~t~~~~~  342 (368)
                      +++|++|++...
T Consensus       225 ~~~d~~tG~~~W  236 (238)
T PF13360_consen  225 YALDLKTGKVVW  236 (238)
T ss_dssp             EEEETTTTEEEE
T ss_pred             EEEECCCCCEEe
Confidence            999999999643

...

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa

Probab=93.47  E-value=0.73  Score=36.67  Aligned_cols=75  Identities=13%  Similarity=0.220  Sum_probs=53.6

Q ss_pred             CCeEEEEEcCCC--eEEEEEeCCCCCCCC----------CCceeEEeeCCeEEEEEEC----------CCeEEEEEEccC
Q 043460          213 RSTILRYNIEAL--SEAEIIEVPDKNNHP----------CDSEVIGLCKGALNYASRN----------QSTLLIWQLDDH  270 (368)
Q Consensus       213 ~~~il~fD~~~~--~~~~~~~lP~~~~~~----------~~~~~l~~~~G~L~~~~~~----------~~~~~IW~l~~~  270 (368)
                      ..+|+..|+-.+  .++ .+++|......          .....++..+|+|.++...          +..+.+|.|...
T Consensus         5 ~~GIL~CD~~~~~p~l~-~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~   83 (131)
T PF07762_consen    5 WRGILFCDVFDDSPVLR-FVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDP   83 (131)
T ss_pred             CCCEEEEECCCCCccEE-EEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccC
Confidence            356788888876  667 89999764221          1245677899999999872          225899999984


Q ss_pred             ---CCCCCCCCCccCCCCCCceEEEEEeeecccccc
Q 043460          271 ---RHHSNSHGSNKAASGARSWILKHSICMDEWGNK  303 (368)
Q Consensus       271 ---~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~  303 (368)
                         ..               .|.+.+++....+...
T Consensus        84 ~~~~~---------------~W~~d~~v~~~diw~~  104 (131)
T PF07762_consen   84 EGSSW---------------EWKKDCEVDLSDIWAD  104 (131)
T ss_pred             CCCCC---------------CEEEeEEEEhhhccCC
Confidence               33               8999999986655543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.39  E-value=4.3  Score=36.49  Aligned_cols=132  Identities=15%  Similarity=0.167  Sum_probs=81.4

Q ss_pred             CCCCCCcEEEecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEE
Q 043460           91 PSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVD  170 (368)
Q Consensus        91 p~~~~~~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~  170 (368)
                      |......-+++.-+|-|-+..- ....+.-.||.++.-..+|.+..... ..=.+.-|+.  +.-.+-    ....-.+.
T Consensus       186 PqG~gpyGi~atpdGsvwyasl-agnaiaridp~~~~aev~p~P~~~~~-gsRriwsdpi--g~~wit----twg~g~l~  257 (353)
T COG4257         186 PQGGGPYGICATPDGSVWYASL-AGNAIARIDPFAGHAEVVPQPNALKA-GSRRIWSDPI--GRAWIT----TWGTGSLH  257 (353)
T ss_pred             CCCCCCcceEECCCCcEEEEec-cccceEEcccccCCcceecCCCcccc-cccccccCcc--CcEEEe----ccCCceee
Confidence            4333345677788888877653 45567789999998888887763111 1112233431  111111    11466789


Q ss_pred             EEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCC
Q 043460          171 IFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY--RSTILRYNIEALSEAEIIEVPDKNN  237 (368)
Q Consensus       171 vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~  237 (368)
                      .|+..+.+|.+=.-  |.    .-....++++.+--.-|+.+  .+.|..||+++++|+ ++++|....
T Consensus       258 rfdPs~~sW~eypL--Pg----s~arpys~rVD~~grVW~sea~agai~rfdpeta~ft-v~p~pr~n~  319 (353)
T COG4257         258 RFDPSVTSWIEYPL--PG----SKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFT-VLPIPRPNS  319 (353)
T ss_pred             EeCcccccceeeeC--CC----CCCCcceeeeccCCcEEeeccccCceeecCcccceEE-EecCCCCCC
Confidence            99999999987652  11    11122345662333556655  789999999999999 999887643

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=93.15  E-value=0.33  Score=30.70  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=28.5

Q ss_pred             ceEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEEeCC
Q 043460          198 QSVYSRGGILYNLTY-------RSTILRYNIEALSEAEIIEVP  233 (368)
Q Consensus       198 ~~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~~lP  233 (368)
                      .++.+ ++.||.+++       ...+..||+.+.+|+..-++|
T Consensus         6 ~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    6 AAVVV-GNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEEE-TTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             EEEEE-CCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            36778 999999998       357999999999999444554

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=93.13  E-value=5.4  Score=35.69  Aligned_cols=72  Identities=18%  Similarity=0.258  Sum_probs=53.9

Q ss_pred             ceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCC--------CCCceeEEeeCCeEEEEEEC---CCeEEEE
Q 043460          198 QSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNH--------PCDSEVIGLCKGALNYASRN---QSTLLIW  265 (368)
Q Consensus       198 ~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~--------~~~~~~l~~~~G~L~~~~~~---~~~~~IW  265 (368)
                      .-|.. ||.+|.... ...|+.||+.+++......||.....        ......+++-+..|-++...   ..++.|-
T Consensus        73 G~vVY-ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvs  151 (250)
T PF02191_consen   73 GHVVY-NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVS  151 (250)
T ss_pred             CeEEE-CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEE
Confidence            35777 999999997 68999999999988756778865432        12246677778888888772   3368888


Q ss_pred             EEccC
Q 043460          266 QLDDH  270 (368)
Q Consensus       266 ~l~~~  270 (368)
                      .|+..
T Consensus       152 kld~~  156 (250)
T PF02191_consen  152 KLDPE  156 (250)
T ss_pred             eeCcc
Confidence            88875

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF13964 Kelch_6: Kelch motif

Probab=93.04  E-value=0.23  Score=32.12  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=26.9

Q ss_pred             cceEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEE
Q 043460          197 LQSVYSRGGILYNLTY-------RSTILRYNIEALSEAEII  230 (368)
Q Consensus       197 ~~~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~  230 (368)
                      ..++.+ +|.||.+++       ...+..||+.+.+|+ .+
T Consensus         5 ~s~v~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~   43 (50)
T PF13964_consen    5 HSAVVV-GGKIYVFGGYDNSGKYSNDVERYDPETNTWE-QL   43 (50)
T ss_pred             CEEEEE-CCEEEEECCCCCCCCccccEEEEcCCCCcEE-EC
Confidence            346888 999999998       267999999999999 44

>smart00284 OLF Olfactomedin-like domains

Probab=92.93  E-value=6.5  Score=35.15  Aligned_cols=76  Identities=14%  Similarity=0.096  Sum_probs=54.0

Q ss_pred             eeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCC-C-------CCCCceeEEeeCCeEEEEEE---CCCe
Q 043460          194 FYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKN-N-------HPCDSEVIGLCKGALNYASR---NQST  261 (368)
Q Consensus       194 ~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~-~-------~~~~~~~l~~~~G~L~~~~~---~~~~  261 (368)
                      +....-|+. ||.+|.... ...|+.||+.+++......+|... .       .....+-+++-+..|-++..   +..+
T Consensus        74 ~~GtG~VVY-ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~  152 (255)
T smart00284       74 GQGTGVVVY-NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK  152 (255)
T ss_pred             cccccEEEE-CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCC
Confidence            333345888 999999876 578999999999996355577532 1       11235677788888888766   3457


Q ss_pred             EEEEEEccC
Q 043460          262 LLIWQLDDH  270 (368)
Q Consensus       262 ~~IW~l~~~  270 (368)
                      |.|-.|+..
T Consensus       153 ivvSkLnp~  161 (255)
T smart00284      153 IVISKLNPA  161 (255)
T ss_pred             EEEEeeCcc
Confidence            888888875

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=92.93  E-value=6.2  Score=34.86  Aligned_cols=201  Identities=12%  Similarity=0.080  Sum_probs=106.9

Q ss_pred             EecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc
Q 043460          100 IDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW  179 (368)
Q Consensus       100 ~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W  179 (368)
                      .+..+|-|+..+. ...+++.++|.+++...++.+.      ..++.++..   +-+++...    .....+++..++.+
T Consensus         7 ~d~~~g~l~~~D~-~~~~i~~~~~~~~~~~~~~~~~------~~G~~~~~~---~g~l~v~~----~~~~~~~d~~~g~~   72 (246)
T PF08450_consen    7 WDPRDGRLYWVDI-PGGRIYRVDPDTGEVEVIDLPG------PNGMAFDRP---DGRLYVAD----SGGIAVVDPDTGKV   72 (246)
T ss_dssp             EETTTTEEEEEET-TTTEEEEEETTTTEEEEEESSS------EEEEEEECT---TSEEEEEE----TTCEEEEETTTTEE
T ss_pred             EECCCCEEEEEEc-CCCEEEEEECCCCeEEEEecCC------CceEEEEcc---CCEEEEEE----cCceEEEecCCCcE
Confidence            3444666666654 5678999999999886544332      346676631   22333332    34556679999999


Q ss_pred             eeccccCCCCCceeeeccceEEEeCCeEEEEEe-------C--CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCC
Q 043460          180 ITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-------R--STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKG  250 (368)
Q Consensus       180 ~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-------~--~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G  250 (368)
                      +..........+....+.-.+-- +|.+|.-..       .  +.+..+|.. ++.. .+.-.....    +......+|
T Consensus        73 ~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~~~p----NGi~~s~dg  145 (246)
T PF08450_consen   73 TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGLGFP----NGIAFSPDG  145 (246)
T ss_dssp             EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEESSE----EEEEEETTS
T ss_pred             EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEE-EEecCcccc----cceEECCcc
Confidence            87764321111122122223444 888777654       1  569999999 6655 332111111    223334466


Q ss_pred             e-EEEEEECCCeEEEEEEccC--CCCCCCCCCccCCCCCCceEEEEEe-eeccccccCccccceEEEEEecCCCEEEEe-
Q 043460          251 A-LNYASRNQSTLLIWQLDDH--RHHSNSHGSNKAASGARSWILKHSI-CMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-  325 (368)
Q Consensus       251 ~-L~~~~~~~~~~~IW~l~~~--~~~~~~~~~~~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-  325 (368)
                      + |++......+  ||..+-.  +.               .+.....+ ++....      ....=+++..+|+ ||+. 
T Consensus       146 ~~lyv~ds~~~~--i~~~~~~~~~~---------------~~~~~~~~~~~~~~~------g~pDG~~vD~~G~-l~va~  201 (246)
T PF08450_consen  146 KTLYVADSFNGR--IWRFDLDADGG---------------ELSNRRVFIDFPGGP------GYPDGLAVDSDGN-LWVAD  201 (246)
T ss_dssp             SEEEEEETTTTE--EEEEEEETTTC---------------CEEEEEEEEE-SSSS------CEEEEEEEBTTS--EEEEE
T ss_pred             hheeecccccce--eEEEecccccc---------------ceeeeeeEEEcCCCC------cCCCcceEcCCCC-EEEEE
Confidence            5 5555545555  5555543  32               46555444 222211      0112244555555 5555 


Q ss_pred             -eCCeEEEEECCCCeEEEecc
Q 043460          326 -SCDMIYRYHLKTNKMELFST  345 (368)
Q Consensus       326 -~~~~~~~ydl~t~~~~~v~~  345 (368)
                       ...++.+||++.+..+.+..
T Consensus       202 ~~~~~I~~~~p~G~~~~~i~~  222 (246)
T PF08450_consen  202 WGGGRIVVFDPDGKLLREIEL  222 (246)
T ss_dssp             ETTTEEEEEETTSCEEEEEE-
T ss_pred             cCCCEEEEECCCccEEEEEcC
Confidence             67899999999666666665

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13964 Kelch_6: Kelch motif

Probab=92.45  E-value=0.22  Score=32.16  Aligned_cols=22  Identities=14%  Similarity=0.126  Sum_probs=19.5

Q ss_pred             CCeeEEEEcccCccceecCCCC
Q 043460          114 SKHRYYVCNPLTKQCVAIPKAR  135 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~~~lP~~~  135 (368)
                      ....+.++||.|++|..+|+++
T Consensus        26 ~~~~v~~yd~~t~~W~~~~~mp   47 (50)
T PF13964_consen   26 YSNDVERYDPETNTWEQLPPMP   47 (50)
T ss_pred             ccccEEEEcCCCCcEEECCCCC
Confidence            3568999999999999999887

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=91.73  E-value=11  Score=34.95  Aligned_cols=170  Identities=14%  Similarity=0.218  Sum_probs=94.8

Q ss_pred             CCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecccc-CCCC-CceeeeccceEEEeCCe-EEEEEe-CCeE
Q 043460          141 SPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVS-VKPR-RPVSFYVLQSVYSRGGI-LYNLTY-RSTI  216 (368)
Q Consensus       141 ~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~-~~~~-~p~~~~~~~~v~~~~G~-lywl~~-~~~i  216 (368)
                      +.+.-.++|  .++|-++.--   +.-.+.+|+..+|.-...... ++++ .|.+...+.     ||+ .|.+++ .+.|
T Consensus       146 h~H~a~~tP--~~~~l~v~DL---G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-----n~k~aY~v~EL~stV  215 (346)
T COG2706         146 HVHSANFTP--DGRYLVVPDL---GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-----NGKYAYLVNELNSTV  215 (346)
T ss_pred             ccceeeeCC--CCCEEEEeec---CCceEEEEEcccCccccccccccCCCCCcceEEEcC-----CCcEEEEEeccCCEE
Confidence            455556666  2345444322   467899999998876654421 1221 233332222     554 677776 5666


Q ss_pred             EEEEcCC--CeEEEEE----eCCCCCCCCCCceeEE-eeCCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCc
Q 043460          217 LRYNIEA--LSEAEII----EVPDKNNHPCDSEVIG-LCKGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARS  288 (368)
Q Consensus       217 l~fD~~~--~~~~~~~----~lP~~~~~~~~~~~l~-~~~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~  288 (368)
                      .++....  .++. .+    .+|.+..+......+- ..+|+ |++.......+.+..++..++               .
T Consensus       216 ~v~~y~~~~g~~~-~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g---------------~  279 (346)
T COG2706         216 DVLEYNPAVGKFE-ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG---------------K  279 (346)
T ss_pred             EEEEEcCCCceEE-EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC---------------E
Confidence            6555555  6776 33    3676654432222222 34675 555555555666677777644               4


Q ss_pred             eEEEEEeeec-cccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeEEEecc
Q 043460          289 WILKHSICMD-EWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKMELFST  345 (368)
Q Consensus       289 W~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~~~v~~  345 (368)
                      =+.+...+.+ .+++         -+.+...+++++..    +.-.+|.-|.+|++++++..
T Consensus       280 L~~~~~~~teg~~PR---------~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~  332 (346)
T COG2706         280 LELVGITPTEGQFPR---------DFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR  332 (346)
T ss_pred             EEEEEEeccCCcCCc---------cceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence            4444444422 2232         23455566666665    33468888999999998876

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.10  E-value=3.8  Score=38.03  Aligned_cols=164  Identities=12%  Similarity=0.121  Sum_probs=97.8

Q ss_pred             cEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCC-eEEEEEe---------------------------------
Q 043460          167 PEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGG-ILYNLTY---------------------------------  212 (368)
Q Consensus       167 ~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G-~lywl~~---------------------------------  212 (368)
                      ..+-.|++.+++|...++..    |..+....++.. ++ .+|+..+                                 
T Consensus       113 nd~Y~y~p~~nsW~kl~t~s----P~gl~G~~~~~~-~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~  187 (381)
T COG3055         113 NDAYRYDPSTNSWHKLDTRS----PTGLVGASTFSL-NGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK  187 (381)
T ss_pred             eeeEEecCCCChhheecccc----ccccccceeEec-CCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence            35778999999999998543    345444445666 55 8888776                                 


Q ss_pred             -------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC----CCeEEEEEEccC--CCCCCCCCC
Q 043460          213 -------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN----QSTLLIWQLDDH--RHHSNSHGS  279 (368)
Q Consensus       213 -------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~----~~~~~IW~l~~~--~~~~~~~~~  279 (368)
                             ...+++||+.+.+|+..-..|......   ...+.-+++|.++..+    -++-.+|+.+-.  ..       
T Consensus       188 ~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG---sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~-------  257 (381)
T COG3055         188 KAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG---SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNL-------  257 (381)
T ss_pred             CHHHhcccccccccccccchhhhcCcCcccCccC---cceeecCCeEEEEcceecCCccccceeEEEeccCce-------
Confidence                   256999999999999333477665432   2333345668888773    245566665543  33       


Q ss_pred             ccCCCCCCceEEEEEeeeccccccCccccceEEEE-Eec--CCCEEEEe-------------------------eCCeEE
Q 043460          280 NKAASGARSWILKHSICMDEWGNKLHVFGLTRFYN-IHP--NSDIIFLG-------------------------SCDMIY  331 (368)
Q Consensus       280 ~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~-~~~--~~~~v~~~-------------------------~~~~~~  331 (368)
                              .|.+....+.+.-.+..      -+.+ +..  ++.+++..                         -...|+
T Consensus       258 --------~w~~l~~lp~~~~~~~e------GvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy  323 (381)
T COG3055         258 --------KWLKLSDLPAPIGSNKE------GVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVY  323 (381)
T ss_pred             --------eeeeccCCCCCCCCCcc------ccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEE
Confidence                    89998766522111111      0111 111  22222221                         145688


Q ss_pred             EEECCCCeEEEecc-CCCcceeeeeeeeecc
Q 043460          332 RYHLKTNKMELFST-RSPLHLYRLALLSSCR  361 (368)
Q Consensus       332 ~ydl~t~~~~~v~~-~~~~~~~~~~py~p~~  361 (368)
                      .+|  .+.|+.++. ....++...+.|=..+
T Consensus       324 ~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~v  352 (381)
T COG3055         324 IFD--NGSWKIVGELPQGLAYGVSLSYNNKV  352 (381)
T ss_pred             EEc--CCceeeecccCCCccceEEEecCCcE
Confidence            888  889999988 5554555566654433

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=90.74  E-value=10  Score=32.88  Aligned_cols=138  Identities=13%  Similarity=0.153  Sum_probs=80.1

Q ss_pred             EEEEEeCCCCC--ceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeE
Q 043460          168 EVDIFSSENKT--WITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVI  245 (368)
Q Consensus       168 ~~~vyss~~~~--W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l  245 (368)
                      .+..++..+|+  |+..-..   .  ........+.. +|.+|.......+.++|..+++......++.....     ..
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~---~--~~~~~~~~~~~-~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-----~~   72 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGP---G--IGGPVATAVPD-GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-----AP   72 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSS---S--CSSEEETEEEE-TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS-----GE
T ss_pred             EEEEEECCCCCEEEEEECCC---C--CCCccceEEEe-CCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc-----ee
Confidence            46778887775  8774311   0  11111224556 99999987799999999988766535556543322     13


Q ss_pred             EeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEE-EEEeeeccccccCccccceEEEEEecCCCEEEE
Q 043460          246 GLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWIL-KHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFL  324 (368)
Q Consensus       246 ~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  324 (368)
                      ...++.+++...+.   .|+.++..++             ...|.. ...-+...+..      ... ..+.  ++.+++
T Consensus        73 ~~~~~~v~v~~~~~---~l~~~d~~tG-------------~~~W~~~~~~~~~~~~~~------~~~-~~~~--~~~~~~  127 (238)
T PF13360_consen   73 VVDGGRVYVGTSDG---SLYALDAKTG-------------KVLWSIYLTSSPPAGVRS------SSS-PAVD--GDRLYV  127 (238)
T ss_dssp             EEETTEEEEEETTS---EEEEEETTTS-------------CEEEEEEE-SSCTCSTB--------SE-EEEE--TTEEEE
T ss_pred             eeccccccccccee---eeEecccCCc-------------ceeeeecccccccccccc------ccC-ceEe--cCEEEE
Confidence            56788887776433   6777763211             127884 33322111110      011 1222  566666


Q ss_pred             e-eCCeEEEEECCCCeEE
Q 043460          325 G-SCDMIYRYHLKTNKME  341 (368)
Q Consensus       325 ~-~~~~~~~ydl~t~~~~  341 (368)
                      . ....++.+|++|++..
T Consensus       128 ~~~~g~l~~~d~~tG~~~  145 (238)
T PF13360_consen  128 GTSSGKLVALDPKTGKLL  145 (238)
T ss_dssp             EETCSEEEEEETTTTEEE
T ss_pred             EeccCcEEEEecCCCcEE
Confidence            6 4889999999999863

...

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.63  E-value=20  Score=34.43  Aligned_cols=116  Identities=21%  Similarity=0.228  Sum_probs=66.4

Q ss_pred             EEeCCeEEEEEe----CCeEEEEEcCCCe---EEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCC
Q 043460          201 YSRGGILYNLTY----RSTILRYNIEALS---EAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHH  273 (368)
Q Consensus       201 ~~~~G~lywl~~----~~~il~fD~~~~~---~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~  273 (368)
                      .. ++.+|.++.    ...|+++|+.+..   |. .+-+|......  -..+...++.|++....+..-+|.+++-. . 
T Consensus       285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~-~~l~~~~~~~~--l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~-  358 (414)
T PF02897_consen  285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWW-TVLIPEDEDVS--LEDVSLFKDYLVLSYRENGSSRLRVYDLD-D-  358 (414)
T ss_dssp             EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEE-EEEE--SSSEE--EEEEEEETTEEEEEEEETTEEEEEEEETT---
T ss_pred             cc-CCEEEEeeCCCCCCcEEEEecccccccccce-eEEcCCCCcee--EEEEEEECCEEEEEEEECCccEEEEEECC-C-
Confidence            44 888998887    5789999999876   55 33333322111  22444568899888886555445444443 1 


Q ss_pred             CCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-----eCCeEEEEECCCCeEEEec
Q 043460          274 SNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-----SCDMIYRYHLKTNKMELFS  344 (368)
Q Consensus       274 ~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~ydl~t~~~~~v~  344 (368)
                                    .|.... +++....       .+..+....+++.+++.     ....++.||+.|++.+.+.
T Consensus       359 --------------~~~~~~-~~~p~~g-------~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k  412 (414)
T PF02897_consen  359 --------------GKESRE-IPLPEAG-------SVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK  412 (414)
T ss_dssp             --------------TEEEEE-EESSSSS-------EEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred             --------------CcEEee-ecCCcce-------EEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence                          244332 3322222       11222233466667775     5678999999999998764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.18  E-value=15  Score=33.09  Aligned_cols=110  Identities=14%  Similarity=0.133  Sum_probs=72.9

Q ss_pred             ceEEE-eCCeEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCC
Q 043460          198 QSVYS-RGGILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHH  273 (368)
Q Consensus       198 ~~v~~-~~G~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~  273 (368)
                      +++.. ++|.+|=-++   +..|..+|+.+++.....++|...-    .--++..+++|+.+...+...-++-.+.    
T Consensus        48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F----gEGit~~~d~l~qLTWk~~~~f~yd~~t----  119 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF----GEGITILGDKLYQLTWKEGTGFVYDPNT----  119 (264)
T ss_dssp             EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT------EEEEEEETTEEEEEESSSSEEEEEETTT----
T ss_pred             ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc----ceeEEEECCEEEEEEecCCeEEEEcccc----
Confidence            44433 4889988887   5789999999998865889997643    3467788999999998777776665543    


Q ss_pred             CCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEE
Q 043460          274 SNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKME  341 (368)
Q Consensus       274 ~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~  341 (368)
                                     ..++.++..+.        .++   |++.+++.+++. ++.+++..|+++-+..
T Consensus       120 ---------------l~~~~~~~y~~--------EGW---GLt~dg~~Li~SDGS~~L~~~dP~~f~~~  162 (264)
T PF05096_consen  120 ---------------LKKIGTFPYPG--------EGW---GLTSDGKRLIMSDGSSRLYFLDPETFKEV  162 (264)
T ss_dssp             ---------------TEEEEEEE-SS--------S-----EEEECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred             ---------------ceEEEEEecCC--------cce---EEEcCCCEEEEECCccceEEECCcccceE
Confidence                           45555665431        223   444556666666 6678999999887654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=88.49  E-value=21  Score=33.17  Aligned_cols=199  Identities=12%  Similarity=0.133  Sum_probs=106.7

Q ss_pred             EEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCC-CC-ceecccc-CCCCCce---
Q 043460          119 YVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSEN-KT-WITRKVS-VKPRRPV---  192 (368)
Q Consensus       119 ~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~-~~-W~~~~~~-~~~~~p~---  192 (368)
                      |=+||..|+...|=....... ....+..|+  .++|-+.+-+.   .-.+.||-.++ |+ |..+... .+...|.   
T Consensus        69 y~iD~~~G~Lt~ln~~~~~g~-~p~yvsvd~--~g~~vf~AnY~---~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ  142 (346)
T COG2706          69 YRIDPDDGRLTFLNRQTLPGS-PPCYVSVDE--DGRFVFVANYH---SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ  142 (346)
T ss_pred             EEEcCCCCeEEEeeccccCCC-CCeEEEECC--CCCEEEEEEcc---CceEEEEEcccCCccccceeeeecCCCCCCccc
Confidence            335565555444432221111 114566676  35666665553   46788888855 44 4332211 1111011   


Q ss_pred             -eeeccc-eEEEeCCeEEEEEe--CCeEEEEEcCCCeEEE--EEeCCCCCCCCCCceeEEee-CCeEEEEEE-CCCeEEE
Q 043460          193 -SFYVLQ-SVYSRGGILYNLTY--RSTILRYNIEALSEAE--IIEVPDKNNHPCDSEVIGLC-KGALNYASR-NQSTLLI  264 (368)
Q Consensus       193 -~~~~~~-~v~~~~G~lywl~~--~~~il~fD~~~~~~~~--~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~-~~~~~~I  264 (368)
                       ....+. ..-= +|..-|.+.  ...|..||++.++..+  ...+++...    ...++.. +|+++++.. -..++.+
T Consensus       143 ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~G----PRHi~FHpn~k~aY~v~EL~stV~v  217 (346)
T COG2706         143 ESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAG----PRHIVFHPNGKYAYLVNELNSTVDV  217 (346)
T ss_pred             cCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCC----cceEEEcCCCcEEEEEeccCCEEEE
Confidence             000000 1112 344444444  5677777777665541  112322211    2344444 788776665 5789999


Q ss_pred             EEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeE
Q 043460          265 WQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKM  340 (368)
Q Consensus       265 W~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~  340 (368)
                      |..+...+               +-+.+.++.  .++.+..+.....-+.+.++|.++|..    +.-.+|..|..++++
T Consensus       218 ~~y~~~~g---------------~~~~lQ~i~--tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L  280 (346)
T COG2706         218 LEYNPAVG---------------KFEELQTID--TLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKL  280 (346)
T ss_pred             EEEcCCCc---------------eEEEeeeec--cCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEE
Confidence            99998644               566666555  233222222445556778899999998    344688889999998


Q ss_pred             EEecc
Q 043460          341 ELFST  345 (368)
Q Consensus       341 ~~v~~  345 (368)
                      +.+..
T Consensus       281 ~~~~~  285 (346)
T COG2706         281 ELVGI  285 (346)
T ss_pred             EEEEE
Confidence            87765

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.33  E-value=22  Score=33.22  Aligned_cols=108  Identities=14%  Similarity=0.161  Sum_probs=62.9

Q ss_pred             CcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe----------CCeEEEEEcCCCeEEEEEeCCCC
Q 043460          166 DPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY----------RSTILRYNIEALSEAEIIEVPDK  235 (368)
Q Consensus       166 ~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~----------~~~il~fD~~~~~~~~~~~lP~~  235 (368)
                      ...+-+|++.++.|+.....     |+.-..+.++.. .|..-++..          .....-|.-...+|...-++|..
T Consensus       195 n~ev~sy~p~~n~W~~~G~~-----pf~~~aGsa~~~-~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~  268 (381)
T COG3055         195 NKEVLSYDPSTNQWRNLGEN-----PFYGNAGSAVVI-KGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAP  268 (381)
T ss_pred             cccccccccccchhhhcCcC-----cccCccCcceee-cCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCC
Confidence            45678899999999988732     233334445555 555444433          23445555567788844466665


Q ss_pred             CCCCCCce----eEEeeCCeEEEEEE----------------------CCCeEEEEEEccCCCCCCCCCCccCCCCCCce
Q 043460          236 NNHPCDSE----VIGLCKGALNYASR----------------------NQSTLLIWQLDDHRHHSNSHGSNKAASGARSW  289 (368)
Q Consensus       236 ~~~~~~~~----~l~~~~G~L~~~~~----------------------~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W  289 (368)
                      ..... ..    .-+.++|.+.+...                      ...+-+||.+++  +               +|
T Consensus       269 ~~~~~-eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~--g---------------~W  330 (381)
T COG3055         269 IGSNK-EGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN--G---------------SW  330 (381)
T ss_pred             CCCCc-cccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC--C---------------ce
Confidence            43221 12    22344555555543                      012357888884  5               89


Q ss_pred             EEEEEeee
Q 043460          290 ILKHSICM  297 (368)
Q Consensus       290 ~~~~~i~~  297 (368)
                      ..+..++.
T Consensus       331 k~~GeLp~  338 (381)
T COG3055         331 KIVGELPQ  338 (381)
T ss_pred             eeecccCC
Confidence            99999884

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=88.27  E-value=22  Score=33.27  Aligned_cols=220  Identities=15%  Similarity=0.209  Sum_probs=113.9

Q ss_pred             cEEEecCCcEEEEeecC--CCee--EEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEE
Q 043460           97 YALIDCCNGLILLGSSL--SKHR--YYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIF  172 (368)
Q Consensus        97 ~~~~~s~~Glll~~~~~--~~~~--~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vy  172 (368)
                      +..++..+.+|.+....  ....  .+-+++.+++...+-..+. .....+.+.+++.  +.|-++.-+   ..-.+.+|
T Consensus        41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~--g~~l~vany---~~g~v~v~  114 (345)
T PF10282_consen   41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPD--GRFLYVANY---GGGSVSVF  114 (345)
T ss_dssp             CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTT--SSEEEEEET---TTTEEEEE
T ss_pred             eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecC--CCEEEEEEc---cCCeEEEE
Confidence            33344445555444431  1223  3345565566555433221 1123346777772  455554433   35678888


Q ss_pred             eCCCC-CceeccccC-------CCCCceeeeccceEEEeCCeEEEEEe--CCeEEEEEcCCCe--EEE--EEeCCCCCCC
Q 043460          173 SSENK-TWITRKVSV-------KPRRPVSFYVLQSVYSRGGILYNLTY--RSTILRYNIEALS--EAE--IIEVPDKNNH  238 (368)
Q Consensus       173 ss~~~-~W~~~~~~~-------~~~~p~~~~~~~~v~~~~G~lywl~~--~~~il~fD~~~~~--~~~--~~~lP~~~~~  238 (368)
                      ...+. +=.......       .+........+..+.--+|...|...  ...|..|+...+.  ...  .+.+|.... 
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G-  193 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG-  193 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS-
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC-
Confidence            88763 222211000       00000111112222221566555554  6788999988766  531  455665432 


Q ss_pred             CCCceeEEee-CCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee-ecc-ccccCccccceEEEE
Q 043460          239 PCDSEVIGLC-KGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC-MDE-WGNKLHVFGLTRFYN  314 (368)
Q Consensus       239 ~~~~~~l~~~-~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~-~~~-~~~~~~~~~~~~~~~  314 (368)
                         ...++.. +|+ +|++.....++.++.++..+.               .++.+..+. ++. +...    ....=+.
T Consensus       194 ---PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g---------------~~~~~~~~~~~~~~~~~~----~~~~~i~  251 (345)
T PF10282_consen  194 ---PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG---------------SLTEIQTISTLPEGFTGE----NAPAEIA  251 (345)
T ss_dssp             ---EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT---------------EEEEEEEEESCETTSCSS----SSEEEEE
T ss_pred             ---CcEEEEcCCcCEEEEecCCCCcEEEEeecccCC---------------ceeEEEEeeecccccccc----CCceeEE
Confidence               2344444 554 555555677899998885444               788887777 322 1111    1344567


Q ss_pred             EecCCCEEEEe--eCCeEEEEEC--CCCeEEEecc
Q 043460          315 IHPNSDIIFLG--SCDMIYRYHL--KTNKMELFST  345 (368)
Q Consensus       315 ~~~~~~~v~~~--~~~~~~~ydl--~t~~~~~v~~  345 (368)
                      +.+++..+|+.  ....|..|++  ++++++.+..
T Consensus       252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~  286 (345)
T PF10282_consen  252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT  286 (345)
T ss_dssp             E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred             EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence            88999999998  5567888887  5567776654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=88.06  E-value=22  Score=33.42  Aligned_cols=127  Identities=10%  Similarity=0.111  Sum_probs=69.1

Q ss_pred             CCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC---C-------eEEEEEEccCCCC
Q 043460          204 GGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ---S-------TLLIWQLDDHRHH  273 (368)
Q Consensus       204 ~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~---~-------~~~IW~l~~~~~~  273 (368)
                      +.+|..+.....++.||.++....   .+|....... .......+|+||+.....   .       .++.-....... 
T Consensus        76 gskIv~~d~~~~t~vyDt~t~av~---~~P~l~~pk~-~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~-  150 (342)
T PF07893_consen   76 GSKIVAVDQSGRTLVYDTDTRAVA---TGPRLHSPKR-CPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPD-  150 (342)
T ss_pred             CCeEEEEcCCCCeEEEECCCCeEe---ccCCCCCCCc-ceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccc-
Confidence            556666655677999999988877   4444322221 223344478899887621   1       333332221000 


Q ss_pred             CCCCCCccCCCCCCceEEEEEeeeccccccCccc-cceEEEEEecCCCEEEEe-eCC--eEEEEECCCCeEEEecc
Q 043460          274 SNSHGSNKAASGARSWILKHSICMDEWGNKLHVF-GLTRFYNIHPNSDIIFLG-SCD--MIYRYHLKTNKMELFST  345 (368)
Q Consensus       274 ~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~-~~~--~~~~ydl~t~~~~~v~~  345 (368)
                            .....+..+|..   ++.+.+....... ..+.-.+++ +|.-|++. ...  ..|+||.++.+|+++++
T Consensus       151 ------~~~~~~~w~W~~---LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd  216 (342)
T PF07893_consen  151 ------DPSPEESWSWRS---LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHGD  216 (342)
T ss_pred             ------cccCCCcceEEc---CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeeccc
Confidence                  001122335555   4423333322100 013334556 78889996 333  69999999999999976

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=86.51  E-value=1.8  Score=27.70  Aligned_cols=31  Identities=13%  Similarity=0.185  Sum_probs=25.5

Q ss_pred             ceEEEeCCeEEEEEe---------CCeEEEEEcCCCeEEEEE
Q 043460          198 QSVYSRGGILYNLTY---------RSTILRYNIEALSEAEII  230 (368)
Q Consensus       198 ~~v~~~~G~lywl~~---------~~~il~fD~~~~~~~~~~  230 (368)
                      .++.+ +++||..++         ...+..||+++.+|+ .+
T Consensus         6 s~~~~-~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~-~~   45 (49)
T PF07646_consen    6 SAVVL-DGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWT-EL   45 (49)
T ss_pred             EEEEE-CCEEEEECCcccCCCCcccceeEEEECCCCEEe-ec
Confidence            46778 999999886         357899999999999 44

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=86.41  E-value=29  Score=32.54  Aligned_cols=173  Identities=15%  Similarity=0.287  Sum_probs=97.8

Q ss_pred             CCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC--ceeccc-cCCC-CCceeeeccceEEEeCC-eEEEEEe-
Q 043460          139 LASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT--WITRKV-SVKP-RRPVSFYVLQSVYSRGG-ILYNLTY-  212 (368)
Q Consensus       139 ~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~--W~~~~~-~~~~-~~p~~~~~~~~v~~~~G-~lywl~~-  212 (368)
                      ..+.+...++|.  ++|-.+.-.   +.-.+.+|+...+.  ...... ..+. ..|.+.....     +| .+|.+.+ 
T Consensus       143 ~~h~H~v~~~pd--g~~v~v~dl---G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-----dg~~~Yv~~e~  212 (345)
T PF10282_consen  143 GPHPHQVVFSPD--GRFVYVPDL---GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-----DGKYAYVVNEL  212 (345)
T ss_dssp             STCEEEEEE-TT--SSEEEEEET---TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-----TSSEEEEEETT
T ss_pred             cccceeEEECCC--CCEEEEEec---CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-----CcCEEEEecCC
Confidence            345667788882  455444322   46688888887765  544221 1111 1233332221     44 5777776 


Q ss_pred             CCeEEEEEcC--CCeEEEEE----eCCCCCCCCCCceeEEee-CCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCC
Q 043460          213 RSTILRYNIE--ALSEAEII----EVPDKNNHPCDSEVIGLC-KGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAAS  284 (368)
Q Consensus       213 ~~~il~fD~~--~~~~~~~~----~lP~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~  284 (368)
                      ...|.+|+..  +.++. .+    .+|...........+..+ +|+ |++.......+.++.++..++            
T Consensus       213 s~~v~v~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g------------  279 (345)
T PF10282_consen  213 SNTVSVFDYDPSDGSLT-EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG------------  279 (345)
T ss_dssp             TTEEEEEEEETTTTEEE-EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT------------
T ss_pred             CCcEEEEeecccCCcee-EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC------------
Confidence            6778888888  66665 32    244332221112344444 665 666666888999999977544            


Q ss_pred             CCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEE--ECCCCeEEEecc
Q 043460          285 GARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRY--HLKTNKMELFST  345 (368)
Q Consensus       285 ~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~y--dl~t~~~~~v~~  345 (368)
                         .-+++..++...        ...+-+.+.++++.+++.  ....+..|  |.+|++++.+..
T Consensus       280 ---~l~~~~~~~~~G--------~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~  333 (345)
T PF10282_consen  280 ---TLTLVQTVPTGG--------KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS  333 (345)
T ss_dssp             ---TEEEEEEEEESS--------SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred             ---ceEEEEEEeCCC--------CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence               566666665321        113446778899999887  44455555  668889988764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=85.88  E-value=0.58  Score=44.31  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=34.0

Q ss_pred             CCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCC
Q 043460            5 YLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKV   40 (368)
Q Consensus         5 ~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~   40 (368)
                      .||.|++..||+-|..+++.|++.+|+.|+.+..|.
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~  109 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG  109 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence            799999999999999999999999999999987764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=85.86  E-value=24  Score=31.08  Aligned_cols=109  Identities=14%  Similarity=0.189  Sum_probs=65.8

Q ss_pred             CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeEEEEEEccCCCCCCCCCCcc
Q 043460          204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNK  281 (368)
Q Consensus       204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~  281 (368)
                      +|.|||... ...|..+|+.+.+.+ .+.+|..      ...... .+|+|++....  .+.+.  +..++         
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~~------~G~~~~~~~g~l~v~~~~--~~~~~--d~~~g---------   70 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPGP------NGMAFDRPDGRLYVADSG--GIAVV--DPDTG---------   70 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEE-EEESSSE------EEEEEECTTSEEEEEETT--CEEEE--ETTTT---------
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEE-EEecCCC------ceEEEEccCCEEEEEEcC--ceEEE--ecCCC---------
Confidence            699999986 789999999999999 8888862      112233 46777766543  22222  33334         


Q ss_pred             CCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee--------C--CeEEEEECCCCeEEEecc
Q 043460          282 AASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS--------C--DMIYRYHLKTNKMELFST  345 (368)
Q Consensus       282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~--~~~~~ydl~t~~~~~v~~  345 (368)
                            +++........... .    ....=+++.++|+ +|+.+        .  ..+++++.+ ++++.+..
T Consensus        71 ------~~~~~~~~~~~~~~-~----~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~  131 (246)
T PF08450_consen   71 ------KVTVLADLPDGGVP-F----NRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD  131 (246)
T ss_dssp             ------EEEEEEEEETTCSC-T----EEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred             ------cEEEEeeccCCCcc-c----CCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence                  67777766311100 0    1223356677766 55541        1  468999999 77666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04792 tolB translocation protein TolB; Provisional

Probab=85.28  E-value=39  Score=33.03  Aligned_cols=185  Identities=13%  Similarity=0.104  Sum_probs=98.1

Q ss_pred             CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460          114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS  193 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~  193 (368)
                      ...+++++|..|++...+...+.    ......+.|.  +. +++......+...+.+++.+++..+.......      
T Consensus       240 g~~~L~~~dl~tg~~~~lt~~~g----~~~~~~wSPD--G~-~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~------  306 (448)
T PRK04792        240 RKAEIFVQDIYTQVREKVTSFPG----INGAPRFSPD--GK-KLALVLSKDGQPEIYVVDIATKALTRITRHRA------  306 (448)
T ss_pred             CCcEEEEEECCCCCeEEecCCCC----CcCCeeECCC--CC-EEEEEEeCCCCeEEEEEECCCCCeEECccCCC------
Confidence            34579999999998777654331    1123455552  23 23333332245567777888887766542110      


Q ss_pred             eeccce-EEEeCC-eEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCC-eEEEEEECCCeEEEEEE
Q 043460          194 FYVLQS-VYSRGG-ILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKG-ALNYASRNQSTLLIWQL  267 (368)
Q Consensus       194 ~~~~~~-v~~~~G-~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G-~L~~~~~~~~~~~IW~l  267 (368)
                       ....+ ..- +| .+++...   ...|..+|+.+.+.. .+........   ... ...+| .|++........+||.+
T Consensus       307 -~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~---~~~-~SpDG~~l~~~~~~~g~~~I~~~  379 (448)
T PRK04792        307 -IDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNL---GGS-ITPDGRSMIMVNRTNGKFNIARQ  379 (448)
T ss_pred             -CccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCc---Cee-ECCCCCEEEEEEecCCceEEEEE
Confidence             01111 112 44 3544443   357888999888877 4432111110   112 23355 45555555566889998


Q ss_pred             ccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeEEEe
Q 043460          268 DDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKMELF  343 (368)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~~~v  343 (368)
                      +-.++               ....+..   ....        ..+ .+.++|..|++.    ....++.+|.+.+..+++
T Consensus       380 dl~~g---------------~~~~lt~---~~~d--------~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l  432 (448)
T PRK04792        380 DLETG---------------AMQVLTS---TRLD--------ESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL  432 (448)
T ss_pred             ECCCC---------------CeEEccC---CCCC--------CCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence            86543               3333211   1111        112 466777776665    223588889877766666


Q ss_pred             cc
Q 043460          344 ST  345 (368)
Q Consensus       344 ~~  345 (368)
                      ..
T Consensus       433 ~~  434 (448)
T PRK04792        433 PA  434 (448)
T ss_pred             cC
Confidence            54

>PRK00178 tolB translocation protein TolB; Provisional

Probab=84.17  E-value=42  Score=32.43  Aligned_cols=184  Identities=14%  Similarity=0.144  Sum_probs=97.5

Q ss_pred             CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceee
Q 043460          115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSF  194 (368)
Q Consensus       115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~  194 (368)
                      ...++++|..|++.+.+...+.    ......+.|  .++ +++......+...+.+++.+++..+......  .     
T Consensus       222 ~~~l~~~~l~~g~~~~l~~~~g----~~~~~~~Sp--DG~-~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~--~-----  287 (430)
T PRK00178        222 RPRIFVQNLDTGRREQITNFEG----LNGAPAWSP--DGS-KLAFVLSKDGNPEIYVMDLASRQLSRVTNHP--A-----  287 (430)
T ss_pred             CCEEEEEECCCCCEEEccCCCC----CcCCeEECC--CCC-EEEEEEccCCCceEEEEECCCCCeEEcccCC--C-----
Confidence            3579999999998887764431    112344555  123 3332222224457778899888876554211  0     


Q ss_pred             eccce-EEEeCC-eEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCC-eEEEEEECCCeEEEEEEc
Q 043460          195 YVLQS-VYSRGG-ILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKG-ALNYASRNQSTLLIWQLD  268 (368)
Q Consensus       195 ~~~~~-v~~~~G-~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G-~L~~~~~~~~~~~IW~l~  268 (368)
                      ....+ ..- +| .+++...   ...|..+|+.+++.+ .+...... ..  .... ..+| .|++.........||.++
T Consensus       288 ~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~-~~--~~~~-Spdg~~i~~~~~~~~~~~l~~~d  361 (430)
T PRK00178        288 IDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNY-NA--RPRL-SADGKTLVMVHRQDGNFHVAAQD  361 (430)
T ss_pred             CcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCC-cc--ceEE-CCCCCEEEEEEccCCceEEEEEE
Confidence            01111 122 44 4565554   346888899888776 44322111 10  1122 2344 455555444556788777


Q ss_pred             cCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeEEEec
Q 043460          269 DHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKMELFS  344 (368)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~~~v~  344 (368)
                      -.++               ....+..-   ...        ..+ .+.++|..|++.    ....++..+++.+..+.+.
T Consensus       362 l~tg---------------~~~~lt~~---~~~--------~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~  414 (430)
T PRK00178        362 LQRG---------------SVRILTDT---SLD--------ESP-SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP  414 (430)
T ss_pred             CCCC---------------CEEEccCC---CCC--------CCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence            6433               44332211   111        112 456777777765    2346889999877766665


Q ss_pred             c
Q 043460          345 T  345 (368)
Q Consensus       345 ~  345 (368)
                      .
T Consensus       415 ~  415 (430)
T PRK00178        415 T  415 (430)
T ss_pred             C
Confidence            4

>smart00612 Kelch Kelch domain

Probab=83.99  E-value=2.3  Score=26.34  Aligned_cols=20  Identities=15%  Similarity=0.406  Sum_probs=16.7

Q ss_pred             CcEEEEEeCCCCCceecccc
Q 043460          166 DPEVDIFSSENKTWITRKVS  185 (368)
Q Consensus       166 ~~~~~vyss~~~~W~~~~~~  185 (368)
                      ...+++|++++++|+..+.+
T Consensus        14 ~~~v~~yd~~~~~W~~~~~~   33 (47)
T smart00612       14 LKSVEVYDPETNKWTPLPSM   33 (47)
T ss_pred             eeeEEEECCCCCeEccCCCC
Confidence            45789999999999988754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=83.78  E-value=36  Score=31.34  Aligned_cols=234  Identities=15%  Similarity=0.141  Sum_probs=113.1

Q ss_pred             EEecCCcEEEEeecCCCeeEEEEcccCccce---ecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCC
Q 043460           99 LIDCCNGLILLGSSLSKHRYYVCNPLTKQCV---AIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSE  175 (368)
Q Consensus        99 ~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~---~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~  175 (368)
                      +.=|++|..|+..+ +.-.+..|+-..|...   +++.|       .-+-.+.|. ..+--|+....  ....+..|+-.
T Consensus        71 l~WS~dgr~LltsS-~D~si~lwDl~~gs~l~rirf~sp-------v~~~q~hp~-k~n~~va~~~~--~sp~vi~~s~~  139 (405)
T KOG1273|consen   71 LCWSRDGRKLLTSS-RDWSIKLWDLLKGSPLKRIRFDSP-------VWGAQWHPR-KRNKCVATIME--ESPVVIDFSDP  139 (405)
T ss_pred             EEecCCCCEeeeec-CCceeEEEeccCCCceeEEEccCc-------cceeeeccc-cCCeEEEEEec--CCcEEEEecCC
Confidence            34467777777764 5666777776665521   12222       223346663 22222333332  23445555542


Q ss_pred             CCCceeccccCCCCCceeeeccceEEEeCCeEEEEE-eCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEE
Q 043460          176 NKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLT-YRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNY  254 (368)
Q Consensus       176 ~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~-~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~  254 (368)
                      ..  +..+...+.  ........+++-|.|..-..+ ..+.+++||.++-+.....+.-..   ...+......+|+..+
T Consensus       140 ~h--~~Lp~d~d~--dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~---~~IK~I~~s~~g~~li  212 (405)
T KOG1273|consen  140 KH--SVLPKDDDG--DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSV---QAIKQIIVSRKGRFLI  212 (405)
T ss_pred             ce--eeccCCCcc--ccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechh---eeeeEEEEeccCcEEE
Confidence            11  122211110  011122224555455433222 278999999998755423332211   1112244455788888


Q ss_pred             EEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEE
Q 043460          255 ASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYR  332 (368)
Q Consensus       255 ~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~  332 (368)
                      +...+..++.+.+++...    .|+++      +=+..+.++  .+.+..    .+.-.++...|+.|+..  ..+.+|.
T Consensus       213 iNtsDRvIR~ye~~di~~----~~r~~------e~e~~~K~q--DvVNk~----~Wk~ccfs~dgeYv~a~s~~aHaLYI  276 (405)
T KOG1273|consen  213 INTSDRVIRTYEISDIDD----EGRDG------EVEPEHKLQ--DVVNKL----QWKKCCFSGDGEYVCAGSARAHALYI  276 (405)
T ss_pred             EecCCceEEEEehhhhcc----cCccC------CcChhHHHH--HHHhhh----hhhheeecCCccEEEeccccceeEEE
Confidence            888888899888876521    01111      222222222  111111    12334555566666555  4456777


Q ss_pred             EECCCCeEEEecc---CCCcceeeeeeeeeccccCCC
Q 043460          333 YHLKTNKMELFST---RSPLHLYRLALLSSCRANIKS  366 (368)
Q Consensus       333 ydl~t~~~~~v~~---~~~~~~~~~~py~p~~~~~~~  366 (368)
                      ..-.++.+-++-.   |...---.-.|+.|++.++.|
T Consensus       277 WE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~s  313 (405)
T KOG1273|consen  277 WEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIAS  313 (405)
T ss_pred             EecCCcceeeeecCCchhheeecccccceeeeeeccC
Confidence            7777777655543   222111224566666666655

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=82.11  E-value=2  Score=27.35  Aligned_cols=21  Identities=10%  Similarity=0.202  Sum_probs=14.2

Q ss_pred             CeeEEEEcccCccceecCCCC
Q 043460          115 KHRYYVCNPLTKQCVAIPKAR  135 (368)
Q Consensus       115 ~~~~~v~NP~T~~~~~lP~~~  135 (368)
                      ...++++|+.|++|.++|++|
T Consensus        28 ~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen   28 LNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             ---EEEEETTTTEEEE--SS-
T ss_pred             cCCEEEEECCCCEEEECCCCC
Confidence            346899999999999998776

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=81.92  E-value=49  Score=31.58  Aligned_cols=109  Identities=11%  Similarity=-0.005  Sum_probs=58.8

Q ss_pred             CcEEEEeecCCCeeEEEEcccCcccee---cCCCCcCCCCC-CCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCC--
Q 043460          104 NGLILLGSSLSKHRYYVCNPLTKQCVA---IPKAREDVLAS-PPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK--  177 (368)
Q Consensus       104 ~Glll~~~~~~~~~~~v~NP~T~~~~~---lP~~~~~~~~~-~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~--  177 (368)
                      +|.|.+..  ....++-+|+.||+.++   ++......... ...+.-.|... +=+|+...   ..-.+..++.++|  
T Consensus        69 ~~~vy~~~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~v~v~~---~~g~l~ald~~tG~~  142 (394)
T PRK11138         69 YNKVYAAD--RAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA-GGKVYIGS---EKGQVYALNAEDGEV  142 (394)
T ss_pred             CCEEEEEC--CCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE-CCEEEEEc---CCCEEEEEECCCCCC
Confidence            56666654  34577788888888554   22211000000 00000011111 12333322   2345667777776  


Q ss_pred             CceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEE
Q 043460          178 TWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEA  227 (368)
Q Consensus       178 ~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~  227 (368)
                      .|+.....        .....++.. +|.+|.....+.+.+||..+++..
T Consensus       143 ~W~~~~~~--------~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~  183 (394)
T PRK11138        143 AWQTKVAG--------EALSRPVVS-DGLVLVHTSNGMLQALNESDGAVK  183 (394)
T ss_pred             cccccCCC--------ceecCCEEE-CCEEEEECCCCEEEEEEccCCCEe
Confidence            48765411        123456788 999998877889999999887544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=81.84  E-value=33  Score=33.97  Aligned_cols=114  Identities=14%  Similarity=0.181  Sum_probs=65.9

Q ss_pred             cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460          102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT  181 (368)
Q Consensus       102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~  181 (368)
                      ..+|-+|+.+. ...++.||||.  +.+.+-.+...+....+..-|-|. +++=.|+...   +...+.+|+..+.+=+.
T Consensus        59 n~dG~lL~SGS-DD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~-tnnriv~sgA---gDk~i~lfdl~~~~~~~  131 (758)
T KOG1310|consen   59 NADGELLASGS-DDTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPY-TNNRIVLSGA---GDKLIKLFDLDSSKEGG  131 (758)
T ss_pred             cCCCCEEeecC-CcceEEeecch--hcceeeeeecccccceeEEeeecc-CCCeEEEecc---CcceEEEEecccccccc
Confidence            46788888875 77889999999  455554444444444455556674 3333333222   36788899887644322


Q ss_pred             ccccCCCCCcee-eec-----cc-eEEEeCC-eEEEEEe-CCeEEEEEcCCCe
Q 043460          182 RKVSVKPRRPVS-FYV-----LQ-SVYSRGG-ILYNLTY-RSTILRYNIEALS  225 (368)
Q Consensus       182 ~~~~~~~~~p~~-~~~-----~~-~v~~~~G-~lywl~~-~~~il~fD~~~~~  225 (368)
                      .+.....  +.. +..     .+ ++.= +| .++|.+. ++.|.-+|+..-+
T Consensus       132 ~d~~~~~--~~~~~~cht~rVKria~~p-~~PhtfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  132 MDHGMEE--TTRCWSCHTDRVKRIATAP-NGPHTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             cccCccc--hhhhhhhhhhhhhheecCC-CCCceEEEecCCcceeeecccCCc
Confidence            2211110  111 111     12 3333 55 7999887 7889999998643

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=80.62  E-value=52  Score=31.05  Aligned_cols=99  Identities=9%  Similarity=0.066  Sum_probs=57.1

Q ss_pred             CcEEEEeecCCCeeEEEEcccCcccee---cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC--
Q 043460          104 NGLILLGSSLSKHRYYVCNPLTKQCVA---IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT--  178 (368)
Q Consensus       104 ~Glll~~~~~~~~~~~v~NP~T~~~~~---lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~--  178 (368)
                      +|.+.+..  ....++.+|+.||+..+   ++....      .+...+    ++ +|+...   ..-.+..++.++|.  
T Consensus        65 ~~~v~v~~--~~g~v~a~d~~tG~~~W~~~~~~~~~------~~p~v~----~~-~v~v~~---~~g~l~ald~~tG~~~  128 (377)
T TIGR03300        65 GGKVYAAD--ADGTVVALDAETGKRLWRVDLDERLS------GGVGAD----GG-LVFVGT---EKGEVIALDAEDGKEL  128 (377)
T ss_pred             CCEEEEEC--CCCeEEEEEccCCcEeeeecCCCCcc------cceEEc----CC-EEEEEc---CCCEEEEEECCCCcEe
Confidence            56666654  44578888999988654   332110      011111    11 222211   13456677777764  


Q ss_pred             ceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEE
Q 043460          179 WITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEA  227 (368)
Q Consensus       179 W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~  227 (368)
                      |+....        ......++.. +|.+|....++.+.++|..+++..
T Consensus       129 W~~~~~--------~~~~~~p~v~-~~~v~v~~~~g~l~a~d~~tG~~~  168 (377)
T TIGR03300       129 WRAKLS--------SEVLSPPLVA-NGLVVVRTNDGRLTALDAATGERL  168 (377)
T ss_pred             eeeccC--------ceeecCCEEE-CCEEEEECCCCeEEEEEcCCCcee
Confidence            875431        1122345667 899998777889999999876543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=80.56  E-value=45  Score=34.35  Aligned_cols=105  Identities=12%  Similarity=0.227  Sum_probs=60.9

Q ss_pred             eEEee-CCeEEEEEECCCeEEEEEEccC------CCCCCCC-C-----------CccCCCCCCceEEEEEeeeccccccC
Q 043460          244 VIGLC-KGALNYASRNQSTLLIWQLDDH------RHHSNSH-G-----------SNKAASGARSWILKHSICMDEWGNKL  304 (368)
Q Consensus       244 ~l~~~-~G~L~~~~~~~~~~~IW~l~~~------~~~~~~~-~-----------~~~~~~~~~~W~~~~~i~~~~~~~~~  304 (368)
                      .+..+ ||.+...+.++..+.||-....      ++|.+.. |           |---.|.+..|.+..=..++.+....
T Consensus       355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~  434 (893)
T KOG0291|consen  355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE  434 (893)
T ss_pred             eEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC
Confidence            34443 7888888888888999966642      3432211 0           00022233344444333333222221


Q ss_pred             ccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCeEEEeccCCCcc
Q 043460          305 HVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKMELFSTRSPLH  350 (368)
Q Consensus       305 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~~~v~~~~~~~  350 (368)
                      +  ..+.-+++.+.|++|+..  +...+++.+++|+++-.+-.|.+.+
T Consensus       435 p--~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP  480 (893)
T KOG0291|consen  435 P--IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP  480 (893)
T ss_pred             c--eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCc
Confidence            1  234446677779999887  6678999999999987776655533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	368
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 41/246 (16%), Positives = 71/246 (28%), Gaps = 73/246 (29%)

Query: 136 EDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSE----NKTWITRKVSVKPRRP 191
           + ++ S  A       S   ++   L ++ +  V  F  E    N  ++   +  + R+P
Sbjct: 52  DHIIMSKDA------VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 192 VSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGA 251
                     S    +Y    R  +   N          +V  K N       + L + A
Sbjct: 106 ----------SMMTRMYI-EQRDRLYNDN----------QVFAKYNVSRLQPYLKL-RQA 143

Query: 252 LNYASRNQSTLLIWQLDDHRHHSNSH---GSNK---AASGARS------------WI-LK 292
           L      ++ L+                 GS K   A     S            W+ LK
Sbjct: 144 LLELRPAKNVLI-------------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 293 HSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYRYH-LKTNKMELFSTRSPLHL 351
           +    +     L        Y I PN       S ++  R H ++     L  ++     
Sbjct: 191 NCNSPETVLEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---- 242

Query: 352 YRLALL 357
           Y   LL
Sbjct: 243 YENCLL 248

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 68/406 (16%), Positives = 123/406 (30%), Gaps = 121/406 (29%)

Query: 11  ITEILSRL-PVKSVV--GFKIVSKTWNNLISKVCIPRILRAPSPLCGFLFPSTQDSIGYI 67
           + + L  L P K+V+  G     KTW  +   VC      +    C   F      I ++
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTW--VALDVC-----LSYKVQCKMDFK-----IFWL 187

Query: 68  SYSDNEECGNDGEGFAQSLTSLLPSESLPY-ALIDCCNGLILLGSSLSKH-RYYVCNPLT 125
           +      C +        L  LL      + +  D  + + L   S+    R  + +   
Sbjct: 188 NLK---NCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 126 KQCVAIPKAREDVLASPPAL-AF-HPC-------DSSHYKIIRFLRA------RMDPEVD 170
           + C+ +     +V  +  A  AF   C             +  FL A       +D    
Sbjct: 244 ENCLLV---LLNV-QNAKAWNAFNLSCKILLTTRFKQ---VTDFLSAATTTHISLDHHSM 296

Query: 171 IFS-SENKT----WITRKVSVKPRR-----PVSFYVLQSVYSRGGILYNLTYR------- 213
             +  E K+    ++  +    PR      P    ++      G   ++  ++       
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKL 355

Query: 214 STILRYNIEALSEAEI-------------IEVPDK-------NNHPCDSEVI--GLCKGA 251
           +TI+  ++  L  AE                +P         +    D  V+   L K +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 252 LNYASRNQSTLLIW--QLDDHRHHSNS---HGSNKAASGARSWILKHSI--CMDEWG-NK 303
           L      +ST+ I    L+      N    H         RS +  ++I    D      
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALH---------RSIVDHYNIPKTFDSDDLIP 466

Query: 304 LHVFGLTRFYNIHPNSDIIFLGSCDMIYRYHLKT----NKMELFST 345
            ++     FY+         +G       +HLK      +M LF  
Sbjct: 467 PYLDQY--FYS--------HIG-------HHLKNIEHPERMTLFRM 495

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	368
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.25
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.24
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.23
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.23
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.21
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.18
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.16
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.12
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.11
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.09
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.02
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.99
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.93
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.89
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.86
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.73
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.54
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.53
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	98.53
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.39
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.22
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.07
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.76
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.29
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.63
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.45
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	95.31
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	94.87
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	94.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	94.52
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	94.42
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	94.3
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	93.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	93.88
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	93.3
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	92.5
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	92.46
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	92.41
3jro_A	753	Fusion protein of protein transport protein SEC13	92.31
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	92.16
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	91.79
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	91.36
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	91.34
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	90.62
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	90.55
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	90.5
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	90.4
3jrp_A	379	Fusion protein of protein transport protein SEC13	90.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	89.66
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	89.49
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	89.34
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	89.33
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	89.02
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	88.64
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	88.46
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	87.93
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	87.69
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	87.53
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	87.04
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	86.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	86.66
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	86.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	86.12
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	86.1
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	85.33
3jrp_A	379	Fusion protein of protein transport protein SEC13	85.33
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	84.64
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	84.58
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	84.52
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	84.43
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	84.25
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	84.21
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	84.02
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	84.01
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	83.8
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	83.69
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	83.63
3v65_B	386	Low-density lipoprotein receptor-related protein;	82.88
2p4o_A	306	Hypothetical protein; putative lactonase, structur	82.59
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	82.4
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	81.93
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	81.69
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	81.31
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	80.65
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	80.58
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	80.54
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	80.49
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	80.43
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	80.25
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	80.11

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.25  E-value=1.6e-09  Score=99.28  Aligned_cols=183  Identities=11%  Similarity=0.120  Sum_probs=121.2

Q ss_pred             EEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC-----CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460          118 YYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR-----MDPEVDIFSSENKTWITRKVSVKPRRPV  192 (368)
Q Consensus       118 ~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~-----~~~~~~vyss~~~~W~~~~~~~~~~~p~  192 (368)
                      ++++||.|++|..+|+++....  .++.+..     +-+|+.++...     ....+++|+..+++|+.....+.     
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~--~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-----  147 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARC--LFGLGEV-----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI-----  147 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBC--SCEEEEE-----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS-----
T ss_pred             EEEEeCCCCcEEECCCCCcccc--ccceEEE-----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC-----
Confidence            8899999999999998774332  2233221     12455555432     23569999999999999874322     


Q ss_pred             eeeccceEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEE-eCCCCCCCCCCceeEEeeCCeEEEEEE-CCC--e
Q 043460          193 SFYVLQSVYSRGGILYNLTY-------RSTILRYNIEALSEAEII-EVPDKNNHPCDSEVIGLCKGALNYASR-NQS--T  261 (368)
Q Consensus       193 ~~~~~~~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~-~lP~~~~~~~~~~~l~~~~G~L~~~~~-~~~--~  261 (368)
                      ......++.+ +|.||.+++       ...+.+||+.+.+|+ .+ ++|....    ...++..+|+|++++. +..  .
T Consensus       148 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~  221 (318)
T 2woz_A          148 KVYGHNVISH-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK-DLAPMKTPRS----MFGVAIHKGKIVIAGGVTEDGLS  221 (318)
T ss_dssp             CEESCEEEEE-TTEEEEECCEESSSCBCCCEEEEETTTTEEE-EECCCSSCCB----SCEEEEETTEEEEEEEEETTEEE
T ss_pred             cccccEEEEE-CCEEEEEcCCCCCCCccceEEEEcCCCCEEE-ECCCCCCCcc----cceEEEECCEEEEEcCcCCCCcc
Confidence            2233456778 999999986       246999999999999 54 4554332    2356678999999987 222  3


Q ss_pred             EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-e--------------
Q 043460          262 LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-S--------------  326 (368)
Q Consensus       262 ~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~--------------  326 (368)
                      -.+|.++-.++               +|+.+..++.....        .. ..+. + +.||+. .              
T Consensus       222 ~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~-~-~~i~v~GG~~~~~~~~~~~~~~  275 (318)
T 2woz_A          222 ASVEAFDLKTN---------------KWEVMTEFPQERSS--------IS-LVSL-A-GSLYAIGGFAMIQLESKEFAPT  275 (318)
T ss_dssp             EEEEEEETTTC---------------CEEECCCCSSCCBS--------CE-EEEE-T-TEEEEECCBCCBC----CCBCC
T ss_pred             ceEEEEECCCC---------------eEEECCCCCCcccc--------eE-EEEE-C-CEEEEECCeeccCCCCceeccc
Confidence            46788877666               89998766532111        11 1122 2 344444 1              


Q ss_pred             -CCeEEEEECCCCeEEEec
Q 043460          327 -CDMIYRYHLKTNKMELFS  344 (368)
Q Consensus       327 -~~~~~~ydl~t~~~~~v~  344 (368)
                       ...++.||+++++|+++.
T Consensus       276 ~~~~v~~yd~~~~~W~~~~  294 (318)
T 2woz_A          276 EVNDIWKYEDDKKEWAGML  294 (318)
T ss_dssp             BCCCEEEEETTTTEEEEEE
T ss_pred             eeeeEEEEeCCCCEehhhc
Confidence             256999999999999983

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.24  E-value=7.6e-10  Score=100.79  Aligned_cols=199  Identities=10%  Similarity=0.056  Sum_probs=129.3

Q ss_pred             CCcEEEEeec---CCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC----CCcEEEEEeCC
Q 043460          103 CNGLILLGSS---LSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR----MDPEVDIFSSE  175 (368)
Q Consensus       103 ~~Glll~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~----~~~~~~vyss~  175 (368)
                      .+|.|++...   .....+.++||.|++|..+|+++.....  ++....     +-+++.++...    ....+++|+..
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~~d~~  126 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS--LAACAA-----EGKIYTSGGSEVGNSALYLFECYDTR  126 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS--CEEEEE-----TTEEEEECCBBTTBSCCCCEEEEETT
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc--eeEEEE-----CCEEEEECCCCCCCcEeeeEEEEeCC
Confidence            3555544432   1346789999999999999887643321  222211     12455555432    34579999999


Q ss_pred             CCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe----------CCeEEEEEcCCCeEEEEE-eCCCCCCCCCCcee
Q 043460          176 NKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY----------RSTILRYNIEALSEAEII-EVPDKNNHPCDSEV  244 (368)
Q Consensus       176 ~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~----------~~~il~fD~~~~~~~~~~-~lP~~~~~~~~~~~  244 (368)
                      +++|+.....+.     ......++.+ +|.+|.+++          ...+.+||+.+.+|+ .+ ++|....    ...
T Consensus       127 ~~~W~~~~~~p~-----~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~----~~~  195 (306)
T 3ii7_A          127 TESWHTKPSMLT-----QRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT-ELCPMIEARK----NHG  195 (306)
T ss_dssp             TTEEEEECCCSS-----CCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEE-EECCCSSCCB----SCE
T ss_pred             CCceEeCCCCcC-----CcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEE-ECCCccchhh----cce
Confidence            999999864322     2233446788 999999986          245899999999999 55 4554332    336


Q ss_pred             EEeeCCeEEEEEEC-CC--eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCE
Q 043460          245 IGLCKGALNYASRN-QS--TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDI  321 (368)
Q Consensus       245 l~~~~G~L~~~~~~-~~--~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (368)
                      ++..+|+|++++.. ..  .-.+|.++-..+               +|+.+..++.....        .. ..+.  ++.
T Consensus       196 ~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~  249 (306)
T 3ii7_A          196 LVFVKDKIFAVGGQNGLGGLDNVEYYDIKLN---------------EWKMVSPMPWKGVT--------VK-CAAV--GSI  249 (306)
T ss_dssp             EEEETTEEEEECCEETTEEBCCEEEEETTTT---------------EEEECCCCSCCBSC--------CE-EEEE--TTE
T ss_pred             EEEECCEEEEEeCCCCCCCCceEEEeeCCCC---------------cEEECCCCCCCccc--------ee-EEEE--CCE
Confidence            67779999999762 21  235777777656               89998765532211        11 1222  344


Q ss_pred             EEEee-------CCeEEEEECCCCeEEEecc
Q 043460          322 IFLGS-------CDMIYRYHLKTNKMELFST  345 (368)
Q Consensus       322 v~~~~-------~~~~~~ydl~t~~~~~v~~  345 (368)
                      ||+..       ...+..||+++++|+.+..
T Consensus       250 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~  280 (306)
T 3ii7_A          250 VYVLAGFQGVGRLGHILEYNTETDKWVANSK  280 (306)
T ss_dssp             EEEEECBCSSSBCCEEEEEETTTTEEEEEEE
T ss_pred             EEEEeCcCCCeeeeeEEEEcCCCCeEEeCCC
Confidence            55542       2579999999999999876

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.23  E-value=1.3e-09  Score=98.96  Aligned_cols=186  Identities=13%  Similarity=0.143  Sum_probs=122.7

Q ss_pred             eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460          116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRRPV  192 (368)
Q Consensus       116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~p~  192 (368)
                      ..++++||.|++|..+|+++.....  ++.+.-     +-+++.++...   ....+++|+..+++|+.......     
T Consensus        77 ~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-----  144 (302)
T 2xn4_A           77 RTVDSYDPVKDQWTSVANMRDRRST--LGAAVL-----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT-----  144 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBS--CEEEEE-----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS-----
T ss_pred             cceEEECCCCCceeeCCCCCccccc--eEEEEE-----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC-----
Confidence            5689999999999999987743322  222211     11455555433   23479999999999999874322     


Q ss_pred             eeeccceEEEeCCeEEEEEe--------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC-C--e
Q 043460          193 SFYVLQSVYSRGGILYNLTY--------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ-S--T  261 (368)
Q Consensus       193 ~~~~~~~v~~~~G~lywl~~--------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~-~--~  261 (368)
                      ......++.+ +|.+|.+++        ...+.+||+.+.+|+..-++|....    ...++..+|+|+++.... .  .
T Consensus       145 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~  219 (302)
T 2xn4_A          145 RRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS----GAGVGVLNNLLYAVGGHDGPLVR  219 (302)
T ss_dssp             CCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB----SCEEEEETTEEEEECCBSSSSBC
T ss_pred             cccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc----cccEEEECCEEEEECCCCCCccc
Confidence            1123446778 999999976        2469999999999993334554332    236677899999998732 1  2


Q ss_pred             EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEEEE
Q 043460          262 LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYRYH  334 (368)
Q Consensus       262 ~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~yd  334 (368)
                      -.+|.++-..+               .|+.+..++.....        .. ..+.  ++.||+..       ...+.+||
T Consensus       220 ~~~~~yd~~~~---------------~W~~~~~~~~~r~~--------~~-~~~~--~~~i~v~GG~~~~~~~~~v~~yd  273 (302)
T 2xn4_A          220 KSVEVYDPTTN---------------AWRQVADMNMCRRN--------AG-VCAV--NGLLYVVGGDDGSCNLASVEYYN  273 (302)
T ss_dssp             CCEEEEETTTT---------------EEEEECCCSSCCBS--------CE-EEEE--TTEEEEECCBCSSSBCCCEEEEE
T ss_pred             ceEEEEeCCCC---------------CEeeCCCCCCcccc--------Ce-EEEE--CCEEEEECCcCCCcccccEEEEc
Confidence            36788777656               89998765532111        11 1222  34455541       24699999


Q ss_pred             CCCCeEEEec
Q 043460          335 LKTNKMELFS  344 (368)
Q Consensus       335 l~t~~~~~v~  344 (368)
                      +++++|+.+.
T Consensus       274 ~~~~~W~~~~  283 (302)
T 2xn4_A          274 PTTDKWTVVS  283 (302)
T ss_dssp             TTTTEEEECS
T ss_pred             CCCCeEEECC
Confidence            9999999997

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.23  E-value=2.1e-09  Score=97.56  Aligned_cols=188  Identities=8%  Similarity=0.017  Sum_probs=124.1

Q ss_pred             CeeEEEEcccCcc---ceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCC
Q 043460          115 KHRYYVCNPLTKQ---CVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKP  188 (368)
Q Consensus       115 ~~~~~v~NP~T~~---~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~  188 (368)
                      ...++++||.|++   |..+|+++....  .++.+..     +-+++.++...   ....+++|+..+++|+..+..+. 
T Consensus        77 ~~~~~~~d~~~~~~~~W~~~~~~p~~r~--~~~~~~~-----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-  148 (301)
T 2vpj_A           77 LSSVECLDYTADEDGVWYSVAPMNVRRG--LAGATTL-----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-  148 (301)
T ss_dssp             CCCEEEEETTCCTTCCCEEECCCSSCCB--SCEEEEE-----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-
T ss_pred             CceEEEEECCCCCCCeeEECCCCCCCcc--ceeEEEE-----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-
Confidence            3568999999999   999988774332  2222221     12455555433   24579999999999999874322 


Q ss_pred             CCceeeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC-C-
Q 043460          189 RRPVSFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ-S-  260 (368)
Q Consensus       189 ~~p~~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~-~-  260 (368)
                          ......++.+ +|.+|.+++      ...+.+||+.+.+|+..-++|....    ...++..+++|+++.... . 
T Consensus       149 ----~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~----~~~~~~~~~~i~v~GG~~~~~  219 (301)
T 2vpj_A          149 ----AREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS----GAGVALLNDHIYVVGGFDGTA  219 (301)
T ss_dssp             ----CCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB----SCEEEEETTEEEEECCBCSSS
T ss_pred             ----CcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc----cceEEEECCEEEEEeCCCCCc
Confidence                1123446788 999999986      3679999999999993334554332    335667799999998732 1 


Q ss_pred             -eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeC-------CeEEE
Q 043460          261 -TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSC-------DMIYR  332 (368)
Q Consensus       261 -~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~  332 (368)
                       .-.+|.++-.++               +|+.+..++.....        .. ..+. + +.||+..+       ..+..
T Consensus       220 ~~~~v~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~-~-~~i~v~GG~~~~~~~~~v~~  273 (301)
T 2vpj_A          220 HLSSVEAYNIRTD---------------SWTTVTSMTTPRCY--------VG-ATVL-R-GRLYAIAGYDGNSLLSSIEC  273 (301)
T ss_dssp             BCCCEEEEETTTT---------------EEEEECCCSSCCBS--------CE-EEEE-T-TEEEEECCBCSSSBEEEEEE
T ss_pred             ccceEEEEeCCCC---------------cEEECCCCCCcccc--------ee-EEEE-C-CEEEEEcCcCCCcccccEEE
Confidence             346777776656               89998765532211        11 1222 3 44555421       46899


Q ss_pred             EECCCCeEEEecc
Q 043460          333 YHLKTNKMELFST  345 (368)
Q Consensus       333 ydl~t~~~~~v~~  345 (368)
                      ||+++++|+.+..
T Consensus       274 yd~~~~~W~~~~~  286 (301)
T 2vpj_A          274 YDPIIDSWEVVTS  286 (301)
T ss_dssp             EETTTTEEEEEEE
T ss_pred             EcCCCCeEEEcCC
Confidence            9999999999876

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.21  E-value=2.7e-09  Score=97.67  Aligned_cols=186  Identities=10%  Similarity=0.041  Sum_probs=122.4

Q ss_pred             eEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC------CCcEEEEEeCCCCCceeccccCCCCC
Q 043460          117 RYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR------MDPEVDIFSSENKTWITRKVSVKPRR  190 (368)
Q Consensus       117 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~------~~~~~~vyss~~~~W~~~~~~~~~~~  190 (368)
                      .++++||.|++|..+|+++.....  ++.+..     +-+|+.++...      ....+++|+..+++|+.....+.   
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~-----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~---  137 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPSPRCL--FGLGEA-----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY---  137 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSSCEES--CEEEEE-----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS---
T ss_pred             ceEEecCCCCeEEECCCCCcchhc--eeEEEE-----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC---
Confidence            488999999999999987743321  222211     11455554421      34579999999999999874322   


Q ss_pred             ceeeeccceEEEeCCeEEEEEeC-------CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC-CC--
Q 043460          191 PVSFYVLQSVYSRGGILYNLTYR-------STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN-QS--  260 (368)
Q Consensus       191 p~~~~~~~~v~~~~G~lywl~~~-------~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~-~~--  260 (368)
                        ......++.+ +|.||.+++.       ..+.+||+.+.+|+..-++|....    ...++..+|+|++++.. ..  
T Consensus       138 --~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~  210 (315)
T 4asc_A          138 --VVYGHTVLSH-MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARS----LFGATVHDGRIIVAAGVTDTGL  210 (315)
T ss_dssp             --CCBSCEEEEE-TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCB----SCEEEEETTEEEEEEEECSSSE
T ss_pred             --cccceeEEEE-CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchh----ceEEEEECCEEEEEeccCCCCc
Confidence              2233446778 9999999872       579999999999993334554322    33566789999999872 22  


Q ss_pred             eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-e-------------
Q 043460          261 TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-S-------------  326 (368)
Q Consensus       261 ~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~-------------  326 (368)
                      .-.+|+++-.++               +|+.+..++.+...        .. ..+.  ++.||+. .             
T Consensus       211 ~~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~l~v~GG~~~~~~~~~~~~~  264 (315)
T 4asc_A          211 TSSAEVYSITDN---------------KWAPFEAFPQERSS--------LS-LVSL--VGTLYAIGGFATLETESGELVP  264 (315)
T ss_dssp             EEEEEEEETTTT---------------EEEEECCCSSCCBS--------CE-EEEE--TTEEEEEEEEEEEECTTSCEEE
T ss_pred             cceEEEEECCCC---------------eEEECCCCCCcccc--------ee-EEEE--CCEEEEECCccccCcCCccccc
Confidence            347888887666               89998765522211        11 1122  2344443 1             


Q ss_pred             --CCeEEEEECCCCeEEEecc
Q 043460          327 --CDMIYRYHLKTNKMELFST  345 (368)
Q Consensus       327 --~~~~~~ydl~t~~~~~v~~  345 (368)
                        ...+.+||+++++|+++..
T Consensus       265 ~~~~~v~~yd~~~~~W~~~~~  285 (315)
T 4asc_A          265 TELNDIWRYNEEEKKWEGVLR  285 (315)
T ss_dssp             EEEEEEEEEETTTTEEEEEES
T ss_pred             cccCcEEEecCCCChhhhhcc
Confidence              1358999999999999854

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.18  E-value=3.9e-09  Score=96.32  Aligned_cols=187  Identities=11%  Similarity=0.067  Sum_probs=123.2

Q ss_pred             eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460          116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRRPV  192 (368)
Q Consensus       116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~p~  192 (368)
                      ..++++||.|++|..+|+++....  .++.+.-     +-+|+.++...   ....+++|+..+++|+.....+.     
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~--~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-----  157 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRN--RIGVGVI-----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT-----  157 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCB--TCEEEEE-----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-----
T ss_pred             ceEEEECCCCCeEeECCCCCcCcc--ccEEEEE-----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCc-----
Confidence            468999999999999998774332  1222211     11455554432   24579999999999999874322     


Q ss_pred             eeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC---CeEE
Q 043460          193 SFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ---STLL  263 (368)
Q Consensus       193 ~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~~  263 (368)
                      ......++.+ +|.||.+++      ...+..||+.+.+|+..-++|....    ...++..+++|+++....   ..-.
T Consensus       158 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~~  232 (308)
T 1zgk_A          158 RRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS----GAGVCVLHNCIYAAGGYDGQDQLNS  232 (308)
T ss_dssp             CCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB----SCEEEEETTEEEEECCBCSSSBCCC
T ss_pred             cccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc----cceEEEECCEEEEEeCCCCCCccce
Confidence            2123446888 999999986      3579999999999993334444322    235667799999998732   2346


Q ss_pred             EEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-------eCCeEEEEECC
Q 043460          264 IWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-------SCDMIYRYHLK  336 (368)
Q Consensus       264 IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------~~~~~~~ydl~  336 (368)
                      +|+++-..+               +|+.+..++.....        .. ..+.  ++.||+.       ....+..||++
T Consensus       233 v~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~  286 (308)
T 1zgk_A          233 VERYDVETE---------------TWTFVAPMKHRRSA--------LG-ITVH--QGRIYVLGGYDGHTFLDSVECYDPD  286 (308)
T ss_dssp             EEEEETTTT---------------EEEECCCCSSCCBS--------CE-EEEE--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             EEEEeCCCC---------------cEEECCCCCCCccc--------eE-EEEE--CCEEEEEcCcCCCcccceEEEEcCC
Confidence            777777656               89998755522211        11 1122  3445554       13579999999


Q ss_pred             CCeEEEecc
Q 043460          337 TNKMELFST  345 (368)
Q Consensus       337 t~~~~~v~~  345 (368)
                      +++|+++..
T Consensus       287 ~~~W~~~~~  295 (308)
T 1zgk_A          287 TDTWSEVTR  295 (308)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEeecCC
Confidence            999999876

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.16  E-value=8.9e-09  Score=93.66  Aligned_cols=188  Identities=13%  Similarity=0.075  Sum_probs=124.3

Q ss_pred             CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC--CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460          115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR--MDPEVDIFSSENKTWITRKVSVKPRRPV  192 (368)
Q Consensus       115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~--~~~~~~vyss~~~~W~~~~~~~~~~~p~  192 (368)
                      ...+.++||.+++|..+++++.....  ++.+..     +-+|+.++...  ....+++|+..+++|+.....+.     
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~-----~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~-----   90 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRD--AACVFW-----DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT-----   90 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBS--CEEEEE-----TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS-----
T ss_pred             CceEEEecCCCCCEecCCCCCcccce--eEEEEE-----CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc-----
Confidence            45789999999999999887743322  222211     11355554432  34679999999999999874322     


Q ss_pred             eeeccceEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC---CC--
Q 043460          193 SFYVLQSVYSRGGILYNLTY-------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN---QS--  260 (368)
Q Consensus       193 ~~~~~~~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~---~~--  260 (368)
                      ......++.+ +|.||.+++       ...+.+||+.+.+|+..-++|....    ...++..+|+|+++...   ..  
T Consensus        91 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~  165 (306)
T 3ii7_A           91 PRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC----SHGMVEANGLIYVCGGSLGNNVSG  165 (306)
T ss_dssp             CCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB----SCEEEEETTEEEEECCEESCTTTC
T ss_pred             cccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc----eeEEEEECCEEEEECCCCCCCCcc
Confidence            1123446788 999999986       2569999999999993334554432    33566789999999861   11  


Q ss_pred             --eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-------eCCeEE
Q 043460          261 --TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-------SCDMIY  331 (368)
Q Consensus       261 --~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------~~~~~~  331 (368)
                        .-.+|.++-..+               +|+.+..++.....        .. ..+.  ++.||+.       ....+.
T Consensus       166 ~~~~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~i~v~GG~~~~~~~~~~~  219 (306)
T 3ii7_A          166 RVLNSCEVYDPATE---------------TWTELCPMIEARKN--------HG-LVFV--KDKIFAVGGQNGLGGLDNVE  219 (306)
T ss_dssp             EECCCEEEEETTTT---------------EEEEECCCSSCCBS--------CE-EEEE--TTEEEEECCEETTEEBCCEE
T ss_pred             cccceEEEeCCCCC---------------eEEECCCccchhhc--------ce-EEEE--CCEEEEEeCCCCCCCCceEE
Confidence              346777777666               89998755432111        11 1222  3445554       135799


Q ss_pred             EEECCCCeEEEecc
Q 043460          332 RYHLKTNKMELFST  345 (368)
Q Consensus       332 ~ydl~t~~~~~v~~  345 (368)
                      +||+++++|+.+..
T Consensus       220 ~yd~~~~~W~~~~~  233 (306)
T 3ii7_A          220 YYDIKLNEWKMVSP  233 (306)
T ss_dssp             EEETTTTEEEECCC
T ss_pred             EeeCCCCcEEECCC
Confidence            99999999999976

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.12  E-value=6e-09  Score=95.04  Aligned_cols=189  Identities=10%  Similarity=0.055  Sum_probs=123.6

Q ss_pred             CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEe----C---CCcEEEEEeCCCCCceeccccC
Q 043460          114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRA----R---MDPEVDIFSSENKTWITRKVSV  186 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~----~---~~~~~~vyss~~~~W~~~~~~~  186 (368)
                      ....+.++||.|++|..+|+++.....  ++....     +-+|+.++..    .   ....+++|+..+++|+....+.
T Consensus        37 ~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~-----~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p  109 (308)
T 1zgk_A           37 SLSYLEAYNPSNGTWLRLADLQVPRSG--LAGCVV-----GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS  109 (308)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSCCBS--CEEEEE-----TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCS
T ss_pred             CcceEEEEcCCCCeEeECCCCCccccc--ceEEEE-----CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCC
Confidence            345789999999999999877643321  222211     1245544432    1   2356899999999999987432


Q ss_pred             CCCCceeeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC-
Q 043460          187 KPRRPVSFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ-  259 (368)
Q Consensus       187 ~~~~p~~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~-  259 (368)
                      .     ......++.+ +|.||.+++      ...+.+||+.+.+|+..-++|....    ...++..+++|+++.... 
T Consensus       110 ~-----~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~  179 (308)
T 1zgk_A          110 V-----PRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRI----GVGVAVLNRLLYAVGGFDG  179 (308)
T ss_dssp             S-----CCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCB----SCEEEEETTEEEEECCBCS
T ss_pred             c-----CccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcccc----ceEEEEECCEEEEEeCCCC
Confidence            2     1123446788 999999976      3579999999999993334554432    235567799999998722 


Q ss_pred             --CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeE
Q 043460          260 --STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMI  330 (368)
Q Consensus       260 --~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~  330 (368)
                        ..-.+|.++-..+               +|+.+..++.....        .. ..+.  ++.||+..       ...+
T Consensus       180 ~~~~~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~iyv~GG~~~~~~~~~v  233 (308)
T 1zgk_A          180 TNRLNSAECYYPERN---------------EWRMITAMNTIRSG--------AG-VCVL--HNCIYAAGGYDGQDQLNSV  233 (308)
T ss_dssp             SCBCCCEEEEETTTT---------------EEEECCCCSSCCBS--------CE-EEEE--TTEEEEECCBCSSSBCCCE
T ss_pred             CCcCceEEEEeCCCC---------------eEeeCCCCCCcccc--------ce-EEEE--CCEEEEEeCCCCCCccceE
Confidence              1235677776656               89988665532111        11 1222  34455552       3679


Q ss_pred             EEEECCCCeEEEecc
Q 043460          331 YRYHLKTNKMELFST  345 (368)
Q Consensus       331 ~~ydl~t~~~~~v~~  345 (368)
                      .+||+++++|+++..
T Consensus       234 ~~yd~~~~~W~~~~~  248 (308)
T 1zgk_A          234 ERYDVETETWTFVAP  248 (308)
T ss_dssp             EEEETTTTEEEECCC
T ss_pred             EEEeCCCCcEEECCC
Confidence            999999999999876

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.11  E-value=2.3e-08  Score=90.56  Aligned_cols=188  Identities=11%  Similarity=0.109  Sum_probs=124.0

Q ss_pred             CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCC---ceeccccCCC
Q 043460          115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKT---WITRKVSVKP  188 (368)
Q Consensus       115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~---W~~~~~~~~~  188 (368)
                      ...++++||.|++|..+|+++....  .++....     +-+|+.++...   ....+++|+..+++   |+.....+. 
T Consensus        30 ~~~~~~~d~~~~~W~~~~~~p~~r~--~~~~~~~-----~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~-  101 (301)
T 2vpj_A           30 IDVVEKYDPKTQEWSFLPSITRKRR--YVASVSL-----HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV-  101 (301)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCB--SCEEEEE-----TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS-
T ss_pred             eeEEEEEcCCCCeEEeCCCCChhhc--cccEEEE-----CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC-
Confidence            3478999999999999987764222  1222211     12455555432   24579999999999   999864322 


Q ss_pred             CCceeeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC---
Q 043460          189 RRPVSFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ---  259 (368)
Q Consensus       189 ~~p~~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~---  259 (368)
                          ......++.+ +|.+|.+++      ...+.+||+.+.+|+..-++|....    ...++..+|+|++++...   
T Consensus       102 ----~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~  172 (301)
T 2vpj_A          102 ----RRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTARE----GAGLVVASGVIYCLGGYDGLN  172 (301)
T ss_dssp             ----CCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCB----SCEEEEETTEEEEECCBCSSC
T ss_pred             ----CccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcc----cceEEEECCEEEEECCCCCCc
Confidence                2133446788 999999986      3579999999999994445664432    235667799999998722   


Q ss_pred             CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEE
Q 043460          260 STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYR  332 (368)
Q Consensus       260 ~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~  332 (368)
                      ..-.+|.++-..+               .|+.+..++.+...        .. ....  ++.||+..       ...+..
T Consensus       173 ~~~~~~~~d~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~i~v~GG~~~~~~~~~v~~  226 (301)
T 2vpj_A          173 ILNSVEKYDPHTG---------------HWTNVTPMATKRSG--------AG-VALL--NDHIYVVGGFDGTAHLSSVEA  226 (301)
T ss_dssp             BCCCEEEEETTTT---------------EEEEECCCSSCCBS--------CE-EEEE--TTEEEEECCBCSSSBCCCEEE
T ss_pred             ccceEEEEeCCCC---------------cEEeCCCCCccccc--------ce-EEEE--CCEEEEEeCCCCCcccceEEE
Confidence            1345777776656               89998655422111        11 1222  34455541       357999


Q ss_pred             EECCCCeEEEecc
Q 043460          333 YHLKTNKMELFST  345 (368)
Q Consensus       333 ydl~t~~~~~v~~  345 (368)
                      ||+++++|+.+..
T Consensus       227 yd~~~~~W~~~~~  239 (301)
T 2vpj_A          227 YNIRTDSWTTVTS  239 (301)
T ss_dssp             EETTTTEEEEECC
T ss_pred             EeCCCCcEEECCC
Confidence            9999999999976

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.09  E-value=2.5e-08  Score=90.44  Aligned_cols=187  Identities=11%  Similarity=0.129  Sum_probs=122.7

Q ss_pred             eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460          116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRRPV  192 (368)
Q Consensus       116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~p~  192 (368)
                      ..+.++||.+++|..+++++.....  ++....     +-+|+.++...   ....+++|+..+++|+..+.+..     
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~-----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-----   97 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCR--AGMVYM-----AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD-----   97 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBS--CEEEEE-----TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS-----
T ss_pred             CcEEEEcCcCCcEeEcccCCccccc--ceEEEE-----CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc-----
Confidence            4688999999999999877643321  222211     12455554432   23568999999999999874322     


Q ss_pred             eeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC--CC---e
Q 043460          193 SFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN--QS---T  261 (368)
Q Consensus       193 ~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~--~~---~  261 (368)
                      ......++.+ +|.+|.+++      ...+.+||+.+.+|+..-++|....    ...++..+|+|++++..  ..   .
T Consensus        98 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~~  172 (302)
T 2xn4_A           98 RRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRS----SVGVGVVGGLLYAVGGYDVASRQCL  172 (302)
T ss_dssp             CCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCB----SCEEEEETTEEEEECCEETTTTEEC
T ss_pred             cccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCccc----CceEEEECCEEEEEeCCCCCCCccc
Confidence            1123446788 999999987      1468999999999993334554322    33566789999999762  11   2


Q ss_pred             EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEEEE
Q 043460          262 LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYRYH  334 (368)
Q Consensus       262 ~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~yd  334 (368)
                      -.+|..+-..+               +|+.+..++.....        .. ..+.  ++.||+..       ...+..||
T Consensus       173 ~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~iyv~GG~~~~~~~~~~~~yd  226 (302)
T 2xn4_A          173 STVECYNATTN---------------EWTYIAEMSTRRSG--------AG-VGVL--NNLLYAVGGHDGPLVRKSVEVYD  226 (302)
T ss_dssp             CCEEEEETTTT---------------EEEEECCCSSCCBS--------CE-EEEE--TTEEEEECCBSSSSBCCCEEEEE
T ss_pred             cEEEEEeCCCC---------------cEEECCCCcccccc--------cc-EEEE--CCEEEEECCCCCCcccceEEEEe
Confidence            35777776656               89998765522111        11 1222  34455541       35799999


Q ss_pred             CCCCeEEEecc
Q 043460          335 LKTNKMELFST  345 (368)
Q Consensus       335 l~t~~~~~v~~  345 (368)
                      +++++|+.+..
T Consensus       227 ~~~~~W~~~~~  237 (302)
T 2xn4_A          227 PTTNAWRQVAD  237 (302)
T ss_dssp             TTTTEEEEECC
T ss_pred             CCCCCEeeCCC
Confidence            99999999876

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.02  E-value=4e-08  Score=91.31  Aligned_cols=203  Identities=12%  Similarity=0.085  Sum_probs=123.6

Q ss_pred             CcEEEEeecCCCeeEEEEccc--CccceecCCCC-cCCCCCCCeeEEcCCCCCCeEEEEEEEe-C-------CCcEEEEE
Q 043460          104 NGLILLGSSLSKHRYYVCNPL--TKQCVAIPKAR-EDVLASPPALAFHPCDSSHYKIIRFLRA-R-------MDPEVDIF  172 (368)
Q Consensus       104 ~Glll~~~~~~~~~~~v~NP~--T~~~~~lP~~~-~~~~~~~~~l~~d~~~~~~ykvv~~~~~-~-------~~~~~~vy  172 (368)
                      +|.|.+........++++||.  +++|..+|+++ ....  .++.+...     -+|+.++.. .       ....+++|
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~--~~~~~~~~-----~~lyv~GG~~~~~~~~~~~~~~v~~y   91 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRD--QATSAFID-----GNLYVFGGIGKNSEGLTQVFNDVHKY   91 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCB--SCEEEEET-----TEEEEECCEEECTTSCEEECCCEEEE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCc--cceEEEEC-----CEEEEEcCCCCCCCccceeeccEEEE
Confidence            666655544344579999998  59999998876 3222  12222111     145555443 1       24579999


Q ss_pred             eCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEeC---------------------------------------
Q 043460          173 SSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYR---------------------------------------  213 (368)
Q Consensus       173 ss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~---------------------------------------  213 (368)
                      +..+++|+....+.    |.......++.+ +|.||.+++.                                       
T Consensus        92 d~~~~~W~~~~~~~----p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (357)
T 2uvk_A           92 NPKTNSWVKLMSHA----PMGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFF  166 (357)
T ss_dssp             ETTTTEEEECSCCC----SSCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCC
T ss_pred             eCCCCcEEECCCCC----CcccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCC
Confidence            99999999988543    122223345668 9999999871                                       


Q ss_pred             -CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC--C--CeEEEEEEcc--CCCCCCCCCCccCCCCC
Q 043460          214 -STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN--Q--STLLIWQLDD--HRHHSNSHGSNKAASGA  286 (368)
Q Consensus       214 -~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~--~--~~~~IW~l~~--~~~~~~~~~~~~~~~~~  286 (368)
                       ..+.+||+.+.+|+..-++|.....   ...++..+++|++++..  .  ..-.+|.++-  ...              
T Consensus       167 ~~~v~~yd~~~~~W~~~~~~p~~~~~---~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~--------------  229 (357)
T 2uvk_A          167 NKFLLSFDPSTQQWSYAGESPWYGTA---GAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNL--------------  229 (357)
T ss_dssp             CCEEEEEETTTTEEEEEEECSSCCCB---SCEEEEETTEEEEECCEEETTEECCCEEEEECC---C--------------
T ss_pred             cccEEEEeCCCCcEEECCCCCCCCcc---cccEEEECCEEEEEeeecCCCcccCceEEEEecCCCC--------------
Confidence             5899999999999944456643322   23667789999999762  1  1345666653  345              


Q ss_pred             CceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeC------------------------CeEEEEECCCCeEEE
Q 043460          287 RSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSC------------------------DMIYRYHLKTNKMEL  342 (368)
Q Consensus       287 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------------------------~~~~~ydl~t~~~~~  342 (368)
                       .|+.+..++.+.-..      . .-..+.  ++.||+..+                        ..+.+||+++++|++
T Consensus       230 -~W~~~~~~~~~~~~~------~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~  299 (357)
T 2uvk_A          230 -KWNKLAPVSSPDGVA------G-GFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK  299 (357)
T ss_dssp             -EEEECCCSSTTTCCB------S-CEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEE
T ss_pred             -cEEecCCCCCCcccc------c-ceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceee
Confidence             899987664221110      0 111222  344555521                        258899999999999


Q ss_pred             ecc
Q 043460          343 FST  345 (368)
Q Consensus       343 v~~  345 (368)
                      +..
T Consensus       300 ~~~  302 (357)
T 2uvk_A          300 SGE  302 (357)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            876

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.99  E-value=3.6e-10  Score=74.71  Aligned_cols=39  Identities=26%  Similarity=0.359  Sum_probs=36.9

Q ss_pred             CCCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCch
Q 043460            4 IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI   42 (368)
Q Consensus         4 ~~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f   42 (368)
                      ..||+|++.+||++||+++++++++|||+|+.++.++.|
T Consensus        10 ~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~l   48 (53)
T 1fs1_A           10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (53)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             HHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Confidence            479999999999999999999999999999999998765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.93  E-value=1.4e-07  Score=86.06  Aligned_cols=188  Identities=10%  Similarity=0.078  Sum_probs=117.8

Q ss_pred             eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEe-----C----CCcEEEEEeCCCCCceeccccC
Q 043460          116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRA-----R----MDPEVDIFSSENKTWITRKVSV  186 (368)
Q Consensus       116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~-----~----~~~~~~vyss~~~~W~~~~~~~  186 (368)
                      ..+.++||.|++|.. ++.+.......++.+..     +-+|+.++..     .    ....+++|+..+++|+..+..+
T Consensus        13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p   86 (315)
T 4asc_A           13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK-----ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLP   86 (315)
T ss_dssp             TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT-----TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBS
T ss_pred             CceEEECCCCCeEec-CCCCCCCCccceEEEEE-----CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCC
Confidence            578999999999986 33321111111222211     2234444432     1    1224889999999999886432


Q ss_pred             CCCCceeeeccceEEEeCCeEEEEEe---------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEE
Q 043460          187 KPRRPVSFYVLQSVYSRGGILYNLTY---------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASR  257 (368)
Q Consensus       187 ~~~~p~~~~~~~~v~~~~G~lywl~~---------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~  257 (368)
                      .     .-.....+.+ +|.+|.+++         ...+.+||+.+.+|+..-++|....    ...++..+|+|++++.
T Consensus        87 ~-----~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG  156 (315)
T 4asc_A           87 S-----PRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVY----GHTVLSHMDLVYVIGG  156 (315)
T ss_dssp             S-----CEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCB----SCEEEEETTEEEEECC
T ss_pred             c-----chhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccc----ceeEEEECCEEEEEeC
Confidence            2     2133456888 999999986         1469999999999993334554432    3356678999999987


Q ss_pred             C-CC---eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------
Q 043460          258 N-QS---TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------  326 (368)
Q Consensus       258 ~-~~---~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------  326 (368)
                      . ..   .-.+|.++-.++               +|+.+..++.+...        .. ..+.  ++.||+..       
T Consensus       157 ~~~~~~~~~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~iyv~GG~~~~~~  210 (315)
T 4asc_A          157 KGSDRKCLNKMCVYDPKKF---------------EWKELAPMQTARSL--------FG-ATVH--DGRIIVAAGVTDTGL  210 (315)
T ss_dssp             BCTTSCBCCCEEEEETTTT---------------EEEECCCCSSCCBS--------CE-EEEE--TTEEEEEEEECSSSE
T ss_pred             CCCCCcccceEEEEeCCCC---------------eEEECCCCCCchhc--------eE-EEEE--CCEEEEEeccCCCCc
Confidence            3 21   236788777656               89998765532111        11 1222  34455541       


Q ss_pred             CCeEEEEECCCCeEEEecc
Q 043460          327 CDMIYRYHLKTNKMELFST  345 (368)
Q Consensus       327 ~~~~~~ydl~t~~~~~v~~  345 (368)
                      ...+.+||+++++|+.+..
T Consensus       211 ~~~~~~yd~~~~~W~~~~~  229 (315)
T 4asc_A          211 TSSAEVYSITDNKWAPFEA  229 (315)
T ss_dssp             EEEEEEEETTTTEEEEECC
T ss_pred             cceEEEEECCCCeEEECCC
Confidence            2369999999999999976

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.89  E-value=1.6e-07  Score=85.76  Aligned_cols=187  Identities=12%  Similarity=0.146  Sum_probs=116.0

Q ss_pred             eEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---------CCcEEEEEeCCCCCceeccccCC
Q 043460          117 RYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---------MDPEVDIFSSENKTWITRKVSVK  187 (368)
Q Consensus       117 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---------~~~~~~vyss~~~~W~~~~~~~~  187 (368)
                      ...++||.|++|...|.+.... ...++.+.     .+-+|+.++...         ....+++|+..+++|+..+..+.
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~-r~~~~~~~-----~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~   98 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIP-RNHSSIVT-----QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS   98 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSC-SSEEEEEC-----SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSS
T ss_pred             ceEEECCCCCceecccCCccCC-ccceEEEE-----ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCc
Confidence            5789999999999843221111 11112221     122344444311         12248999999999999864322


Q ss_pred             CCCceeeeccceEEEeCCeEEEEEeC--------CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC-
Q 043460          188 PRRPVSFYVLQSVYSRGGILYNLTYR--------STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN-  258 (368)
Q Consensus       188 ~~~p~~~~~~~~v~~~~G~lywl~~~--------~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~-  258 (368)
                           .-.....+.+ +|.||.+++.        ..+.+||+.+.+|+..-++|....    ...++..+|+|++++.. 
T Consensus        99 -----~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~  168 (318)
T 2woz_A           99 -----ARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY----GHNVISHNGMIYCLGGKT  168 (318)
T ss_dssp             -----CBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEE----SCEEEEETTEEEEECCEE
T ss_pred             -----cccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccc----ccEEEEECCEEEEEcCCC
Confidence                 1123446778 9999999872        468999999999993335554432    22556689999998862 


Q ss_pred             -C--CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CC
Q 043460          259 -Q--STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CD  328 (368)
Q Consensus       259 -~--~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~  328 (368)
                       .  ..-.+|.++-..+               +|+.+..++.....        .. ..+.  ++.||+..       ..
T Consensus       169 ~~~~~~~~~~~yd~~~~---------------~W~~~~~~p~~r~~--------~~-~~~~--~~~iyv~GG~~~~~~~~  222 (318)
T 2woz_A          169 DDKKCTNRVFIYNPKKG---------------DWKDLAPMKTPRSM--------FG-VAIH--KGKIVIAGGVTEDGLSA  222 (318)
T ss_dssp             SSSCBCCCEEEEETTTT---------------EEEEECCCSSCCBS--------CE-EEEE--TTEEEEEEEEETTEEEE
T ss_pred             CCCCccceEEEEcCCCC---------------EEEECCCCCCCccc--------ce-EEEE--CCEEEEEcCcCCCCccc
Confidence             1  1235788877666               89998765422111        11 1222  34455541       24


Q ss_pred             eEEEEECCCCeEEEecc
Q 043460          329 MIYRYHLKTNKMELFST  345 (368)
Q Consensus       329 ~~~~ydl~t~~~~~v~~  345 (368)
                      .+.+||+++++|+++..
T Consensus       223 ~~~~yd~~~~~W~~~~~  239 (318)
T 2woz_A          223 SVEAFDLKTNKWEVMTE  239 (318)
T ss_dssp             EEEEEETTTCCEEECCC
T ss_pred             eEEEEECCCCeEEECCC
Confidence            68899999999999876

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.86  E-value=9.1e-10  Score=98.73  Aligned_cols=44  Identities=23%  Similarity=0.425  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHcCCCchhhH-HHhhhhHHHHhhhcCCchhhhh
Q 043460            3 QIYLSEDLITEILSRLPVKSVV-GFKIVSKTWNNLISKVCIPRIL   46 (368)
Q Consensus         3 ~~~LP~Dll~~IL~rLp~~~l~-r~r~Vck~Wr~li~~~~f~~~~   46 (368)
                      ...||+|+|.+||+|||+++|+ ||++|||+|+.+++++.|.+++
T Consensus        51 ~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~   95 (297)
T 2e31_A           51 LAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK   95 (297)
T ss_dssp             TTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence            4589999999999999999999 9999999999999999997776

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.73  E-value=8.1e-07  Score=82.41  Aligned_cols=190  Identities=12%  Similarity=0.082  Sum_probs=112.7

Q ss_pred             eeEEEEcccCccceecCCCC-cCCCCCCCeeEEcCCCCCCeEEEEEEEeC------------------------------
Q 043460          116 HRYYVCNPLTKQCVAIPKAR-EDVLASPPALAFHPCDSSHYKIIRFLRAR------------------------------  164 (368)
Q Consensus       116 ~~~~v~NP~T~~~~~lP~~~-~~~~~~~~~l~~d~~~~~~ykvv~~~~~~------------------------------  164 (368)
                      ..++++||.|++|..+++++ ...  ..++....     +-+|+.++...                              
T Consensus        86 ~~v~~yd~~~~~W~~~~~~~p~~r--~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (357)
T 2uvk_A           86 NDVHKYNPKTNSWVKLMSHAPMGM--AGHVTFVH-----NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD  158 (357)
T ss_dssp             CCEEEEETTTTEEEECSCCCSSCC--SSEEEEEE-----TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             ccEEEEeCCCCcEEECCCCCCccc--ccceEEEE-----CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcc
Confidence            46899999999999998765 222  12222221     12566665432                              


Q ss_pred             -------CCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-------CCeEEEEEc--CCCeEEE
Q 043460          165 -------MDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-------RSTILRYNI--EALSEAE  228 (368)
Q Consensus       165 -------~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-------~~~il~fD~--~~~~~~~  228 (368)
                             ....+++|+..+++|+.....+.+.    .....++.+ +|.||.+++       ...+..||+  .+.+|+.
T Consensus       159 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~----~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~  233 (357)
T 2uvk_A          159 KKAEDYFFNKFLLSFDPSTQQWSYAGESPWYG----TAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK  233 (357)
T ss_dssp             SCGGGGCCCCEEEEEETTTTEEEEEEECSSCC----CBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEE
T ss_pred             ccccccCCcccEEEEeCCCCcEEECCCCCCCC----cccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEe
Confidence                   1258999999999999986432211    112446778 999999975       346778876  8899993


Q ss_pred             EEeCCCCCCCCCCceeEEeeCCeEEEEEEC--C------------------CeEEEEEEccCCCCCCCCCCccCCCCCCc
Q 043460          229 IIEVPDKNNHPCDSEVIGLCKGALNYASRN--Q------------------STLLIWQLDDHRHHSNSHGSNKAASGARS  288 (368)
Q Consensus       229 ~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~--~------------------~~~~IW~l~~~~~~~~~~~~~~~~~~~~~  288 (368)
                      +-.+|......  ...++..+|+|+++...  .                  ..-.+|+.+-.++               +
T Consensus       234 ~~~~~~~~~~~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~---------------~  296 (357)
T 2uvk_A          234 LAPVSSPDGVA--GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG---------------K  296 (357)
T ss_dssp             CCCSSTTTCCB--SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC------------------
T ss_pred             cCCCCCCcccc--cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC---------------c
Confidence            33444332221  33567889999999862  1                  1135667666556               8


Q ss_pred             eEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------CCeEEEEECCCCeEEEec
Q 043460          289 WILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------CDMIYRYHLKTNKMELFS  344 (368)
Q Consensus       289 W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~~~ydl~t~~~~~v~  344 (368)
                      |+++..++.....        ..  ++..++.++++..       ...++.|+++++||.+.-
T Consensus       297 W~~~~~~p~~r~~--------~~--~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          297 WDKSGELSQGRAY--------GV--SLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             CEEEEECSSCCBS--------SE--EEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             eeeCCCCCCCccc--------ce--eEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            9998776633221        01  1222334333331       246889999999986643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.54  E-value=0.00034  Score=66.32  Aligned_cols=236  Identities=13%  Similarity=0.103  Sum_probs=118.6

Q ss_pred             CCCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCchhhhhcCCCCCce-Eeecc-C-CCC----CCeee-ccC---C
Q 043460            4 IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRILRAPSPLCG-FLFPS-T-QDS----IGYIS-YSD---N   72 (368)
Q Consensus         4 ~~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f~~~~~~~~~~~~-~~~~~-~-~~~----~~~~~-f~~---~   72 (368)
                      ..||+|++..||+.|++++|+++++|||+|+.++.++.+-+.+........ ..... . ...    ..... +..   .
T Consensus        20 ~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~~~~   99 (445)
T 2ovr_B           20 SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRI   99 (445)
T ss_dssp             TSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhhhhh
Confidence            479999999999999999999999999999999998865443311000000 00000 0 000    00000 000   0


Q ss_pred             CCCCCCCCcccccccccCCCCCCCcEEEecCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCC
Q 043460           73 EECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCD  151 (368)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~  151 (368)
                      ...+.... ......+. .+...-...+...+.+|+...  ....+.|||..+++... ++...    .....+.+++  
T Consensus       100 ~~~w~~~~-~~~~~~l~-~h~~~v~~~~~~~g~~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~--  169 (445)
T 2ovr_B          100 DTNWRRGE-LKSPKVLK-GHDDHVITCLQFCGNRIVSGS--DDNTLKVWSAVTGKCLRTLVGHT----GGVWSSQMRD--  169 (445)
T ss_dssp             HHHHHHSC-CCCCEEEE-CSTTSCEEEEEEETTEEEEEE--TTSCEEEEETTTCCEEEECCCCS----SCEEEEEEET--
T ss_pred             hhcccCCC-cceeEEec-ccCCCcEEEEEEcCCEEEEEE--CCCcEEEEECCCCcEEEEEcCCC----CCEEEEEecC--
Confidence            00000000 00000000 001111233444455555554  67789999998887553 32111    1223344442  


Q ss_pred             CCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEE
Q 043460          152 SSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEII  230 (368)
Q Consensus       152 ~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~  230 (368)
                        .  .+....  ....+.+++..++.-...-....       ..-.++.. ++.....+. ++.|..+|+.+.+....+
T Consensus       170 --~--~l~s~~--~dg~i~vwd~~~~~~~~~~~~h~-------~~v~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~  235 (445)
T 2ovr_B          170 --N--IIISGS--TDRTLKVWNAETGECIHTLYGHT-------STVRCMHL-HEKRVVSGSRDATLRVWDIETGQCLHVL  235 (445)
T ss_dssp             --T--EEEEEE--TTSCEEEEETTTTEEEEEECCCS-------SCEEEEEE-ETTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred             --C--EEEEEe--CCCeEEEEECCcCcEEEEECCCC-------CcEEEEEe-cCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence              2  222222  34578889888774322111000       00114555 444333333 788999999987654233


Q ss_pred             eCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEcc
Q 043460          231 EVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDD  269 (368)
Q Consensus       231 ~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~  269 (368)
                      .....      .......+|...++...+..+.+|-+..
T Consensus       236 ~~~~~------~v~~~~~~~~~l~~~~~dg~i~iwd~~~  268 (445)
T 2ovr_B          236 MGHVA------AVRCVQYDGRRVVSGAYDFMVKVWDPET  268 (445)
T ss_dssp             ECCSS------CEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred             cCCcc------cEEEEEECCCEEEEEcCCCEEEEEECCC
Confidence            32211      1122233777777777788899997765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.53  E-value=0.00018  Score=68.43  Aligned_cols=290  Identities=11%  Similarity=0.085  Sum_probs=138.9

Q ss_pred             CCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcC-Cchhhhhc-C-----CCCCceE--eeccCCCCCC----e-eecc
Q 043460            5 YLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISK-VCIPRILR-A-----PSPLCGF--LFPSTQDSIG----Y-ISYS   70 (368)
Q Consensus         5 ~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~-~~f~~~~~-~-----~~~~~~~--~~~~~~~~~~----~-~~f~   70 (368)
                      .||+|++.+||+.||+++|++++.|||+|+.++.+ +.+-+++. +     +......  -.........    . ..+.
T Consensus        17 ~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (464)
T 3v7d_B           17 SLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFL   96 (464)
T ss_dssp             HSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred             HCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcccchhhHHHHH
Confidence            59999999999999999999999999999999998 54322220 0     1000000  0000000000    0 0000


Q ss_pred             CC---CCCCCCCCcccccccccCCCCCCCcEEEecCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeE
Q 043460           71 DN---EECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALA  146 (368)
Q Consensus        71 ~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~  146 (368)
                      ..   ...+...........+. .....-...+...+++|+...  ....+.+||..+++... +...    ......+.
T Consensus        97 ~~~~~~~~w~~~~~~~~~~~l~-~h~~~v~~~~~~~~~~l~sgs--~dg~i~vwd~~~~~~~~~~~~h----~~~V~~l~  169 (464)
T 3v7d_B           97 ENIFILKNWYNPKFVPQRTTLR-GHMTSVITCLQFEDNYVITGA--DDKMIRVYDSINKKFLLQLSGH----DGGVWALK  169 (464)
T ss_dssp             HHHHHHHHHHCTTCCCEEEEEE-CCSSSCEEEEEEETTEEEEEE--TTSCEEEEETTTTEEEEEECCC----SSCEEEEE
T ss_pred             HhhhhHhhhcCCCcCcceEEEc-CCCCCcEEEEEECCCEEEEEc--CCCcEEEEECCCCcEEEEEeCC----CcCEEEEE
Confidence            00   00000000000001111 101111233444456655554  67789999988877543 2211    12334455


Q ss_pred             EcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEe---CCeEEEEEe-CCeEEEEEcC
Q 043460          147 FHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSR---GGILYNLTY-RSTILRYNIE  222 (368)
Q Consensus       147 ~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~---~G~lywl~~-~~~il~fD~~  222 (368)
                      +.+.   . .++...   ....+.+++.+++.-...-.....  +.     .++.+.   +|.....+. ++.|..+|+.
T Consensus       170 ~~~~---~-~l~s~s---~dg~i~vwd~~~~~~~~~~~~h~~--~v-----~~l~~~~~~~~~~l~s~s~d~~i~vwd~~  235 (464)
T 3v7d_B          170 YAHG---G-ILVSGS---TDRTVRVWDIKKGCCTHVFEGHNS--TV-----RCLDIVEYKNIKYIVTGSRDNTLHVWKLP  235 (464)
T ss_dssp             ECST---T-EEEEEE---TTSCEEEEETTTTEEEEEECCCSS--CE-----EEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred             EcCC---C-EEEEEe---CCCCEEEEECCCCcEEEEECCCCC--cc-----EEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence            6552   2 333332   356788999887753222110000  01     012210   334333333 6788889988


Q ss_pred             CCeEEEEEeCC----------CCC-------CCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCC
Q 043460          223 ALSEAEIIEVP----------DKN-------NHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASG  285 (368)
Q Consensus       223 ~~~~~~~~~lP----------~~~-------~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~  285 (368)
                      +.+.......+          ...       ............+|.+.++...+..+.+|-+...               
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~---------------  300 (464)
T 3v7d_B          236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM---------------  300 (464)
T ss_dssp             CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT---------------
T ss_pred             CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC---------------
Confidence            76532111000          000       0000011122345666677777788999987642               


Q ss_pred             CCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEE
Q 043460          286 ARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMEL  342 (368)
Q Consensus       286 ~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~  342 (368)
                          ..+..+....        ..+.-+.+.+++..++.. .+..+..||+++++...
T Consensus       301 ----~~~~~~~~~~--------~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  346 (464)
T 3v7d_B          301 ----KCLYILSGHT--------DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY  346 (464)
T ss_dssp             ----EEEEEECCCS--------SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ----cEEEEecCCC--------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence                1222222110        223445667777766665 45678888888777543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=98.53  E-value=4.7e-06  Score=84.56  Aligned_cols=212  Identities=6%  Similarity=-0.063  Sum_probs=119.3

Q ss_pred             CCcEEEEeec---CCCeeEEEEcccCccceecC-CCCc---CCCCCCCeeEEcCCCCCCeEEEEEEEeC----CCcEEEE
Q 043460          103 CNGLILLGSS---LSKHRYYVCNPLTKQCVAIP-KARE---DVLASPPALAFHPCDSSHYKIIRFLRAR----MDPEVDI  171 (368)
Q Consensus       103 ~~Glll~~~~---~~~~~~~v~NP~T~~~~~lP-~~~~---~~~~~~~~l~~d~~~~~~ykvv~~~~~~----~~~~~~v  171 (368)
                      .+|.|++.++   .....++++||.|++|..++ +.+.   ......++.+....   +-+|+.++...    ....+++
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~---~~~lyv~GG~~~~~~~~~dv~~  472 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR---NNQLLLIGGRKAPHQGLSDNWI  472 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT---TTEEEEECCBSSTTCBCCCCEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc---CCEEEEEcCCCCCCCccccEEE
Confidence            4454444432   13456899999999999998 5220   01111223332210   22466665543    1357999


Q ss_pred             EeCCCCCceeccccCCCCCceeeeccceEE-EeCCeEEEEEeC---CeEEEEEcCCCeEEEEEe----CCCCCCCCCCce
Q 043460          172 FSSENKTWITRKVSVKPRRPVSFYVLQSVY-SRGGILYNLTYR---STILRYNIEALSEAEIIE----VPDKNNHPCDSE  243 (368)
Q Consensus       172 yss~~~~W~~~~~~~~~~~p~~~~~~~~v~-~~~G~lywl~~~---~~il~fD~~~~~~~~~~~----lP~~~~~~~~~~  243 (368)
                      |+..+++|+....++.     .-....++. . +|.||.+++.   ..+.+||+.+.+|+ .+.    +|......  ..
T Consensus       473 yd~~t~~W~~~~~~p~-----~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~--~a  543 (695)
T 2zwa_A          473 FDMKTREWSMIKSLSH-----TRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFK-DVTPKDEFFQNSLVS--AG  543 (695)
T ss_dssp             EETTTTEEEECCCCSB-----CCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEE-ECCCSSGGGGSCCBS--CE
T ss_pred             EeCCCCcEEECCCCCC-----CcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceE-EccCCCCCCCcccce--eE
Confidence            9999999999874322     112333444 5 9999999872   27999999999999 654    44333221  11


Q ss_pred             eEEeeC-CeEEEEEEC--C---CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEec
Q 043460          244 VIGLCK-GALNYASRN--Q---STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHP  317 (368)
Q Consensus       244 ~l~~~~-G~L~~~~~~--~---~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~  317 (368)
                      .+...+ |+|++++..  +   ..-.+|..+-..+.+         .....|+.+..++  ......     .. ..+..
T Consensus       544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w---------~~~~~W~~~~~~p--~~~R~~-----~~-~~~~~  606 (695)
T 2zwa_A          544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA---------TEPITVIKKLQHP--LFQRYG-----SQ-IKYIT  606 (695)
T ss_dssp             EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCS---------SCCEEEEEEEECG--GGCCBS-----CE-EEEEE
T ss_pred             EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCcc---------ccceEEEEcCCCC--CCCccc-----ce-EEEeC
Confidence            111222 899999873  1   123566666554400         0000288877643  111111     11 12232


Q ss_pred             CCCEEEEe-e---------CCeEEEEECCCCeEEEec
Q 043460          318 NSDIIFLG-S---------CDMIYRYHLKTNKMELFS  344 (368)
Q Consensus       318 ~~~~v~~~-~---------~~~~~~ydl~t~~~~~v~  344 (368)
                      + +.||+. +         ...+..||+++++|+.+.
T Consensus       607 ~-~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~  642 (695)
T 2zwa_A          607 P-RKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP  642 (695)
T ss_dssp             T-TEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECC
T ss_pred             C-CEEEEECCccCCCCCCCCCeEEEEECCCCeEEEee
Confidence            2 445554 1         346999999999999654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.39  E-value=0.00017  Score=68.30  Aligned_cols=239  Identities=14%  Similarity=0.155  Sum_probs=116.3

Q ss_pred             CCCHH----HHHHHHcCCCchhhHHHhhhhHHHHhhhcCCchhhhh-cC---CCCC----------ceEeecc-CCCC--
Q 043460            5 YLSED----LITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRIL-RA---PSPL----------CGFLFPS-TQDS--   63 (368)
Q Consensus         5 ~LP~D----ll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f~~~~-~~---~~~~----------~~~~~~~-~~~~--   63 (368)
                      .||+|    ++..||+.|++++|+++++|||+|+.++.++.+=+++ .+   ..++          .-+++.. ....  
T Consensus        13 ~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   92 (435)
T 1p22_A           13 ALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDGNA   92 (435)
T ss_dssp             HTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC---------
T ss_pred             HCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCCCCCC
Confidence            58999    9999999999999999999999999999987642221 00   0000          0001100 0000  


Q ss_pred             --CCe-eecc--------CCCCCCCCCCcccccccccCCCCCCCcEEEecCCcEEEEeecCCCeeEEEEcccCccceec-
Q 043460           64 --IGY-ISYS--------DNEECGNDGEGFAQSLTSLLPSESLPYALIDCCNGLILLGSSLSKHRYYVCNPLTKQCVAI-  131 (368)
Q Consensus        64 --~~~-~~f~--------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~l-  131 (368)
                        ... ..+.        .....+.........+... ......+..+...+..++...  ....+.|||..|++.... 
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~v~~~~~d~~~l~~g~--~dg~i~iwd~~~~~~~~~~  169 (435)
T 1p22_A           93 PPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCR-SETSKGVYCLQYDDQKIVSGL--RDNTIKIWDKNTLECKRIL  169 (435)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECC-CSSCCCEEEEECCSSEEEEEE--SSSCEEEEESSSCCEEEEE
T ss_pred             CchhhHHhhhhhhhcchhHHHhhhccCCccceEEecc-cCCCCcEEEEEECCCEEEEEe--CCCeEEEEeCCCCeEEEEE
Confidence              000 0000        0000000000000000000 001122344444444554444  667899999988876543 


Q ss_pred             CCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEE
Q 043460          132 PKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLT  211 (368)
Q Consensus       132 P~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~  211 (368)
                      +...    .....+.+|.    .  .+....  ....+.+++..++.-...-....       ..-.++.. ++.....+
T Consensus       170 ~~h~----~~v~~l~~~~----~--~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~-------~~v~~l~~-~~~~l~s~  229 (435)
T 1p22_A          170 TGHT----GSVLCLQYDE----R--VIITGS--SDSTVRVWDVNTGEMLNTLIHHC-------EAVLHLRF-NNGMMVTC  229 (435)
T ss_dssp             CCCS----SCEEEEECCS----S--EEEEEE--TTSCEEEEESSSCCEEEEECCCC-------SCEEEEEC-CTTEEEEE
T ss_pred             cCCC----CcEEEEEECC----C--EEEEEc--CCCeEEEEECCCCcEEEEEcCCC-------CcEEEEEE-cCCEEEEe
Confidence            2211    1223344332    2  222222  34578899988875332211000       01124555 44433333


Q ss_pred             e-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEcc
Q 043460          212 Y-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDD  269 (368)
Q Consensus       212 ~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~  269 (368)
                      . ++.|..+|+.+.+-............   .......+|...++...+..+.||-+..
T Consensus       230 s~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~l~s~~~dg~i~vwd~~~  285 (435)
T 1p22_A          230 SKDRSIAVWDMASPTDITLRRVLVGHRA---AVNVVDFDDKYIVSASGDRTIKVWNTST  285 (435)
T ss_dssp             ETTSCEEEEECSSSSCCEEEEEECCCSS---CEEEEEEETTEEEEEETTSEEEEEETTT
T ss_pred             eCCCcEEEEeCCCCCCceeeeEecCCCC---cEEEEEeCCCEEEEEeCCCeEEEEECCc
Confidence            3 78899999987653211111111111   1122233777777777788999998765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.22  E-value=3e-05  Score=78.09  Aligned_cols=212  Identities=9%  Similarity=0.056  Sum_probs=121.3

Q ss_pred             EecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEe-C---CCcEEEEEeCC
Q 043460          100 IDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRA-R---MDPEVDIFSSE  175 (368)
Q Consensus       100 ~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~-~---~~~~~~vyss~  175 (368)
                      ....+|.|++........+.++||.|++|..+|+++..+.  .++...-+    +-||+.++.. .   ....+++|+..
T Consensus       249 ~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~--~~s~~~~~----dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          249 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG--YQSSATMS----DGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS--SCEEEECT----TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             cCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccc--ccceEEec----CCeEEEEeCcccCCcccccceEeCCC
Confidence            3345777776655344579999999999999998774332  12222221    2246666542 1   23679999999


Q ss_pred             CCCceeccccCCCCCceeeec-cceEEEeCCeEEEEEe----------CCeEEEEEcCCCeEEEEEeCCCC-----CCCC
Q 043460          176 NKTWITRKVSVKPRRPVSFYV-LQSVYSRGGILYNLTY----------RSTILRYNIEALSEAEIIEVPDK-----NNHP  239 (368)
Q Consensus       176 ~~~W~~~~~~~~~~~p~~~~~-~~~v~~~~G~lywl~~----------~~~il~fD~~~~~~~~~~~lP~~-----~~~~  239 (368)
                      +++|+......  ..|..... ...+.. ++.+|.+.+          ...+..||+.+.+|......+..     ....
T Consensus       323 t~~W~~~~~~~--~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~  399 (656)
T 1k3i_A          323 SKTWTSLPNAK--VNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM  399 (656)
T ss_dssp             TTEEEEETTSC--SGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred             CCcceeCCCcc--ccccccccccceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCC
Confidence            99999874211  00111111 122335 777777764          35789999999998723322211     0011


Q ss_pred             CCceeEE--eeCCeEEEEEECC---------CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEE--EeeeccccccCcc
Q 043460          240 CDSEVIG--LCKGALNYASRNQ---------STLLIWQLDDHRHHSNSHGSNKAASGARSWILKH--SICMDEWGNKLHV  306 (368)
Q Consensus       240 ~~~~~l~--~~~G~L~~~~~~~---------~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~--~i~~~~~~~~~~~  306 (368)
                      . ...+.  ..+|+|++++...         ....|+..+-...               .|..+.  .++.....     
T Consensus       400 ~-~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~---------------~W~~~~~~~mp~~R~~-----  458 (656)
T 1k3i_A          400 C-GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS---------------PNTVFASNGLYFARTF-----  458 (656)
T ss_dssp             T-CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC---------------CEEEECTTCCSSCCBS-----
T ss_pred             C-CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC---------------CeeEEccCCCCCCccc-----
Confidence            0 11221  3489999998621         1124555554445               898875  44422111     


Q ss_pred             ccceEEEEEecCCCEEEEee------------CCeEEEEECCCCeEEEecc
Q 043460          307 FGLTRFYNIHPNSDIIFLGS------------CDMIYRYHLKTNKMELFST  345 (368)
Q Consensus       307 ~~~~~~~~~~~~~~~v~~~~------------~~~~~~ydl~t~~~~~v~~  345 (368)
                          .-..+.+++.++++..            ...+..||+++++|+.+..
T Consensus       459 ----~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~  505 (656)
T 1k3i_A          459 ----HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP  505 (656)
T ss_dssp             ----CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred             ----CCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence                1122334555544432            1468999999999999875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.07  E-value=4.9e-05  Score=76.52  Aligned_cols=194  Identities=9%  Similarity=-0.011  Sum_probs=111.2

Q ss_pred             EEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---------CCcEEEEEeCCCCCceeccccCCC
Q 043460          118 YYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---------MDPEVDIFSSENKTWITRKVSVKP  188 (368)
Q Consensus       118 ~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---------~~~~~~vyss~~~~W~~~~~~~~~  188 (368)
                      ...+||.+++|..++++|..    .+..+.-+.   +-+|+.+....         ....+++|+..+++|+....+..+
T Consensus       168 ~~~~dp~~~~W~~~~~~P~~----~~~~av~~~---~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~  240 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPIV----PAAAAIEPT---SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK  240 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSSC----CSEEEEETT---TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS
T ss_pred             cccCCCCCCeeeeeccCCCC----ceeEEEEec---CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC
Confidence            34568999999998777631    123333331   33566665432         123689999999999988754322


Q ss_pred             CCceeeecc-ceEEEeCCeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeEEEEEE-CC---C
Q 043460          189 RRPVSFYVL-QSVYSRGGILYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGALNYASR-NQ---S  260 (368)
Q Consensus       189 ~~p~~~~~~-~~v~~~~G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~-~~---~  260 (368)
                      .   ..... .++.. +|.||.+++  ...+..||+.+.+|...-++|....    ...++.. +|+|+++.. .+   .
T Consensus       241 ~---~~~~~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~----~~s~~~~~dg~iyv~GG~~~~~~~  312 (656)
T 1k3i_A          241 H---DMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG----YQSSATMSDGRVFTIGGSWSGGVF  312 (656)
T ss_dssp             C---CCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS----SCEEEECTTSCEEEECCCCCSSSC
T ss_pred             C---CCccccccCCC-CCCEEEeCCCCCCceEEecCcCCceeECCCCCcccc----ccceEEecCCeEEEEeCcccCCcc
Confidence            1   11111 23456 899999987  4579999999999993334443322    2355666 999999987 22   1


Q ss_pred             eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeecccccc-Ccc----ccceEEEEEecCCCEEEEeeCCeEEEEEC
Q 043460          261 TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNK-LHV----FGLTRFYNIHPNSDIIFLGSCDMIYRYHL  335 (368)
Q Consensus       261 ~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~-~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~ydl  335 (368)
                      .-.+++.+-..+               .|+.+.......+... ...    .....+++ ..++.++.......+.+||+
T Consensus       313 ~~~~e~yd~~t~---------------~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~G-g~~g~~~~~~~~~~v~~yd~  376 (656)
T 1k3i_A          313 EKNGEVYSPSSK---------------TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG-WKKGSVFQAGPSTAMNWYYT  376 (656)
T ss_dssp             CCCEEEEETTTT---------------EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEE-CGGGCEEECCSSSEEEEEEC
T ss_pred             cccceEeCCCCC---------------cceeCCCccccccccccccceeecCCceEEEE-CCCCcEEEecCccceeeeec
Confidence            123444444445               8998743221111111 000    01122222 22333332234568999999


Q ss_pred             CCCeEEE
Q 043460          336 KTNKMEL  342 (368)
Q Consensus       336 ~t~~~~~  342 (368)
                      ++++|..
T Consensus       377 ~~~~w~~  383 (656)
T 1k3i_A          377 SGSGDVK  383 (656)
T ss_dssp             STTCEEE
T ss_pred             CCcceee
Confidence            9998764

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.76  E-value=1.1e-05  Score=71.49  Aligned_cols=38  Identities=21%  Similarity=0.279  Sum_probs=36.5

Q ss_pred             CCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCch
Q 043460            5 YLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI   42 (368)
Q Consensus         5 ~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f   42 (368)
                      .||+|++..||+.|++++|+|+.+|||+||.+.+++..
T Consensus         7 ~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~L   44 (312)
T 3l2o_B            7 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPIL   44 (312)
T ss_dssp             HSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHH
T ss_pred             hCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchH
Confidence            69999999999999999999999999999999999865

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.74  E-value=0.0003  Score=71.26  Aligned_cols=155  Identities=7%  Similarity=-0.087  Sum_probs=94.5

Q ss_pred             CcEEEEEeCCCCCceecc-ccCCCCCceeeeccceEEEe-CCeEEEEEe-------CCeEEEEEcCCCeEEEEEeCCCCC
Q 043460          166 DPEVDIFSSENKTWITRK-VSVKPRRPVSFYVLQSVYSR-GGILYNLTY-------RSTILRYNIEALSEAEIIEVPDKN  236 (368)
Q Consensus       166 ~~~~~vyss~~~~W~~~~-~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-------~~~il~fD~~~~~~~~~~~lP~~~  236 (368)
                      ...+.+|+..+++|+... .......|..-....++.+. +|.+|.+++       -..+..||+.+.+|+..-++|...
T Consensus       411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R  490 (695)
T 2zwa_A          411 VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR  490 (695)
T ss_dssp             CCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred             cCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence            346899999999999987 31111111111222334442 788999987       146899999999999333455433


Q ss_pred             CCCCCceeEEe-eCCeEEEEEEC-CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEE
Q 043460          237 NHPCDSEVIGL-CKGALNYASRN-QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYN  314 (368)
Q Consensus       237 ~~~~~~~~l~~-~~G~L~~~~~~-~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~  314 (368)
                      .    ....+. .+|+|++++.. ... .+|..+-..+               .|+.+...........     ....+.
T Consensus       491 ~----~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~---------------~W~~~~~~g~~p~~r~-----~~~a~v  545 (695)
T 2zwa_A          491 F----RHSACSLPDGNVLILGGVTEGP-AMLLYNVTEE---------------IFKDVTPKDEFFQNSL-----VSAGLE  545 (695)
T ss_dssp             B----SCEEEECTTSCEEEECCBCSSC-SEEEEETTTT---------------EEEECCCSSGGGGSCC-----BSCEEE
T ss_pred             c----cceEEEEcCCEEEEECCCCCCC-CEEEEECCCC---------------ceEEccCCCCCCCccc-----ceeEEE
Confidence            2    224555 49999999873 333 7888877666               8999876321001111     011122


Q ss_pred             EecCCCEEEEee---------CCeEEEEECCCCe------EEEecc
Q 043460          315 IHPNSDIIFLGS---------CDMIYRYHLKTNK------MELFST  345 (368)
Q Consensus       315 ~~~~~~~v~~~~---------~~~~~~ydl~t~~------~~~v~~  345 (368)
                      +..+.+.||+.+         ...+++||+++++      |+.+..
T Consensus       546 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~  591 (695)
T 2zwa_A          546 FDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ  591 (695)
T ss_dssp             EETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE
T ss_pred             EeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC
Confidence            333435566652         2469999999999      888754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.29  E-value=0.00011  Score=67.05  Aligned_cols=39  Identities=26%  Similarity=0.359  Sum_probs=36.1

Q ss_pred             CCCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCch
Q 043460            4 IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI   42 (368)
Q Consensus         4 ~~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f   42 (368)
                      ..||+|++.+||.+|+.+++++++.|||+|+.++.++..
T Consensus        10 ~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~   48 (336)
T 2ast_B           10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (336)
T ss_dssp             SSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred             hhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence            479999999999999999999999999999999987654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.74  E-value=0.00064  Score=67.08  Aligned_cols=33  Identities=18%  Similarity=0.465  Sum_probs=29.5

Q ss_pred             CCCCHHHHHHHHcCCC-chhhHHHhhhhHHHHhh
Q 043460            4 IYLSEDLITEILSRLP-VKSVVGFKIVSKTWNNL   36 (368)
Q Consensus         4 ~~LP~Dll~~IL~rLp-~~~l~r~r~Vck~Wr~l   36 (368)
                      ..||+|++.+||++|| .+++++++.|||+|+.+
T Consensus         7 ~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            7 LSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ---CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             hhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4799999999999999 99999999999999988

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.63  E-value=0.36  Score=43.39  Aligned_cols=194  Identities=12%  Similarity=0.090  Sum_probs=110.8

Q ss_pred             CCcEEEEeecCCCeeEEEEcccCccc-eecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460          103 CNGLILLGSSLSKHRYYVCNPLTKQC-VAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT  181 (368)
Q Consensus       103 ~~Glll~~~~~~~~~~~v~NP~T~~~-~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~  181 (368)
                      .++.+.+... ....+.|+|+.|++. ..+|...     ...++.+++.   . +++....  ....+.+++..+++-..
T Consensus        52 ~~~~lyv~~~-~~~~v~viD~~t~~~~~~i~~~~-----~p~~i~~~~~---g-~lyv~~~--~~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           52 RDGIGWIVVN-NSHVIFAIDINTFKEVGRITGFT-----SPRYIHFLSD---E-KAYVTQI--WDYRIFIINPKTYEITG  119 (328)
T ss_dssp             ETTEEEEEEG-GGTEEEEEETTTCCEEEEEECCS-----SEEEEEEEET---T-EEEEEEB--SCSEEEEEETTTTEEEE
T ss_pred             ECCEEEEEEc-CCCEEEEEECcccEEEEEcCCCC-----CCcEEEEeCC---C-eEEEEEC--CCCeEEEEECCCCeEEE
Confidence            3455555443 456899999999987 4465321     2345666552   3 5554442  24678899998876432


Q ss_pred             ccccCCCC-CceeeeccceEEEeCCeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEEC
Q 043460          182 RKVSVKPR-RPVSFYVLQSVYSRGGILYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRN  258 (368)
Q Consensus       182 ~~~~~~~~-~p~~~~~~~~v~~~~G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~  258 (368)
                      .-. .... .... ....-+.. +|.+|....  ...|.++|+.+.+....++.+.....     .....+|+++++...
T Consensus       120 ~i~-~g~~~~~~~-~p~~i~~~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~-----i~~~~dG~l~v~~~~  191 (328)
T 3dsm_A          120 YIE-CPDMDMESG-STEQMVQY-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTS-----LVMDKYNKMWTITDG  191 (328)
T ss_dssp             EEE-CTTCCTTTC-BCCCEEEE-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCC-----CEECTTSEEEEEBCC
T ss_pred             EEE-cCCccccCC-CcceEEEE-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccc-----eEEcCCCCEEEEECC
Confidence            111 1110 0000 11111225 888988864  67899999999887646665432211     223447898777653


Q ss_pred             C---C-----eEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeCCeE
Q 043460          259 Q---S-----TLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMI  330 (368)
Q Consensus       259 ~---~-----~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  330 (368)
                      .   .     .-.|++++..+.               +-  +..+..+. .      ....-+++.++++.+|+... .+
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~---------------~v--~~~~~~~~-g------~~p~~la~~~d~~~lyv~~~-~v  246 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETF---------------TV--EKQFKFKL-G------DWPSEVQLNGTRDTLYWINN-DI  246 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTT---------------EE--EEEEECCT-T------CCCEEEEECTTSCEEEEESS-SE
T ss_pred             CccCCccccCCceEEEEECCCC---------------eE--EEEEecCC-C------CCceeEEEecCCCEEEEEcc-EE
Confidence            2   0     134555555323               32  23333211 0      11244677888888988765 99


Q ss_pred             EEEECCCCeEE
Q 043460          331 YRYHLKTNKME  341 (368)
Q Consensus       331 ~~ydl~t~~~~  341 (368)
                      +.+|++++++.
T Consensus       247 ~~~d~~t~~~~  257 (328)
T 3dsm_A          247 WRMPVEADRVP  257 (328)
T ss_dssp             EEEETTCSSCC
T ss_pred             EEEECCCCcee
Confidence            99999998864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.45  E-value=0.0011  Score=65.47  Aligned_cols=34  Identities=15%  Similarity=0.354  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHcCC-CchhhHHHhhhhHHHHhhh
Q 043460            4 IYLSEDLITEILSRL-PVKSVVGFKIVSKTWNNLI   37 (368)
Q Consensus         4 ~~LP~Dll~~IL~rL-p~~~l~r~r~Vck~Wr~li   37 (368)
                      ..||+|++.+||++| |.+++.+++.|||+|+.+.
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            479999999999999 8999999999999999874

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=95.31  E-value=1.4  Score=38.84  Aligned_cols=192  Identities=7%  Similarity=0.008  Sum_probs=106.4

Q ss_pred             CCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc-ee
Q 043460          103 CNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW-IT  181 (368)
Q Consensus       103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W-~~  181 (368)
                      ..+.+++... ....+.+||+.|++....-...  . ... ++.++|.  +.+ ++....  ....+.+++..++.- ..
T Consensus         8 ~~~~~~v~~~-~~~~v~~~d~~~~~~~~~~~~~--~-~~~-~~~~s~d--g~~-l~~~~~--~~~~i~~~d~~~~~~~~~   77 (331)
T 3u4y_A            8 TSNFGIVVEQ-HLRRISFFSTDTLEILNQITLG--Y-DFV-DTAITSD--CSN-VVVTSD--FCQTLVQIETQLEPPKVV   77 (331)
T ss_dssp             CCCEEEEEEG-GGTEEEEEETTTCCEEEEEECC--C-CEE-EEEECSS--SCE-EEEEES--TTCEEEEEECSSSSCEEE
T ss_pred             CCCEEEEEec-CCCeEEEEeCcccceeeeEEcc--C-Ccc-eEEEcCC--CCE-EEEEeC--CCCeEEEEECCCCceeEE
Confidence            3455555543 5668999999999876532221  1 112 6777773  343 333332  245788999988864 21


Q ss_pred             ccccCCCCCceeeeccceEEEeCCe-EEEEEeCC----eEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCe-EEE
Q 043460          182 RKVSVKPRRPVSFYVLQSVYSRGGI-LYNLTYRS----TILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGA-LNY  254 (368)
Q Consensus       182 ~~~~~~~~~p~~~~~~~~v~~~~G~-lywl~~~~----~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~-L~~  254 (368)
                      ... .. ..|..   .-.+.- +|. +| .....    .|..+|+.+.+....++.+..      ...+.. .+|+ |++
T Consensus        78 ~~~-~~-~~~~~---~~~~s~-dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~------~~~~~~spdg~~l~~  144 (331)
T 3u4y_A           78 AIQ-EG-QSSMA---DVDITP-DDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYD------AVGIAISPNGNGLIL  144 (331)
T ss_dssp             EEE-EC-SSCCC---CEEECT-TSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTT------EEEEEECTTSSCEEE
T ss_pred             ecc-cC-CCCcc---ceEECC-CCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCC------ccceEECCCCCEEEE
Confidence            111 00 00111   011222 454 55 44433    899999998876534444322      123333 3665 777


Q ss_pred             EEECCCe-EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEE
Q 043460          255 ASRNQST-LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIY  331 (368)
Q Consensus       255 ~~~~~~~-~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~  331 (368)
                      ....... +.+|.++..+.               ........ .   ...    ....-+.+.+++..+|+.  ....+.
T Consensus       145 ~~~~~~~~i~~~~~~~~g~---------------~~~~~~~~-~---~~~----~~~~~~~~spdg~~l~v~~~~~~~v~  201 (331)
T 3u4y_A          145 IDRSSANTVRRFKIDADGV---------------LFDTGQEF-I---SGG----TRPFNITFTPDGNFAFVANLIGNSIG  201 (331)
T ss_dssp             EEETTTTEEEEEEECTTCC---------------EEEEEEEE-E---CSS----SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EecCCCceEEEEEECCCCc---------------EeecCCcc-c---cCC----CCccceEECCCCCEEEEEeCCCCeEE
Confidence            7676666 99999986432               22211111 1   111    123446778888877776  456899


Q ss_pred             EEECCCCeE
Q 043460          332 RYHLKTNKM  340 (368)
Q Consensus       332 ~ydl~t~~~  340 (368)
                      .||+++.+.
T Consensus       202 v~d~~~~~~  210 (331)
T 3u4y_A          202 ILETQNPEN  210 (331)
T ss_dssp             EEECSSTTS
T ss_pred             EEECCCCcc
Confidence            999998774

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=94.87  E-value=1.1  Score=38.57  Aligned_cols=110  Identities=14%  Similarity=0.134  Sum_probs=73.6

Q ss_pred             ceEEEeCCeEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCC
Q 043460          198 QSVYSRGGILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHS  274 (368)
Q Consensus       198 ~~v~~~~G~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~  274 (368)
                      +++...+|.||.-++   +..|.++|+.+++....+++|....    ...++..+++|+.+...+..  +|+.+..    
T Consensus        24 qGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f----geGi~~~~~~ly~ltw~~~~--v~v~D~~----   93 (243)
T 3mbr_X           24 EGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF----GAGIVAWRDRLIQLTWRNHE--GFVYDLA----   93 (243)
T ss_dssp             EEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC----EEEEEEETTEEEEEESSSSE--EEEEETT----
T ss_pred             ccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc----eeEEEEeCCEEEEEEeeCCE--EEEEECC----
Confidence            455553888888776   3589999999998865788886532    23456678999998765544  4555542    


Q ss_pred             CCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEE
Q 043460          275 NSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKME  341 (368)
Q Consensus       275 ~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~  341 (368)
                                   .-.++.+++...        ..   .++..+++.+|+. .+.++..+|++|.+..
T Consensus        94 -------------tl~~~~ti~~~~--------~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~  137 (243)
T 3mbr_X           94 -------------TLTPRARFRYPG--------EG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQV  137 (243)
T ss_dssp             -------------TTEEEEEEECSS--------CC---CEEEECSSCEEEECSSSEEEEECTTTCCEE
T ss_pred             -------------cCcEEEEEeCCC--------Cc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEE
Confidence                         345666776432        11   2445566767776 5678999999997764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=94.66  E-value=1.9  Score=37.10  Aligned_cols=189  Identities=12%  Similarity=0.054  Sum_probs=96.7

Q ss_pred             cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460          102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT  181 (368)
Q Consensus       102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~  181 (368)
                      ..+|.+.+... ....++++|| +++...+..+.  ......++..|+.  +  ++.....  ....+.+|+. ++....
T Consensus       107 ~~~g~l~v~~~-~~~~i~~~d~-~g~~~~~~~~~--~~~~~~~i~~~~~--g--~l~v~~~--~~~~i~~~~~-~g~~~~  175 (299)
T 2z2n_A          107 GPNGDIWFTEM-NGNRIGRITD-DGKIREYELPN--KGSYPSFITLGSD--N--ALWFTEN--QNNAIGRITE-SGDITE  175 (299)
T ss_dssp             CTTSCEEEEET-TTTEEEEECT-TCCEEEEECSS--TTCCEEEEEECTT--S--CEEEEET--TTTEEEEECT-TCCEEE
T ss_pred             CCCCCEEEEec-CCceEEEECC-CCCEEEecCCC--CCCCCceEEEcCC--C--CEEEEeC--CCCEEEEEcC-CCcEEE
Confidence            34666666543 3567889999 77766543221  1123346677762  2  2322221  2356778888 776654


Q ss_pred             ccccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEEC
Q 043460          182 RKVSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRN  258 (368)
Q Consensus       182 ~~~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~  258 (368)
                      .......    .  .-.++.+. +|.+|+... ...|..||+ +.++. .+.+|.....   ...+.. .+|.|++....
T Consensus       176 ~~~~~~~----~--~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~---~~~i~~~~~g~l~v~~~~  244 (299)
T 2z2n_A          176 FKIPTPA----S--GPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNAR---PHAITAGAGIDLWFTEWG  244 (299)
T ss_dssp             EECSSTT----C--CEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCC---EEEEEECSTTCEEEEETT
T ss_pred             eeCCCCC----C--cceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCC---ceeEEECCCCCEEEeccC
Confidence            3211110    1  11123331 578766554 578999999 77777 6666632211   223333 36887777655


Q ss_pred             CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCC
Q 043460          259 QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKT  337 (368)
Q Consensus       259 ~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t  337 (368)
                      ...+.++..   ++               ...   .+...   ...   ....-+.+ .++. +++. ....+++||+++
T Consensus       245 ~~~i~~~d~---~g---------------~~~---~~~~~---~~~---~~~~~i~~-~~g~-l~v~~~~~~l~~~~~~~  295 (299)
T 2z2n_A          245 ANKIGRLTS---NN---------------IIE---EYPIQ---IKS---AEPHGICF-DGET-IWFAMECDKIGKLTLIK  295 (299)
T ss_dssp             TTEEEEEET---TT---------------EEE---EEECS---SSS---CCEEEEEE-CSSC-EEEEETTTEEEEEEEC-
T ss_pred             CceEEEECC---CC---------------ceE---EEeCC---CCC---CccceEEe-cCCC-EEEEecCCcEEEEEcCc
Confidence            556655543   12               221   12111   000   11233444 5555 5555 567899999999


Q ss_pred             CeEE
Q 043460          338 NKME  341 (368)
Q Consensus       338 ~~~~  341 (368)
                      ++++
T Consensus       296 ~~~~  299 (299)
T 2z2n_A          296 DNME  299 (299)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            8764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=94.52  E-value=2.5  Score=37.76  Aligned_cols=197  Identities=11%  Similarity=0.049  Sum_probs=105.6

Q ss_pred             CcEEEEeec---CCCeeEEEEcccCcccee-cCCC--CcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCC
Q 043460          104 NGLILLGSS---LSKHRYYVCNPLTKQCVA-IPKA--REDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK  177 (368)
Q Consensus       104 ~Glll~~~~---~~~~~~~v~NP~T~~~~~-lP~~--~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~  177 (368)
                      +|++++...   .....+.++||.|++... ++..  .........++.++.    +. ++.+..  ..-.+.+++..++
T Consensus         2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~----~~-lyv~~~--~~~~v~viD~~t~   74 (328)
T 3dsm_A            2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD----GI-GWIVVN--NSHVIFAIDINTF   74 (328)
T ss_dssp             CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET----TE-EEEEEG--GGTEEEEEETTTC
T ss_pred             CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC----CE-EEEEEc--CCCEEEEEECccc
Confidence            466666542   125789999999998764 2110  000001112344432    22 332222  2457899999988


Q ss_pred             CceeccccCCCCCceeeeccceEEEeCCeEEEEE-eCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEE
Q 043460          178 TWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLT-YRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYAS  256 (368)
Q Consensus       178 ~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~-~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~  256 (368)
                      +-...-.  ....|..    -.+.- +|.+|+.. ....|.++|+.+.+....++++...........++..+|+|++..
T Consensus        75 ~~~~~i~--~~~~p~~----i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~  147 (328)
T 3dsm_A           75 KEVGRIT--GFTSPRY----IHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNC  147 (328)
T ss_dssp             CEEEEEE--CCSSEEE----EEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEE
T ss_pred             EEEEEcC--CCCCCcE----EEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEc
Confidence            7522211  0011111    12335 89998887 478999999999887646776651100000123444788998887


Q ss_pred             EC-CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-C-------
Q 043460          257 RN-QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-C-------  327 (368)
Q Consensus       257 ~~-~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~-------  327 (368)
                      .. +..+.++-++.  .               +.  +.+++...-+         .-+.+.+++.+.+... .       
T Consensus       148 ~~~~~~v~viD~~t--~---------------~~--~~~i~~g~~p---------~~i~~~~dG~l~v~~~~~~~~~~~~  199 (328)
T 3dsm_A          148 WSYQNRILKIDTET--D---------------KV--VDELTIGIQP---------TSLVMDKYNKMWTITDGGYEGSPYG  199 (328)
T ss_dssp             CTTCCEEEEEETTT--T---------------EE--EEEEECSSCB---------CCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred             CCCCCEEEEEECCC--C---------------eE--EEEEEcCCCc---------cceEEcCCCCEEEEECCCccCCccc
Confidence            63 55555554333  2               22  2334322111         1134566666444332 2       


Q ss_pred             ---CeEEEEECCCCeEEE
Q 043460          328 ---DMIYRYHLKTNKMEL  342 (368)
Q Consensus       328 ---~~~~~ydl~t~~~~~  342 (368)
                         ..++++|.+|+++.+
T Consensus       200 ~~~~~v~~id~~t~~v~~  217 (328)
T 3dsm_A          200 YEAPSLYRIDAETFTVEK  217 (328)
T ss_dssp             BCCCEEEEEETTTTEEEE
T ss_pred             cCCceEEEEECCCCeEEE
Confidence               579999999998764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=94.42  E-value=2.6  Score=37.71  Aligned_cols=118  Identities=17%  Similarity=0.199  Sum_probs=71.2

Q ss_pred             CCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeE-EEEEEC-CCeEEEEEEccCCCCCCCCC
Q 043460          204 GGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGAL-NYASRN-QSTLLIWQLDDHRHHSNSHG  278 (368)
Q Consensus       204 ~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L-~~~~~~-~~~~~IW~l~~~~~~~~~~~  278 (368)
                      +|. +|.... ...|.+||+.+.++.....++...........+.. .+|+. ++.... ...+.||.++..++      
T Consensus       221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g------  294 (361)
T 3scy_A          221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG------  294 (361)
T ss_dssp             TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC------
T ss_pred             CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC------
Confidence            665 665553 67899999988877522223221111111223443 37764 444445 67899999985544      


Q ss_pred             CccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee--CCe--EEEEECCCCeEEEecc
Q 043460          279 SNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS--CDM--IYRYHLKTNKMELFST  345 (368)
Q Consensus       279 ~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~--~~~ydl~t~~~~~v~~  345 (368)
                               .+..+..+..   .      ...+-+++.+++..+++..  ...  ++.+|.++++++.+..
T Consensus       295 ---------~~~~~~~~~~---g------~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~  347 (361)
T 3scy_A          295 ---------TLTKVGYQLT---G------IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK  347 (361)
T ss_dssp             ---------CEEEEEEEEC---S------SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC
T ss_pred             ---------cEEEeeEecC---C------CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce
Confidence                     6776666653   1      1123367888888888773  344  4447888999988764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=94.30  E-value=3.2  Score=38.20  Aligned_cols=151  Identities=9%  Similarity=0.120  Sum_probs=84.0

Q ss_pred             EEEe-cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCC
Q 043460           98 ALID-CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSEN  176 (368)
Q Consensus        98 ~~~~-s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~  176 (368)
                      .+++ |.+++|-+.   -...++|||..|++...+-.... .......+.+.|.  +.|-  +.+.  ....+.+++.++
T Consensus       109 ~~l~wS~~n~lAvg---ld~tV~lWd~~tg~~~~~~~~~~-~~~~V~sv~fspd--g~~l--asgs--~Dg~v~iWd~~~  178 (420)
T 4gga_A          109 NLVDWSSGNVLAVA---LDNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKE--GNYL--AVGT--SSAEVQLWDVQQ  178 (420)
T ss_dssp             BCEEECTTSEEEEE---ETTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTT--SSEE--EEEE--TTSCEEEEETTT
T ss_pred             eeEEECCCCEEEEE---eCCEEEEEECCCCCEEEEEEecC-CCCcEEEEEECCC--CCEE--EEEE--CCCeEEEEEcCC
Confidence            3444 556766555   35689999999998776432211 1123345677762  3443  2232  355788999888


Q ss_pred             CCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCCeEEE
Q 043460          177 KTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKGALNY  254 (368)
Q Consensus       177 ~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G~L~~  254 (368)
                      +.-........       ..-.++.. ++.+-..+. +..+..+|....... ...+......   ...+. ..+|...+
T Consensus       179 ~~~~~~~~~h~-------~~v~~~s~-~~~~l~sgs~d~~i~~~d~~~~~~~-~~~~~~h~~~---~~~~~~~~~g~~l~  246 (420)
T 4gga_A          179 QKRLRNMTSHS-------ARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQE---VCGLRWAPDGRHLA  246 (420)
T ss_dssp             TEEEEEECCCS-------SCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCE-EEEEECCSSC---EEEEEECTTSSEEE
T ss_pred             CcEEEEEeCCC-------CceEEEee-CCCEEEEEeCCCceeEeeeccccee-eEEecccccc---eeeeeecCCCCeee
Confidence            75322211000       01124555 565444444 677888888776554 3333222111   11222 33677777


Q ss_pred             EEECCCeEEEEEEccC
Q 043460          255 ASRNQSTLLIWQLDDH  270 (368)
Q Consensus       255 ~~~~~~~~~IW~l~~~  270 (368)
                      ....+..+.||.....
T Consensus       247 s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          247 SGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             EEETTSCEEEEESSCC
T ss_pred             eeeccccceEEeeccc
Confidence            7778889999988765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=93.88  E-value=3.5  Score=37.14  Aligned_cols=187  Identities=13%  Similarity=0.142  Sum_probs=102.9

Q ss_pred             EEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecccc
Q 043460          106 LILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVS  185 (368)
Q Consensus       106 lll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~  185 (368)
                      .+++... ....+.+||..+++....-...    .....+.+.|.  +.+ ++....  ....+.+++..++.-...-..
T Consensus         3 ~l~vs~~-~d~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~d--g~~-l~~~~~--~d~~i~v~d~~~~~~~~~~~~   72 (391)
T 1l0q_A            3 FAYIANS-ESDNISVIDVTSNKVTATIPVG----SNPMGAVISPD--GTK-VYVANA--HSNDVSIIDTATNNVIATVPA   72 (391)
T ss_dssp             EEEEEET-TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTT--SSE-EEEEEG--GGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEcC-CCCEEEEEECCCCeEEEEeecC----CCcceEEECCC--CCE-EEEECC--CCCeEEEEECCCCeEEEEEEC
Confidence            4444443 5678899999988765432111    12345667762  333 322222  245788999988764332211


Q ss_pred             CCCCCceeeeccceEEEeCCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCe-EEEEEECCCe
Q 043460          186 VKPRRPVSFYVLQSVYSRGGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGA-LNYASRNQST  261 (368)
Q Consensus       186 ~~~~~p~~~~~~~~v~~~~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~-L~~~~~~~~~  261 (368)
                        ...+...    ...- +|. +|.... .+.|..+|+.+.+....+.....      ...+.. .+|+ |++....+..
T Consensus        73 --~~~v~~~----~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~~~~~  139 (391)
T 1l0q_A           73 --GSSPQGV----AVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS------PLGLALSPDGKKLYVTNNGDKT  139 (391)
T ss_dssp             --SSSEEEE----EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS------EEEEEECTTSSEEEEEETTTTE
T ss_pred             --CCCccce----EECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCC------cceEEECCCCCEEEEEeCCCCE
Confidence              0001111    1112 455 444443 57999999999877534443221      123333 3565 4455556778


Q ss_pred             EEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCe
Q 043460          262 LLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNK  339 (368)
Q Consensus       262 ~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~  339 (368)
                      +.+|-+..  .               +..  ..+...         ....-+.+.+++..+++.  .+..+..+|+++++
T Consensus       140 v~~~d~~~--~---------------~~~--~~~~~~---------~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~  191 (391)
T 1l0q_A          140 VSVINTVT--K---------------AVI--NTVSVG---------RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS  191 (391)
T ss_dssp             EEEEETTT--T---------------EEE--EEEECC---------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEECCC--C---------------cEE--EEEecC---------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence            99997654  2               222  222211         112345677788777665  45679999999987


Q ss_pred             EEEe
Q 043460          340 MELF  343 (368)
Q Consensus       340 ~~~v  343 (368)
                      ....
T Consensus       192 ~~~~  195 (391)
T 1l0q_A          192 VIDT  195 (391)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=93.88  E-value=3.3  Score=36.77  Aligned_cols=169  Identities=14%  Similarity=0.221  Sum_probs=91.0

Q ss_pred             CCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCC-CCCceecccc-CCCC-CceeeeccceEEEeCCe-EEEEEe-CCeE
Q 043460          142 PPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSE-NKTWITRKVS-VKPR-RPVSFYVLQSVYSRGGI-LYNLTY-RSTI  216 (368)
Q Consensus       142 ~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~-~~~W~~~~~~-~~~~-~p~~~~~~~~v~~~~G~-lywl~~-~~~i  216 (368)
                      ...+.++|.  +.  ++....  ....+.+|+.. ++........ .+.. .|...    .+.- +|. +|.... ...|
T Consensus       143 ~~~~~~spd--g~--l~v~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~----~~sp-dg~~l~v~~~~~~~v  211 (347)
T 3hfq_A          143 IHYTDLTPD--NR--LAVIDL--GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL----VFSP-DGQYAFLAGELSSQI  211 (347)
T ss_dssp             EEEEEECTT--SC--EEEEET--TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE----EECT-TSSEEEEEETTTTEE
T ss_pred             ceEEEECCC--Cc--EEEEeC--CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE----EECC-CCCEEEEEeCCCCEE
Confidence            345777773  33  333322  34578889887 5665543211 1111 11111    2222 676 665544 5667


Q ss_pred             EEEEcC--CCeEEEE--E-eCCCCCCCCCCceeEEe-eCCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCce
Q 043460          217 LRYNIE--ALSEAEI--I-EVPDKNNHPCDSEVIGL-CKGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSW  289 (368)
Q Consensus       217 l~fD~~--~~~~~~~--~-~lP~~~~~~~~~~~l~~-~~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W  289 (368)
                      .+||+.  +.++...  + ..|...........+.. .+|+ |++....+..+.+|.++.. +               .+
T Consensus       212 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~-g---------------~~  275 (347)
T 3hfq_A          212 ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD-G---------------HL  275 (347)
T ss_dssp             EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG-G---------------CE
T ss_pred             EEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC-C---------------cE
Confidence            777766  4665411  1 22322111111122333 4776 5666667789999999853 2               46


Q ss_pred             EEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEE--ECCCCeEEEecc
Q 043460          290 ILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRY--HLKTNKMELFST  345 (368)
Q Consensus       290 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~y--dl~t~~~~~v~~  345 (368)
                      ..+..++...        ....-+++.+++..+++.  ....+..|  |.++++++.+..
T Consensus       276 ~~~~~~~~~~--------~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~  327 (347)
T 3hfq_A          276 TLIQQISTEG--------DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQK  327 (347)
T ss_dssp             EEEEEEECSS--------SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             EEeEEEecCC--------CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEeccc
Confidence            6666555311        112336788888888887  33556666  888899887765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=93.30  E-value=1.7  Score=37.92  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=70.4

Q ss_pred             ceEEEeCCeEEEEEeC---CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCC
Q 043460          198 QSVYSRGGILYNLTYR---STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHS  274 (368)
Q Consensus       198 ~~v~~~~G~lywl~~~---~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~  274 (368)
                      +++...+|.||.-++.   ..|.++|+.+++....+++|....    ...++..+++|+++...+..+  |+.+-.    
T Consensus        46 qGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F----geGit~~g~~ly~ltw~~~~v--~v~D~~----  115 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF----GEGISDWKDKIVGLTWKNGLG--FVWNIR----  115 (262)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC----EEEEEEETTEEEEEESSSSEE--EEEETT----
T ss_pred             ceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccc----eeEEEEeCCEEEEEEeeCCEE--EEEECc----
Confidence            4544438888887763   489999999998865778875432    224666788998887655544  444442    


Q ss_pred             CCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEE
Q 043460          275 NSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKME  341 (368)
Q Consensus       275 ~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~  341 (368)
                                   .-.++.+++...-        .   .++..+++.+|+. ....+..+|++|.+..
T Consensus       116 -------------t~~~~~ti~~~~e--------G---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~  159 (262)
T 3nol_A          116 -------------NLRQVRSFNYDGE--------G---WGLTHNDQYLIMSDGTPVLRFLDPESLTPV  159 (262)
T ss_dssp             -------------TCCEEEEEECSSC--------C---CCEEECSSCEEECCSSSEEEEECTTTCSEE
T ss_pred             -------------cCcEEEEEECCCC--------c---eEEecCCCEEEEECCCCeEEEEcCCCCeEE
Confidence                         2345566664321        1   1344456667776 4567888898887654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=92.50  E-value=5.4  Score=35.33  Aligned_cols=214  Identities=6%  Similarity=0.036  Sum_probs=110.4

Q ss_pred             cCCcEEEEeec-CCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCC-CCCc
Q 043460          102 CCNGLILLGSS-LSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSE-NKTW  179 (368)
Q Consensus       102 s~~Glll~~~~-~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~-~~~W  179 (368)
                      +-+|-|.+... .....+.+|+..+++...+..... ......++.++|.  +.+-++ ...  ....+.+|+.. ++..
T Consensus        48 spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~p~~~a~spd--g~~l~~-~~~--~~~~v~v~~~~~~g~~  121 (347)
T 3hfq_A           48 SAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-PGTPPAYVAVDEA--RQLVYS-ANY--HKGTAEVMKIAADGAL  121 (347)
T ss_dssp             CTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE-ESCCCSEEEEETT--TTEEEE-EET--TTTEEEEEEECTTSCE
T ss_pred             ccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeec-CCCCCEEEEECCC--CCEEEE-EeC--CCCEEEEEEeCCCCCe
Confidence            44665443332 235789999998877665543111 1123456777773  344322 221  24567788774 4444


Q ss_pred             eeccccCCC-CCce--e---eeccceEEEeCCeEEEEEe-CCeEEEEEcC-CCeEEEE--EeCCCCCCCCCCceeEEe-e
Q 043460          180 ITRKVSVKP-RRPV--S---FYVLQSVYSRGGILYNLTY-RSTILRYNIE-ALSEAEI--IEVPDKNNHPCDSEVIGL-C  248 (368)
Q Consensus       180 ~~~~~~~~~-~~p~--~---~~~~~~v~~~~G~lywl~~-~~~il~fD~~-~~~~~~~--~~lP~~~~~~~~~~~l~~-~  248 (368)
                      +........ ..|.  .   ....-.+.- +|.+|.... ...|..||+. +++....  +..+....    ...++. .
T Consensus       122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~----p~~~~~sp  196 (347)
T 3hfq_A          122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFG----PRHLVFSP  196 (347)
T ss_dssp             EEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCC----EEEEEECT
T ss_pred             eecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCC----CceEEECC
Confidence            433211110 0010  0   000012223 677655443 5679999998 5555412  23332211    123333 3


Q ss_pred             CCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--
Q 043460          249 KGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--  325 (368)
Q Consensus       249 ~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--  325 (368)
                      +|+ |++.......+.+|.++...+               .+..+..+...  ...........-+++.++|..+|+.  
T Consensus       197 dg~~l~v~~~~~~~v~v~~~~~~~g---------------~~~~~~~~~~~--~~~~~~~~~~~~i~~spdG~~l~v~~~  259 (347)
T 3hfq_A          197 DGQYAFLAGELSSQIASLKYDTQTG---------------AFTQLGIVKTI--PADYTAHNGAAAIRLSHDGHFLYVSNR  259 (347)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTT---------------EEEEEEEEESS--CTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCC---------------ceEEeeeeeec--CCCCCCCCcceeEEECCCCCEEEEEeC
Confidence            777 555555677899999987544               66666555411  1100000123446788888888776  


Q ss_pred             eCCeEEEEECCCC-eEEEe
Q 043460          326 SCDMIYRYHLKTN-KMELF  343 (368)
Q Consensus       326 ~~~~~~~ydl~t~-~~~~v  343 (368)
                      ....+..||++.. +++.+
T Consensus       260 ~~~~v~v~~~~~~g~~~~~  278 (347)
T 3hfq_A          260 GYNTLAVFAVTADGHLTLI  278 (347)
T ss_dssp             TTTEEEEEEECGGGCEEEE
T ss_pred             CCCEEEEEEECCCCcEEEe
Confidence            3577899998733 44444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=92.46  E-value=4.9  Score=34.78  Aligned_cols=195  Identities=10%  Similarity=-0.007  Sum_probs=100.0

Q ss_pred             cCCcEEEEeecCCCeeEEEEcccCccceecCCCCc-CCCCCCCeeEEcCCCCCCeEEEEE--EE-----------eCCCc
Q 043460          102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKARE-DVLASPPALAFHPCDSSHYKIIRF--LR-----------ARMDP  167 (368)
Q Consensus       102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~-~~~~~~~~l~~d~~~~~~ykvv~~--~~-----------~~~~~  167 (368)
                      +.+|.+++... ....++++||.+++...+..... ........+.+|+.  +.+-+.-.  ..           .....
T Consensus        77 ~~dg~l~v~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~~~~~~~~~~~~~~  153 (296)
T 3e5z_A           77 NKQGHLIACSH-GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKPEEGYGGEMELPGR  153 (296)
T ss_dssp             CTTCCEEEEET-TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred             CCCCcEEEEec-CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC--CCEEEECCccccccccccccccccCCCc
Confidence            45676666543 34689999999998877643221 11223345677772  33222100  00           00122


Q ss_pred             EEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcC-CCeE-E--EEEeCCCCCCCCCCc
Q 043460          168 EVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIE-ALSE-A--EIIEVPDKNNHPCDS  242 (368)
Q Consensus       168 ~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~-~~~~-~--~~~~lP~~~~~~~~~  242 (368)
                      .+..++.. +.-+.....      .....+-++.- +|.+++... ...|.+||+. +++. .  ..+..  . .... .
T Consensus       154 ~l~~~~~~-g~~~~~~~~------~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~-~~~p-~  221 (296)
T 3e5z_A          154 WVFRLAPD-GTLSAPIRD------RVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV--E-PGKT-D  221 (296)
T ss_dssp             EEEEECTT-SCEEEEECC------CSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC--S-SSCC-C
T ss_pred             EEEEECCC-CCEEEeecC------CCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC--C-CCCC-C
Confidence            45555554 443332210      11111112223 677764433 5789999987 5555 2  12211  1 1110 1


Q ss_pred             eeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEE-ecCCCE
Q 043460          243 EVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNI-HPNSDI  321 (368)
Q Consensus       243 ~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~  321 (368)
                      ......+|.|++..  ...+.+|..+   +               .-.  ..+..+.-.         .-+.+ .++++.
T Consensus       222 ~i~~d~~G~l~v~~--~~~v~~~~~~---g---------------~~~--~~~~~~~~~---------~~~~f~~~d~~~  270 (296)
T 3e5z_A          222 GLRVDAGGLIWASA--GDGVHVLTPD---G---------------DEL--GRVLTPQTT---------SNLCFGGPEGRT  270 (296)
T ss_dssp             SEEEBTTSCEEEEE--TTEEEEECTT---S---------------CEE--EEEECSSCC---------CEEEEESTTSCE
T ss_pred             eEEECCCCCEEEEc--CCeEEEECCC---C---------------CEE--EEEECCCCc---------eeEEEECCCCCE
Confidence            23334588888877  4566665432   2               222  223321111         11344 457788


Q ss_pred             EEEeeCCeEEEEECCCCeEEE
Q 043460          322 IFLGSCDMIYRYHLKTNKMEL  342 (368)
Q Consensus       322 v~~~~~~~~~~ydl~t~~~~~  342 (368)
                      +|+.....+++++++++++|+
T Consensus       271 L~v~t~~~l~~~~~~~~~~~~  291 (296)
T 3e5z_A          271 LYMTVSTEFWSIETNVRGLEH  291 (296)
T ss_dssp             EEEEETTEEEEEECSCCBCCC
T ss_pred             EEEEcCCeEEEEEcccccccc
Confidence            999988899999999999875

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=92.41  E-value=6  Score=35.66  Aligned_cols=110  Identities=13%  Similarity=0.041  Sum_probs=60.2

Q ss_pred             CCcEEEEeecCCCeeEEEEcccCccceecCCCCcCC---CCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC-
Q 043460          103 CNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDV---LASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT-  178 (368)
Q Consensus       103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~---~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~-  178 (368)
                      .+|.|.+..  ....++.+|+.|++.++--..+...   ......+...+...++ +|+...   ..-.+..++.++|+ 
T Consensus        52 ~~~~v~~~~--~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~---~~g~l~a~d~~tG~~  125 (376)
T 3q7m_A           52 ADNVVYAAD--RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGG-HVYIGS---EKAQVYALNTSDGTV  125 (376)
T ss_dssp             ETTEEEEEC--TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETT-EEEEEE---TTSEEEEEETTTCCE
T ss_pred             ECCEEEEEc--CCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCC-EEEEEc---CCCEEEEEECCCCCE
Confidence            366666664  4558889999998866422111000   0000111111111111 233222   24568888888875 


Q ss_pred             -ceeccccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEE
Q 043460          179 -WITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEA  227 (368)
Q Consensus       179 -W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~  227 (368)
                       |+.....        .....++.. +|.+|.....+.+.+||..+++..
T Consensus       126 ~W~~~~~~--------~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~  166 (376)
T 3q7m_A          126 AWQTKVAG--------EALSRPVVS-DGLVLIHTSNGQLQALNEADGAVK  166 (376)
T ss_dssp             EEEEECSS--------CCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEEeCCC--------ceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEE
Confidence             7654311        012335677 898888777888999999877543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=92.31  E-value=5.5  Score=40.12  Aligned_cols=190  Identities=11%  Similarity=0.065  Sum_probs=98.5

Q ss_pred             CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460          114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS  193 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~  193 (368)
                      ..+.+.|||..++....+..... +......+.+.+...+. .++...   ....+.+++..++.|...........+. 
T Consensus        29 ~dg~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~~-~l~s~s---~Dg~I~vwd~~~~~~~~~~~~~~h~~~V-  102 (753)
T 3jro_A           29 SDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGT-ILASCS---YDGKVLIWKEENGRWSQIAVHAVHSASV-  102 (753)
T ss_dssp             TTTEEEEEEEETTEEEEEEEECC-CSSCEEEEEECCTTSCS-EEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCE-
T ss_pred             CCCcEEEEecCCCCCccceeccC-CcCceEEEEecCCCCCC-EEEEEe---CCCeEEEEECCCCcccccccccCCCCCe-
Confidence            44566777766433332221110 11233455665521122 333322   2457888998888876654321111011 


Q ss_pred             eeccceEEEe-C--CeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--------------CCeEEEE
Q 043460          194 FYVLQSVYSR-G--GILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--------------KGALNYA  255 (368)
Q Consensus       194 ~~~~~~v~~~-~--G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--------------~G~L~~~  255 (368)
                          .++.+. +  |.+...+. ++.|..+|+.+..-.....+......   ...+...              +|.+.++
T Consensus       103 ----~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~---v~~l~~~p~~~~~~~~~~~~~d~~~l~s  175 (753)
T 3jro_A          103 ----NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG---VNSASWAPATIEEDGEHNGTKESRKFVT  175 (753)
T ss_dssp             ----EEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC---EEEEEECCCC---------CGGGCCEEE
T ss_pred             ----EEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc---eEEEEecCcccccccccccCCCCCEEEE
Confidence                122220 2  54444444 67888999887632201111111100   1112211              4677777


Q ss_pred             EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecC---CCEEEEe-eCCeEE
Q 043460          256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPN---SDIIFLG-SCDMIY  331 (368)
Q Consensus       256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~-~~~~~~  331 (368)
                      +..+..+.||-+.....               .+.....+....        ..+.-+.+.++   +..++.. .++.+.
T Consensus       176 gs~dg~I~iwd~~~~~~---------------~~~~~~~~~~h~--------~~V~~l~~sp~~~~~~~l~s~s~Dg~I~  232 (753)
T 3jro_A          176 GGADNLVKIWKYNSDAQ---------------TYVLESTLEGHS--------DWVRDVAWSPTVLLRSYLASVSQDRTCI  232 (753)
T ss_dssp             EETTSCEEEEEEETTTT---------------EEEEEEEECCCS--------SCEEEEEECCCCSSSEEEEEEESSSCEE
T ss_pred             EECCCeEEEEeccCCcc---------------cceeeeeecCCC--------CcEEEEEeccCCCCCCEEEEEecCCEEE
Confidence            77888999999987654               676666554211        22444566776   5555555 566788


Q ss_pred             EEECCCCe
Q 043460          332 RYHLKTNK  339 (368)
Q Consensus       332 ~ydl~t~~  339 (368)
                      .||+++.+
T Consensus       233 iwd~~~~~  240 (753)
T 3jro_A          233 IWTQDNEQ  240 (753)
T ss_dssp             EEEESSSS
T ss_pred             EecCCCCC
Confidence            99988863

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=92.16  E-value=4.2  Score=35.46  Aligned_cols=107  Identities=13%  Similarity=0.144  Sum_probs=69.9

Q ss_pred             CeEEEEEe---CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCcc
Q 043460          205 GILYNLTY---RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNK  281 (368)
Q Consensus       205 G~lywl~~---~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~  281 (368)
                      |.||.-.+   ...|.++|+.+.+....+++|....    ...++..+++|++....+..+  ++.+-.           
T Consensus        32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f----geGi~~~g~~lyv~t~~~~~v--~viD~~-----------   94 (266)
T 2iwa_A           32 DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF----GEGLTLLNEKLYQVVWLKNIG--FIYDRR-----------   94 (266)
T ss_dssp             TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC----EEEEEEETTEEEEEETTCSEE--EEEETT-----------
T ss_pred             CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc----eEEEEEeCCEEEEEEecCCEE--EEEECC-----------
Confidence            78888765   5799999999988765777765322    224555677888887655554  445542           


Q ss_pred             CCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEE-Eec
Q 043460          282 AASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKME-LFS  344 (368)
Q Consensus       282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~-~v~  344 (368)
                            .-..+.+|+.. .+.      .   .++..+++.+|+. ....+..+|++|.+.. .+.
T Consensus        95 ------t~~v~~~i~~g-~~~------g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~  143 (266)
T 2iwa_A           95 ------TLSNIKNFTHQ-MKD------G---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN  143 (266)
T ss_dssp             ------TTEEEEEEECC-SSS------C---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             ------CCcEEEEEECC-CCC------e---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence                  34566677644 121      1   2455566667766 5678999999997754 444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=91.79  E-value=6.1  Score=34.42  Aligned_cols=199  Identities=8%  Similarity=0.070  Sum_probs=100.2

Q ss_pred             ecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460          101 DCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI  180 (368)
Q Consensus       101 ~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~  180 (368)
                      +..+|-|+..+. ....++.+||.+++...+....     ...+++.++.  +.  ++...    ...+.+|+.+++..+
T Consensus        21 ~~~~~~l~~~d~-~~~~i~~~d~~~~~~~~~~~~~-----~~~~i~~~~d--G~--l~v~~----~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           21 EEVSNSLLFVDI-PAKKVCRWDSFTKQVQRVTMDA-----PVSSVALRQS--GG--YVATI----GTKFCALNWKEQSAV   86 (297)
T ss_dssp             ETTTTEEEEEET-TTTEEEEEETTTCCEEEEECSS-----CEEEEEEBTT--SS--EEEEE----TTEEEEEETTTTEEE
T ss_pred             ECCCCEEEEEEC-CCCEEEEEECCCCcEEEEeCCC-----ceEEEEECCC--CC--EEEEE----CCeEEEEECCCCcEE
Confidence            334555555543 5568899999998776553221     2346677762  34  22222    347888999999887


Q ss_pred             eccccCCCCCceeeeccceEEE-eCCeEEEEEe------------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe
Q 043460          181 TRKVSVKPRRPVSFYVLQSVYS-RGGILYNLTY------------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL  247 (368)
Q Consensus       181 ~~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~------------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~  247 (368)
                      ....... ..+..  .-+.+.+ .+|.+|+-..            ...|..+|.... ......-   ...   .-.++.
T Consensus        87 ~~~~~~~-~~~~~--~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~---~~~---pngi~~  156 (297)
T 3g4e_A           87 VLATVDN-DKKNN--RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQ---VDI---SNGLDW  156 (297)
T ss_dssp             EEEECCT-TCSSE--EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEE---ESB---EEEEEE
T ss_pred             EEEecCC-CCCCC--CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeec---ccc---ccceEE
Confidence            6543211 11111  1122322 1688766442            136888887643 3302211   000   112333


Q ss_pred             -eCCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEee-eccccccCccccceEEEEEecCCCEEEE
Q 043460          248 -CKGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSIC-MDEWGNKLHVFGLTRFYNIHPNSDIIFL  324 (368)
Q Consensus       248 -~~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~  324 (368)
                       .+|+ |+++.....++.+|.++..++               .......+. +....      ....=+++..+|. +++
T Consensus       157 spdg~~lyv~~~~~~~i~~~~~d~~~G---------------~~~~~~~~~~~~~~~------~~p~g~~~d~~G~-lwv  214 (297)
T 3g4e_A          157 SLDHKIFYYIDSLSYSVDAFDYDLQTG---------------QISNRRSVYKLEKEE------QIPDGMCIDAEGK-LWV  214 (297)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEEECTTTC---------------CEEEEEEEEECCGGG------CEEEEEEEBTTSC-EEE
T ss_pred             cCCCCEEEEecCCCCcEEEEeccCCCC---------------cccCcEEEEECCCCC------CCCCeeEECCCCC-EEE
Confidence             3564 666666566666666653222               332222111 11100      1112244555665 555


Q ss_pred             e--eCCeEEEEECCCCeE-EEecc
Q 043460          325 G--SCDMIYRYHLKTNKM-ELFST  345 (368)
Q Consensus       325 ~--~~~~~~~ydl~t~~~-~~v~~  345 (368)
                      .  ....|.+||++|.+. +.+..
T Consensus       215 a~~~~~~v~~~d~~tG~~~~~i~~  238 (297)
T 3g4e_A          215 ACYNGGRVIRLDPVTGKRLQTVKL  238 (297)
T ss_dssp             EEETTTEEEEECTTTCCEEEEEEC
T ss_pred             EEcCCCEEEEEcCCCceEEEEEEC
Confidence            4  456799999997664 44443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=91.36  E-value=2.4  Score=37.01  Aligned_cols=110  Identities=7%  Similarity=-0.050  Sum_probs=70.9

Q ss_pred             ceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCC
Q 043460          198 QSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNS  276 (368)
Q Consensus       198 ~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~  276 (368)
                      +++...++.||.-++ .+.|.++|+.+++....+ +|....    ...++..+++|+++...+..  +|+.+-.      
T Consensus        58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~F----geGit~~g~~Ly~ltw~~~~--v~V~D~~------  124 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIF----AEGLASDGERLYQLTWTEGL--LFTWSGM------  124 (268)
T ss_dssp             EEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCC----EEEEEECSSCEEEEESSSCE--EEEEETT------
T ss_pred             ceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcc----eeEEEEeCCEEEEEEccCCE--EEEEECC------
Confidence            455553778888776 456999999999886456 775421    22456667889888665554  4555542      


Q ss_pred             CCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEE
Q 043460          277 HGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMEL  342 (368)
Q Consensus       277 ~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~  342 (368)
                                 .-.++.+|+...-        .   .++..++..+|.. ....+..+|++|.+...
T Consensus       125 -----------Tl~~~~ti~~~~e--------G---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~  169 (268)
T 3nok_A          125 -----------PPQRERTTRYSGE--------G---WGLCYWNGKLVRSDGGTMLTFHEPDGFALVG  169 (268)
T ss_dssp             -----------TTEEEEEEECSSC--------C---CCEEEETTEEEEECSSSEEEEECTTTCCEEE
T ss_pred             -----------cCcEEEEEeCCCc--------e---eEEecCCCEEEEECCCCEEEEEcCCCCeEEE
Confidence                       3456667764311        1   2344556777777 57789999999987643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=91.34  E-value=8.4  Score=35.13  Aligned_cols=192  Identities=11%  Similarity=0.114  Sum_probs=104.7

Q ss_pred             cCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460          102 CCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI  180 (368)
Q Consensus       102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~  180 (368)
                      +.+|-+++... ....+.+||+.+++... ++...    .....+.++|.  +.+ ++....  ....+.+|+.+++...
T Consensus       178 ~~~~~~~~s~~-~d~~v~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~-l~~~~~--~~~~i~~~d~~~~~~~  247 (433)
T 3bws_A          178 PEHNELWVSQM-QANAVHVFDLKTLAYKATVDLTG----KWSKILLYDPI--RDL-VYCSNW--ISEDISVIDRKTKLEI  247 (433)
T ss_dssp             GGGTEEEEEEG-GGTEEEEEETTTCCEEEEEECSS----SSEEEEEEETT--TTE-EEEEET--TTTEEEEEETTTTEEE
T ss_pred             cCCCEEEEEEC-CCCEEEEEECCCceEEEEEcCCC----CCeeEEEEcCC--CCE-EEEEec--CCCcEEEEECCCCcEE
Confidence            34565555543 45688899998866543 33111    12345677762  333 322221  2457889999887643


Q ss_pred             eccccCCCCCceeeeccceEEEeCCeEEEEEe---------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCC
Q 043460          181 TRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY---------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKG  250 (368)
Q Consensus       181 ~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~---------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G  250 (368)
                      ..-..  ...+..    -.+.- +|...+.+.         ++.|..+|+.+.+....+..+..      ...+. ..+|
T Consensus       248 ~~~~~--~~~~~~----~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~g  314 (433)
T 3bws_A          248 RKTDK--IGLPRG----LLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGN------KRHIVSGNTE  314 (433)
T ss_dssp             EECCC--CSEEEE----EEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEEC------EEEEEECSST
T ss_pred             EEecC--CCCceE----EEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCC------cceEEECCCC
Confidence            32210  110111    11222 554444443         35788999998876523332221      11223 3356


Q ss_pred             -eEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEeeC--
Q 043460          251 -ALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSC--  327 (368)
Q Consensus       251 -~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--  327 (368)
                       .|++....+..+.+|.++..                   ..+..++..         ....-+++.+++..+++...  
T Consensus       315 ~~l~~~~~~~~~v~v~d~~~~-------------------~~~~~~~~~---------~~~~~~~~s~dg~~l~~~~~~~  366 (433)
T 3bws_A          315 NKIYVSDMCCSKIEVYDLKEK-------------------KVQKSIPVF---------DKPNTIALSPDGKYLYVSCRGP  366 (433)
T ss_dssp             TEEEEEETTTTEEEEEETTTT-------------------EEEEEEECS---------SSEEEEEECTTSSEEEEEECCC
T ss_pred             CEEEEEecCCCEEEEEECCCC-------------------cEEEEecCC---------CCCCeEEEcCCCCEEEEEecCC
Confidence             46666667788999987642                   222333311         12344667788887877632  


Q ss_pred             --------------CeEEEEECCCCeEEEec
Q 043460          328 --------------DMIYRYHLKTNKMELFS  344 (368)
Q Consensus       328 --------------~~~~~ydl~t~~~~~v~  344 (368)
                                    +.++.+|+++.+.....
T Consensus       367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          367 NHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             CCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred             CccccccccccccceEEEEEECCCCcEEEEe
Confidence                          38999999998865543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=90.62  E-value=9.1  Score=34.30  Aligned_cols=189  Identities=14%  Similarity=0.158  Sum_probs=104.1

Q ss_pred             CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460          104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK  183 (368)
Q Consensus       104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~  183 (368)
                      +..|++... ....+.+||+.+++....-...    .....+.+.|.  +.+-++. ..  ....+.+++.+++.....-
T Consensus        85 g~~l~~~~~-~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~d--g~~l~~~-~~--~~~~v~~~d~~~~~~~~~~  154 (391)
T 1l0q_A           85 GKQVYVTNM-ASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPD--GKKLYVT-NN--GDKTVSVINTVTKAVINTV  154 (391)
T ss_dssp             SSEEEEEET-TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTT--SSEEEEE-ET--TTTEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEC-CCCEEEEEECCCCeEEEEEeCC----CCcceEEECCC--CCEEEEE-eC--CCCEEEEEECCCCcEEEEE
Confidence            334444432 4578999999998776542221    12345667762  3333222 21  3568889998887654332


Q ss_pred             ccCCCCCceeeeccceEEEeCCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeE-EEEEE--
Q 043460          184 VSVKPRRPVSFYVLQSVYSRGGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGAL-NYASR--  257 (368)
Q Consensus       184 ~~~~~~~p~~~~~~~~v~~~~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L-~~~~~--  257 (368)
                      ..  ...+...    ...- +|. +|.... ++.|..+|+.+.+....+.....      ...+.. .+|+. ++...  
T Consensus       155 ~~--~~~~~~~----~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~~~~g~~l~~~~~~~  221 (391)
T 1l0q_A          155 SV--GRSPKGI----AVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA------PSGIAVNPEGTKAYVTNVDK  221 (391)
T ss_dssp             EC--CSSEEEE----EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSE------EEEEEECTTSSEEEEEEECS
T ss_pred             ec--CCCcceE----EECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCC------ccceEECCCCCEEEEEecCc
Confidence            11  1111111    1222 454 444433 57899999999876534443211      112333 35654 44444  


Q ss_pred             CCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEEC
Q 043460          258 NQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHL  335 (368)
Q Consensus       258 ~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl  335 (368)
                      .+..+.+|-++..                   ..+..+....         ...-+.+.+++..+++.  .+..+..||+
T Consensus       222 ~~~~v~~~d~~~~-------------------~~~~~~~~~~---------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          222 YFNTVSMIDTGTN-------------------KITARIPVGP---------DPAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             SCCEEEEEETTTT-------------------EEEEEEECCS---------SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCCcEEEEECCCC-------------------eEEEEEecCC---------CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence            4678888876542                   2333443211         12335677888888776  4678999999


Q ss_pred             CCCeEEEe
Q 043460          336 KTNKMELF  343 (368)
Q Consensus       336 ~t~~~~~v  343 (368)
                      ++++....
T Consensus       274 ~~~~~~~~  281 (391)
T 1l0q_A          274 ATNTITAT  281 (391)
T ss_dssp             TTTEEEEE
T ss_pred             CCCcEEEE
Confidence            99987653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=90.55  E-value=8.2  Score=33.61  Aligned_cols=206  Identities=8%  Similarity=0.022  Sum_probs=101.8

Q ss_pred             CcEEEEeecCCCeeEEEEccc--CccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC-ce
Q 043460          104 NGLILLGSSLSKHRYYVCNPL--TKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT-WI  180 (368)
Q Consensus       104 ~Glll~~~~~~~~~~~v~NP~--T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~-W~  180 (368)
                      +..|.+... ....+.+|+.-  +++...+...+...  ....+.++|.  +.+ ++....  ....+.+|+..++. .+
T Consensus        49 g~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~d--g~~-l~~~~~--~~~~i~~~d~~~~~~~~  120 (343)
T 1ri6_A           49 KRYLYVGVR-PEFRVLAYRIAPDDGALTFAAESALPG--SLTHISTDHQ--GQF-VFVGSY--NAGNVSVTRLEDGLPVG  120 (343)
T ss_dssp             SSEEEEEET-TTTEEEEEEECTTTCCEEEEEEEECSS--CCSEEEECTT--SSE-EEEEET--TTTEEEEEEEETTEEEE
T ss_pred             CCEEEEeec-CCCeEEEEEecCCCCceeeccccccCC--CCcEEEEcCC--CCE-EEEEec--CCCeEEEEECCCCcccc
Confidence            333444432 23567776654  66665443222111  3456777773  344 222221  24467777774332 12


Q ss_pred             eccccCCCCCceeeeccceEEEeCCe-EEEEE-eCCeEEEEEcCC-CeEEEEE----eCCCCCCCCCCceeEEe-eCCe-
Q 043460          181 TRKVSVKPRRPVSFYVLQSVYSRGGI-LYNLT-YRSTILRYNIEA-LSEAEII----EVPDKNNHPCDSEVIGL-CKGA-  251 (368)
Q Consensus       181 ~~~~~~~~~~p~~~~~~~~v~~~~G~-lywl~-~~~~il~fD~~~-~~~~~~~----~lP~~~~~~~~~~~l~~-~~G~-  251 (368)
                      ..........+.    .-.+.- +|. +|... ..+.|..||+.+ .+.....    ..+..  ..  ...+.. .+|+ 
T Consensus       121 ~~~~~~~~~~~~----~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~pdg~~  191 (343)
T 1ri6_A          121 VVDVVEGLDGCH----SANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG--AG--PRHMVFHPNEQY  191 (343)
T ss_dssp             EEEEECCCTTBC----CCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT--CC--EEEEEECTTSSE
T ss_pred             ccccccCCCCce----EEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC--CC--cceEEECCCCCE
Confidence            221110000011    112222 554 55554 378899999987 6665221    22221  11  122333 3666 


Q ss_pred             EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCe
Q 043460          252 LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDM  329 (368)
Q Consensus       252 L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~  329 (368)
                      |++....+..+.+|.++...+               .+.....+..  +...........-+.+.+++..+|+.  ....
T Consensus       192 l~~~~~~~~~i~~~~~~~~~g---------------~~~~~~~~~~--~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~  254 (343)
T 1ri6_A          192 AYCVNELNSSVDVWELKDPHG---------------NIECVQTLDM--MPENFSDTRWAADIHITPDGRHLYACDRTASL  254 (343)
T ss_dssp             EEEEETTTTEEEEEESSCTTS---------------CCEEEEEEEC--SCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             EEEEeCCCCEEEEEEecCCCC---------------cEEEEeeccc--cCccccccCCccceEECCCCCEEEEEecCCCE
Confidence            555555678899999976444               5555444431  11110000123346678888888766  4578


Q ss_pred             EEEEECC--CCeEEEe
Q 043460          330 IYRYHLK--TNKMELF  343 (368)
Q Consensus       330 ~~~ydl~--t~~~~~v  343 (368)
                      +..||++  +++.+.+
T Consensus       255 i~v~d~~~~~~~~~~~  270 (343)
T 1ri6_A          255 ITVFSVSEDGSVLSKE  270 (343)
T ss_dssp             EEEEEECTTSCCEEEE
T ss_pred             EEEEEEcCCCCceEEe
Confidence            9999998  5555544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=90.50  E-value=9.9  Score=34.51  Aligned_cols=136  Identities=11%  Similarity=0.104  Sum_probs=75.3

Q ss_pred             CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460          114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS  193 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~  193 (368)
                      ....+.|||..+++...+-...  .......+.+.|.  +.+  +.+..  ....+.+|+..++.-...-....      
T Consensus       111 ~d~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~--~~~--l~~~~--~dg~i~iwd~~~~~~~~~~~~~~------  176 (401)
T 4aez_A          111 LERNVYVWNADSGSVSALAETD--ESTYVASVKWSHD--GSF--LSVGL--GNGLVDIYDVESQTKLRTMAGHQ------  176 (401)
T ss_dssp             ETTEEEEEETTTCCEEEEEECC--TTCCEEEEEECTT--SSE--EEEEE--TTSCEEEEETTTCCEEEEECCCS------
T ss_pred             CCCeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCC--CCE--EEEEC--CCCeEEEEECcCCeEEEEecCCC------
Confidence            5678999999999876654332  1123345667662  333  22222  24578899988775332211000      


Q ss_pred             eeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeEEEEEECCCeEEEEEEcc
Q 043460          194 FYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGALNYASRNQSTLLIWQLDD  269 (368)
Q Consensus       194 ~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~IW~l~~  269 (368)
                       ..-.++.. +|.+...+. ++.|..+|+.+..-. ...+.... ..  ...+... +|.+.+....+..+.||-+..
T Consensus       177 -~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~-~~--v~~~~~~~~~~~l~s~~~d~~v~iwd~~~  248 (401)
T 4aez_A          177 -ARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANHQ-IGTLQGHS-SE--VCGLAWRSDGLQLASGGNDNVVQIWDARS  248 (401)
T ss_dssp             -SCEEEEEE-ETTEEEEEETTSEEEEEETTSSSCE-EEEEECCS-SC--EEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             -CceEEEEE-CCCEEEEEcCCCCEEEEecccCcce-eeEEcCCC-CC--eeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence             01114555 555444444 788999999854332 22221111 11  1223333 677777777788999998876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=90.40  E-value=8.7  Score=33.70  Aligned_cols=204  Identities=9%  Similarity=0.035  Sum_probs=109.3

Q ss_pred             EEecCCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCC-----CCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEE
Q 043460           99 LIDCCNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDV-----LASPPALAFHPCDSSHYKIIRFLRARMDPEVDIF  172 (368)
Q Consensus        99 ~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~-----~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vy  172 (368)
                      .++..++.+++... ....+.++|+.|++... ++......     .....++.++|.  +++ ++.... .....+.++
T Consensus        95 ~~s~dg~~l~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~-l~~~~~-~~~~~i~~~  169 (353)
T 3vgz_A           95 TINNTTQTLWFGNT-VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDA--TNT-VYISGI-GKESVIWVV  169 (353)
T ss_dssp             EEETTTTEEEEEET-TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETT--TTE-EEEEEE-SSSCEEEEE
T ss_pred             EECCCCCEEEEEec-CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCC--CCE-EEEEec-CCCceEEEE
Confidence            34444555555543 45689999999988643 33321110     111345777773  344 332221 124568889


Q ss_pred             eCCCCCceeccccCCCCCceeeeccceEEEeCCe-EEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CC
Q 043460          173 SSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGI-LYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KG  250 (368)
Q Consensus       173 ss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~-lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G  250 (368)
                      +.+++.=...-.. ....|.    .-.+.- +|. +|.....+.|..+|+.+.+....+..+...... ....+... +|
T Consensus       170 d~~~~~~~~~~~~-~~~~~~----~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg  242 (353)
T 3vgz_A          170 DGGNIKLKTAIQN-TGKMST----GLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEH-FFINISLDTAR  242 (353)
T ss_dssp             ETTTTEEEEEECC-CCTTCC----CCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCC-CEEEEEEETTT
T ss_pred             cCCCCceEEEecC-CCCccc----eEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCc-ccceEEECCCC
Confidence            9887653222110 000011    112333 454 555544778999999998776455654321111 01223333 55


Q ss_pred             e-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eC
Q 043460          251 A-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SC  327 (368)
Q Consensus       251 ~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~  327 (368)
                      + |++.......+.+|-++.  .               +  .+..+....   .       .-+.+.++++.+|+.  ..
T Consensus       243 ~~l~~~~~~~~~v~~~d~~~--~---------------~--~~~~~~~~~---~-------~~~~~s~dg~~l~v~~~~~  293 (353)
T 3vgz_A          243 QRAFITDSKAAEVLVVDTRN--G---------------N--ILAKVAAPE---S-------LAVLFNPARNEAYVTHRQA  293 (353)
T ss_dssp             TEEEEEESSSSEEEEEETTT--C---------------C--EEEEEECSS---C-------CCEEEETTTTEEEEEETTT
T ss_pred             CEEEEEeCCCCEEEEEECCC--C---------------c--EEEEEEcCC---C-------ceEEECCCCCEEEEEECCC
Confidence            4 655555567788776543  2               2  223333211   1       115678888877776  46


Q ss_pred             CeEEEEECCCCeEEEe
Q 043460          328 DMIYRYHLKTNKMELF  343 (368)
Q Consensus       328 ~~~~~ydl~t~~~~~v  343 (368)
                      ..+..+|+++.+....
T Consensus       294 ~~v~~~d~~~~~~~~~  309 (353)
T 3vgz_A          294 GKVSVIDAKSYKVVKT  309 (353)
T ss_dssp             TEEEEEETTTTEEEEE
T ss_pred             CeEEEEECCCCeEEEE
Confidence            7899999999886543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=90.00  E-value=9.7  Score=33.63  Aligned_cols=189  Identities=11%  Similarity=0.056  Sum_probs=98.5

Q ss_pred             CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460          114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS  193 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~  193 (368)
                      ....+.|||..++....+-.... .......+.+.+. ...-.++...   ....+.+|+..++.|...........+. 
T Consensus        31 ~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~-~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~v-  104 (379)
T 3jrp_A           31 SDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHP-KFGTILASCS---YDGKVLIWKEENGRWSQIAVHAVHSASV-  104 (379)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCG-GGCSEEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCE-
T ss_pred             CCCcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCC-CCCCEEEEec---cCCEEEEEEcCCCceeEeeeecCCCcce-
Confidence            45577888876333322211110 1112334555542 1122233222   2456889999888876654321111011 


Q ss_pred             eeccceEEEe-C--CeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--------------CCeEEEE
Q 043460          194 FYVLQSVYSR-G--GILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--------------KGALNYA  255 (368)
Q Consensus       194 ~~~~~~v~~~-~--G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--------------~G~L~~~  255 (368)
                          .++.+. +  |.+...+. ++.|..+|+.+..-.....+......   ...+...              +|.+.++
T Consensus       105 ----~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~l~~  177 (379)
T 3jrp_A          105 ----NSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG---VNSASWAPATIEEDGEHNGTKESRKFVT  177 (379)
T ss_dssp             ----EEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC---EEEEEECCCC----------CTTCEEEE
T ss_pred             ----EEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc---eEEEEEcCccccccccccCCCCCCEEEE
Confidence                122220 2  44444444 77889999888632212222111110   1122222              5788778


Q ss_pred             EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecC---CCEEEEe-eCCeEE
Q 043460          256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPN---SDIIFLG-SCDMIY  331 (368)
Q Consensus       256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~-~~~~~~  331 (368)
                      ...+..+.||-+.....               .|.....+....        ..+.-+.+.++   +..++.. .+..+.
T Consensus       178 ~~~dg~i~i~d~~~~~~---------------~~~~~~~~~~h~--------~~v~~~~~sp~~~~~~~l~s~~~dg~i~  234 (379)
T 3jrp_A          178 GGADNLVKIWKYNSDAQ---------------TYVLESTLEGHS--------DWVRDVAWSPTVLLRSYLASVSQDRTCI  234 (379)
T ss_dssp             EETTSCEEEEEEETTTT---------------EEEEEEEECCCS--------SCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred             EeCCCeEEEEEecCCCc---------------ceeeEEEEeccc--------CcEeEEEECCCCCCCCeEEEEeCCCEEE
Confidence            88888999999987655               677766654211        22344566776   5555555 466788


Q ss_pred             EEECCCC
Q 043460          332 RYHLKTN  338 (368)
Q Consensus       332 ~ydl~t~  338 (368)
                      .||+++.
T Consensus       235 iwd~~~~  241 (379)
T 3jrp_A          235 IWTQDNE  241 (379)
T ss_dssp             EEEESST
T ss_pred             EEeCCCC
Confidence            8998886

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=89.66  E-value=11  Score=33.75  Aligned_cols=198  Identities=8%  Similarity=-0.021  Sum_probs=100.6

Q ss_pred             cCCcEEEEeecCCCeeEEEEcccCccceecCCCCc-CCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460          102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKARE-DVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI  180 (368)
Q Consensus       102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~-~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~  180 (368)
                      +.++.++...  ....+.|||..+++......... .+......+.+.|.  +.+ ++. ..  ....+.+++.+++.-.
T Consensus        91 s~d~~l~~~s--~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~-l~s-gs--~d~~i~iwd~~~~~~~  162 (344)
T 4gqb_B           91 VGERGILVAS--DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQ-AVS-GS--KDICIKVWDLAQQVVL  162 (344)
T ss_dssp             ETTTEEEEEE--TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSE-EEE-EE--TTSCEEEEETTTTEEE
T ss_pred             eCCCeEEEEE--CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC--CCE-EEE-Ee--CCCeEEEEECCCCcEE
Confidence            3456666554  66789999999987655433221 12223445667662  233 222 22  2456888888876422


Q ss_pred             eccccCCCCCceeeeccceEEE-eCCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEE
Q 043460          181 TRKVSVKPRRPVSFYVLQSVYS-RGGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYA  255 (368)
Q Consensus       181 ~~~~~~~~~~p~~~~~~~~v~~-~~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~  255 (368)
                      ..-.....  +.     .++.+ .+|. +..-+. ++.|..+|+.+.+-...+..+.....   ...+...  ++.+.+.
T Consensus       163 ~~~~~h~~--~V-----~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~p~~~~~l~s  232 (344)
T 4gqb_B          163 SSYRAHAA--QV-----TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYL---PTSLAWHPQQSEVFVF  232 (344)
T ss_dssp             EEECCCSS--CE-----EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCC---EEEEEECSSCTTEEEE
T ss_pred             EEEcCcCC--ce-----EEEEecCCCCCceeeeccccccccccccccceeeeeecceeecc---ceeeeecCCCCcceEE
Confidence            11100000  00     01221 0332 333333 67899999988765423332221111   1223322  4567777


Q ss_pred             EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCC-EEEEe-eCCeEEEE
Q 043460          256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSD-IIFLG-SCDMIYRY  333 (368)
Q Consensus       256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~~~~~~y  333 (368)
                      ...+..+.||-+...+.                   +.++....        ..+.-+.+.+++. +|.-. .+..+..+
T Consensus       233 g~~dg~v~~wd~~~~~~-------------------~~~~~~h~--------~~v~~v~fsp~g~~~lasgs~D~~i~vw  285 (344)
T 4gqb_B          233 GDENGTVSLVDTKSTSC-------------------VLSSAVHS--------QCVTGLVFSPHSVPFLASLSEDCSLAVL  285 (344)
T ss_dssp             EETTSEEEEEESCC--C-------------------CEEEECCS--------SCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred             eccCCcEEEEECCCCcE-------------------EEEEcCCC--------CCEEEEEEccCCCeEEEEEeCCCeEEEE
Confidence            77788999997665321                   12222110        2234456677664 33333 55678888


Q ss_pred             ECCCCeEEEec
Q 043460          334 HLKTNKMELFS  344 (368)
Q Consensus       334 dl~t~~~~~v~  344 (368)
                      |+++++..++.
T Consensus       286 d~~~~~~~~~~  296 (344)
T 4gqb_B          286 DSSLSELFRSQ  296 (344)
T ss_dssp             CTTCCEEEEEC
T ss_pred             ECCCCcEEEEc
Confidence            99888876543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=89.49  E-value=16  Score=35.27  Aligned_cols=203  Identities=10%  Similarity=0.053  Sum_probs=107.0

Q ss_pred             EEEEeecCCCeeEEEEcccCcccee-cCCCC--cC-----CCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCC
Q 043460          106 LILLGSSLSKHRYYVCNPLTKQCVA-IPKAR--ED-----VLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENK  177 (368)
Q Consensus       106 lll~~~~~~~~~~~v~NP~T~~~~~-lP~~~--~~-----~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~  177 (368)
                      +|.+... ....+.|||..|++... ++-..  ..     ......++.+.|.  +.+-++...   ..-.+.+++..++
T Consensus       239 ~l~v~~~-~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~--~~~~~vs~~---~~g~i~vvd~~~~  312 (543)
T 1nir_A          239 YTIAGAY-WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE--HPEFIVNVK---ETGKVLLVNYKDI  312 (543)
T ss_dssp             EEEEEEE-ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS--SSEEEEEET---TTTEEEEEECTTS
T ss_pred             EEEEEEc-cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC--CCEEEEEEC---CCCeEEEEEecCC
Confidence            4444432 35678888888877554 23211  00     0012234455542  333333322   3456777777664


Q ss_pred             CceeccccCCCCCceeeeccceEEEeCCeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeC-CeEEE
Q 043460          178 TWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCK-GALNY  254 (368)
Q Consensus       178 ~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~-G~L~~  254 (368)
                      .--..........|..    -+..- +|...+.+.  .+.|.++|..+.+....++........ ....+...+ |.+++
T Consensus       313 ~~l~~~~i~~~~~~~~----~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g-~g~~~~~p~~g~~~~  386 (543)
T 1nir_A          313 DNLTVTSIGAAPFLHD----GGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG-RGANFVHPKYGPVWS  386 (543)
T ss_dssp             SSCEEEEEECCSSCCC----EEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCT-TCEEEEETTTEEEEE
T ss_pred             CcceeEEeccCcCccC----ceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCC-CCcccCCCCCccEEE
Confidence            3211100000000111    12222 566333333  678999999998876455542211110 012222334 66655


Q ss_pred             EEE-CCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee-------
Q 043460          255 ASR-NQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS-------  326 (368)
Q Consensus       255 ~~~-~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------  326 (368)
                      ... .+.++.+|-++..+.            ....|..+.++....-        ....+.+++++..++...       
T Consensus       387 s~~~~d~~V~v~d~~~~~~------------~~~~~~~v~~l~~~g~--------~~~~v~~~pdg~~l~v~~~~~~~~~  446 (543)
T 1nir_A          387 TSHLGDGSISLIGTDPKNH------------PQYAWKKVAELQGQGG--------GSLFIKTHPKSSHLYVDTTFNPDAR  446 (543)
T ss_dssp             EEBSSSSEEEEEECCTTTC------------TTTBTSEEEEEECSCS--------CCCCEECCTTCCEEEECCTTCSSHH
T ss_pred             eccCCCceEEEEEeCCCCC------------chhcCeEEEEEEcCCC--------CceEEEcCCCCCcEEEecCCCCCcc
Confidence            554 567999999876421            1116999988874321        123367899999999873       


Q ss_pred             -CCeEEEEECCCCeE
Q 043460          327 -CDMIYRYHLKTNKM  340 (368)
Q Consensus       327 -~~~~~~ydl~t~~~  340 (368)
                       ...+..||.+|.+.
T Consensus       447 ~~~~v~v~d~~~~~~  461 (543)
T 1nir_A          447 ISQSVAVFDLKNLDA  461 (543)
T ss_dssp             HHTCEEEEETTCTTS
T ss_pred             cCceEEEEECCCCCC
Confidence             55899999998874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=89.34  E-value=11  Score=33.11  Aligned_cols=204  Identities=10%  Similarity=0.051  Sum_probs=103.3

Q ss_pred             cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC--CCcEEEEEeCCCCCc
Q 043460          102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR--MDPEVDIFSSENKTW  179 (368)
Q Consensus       102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~--~~~~~~vyss~~~~W  179 (368)
                      +.+|-|++... ....++++||.+++...+....   .....++.+++.  +.  ++......  ....+.+|+.+++.-
T Consensus        53 ~~~g~l~~~~~-~~~~i~~~d~~~~~~~~~~~~~---~~~~~~i~~~~d--g~--l~v~~~~~~~~~~~i~~~d~~~~~~  124 (333)
T 2dg1_A           53 DRQGQLFLLDV-FEGNIFKINPETKEIKRPFVSH---KANPAAIKIHKD--GR--LFVCYLGDFKSTGGIFAATENGDNL  124 (333)
T ss_dssp             CTTSCEEEEET-TTCEEEEECTTTCCEEEEEECS---SSSEEEEEECTT--SC--EEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CCCCCEEEEEC-CCCEEEEEeCCCCcEEEEeeCC---CCCcceEEECCC--Cc--EEEEeCCCCCCCceEEEEeCCCCEE
Confidence            34666655443 4568999999999877653211   113446777762  22  33222110  114678888887765


Q ss_pred             eeccccCCCCCceeeeccceEEE-eCCeEEEEEe-------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCC
Q 043460          180 ITRKVSVKPRRPVSFYVLQSVYS-RGGILYNLTY-------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKG  250 (368)
Q Consensus       180 ~~~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~-------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G  250 (368)
                      +........   ..  .-..+.+ .+|.+|+...       ...|..+|+.+.+.. .+.-.  ...   ...++. .+|
T Consensus       125 ~~~~~~~~~---~~--~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~--~~~---~~~i~~~~dg  193 (333)
T 2dg1_A          125 QDIIEDLST---AY--CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQN--ISV---ANGIALSTDE  193 (333)
T ss_dssp             EEEECSSSS---CC--CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEE--ESS---EEEEEECTTS
T ss_pred             EEEEccCcc---CC--cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecC--CCc---ccceEECCCC
Confidence            422110010   00  0112222 1677766553       257999999887766 33211  000   112333 366


Q ss_pred             e-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEE-EeeeccccccCccccceEEEEEecCCCEEEEe--e
Q 043460          251 A-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKH-SICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--S  326 (368)
Q Consensus       251 ~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~  326 (368)
                      + |++.......+.+|.++..+.               ...... .+... +...    ....-+.+.+++. +++.  .
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~---------------~~~~~~~~~~~~-~~~~----~~~~~i~~d~~G~-l~v~~~~  252 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGV---------------TIQPFGATIPYY-FTGH----EGPDSCCIDSDDN-LYVAMYG  252 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSS---------------SEEEEEEEEEEE-CCSS----SEEEEEEEBTTCC-EEEEEET
T ss_pred             CEEEEEeCCCCeEEEEEecCCCc---------------CcccccceEEEe-cCCC----CCCCceEECCCCC-EEEEEcC
Confidence            5 666655556777777754322               222211 11111 1100    1122345666666 4444  3


Q ss_pred             CCeEEEEECCCCeEEEecc
Q 043460          327 CDMIYRYHLKTNKMELFST  345 (368)
Q Consensus       327 ~~~~~~ydl~t~~~~~v~~  345 (368)
                      ...+.+||++.+.++.+..
T Consensus       253 ~~~v~~~d~~g~~~~~~~~  271 (333)
T 2dg1_A          253 QGRVLVFNKRGYPIGQILI  271 (333)
T ss_dssp             TTEEEEECTTSCEEEEEEC
T ss_pred             CCEEEEECCCCCEEEEEEc
Confidence            5689999998777776654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=89.33  E-value=12  Score=33.57  Aligned_cols=192  Identities=8%  Similarity=0.014  Sum_probs=103.9

Q ss_pred             EEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecccc
Q 043460          106 LILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVS  185 (368)
Q Consensus       106 lll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~  185 (368)
                      +|+...  ....+.|||..+++....-.... .......+.+.|.   +-+.+....  ....+.+++.+++........
T Consensus        88 ~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~---~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~  159 (383)
T 3ei3_B           88 TVAVGS--KGGDIILWDYDVQNKTSFIQGMG-PGDAITGMKFNQF---NTNQLFVSS--IRGATTLRDFSGSVIQVFAKT  159 (383)
T ss_dssp             EEEEEE--BTSCEEEEETTSTTCEEEECCCS-TTCBEEEEEEETT---EEEEEEEEE--TTTEEEEEETTSCEEEEEECC
T ss_pred             EEEEEc--CCCeEEEEeCCCcccceeeecCC-cCCceeEEEeCCC---CCCEEEEEe--CCCEEEEEECCCCceEEEecc
Confidence            444443  46688999999887665432210 1122345566551   222333332  356788898886554443321


Q ss_pred             CCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCe-EEEEEECCCeE
Q 043460          186 VKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGA-LNYASRNQSTL  262 (368)
Q Consensus       186 ~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~-L~~~~~~~~~~  262 (368)
                      ....   .....-...- +|.....+. ++.|..+|+..+... .+......     ...+.. .+|. +.+....+..+
T Consensus       160 ~~~~---~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~h~~~-----v~~~~~~~~~~~~l~s~~~d~~i  229 (383)
T 3ei3_B          160 DSWD---YWYCCVDVSV-SRQMLATGDSTGRLLLLGLDGHEIF-KEKLHKAK-----VTHAEFNPRCDWLMATSSVDATV  229 (383)
T ss_dssp             CCSS---CCEEEEEEET-TTTEEEEEETTSEEEEEETTSCEEE-EEECSSSC-----EEEEEECSSCTTEEEEEETTSEE
T ss_pred             CCCC---CCeEEEEECC-CCCEEEEECCCCCEEEEECCCCEEE-EeccCCCc-----EEEEEECCCCCCEEEEEeCCCEE
Confidence            1000   0001112222 455444444 788999999766555 44432211     123333 3566 77777788899


Q ss_pred             EEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEec-CCCEEEEe-eCCeEEEEECCCCe
Q 043460          263 LIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHP-NSDIIFLG-SCDMIYRYHLKTNK  339 (368)
Q Consensus       263 ~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~~~~ydl~t~~  339 (368)
                      .||-+...+.               .-..+..+...         ..+.-+.+.+ ++..++.. .+..+..||+++.+
T Consensus       230 ~iwd~~~~~~---------------~~~~~~~~~~~---------~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          230 KLWDLRNIKD---------------KNSYIAEMPHE---------KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             EEEEGGGCCS---------------TTCEEEEEECS---------SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred             EEEeCCCCCc---------------ccceEEEecCC---------CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence            9999987532               22233333211         2344466777 77777666 56789999998765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=89.02  E-value=13  Score=33.78  Aligned_cols=193  Identities=14%  Similarity=0.086  Sum_probs=100.6

Q ss_pred             CcEEEEeecCCCeeEEEEcccCccceecCCCCc--CCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460          104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKARE--DVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT  181 (368)
Q Consensus       104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~--~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~  181 (368)
                      +|.+++... ....+.+||+.+++.....+...  ........+.+.+.   . +++....  ....+.+|+.+++.-..
T Consensus       133 ~~~~~~~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~~~s~~--~d~~v~~~d~~~~~~~~  205 (433)
T 3bws_A          133 NTRLAIPLL-EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH---N-ELWVSQM--QANAVHVFDLKTLAYKA  205 (433)
T ss_dssp             SSEEEEEBT-TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG---T-EEEEEEG--GGTEEEEEETTTCCEEE
T ss_pred             CCeEEEEeC-CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC---C-EEEEEEC--CCCEEEEEECCCceEEE
Confidence            676666653 55679999999998776433321  11112234555441   2 2333332  24678899988765432


Q ss_pred             ccccCCCCCceeeeccceEEEeCCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCe-EEEEEE
Q 043460          182 RKVSVKPRRPVSFYVLQSVYSRGGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGA-LNYASR  257 (368)
Q Consensus       182 ~~~~~~~~~p~~~~~~~~v~~~~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~-L~~~~~  257 (368)
                      .-.... ..+..    -...- +|. +|.... ++.|..+|+.+.+....++....      ...+.. .+|+ |++...
T Consensus       206 ~~~~~~-~~~~~----~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          206 TVDLTG-KWSKI----LLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL------PRGLLLSKDGKELYIAQF  273 (433)
T ss_dssp             EEECSS-SSEEE----EEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSE------EEEEEECTTSSEEEEEEE
T ss_pred             EEcCCC-CCeeE----EEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCC------ceEEEEcCCCCEEEEEEC
Confidence            211000 00111    11222 443 555543 68899999988766523322111      122333 3564 444443


Q ss_pred             -------CCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCC
Q 043460          258 -------NQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCD  328 (368)
Q Consensus       258 -------~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~  328 (368)
                             .+..+.+|-+...                 +  .+..+....         ...-+.+.++++.+++.  .+.
T Consensus       274 ~~~~~~~~dg~i~~~d~~~~-----------------~--~~~~~~~~~---------~~~~~~~~~~g~~l~~~~~~~~  325 (433)
T 3bws_A          274 SASNQESGGGRLGIYSMDKE-----------------K--LIDTIGPPG---------NKRHIVSGNTENKIYVSDMCCS  325 (433)
T ss_dssp             ESCTTCSCCEEEEEEETTTT-----------------E--EEEEEEEEE---------CEEEEEECSSTTEEEEEETTTT
T ss_pred             CCCccccCCCeEEEEECCCC-----------------c--EEeeccCCC---------CcceEEECCCCCEEEEEecCCC
Confidence                   2346778876642                 1  112222111         12335667777767665  567


Q ss_pred             eEEEEECCCCeEEEe
Q 043460          329 MIYRYHLKTNKMELF  343 (368)
Q Consensus       329 ~~~~ydl~t~~~~~v  343 (368)
                      .+..||+++++....
T Consensus       326 ~v~v~d~~~~~~~~~  340 (433)
T 3bws_A          326 KIEVYDLKEKKVQKS  340 (433)
T ss_dssp             EEEEEETTTTEEEEE
T ss_pred             EEEEEECCCCcEEEE
Confidence            899999998876543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=88.64  E-value=12  Score=32.82  Aligned_cols=192  Identities=14%  Similarity=0.078  Sum_probs=95.3

Q ss_pred             CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc----------
Q 043460          114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK----------  183 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~----------  183 (368)
                      ....+.+||..+++....-............+.+.|.  +.+ ++...   ....+.+|+.+++.-...-          
T Consensus       136 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~-l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  209 (366)
T 3k26_A          136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL--GEK-IMSCG---MDHSLKLWRINSKRMMNAIKESYDYNPNK  209 (366)
T ss_dssp             TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT--SSE-EEEEE---TTSCEEEEESCSHHHHHHHHHHHTCCGGG
T ss_pred             CCCeEEEEEeecCeEEEEecccccccCceeEEEECCC--CCE-EEEec---CCCCEEEEECCCCccccccceeEEecCCC
Confidence            5667889998887655432110111223445667762  232 33222   2457889998875421100          


Q ss_pred             ccCCCCC-----c-eee---ecc--ceEEEeCCeEEEEEe-CCeEEEEEcCCCeE------------E--EEEeCCCCCC
Q 043460          184 VSVKPRR-----P-VSF---YVL--QSVYSRGGILYNLTY-RSTILRYNIEALSE------------A--EIIEVPDKNN  237 (368)
Q Consensus       184 ~~~~~~~-----p-~~~---~~~--~~v~~~~G~lywl~~-~~~il~fD~~~~~~------------~--~~~~lP~~~~  237 (368)
                      .......     + ...   ...  .++.. .|.+...+. ++.|..+|+.+..-            .  .....+....
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  288 (366)
T 3k26_A          210 TNRPFISQKIHFPDFSTRDIHRNYVDCVRW-LGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI  288 (366)
T ss_dssp             CSSCCCCEEECCCSEEECSSCSSCCCEEEE-ETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS
T ss_pred             CcccccceeeccCccccccCCcceEEEEEE-cCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE
Confidence            0000000     0 000   111  14555 455333333 78899999887533            1  0111111110


Q ss_pred             CCCCceeEEeeC--CeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEE
Q 043460          238 HPCDSEVIGLCK--GALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNI  315 (368)
Q Consensus       238 ~~~~~~~l~~~~--G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~  315 (368)
                          .......+  |.+.++...+..+.||.++....               .......+....-.      ..+.-+.+
T Consensus       289 ----~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~---------------~~~~~~~~~~~~~~------~~v~~~~~  343 (366)
T 3k26_A          289 ----WYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP---------------HKAKCTTLTHHKCG------AAIRQTSF  343 (366)
T ss_dssp             ----SCCCCEECTTSSEEEEECTTSCEEEEECCSSSG---------------GGCEEEEECCTTCC------SCEEEEEE
T ss_pred             ----EEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC---------------ccccceEEcccccC------CceEEEEe
Confidence                01111234  77777777788999999887532               22233333321101      23445667


Q ss_pred             ecCCCEEEEe-eCCeEEEEECCC
Q 043460          316 HPNSDIIFLG-SCDMIYRYHLKT  337 (368)
Q Consensus       316 ~~~~~~v~~~-~~~~~~~ydl~t  337 (368)
                      .+++..++.. .++.+..||+.|
T Consensus       344 s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          344 SRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCCCCeEEEEeCCCEEEEEEecC
Confidence            7788877766 566888998864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=88.46  E-value=12  Score=32.68  Aligned_cols=204  Identities=10%  Similarity=0.045  Sum_probs=96.7

Q ss_pred             CCeeEEEEcccCcc--ceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCc
Q 043460          114 SKHRYYVCNPLTKQ--CVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRP  191 (368)
Q Consensus       114 ~~~~~~v~NP~T~~--~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p  191 (368)
                      ....+.+||..+++  ...+.............+.+.+.-+.+-+.+....  ....+.+|+.+++.=..... .. . +
T Consensus       137 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~-~~-~-~  211 (357)
T 3i2n_A          137 RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY--DNGDIKLFDLRNMALRWETN-IK-N-G  211 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE--TTSEEEEEETTTTEEEEEEE-CS-S-C
T ss_pred             CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc--cCCeEEEEECccCceeeecC-CC-C-c
Confidence            56788999998876  33333322111112223343221122223333333  24578999988875322110 00 0 0


Q ss_pred             eeeeccceEEEe----CCeEEEEEe-CCeEEEEEcCCCeEEEEEe---CCCCCCCCCCceeEEee-CCe-EEEEEECCCe
Q 043460          192 VSFYVLQSVYSR----GGILYNLTY-RSTILRYNIEALSEAEIIE---VPDKNNHPCDSEVIGLC-KGA-LNYASRNQST  261 (368)
Q Consensus       192 ~~~~~~~~v~~~----~G~lywl~~-~~~il~fD~~~~~~~~~~~---lP~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~  261 (368)
                      .     .++.+.    +|.....+. ++.|..+|+.+.+....+.   +.... ..  ...+... +|. +.+....+..
T Consensus       212 v-----~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~--v~~~~~~~~~~~~l~~~~~dg~  283 (357)
T 3i2n_A          212 V-----CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHK-ST--VWQVRHLPQNRELFLTAGGAGG  283 (357)
T ss_dssp             E-----EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCS-SC--EEEEEEETTEEEEEEEEETTSE
T ss_pred             e-----EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCc-CC--EEEEEECCCCCcEEEEEeCCCc
Confidence            0     123331    233333333 7788888887654321111   11111 11  2233333 566 6666667889


Q ss_pred             EEEEEEccCCCCCCCCCCc-cCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEE-e-eCCeEEEEECCCC
Q 043460          262 LLIWQLDDHRHHSNSHGSN-KAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFL-G-SCDMIYRYHLKTN  338 (368)
Q Consensus       262 ~~IW~l~~~~~~~~~~~~~-~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~~~~ydl~t~  338 (368)
                      +.||.+....... ....+ ...+....+..+..+....        ..+.-+++.+++..+++ . .+..+..||+++.
T Consensus       284 i~iwd~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          284 LHLWKYEYPIQRS-KKDSEGIEMGVAGSVSLLQNVTLST--------QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEEEEEECCSCC---CCTTSCCCCCCCEEEEEEEEECCS--------SCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             EEEeecCCCcccc-cccCCCCccccccccceeeccccCC--------CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            9999998642100 00000 0011112455555544211        23444667788777764 3 5678999998764


Q ss_pred             e
Q 043460          339 K  339 (368)
Q Consensus       339 ~  339 (368)
                      +
T Consensus       355 ~  355 (357)
T 3i2n_A          355 N  355 (357)
T ss_dssp             -
T ss_pred             c
Confidence            3

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=87.93  E-value=16  Score=33.53  Aligned_cols=183  Identities=10%  Similarity=0.033  Sum_probs=96.9

Q ss_pred             eeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeee
Q 043460          116 HRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFY  195 (368)
Q Consensus       116 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~  195 (368)
                      ..+++||..|++.+.+...+.    ....+.+.|.  +.+ ++..........+.+++.+++..+..... . ...... 
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~~----~~~~~~~spd--g~~-la~~~~~~g~~~i~~~d~~~~~~~~l~~~-~-~~~~~~-  272 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFPR----HNGAPAFSPD--GSK-LAFALSKTGSLNLYVMDLASGQIRQVTDG-R-SNNTEP-  272 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCSS----CEEEEEECTT--SSE-EEEEECTTSSCEEEEEETTTCCEEECCCC-S-SCEEEE-
T ss_pred             cEEEEEECCCCcEEEeecCCC----cccCEEEcCC--CCE-EEEEEecCCCceEEEEECCCCCEEeCcCC-C-Ccccce-
Confidence            589999999998877654331    2335566662  333 33232222456788889988876544311 0 000010 


Q ss_pred             ccceEEEeCCe-EEEEEeC---CeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCe-EEEEEECCCeEEEEEEcc
Q 043460          196 VLQSVYSRGGI-LYNLTYR---STILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGA-LNYASRNQSTLLIWQLDD  269 (368)
Q Consensus       196 ~~~~v~~~~G~-lywl~~~---~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~-L~~~~~~~~~~~IW~l~~  269 (368)
                         ...- +|. |+.....   ..|..+|+.+.+.. .+....   ..  ...+.. .+|+ |++...++....|+.++-
T Consensus       273 ---~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~---~~--~~~~~~spdG~~l~~~~~~~g~~~i~~~d~  342 (415)
T 2hqs_A          273 ---TWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG---SQ--NQDADVSSDGKFMVMVSSNGGQQHIAKQDL  342 (415)
T ss_dssp             ---EECT-TSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS---SE--EEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred             ---EECC-CCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCC---Cc--ccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence               1111 454 5544432   26888899887755 332211   10  112232 3665 444444433444444444


Q ss_pred             CCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCC---eEEEEECCCCeEEEecc
Q 043460          270 HRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCD---MIYRYHLKTNKMELFST  345 (368)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~---~~~~ydl~t~~~~~v~~  345 (368)
                      .++               +...   +....         ...-+.+.+++..|++. ...   .++.+|+++++.+++..
T Consensus       343 ~~~---------------~~~~---l~~~~---------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~  395 (415)
T 2hqs_A          343 ATG---------------GVQV---LSSTF---------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA  395 (415)
T ss_dssp             TTC---------------CEEE---CCCSS---------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred             CCC---------------CEEE---ecCCC---------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC
Confidence            323               3321   21111         12335678888877665 333   79999999999888876

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=87.69  E-value=16  Score=33.05  Aligned_cols=94  Identities=10%  Similarity=0.091  Sum_probs=51.0

Q ss_pred             CcEEEEEeCCCCCceeccccCCCCCceeeeccceEEE-eCCe-EEEEEe-CCeEEEEEcCCCeE--EEEEeCCCCCCCCC
Q 043460          166 DPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYS-RGGI-LYNLTY-RSTILRYNIEALSE--AEIIEVPDKNNHPC  240 (368)
Q Consensus       166 ~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~-~~G~-lywl~~-~~~il~fD~~~~~~--~~~~~lP~~~~~~~  240 (368)
                      ...+.+|+.+++.-.....  ...   . ..-.++.+ .+|. +...+. ++.|..+|+.+.+-  . .+.....  .. 
T Consensus       268 dg~i~i~d~~~~~~~~~~~--~~~---~-~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~~--~~-  337 (420)
T 3vl1_A          268 SGVITVHNVFSKEQTIQLP--SKF---T-CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG-EFLINEG--TP-  337 (420)
T ss_dssp             TSCEEEEETTTCCEEEEEC--CTT---S-SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE-EEEESTT--SC-
T ss_pred             CCeEEEEECCCCceeEEcc--ccc---C-CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh-hhhccCC--CC-
Confidence            4568899988765322210  000   0 00012222 0343 333333 78899999988643  3 3332211  11 


Q ss_pred             CceeEEeeCCeEEEEEECCCeEEEEEEccC
Q 043460          241 DSEVIGLCKGALNYASRNQSTLLIWQLDDH  270 (368)
Q Consensus       241 ~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~  270 (368)
                       ...+...+|.+.+....+..+.||.+...
T Consensus       338 -v~~~~~~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          338 -INNVYFAAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             -EEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred             -ceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence             22445568887766667889999999875

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=87.53  E-value=14  Score=35.59  Aligned_cols=146  Identities=8%  Similarity=-0.032  Sum_probs=80.0

Q ss_pred             CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460          104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK  183 (368)
Q Consensus       104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~  183 (368)
                      +++++...  ......+||..|++.+.+...+.      ....++|  .+.+-+...........+.+++.+++.++...
T Consensus       122 ~~~~~~s~--~~~~~~l~d~~~g~~~~l~~~~~------~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~  191 (582)
T 3o4h_A          122 EAVVFTGA--TEDRVALYALDGGGLRELARLPG------FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  191 (582)
T ss_dssp             SCEEEEEE--CSSCEEEEEEETTEEEEEEEESS------CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCEEEC
T ss_pred             CeEEEEec--CCCCceEEEccCCcEEEeecCCC------ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCceEee
Confidence            45666654  34455699999998887754331      4556666  23443333332223356888898899887654


Q ss_pred             ccCCCCCceeeeccceEEEeCCeEEEEEe-CC--eEEEEEcCCCeEEEEEeCCCCCCCCCC---ceeE-EeeCCeEEEEE
Q 043460          184 VSVKPRRPVSFYVLQSVYSRGGILYNLTY-RS--TILRYNIEALSEAEIIEVPDKNNHPCD---SEVI-GLCKGALNYAS  256 (368)
Q Consensus       184 ~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~--~il~fD~~~~~~~~~~~lP~~~~~~~~---~~~l-~~~~G~L~~~~  256 (368)
                      ..  .    .....-...= ||...+... .+  .|..+|+.+.+.. .+.-.........   .... ...+|.+++..
T Consensus       192 ~~--~----~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~  263 (582)
T 3o4h_A          192 SG--E----GSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVA  263 (582)
T ss_dssp             CS--S----CEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEE
T ss_pred             cC--C----CccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEE
Confidence            21  1    1111111222 666444443 34  7999999988776 4322111000000   0000 23478777777


Q ss_pred             ECCCeEEEEEE
Q 043460          257 RNQSTLLIWQL  267 (368)
Q Consensus       257 ~~~~~~~IW~l  267 (368)
                      ..+.+..||.+
T Consensus       264 ~~~g~~~l~~~  274 (582)
T 3o4h_A          264 RREGRSAVFID  274 (582)
T ss_dssp             EETTEEEEEET
T ss_pred             EcCCcEEEEEE
Confidence            77778999998

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=87.04  E-value=14  Score=31.89  Aligned_cols=188  Identities=15%  Similarity=0.083  Sum_probs=100.3

Q ss_pred             CCcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC--c
Q 043460          103 CNGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT--W  179 (368)
Q Consensus       103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~--W  179 (368)
                      ..|-+++... ....++++|+.|++..+ ++....   .........|.  ++  ++..    ....+..|+. +|.  |
T Consensus         3 ~~~~~lv~~~-~~~~v~~~d~~tG~~~w~~~~~~~---~~~~~~~~~pd--G~--ilvs----~~~~V~~~d~-~G~~~W   69 (276)
T 3no2_A            3 SPQHLLVGGS-GWNKIAIINKDTKEIVWEYPLEKG---WECNSVAATKA--GE--ILFS----YSKGAKMITR-DGRELW   69 (276)
T ss_dssp             CCCEEEEECT-TCSEEEEEETTTTEEEEEEECCTT---CCCCEEEECTT--SC--EEEE----CBSEEEEECT-TSCEEE
T ss_pred             CCCcEEEeeC-CCCEEEEEECCCCeEEEEeCCCcc---CCCcCeEECCC--CC--EEEe----CCCCEEEECC-CCCEEE
Confidence            3344444433 56788999999988665 333210   12234445552  22  3331    2456888888 564  7


Q ss_pred             eeccccCCCCCceeeeccceEEEeCCeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCC--CCceeEEeeCCeEEEE
Q 043460          180 ITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHP--CDSEVIGLCKGALNYA  255 (368)
Q Consensus       180 ~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~--~~~~~l~~~~G~L~~~  255 (368)
                      +....   ..  .. .......- +|.++....  ...++.||+..+... .+.+.......  .........+|.+.++
T Consensus        70 ~~~~~---~~--~~-~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~Gk~l~-~~~~~~~~~~~~~~~~~v~~~~~G~~lv~  141 (276)
T 3no2_A           70 NIAAP---AG--CE-MQTARILP-DGNALVAWCGHPSTILEVNMKGEVLS-KTEFETGIERPHAQFRQINKNKKGNYLVP  141 (276)
T ss_dssp             EEECC---TT--CE-EEEEEECT-TSCEEEEEESTTEEEEEECTTSCEEE-EEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred             EEcCC---CC--cc-ccccEECC-CCCEEEEecCCCCEEEEEeCCCCEEE-EEeccCCCCcccccccCceECCCCCEEEE
Confidence            76541   00  01 11223344 777766654  467899998666544 45544322111  0011223447777766


Q ss_pred             EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEE
Q 043460          256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYH  334 (368)
Q Consensus       256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~yd  334 (368)
                      ...+..+..|-.+ .+.               .|+....    ...        .. .....++++++.. ...+++.+|
T Consensus       142 ~~~~~~v~~~d~~-G~~---------------~w~~~~~----~~~--------~~-~~~~~~g~~~v~~~~~~~v~~~d  192 (276)
T 3no2_A          142 LFATSEVREIAPN-GQL---------------LNSVKLS----GTP--------FS-SAFLDNGDCLVACGDAHCFVQLN  192 (276)
T ss_dssp             ETTTTEEEEECTT-SCE---------------EEEEECS----SCC--------CE-EEECTTSCEEEECBTTSEEEEEC
T ss_pred             ecCCCEEEEECCC-CCE---------------EEEEECC----CCc--------cc-eeEcCCCCEEEEeCCCCeEEEEe
Confidence            6666666666554 333               6765431    000        11 2345677877766 455899999


Q ss_pred             CCCCeE
Q 043460          335 LKTNKM  340 (368)
Q Consensus       335 l~t~~~  340 (368)
                      ++|.++
T Consensus       193 ~~tG~~  198 (276)
T 3no2_A          193 LESNRI  198 (276)
T ss_dssp             TTTCCE
T ss_pred             CcCCcE
Confidence            997765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=86.91  E-value=14  Score=31.81  Aligned_cols=198  Identities=8%  Similarity=0.010  Sum_probs=103.9

Q ss_pred             cCCcEEEEeecCCCeeEEEEcccCccceec-CCCCc-CCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc
Q 043460          102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAI-PKARE-DVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW  179 (368)
Q Consensus       102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~l-P~~~~-~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W  179 (368)
                      +.+|-+++..  ....+.|||..+++.... ..... ........+.+.|.  +.+ ++. ..  ....+.+|+.+++..
T Consensus        60 ~~~~~~l~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~-l~~-~~--~d~~i~~~d~~~~~~  131 (337)
T 1gxr_A           60 SNPTRHVYTG--GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCT-LIV-GG--EASTLSIWDLAAPTP  131 (337)
T ss_dssp             CSSSSEEEEE--CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSE-EEE-EE--SSSEEEEEECCCC--
T ss_pred             ecCCcEEEEc--CCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC--CCE-EEE-Ec--CCCcEEEEECCCCCc
Confidence            4455555554  367889999887653221 11100 11123345666662  232 222 22  246799999988875


Q ss_pred             eeccccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCeEEEEE
Q 043460          180 ITRKVSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGALNYAS  256 (368)
Q Consensus       180 ~~~~~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~  256 (368)
                      ...........+.     .++.+. +|.....+. ++.|..+|+.+.+....+.....   .  ...+... +|...++.
T Consensus       132 ~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~---~--i~~~~~~~~~~~l~~~  201 (337)
T 1gxr_A          132 RIKAELTSSAPAC-----YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD---G--ASCIDISNDGTKLWTG  201 (337)
T ss_dssp             EEEEEEECSSSCE-----EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS---C--EEEEEECTTSSEEEEE
T ss_pred             ceeeecccCCCce-----EEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC---c--eEEEEECCCCCEEEEE
Confidence            4433211110000     112220 444444443 67899999998765523322111   1  1233333 67777777


Q ss_pred             ECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEEC
Q 043460          257 RNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHL  335 (368)
Q Consensus       257 ~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl  335 (368)
                      ..+..+.+|-+....                   .+..+...         ....-+.+.+++..++.. .+..+..||+
T Consensus       202 ~~dg~i~~~d~~~~~-------------------~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~~~~i~~~~~  253 (337)
T 1gxr_A          202 GLDNTVRSWDLREGR-------------------QLQQHDFT---------SQIFSLGYCPTGEWLAVGMESSNVEVLHV  253 (337)
T ss_dssp             ETTSEEEEEETTTTE-------------------EEEEEECS---------SCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ecCCcEEEEECCCCc-------------------eEeeecCC---------CceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence            777899999876531                   22222211         123345667777777766 4667899999


Q ss_pred             CCCeEEEecc
Q 043460          336 KTNKMELFST  345 (368)
Q Consensus       336 ~t~~~~~v~~  345 (368)
                      ++.+...+..
T Consensus       254 ~~~~~~~~~~  263 (337)
T 1gxr_A          254 NKPDKYQLHL  263 (337)
T ss_dssp             TSSCEEEECC
T ss_pred             CCCCeEEEcC
Confidence            8887665543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=86.66  E-value=13  Score=33.08  Aligned_cols=198  Identities=10%  Similarity=0.050  Sum_probs=89.0

Q ss_pred             CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC-ceeccccCCCCCce
Q 043460          114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT-WITRKVSVKPRRPV  192 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~-W~~~~~~~~~~~p~  192 (368)
                      ....+.|||..++++..+-.... .......+.+.|.  +.+ ++ ...  ....+.+|+..++. |...........+.
T Consensus        31 ~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~--~~~-l~-s~s--~d~~v~vwd~~~~~~~~~~~~~~~~~~~v  103 (377)
T 3dwl_C           31 ATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPK--SNR-IV-TCS--QDRNAYVYEKRPDGTWKQTLVLLRLNRAA  103 (377)
T ss_dssp             SSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTT--TCC-EE-EEE--TTSSEEEC------CCCCEEECCCCSSCE
T ss_pred             CCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCC--CCE-EE-EEe--CCCeEEEEEcCCCCceeeeeEecccCCce
Confidence            45677889988875443332221 1123345666662  232 22 222  24568888888876 55443211111011


Q ss_pred             eeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCe----EEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeEEEE
Q 043460          193 SFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALS----EAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTLLIW  265 (368)
Q Consensus       193 ~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~----~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~IW  265 (368)
                           .++.+. +|.....+. ++.|..+|+.+.+    .. .+..|..  ..  ...+.. .+|.+.+....+..+.||
T Consensus       104 -----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~h~--~~--v~~~~~~~~~~~l~~~~~d~~i~iw  173 (377)
T 3dwl_C          104 -----TFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK-HLKRPLR--ST--ILSLDWHPNNVLLAAGCADRKAYVL  173 (377)
T ss_dssp             -----EEEECCTTSSCCEEEESSSCEEECCC-----CCCCE-EECSSCC--SC--EEEEEECTTSSEEEEEESSSCEEEE
T ss_pred             -----EEEEECCCCCEEEEEecCCeEEEEEECCcccceeee-EeecccC--CC--eEEEEEcCCCCEEEEEeCCCEEEEE
Confidence                 112220 343333333 6778888988875    23 3332211  11  123333 367777777777899999


Q ss_pred             EEccCCCCCCCCCCccCCCCCCceEEEEEee--eccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeE
Q 043460          266 QLDDHRHHSNSHGSNKAASGARSWILKHSIC--MDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKM  340 (368)
Q Consensus       266 ~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~  340 (368)
                      .+...+..        .......|.......  ...+...    ..+.-+.+.+++..++.. .+..+..||+++.+.
T Consensus       174 d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          174 SAYVRDVD--------AKPEASVWGSRLPFNTVCAEYPSG----GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             EECCSSCC---------CCCSCSSCSCCCEEEEEECCCCS----SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EEEecccC--------CCccccccccccchhhhhhcccCC----ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            98643110        000111232211111  1111111    234556677777766655 566788888887764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=86.17  E-value=20  Score=32.85  Aligned_cols=149  Identities=12%  Similarity=0.079  Sum_probs=75.6

Q ss_pred             Cc-EEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceec
Q 043460          104 NG-LILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITR  182 (368)
Q Consensus       104 ~G-lll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~  182 (368)
                      ++ +|....  ....+.|||..+++...+-... .+......+.+.|. .+. .++...   ....+.+++.+++.-+..
T Consensus       131 ~~~~lasGs--~dg~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~-~~~-~l~s~s---~D~~v~iwd~~~~~~~~~  202 (435)
T 4e54_B          131 HPSTVAVGS--KGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPL-NTN-QFYASS---MEGTTRLQDFKGNILRVF  202 (435)
T ss_dssp             CTTCEEEEE--TTSCEEEECSSCCSCCEEECCC-SSSCCCCEEEECSS-CTT-EEEEEC---SSSCEEEEETTSCEEEEE
T ss_pred             CCCEEEEEe--CCCEEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCC-CCC-EEEEEe---CCCEEEEeeccCCceeEE
Confidence            44 444443  5678999999888754432211 12234567788773 222 333322   245688888877654433


Q ss_pred             cccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCe-EEEEEECC
Q 043460          183 KVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGA-LNYASRNQ  259 (368)
Q Consensus       183 ~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~-L~~~~~~~  259 (368)
                      .......   .....-...- +|.+...+. ++.|..+|+.+.... .+....   ..  -..+... +|. +.+....+
T Consensus       203 ~~~~~~~---~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~-~~~~h~---~~--v~~v~~~p~~~~~~~s~s~d  272 (435)
T 4e54_B          203 ASSDTIN---IWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKELW-NLRMHK---KK--VTHVALNPCCDWFLATASVD  272 (435)
T ss_dssp             ECCSSCS---CCCCCEEEET-TTTEEEEECSSSBEEEEESSSCBCC-CSBCCS---SC--EEEEEECTTCSSEEEEEETT
T ss_pred             eccCCCC---ccEEEEEECC-CCCEEEEEeCCCcEeeeccCcceeE-EEeccc---ce--EEeeeecCCCceEEEEecCc
Confidence            2111100   0001111222 455444444 678888998765443 222111   10  1123322 444 55566677


Q ss_pred             CeEEEEEEccC
Q 043460          260 STLLIWQLDDH  270 (368)
Q Consensus       260 ~~~~IW~l~~~  270 (368)
                      ..+.||-+...
T Consensus       273 ~~v~iwd~~~~  283 (435)
T 4e54_B          273 QTVKIWDLRQV  283 (435)
T ss_dssp             SBCCEEETTTC
T ss_pred             ceeeEEecccc
Confidence            89999987764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=86.12  E-value=13  Score=33.32  Aligned_cols=113  Identities=11%  Similarity=0.169  Sum_probs=62.4

Q ss_pred             ceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCC-----CCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCC
Q 043460          198 QSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNN-----HPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRH  272 (368)
Q Consensus       198 ~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~-----~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~  272 (368)
                      .++.. +|.+|.....+.+.+||..+++......++....     ...........+|.|++...+ .  .|..++..++
T Consensus        48 ~p~v~-~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-g--~l~a~d~~tG  123 (376)
T 3q7m_A           48 HPALA-DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-A--QVYALNTSDG  123 (376)
T ss_dssp             CCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT-S--EEEEEETTTC
T ss_pred             ccEEE-CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC-C--EEEEEECCCC
Confidence            46888 9999998767899999998776543445543211     110122345567777765433 3  3444443311


Q ss_pred             CCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEE
Q 043460          273 HSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKME  341 (368)
Q Consensus       273 ~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~  341 (368)
                                   ...|....  +.. ..        ..+. +.  ++.|++. ....+++||.+|++..
T Consensus       124 -------------~~~W~~~~--~~~-~~--------~~p~-~~--~~~v~v~~~~g~l~~~d~~tG~~~  166 (376)
T 3q7m_A          124 -------------TVAWQTKV--AGE-AL--------SRPV-VS--DGLVLIHTSNGQLQALNEADGAVK  166 (376)
T ss_dssp             -------------CEEEEEEC--SSC-CC--------SCCE-EE--TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             -------------CEEEEEeC--CCc-eE--------cCCE-EE--CCEEEEEcCCCeEEEEECCCCcEE
Confidence                         11675532  111 11        1111 22  3456665 5667999999888744

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=86.10  E-value=18  Score=32.08  Aligned_cols=192  Identities=11%  Similarity=0.168  Sum_probs=93.2

Q ss_pred             CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460          104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK  183 (368)
Q Consensus       104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~  183 (368)
                      +|-+++... ....+.|||..++++................+.+.|.  +.+ ++. ..  ....+.+++..++.++...
T Consensus        27 ~g~~las~~-~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~-l~s-~s--~D~~v~iw~~~~~~~~~~~   99 (345)
T 3fm0_A           27 AGTLLASCG-GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC--GNY-LAS-AS--FDATTCIWKKNQDDFECVT   99 (345)
T ss_dssp             TSSCEEEEE-TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT--SSE-EEE-EE--TTSCEEEEEECCC-EEEEE
T ss_pred             CCCEEEEEc-CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC--CCE-EEE-EE--CCCcEEEEEccCCCeEEEE
Confidence            444444433 5667888998877654221111112223445677762  333 222 22  2456777877776654433


Q ss_pred             ccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCe-EEEEEeCCCCCCCCCCceeEE-eeCCeEEEEEECC
Q 043460          184 VSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALS-EAEIIEVPDKNNHPCDSEVIG-LCKGALNYASRNQ  259 (368)
Q Consensus       184 ~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~-~~~~~~lP~~~~~~~~~~~l~-~~~G~L~~~~~~~  259 (368)
                      .......+.     .++.+. +|.+...+. ++.|..+|+.++. .. .+..-......  -..+. ..+|.+.+....+
T Consensus       100 ~~~~h~~~v-----~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~h~~~--v~~~~~~p~~~~l~s~s~d  171 (345)
T 3fm0_A          100 TLEGHENEV-----KSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE-CVSVLNSHTQD--VKHVVWHPSQELLASASYD  171 (345)
T ss_dssp             EECCCSSCE-----EEEEECTTSSEEEEEETTSCEEEEEECTTSCEE-EEEEECCCCSC--EEEEEECSSSSCEEEEETT
T ss_pred             EccCCCCCc-----eEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE-EEEEecCcCCC--eEEEEECCCCCEEEEEeCC
Confidence            211000001     122220 454444443 6788889987653 22 22211111111  11222 2367777777778


Q ss_pred             CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEEC
Q 043460          260 STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHL  335 (368)
Q Consensus       260 ~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl  335 (368)
                      ..+.||.+..  .               .|....++.-..        ..+.-+.+.+++..+... .+..+..+|.
T Consensus       172 ~~i~~w~~~~--~---------------~~~~~~~~~~h~--------~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          172 DTVKLYREEE--D---------------DWVCCATLEGHE--------STVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             SCEEEEEEET--T---------------EEEEEEEECCCS--------SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CcEEEEEecC--C---------------CEEEEEEecCCC--------CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            8999998776  3               576655554111        123345566666655544 3445555553

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=85.33  E-value=16  Score=30.96  Aligned_cols=191  Identities=12%  Similarity=0.026  Sum_probs=98.5

Q ss_pred             cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460          102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT  181 (368)
Q Consensus       102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~  181 (368)
                      ..+|-+.+... ....++++||. ++...++.+..  .....++..|+.  +.  ++....  ....+.+|+.. +....
T Consensus        70 ~~~g~l~v~~~-~~~~v~~~d~~-g~~~~~~~~~~--~~~~~~i~~~~~--g~--l~v~~~--~~~~i~~~~~~-g~~~~  138 (300)
T 2qc5_A           70 SSLGDIWFTEN-GANKIGKLSKK-GGFTEYPLPQP--DSGPYGITEGLN--GD--IWFTQL--NGDRIGKLTAD-GTIYE  138 (300)
T ss_dssp             CTTSCEEEEET-TTTEEEEECTT-SCEEEEECSST--TCCEEEEEECST--TC--EEEEET--TTTEEEEECTT-SCEEE
T ss_pred             CCCCCEEEEec-CCCeEEEECCC-CCeEEecCCCC--CCCCccceECCC--CC--EEEEcc--CCCeEEEECCC-CCEEE
Confidence            35566655542 35678899988 66655432211  123456677762  22  222221  23467777776 55543


Q ss_pred             ccccCCCCCceeeeccceEEE-eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEEC
Q 043460          182 RKVSVKPRRPVSFYVLQSVYS-RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRN  258 (368)
Q Consensus       182 ~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~  258 (368)
                      .........|      .++.+ .+|.+|+... ...|..||. +.++. .+.+|.....   ...+.. .+|.|++....
T Consensus       139 ~~~~~~~~~~------~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~---~~~i~~d~~g~l~v~~~~  207 (300)
T 2qc5_A          139 YDLPNKGSYP------AFITLGSDNALWFTENQNNSIGRITN-TGKLE-EYPLPTNAAA---PVGITSGNDGALWFVEIM  207 (300)
T ss_dssp             EECSSTTCCE------EEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCC---EEEEEECTTSSEEEEETT
T ss_pred             ccCCCCCCCc------eeEEECCCCCEEEEecCCCeEEEECC-CCcEE-EeeCCCCCCC---cceEEECCCCCEEEEccC
Confidence            3211001111      12332 1678776654 578999999 67777 5666543221   223333 36888877665


Q ss_pred             CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee--CCeEEEEECC
Q 043460          259 QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS--CDMIYRYHLK  336 (368)
Q Consensus       259 ~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~ydl~  336 (368)
                      ...+.++  +. ++               ..... .++. ..       ....-+.+.+++. +++..  ...+..||+ 
T Consensus       208 ~~~i~~~--~~-~g---------------~~~~~-~~~~-~~-------~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-  258 (300)
T 2qc5_A          208 GNKIGRI--TT-TG---------------EISEY-DIPT-PN-------ARPHAITAGKNSE-IWFTEWGANQIGRITN-  258 (300)
T ss_dssp             TTEEEEE--CT-TC---------------CEEEE-ECSS-TT-------CCEEEEEECSTTC-EEEEETTTTEEEEECT-
T ss_pred             CCEEEEE--cC-CC---------------cEEEE-ECCC-CC-------CCceEEEECCCCC-EEEeccCCCeEEEECC-
Confidence            5545444  33 22               33332 1110 00       1123345565666 66654  578999999 


Q ss_pred             CCeEEEe
Q 043460          337 TNKMELF  343 (368)
Q Consensus       337 t~~~~~v  343 (368)
                      +++++..
T Consensus       259 ~g~~~~~  265 (300)
T 2qc5_A          259 DNTIQEY  265 (300)
T ss_dssp             TSCEEEE
T ss_pred             CCcEEEE
Confidence            4555544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=85.33  E-value=19  Score=31.67  Aligned_cols=197  Identities=8%  Similarity=0.042  Sum_probs=100.3

Q ss_pred             CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460          114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS  193 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~  193 (368)
                      ....+.|||..++++..+-.... .......+.+.|...+. .++...   ....+.+|+.+++.-...........+..
T Consensus        77 ~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~v~  151 (379)
T 3jrp_A           77 YDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGP-LLLVAS---SDGKVSVVEFKENGTTSPIIIDAHAIGVN  151 (379)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCS-EEEEEE---TTSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred             cCCEEEEEEcCCCceeEeeeecC-CCcceEEEEeCCCCCCC-EEEEec---CCCcEEEEecCCCCceeeEEecCCCCceE
Confidence            56788999998886443322211 11233456666621122 233222   35678889888764221110000000010


Q ss_pred             eeccceEEEe--------------CCeEEEEEe-CCeEEEEEcCCCe--EEEEEeCCCCCCCCCCceeEEe-eC---CeE
Q 043460          194 FYVLQSVYSR--------------GGILYNLTY-RSTILRYNIEALS--EAEIIEVPDKNNHPCDSEVIGL-CK---GAL  252 (368)
Q Consensus       194 ~~~~~~v~~~--------------~G~lywl~~-~~~il~fD~~~~~--~~~~~~lP~~~~~~~~~~~l~~-~~---G~L  252 (368)
                           ++.+.              +|.+...+. ++.|..+|+.+..  +.....+......   ...+.. .+   |.+
T Consensus       152 -----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~---v~~~~~sp~~~~~~~  223 (379)
T 3jrp_A          152 -----SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW---VRDVAWSPTVLLRSY  223 (379)
T ss_dssp             -----EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC---EEEEEECCCCSSSEE
T ss_pred             -----EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc---EeEEEECCCCCCCCe
Confidence                 12220              244444444 6788899987653  3312223221111   123333 34   777


Q ss_pred             EEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEE
Q 043460          253 NYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIY  331 (368)
Q Consensus       253 ~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~  331 (368)
                      .+....+..+.||.+.....               .+.... +......      ..+.-+.+.+++..++.. .++.+.
T Consensus       224 l~s~~~dg~i~iwd~~~~~~---------------~~~~~~-~~~~~~~------~~v~~~~~s~~g~~l~~~~~dg~i~  281 (379)
T 3jrp_A          224 LASVSQDRTCIIWTQDNEQG---------------PWKKTL-LKEEKFP------DVLWRASWSLSGNVLALSGGDNKVT  281 (379)
T ss_dssp             EEEEETTSCEEEEEESSTTS---------------CCEEEE-SSSSCCS------SCEEEEEECSSSCCEEEEESSSSEE
T ss_pred             EEEEeCCCEEEEEeCCCCCc---------------cceeee-eccccCC------CcEEEEEEcCCCCEEEEecCCCcEE
Confidence            77777888999999987543               333321 1111111      223445677788776665 667799


Q ss_pred             EEECC-CCeEEEecc
Q 043460          332 RYHLK-TNKMELFST  345 (368)
Q Consensus       332 ~ydl~-t~~~~~v~~  345 (368)
                      .||++ .++++.+..
T Consensus       282 iw~~~~~~~~~~~~~  296 (379)
T 3jrp_A          282 LWKENLEGKWEPAGE  296 (379)
T ss_dssp             EEEEEETTEEEEEEE
T ss_pred             EEeCCCCCccccccc
Confidence            99988 455665543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=84.64  E-value=33  Score=33.90  Aligned_cols=190  Identities=13%  Similarity=0.043  Sum_probs=98.4

Q ss_pred             eeEEEEcccCccce--ecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460          116 HRYYVCNPLTKQCV--AIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS  193 (368)
Q Consensus       116 ~~~~v~NP~T~~~~--~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~  193 (368)
                      .++++++.-|++..  .+-..+. ......+..+.|  .+.|-++..........+.+.+..++.|+.......      
T Consensus       202 ~~v~~~~l~t~~~~~~lv~~~~~-~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~------  272 (695)
T 2bkl_A          202 TTIRYHTLGTEPSKDTVVHERTG-DPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG------  272 (695)
T ss_dssp             CEEEEEETTSCGGGCEEEECCCC-CTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS------
T ss_pred             CEEEEEECCCCchhceEEEecCC-CCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC------
Confidence            34888888877632  2211110 001123445555  245544443321123345555555667776652111      


Q ss_pred             eeccceEEEeCCeEEEEEe----CCeEEEEEcCCCe---EEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEE
Q 043460          194 FYVLQSVYSRGGILYNLTY----RSTILRYNIEALS---EAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQ  266 (368)
Q Consensus       194 ~~~~~~v~~~~G~lywl~~----~~~il~fD~~~~~---~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~  266 (368)
                       .....+.- +|.+|..+.    ...|..+|+.+..   |+ .+-.+... ..  ...+...++.|++....+...+||.
T Consensus       273 -~~~~~~~~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~-~~--l~~~~~~~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          273 -AKYEVHAW-KDRFYVLTDEGAPRQRVFEVDPAKPARASWK-EIVPEDSS-AS--LLSVSIVGGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             -CCEEEEEE-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCE-EEECCCSS-CE--EEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             -ceEEEEec-CCcEEEEECCCCCCCEEEEEeCCCCCccCCe-EEecCCCC-Ce--EEEEEEECCEEEEEEEECCEEEEEE
Confidence             01112344 666777664    4789999997754   66 33222111 11  1123445889988888778889999


Q ss_pred             EccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-----eCCeEEEEECCCCeEE
Q 043460          267 LDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-----SCDMIYRYHLKTNKME  341 (368)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~ydl~t~~~~  341 (368)
                      ++-.++                  ....+.++...       .+.-+++.++++.+++.     ....++.||+++++.+
T Consensus       347 ~~~~g~------------------~~~~l~~~~~~-------~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~  401 (695)
T 2bkl_A          347 ATLKGK------------------PVRTVQLPGVG-------AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE  401 (695)
T ss_dssp             EETTCC------------------EEEECCCSSSS-------EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             EeCCCC------------------eeEEecCCCCe-------EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence            875322                  12223322100       11112234456655554     3457999999998877


Q ss_pred             Eecc
Q 043460          342 LFST  345 (368)
Q Consensus       342 ~v~~  345 (368)
                      .+..
T Consensus       402 ~l~~  405 (695)
T 2bkl_A          402 LWAK  405 (695)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            6643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=84.58  E-value=19  Score=31.13  Aligned_cols=204  Identities=10%  Similarity=0.101  Sum_probs=106.1

Q ss_pred             cCCc-EEEEeecCCCeeEEEEcc---cCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCC
Q 043460          102 CCNG-LILLGSSLSKHRYYVCNP---LTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSEN  176 (368)
Q Consensus       102 s~~G-lll~~~~~~~~~~~v~NP---~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~  176 (368)
                      +.+| .|++... ....+.+|+.   .+++... ++..     .....+.++|.  +.+-++ ...  ....+.+|+..+
T Consensus        92 s~dg~~l~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~s~d--g~~l~~-~~~--~~~~v~~~d~~~  160 (343)
T 1ri6_A           92 DHQGQFVFVGSY-NAGNVSVTRLEDGLPVGVVDVVEGL-----DGCHSANISPD--NRTLWV-PAL--KQDRICLFTVSD  160 (343)
T ss_dssp             CTTSSEEEEEET-TTTEEEEEEEETTEEEEEEEEECCC-----TTBCCCEECTT--SSEEEE-EEG--GGTEEEEEEECT
T ss_pred             cCCCCEEEEEec-CCCeEEEEECCCCccccccccccCC-----CCceEEEECCC--CCEEEE-ecC--CCCEEEEEEecC
Confidence            3344 3444432 4567888887   3333222 2211     12345667772  344332 221  245688898887


Q ss_pred             -CCceecc--cc-CCCC-CceeeeccceEEEeCCe-EEEEEe-CCeEEEEEcCC--CeEEE--EE-eCCCCCCCCCCcee
Q 043460          177 -KTWITRK--VS-VKPR-RPVSFYVLQSVYSRGGI-LYNLTY-RSTILRYNIEA--LSEAE--II-EVPDKNNHPCDSEV  244 (368)
Q Consensus       177 -~~W~~~~--~~-~~~~-~p~~~~~~~~v~~~~G~-lywl~~-~~~il~fD~~~--~~~~~--~~-~lP~~~~~~~~~~~  244 (368)
                       +......  .. .... .|...    ...- +|. +|.... .+.|..+|+..  .++..  .+ .+|...........
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~----~~~p-dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  235 (343)
T 1ri6_A          161 DGHLVAQDPAEVTTVEGAGPRHM----VFHP-NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  235 (343)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEE----EECT-TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             CCceeeecccccccCCCCCcceE----EECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence             6665322  11 1111 11111    1222 555 555553 67899999954  44320  22 24433211111112


Q ss_pred             EEee-CCe-EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEE
Q 043460          245 IGLC-KGA-LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDII  322 (368)
Q Consensus       245 l~~~-~G~-L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v  322 (368)
                      +... +|+ |++....+..+.+|.++..++               .+..+..++....         ..-+++.+++..+
T Consensus       236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~---------------~~~~~~~~~~~~~---------~~~~~~s~dg~~l  291 (343)
T 1ri6_A          236 IHITPDGRHLYACDRTASLITVFSVSEDGS---------------VLSKEGFQPTETQ---------PRGFNVDHSGKYL  291 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSC---------------CEEEEEEEECSSS---------CCCEEECTTSSEE
T ss_pred             eEECCCCCEEEEEecCCCEEEEEEEcCCCC---------------ceEEeeeecCCCc---------cceEEECCCCCEE
Confidence            3333 565 444444677899999986544               6777766653221         1225678888888


Q ss_pred             EEee--CCeEEEE--ECCCCeEEEecc
Q 043460          323 FLGS--CDMIYRY--HLKTNKMELFST  345 (368)
Q Consensus       323 ~~~~--~~~~~~y--dl~t~~~~~v~~  345 (368)
                      ++..  ...+..|  |.++++++.+..
T Consensus       292 ~~~~~~~~~v~v~~~d~~~g~~~~~~~  318 (343)
T 1ri6_A          292 IAAGQKSHHISVYEIVGEQGLLHEKGR  318 (343)
T ss_dssp             EEECTTTCEEEEEEEETTTTEEEEEEE
T ss_pred             EEecCCCCeEEEEEEcCCCceeeEccc
Confidence            8773  4566666  777888887765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=84.52  E-value=20  Score=31.28  Aligned_cols=190  Identities=11%  Similarity=0.061  Sum_probs=97.7

Q ss_pred             CeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460          115 KHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS  193 (368)
Q Consensus       115 ~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~  193 (368)
                      ...++++|+.|++... ++...     ...++.+++.  +.+ ++....  ....+.+++.+++.-...-.......+..
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~d--g~~-l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  137 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHNDL-----KPFGATINNT--TQT-LWFGNT--VNSAVTAIDAKTGEVKGRLVLDDRKRTEE  137 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-----CCCSEEEETT--TTE-EEEEET--TTTEEEEEETTTCCEEEEEESCCCCCCSS
T ss_pred             CccEEEEcCCCCeEEEEEecCC-----CcceEEECCC--CCE-EEEEec--CCCEEEEEeCCCCeeEEEEecCCCccccc
Confidence            5689999999987654 33211     2345677762  343 332222  34578899998876322111100000000


Q ss_pred             ---eeccc-eEEEeCCe-EEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEE
Q 043460          194 ---FYVLQ-SVYSRGGI-LYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQ  266 (368)
Q Consensus       194 ---~~~~~-~v~~~~G~-lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~  266 (368)
                         ..... .+.- +|. +|....  ...|..+|+.+.+....++.......   . .....+|+..++...+..+.+|-
T Consensus       138 ~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~-~~~s~dg~~l~~~~~~~~i~~~d  212 (353)
T 3vgz_A          138 VRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST---G-LALDSEGKRLYTTNADGELITID  212 (353)
T ss_dssp             CCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC---C-CEEETTTTEEEEECTTSEEEEEE
T ss_pred             cCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc---e-EEECCCCCEEEEEcCCCeEEEEE
Confidence               00111 2222 444 666553  56799999998877534442221111   1 22233565444444455666665


Q ss_pred             EccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCeEEE
Q 043460          267 LDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKMEL  342 (368)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~~~  342 (368)
                      ++..                   .....+....-...    ....-+++.++++.+|+.  ....+..||+++.+...
T Consensus       213 ~~~~-------------------~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  267 (353)
T 3vgz_A          213 TADN-------------------KILSRKKLLDDGKE----HFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA  267 (353)
T ss_dssp             TTTT-------------------EEEEEEECCCSSSC----CCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             CCCC-------------------eEEEEEEcCCCCCC----cccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            4432                   22233332111000    122335678888888877  34689999999888654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=84.43  E-value=22  Score=31.72  Aligned_cols=197  Identities=10%  Similarity=0.009  Sum_probs=91.0

Q ss_pred             cCCcEEEEeecCCCeeEEEEcccCccceecCCCCc-CCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCce
Q 043460          102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKARE-DVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWI  180 (368)
Q Consensus       102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~-~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~  180 (368)
                      +.+|.++...  ....+.|||..+++......... ........+.+.|.  +.+ ++. ..  ....+.+++.+++.-.
T Consensus       103 s~d~~~l~~s--~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~-l~s-gs--~dg~v~iwd~~~~~~~  174 (357)
T 4g56_B          103 VSEKGILVAS--DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD--GTQ-AVS-GG--KDFSVKVWDLSQKAVL  174 (357)
T ss_dssp             ETTTEEEEEE--TTSCEEEC--------CCCCEEECCCSSCEEEEEECSS--SSE-EEE-EE--TTSCEEEEETTTTEEE
T ss_pred             cCCCCEEEEE--CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC--CCE-EEE-Ee--CCCeEEEEECCCCcEE
Confidence            3455555554  56689999999887655433221 11223345666662  233 222 22  2456888888876533


Q ss_pred             eccccCCCCCceeeeccceEEEe-CCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEE
Q 043460          181 TRKVSVKPRRPVSFYVLQSVYSR-GGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYA  255 (368)
Q Consensus       181 ~~~~~~~~~~p~~~~~~~~v~~~-~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~  255 (368)
                      ..-.....  +.     .++.+. +|. ++..+. ++.|..+|+.+.+....+...... ..  ...+...  ++.+.+.
T Consensus       175 ~~~~~h~~--~v-----~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-~~--v~~v~~sp~~~~~la~  244 (357)
T 4g56_B          175 KSYNAHSS--EV-----NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASD-TI--PTSVTWHPEKDDTFAC  244 (357)
T ss_dssp             EEECCCSS--CE-----EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCC-SC--EEEEEECTTSTTEEEE
T ss_pred             EEEcCCCC--CE-----EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccc-cc--ccchhhhhcccceEEE
Confidence            22110000  00     122220 332 222333 677888998876543122221111 10  1223332  3566666


Q ss_pred             EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCC-EEEEe-eCCeEEEE
Q 043460          256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSD-IIFLG-SCDMIYRY  333 (368)
Q Consensus       256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~~~~~~y  333 (368)
                      ...+..+.||-+...+.               .    ..+...  .      ..+.-+++.+++. +|.-. .+..+..+
T Consensus       245 g~~d~~i~~wd~~~~~~---------------~----~~~~~~--~------~~v~~l~~sp~~~~~lasgs~D~~i~iw  297 (357)
T 4g56_B          245 GDETGNVSLVNIKNPDS---------------A----QTSAVH--S------QNITGLAYSYHSSPFLASISEDCTVAVL  297 (357)
T ss_dssp             EESSSCEEEEESSCGGG---------------C----EEECCC--S------SCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred             eecccceeEEECCCCcE---------------e----EEEecc--c------eeEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence            66778899998765321               1    111110  0      1233455665553 33333 45678888


Q ss_pred             ECCCCeEEEe
Q 043460          334 HLKTNKMELF  343 (368)
Q Consensus       334 dl~t~~~~~v  343 (368)
                      |+++++..+.
T Consensus       298 d~~~~~~~~~  307 (357)
T 4g56_B          298 DADFSEVFRD  307 (357)
T ss_dssp             CTTSCEEEEE
T ss_pred             ECCCCcEeEE
Confidence            8888876543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=84.25  E-value=18  Score=30.68  Aligned_cols=148  Identities=13%  Similarity=0.081  Sum_probs=78.8

Q ss_pred             CCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceec
Q 043460          103 CNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITR  182 (368)
Q Consensus       103 ~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~  182 (368)
                      .+|-+++... ....++++|+..+....+....  ......++.+|+.  +  +++....  ....+.+|+.....-...
T Consensus       130 ~~g~l~v~~~-~~~~i~~~~~~g~~~~~~~~~~--~~~~p~~i~~~~~--g--~l~v~~~--~~~~i~~~~~~g~~~~~~  200 (286)
T 1q7f_A          130 NKGRIIVVEC-KVMRVIIFDQNGNVLHKFGCSK--HLEFPNGVVVNDK--Q--EIFISDN--RAHCVKVFNYEGQYLRQI  200 (286)
T ss_dssp             TTSCEEEEET-TTTEEEEECTTSCEEEEEECTT--TCSSEEEEEECSS--S--EEEEEEG--GGTEEEEEETTCCEEEEE
T ss_pred             CCCCEEEEEC-CCCEEEEEcCCCCEEEEeCCCC--ccCCcEEEEECCC--C--CEEEEEC--CCCEEEEEcCCCCEEEEE
Confidence            4565555543 4567888887655444443221  1123456777872  2  2333322  245788888754432222


Q ss_pred             cccCCCCCceeeeccceEEE-eCCeEEEEEe-CC-eEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEEC
Q 043460          183 KVSVKPRRPVSFYVLQSVYS-RGGILYNLTY-RS-TILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRN  258 (368)
Q Consensus       183 ~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~-~~-~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~  258 (368)
                      ..  ...  ....  .++.+ .+|.+|.... .. .|..||...+... .+..+.....   ...++. .+|.|++.. .
T Consensus       201 ~~--~g~--~~~p--~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~---~~~i~~~~~g~l~vs~-~  269 (286)
T 1q7f_A          201 GG--EGI--TNYP--IGVGINSNGEILIADNHNNFNLTIFTQDGQLIS-ALESKVKHAQ---CFDVALMDDGSVVLAS-K  269 (286)
T ss_dssp             SC--TTT--SCSE--EEEEECTTCCEEEEECSSSCEEEEECTTSCEEE-EEEESSCCSC---EEEEEEETTTEEEEEE-T
T ss_pred             cc--CCc--cCCC--cEEEECCCCCEEEEeCCCCEEEEEECCCCCEEE-EEcccCCCCc---ceeEEECCCCcEEEEC-C
Confidence            21  100  0111  12333 1677777665 33 8999998776666 5544322111   123333 478988875 4


Q ss_pred             CCeEEEEEEccC
Q 043460          259 QSTLLIWQLDDH  270 (368)
Q Consensus       259 ~~~~~IW~l~~~  270 (368)
                      +.++.||.+...
T Consensus       270 ~~~v~v~~~~~~  281 (286)
T 1q7f_A          270 DYRLYIYRYVQL  281 (286)
T ss_dssp             TTEEEEEECSCC
T ss_pred             CCeEEEEEcccc
Confidence            678999987653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=84.21  E-value=19  Score=30.85  Aligned_cols=186  Identities=9%  Similarity=-0.001  Sum_probs=99.8

Q ss_pred             CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460          114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS  193 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~  193 (368)
                      ....++++||.++ ...+....    ....++.+++.  +.  ++....  ....+.+|+..++..+....... .  ..
T Consensus        48 ~~~~i~~~~~~~~-~~~~~~~~----~~~~~l~~~~d--g~--l~v~~~--~~~~i~~~d~~~g~~~~~~~~~~-~--~~  113 (296)
T 3e5z_A           48 RQNRTWAWSDDGQ-LSPEMHPS----HHQNGHCLNKQ--GH--LIACSH--GLRRLERQREPGGEWESIADSFE-G--KK  113 (296)
T ss_dssp             GGTEEEEEETTSC-EEEEESSC----SSEEEEEECTT--CC--EEEEET--TTTEEEEECSTTCCEEEEECEET-T--EE
T ss_pred             CCCEEEEEECCCC-eEEEECCC----CCcceeeECCC--Cc--EEEEec--CCCeEEEEcCCCCcEEEEeeccC-C--CC
Confidence            4568899999988 55554322    12346777772  23  332221  24578899998888765432111 1  01


Q ss_pred             eeccceEEE-eCCeEEEEEe------------------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEE
Q 043460          194 FYVLQSVYS-RGGILYNLTY------------------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALN  253 (368)
Q Consensus       194 ~~~~~~v~~-~~G~lywl~~------------------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~  253 (368)
                      ...-..+.+ .+|.+|+...                  ...|..+|.. .+.. .+.-...  .   ...++. .+|++.
T Consensus       114 ~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~--~---~~gi~~s~dg~~l  186 (296)
T 3e5z_A          114 LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDRV--K---PNGLAFLPSGNLL  186 (296)
T ss_dssp             CCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCCS--S---EEEEEECTTSCEE
T ss_pred             CCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecCCC--C---CccEEECCCCCEE
Confidence            111112222 1688777421                  3479999988 5555 3321111  1   112333 367766


Q ss_pred             EEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCce-EEEEEeeeccccccCccccceEEEEEecCCCEEEEeeCCeEEE
Q 043460          254 YASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSW-ILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGSCDMIYR  332 (368)
Q Consensus       254 ~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  332 (368)
                      +.......+.+|.++.. +               .. .....+.   ....     ...-+++.++|. +++.....+.+
T Consensus       187 v~~~~~~~i~~~~~~~~-g---------------~~~~~~~~~~---~~~~-----~p~~i~~d~~G~-l~v~~~~~v~~  241 (296)
T 3e5z_A          187 VSDTGDNATHRYCLNAR-G---------------ETEYQGVHFT---VEPG-----KTDGLRVDAGGL-IWASAGDGVHV  241 (296)
T ss_dssp             EEETTTTEEEEEEECSS-S---------------CEEEEEEEEC---CSSS-----CCCSEEEBTTSC-EEEEETTEEEE
T ss_pred             EEeCCCCeEEEEEECCC-C---------------cCcCCCeEee---CCCC-----CCCeEEECCCCC-EEEEcCCeEEE
Confidence            44445667888877632 2               34 2222221   1111     111245667776 45545788999


Q ss_pred             EECCCCeEEEecc
Q 043460          333 YHLKTNKMELFST  345 (368)
Q Consensus       333 ydl~t~~~~~v~~  345 (368)
                      ||++.+.++.+..
T Consensus       242 ~~~~g~~~~~~~~  254 (296)
T 3e5z_A          242 LTPDGDELGRVLT  254 (296)
T ss_dssp             ECTTSCEEEEEEC
T ss_pred             ECCCCCEEEEEEC
Confidence            9999777777655

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=84.02  E-value=19  Score=30.57  Aligned_cols=146  Identities=10%  Similarity=0.066  Sum_probs=77.4

Q ss_pred             EecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc
Q 043460          100 IDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW  179 (368)
Q Consensus       100 ~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W  179 (368)
                      ....+|-+.+... ....+.++||. ++...++.+.  ......++..|+.  +.  ++....  ....+.+|+.. +..
T Consensus        26 ~~d~~g~l~v~~~-~~~~v~~~~~~-~~~~~~~~~~--~~~~~~~i~~~~~--g~--l~v~~~--~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           26 TSSEDGKVWFTQH-KANKISSLDQS-GRIKEFEVPT--PDAKVMCLIVSSL--GD--IWFTEN--GANKIGKLSKK-GGF   94 (300)
T ss_dssp             EECTTSCEEEEET-TTTEEEEECTT-SCEEEEECSS--TTCCEEEEEECTT--SC--EEEEET--TTTEEEEECTT-SCE
T ss_pred             eECCCCCEEEEcC-CCCeEEEECCC-CceEEEECCC--CCCcceeEEECCC--CC--EEEEec--CCCeEEEECCC-CCe
Confidence            3344566666543 45678889988 7766544321  1123456667752  22  222221  23567788877 666


Q ss_pred             eeccccCCCCCceeeeccceEEE-eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEE
Q 043460          180 ITRKVSVKPRRPVSFYVLQSVYS-RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYAS  256 (368)
Q Consensus       180 ~~~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~  256 (368)
                      ..........      .-.++.+ .+|.+|+... ...|..+|+. ++.. .+.+|.....   ...++. .+|+|++..
T Consensus        95 ~~~~~~~~~~------~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~---~~~i~~d~~g~l~v~~  163 (300)
T 2qc5_A           95 TEYPLPQPDS------GPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSY---PAFITLGSDNALWFTE  163 (300)
T ss_dssp             EEEECSSTTC------CEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCC---EEEEEECTTSSEEEEE
T ss_pred             EEecCCCCCC------CCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCC---ceeEEECCCCCEEEEe
Confidence            5433110101      1113333 1678777654 5789999998 7776 5556532211   223333 467877766


Q ss_pred             ECCCeEEEEEEcc
Q 043460          257 RNQSTLLIWQLDD  269 (368)
Q Consensus       257 ~~~~~~~IW~l~~  269 (368)
                      .....  |++++.
T Consensus       164 ~~~~~--i~~~~~  174 (300)
T 2qc5_A          164 NQNNS--IGRITN  174 (300)
T ss_dssp             TTTTE--EEEECT
T ss_pred             cCCCe--EEEECC
Confidence            54444  444444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=84.01  E-value=19  Score=30.55  Aligned_cols=191  Identities=10%  Similarity=0.026  Sum_probs=96.9

Q ss_pred             cCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCcee
Q 043460          102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWIT  181 (368)
Q Consensus       102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~  181 (368)
                      ..+|-+.+... ....++++||. ++...++.+.  ......++..|+.  +.  +.....  ....+.+|+.. +..+.
T Consensus        23 d~~g~l~v~~~-~~~~v~~~d~~-~~~~~~~~~~--~~~~~~~i~~~~~--g~--l~v~~~--~~~~i~~~~~~-g~~~~   91 (299)
T 2z2n_A           23 SDKGKVWITQH-KANMISCINLD-GKITEYPLPT--PDAKVMCLTISSD--GE--VWFTEN--AANKIGRITKK-GIIKE   91 (299)
T ss_dssp             CTTSCEEEEET-TTTEEEEECTT-CCEEEEECSS--TTCCEEEEEECTT--SC--EEEEET--TTTEEEEECTT-SCEEE
T ss_pred             CCCCCEEEEec-CCCcEEEEcCC-CCeEEecCCc--ccCceeeEEECCC--CC--EEEeCC--CCCeEEEECCC-CcEEE
Confidence            45666666542 35678899998 7766654321  1123456777762  22  222221  23457777765 44443


Q ss_pred             ccccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEEC
Q 043460          182 RKVSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRN  258 (368)
Q Consensus       182 ~~~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~  258 (368)
                      ........      .-.++... +|.+|+... ...|..+|+ +.+.. .+..|.....   ...++. .+|.|++....
T Consensus        92 ~~~~~~~~------~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~---~~~i~~~~~g~l~v~~~~  160 (299)
T 2z2n_A           92 YTLPNPDS------APYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSY---PSFITLGSDNALWFTENQ  160 (299)
T ss_dssp             EECSSTTC------CEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCC---EEEEEECTTSCEEEEETT
T ss_pred             EeCCCcCC------CceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCC---CceEEEcCCCCEEEEeCC
Confidence            33110000      11133331 577776553 578999999 66776 5555532211   223333 36788776654


Q ss_pred             CCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEee--CCeEEEEECC
Q 043460          259 QSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLGS--CDMIYRYHLK  336 (368)
Q Consensus       259 ~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~ydl~  336 (368)
                      ...+  +.++. ++               +.... .++ ...       ....-+++.+++. +|+..  ...+.+||+ 
T Consensus       161 ~~~i--~~~~~-~g---------------~~~~~-~~~-~~~-------~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-  211 (299)
T 2z2n_A          161 NNAI--GRITE-SG---------------DITEF-KIP-TPA-------SGPVGITKGNDDA-LWFVEIIGNKIGRITT-  211 (299)
T ss_dssp             TTEE--EEECT-TC---------------CEEEE-ECS-STT-------CCEEEEEECTTSS-EEEEETTTTEEEEECT-
T ss_pred             CCEE--EEEcC-CC---------------cEEEe-eCC-CCC-------CcceeEEECCCCC-EEEEccCCceEEEECC-
Confidence            4444  44444 23               33321 111 000       1122344555555 45553  567888988 


Q ss_pred             CCeEEEe
Q 043460          337 TNKMELF  343 (368)
Q Consensus       337 t~~~~~v  343 (368)
                      +++++.+
T Consensus       212 ~g~~~~~  218 (299)
T 2z2n_A          212 SGEITEF  218 (299)
T ss_dssp             TCCEEEE
T ss_pred             CCcEEEE
Confidence            6666654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=83.80  E-value=22  Score=31.21  Aligned_cols=195  Identities=9%  Similarity=0.041  Sum_probs=96.6

Q ss_pred             CCeeEEEEcccCccc---eecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCC
Q 043460          114 SKHRYYVCNPLTKQC---VAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRR  190 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~---~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~  190 (368)
                      ....+.|||..++++   ..++...    .....+.+.|.  +.+- + ...  ....+.+|+.+++.+...........
T Consensus        28 ~d~~v~i~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~--~~~l-~-~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~   97 (372)
T 1k8k_C           28 NNHEVHIYEKSGNKWVQVHELKEHN----GQVTGVDWAPD--SNRI-V-TCG--TDRNAYVWTLKGRTWKPTLVILRINR   97 (372)
T ss_dssp             SSSEEEEEEEETTEEEEEEEEECCS----SCEEEEEEETT--TTEE-E-EEE--TTSCEEEEEEETTEEEEEEECCCCSS
T ss_pred             CCCEEEEEeCCCCcEEeeeeecCCC----CcccEEEEeCC--CCEE-E-EEc--CCCeEEEEECCCCeeeeeEEeecCCC
Confidence            456788999888853   3333211    23345667762  3332 2 222  24568888888887655432111110


Q ss_pred             ceeeeccceEEE-eCCeEEEEEe-CCeEEEEEcCCCe-EEEEEeCCCCCCCCCCceeEEee-CCeEEEEEECCCeEEEEE
Q 043460          191 PVSFYVLQSVYS-RGGILYNLTY-RSTILRYNIEALS-EAEIIEVPDKNNHPCDSEVIGLC-KGALNYASRNQSTLLIWQ  266 (368)
Q Consensus       191 p~~~~~~~~v~~-~~G~lywl~~-~~~il~fD~~~~~-~~~~~~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~IW~  266 (368)
                      +.     .++.+ .+|.....+. ++.|..+|+.+.. +.....+.......  ...+... +|.+.+....+..+.+|.
T Consensus        98 ~v-----~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~~~d  170 (372)
T 1k8k_C           98 AA-----RCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST--VLSLDWHPNSVLLAAGSCDFKCRIFS  170 (372)
T ss_dssp             CE-----EEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC--EEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ce-----eEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCC--eeEEEEcCCCCEEEEEcCCCCEEEEE
Confidence            01     11222 0444444443 6778888887765 22011221111111  2233333 677777777788999999


Q ss_pred             EccCCCCCCCCCCccCCCCCCceE-------EEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCC
Q 043460          267 LDDHRHHSNSHGSNKAASGARSWI-------LKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTN  338 (368)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~~W~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~  338 (368)
                      +......        .......|.       .+..+.     ...   ..+.-+.+.+++..++.. .+..+..||+++.
T Consensus       171 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          171 AYIKEVE--------ERPAPTPWGSKMPFGELMFESS-----SSC---GWVHGVCFSANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             CCCTTTS--------CCCCCBTTBSCCCTTCEEEECC-----CCS---SCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             ccccccc--------ccccccccccccchhhheEecC-----CCC---CeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            7643110        000011222       222221     110   234445667777766665 5667889998877


Q ss_pred             eEE
Q 043460          339 KME  341 (368)
Q Consensus       339 ~~~  341 (368)
                      +..
T Consensus       235 ~~~  237 (372)
T 1k8k_C          235 MAV  237 (372)
T ss_dssp             TEE
T ss_pred             cee
Confidence            643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=83.69  E-value=21  Score=30.88  Aligned_cols=143  Identities=10%  Similarity=0.130  Sum_probs=69.4

Q ss_pred             CcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCce
Q 043460          166 DPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSE  243 (368)
Q Consensus       166 ~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~  243 (368)
                      ...+.+|+.+++.-...-....  .+.     .++.+. +|.+...+. ++.|..+|+.+.+....+.....      ..
T Consensus       194 d~~i~i~d~~~~~~~~~~~~h~--~~v-----~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------v~  260 (340)
T 4aow_A          194 DKLVKVWNLANCKLKTNHIGHT--GYL-----NTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI------IN  260 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCCS--SCE-----EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC------EE
T ss_pred             CCEEEEEECCCCceeeEecCCC--CcE-----EEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce------EE
Confidence            3457788877765433221110  001     122220 455444444 67899999998765423332211      12


Q ss_pred             eEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEE
Q 043460          244 VIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIF  323 (368)
Q Consensus       244 ~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~  323 (368)
                      .+....+...++...+..+.||-++....               .+..............   ...+.-+++.+++..|+
T Consensus       261 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~h---~~~v~~l~~s~dg~~l~  322 (340)
T 4aow_A          261 ALCFSPNRYWLCAATGPSIKIWDLEGKII---------------VDELKQEVISTSSKAE---PPQCTSLAWSADGQTLF  322 (340)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEETTTTEE---------------EEEECCC-------CC---CCCEEEEEECTTSSEEE
T ss_pred             eeecCCCCceeeccCCCEEEEEECCCCeE---------------EEeccccceeeeccCC---CCCEEEEEECCCCCEEE
Confidence            33333333334444567899997765311               1111111110001100   02344466788888777


Q ss_pred             Ee-eCCeEEEEECCCCe
Q 043460          324 LG-SCDMIYRYHLKTNK  339 (368)
Q Consensus       324 ~~-~~~~~~~ydl~t~~  339 (368)
                      .. .++.|..+|++|++
T Consensus       323 sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          323 AGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEETTSCEEEEEEEC--
T ss_pred             EEeCCCEEEEEeCCCcC
Confidence            65 56789999998864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=83.63  E-value=23  Score=31.34  Aligned_cols=203  Identities=9%  Similarity=-0.027  Sum_probs=87.9

Q ss_pred             CCcEEEEeecCCCeeEEEEcccCcc-ceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC-ce
Q 043460          103 CNGLILLGSSLSKHRYYVCNPLTKQ-CVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT-WI  180 (368)
Q Consensus       103 ~~Glll~~~~~~~~~~~v~NP~T~~-~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~-W~  180 (368)
                      .+|-+++... ....+.|||..+++ +....... ........+.+.|.  +. .++...   ....+.+|+.+++. |.
T Consensus        65 ~~~~~l~s~s-~d~~v~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~-~l~~~~---~d~~i~iwd~~~~~~~~  136 (377)
T 3dwl_C           65 PKSNRIVTCS-QDRNAYVYEKRPDGTWKQTLVLL-RLNRAATFVRWSPN--ED-KFAVGS---GARVISVCYFEQENDWW  136 (377)
T ss_dssp             TTTCCEEEEE-TTSSEEEC------CCCCEEECC-CCSSCEEEEECCTT--SS-CCEEEE---SSSCEEECCC-----CC
T ss_pred             CCCCEEEEEe-CCCeEEEEEcCCCCceeeeeEec-ccCCceEEEEECCC--CC-EEEEEe---cCCeEEEEEECCcccce
Confidence            3443333332 56788999998887 22211111 01112334555552  22 222222   24467788887764 43


Q ss_pred             eccccCC-CCCceeeeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEE---------------EEEeCCCCCCCCCCc
Q 043460          181 TRKVSVK-PRRPVSFYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEA---------------EIIEVPDKNNHPCDS  242 (368)
Q Consensus       181 ~~~~~~~-~~~p~~~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~---------------~~~~lP~~~~~~~~~  242 (368)
                      ....... ...+.     .++.+. +|.+...+. ++.|..+|+.+....               ..+..- .....  .
T Consensus       137 ~~~~~~~~h~~~v-----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--v  208 (377)
T 3dwl_C          137 VSKHLKRPLRSTI-----LSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW--V  208 (377)
T ss_dssp             CCEEECSSCCSCE-----EEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS--E
T ss_pred             eeeEeecccCCCe-----EEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce--E
Confidence            3321111 00000     122221 344333333 677888998644321               011110 11010  1


Q ss_pred             eeEEe-eCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCE
Q 043460          243 EVIGL-CKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDI  321 (368)
Q Consensus       243 ~~l~~-~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (368)
                      ..+.. .+|.+.+....+..+.||.+.....               ....+..+....        ..+.-+.+.+++.+
T Consensus       209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~---------------~~~~~~~~~~~~--------~~v~~~~~s~~~~~  265 (377)
T 3dwl_C          209 HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ---------------PPRALITVKLSQ--------LPLRSLLWANESAI  265 (377)
T ss_dssp             EEEEECTTSSCEEEEETTTEEC-CEECSTTS---------------CEEECCCEECSS--------SCEEEEEEEETTEE
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCCC---------------cceeeEeecCCC--------CceEEEEEcCCCCE
Confidence            22332 3677666666778999999987533               333333333111        22344567777776


Q ss_pred             EEEeeCCeEEEEECCCCeEEEec
Q 043460          322 IFLGSCDMIYRYHLKTNKMELFS  344 (368)
Q Consensus       322 v~~~~~~~~~~ydl~t~~~~~v~  344 (368)
                      +.......++.|+.....++...
T Consensus       266 l~~~~~~~~~~~~~~~~~~~~~~  288 (377)
T 3dwl_C          266 VAAGYNYSPILLQGNESGWAHTR  288 (377)
T ss_dssp             EEEESSSSEEEECCCC---CCSB
T ss_pred             EEEEcCCcEEEEEeCCCceEEEe
Confidence            66666677778888866654433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=82.88  E-value=28  Score=31.72  Aligned_cols=143  Identities=13%  Similarity=0.023  Sum_probs=76.3

Q ss_pred             CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460          104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK  183 (368)
Q Consensus       104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~  183 (368)
                      .+.|++.   ....+...++.+++...+-..    .....++.+|+. .  -+|+....  ....+..++..++..+...
T Consensus        87 ~~~l~~~---~~~~I~~i~~~~~~~~~~~~~----~~~~~gl~~d~~-~--~~ly~~D~--~~~~I~r~~~~g~~~~~~~  154 (386)
T 3v65_B           87 EPVLLFA---NRIDIRQVLPHRSEYTLLLNN----LENAIALDFHHR-R--ELVFWSDV--TLDRILRANLNGSNVEEVV  154 (386)
T ss_dssp             CCEEEEE---CBSCEEEECTTSCCCEEEECS----CSCEEEEEEETT-T--TEEEEEET--TTTEEEEEETTSCCEEEEE
T ss_pred             cceeEee---cCccceeeccCCCcEEEEecC----CCccEEEEEecC-C--CeEEEEeC--CCCcEEEEecCCCCcEEEE
Confidence            5566655   344666777766655544221    223567888873 2  23443332  3456777887776544432


Q ss_pred             ccCCCCCceeeeccceEE-EeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEEEECC
Q 043460          184 VSVKPRRPVSFYVLQSVY-SRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYASRNQ  259 (368)
Q Consensus       184 ~~~~~~~p~~~~~~~~v~-~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~~~~~  259 (368)
                      ..   .  .....+-++- . +|.|||... ...|.++|+...... .+. ......   ...++..  +|.|++.....
T Consensus       155 ~~---~--~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~-~l~-~~~l~~---P~giavdp~~g~ly~td~~~  223 (386)
T 3v65_B          155 ST---G--LESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRK-VLL-WQSLEK---PRAIALHPMEGTIYWTDWGN  223 (386)
T ss_dssp             CS---S--CSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCE-EEE-CSSCSC---EEEEEEETTTTEEEEEECSS
T ss_pred             eC---C--CCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceE-Eee-cCCCCC---CcEEEEEcCCCeEEEeccCC
Confidence            10   0  1111122333 3 789999876 578999999876544 332 111111   2234443  67788776543


Q ss_pred             CeEEEEEEccC
Q 043460          260 STLLIWQLDDH  270 (368)
Q Consensus       260 ~~~~IW~l~~~  270 (368)
                       .-.|++.+.+
T Consensus       224 -~~~I~r~~~d  233 (386)
T 3v65_B          224 -TPRIEASSMD  233 (386)
T ss_dssp             -SCEEEEEETT
T ss_pred             -CCEEEEEeCC
Confidence             2455665543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=82.59  E-value=19  Score=31.38  Aligned_cols=104  Identities=9%  Similarity=0.022  Sum_probs=61.0

Q ss_pred             CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeEEEEEEccCCCCCCCCCCcc
Q 043460          204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNK  281 (368)
Q Consensus       204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~  281 (368)
                      +|.|||... ...|..||+.++.-. .+..+..      ...++. .+|+|+++........|+.++..++         
T Consensus        42 ~g~lyv~d~~~~~I~~~d~~g~~~~-~~~~~~~------p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g---------  105 (306)
T 2p4o_A           42 DGTIFVTNHEVGEIVSITPDGNQQI-HATVEGK------VSGLAFTSNGDLVATGWNADSIPVVSLVKSDG---------  105 (306)
T ss_dssp             TSCEEEEETTTTEEEEECTTCCEEE-EEECSSE------EEEEEECTTSCEEEEEECTTSCEEEEEECTTS---------
T ss_pred             CCCEEEEeCCCCeEEEECCCCceEE-EEeCCCC------ceeEEEcCCCcEEEEeccCCcceEEEEcCCCC---------
Confidence            688999874 688999999886544 5555432      123333 4788888776544556777654333         


Q ss_pred             CCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCe
Q 043460          282 AASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNK  339 (368)
Q Consensus       282 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~  339 (368)
                            +.+.+..++  ...       ...-++.. .+..+|+.  ....++++|..+.+
T Consensus       106 ------~~~~~~~~~--~~~-------~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~  149 (306)
T 2p4o_A          106 ------TVETLLTLP--DAI-------FLNGITPL-SDTQYLTADSYRGAIWLIDVVQPS  149 (306)
T ss_dssp             ------CEEEEEECT--TCS-------CEEEEEES-SSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ------eEEEEEeCC--Ccc-------ccCccccc-CCCcEEEEECCCCeEEEEeCCCCc
Confidence                  454444332  110       11112223 34456665  35789999998753

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=82.40  E-value=29  Score=31.66  Aligned_cols=143  Identities=10%  Similarity=0.061  Sum_probs=68.6

Q ss_pred             CcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCcee
Q 043460          166 DPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEV  244 (368)
Q Consensus       166 ~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~  244 (368)
                      ...+.+|+.+++.-...-....       ..-.++.. +|.....+. ++.|..+|+.+.+....+....   .   ...
T Consensus       275 dg~i~vwd~~~~~~~~~~~~~~-------~~v~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~---~---~v~  340 (435)
T 1p22_A          275 DRTIKVWNTSTCEFVRTLNGHK-------RGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE---E---LVR  340 (435)
T ss_dssp             TSEEEEEETTTCCEEEEEECCS-------SCEEEEEE-ETTEEEEEETTSCEEEEETTTCCEEEEECCCS---S---CEE
T ss_pred             CCeEEEEECCcCcEEEEEcCCC-------CcEEEEEe-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc---C---cEE
Confidence            4568888887764221110000       00124555 555444444 7889999999876541332111   1   112


Q ss_pred             EEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEE
Q 043460          245 IGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFL  324 (368)
Q Consensus       245 l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  324 (368)
                      ....+|...+....+..+.||-+......          ........+..+....        ..+.-+.+  ++..++.
T Consensus       341 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~----------~~~~~~~~~~~~~~h~--------~~v~~l~~--~~~~l~s  400 (435)
T 1p22_A          341 CIRFDNKRIVSGAYDGKIKVWDLVAALDP----------RAPAGTLCLRTLVEHS--------GRVFRLQF--DEFQIVS  400 (435)
T ss_dssp             EEECCSSEEEEEETTSCEEEEEHHHHTST----------TSCTTTTEEEEECCCS--------SCCCCEEE--CSSCEEE
T ss_pred             EEEecCCEEEEEeCCCcEEEEECCCCCCc----------cccccchheeeccCCC--------CCeEEEEe--CCCEEEE
Confidence            22337877777778889999998764210          0000122333332110        11111233  4555554


Q ss_pred             e-eCCeEEEEECCCCeEEE
Q 043460          325 G-SCDMIYRYHLKTNKMEL  342 (368)
Q Consensus       325 ~-~~~~~~~ydl~t~~~~~  342 (368)
                      . .++.+..+|+.+.....
T Consensus       401 ~s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          401 SSHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             CCSSSEEEEEC--------
T ss_pred             EeCCCEEEEEECCCCCCcc
Confidence            4 57789999998876543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=81.93  E-value=23  Score=30.07  Aligned_cols=201  Identities=9%  Similarity=0.118  Sum_probs=101.8

Q ss_pred             cCCcEEEEeecCCCeeEEEEcccCccceecCCCC--cCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc
Q 043460          102 CCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAR--EDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW  179 (368)
Q Consensus       102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~--~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W  179 (368)
                      +.+|-+++... ....+.+|||..+....++...  ........++.+++.  +. +++..... ....+.+|+. ++..
T Consensus        38 ~~~g~l~v~~~-~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~--~g-~l~v~~~~-~~~~i~~~d~-~g~~  111 (286)
T 1q7f_A           38 NAQNDIIVADT-NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRN--SG-DIIVTERS-PTHQIQIYNQ-YGQF  111 (286)
T ss_dssp             CTTCCEEEEEG-GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETT--TT-EEEEEECG-GGCEEEEECT-TSCE
T ss_pred             CCCCCEEEEEC-CCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcC--CC-eEEEEcCC-CCCEEEEECC-CCcE
Confidence            34555555543 4557889998865555555322  111223456676431  22 23332211 1356788884 4432


Q ss_pred             e-eccccCCCCCceeeeccceEEE-eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEE
Q 043460          180 I-TRKVSVKPRRPVSFYVLQSVYS-RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYA  255 (368)
Q Consensus       180 ~-~~~~~~~~~~p~~~~~~~~v~~-~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~  255 (368)
                      . ....  ..   ....  .++.+ .+|.+|.... ...|..||...+... .+..+.....   ...++. .+|.|++.
T Consensus       112 ~~~~~~--~~---~~~~--~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~---p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          112 VRKFGA--TI---LQHP--RGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH-KFGCSKHLEF---PNGVVVNDKQEIFIS  180 (286)
T ss_dssp             EEEECT--TT---CSCE--EEEEECTTSCEEEEETTTTEEEEECTTSCEEE-EEECTTTCSS---EEEEEECSSSEEEEE
T ss_pred             EEEecC--cc---CCCc--eEEEEeCCCCEEEEECCCCEEEEEcCCCCEEE-EeCCCCccCC---cEEEEECCCCCEEEE
Confidence            2 1211  00   0111  12332 1688776654 578999998776666 5544322111   223443 46888877


Q ss_pred             EECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCC-eEEEE
Q 043460          256 SRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCD-MIYRY  333 (368)
Q Consensus       256 ~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~y  333 (368)
                      ......+.+|..+.                  ...  ..+....  . .   ....-+++.+++.+++.. ... .+..|
T Consensus       181 ~~~~~~i~~~~~~g------------------~~~--~~~~~~g--~-~---~~p~~i~~d~~G~l~v~~~~~~~~i~~~  234 (286)
T 1q7f_A          181 DNRAHCVKVFNYEG------------------QYL--RQIGGEG--I-T---NYPIGVGINSNGEILIADNHNNFNLTIF  234 (286)
T ss_dssp             EGGGTEEEEEETTC------------------CEE--EEESCTT--T-S---CSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             ECCCCEEEEEcCCC------------------CEE--EEEccCC--c-c---CCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence            76667787775422                  221  2222110  0 0   112335566666644443 233 89999


Q ss_pred             ECCCCeEEEecc
Q 043460          334 HLKTNKMELFST  345 (368)
Q Consensus       334 dl~t~~~~~v~~  345 (368)
                      |.+.+.++.+..
T Consensus       235 ~~~g~~~~~~~~  246 (286)
T 1q7f_A          235 TQDGQLISALES  246 (286)
T ss_dssp             CTTSCEEEEEEE
T ss_pred             CCCCCEEEEEcc
Confidence            988777776654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=81.69  E-value=24  Score=31.07  Aligned_cols=47  Identities=11%  Similarity=0.150  Sum_probs=31.9

Q ss_pred             CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEE
Q 043460          204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYAS  256 (368)
Q Consensus       204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~  256 (368)
                      +|.+||... ...|..+|+.+++.. .+..|...     .......+|++.+..
T Consensus        60 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v-----~~i~~~~dg~l~v~~  107 (326)
T 2ghs_A           60 SGTAWWFNILERELHELHLASGRKT-VHALPFMG-----SALAKISDSKQLIAS  107 (326)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCE-----EEEEEEETTEEEEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEE-EEECCCcc-----eEEEEeCCCeEEEEE
Confidence            478999875 678999999998887 66665321     112224578876654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=81.31  E-value=24  Score=29.84  Aligned_cols=110  Identities=12%  Similarity=0.046  Sum_probs=55.1

Q ss_pred             CCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceEEEe--CCeEEEEEe-CCeEEE
Q 043460          142 PPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSR--GGILYNLTY-RSTILR  218 (368)
Q Consensus       142 ~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~--~G~lywl~~-~~~il~  218 (368)
                      ..++.+|+. . . +++....  ....+.+|+..++.-+...   ...  ..  .-.++.+.  +|.+||... ...|.+
T Consensus        38 ~~gi~~d~~-~-~-~ly~~d~--~~~~I~~~~~~g~~~~~~~---~~~--~~--~p~~ia~d~~~~~lyv~d~~~~~I~~  105 (267)
T 1npe_A           38 IIGLAFDCV-D-K-VVYWTDI--SEPSIGRASLHGGEPTTII---RQD--LG--SPEGIALDHLGRTIFWTDSQLDRIEV  105 (267)
T ss_dssp             EEEEEEETT-T-T-EEEEEET--TTTEEEEEESSSCCCEEEE---CTT--CC--CEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEEEecC-C-C-EEEEEEC--CCCEEEEEecCCCCcEEEE---ECC--CC--CccEEEEEecCCeEEEEECCCCEEEE
Confidence            357777872 2 2 3333322  3457788887665422211   110  11  11233331  578999876 578999


Q ss_pred             EEcCCCeEEEEEeCCCCCCCCCCceeEEee--CCeEEEEEECCCeEEEEEEc
Q 043460          219 YNIEALSEAEIIEVPDKNNHPCDSEVIGLC--KGALNYASRNQSTLLIWQLD  268 (368)
Q Consensus       219 fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~--~G~L~~~~~~~~~~~IW~l~  268 (368)
                      +|+...... .+ .+.....   ...++..  +|.|++.......-.|++..
T Consensus       106 ~~~~g~~~~-~~-~~~~~~~---P~~i~vd~~~g~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A          106 AKMDGTQRR-VL-FDTGLVN---PRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             EETTSCSCE-EE-ECSSCSS---EEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             EEcCCCCEE-EE-EECCCCC---ccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence            999865544 33 2222111   2233333  57888877542223344443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=80.65  E-value=27  Score=32.12  Aligned_cols=117  Identities=10%  Similarity=0.076  Sum_probs=72.5

Q ss_pred             CCeEEEEEeCCeEEEEEcCCCeEE--EEEeC-C-----CC-CCCCCCceeEEee--CCeEEEEEEC-------CCeEEEE
Q 043460          204 GGILYNLTYRSTILRYNIEALSEA--EIIEV-P-----DK-NNHPCDSEVIGLC--KGALNYASRN-------QSTLLIW  265 (368)
Q Consensus       204 ~G~lywl~~~~~il~fD~~~~~~~--~~~~l-P-----~~-~~~~~~~~~l~~~--~G~L~~~~~~-------~~~~~IW  265 (368)
                      +|.++|.+..+.+.++|..++.-.  ..+.+ .     .. ....  ...++..  .++||+....       +..=+||
T Consensus       237 dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g--~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~  314 (386)
T 3sjl_D          237 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG--WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV  314 (386)
T ss_dssp             TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECS--SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred             CCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCC--cceeeECCCCCeEEEEeccccccccCCCCCEEE
Confidence            788999888889999999887543  11221 0     00 0011  1123333  4577776542       1246899


Q ss_pred             EEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCC-EEEEe--eCCeEEEEECCCCeEE-
Q 043460          266 QLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSD-IIFLG--SCDMIYRYHLKTNKME-  341 (368)
Q Consensus       266 ~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~--~~~~~~~ydl~t~~~~-  341 (368)
                      +++-.                 .+..+.+|++..-         ..-+++.+++. .+|..  ....+.+||..|++.. 
T Consensus       315 viD~~-----------------t~kv~~~i~vg~~---------~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~  368 (386)
T 3sjl_D          315 VLDAK-----------------TGERLAKFEMGHE---------IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR  368 (386)
T ss_dssp             EEETT-----------------TCCEEEEEEEEEE---------ECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             EEECC-----------------CCeEEEEEECCCC---------cceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence            99984                 5667777774421         22366777775 77775  3678999999999965 


Q ss_pred             Eecc-CCC
Q 043460          342 LFST-RSP  348 (368)
Q Consensus       342 ~v~~-~~~  348 (368)
                      .+.. +.+
T Consensus       369 ~i~~~~~p  376 (386)
T 3sjl_D          369 SVNQLGHG  376 (386)
T ss_dssp             EECCCCSS
T ss_pred             EecCCCCC
Confidence            4554 554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=80.58  E-value=27  Score=29.99  Aligned_cols=181  Identities=7%  Similarity=0.038  Sum_probs=96.3

Q ss_pred             CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460          114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS  193 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~  193 (368)
                      ....+.+||..+++......... .......+.+.|.  +.+ ++. ..  ....+.+|+.+++.-...-.... . +. 
T Consensus       117 ~d~~i~~~d~~~~~~~~~~~~~~-~~~~i~~~~~~~~--~~~-l~~-~~--~dg~v~~~d~~~~~~~~~~~~~~-~-~i-  186 (337)
T 1gxr_A          117 EASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPD--SKV-CFS-CC--SDGNIAVWDLHNQTLVRQFQGHT-D-GA-  186 (337)
T ss_dssp             SSSEEEEEECCCC--EEEEEEEC-SSSCEEEEEECTT--SSE-EEE-EE--TTSCEEEEETTTTEEEEEECCCS-S-CE-
T ss_pred             CCCcEEEEECCCCCcceeeeccc-CCCceEEEEECCC--CCE-EEE-Ee--CCCcEEEEeCCCCceeeeeeccc-C-ce-
Confidence            56788999998877433221110 1112335566662  232 222 22  24568889988775332211100 0 01 


Q ss_pred             eeccceEEEe-CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeEEEEEEccC
Q 043460          194 FYVLQSVYSR-GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTLLIWQLDDH  270 (368)
Q Consensus       194 ~~~~~~v~~~-~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~~IW~l~~~  270 (368)
                          .++.+. +|.....+. ++.|..+|+.+.+....+..+..      ...+.. .+|...++...+..+.+|.+...
T Consensus       187 ----~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~------v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~  256 (337)
T 1gxr_A          187 ----SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ------IFSLGYCPTGEWLAVGMESSNVEVLHVNKP  256 (337)
T ss_dssp             ----EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC------EEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred             ----EEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCc------eEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence                112221 454444443 78899999998776524433221      123333 36777777777788999987663


Q ss_pred             CCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECCCCeEEE
Q 043460          271 RHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLKTNKMEL  342 (368)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~t~~~~~  342 (368)
                      .                ..    .+...  .      ..+.-+.+.+++..++.. .+..+..||+++++...
T Consensus       257 ~----------------~~----~~~~~--~------~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          257 D----------------KY----QLHLH--E------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             C----------------EE----EECCC--S------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             C----------------eE----EEcCC--c------cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence            1                11    11100  0      224445677777766665 56689999999887653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=80.54  E-value=49  Score=32.96  Aligned_cols=156  Identities=12%  Similarity=0.118  Sum_probs=86.8

Q ss_pred             CCeEEEEEEEeC-CCcEEEEEeCCCC--C-ceeccccCCCCCceeeeccceEEEeCCeEEEEEe----CCeEEEEEcCC-
Q 043460          153 SHYKIIRFLRAR-MDPEVDIFSSENK--T-WITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY----RSTILRYNIEA-  223 (368)
Q Consensus       153 ~~ykvv~~~~~~-~~~~~~vyss~~~--~-W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~----~~~il~fD~~~-  223 (368)
                      +.|-++...... ....+.+.+..++  . |+.+......   .    ...+.-.++.+|+...    ...|..+|+.+ 
T Consensus       279 G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---~----~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          279 GRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA---Q----WDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             SCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS---C----EEEEEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             CCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc---e----EEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            445444433211 2456777777776  6 7766522110   0    1112232677888876    34599999988 


Q ss_pred             -CeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccc
Q 043460          224 -LSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGN  302 (368)
Q Consensus       224 -~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~  302 (368)
                       +.|+.++  |... ..  ...+...++.|++....+...+||.++-. +               .  ....+.++..  
T Consensus       352 ~~~~~~l~--~~~~-~~--l~~~~~~~~~lv~~~~~dg~~~l~~~~~~-g---------------~--~~~~l~~~~~--  406 (741)
T 1yr2_A          352 TPRFDTVV--PESK-DN--LESVGIAGNRLFASYIHDAKSQVLAFDLD-G---------------K--PAGAVSLPGI--  406 (741)
T ss_dssp             SCEEEEEE--CCCS-SE--EEEEEEEBTEEEEEEEETTEEEEEEEETT-S---------------C--EEEECBCSSS--
T ss_pred             ccccEEEe--cCCC-Ce--EEEEEEECCEEEEEEEECCEEEEEEEeCC-C---------------C--ceeeccCCCC--
Confidence             5787344  3221 11  11234458888888887778899988753 2               2  1223332111  


Q ss_pred             cCccccceEEEEEecCCCEEEEe-----eCCeEEEEECCCCeEEEecc
Q 043460          303 KLHVFGLTRFYNIHPNSDIIFLG-----SCDMIYRYHLKTNKMELFST  345 (368)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~ydl~t~~~~~v~~  345 (368)
                           ..+..+++.++++.+++.     ....++.||+++++.+.+..
T Consensus       407 -----~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~  449 (741)
T 1yr2_A          407 -----GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEP  449 (741)
T ss_dssp             -----CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECSC
T ss_pred             -----eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEec
Confidence                 112233444566655544     34689999999998776643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=80.49  E-value=24  Score=29.43  Aligned_cols=183  Identities=11%  Similarity=0.072  Sum_probs=97.3

Q ss_pred             CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCC-CCceeccccCCCCCce
Q 043460          114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSEN-KTWITRKVSVKPRRPV  192 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~-~~W~~~~~~~~~~~p~  192 (368)
                      ....+++||+.+++...+....    .....+.+.|.  +.+-++  ..   ...+.+++..+ +.............  
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~~~----~~v~~~~~spd--g~~l~~--~~---~~~i~~~d~~~~~~~~~~~~~~~~~~--   86 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQTP----ELFEAPNWSPD--GKYLLL--NS---EGLLYRLSLAGDPSPEKVDTGFATIC--   86 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEEES----SCCEEEEECTT--SSEEEE--EE---TTEEEEEESSSCCSCEECCCTTCCCB--
T ss_pred             cceeEEEEeCCCCceeeeccCC----cceEeeEECCC--CCEEEE--Ec---CCeEEEEeCCCCCCceEecccccccc--
Confidence            4568999999999887665432    13345667762  343333  22   34788999988 77655432111010  


Q ss_pred             eeeccceEEEeCCe-EEEEEe----CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEee-CCe-EEEEEECCCeEEEE
Q 043460          193 SFYVLQSVYSRGGI-LYNLTY----RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLC-KGA-LNYASRNQSTLLIW  265 (368)
Q Consensus       193 ~~~~~~~v~~~~G~-lywl~~----~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~~~IW  265 (368)
                        ...-...- +|. +++...    ...|..+|..+.+.. .+.....      ...+..+ +|+ |++....+..+.||
T Consensus        87 --~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~------~~~~~~spdg~~l~~~~~~~~~~~l~  156 (297)
T 2ojh_A           87 --NNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGTPR-LMTKNLP------SYWHGWSPDGKSFTYCGIRDQVFDIY  156 (297)
T ss_dssp             --CSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCCCE-ECCSSSS------EEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             --ccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCceE-EeecCCC------ccceEECCCCCEEEEEECCCCceEEE
Confidence              00111222 444 333331    467888888776655 3322211      1122333 565 44455566789999


Q ss_pred             EEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe----eCCeEEEEECCCCeEE
Q 043460          266 QLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG----SCDMIYRYHLKTNKME  341 (368)
Q Consensus       266 ~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~ydl~t~~~~  341 (368)
                      .++..+.               ....   +...  .      ....-+.+.+++..+++.    ....++.+++.+++.+
T Consensus       157 ~~~~~~~---------------~~~~---~~~~--~------~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~  210 (297)
T 2ojh_A          157 SMDIDSG---------------VETR---LTHG--E------GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE  210 (297)
T ss_dssp             EEETTTC---------------CEEE---CCCS--S------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred             EEECCCC---------------cceE---cccC--C------CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence            9876433               2221   1100  0      112334566677766554    2346777777777776


Q ss_pred             Eecc
Q 043460          342 LFST  345 (368)
Q Consensus       342 ~v~~  345 (368)
                      .+..
T Consensus       211 ~~~~  214 (297)
T 2ojh_A          211 RITD  214 (297)
T ss_dssp             ECCC
T ss_pred             EEec
Confidence            6654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=80.43  E-value=28  Score=30.19  Aligned_cols=144  Identities=9%  Similarity=-0.000  Sum_probs=70.8

Q ss_pred             CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc--eeccccCCCCCce
Q 043460          115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW--ITRKVSVKPRRPV  192 (368)
Q Consensus       115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W--~~~~~~~~~~~p~  192 (368)
                      ...+.|||..+++...+-...  .......+.+.|...+.-.++. ..  ....+.+|+..++.-  .... ...  .+.
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~-~~--~dg~i~iwd~~~~~~~~~~~~-~~~--~~v  114 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIE--KAKPIKCGTFGATSLQQRYLAT-GD--FGGNLHIWNLEAPEMPVYSVK-GHK--EII  114 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEE--ESSCEEEEECTTCCTTTCCEEE-EE--TTSCEEEECTTSCSSCSEEEC-CCS--SCE
T ss_pred             CcEEEEEeCCCCcccceeeec--ccCcEEEEEEcCCCCCCceEEE-ec--CCCeEEEEeCCCCCccEEEEE-ecc--cce
Confidence            568889998888765432211  1112344556652101122222 22  245688888887651  1111 000  001


Q ss_pred             e---eeccceEEEeCCeEEEEEe-CCeEEEEEcCCCe--EEEEEeCCCCCCCCCCceeEE-----eeCCeEEEEEECCCe
Q 043460          193 S---FYVLQSVYSRGGILYNLTY-RSTILRYNIEALS--EAEIIEVPDKNNHPCDSEVIG-----LCKGALNYASRNQST  261 (368)
Q Consensus       193 ~---~~~~~~v~~~~G~lywl~~-~~~il~fD~~~~~--~~~~~~lP~~~~~~~~~~~l~-----~~~G~L~~~~~~~~~  261 (368)
                      .   +...-+..- +|.....+. ++.|..+|+.+.+  .. .+......... ....+.     ..+|.+.++...+..
T Consensus       115 ~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~~~~l~~~~~d~~  191 (357)
T 3i2n_A          115 NAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVA-NMEPVQGENKR-DCWTVAFGNAYNQEERVVCAGYDNGD  191 (357)
T ss_dssp             EEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSE-EECCCTTSCCC-CEEEEEEECCCC-CCCEEEEEETTSE
T ss_pred             EEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcce-eccccCCCCCC-ceEEEEEEeccCCCCCEEEEEccCCe
Confidence            1   000001123 454444443 7789999999875  33 44333221111 011222     247787777778889


Q ss_pred             EEEEEEcc
Q 043460          262 LLIWQLDD  269 (368)
Q Consensus       262 ~~IW~l~~  269 (368)
                      +.+|-+..
T Consensus       192 i~i~d~~~  199 (357)
T 3i2n_A          192 IKLFDLRN  199 (357)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECcc
Confidence            99998766

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=80.25  E-value=44  Score=32.34  Aligned_cols=196  Identities=10%  Similarity=-0.004  Sum_probs=106.8

Q ss_pred             CcEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceec
Q 043460          104 NGLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITR  182 (368)
Q Consensus       104 ~Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~  182 (368)
                      ++++.+... ...++.|+|+.|++... +|-..     ...++.+.|  .+.|-.+ ..   ..-.+.+|+..+.+-+..
T Consensus       166 ~~~~~V~~~-~~~~V~viD~~t~~v~~~i~~g~-----~p~~v~~Sp--DGr~lyv-~~---~dg~V~viD~~~~t~~~v  233 (567)
T 1qks_A          166 ENLFSVTLR-DAGQIALIDGSTYEIKTVLDTGY-----AVHISRLSA--SGRYLFV-IG---RDGKVNMIDLWMKEPTTV  233 (567)
T ss_dssp             GGEEEEEET-TTTEEEEEETTTCCEEEEEECSS-----CEEEEEECT--TSCEEEE-EE---TTSEEEEEETTSSSCCEE
T ss_pred             CceEEEEeC-CCCeEEEEECCCCeEEEEEeCCC-----CccceEECC--CCCEEEE-Ec---CCCeEEEEECCCCCCcEe
Confidence            456665553 67789999999987664 44321     223667777  2444333 22   244788999852222222


Q ss_pred             cccCCCCCceeeeccceEEEe-----CC-eEEEEEe-CCeEEEEEcCCCeEEEEEeCCCC-CCC-----CCCceeEEee-
Q 043460          183 KVSVKPRRPVSFYVLQSVYSR-----GG-ILYNLTY-RSTILRYNIEALSEAEIIEVPDK-NNH-----PCDSEVIGLC-  248 (368)
Q Consensus       183 ~~~~~~~~p~~~~~~~~v~~~-----~G-~lywl~~-~~~il~fD~~~~~~~~~~~lP~~-~~~-----~~~~~~l~~~-  248 (368)
                      ........|.      .+.+.     +| .+|.... ...+.+||..+.+-...+++... ...     ......+..+ 
T Consensus       234 ~~i~~G~~P~------~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~  307 (567)
T 1qks_A          234 AEIKIGSEAR------SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH  307 (567)
T ss_dssp             EEEECCSEEE------EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred             EEEecCCCCc------eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC
Confidence            2111111111      23332     45 4565555 68899999888766535655321 110     0001122222 


Q ss_pred             CCeEEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--e
Q 043460          249 KGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--S  326 (368)
Q Consensus       249 ~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~  326 (368)
                      ++...++... ..-+||.++-...               ...++..|+...+         .+-.++.+++..+|..  .
T Consensus       308 ~~~~~vv~~~-~~g~v~~vd~~~~---------------~~~~v~~i~~~~~---------~~d~~~~pdgr~~~va~~~  362 (567)
T 1qks_A          308 YRPEFIVNVK-ETGKILLVDYTDL---------------NNLKTTEISAERF---------LHDGGLDGSHRYFITAANA  362 (567)
T ss_dssp             SSSEEEEEET-TTTEEEEEETTCS---------------SEEEEEEEECCSS---------EEEEEECTTSCEEEEEEGG
T ss_pred             CCCEEEEEec-CCCeEEEEecCCC---------------ccceeeeeecccc---------ccCceECCCCCEEEEEeCC
Confidence            3455555553 2335666665433               4555555653222         2335677888877776  5


Q ss_pred             CCeEEEEECCCCeEEE
Q 043460          327 CDMIYRYHLKTNKMEL  342 (368)
Q Consensus       327 ~~~~~~ydl~t~~~~~  342 (368)
                      ..++.++|.+|+++..
T Consensus       363 sn~V~ViD~~t~kl~~  378 (567)
T 1qks_A          363 RNKLVVIDTKEGKLVA  378 (567)
T ss_dssp             GTEEEEEETTTTEEEE
T ss_pred             CCeEEEEECCCCcEEE
Confidence            6789999999998754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=80.11  E-value=32  Score=30.63  Aligned_cols=205  Identities=9%  Similarity=-0.017  Sum_probs=97.7

Q ss_pred             CcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460          104 NGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK  183 (368)
Q Consensus       104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~  183 (368)
                      +|.+++..  ....+.+||..+++....-..   .......+.+.|.  +. .++. ..  ....+.+|+.+++.-...-
T Consensus       217 ~~~~~~~~--~~g~i~~~d~~~~~~~~~~~~---~~~~i~~~~~~~~--~~-~l~~-~~--~d~~i~i~d~~~~~~~~~~  285 (425)
T 1r5m_A          217 DDKFVIPG--PKGAIFVYQITEKTPTGKLIG---HHGPISVLEFNDT--NK-LLLS-AS--DDGTLRIWHGGNGNSQNCF  285 (425)
T ss_dssp             TTEEEEEC--GGGCEEEEETTCSSCSEEECC---CSSCEEEEEEETT--TT-EEEE-EE--TTSCEEEECSSSBSCSEEE
T ss_pred             CCEEEEEc--CCCeEEEEEcCCCceeeeecc---CCCceEEEEECCC--CC-EEEE-Ec--CCCEEEEEECCCCccceEe
Confidence            45555544  566889999888654432111   1122345666662  23 2222 22  2456888888775432221


Q ss_pred             ccCCCCCceeeeccceEEEeCCeEEEEEeCCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEECCCeE
Q 043460          184 VSVKPRRPVSFYVLQSVYSRGGILYNLTYRSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASRNQSTL  262 (368)
Q Consensus       184 ~~~~~~~p~~~~~~~~v~~~~G~lywl~~~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~  262 (368)
                      ....     .....-...- +|.+.-...++.|..+|+.+.+....+......     ...+.. .+|.+.++...+..+
T Consensus       286 ~~~~-----~~i~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----i~~~~~s~~~~~l~~~~~dg~i  354 (425)
T 1r5m_A          286 YGHS-----QSIVSASWVG-DDKVISCSMDGSVRLWSLKQNTLLALSIVDGVP-----IFAGRISQDGQKYAVAFMDGQV  354 (425)
T ss_dssp             CCCS-----SCEEEEEEET-TTEEEEEETTSEEEEEETTTTEEEEEEECTTCC-----EEEEEECTTSSEEEEEETTSCE
T ss_pred             cCCC-----ccEEEEEECC-CCEEEEEeCCCcEEEEECCCCcEeEecccCCcc-----EEEEEEcCCCCEEEEEECCCeE
Confidence            1000     0000111222 552222223789999999887765233332111     122333 367777777777899


Q ss_pred             EEEEEccCCCCC-CCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEEECC
Q 043460          263 LIWQLDDHRHHS-NSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRYHLK  336 (368)
Q Consensus       263 ~IW~l~~~~~~~-~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ydl~  336 (368)
                      .||.+....... ...++..+.-.......+..+..     ... ...+.-+.+.+++..++.. .++.+..||++
T Consensus       355 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          355 NVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS-----SQD-NDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEECHHHHC--------------CEECCEEEEECC-----TTC-CCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEEECCCCccceeeeecccccccCcccchhhhhhcC-----ccc-CCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            999987642100 00000000000001112222221     100 0034556677788766665 56678888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	368
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	8e-05

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 8e-05
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 6  LSEDLITEILSRLPVKSVVGFKIVSKTWNNLIS 38
          L ++L+  I S L +  ++    V K W  L S
Sbjct: 4  LPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	368
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.59
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.56
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.52
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.45
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.25
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.65
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	91.03
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	90.28
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	89.59
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	88.33
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	84.98
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	81.34
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	80.68
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	80.65
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	80.52
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	80.49
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	80.17

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=8.6e-12  Score=75.98  Aligned_cols=37  Identities=27%  Similarity=0.387  Sum_probs=35.3

Q ss_pred             CCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCc
Q 043460            5 YLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVC   41 (368)
Q Consensus         5 ~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~   41 (368)
                      .||+|++.+||++||+++++|+++|||+|+.++.++.
T Consensus         3 ~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~   39 (41)
T d1fs1a1           3 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES   39 (41)
T ss_dssp             SSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGG
T ss_pred             cCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Confidence            6999999999999999999999999999999998865

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4.1e-06  Score=72.58  Aligned_cols=189  Identities=12%  Similarity=0.089  Sum_probs=117.7

Q ss_pred             CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---CCcEEEEEeCCCCCceeccccCCCCCc
Q 043460          115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---MDPEVDIFSSENKTWITRKVSVKPRRP  191 (368)
Q Consensus       115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---~~~~~~vyss~~~~W~~~~~~~~~~~p  191 (368)
                      ...+.++||.|.+|..+|+++....  .++....     +-|++.+....   .....++|+..++.|........    
T Consensus        69 ~~~~~~yd~~~~~w~~~~~~p~~r~--~~~~~~~-----~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  137 (288)
T d1zgka1          69 SSALDCYNPMTNQWSPCAPMSVPRN--RIGVGVI-----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT----  137 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCB--TCEEEEE-----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS----
T ss_pred             cchhhhcccccccccccccccceec--ceecccc-----ceeeEEecceecccccceeeeeccccCcccccccccc----
Confidence            3468899999999999998774332  2222211     11344433222   34568899999999988764322    


Q ss_pred             eeeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC---CeE
Q 043460          192 VSFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ---STL  262 (368)
Q Consensus       192 ~~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~  262 (368)
                       .......+.. ++.+|...+      ...+..||+.+.+|. ....+.....   .......++++++.....   ..-
T Consensus       138 -~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~i~GG~~~~~~~~  211 (288)
T d1zgka1         138 -RRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWR-MITAMNTIRS---GAGVCVLHNCIYAAGGYDGQDQLN  211 (288)
T ss_dssp             -CCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEE-ECCCCSSCCB---SCEEEEETTEEEEECCBCSSSBCC
T ss_pred             -ccccceeeee-eecceEecCcccccccceEEEeeccccccc-cccccccccc---cccccceeeeEEEecCcccccccc
Confidence             1123335677 888888765      467899999999999 5544433222   335667789988887622   223


Q ss_pred             EEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe------eCCeEEEEECC
Q 043460          263 LIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG------SCDMIYRYHLK  336 (368)
Q Consensus       263 ~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~ydl~  336 (368)
                      ..|..+...+               +|+.+..++.....        .. .++. ++.++++.      ....+++||++
T Consensus       212 ~~~~~~~~~~---------------~~~~~~~~p~~r~~--------~~-~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~  266 (288)
T d1zgka1         212 SVERYDVETE---------------TWTFVAPMKHRRSA--------LG-ITVH-QGRIYVLGGYDGHTFLDSVECYDPD  266 (288)
T ss_dssp             CEEEEETTTT---------------EEEECCCCSSCCBS--------CE-EEEE-TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             ceeeeeecce---------------eeecccCccCcccc--------eE-EEEE-CCEEEEEecCCCCeecceEEEEECC
Confidence            5566655555               78887654422111        11 1222 44444442      23468999999


Q ss_pred             CCeEEEecc
Q 043460          337 TNKMELFST  345 (368)
Q Consensus       337 t~~~~~v~~  345 (368)
                      +++|+.+..
T Consensus       267 ~~~W~~~~~  275 (288)
T d1zgka1         267 TDTWSEVTR  275 (288)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEEECCC
Confidence            999999986

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.3e-06  Score=74.23  Aligned_cols=189  Identities=10%  Similarity=0.023  Sum_probs=115.7

Q ss_pred             CeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC-------CCcEEEEEeCCCCCceeccccCC
Q 043460          115 KHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR-------MDPEVDIFSSENKTWITRKVSVK  187 (368)
Q Consensus       115 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~-------~~~~~~vyss~~~~W~~~~~~~~  187 (368)
                      -..+.++||.|++|..+|++|....  .++.....    + +++.++...       ....+++|+..+++|+..+..+.
T Consensus        18 ~~~~~~yd~~t~~W~~~~~~p~~R~--~~~~~~~~----~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~   90 (288)
T d1zgka1          18 LSYLEAYNPSNGTWLRLADLQVPRS--GLAGCVVG----G-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV   90 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCB--SCEEEEET----T-EEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS
T ss_pred             CceEEEEECCCCeEEECCCCCCccc--eeEEEEEC----C-EEEEEeCcccCCCCccccchhhhcccccccccccccccc
Confidence            3467799999999999988774332  22323221    1 444443321       34578999999999999875432


Q ss_pred             CCCceeeeccceEEEeCCeEEEEEe------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC--
Q 043460          188 PRRPVSFYVLQSVYSRGGILYNLTY------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ--  259 (368)
Q Consensus       188 ~~~p~~~~~~~~v~~~~G~lywl~~------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~--  259 (368)
                           .-....++.+ +|.+|.+.+      ......+|+.+.+|. ..+.+.....   ....+..++.++++....  
T Consensus        91 -----~r~~~~~~~~-~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~---~~~~~~~~~~~~~~GG~~~~  160 (288)
T d1zgka1          91 -----PRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWH-LVAPMLTRRI---GVGVAVLNRLLYAVGGFDGT  160 (288)
T ss_dssp             -----CCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEE-ECCCCSSCCB---SCEEEEETTEEEEECCBCSS
T ss_pred             -----eecceecccc-ceeeEEecceecccccceeeeeccccCccc-cccccccccc---cceeeeeeecceEecCcccc
Confidence                 1133446888 999999875      466889999999998 4433322211   335567788888877621  


Q ss_pred             -CeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe------eCCeEEE
Q 043460          260 -STLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG------SCDMIYR  332 (368)
Q Consensus       260 -~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~  332 (368)
                       ..-.++..+...+               +|............         ... +..++.+.++.      .......
T Consensus       161 ~~~~~~~~~d~~~~---------------~~~~~~~~~~~~~~---------~~~-~~~~~~i~i~GG~~~~~~~~~~~~  215 (288)
T d1zgka1         161 NRLNSAECYYPERN---------------EWRMITAMNTIRSG---------AGV-CVLHNCIYAAGGYDGQDQLNSVER  215 (288)
T ss_dssp             CBCCCEEEEETTTT---------------EEEECCCCSSCCBS---------CEE-EEETTEEEEECCBCSSSBCCCEEE
T ss_pred             cccceEEEeecccc---------------cccccccccccccc---------ccc-cceeeeEEEecCccccccccceee
Confidence             1234555555444               77765443311100         111 12223333332      2357899


Q ss_pred             EECCCCeEEEecc
Q 043460          333 YHLKTNKMELFST  345 (368)
Q Consensus       333 ydl~t~~~~~v~~  345 (368)
                      ||..+++|+.+..
T Consensus       216 ~~~~~~~~~~~~~  228 (288)
T d1zgka1         216 YDVETETWTFVAP  228 (288)
T ss_dssp             EETTTTEEEECCC
T ss_pred             eeecceeeecccC
Confidence            9999999999876

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.3e-08  Score=73.85  Aligned_cols=43  Identities=21%  Similarity=0.201  Sum_probs=38.5

Q ss_pred             CCCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCchhhhh
Q 043460            4 IYLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCIPRIL   46 (368)
Q Consensus         4 ~~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f~~~~   46 (368)
                      ..||+||+.+||+.||+++|+++++|||+|+.++.++.+=+.+
T Consensus        20 ~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~   62 (102)
T d2ovrb1          20 SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREK   62 (102)
T ss_dssp             TSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHH
T ss_pred             hhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            4699999999999999999999999999999999998764333

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=4.2e-08  Score=72.07  Aligned_cols=37  Identities=24%  Similarity=0.419  Sum_probs=34.3

Q ss_pred             CCCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcC-Cc
Q 043460            5 YLSEDLITEILSRLPVKSVVGFKIVSKTWNNLISK-VC   41 (368)
Q Consensus         5 ~LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~-~~   41 (368)
                      .||+|++.+||+.|++++|++++.|||+|+.++++ +.
T Consensus         8 ~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~   45 (100)
T d1nexb1           8 SLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTS   45 (100)
T ss_dssp             HSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSH
T ss_pred             hCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH
Confidence            69999999999999999999999999999999864 54

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.4e-07  Score=70.09  Aligned_cols=37  Identities=27%  Similarity=0.387  Sum_probs=34.5

Q ss_pred             CCHHHHHHHHcCCCchhhHHHhhhhHHHHhhhcCCch
Q 043460            6 LSEDLITEILSRLPVKSVVGFKIVSKTWNNLISKVCI   42 (368)
Q Consensus         6 LP~Dll~~IL~rLp~~~l~r~r~Vck~Wr~li~~~~f   42 (368)
                      |++||+..||+.|++++|+++.+|||+|+.+++++.+
T Consensus        18 l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~l   54 (118)
T d1p22a1          18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGML   54 (118)
T ss_dssp             TCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTH
T ss_pred             ChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHH
Confidence            4579999999999999999999999999999998876

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.00  E-value=4.1e-05  Score=68.91  Aligned_cols=196  Identities=10%  Similarity=-0.020  Sum_probs=109.7

Q ss_pred             cccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeC---------CCcEEEEEeCCCCCceeccccCCCCCce
Q 043460          122 NPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRAR---------MDPEVDIFSSENKTWITRKVSVKPRRPV  192 (368)
Q Consensus       122 NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~---------~~~~~~vyss~~~~W~~~~~~~~~~~p~  192 (368)
                      .|.+++|...++.|...    ...+..+   .+-||+.+....         ....+++|+..+++|+....+..+.  .
T Consensus         5 ~p~~g~W~~~~~~p~~~----~~~a~~~---~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~--~   75 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIVP----AAAAIEP---TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH--D   75 (387)
T ss_dssp             CTTSCEEEEEEECSSCC----SEEEEET---TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC--C
T ss_pred             CCCCCccCCcCCCCccc----cEEEEEe---eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCc--c
Confidence            48899999877666322    2223333   234777776542         2235889999999998765433222  1


Q ss_pred             eeeccceEEEeCCeEEEEEe--CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECC----CeEEEEE
Q 043460          193 SFYVLQSVYSRGGILYNLTY--RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQ----STLLIWQ  266 (368)
Q Consensus       193 ~~~~~~~v~~~~G~lywl~~--~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~----~~~~IW~  266 (368)
                      .......+.. +|.+|+..+  ...+..||+.+.+|+..-.+|.....   .......+|+++++....    ..-.++.
T Consensus        76 ~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~---~~~~~~~dG~v~v~GG~~~~~~~~~~v~~  151 (387)
T d1k3ia3          76 MFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY---QSSATMSDGRVFTIGGSWSGGVFEKNGEV  151 (387)
T ss_dssp             CSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS---CEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred             cceeEEEEec-CCcEEEeecCCCcceeEecCccCcccccccccccccc---cceeeecCCceeeeccccccccccceeee
Confidence            1112224556 899999876  46789999999999933334433221   233344589998887621    1123444


Q ss_pred             EccCCCCCCCCCCccCCCCCCceEEEEEeeecccccc-Ccc--ccceEEEEE-ecCCCEEEEe-eCCeEEEEECCCCeEE
Q 043460          267 LDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNK-LHV--FGLTRFYNI-HPNSDIIFLG-SCDMIYRYHLKTNKME  341 (368)
Q Consensus       267 l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~-~~~--~~~~~~~~~-~~~~~~v~~~-~~~~~~~ydl~t~~~~  341 (368)
                      .+-..+               +|+.+..+........ ...  ...-.+..+ ..++.++... .......||..+..|+
T Consensus       152 yd~~~~---------------~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  216 (387)
T d1k3ia3         152 YSPSSK---------------TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  216 (387)
T ss_dssp             EETTTT---------------EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             ecCCCC---------------ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence            444445               8988765542211110 000  000111122 2344433333 3457888999999988


Q ss_pred             Eecc
Q 043460          342 LFST  345 (368)
Q Consensus       342 ~v~~  345 (368)
                      ....
T Consensus       217 ~~~~  220 (387)
T d1k3ia3         217 SAGK  220 (387)
T ss_dssp             EEEE
T ss_pred             eccc
Confidence            7653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.65  E-value=0.00044  Score=61.87  Aligned_cols=121  Identities=14%  Similarity=0.105  Sum_probs=77.1

Q ss_pred             EEecCCcEEEEeecC----------CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcE
Q 043460           99 LIDCCNGLILLGSSL----------SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPE  168 (368)
Q Consensus        99 ~~~s~~Glll~~~~~----------~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~  168 (368)
                      .+...+|-|++....          ......+|||.|++|..+|+++........+....+    +-+|+.+... ....
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~----~g~i~v~Gg~-~~~~   99 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG----NGQIVVTGGN-DAKK   99 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT----TSCEEEECSS-STTC
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec----CCcEEEeecC-CCcc
Confidence            344556666664331          112467999999999998776543322223334333    2355554433 3467


Q ss_pred             EEEEeCCCCCceeccccCCCCCceeeeccceEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEE
Q 043460          169 VDIFSSENKTWITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-------RSTILRYNIEALSEAEII  230 (368)
Q Consensus       169 ~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~  230 (368)
                      +++|++.+++|+....+..++    +....++.. ||.+|.+.+       ...+..||+.+.+|. .+
T Consensus       100 ~~~yd~~~~~w~~~~~~~~~r----~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~-~~  162 (387)
T d1k3ia3         100 TSLYDSSSDSWIPGPDMQVAR----GYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SL  162 (387)
T ss_dssp             EEEEEGGGTEEEECCCCSSCC----SSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEE-EE
T ss_pred             eeEecCccCcccccccccccc----cccceeeec-CCceeeeccccccccccceeeeecCCCCcee-ec
Confidence            899999999999877543321    122234455 899999886       246899999999999 54

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.03  E-value=3.6  Score=34.06  Aligned_cols=200  Identities=11%  Similarity=0.019  Sum_probs=104.6

Q ss_pred             cCCcEEEEeecCCCeeEEEEcccCcccee---cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCC
Q 043460          102 CCNGLILLGSSLSKHRYYVCNPLTKQCVA---IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKT  178 (368)
Q Consensus       102 s~~Glll~~~~~~~~~~~v~NP~T~~~~~---lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~  178 (368)
                      +-+|-+++... ....+.|||..+++...   ++...    .....+.+.|.  +.+-+.  ........+.|++.+++.
T Consensus        67 sp~g~~latg~-~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~v~~s~d--~~~l~~--~~~~~~~~~~v~~~~~~~  137 (311)
T d1nr0a1          67 SPSGYYCASGD-VHGNVRIWDTTQTTHILKTTIPVFS----GPVKDISWDSE--SKRIAA--VGEGRERFGHVFLFDTGT  137 (311)
T ss_dssp             CTTSSEEEEEE-TTSEEEEEESSSTTCCEEEEEECSS----SCEEEEEECTT--SCEEEE--EECCSSCSEEEEETTTCC
T ss_pred             eCCCCeEeccc-cCceEeeeeeecccccccccccccc----Ccccccccccc--cccccc--cccccccccccccccccc
Confidence            44666655543 56788999988876432   22211    12345666662  333222  222123457788877664


Q ss_pred             ceeccccCCCCCceeeeccceEEEe-CCeEEEE-Ee-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEE
Q 043460          179 WITRKVSVKPRRPVSFYVLQSVYSR-GGILYNL-TY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNY  254 (368)
Q Consensus       179 W~~~~~~~~~~~p~~~~~~~~v~~~-~G~lywl-~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~  254 (368)
                      -...-.....  +.     .++.+. +|....+ +. ++.|..||..+.+.. ........  .  -..+.. .+|.+.+
T Consensus       138 ~~~~l~~h~~--~v-----~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~-~~~~~~~~--~--i~~v~~~p~~~~l~  205 (311)
T d1nr0a1         138 SNGNLTGQAR--AM-----NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-STFGEHTK--F--VHSVRYNPDGSLFA  205 (311)
T ss_dssp             BCBCCCCCSS--CE-----EEEEECSSSSCEEEEEETTSCEEEEETTTBEEE-EEECCCSS--C--EEEEEECTTSSEEE
T ss_pred             cccccccccc--cc-----ccccccccceeeecccccccccccccccccccc-cccccccc--c--ccccccCccccccc
Confidence            3221100000  00     123221 3443233 33 577899999988766 33222111  0  112332 3778777


Q ss_pred             EEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEEE
Q 043460          255 ASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYRY  333 (368)
Q Consensus       255 ~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~y  333 (368)
                      ....+..+.+|-+...                   .+...+......... ....+.-+.+.+++..++.. .++.+..+
T Consensus       206 ~~~~d~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~-h~~~V~~~~~s~~~~~l~tgs~Dg~v~iw  265 (311)
T d1nr0a1         206 STGGDGTIVLYNGVDG-------------------TKTGVFEDDSLKNVA-HSGSVFGLTWSPDGTKIASASADKTIKIW  265 (311)
T ss_dssp             EEETTSCEEEEETTTC-------------------CEEEECBCTTSSSCS-SSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cccccccccccccccc-------------------ccccccccccccccc-ccccccccccCCCCCEEEEEeCCCeEEEE
Confidence            7778889999987653                   233333322111100 00234446677888877666 45679999


Q ss_pred             ECCCCeEEE
Q 043460          334 HLKTNKMEL  342 (368)
Q Consensus       334 dl~t~~~~~  342 (368)
                      |+++++..+
T Consensus       266 d~~t~~~~~  274 (311)
T d1nr0a1         266 NVATLKVEK  274 (311)
T ss_dssp             ETTTTEEEE
T ss_pred             ECCCCcEEE
Confidence            999998654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.28  E-value=2.5  Score=35.17  Aligned_cols=31  Identities=6%  Similarity=0.170  Sum_probs=27.2

Q ss_pred             CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCC
Q 043460          204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDK  235 (368)
Q Consensus       204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~  235 (368)
                      +|.|||..- ...|.++|+.+++.+ ..++|..
T Consensus        29 ~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~   60 (295)
T d2ghsa1          29 SGTAWWFNILERELHELHLASGRKT-VHALPFM   60 (295)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEE-EEECSSC
T ss_pred             CCEEEEEECCCCEEEEEECCCCeEE-EEECCCC
Confidence            789999875 788999999999999 8888864

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.59  E-value=4.8  Score=33.26  Aligned_cols=206  Identities=11%  Similarity=-0.019  Sum_probs=96.3

Q ss_pred             EecCCcEEEEeecCCCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCc
Q 043460          100 IDCCNGLILLGSSLSKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTW  179 (368)
Q Consensus       100 ~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W  179 (368)
                      -+..+|-|...+. ...+++-+||.|++....+.+.     ...+++.++   +.--+++ .    ...+..|++.+++.
T Consensus        25 wd~~~~~l~wvDi-~~~~I~r~d~~~g~~~~~~~~~-----~~~~i~~~~---dg~l~va-~----~~gl~~~d~~tg~~   90 (295)
T d2ghsa1          25 FDPASGTAWWFNI-LERELHELHLASGRKTVHALPF-----MGSALAKIS---DSKQLIA-S----DDGLFLRDTATGVL   90 (295)
T ss_dssp             EETTTTEEEEEEG-GGTEEEEEETTTTEEEEEECSS-----CEEEEEEEE---TTEEEEE-E----TTEEEEEETTTCCE
T ss_pred             EECCCCEEEEEEC-CCCEEEEEECCCCeEEEEECCC-----CcEEEEEec---CCCEEEE-E----eCccEEeeccccee
Confidence            3455665555443 4567889999999877654322     112455444   1222222 2    34688999999998


Q ss_pred             eeccccCCCCCceeeeccceEEEeCCeEEEEEe-----CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCC-eEE
Q 043460          180 ITRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-----RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKG-ALN  253 (368)
Q Consensus       180 ~~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-----~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G-~L~  253 (368)
                      +..... ....+.. .....+.-.+|.+|+-..     ...-..|.....+.. .+..+....    +......++ .|+
T Consensus        91 ~~l~~~-~~~~~~~-~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~-~~~~~~~~~----Ng~~~s~d~~~l~  163 (295)
T d2ghsa1          91 TLHAEL-ESDLPGN-RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT-KLFADISIP----NSICFSPDGTTGY  163 (295)
T ss_dssp             EEEECS-STTCTTE-EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE-EEEEEESSE----EEEEECTTSCEEE
T ss_pred             eEEeee-ecCCCcc-cceeeEECCCCCEEEEeccccccccceeEeeecCCcEE-EEeeccCCc----ceeeecCCCceEE
Confidence            876532 1111111 112223332777766443     112222333344554 322111111    112222344 455


Q ss_pred             EEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-eCCeEEE
Q 043460          254 YASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-SCDMIYR  332 (368)
Q Consensus       254 ~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~  332 (368)
                      ++......+..+.++.....         ..+  .......+.  ...      ....=+.+..+|++.+-. ...+|.+
T Consensus       164 ~~dt~~~~I~~~~~d~~~~~---------~~~--~~~~~~~~~--~~~------g~pdG~~vD~~GnlWva~~~~g~V~~  224 (295)
T d2ghsa1         164 FVDTKVNRLMRVPLDARTGL---------PTG--KAEVFIDST--GIK------GGMDGSVCDAEGHIWNARWGEGAVDR  224 (295)
T ss_dssp             EEETTTCEEEEEEBCTTTCC---------BSS--CCEEEEECT--TSS------SEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred             EeecccceeeEeeecccccc---------ccc--ceEEEeccC--ccc------ccccceEEcCCCCEEeeeeCCCceEE
Confidence            55555445444444432210         000  111111111  111      111223455566644333 5678999


Q ss_pred             EECCCCeEEEecc
Q 043460          333 YHLKTNKMELFST  345 (368)
Q Consensus       333 ydl~t~~~~~v~~  345 (368)
                      ||++.+.++++.-
T Consensus       225 ~dp~G~~~~~i~l  237 (295)
T d2ghsa1         225 YDTDGNHIARYEV  237 (295)
T ss_dssp             ECTTCCEEEEEEC
T ss_pred             ecCCCcEeeEecC
Confidence            9999888888765

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=88.33  E-value=3.6  Score=33.94  Aligned_cols=109  Identities=8%  Similarity=0.013  Sum_probs=67.0

Q ss_pred             CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCCCCCccC
Q 043460          204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNSHGSNKA  282 (368)
Q Consensus       204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~  282 (368)
                      +|.||+... ...|.++|+..+.-. ....|....     ......+|+|+++......+.+|.+.....          
T Consensus        38 dG~l~vt~~~~~~I~~i~p~g~~~~-~~~~~~~~~-----gla~~~dG~l~v~~~~~~~~~~~~~~~~~~----------  101 (302)
T d2p4oa1          38 DGTIFVTNHEVGEIVSITPDGNQQI-HATVEGKVS-----GLAFTSNGDLVATGWNADSIPVVSLVKSDG----------  101 (302)
T ss_dssp             TSCEEEEETTTTEEEEECTTCCEEE-EEECSSEEE-----EEEECTTSCEEEEEECTTSCEEEEEECTTS----------
T ss_pred             CCCEEEEeCCCCEEEEEeCCCCEEE-EEcCCCCcc-----eEEEcCCCCeEEEecCCceEEEEEeccccc----------
Confidence            899987665 678999999877555 666664321     122344899988888777776666655433          


Q ss_pred             CCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEEEEECCCCeEEEe
Q 043460          283 ASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIYRYHLKTNKMELF  343 (368)
Q Consensus       283 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~ydl~t~~~~~v  343 (368)
                           .-..+......         ....-+.+.+++. +|+.  ....++.+|++++..+..
T Consensus       102 -----~~~~~~~~~~~---------~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~  149 (302)
T d2p4oa1         102 -----TVETLLTLPDA---------IFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIW  149 (302)
T ss_dssp             -----CEEEEEECTTC---------SCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             -----ceeeccccCCc---------cccceeEEccCCC-EEeeccccccceeeeccCCcceeE
Confidence                 23333332211         1122244555554 4554  567899999999886654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.98  E-value=8  Score=30.87  Aligned_cols=140  Identities=11%  Similarity=0.077  Sum_probs=68.5

Q ss_pred             CCeeEEEEcccCccceecCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCcee
Q 043460          114 SKHRYYVCNPLTKQCVAIPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVS  193 (368)
Q Consensus       114 ~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~  193 (368)
                      ....+.+||..+++...+....  .......+.+.|.  +.+- + ...  ....+.+|+..++...........+  ..
T Consensus       156 ~dg~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~--~~~l-~-~~~--~d~~i~~~~~~~~~~~~~~~~~~~h--~~  225 (299)
T d1nr0a2         156 QDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNN--GAFL-V-ATD--QSRKVIPYSVANNFELAHTNSWTFH--TA  225 (299)
T ss_dssp             TTSEEEEEEEETTEEEEEEEEE--CSSCEEEEEECTT--SSEE-E-EEE--TTSCEEEEEGGGTTEESCCCCCCCC--SS
T ss_pred             cccccccccccccccccccccc--ccccccccccccc--cccc-c-ccc--ccccccccccccccccccccccccc--cc
Confidence            4556778887766654432211  1112334566652  3332 2 222  2446788888776544332111110  00


Q ss_pred             eeccceEEE-eCCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEE
Q 043460          194 FYVLQSVYS-RGGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQL  267 (368)
Q Consensus       194 ~~~~~~v~~-~~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l  267 (368)
                        .-.++.+ .+|.....+. ++.|..+|+.+.+....+.........  ...+...+|...+....+..++||-+
T Consensus       226 --~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         226 --KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS--VNSVIWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             --CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSC--EEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             --ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCc--EEEEEECCCCEEEEEeCCCEEEEEec
Confidence              0012222 1454444443 678999999887654233222211111  12333455665556667889999976

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.34  E-value=13  Score=30.67  Aligned_cols=203  Identities=10%  Similarity=0.048  Sum_probs=102.1

Q ss_pred             CcEEEEeecCCCeeEEEEcccCccceecC-CCCcCCCCCCCeeEEcCCCCCCeEEEEEEEe--CCCcEEEEEeCCCCCce
Q 043460          104 NGLILLGSSLSKHRYYVCNPLTKQCVAIP-KAREDVLASPPALAFHPCDSSHYKIIRFLRA--RMDPEVDIFSSENKTWI  180 (368)
Q Consensus       104 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP-~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~--~~~~~~~vyss~~~~W~  180 (368)
                      +|-|.+.+. ...+++.+||.+++..... +...    ...++.+++.  +.  ++.+...  .....+..++..++...
T Consensus        50 ~G~Ly~~D~-~~g~I~ri~p~g~~~~~~~~~~~~----~p~gla~~~d--G~--l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          50 QGQLFLLDV-FEGNIFKINPETKEIKRPFVSHKA----NPAAIKIHKD--GR--LFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             TSCEEEEET-TTCEEEEECTTTCCEEEEEECSSS----SEEEEEECTT--SC--EEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CCCEEEEEC-CCCEEEEEECCCCeEEEEEeCCCC----CeeEEEECCC--CC--EEEEecCCCccceeEEEEcCCCceee
Confidence            454444443 5567888999988655432 1111    2347777762  23  2222211  12334556666666554


Q ss_pred             eccccCCCCCceeeeccceEEEeCCeEEEEEe-------CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCC-e
Q 043460          181 TRKVSVKPRRPVSFYVLQSVYSRGGILYNLTY-------RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKG-A  251 (368)
Q Consensus       181 ~~~~~~~~~~p~~~~~~~~v~~~~G~lywl~~-------~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G-~  251 (368)
                      ........   ....+.-.+-- +|.+|+-..       .+.+..+|+.....+ .+.-+...     .--++. .+| .
T Consensus       121 ~~~~~~~~---~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~-~~~~~~~~-----pnGia~s~dg~~  190 (319)
T d2dg1a1         121 DIIEDLST---AYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISV-----ANGIALSTDEKV  190 (319)
T ss_dssp             EEECSSSS---CCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESS-----EEEEEECTTSSE
T ss_pred             eeccCCCc---ccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeE-EEeeccce-----eeeeeeccccce
Confidence            43311111   11111112333 788877643       346888888877666 33211111     112333 355 4


Q ss_pred             EEEEEECCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCe
Q 043460          252 LNYASRNQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDM  329 (368)
Q Consensus       252 L~~~~~~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~  329 (368)
                      |+++.....++..+.++....              ..+.....+... ....    ....=+++..+|+ ||+.  ...+
T Consensus       191 lyvad~~~~~I~~~d~~~~g~--------------~~~~~~~~~~~~-~~~~----~~PdGl~vD~~G~-l~Va~~~~g~  250 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGV--------------TIQPFGATIPYY-FTGH----EGPDSCCIDSDDN-LYVAMYGQGR  250 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSS--------------SEEEEEEEEEEE-CCSS----SEEEEEEEBTTCC-EEEEEETTTE
T ss_pred             EEEecccCCceEEEEEcCCCc--------------eeccccceeeec-cCCc----cceeeeeEcCCCC-EEEEEcCCCE
Confidence            777766666666666655422              023333332211 1100    0111245666776 5555  5779


Q ss_pred             EEEEECCCCeEEEecc
Q 043460          330 IYRYHLKTNKMELFST  345 (368)
Q Consensus       330 ~~~ydl~t~~~~~v~~  345 (368)
                      |.+||.+.+.++++.-
T Consensus       251 V~~~~p~G~~l~~i~~  266 (319)
T d2dg1a1         251 VLVFNKRGYPIGQILI  266 (319)
T ss_dssp             EEEECTTSCEEEEEEC
T ss_pred             EEEECCCCcEEEEEeC
Confidence            9999999888888764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.68  E-value=12  Score=30.79  Aligned_cols=62  Identities=24%  Similarity=0.183  Sum_probs=38.8

Q ss_pred             CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEE-eeCCeEEEEEEC--CCeEEEEEEccC
Q 043460          204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIG-LCKGALNYASRN--QSTLLIWQLDDH  270 (368)
Q Consensus       204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~-~~~G~L~~~~~~--~~~~~IW~l~~~  270 (368)
                      +|.|||... .+.|..+|+.++... ....+....    ...++ ..+|+|+++...  .....|..++..
T Consensus        50 ~G~Ly~~D~~~g~I~ri~p~g~~~~-~~~~~~~~~----p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          50 QGQLFLLDVFEGNIFKINPETKEIK-RPFVSHKAN----PAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN  115 (319)
T ss_dssp             TSCEEEEETTTCEEEEECTTTCCEE-EEEECSSSS----EEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred             CCCEEEEECCCCEEEEEECCCCeEE-EEEeCCCCC----eeEEEECCCCCEEEEecCCCccceeEEEEcCC
Confidence            689999764 678999999998766 443333221    11233 347888887753  234456666554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.65  E-value=11  Score=32.74  Aligned_cols=110  Identities=14%  Similarity=0.067  Sum_probs=61.6

Q ss_pred             CCeEEEEEe----CCeEEEEEcCC---CeEEEEEeCCCCCCCCCCceeEEeeCCeEEEEEECCCeEEEEEEccCCCCCCC
Q 043460          204 GGILYNLTY----RSTILRYNIEA---LSEAEIIEVPDKNNHPCDSEVIGLCKGALNYASRNQSTLLIWQLDDHRHHSNS  276 (368)
Q Consensus       204 ~G~lywl~~----~~~il~fD~~~---~~~~~~~~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~~IW~l~~~~~~~~~  276 (368)
                      ++.+|.++.    ...|++.|+.+   ..|+.+++- .+....  ...+...++.|.+...++..-+|.+++-.++    
T Consensus       297 ~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~-~~~~~~--~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~----  369 (430)
T d1qfma1         297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE-HEKDVL--EWVACVRSNFLVLCYLHDVKNTLQLHDLATG----  369 (430)
T ss_dssp             TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECC-CSSCEE--EEEEEETTTEEEEEEEETTEEEEEEEETTTC----
T ss_pred             CceeecccCcccccceeEEecCCCCccccceEEecc-cCccee--eeEEEEECCEEEEEEEcCCEeEEEEEECCCC----
Confidence            677887776    57899998876   356633322 221110  1122233677777776655555555555444    


Q ss_pred             CCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe-----eCCeEEEEECCCCeEE
Q 043460          277 HGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG-----SCDMIYRYHLKTNKME  341 (368)
Q Consensus       277 ~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~ydl~t~~~~  341 (368)
                                 .|..+.   +....       .+..+....+++.+++.     ....++.||++|++.+
T Consensus       370 -----------~~~~~~---~~~~~-------sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         370 -----------ALLKIF---PLEVG-------SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE  418 (430)
T ss_dssp             -----------CEEEEE---CCCSS-------EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred             -----------cEEEec---CCCCc-------eEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence                       676542   11111       12222223456666765     5678999999998764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=80.52  E-value=17  Score=31.40  Aligned_cols=202  Identities=9%  Similarity=-0.015  Sum_probs=107.8

Q ss_pred             cEEEEeecCCCeeEEEEcccCcccee-cCCCCcCCCCCCCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceecc
Q 043460          105 GLILLGSSLSKHRYYVCNPLTKQCVA-IPKAREDVLASPPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRK  183 (368)
Q Consensus       105 Glll~~~~~~~~~~~v~NP~T~~~~~-lP~~~~~~~~~~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~  183 (368)
                      .++++... ...++.|||+.|++... ++-.     ....++.|.|.  ++|-.+.  .  ..-.+.+++..++.-....
T Consensus        32 ~~~~v~~~-d~g~v~v~D~~t~~v~~~~~~g-----~~~~~v~fSpD--G~~l~~~--s--~dg~v~~~d~~t~~~~~~~   99 (432)
T d1qksa2          32 NLFSVTLR-DAGQIALIDGSTYEIKTVLDTG-----YAVHISRLSAS--GRYLFVI--G--RDGKVNMIDLWMKEPTTVA   99 (432)
T ss_dssp             GEEEEEET-TTTEEEEEETTTCCEEEEEECS-----SCEEEEEECTT--SCEEEEE--E--TTSEEEEEETTSSSCCEEE
T ss_pred             cEEEEEEc-CCCEEEEEECCCCcEEEEEeCC-----CCeeEEEECCC--CCEEEEE--c--CCCCEEEEEeeCCCceEEE
Confidence            45444443 67789999999998776 3422     13456778772  4444332  2  2357889998887654332


Q ss_pred             ccCCCCCceeeeccceEEEeCCe-EEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCC------CCCceeE-EeeCCeEEE
Q 043460          184 VSVKPRRPVSFYVLQSVYSRGGI-LYNLTY-RSTILRYNIEALSEAEIIEVPDKNNH------PCDSEVI-GLCKGALNY  254 (368)
Q Consensus       184 ~~~~~~~p~~~~~~~~v~~~~G~-lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~------~~~~~~l-~~~~G~L~~  254 (368)
                      .......|..........- +|. +|.-.. +..+..+|..+.+....+..+.....      ......+ ...+|...+
T Consensus       100 ~i~~~~~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~  178 (432)
T d1qksa2         100 EIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI  178 (432)
T ss_dssp             EEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred             EEecCCCCCCeEEecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEE
Confidence            1111111122111111122 565 455444 78899999999877624443221110      0011122 233565555


Q ss_pred             EEE-CCCeEEEEEEccCCCCCCCCCCccCCCCCCceEEEEEeeeccccccCccccceEEEEEecCCCEEEEe--eCCeEE
Q 043460          255 ASR-NQSTLLIWQLDDHRHHSNSHGSNKAASGARSWILKHSICMDEWGNKLHVFGLTRFYNIHPNSDIIFLG--SCDMIY  331 (368)
Q Consensus       255 ~~~-~~~~~~IW~l~~~~~~~~~~~~~~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~  331 (368)
                      +.. +...+.+|....  .               .-.++.+|+...         ...-+++.+++..++..  ....+.
T Consensus       179 vs~~~~~~i~~~d~~~--~---------------~~~~~~~i~~g~---------~~~~~~~spdg~~~~va~~~~~~v~  232 (432)
T d1qksa2         179 VNVKETGKILLVDYTD--L---------------NNLKTTEISAER---------FLHDGGLDGSHRYFITAANARNKLV  232 (432)
T ss_dssp             EEETTTTEEEEEETTC--S---------------SEEEEEEEECCS---------SEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred             EEEccCCeEEEEEccC--C---------------CcceEEEEcccC---------ccccceECCCCCEEEEeccccceEE
Confidence            554 445555554433  2               222334444221         12345788888877666  567899


Q ss_pred             EEECCCCeEEEecc
Q 043460          332 RYHLKTNKMELFST  345 (368)
Q Consensus       332 ~ydl~t~~~~~v~~  345 (368)
                      ..|.++++......
T Consensus       233 v~d~~~~~~~~~~~  246 (432)
T d1qksa2         233 VIDTKEGKLVAIED  246 (432)
T ss_dssp             EEETTTTEEEEEEE
T ss_pred             EeecccceEEEEec
Confidence            99999988765543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.49  E-value=13  Score=29.98  Aligned_cols=113  Identities=12%  Similarity=-0.032  Sum_probs=60.4

Q ss_pred             CCeeEEcCCCCCCeEEEEEEEeCCCcEEEEEeCCCCCceeccccCCCCCceeeeccceEE-EeCCeEEEEEe-CCeEEEE
Q 043460          142 PPALAFHPCDSSHYKIIRFLRARMDPEVDIFSSENKTWITRKVSVKPRRPVSFYVLQSVY-SRGGILYNLTY-RSTILRY  219 (368)
Q Consensus       142 ~~~l~~d~~~~~~ykvv~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~p~~~~~~~~v~-~~~G~lywl~~-~~~il~f  219 (368)
                      ..++.||..   +=+|+....  ....+...+...+.-+.....   .  .....+-++- + +|.|||... ...|.++
T Consensus        38 ~~~ld~D~~---~~~iywsd~--~~~~I~~~~l~g~~~~~v~~~---~--~~~p~~iAvD~~-~~~lY~~d~~~~~I~~~  106 (263)
T d1npea_          38 IIGLAFDCV---DKVVYWTDI--SEPSIGRASLHGGEPTTIIRQ---D--LGSPEGIALDHL-GRTIFWTDSQLDRIEVA  106 (263)
T ss_dssp             EEEEEEETT---TTEEEEEET--TTTEEEEEESSSCCCEEEECT---T--CCCEEEEEEETT-TTEEEEEETTTTEEEEE
T ss_pred             EEEEEEEeC---CCEEEEEEC--CCCeEEEEEcccCCcEEEEEe---c--cccccEEEEecc-CCeEEEeccCCCEEEEE
Confidence            456778863   233443322  344566666655443333210   0  1111111332 4 789999876 6799999


Q ss_pred             EcCCCeEEEEEeCCCCCCCCCCceeEEe--eCCeEEEEEECCCeEEEEEEccC
Q 043460          220 NIEALSEAEIIEVPDKNNHPCDSEVIGL--CKGALNYASRNQSTLLIWQLDDH  270 (368)
Q Consensus       220 D~~~~~~~~~~~lP~~~~~~~~~~~l~~--~~G~L~~~~~~~~~~~IW~l~~~  270 (368)
                      ++..+.-. .+.-. ....   ...++.  ..|.|+..........|+...-+
T Consensus       107 ~~dg~~~~-~l~~~-~l~~---p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d  154 (263)
T d1npea_         107 KMDGTQRR-VLFDT-GLVN---PRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (263)
T ss_dssp             ETTSCSCE-EEECS-SCSS---EEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             ecCCceEE-EEecc-cccC---CcEEEEecccCcEEEeecCCCCcEEEEecCC
Confidence            99877655 43211 1111   223443  46788877765555667776654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=80.17  E-value=9.3  Score=30.85  Aligned_cols=62  Identities=13%  Similarity=0.086  Sum_probs=40.5

Q ss_pred             CCeEEEEEe-CCeEEEEEcCCCeEEEEEeCCCCCCCCCCceeEEe-eCCeEEEEEE-CCCeEEEEEEcc
Q 043460          204 GGILYNLTY-RSTILRYNIEALSEAEIIEVPDKNNHPCDSEVIGL-CKGALNYASR-NQSTLLIWQLDD  269 (368)
Q Consensus       204 ~G~lywl~~-~~~il~fD~~~~~~~~~~~lP~~~~~~~~~~~l~~-~~G~L~~~~~-~~~~~~IW~l~~  269 (368)
                      +|....... ++.|.++|+.+.+....+++|.....    ..++. .||+..++.. .+..+.+|-++.
T Consensus         7 ~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p----~~l~~spDG~~l~v~~~~~~~v~~~d~~t   71 (346)
T d1jmxb_           7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGP----GTAMMAPDNRTAYVLNNHYGDIYGIDLDT   71 (346)
T ss_dssp             TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSS----CEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCc----ceEEECCCCCEEEEEECCCCcEEEEeCcc
Confidence            444433333 78999999999988647788865322    13444 4777655554 567888887765