Citrus Sinensis ID: 043484

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
RAKELKGFDDTKVGVKGLVDAGVVNIPRIFIQPSEELAQELITHWSNLQVLVVDLGGIRHNKLEDIVDQFYTRYPTRSIKFNCNFDLYFSRIASWRDMLGIYNFDINSLDPNQLPEVCRYKLYPYTTMAHMKEVRKLGETLFGILSVALGLEPEYLKGMGCSNGYDFVYNYYPHCPQPKLTLGAQGNSDPSFLTILLQDQIRGLQVLSNDKLKSVDHRVVANKHASPRVSVACFFAGHATTVSPLP
ccccccccccccccHHHHHHccccccccccccccccHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHcccccccEEEccccccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccEEccccccccccccccccccccccccEEEEccccccEEEEEcccccccccEEEccccccccEEEEEccccccccccccc
cHHHHHccccccHcHHHHHHcccccccHHcccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHcccHHHcEEEcccccccccccccHHHHEEEEccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEEEEEEEEEcccccEEEEEEEEccccccccccc
rakelkgfddtkvgVKGLVDagvvniprifiqPSEELAQELITHWSNLQVLVVDlggirhnklEDIVDQFytryptrsikfncnfdLYFSRIASWRDMLGIYnfdinsldpnqlpevcryklypyttMAHMKEVRKLGETLFGILSVAlglepeylkgmgcsngydfvynyyphcpqpkltlgaqgnsdpSFLTILLQDQIRGLqvlsndklksvdhrvvankhasprvSVACffaghattvsplp
rakelkgfddtkvgvkglvdagvvnIPRIFIQPSEELAQELITHWSNLQVLVVDLGGIRHNKLEDIVDQFYTRYPTRSIKFNCNFDLYFSRIASWRDMLGIYNFDinsldpnqlpeVCRYKLYPYTTMAHMKEVRKLGETLFGILSVALGLEPEYLKGMGCSNGYDFVYNYYPHCPQPKLTLGAQGNSDPSFLTILLQDQIRGLQVLSNDKLKSVDHRVVANKHASPRVSVACFFAGHATTVSPLP
RAKELKGFDDTKVGVKGLVDAGVVNIPRIFIQPSEELAQELITHWSNLQVLVVDLGGIRHNKLEDIVDQFYTRYPTRSIKFNCNFDLYFSRIASWRDMLGIYNFDINSLDPNQLPEVCRYKLYPYTTMAHMKEVRKLGETLFGILSVALGLEPEYLKGMGCSNGYDFVYNYYPHCPQPKLTLGAQGNSDPSFLTILLQDQIRGLQVLSNDKLKSVDHRVVANKHASPRVSVACFFAGHATTVSPLP
*********DTKVGVKGLVDAGVVNIPRIFIQPSEELAQELITHWSNLQVLVVDLGGIRHNKLEDIVDQFYTRYPTRSIKFNCNFDLYFSRIASWRDMLGIYNFDINSLDPNQLPEVCRYKLYPYTTMAHMKEVRKLGETLFGILSVALGLEPEYLKGMGCSNGYDFVYNYYPHCPQPKLTLGAQGNSDPSFLTILLQDQIRGLQVLSNDKLKSVDHRVVANKHASPRVSVACFFAGHA*******
***ELKGFDDTKVGVKGLVDAGVVNIPRIFIQPSEELAQELITHWSNLQVLVVDLGGIRHNKLEDIVDQFYTRYPTRSIKFNCNFDLYFSRIASWRDMLGIYNFDINSLDPNQLPEVCRYKLYPYTTMAHMKEVRKLGETLFGILSVALGLEPEYLKGMGCSNGYDFVYNYYPHCPQPKLTLGAQGNSDPSFLTILLQDQIRGLQVLSNDKLKSVDHRVVANKHASPRVSVACFFAGHATTVSPLP
RAKELKGFDDTKVGVKGLVDAGVVNIPRIFIQPSEELAQELITHWSNLQVLVVDLGGIRHNKLEDIVDQFYTRYPTRSIKFNCNFDLYFSRIASWRDMLGIYNFDINSLDPNQLPEVCRYKLYPYTTMAHMKEVRKLGETLFGILSVALGLEPEYLKGMGCSNGYDFVYNYYPHCPQPKLTLGAQGNSDPSFLTILLQDQIRGLQVLSNDKLKSVDHRVVANKHASPRVSVACFFAGHATTVSPLP
*****KGFDDTKVGVKGLVDAGVVNIPRIFIQPSEELAQELITHWSNLQVLVVDLGGIRHNKLEDIVDQFYTRYPTRSIKFNCNFDLYFSRIASWRDMLGIYNFDINSLDPNQLPEVCRYKLYPYTTMAHMKEVRKLGETLFGILSVALGLEPEYLKGMGCSNGYDFVYNYYPHCPQPKLTLGAQGNSDPSFLTILLQDQIRGLQVLSNDKLKSVDHRVVANKHASPRVSVACFFAGHATTV****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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RAKELKGFDDTKVGVKGLVDAGVVNIPRIFIQPSEELAQELITHWSNLQVLVVDLGGIRHNKLEDIVDQFYTRYPTRSIKFNCNFDLYFSRIASWRDMLGIYNFDINSLDPNQLPEVCRYKLYPYTTMAHMKEVRKLGETLFGILSVALGLEPEYLKGMGCSNGYDFVYNYYPHCPQPKLTLGAQGNSDPSFLTILLQDQIRGLQVLSNDKLKSVDHRVVANKHASPRVSVACFFAGHATTVSPLP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query246 2.2.26 [Sep-21-2011]
Q8H1S4369 1-aminocyclopropane-1-car yes no 0.963 0.642 0.364 1e-44
Q84MB3365 1-aminocyclopropane-1-car no no 0.939 0.632 0.375 2e-43
Q9SKK4359 Probable 2-oxoacid depend no no 0.959 0.657 0.366 7e-42
Q9C5K7369 1-aminocyclopropane-1-car no no 0.963 0.642 0.358 2e-41
P93824360 1-aminocyclopropane-1-car no no 0.922 0.630 0.356 2e-41
O04847401 Deacetoxyvindoline 4-hydr N/A no 0.947 0.581 0.359 2e-38
Q94A78351 1-aminocyclopropane-1-car no no 0.922 0.646 0.343 2e-37
Q43383398 1-aminocyclopropane-1-car no no 0.922 0.570 0.329 1e-36
Q9LSW7365 1-aminocyclopropane-1-car no no 0.934 0.630 0.350 1e-36
Q9LSW6362 1-aminocyclopropane-1-car no no 0.934 0.635 0.350 1e-35
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1 Back     alignment and function desciption
 Score =  180 bits (456), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/321 (36%), Positives = 159/321 (49%), Gaps = 84/321 (26%)

Query: 1   RAKELKGFDDTKVGVKGLVDAGVVNIPRIFIQPS-------------------------- 34
           RA ELK FD+TK GVKGLVD+GV  +PRIF  P+                          
Sbjct: 12  RASELKAFDETKTGVKGLVDSGVSQVPRIFHHPTVKLSTPKPLPSDLLHLKTIPTIDLGG 71

Query: 35  -------------EELAQ--------ELITHWSNLQVLVVDLGGIR--HNKLEDIVDQFY 71
                        EE+ +        ++I H  +L++L     G+R  H + +++  +FY
Sbjct: 72  RDFQDAIKRNNAIEEIKEAAAKWGFFQVINHGVSLELLEKMKKGVRDFHEQSQEVRKEFY 131

Query: 72  TRYPTRSIKFNCNFDLYFSRIASWRDMLGIYNFDINSLDPNQLPEVCRYKLYPYTTMAHM 131
           +R  +R   +  NFDL+ S  A+WRD         ++  P  LPE+CR  +  Y+     
Sbjct: 132 SRDFSRRFLYLSNFDLFSSPAANWRDTFSC-TMAPDTPKPQDLPEICRDIMMEYS----- 185

Query: 132 KEVRKLGETLFGILSVALGLEPEYLKGMGCSNGYDFVYNYYPHCPQPKLTLGAQGNSDPS 191
           K+V  LG+ LF +LS ALGLEP +L  M CS G   + +YYP CP+P LTLG   +SD S
Sbjct: 186 KQVMNLGKFLFELLSEALGLEPNHLNDMDCSKGLLMLSHYYPPCPEPDLTLGTSQHSDNS 245

Query: 192 FLTILLQDQIRGLQV--------------------------LSNDKLKSVDHRVVANKHA 225
           FLT+LL DQI GLQV                          ++NDK  S++HRV+AN+  
Sbjct: 246 FLTVLLPDQIEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRAT 305

Query: 226 SPRVSVACFFAGHATTVSPLP 246
             RVSVACFF    T V P P
Sbjct: 306 RARVSVACFF---TTGVRPNP 323

Arabidopsis thaliana (taxid: 3702)
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKK4|GSL_ARATH Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1 Back     alignment and function description
>sp|Q9C5K7|ACCH2_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1 Back     alignment and function description
>sp|P93824|ACCH6_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 6 OS=Arabidopsis thaliana GN=At1g04350 PE=2 SV=1 Back     alignment and function description
>sp|O04847|DV4H_CATRO Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2 Back     alignment and function description
>sp|Q94A78|ACCH4_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g03400 PE=2 SV=1 Back     alignment and function description
>sp|Q43383|ACCH5_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2 Back     alignment and function description
>sp|Q9LSW7|ACCH9_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 9 OS=Arabidopsis thaliana GN=At5g43440 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW6|ACH10_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 10 OS=Arabidopsis thaliana GN=At5g43450 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
356559863 369 PREDICTED: 1-aminocyclopropane-1-carboxy 0.939 0.626 0.370 1e-49
356559859 374 PREDICTED: LOW QUALITY PROTEIN: 1-aminoc 0.939 0.617 0.364 1e-48
225433009 364 PREDICTED: 1-aminocyclopropane-1-carboxy 0.939 0.634 0.390 3e-46
449432576 393 PREDICTED: 1-aminocyclopropane-1-carboxy 0.967 0.605 0.363 8e-46
225437842 409 PREDICTED: 1-aminocyclopropane-1-carboxy 0.922 0.555 0.395 2e-45
225433017 365 PREDICTED: 1-aminocyclopropane-1-carboxy 0.934 0.630 0.386 3e-45
297744121 368 unnamed protein product [Vitis vinifera] 0.922 0.616 0.395 5e-45
296083608 372 unnamed protein product [Vitis vinifera] 0.930 0.615 0.399 7e-45
224111002 374 predicted protein [Populus trichocarpa] 0.939 0.617 0.369 1e-44
225433023 363 PREDICTED: 1-aminocyclopropane-1-carboxy 0.918 0.622 0.382 1e-44
>gi|356559863|ref|XP_003548216.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Glycine max] Back     alignment and taxonomy information
 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 166/310 (53%), Gaps = 79/310 (25%)

Query: 1   RAKELKGFDDTKVGVKGLVDAGVVNIPRIFIQPSEELAQ--------------------- 39
           R +ELK FD++K GVKGLVD+G+  +P+IF++P E+LA                      
Sbjct: 14  RLQELKAFDESKAGVKGLVDSGITKLPKIFVRPPEDLAAADPVSDNPAGAQFTIPVIDLD 73

Query: 40  -----------------------ELITHWSNLQVLVVDLGGIR--HNKLEDIVDQFYTRY 74
                                  +++ H   L+VL   +  +   H   +++  ++Y+R 
Sbjct: 74  GLTGERSGVVAGVRRAAETMGFFQVVNHGIPLKVLEETMAAVHEFHELPQELKAEYYSRE 133

Query: 75  PTRSIKFNCNFDLYFSRIASWRDMLGIYNFDINSLDPNQLPEVCRYKLYPYTTMAHMKEV 134
             + +K+  NFDLY S+ A+WRD L       + LDP +LP +CR        M + ++V
Sbjct: 134 QMKKVKYGSNFDLYQSKYANWRDTL-FCVMGPDPLDPQELPPICRD-----VAMEYSRQV 187

Query: 135 RKLGETLFGILSVALGLEPEYLKGMGCSNGYDFVYNYYPHCPQPKLTLGAQGNSDPSFLT 194
           + LG  LFG+LS ALGL+P++L+GM C+ G+  +++YYP CP+P+LT+G   +SDP FLT
Sbjct: 188 QLLGRVLFGLLSEALGLDPDHLEGMDCAKGHSILFHYYPSCPEPELTMGTTRHSDPDFLT 247

Query: 195 ILLQDQIRGLQVL--------------------------SNDKLKSVDHRVVANKHASPR 228
           ILLQD I GLQVL                          SNDK KSV+HRV+AN+   PR
Sbjct: 248 ILLQDHIGGLQVLGPYGWVDVPPVPGALVVNIGDLLQLISNDKFKSVEHRVLANR-IGPR 306

Query: 229 VSVACFFAGH 238
           VSVACFF  H
Sbjct: 307 VSVACFFTLH 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356559859|ref|XP_003548214.1| PREDICTED: LOW QUALITY PROTEIN: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225433009|ref|XP_002284582.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432576|ref|XP_004134075.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 3-like [Cucumis sativus] gi|449521172|ref|XP_004167604.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225437842|ref|XP_002263628.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433017|ref|XP_002284642.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] gi|147807864|emb|CAN66433.1| hypothetical protein VITISV_027452 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744121|emb|CBI37091.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083608|emb|CBI23597.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111002|ref|XP_002315711.1| predicted protein [Populus trichocarpa] gi|222864751|gb|EEF01882.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225433023|ref|XP_002284638.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
TAIR|locus:2052796362 AT2G30840 [Arabidopsis thalian 0.662 0.450 0.439 5.2e-52
TAIR|locus:2009175369 AT1G06650 [Arabidopsis thalian 0.699 0.466 0.405 2.8e-51
TAIR|locus:2009130365 AT1G06620 [Arabidopsis thalian 0.658 0.443 0.447 1.5e-50
TAIR|locus:2040045359 AT2G25450 [Arabidopsis thalian 0.654 0.448 0.421 1e-49
TAIR|locus:2824199366 AT1G06645 [Arabidopsis thalian 0.686 0.461 0.4 5.6e-49
TAIR|locus:2052781358 AT2G30830 [Arabidopsis thalian 0.654 0.449 0.409 1.1e-48
TAIR|locus:2020798398 2A6 [Arabidopsis thaliana (tax 0.654 0.404 0.406 3.5e-44
TAIR|locus:2148403364 AT5G59530 [Arabidopsis thalian 0.670 0.453 0.409 5.7e-44
TAIR|locus:2020818351 AT1G03400 [Arabidopsis thalian 0.646 0.452 0.420 7.9e-43
TAIR|locus:2148303366 AT5G59540 [Arabidopsis thalian 0.670 0.450 0.388 7.9e-43
TAIR|locus:2052796 AT2G30840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 334 (122.6 bits), Expect = 5.2e-52, Sum P(3) = 5.2e-52
 Identities = 76/173 (43%), Positives = 102/173 (58%)

Query:    40 ELITHWSNLQVLVVDLGGIR--HNKLEDIVDQFYTRYPTRSIKFNCNFDLYFSRIASWRD 97
             ++I H  +  V+     GIR  H +  D+  +FYTR  T+++K+N NFDLY S  A+WRD
Sbjct:    92 QVINHGISNDVMEKMKDGIRGFHEQDSDVRKKFYTRDVTKTVKYNSNFDLYSSPSANWRD 151

Query:    98 MLGIYNF-DINSLDPNQLPEVCRYKLYPYTTMAHMKEVRKLGETLFGILSVALGLEPEYL 156
              L  +   D+   +   LP++C   +  Y      K V KLGE +F +LS ALGL P +L
Sbjct:   152 TLSCFMAPDVPETE--DLPDICGEIMLEYA-----KRVMKLGELIFELLSEALGLNPNHL 204

Query:   157 KGMGCSNGYDFVYNYYPHCPQPKLTLGAQGNSDPSFLTILLQDQIRGLQVLSN 209
             K M C+ G   + +YYP CP+P LT G   +SD SFLTILLQD I GLQV  N
Sbjct:   205 KEMDCTKGLLMLSHYYPPCPEPGLTFGTSPHSDRSFLTILLQDHIGGLQVRQN 257
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0000041 "transition metal ion transport" evidence=RCA
GO:0009691 "cytokinin biosynthetic process" evidence=RCA
GO:0009815 "1-aminocyclopropane-1-carboxylate oxidase activity" evidence=ISS
TAIR|locus:2009175 AT1G06650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009130 AT1G06620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040045 AT2G25450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2824199 AT1G06645 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052781 AT2G30830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020798 2A6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148403 AT5G59530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020818 AT1G03400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148303 AT5G59540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020210001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (375 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 7e-27
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 3e-25
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-24
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-21
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 8e-20
PLN02947374 PLN02947, PLN02947, oxidoreductase 3e-17
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 4e-17
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 6e-17
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-16
PLN02704335 PLN02704, PLN02704, flavonol synthase 4e-16
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 6e-16
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 1e-13
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-12
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 2e-12
PLN02216357 PLN02216, PLN02216, protein SRG1 3e-12
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 4e-12
PLN02904357 PLN02904, PLN02904, oxidoreductase 1e-11
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-10
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 2e-10
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 2e-09
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 5e-09
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 2e-06
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-04
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  105 bits (264), Expect = 7e-27
 Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 31/193 (16%)

Query: 69  QFYTRYPTRSIKFNCNFDLYFSRIASWRDMLGIYNFDINSLDPNQLPEVCRYKLYPYTTM 128
           + Y+  PT++++ + +F++   ++ +WRD L ++ + ++   P        +K       
Sbjct: 97  KLYSDDPTKTMRLSTSFNVRKEKVHNWRDYLRLHCYPLDKYVPEWPSNPPSFK---EIVS 153

Query: 129 AHMKEVRKLGETLFGILSVALGLEPEYLKGMGCSNGYDFVYNYYPHCPQPKLTLGAQGNS 188
            + +EVR+LG  L   +S +LGLE +Y+K +    G     NYYP CP+P+LT G   ++
Sbjct: 154 TYCREVRELGFRLQEAISESLGLEKDYIKNVLGEQGQHMAVNYYPPCPEPELTYGLPAHT 213

Query: 189 DPSFLTILLQDQ-IRGLQV--------------------------LSNDKLKSVDHRVVA 221
           DP+ LTILLQDQ + GLQV                          LSN + KSV HR V 
Sbjct: 214 DPNALTILLQDQQVAGLQVLKDGKWVAVNPHPGAFVINIGDQLQALSNGRYKSVWHRAVV 273

Query: 222 NKHASPRVSVACF 234
           N     R+SVA F
Sbjct: 274 NT-DKERMSVASF 285

Length = 337
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 246
PLN02947374 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02704335 flavonol synthase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02485329 oxidoreductase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.7
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 97.8
PLN03176120 flavanone-3-hydroxylase; Provisional 97.33
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 84.22
>PLN02947 oxidoreductase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-51  Score=380.87  Aligned_cols=228  Identities=31%  Similarity=0.466  Sum_probs=189.4

Q ss_pred             CcchHHHHHCCCCCCCCcccCCCcchhhhhhc--c--cCCccceeEecCCCCc---H----H------------------
Q 043484           12 KVGVKGLVDAGVVNIPRIFIQPSEELAQELIT--H--WSNLQVLVVDLGGIRH---N----K------------------   62 (246)
Q Consensus        12 ~~~v~~l~~~~~~~vP~~yv~p~~~~~~~~~~--~--~~~~~IPVIDLs~l~~---~----e------------------   62 (246)
                      ..+||.|+++|.++||++||+|+++++.....  .  ....+||||||+.+..   .    +                  
T Consensus        25 ~~~v~~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI  104 (374)
T PLN02947         25 QKGVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRGSNRPHVLATLAAACREYGFFQVVNHGV  104 (374)
T ss_pred             ecCHHHHHhcCCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCCccHHHHHHHHHHHHHHCcEEEEEcCCC
Confidence            45899999999999999999999998753210  0  1345799999998742   1    1                  


Q ss_pred             ----HHHH--------------HHHHhhcCCCCccccccCCCcccccCCchhhhccccccCCCCCCCCCCc---hhhhhh
Q 043484           63 ----LEDI--------------VDQFYTRYPTRSIKFNCNFDLYFSRIASWRDMLGIYNFDINSLDPNQLP---EVCRYK  121 (246)
Q Consensus        63 ----~~~~--------------K~k~~~~~~~~~~GY~~~~~~~~~~~~dw~e~~~~~~~~p~~~~~~~~P---~~fr~~  121 (246)
                          ++++              |++|+..+.....||+..+....++..+|+|.|.+ ...|....++.||   ++||++
T Consensus       105 p~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~-~~~p~~~~~~~WP~~~~~fr~~  183 (374)
T PLN02947        105 PSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKL-VCHPLSDVLPHWPSSPADLRKV  183 (374)
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceee-ecCCcccccccCccchHHHHHH
Confidence                2333              77865544444568876655455678899999988 6666543456676   689999


Q ss_pred             hhhhhchHHHHHHHHHHHHHHHHHHHhcCCC---hHHHhhccCCCccccEEeecCCCCCCccCCcccCCcCCCCCceeee
Q 043484          122 LYPYTTMAHMKEVRKLGETLFGILSVALGLE---PEYLKGMGCSNGYDFVYNYYPHCPQPKLTLGAQGNSDPSFLTILLQ  198 (246)
Q Consensus       122 ~~~y~~~~~~~~~~~l~~~ll~~la~~Lgl~---~~~l~~~~~~~~~~~r~~~YPp~p~p~~~~G~~~HtD~~~lTlL~q  198 (246)
                      +++|     ++++++|+.+|+++||++|||+   .++|.+.+....+.+|+|||||||+|+.++|+++|||+|+||||+|
T Consensus       184 ~~~Y-----~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Q  258 (374)
T PLN02947        184 AATY-----AKATKRLFLELMEAILESLGIVKRGSDELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQ  258 (374)
T ss_pred             HHHH-----HHHHHHHHHHHHHHHHHHcCCCccchHHHHHHhcCcceeeeeecCCCCCCcccccCCCCccCCCceEEEEe
Confidence            9999     9999999999999999999996   5677776666678899999999999999999999999999999999


Q ss_pred             CCCCceEEe--------------------------eCCeeecccceeeccCCCCCeeEEEEeecCCCCC-CccCC
Q 043484          199 DQIRGLQVL--------------------------SNDKLKSVDHRVVANKHASPRVSVACFFAGHATT-VSPLP  246 (246)
Q Consensus       199 d~v~GLQV~--------------------------sng~~kS~~HRVv~~~~~~~R~Sia~F~~P~~d~-i~Plp  246 (246)
                      |+++||||+                          |||+|||++|||++| ..++|||||||++|+.|+ |.|+|
T Consensus       259 d~v~GLQV~~~g~Wi~V~p~pga~VVNvGD~Lq~~SNG~~kS~~HRVv~~-~~~~R~Sia~F~~P~~d~~i~Pl~  332 (374)
T PLN02947        259 DEVEGLQIMHAGRWVTVEPIPGSFVVNVGDHLEIFSNGRYKSVLHRVRVN-STKPRISVASLHSLPFERVVGPAP  332 (374)
T ss_pred             cCCCCeeEeECCEEEeCCCCCCeEEEEeCceeeeeeCCEEeccccccccC-CCCCEEEEEEEecCCCCCEEeCCh
Confidence            999999997                          999999999999999 889999999999999999 99985

>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-12
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-12
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 5e-12
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-09
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure 
Iteration: 1

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 70/155 (45%), Gaps = 32/155 (20%)
Query: 123 YPYTTMAHMKEVRKLGETLFGILSVALGLEPEYL-KGMGCSNGY--DFVYNYYPHCPQPK 179
           Y   T  + K +R L   +F  LSV LGLEP+ L K +G           NYYP CPQP+
Sbjct: 164 YIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPE 223
Query: 180 LTLGAQGNSDPSFLTILLQDQIRGLQ--------------------------VLSNDKLK 213
           L LG + ++D S LT +L + + GLQ                          +LSN K K
Sbjct: 224 LALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK 283
Query: 214 SVDHRVVANKHASPRVSVACFFA--GHATTVSPLP 246
           S+ HR + NK    R+S A F         + PLP
Sbjct: 284 SILHRGLVNKEKV-RISWAVFCEPPKDKIVLKPLP 317
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 4e-57
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 3e-43
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 4e-28
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 3e-22
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 4e-21
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 4e-18
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  184 bits (470), Expect = 4e-57
 Identities = 74/320 (23%), Positives = 111/320 (34%), Gaps = 92/320 (28%)

Query: 13  VGVKGLVDAGVVNIPRIFIQPSEEL-----AQELITHWSNLQVLVVDLGGIR-------- 59
             V+ L  +G+++IP+ +I+P EEL                QV  +DL  I         
Sbjct: 5   ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRE 64

Query: 60  --------------------H-------NKLEDIVDQFY------------TRYPTRSIK 80
                               H        +++   ++F+             +   +   
Sbjct: 65  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124

Query: 81  FNCNFDLYFSRIASWRDMLGIYNFDINSLDPN---QLPEVCRYKLYPYTTMAHMKEVRKL 137
           +        S    W D      +     D +   + P         Y      K +R L
Sbjct: 125 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYA-----KCLRLL 179

Query: 138 GETLFGILSVALGLEPEYL-KGMGCSNGYDF--VYNYYPHCPQPKLTLGAQGNSDPSFLT 194
              +F  LSV LGLEP+ L K +G           NYYP CPQP+L LG + ++D S LT
Sbjct: 180 ATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 239

Query: 195 ILLQDQIRGLQV--------------------------LSNDKLKSVDHRVVANKHASPR 228
            +L + + GLQ+                          LSN K KS+ HR + NK    R
Sbjct: 240 FILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKE-KVR 298

Query: 229 VSVACFF--AGHATTVSPLP 246
           +S A F         + PLP
Sbjct: 299 ISWAVFCEPPKDKIVLKPLP 318
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=3.8e-51  Score=374.57  Aligned_cols=229  Identities=30%  Similarity=0.441  Sum_probs=189.5

Q ss_pred             CCcchHHHHHCCCCCCCCcccCCCcchhhhhhc--cc---CCccceeEecCCCCc---H---H-----------------
Q 043484           11 TKVGVKGLVDAGVVNIPRIFIQPSEELAQELIT--HW---SNLQVLVVDLGGIRH---N---K-----------------   62 (246)
Q Consensus        11 ~~~~v~~l~~~~~~~vP~~yv~p~~~~~~~~~~--~~---~~~~IPVIDLs~l~~---~---e-----------------   62 (246)
                      .+++||+|+++|+++||++||+|+++++.....  ..   ...+||||||+.+..   +   +                 
T Consensus         3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v   82 (356)
T 1gp6_A            3 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL   82 (356)
T ss_dssp             CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             CcccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEE
Confidence            457899999999999999999998887652210  00   123699999998742   1   0                 


Q ss_pred             ---------HHHH--------------HHHHhhcCC-CCccccccCCCcccccCCchhhhccccccCCCC-CCCCCCc--
Q 043484           63 ---------LEDI--------------VDQFYTRYP-TRSIKFNCNFDLYFSRIASWRDMLGIYNFDINS-LDPNQLP--  115 (246)
Q Consensus        63 ---------~~~~--------------K~k~~~~~~-~~~~GY~~~~~~~~~~~~dw~e~~~~~~~~p~~-~~~~~~P--  115 (246)
                               +++|              |++|..... ....||+........+..||+|+|.+ ...|.. ..++.||  
T Consensus        83 ~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~-~~~p~~~~~~~~wP~~  161 (356)
T 1gp6_A           83 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFH-LAYPEEKRDLSIWPKT  161 (356)
T ss_dssp             ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEE-EEESGGGCCGGGSCCS
T ss_pred             eCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeee-ecCCccccccccCCCc
Confidence                     3333              777554333 35689987766566778999999999 555532 2344565  


Q ss_pred             -hhhhhhhhhhhchHHHHHHHHHHHHHHHHHHHhcCCChHHHhhccC---CCccccEEeecCCCCCCccCCcccCCcCCC
Q 043484          116 -EVCRYKLYPYTTMAHMKEVRKLGETLFGILSVALGLEPEYLKGMGC---SNGYDFVYNYYPHCPQPKLTLGAQGNSDPS  191 (246)
Q Consensus       116 -~~fr~~~~~y~~~~~~~~~~~l~~~ll~~la~~Lgl~~~~l~~~~~---~~~~~~r~~~YPp~p~p~~~~G~~~HtD~~  191 (246)
                       +.||+++++|     +++|.+|+.+|+++||++|||++++|.+.+.   ...+.+|+||||||++|+.++|+++|||+|
T Consensus       162 ~~~fr~~~~~y-----~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g  236 (356)
T 1gp6_A          162 PSDYIEATSEY-----AKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVS  236 (356)
T ss_dssp             STTHHHHHHHH-----HHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCS
T ss_pred             chhhhHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCC
Confidence             6899999999     9999999999999999999999999999886   466789999999999999999999999999


Q ss_pred             CCceeeeCCCCceEEe--------------------------eCCeeecccceeeccCCCCCeeEEEEeecCCCCC--Cc
Q 043484          192 FLTILLQDQIRGLQVL--------------------------SNDKLKSVDHRVVANKHASPRVSVACFFAGHATT--VS  243 (246)
Q Consensus       192 ~lTlL~qd~v~GLQV~--------------------------sng~~kS~~HRVv~~~~~~~R~Sia~F~~P~~d~--i~  243 (246)
                      +||||+||+++||||+                          |||+|||+.|||++| .+++|+|+|||++|+.|+  |.
T Consensus       237 ~lTlL~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~-~~~~R~Sia~F~~P~~d~~~i~  315 (356)
T 1gp6_A          237 ALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVN-KEKVRISWAVFCEPPKDKIVLK  315 (356)
T ss_dssp             SEEEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCC-SSCCEEEEEEEEECCTTTCEEC
T ss_pred             eEEEEEEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCC-CCCCEEEEEEeecCCCCCcEEe
Confidence            9999999999999998                          999999999999999 889999999999999997  88


Q ss_pred             cCC
Q 043484          244 PLP  246 (246)
Q Consensus       244 Plp  246 (246)
                      |+|
T Consensus       316 pl~  318 (356)
T 1gp6_A          316 PLP  318 (356)
T ss_dssp             CCG
T ss_pred             CCh
Confidence            875
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 246
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 4e-18
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 4e-11
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 6e-11
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-06
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 80.0 bits (196), Expect = 4e-18
 Identities = 70/315 (22%), Positives = 114/315 (36%), Gaps = 82/315 (26%)

Query: 13  VGVKGLVDAGVVNIPRIFIQPSEEL-----AQELITHWSNLQVLVVDLGGIRHN------ 61
             V+ L  +G+++IP+ +I+P EEL                QV  +DL  I  +      
Sbjct: 4   ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRE 63

Query: 62  -----------------------------KLEDIVDQFYTR--------YPTRSIKFNCN 84
                                        +++   ++F++            ++      
Sbjct: 64  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 123

Query: 85  FDLYFSRIASWRDMLGIYNFDINSLDPNQLPEVCRYKLYPY--TTMAHMKEVRKLGETLF 142
           +    +  AS +     Y F +   +  +   +       Y   T  + K +R L   +F
Sbjct: 124 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVF 183

Query: 143 GILSVALGLEPEYLK---GMGCSNGYDFVYNYYPHCPQPKLTLGAQGNSDPSFLTILLQD 199
             LSV LGLEP+ L+   G           NYYP CPQP+L LG + ++D S LT +L +
Sbjct: 184 KALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN 243

Query: 200 QIR--------------------------GLQVLSNDKLKSVDHRVVANKHASPRVSVAC 233
            +                            L++LSN K KS+ HR + NK    R+S A 
Sbjct: 244 MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNK-EKVRISWAV 302

Query: 234 FF--AGHATTVSPLP 246
           F         + PLP
Sbjct: 303 FCEPPKDKIVLKPLP 317
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.8e-47  Score=343.65  Aligned_cols=228  Identities=31%  Similarity=0.447  Sum_probs=183.9

Q ss_pred             CcchHHHHHCCCCCCCCcccCCCcchhhhhh-----cccCCccceeEecCCCCcH----------H--------------
Q 043484           12 KVGVKGLVDAGVVNIPRIFIQPSEELAQELI-----THWSNLQVLVVDLGGIRHN----------K--------------   62 (246)
Q Consensus        12 ~~~v~~l~~~~~~~vP~~yv~p~~~~~~~~~-----~~~~~~~IPVIDLs~l~~~----------e--------------   62 (246)
                      +..||+||++|+++||++||||+++++....     ......+||||||+.+..+          +              
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            4589999999999999999999999887531     1234568999999987531          0              


Q ss_pred             --------HHHH--------------HHHHhhcCCCC-ccccccCCCcccccCCchhhhccccccCCC-CCCCCCCc---
Q 043484           63 --------LEDI--------------VDQFYTRYPTR-SIKFNCNFDLYFSRIASWRDMLGIYNFDIN-SLDPNQLP---  115 (246)
Q Consensus        63 --------~~~~--------------K~k~~~~~~~~-~~GY~~~~~~~~~~~~dw~e~~~~~~~~p~-~~~~~~~P---  115 (246)
                              ++++              |++|....... ..||+........+..+|.+.+.. ...+. ...++.||   
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~wp~~~  161 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFH-LAYPEEKRDLSIWPKTP  161 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEE-EEESGGGCCGGGSCCSS
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcc-ccccccccccccccccc
Confidence                    2332              77754433222 334555555456677889888765 43332 22334555   


Q ss_pred             hhhhhhhhhhhchHHHHHHHHHHHHHHHHHHHhcCCChHHHhhccC---CCccccEEeecCCCCCCccCCcccCCcCCCC
Q 043484          116 EVCRYKLYPYTTMAHMKEVRKLGETLFGILSVALGLEPEYLKGMGC---SNGYDFVYNYYPHCPQPKLTLGAQGNSDPSF  192 (246)
Q Consensus       116 ~~fr~~~~~y~~~~~~~~~~~l~~~ll~~la~~Lgl~~~~l~~~~~---~~~~~~r~~~YPp~p~p~~~~G~~~HtD~~~  192 (246)
                      +.|++.+++|     +++|.+|+.+|++++|++||+++++|.+.+.   .....+|+||||||+.++..+|+++|||+|+
T Consensus       162 ~~f~e~~~~~-----~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~  236 (349)
T d1gp6a_         162 SDYIEATSEY-----AKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSA  236 (349)
T ss_dssp             TTHHHHHHHH-----HHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSS
T ss_pred             chHHHHHHHH-----HHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcc
Confidence            7899999999     9999999999999999999999999988753   3456799999999999988999999999999


Q ss_pred             CceeeeCCCCceEEe--------------------------eCCeeecccceeeccCCCCCeeEEEEeecCCCCC-C-cc
Q 043484          193 LTILLQDQIRGLQVL--------------------------SNDKLKSVDHRVVANKHASPRVSVACFFAGHATT-V-SP  244 (246)
Q Consensus       193 lTlL~qd~v~GLQV~--------------------------sng~~kS~~HRVv~~~~~~~R~Sia~F~~P~~d~-i-~P  244 (246)
                      ||||+||+++||||.                          |||+|||+.|||++| .+++|||++||++|+.|+ | +|
T Consensus       237 lTlL~q~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~-~~~~R~Si~~F~~p~~d~~i~~p  315 (349)
T d1gp6a_         237 LTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVN-KEKVRISWAVFCEPPKDKIVLKP  315 (349)
T ss_dssp             EEEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCC-SSCCEEEEEEEEECCTTTCEECC
T ss_pred             eEEEeccCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCC-CCCCeEEEEEEecCCCcceeecC
Confidence            999999999999997                          999999999999999 889999999999999997 5 89


Q ss_pred             CC
Q 043484          245 LP  246 (246)
Q Consensus       245 lp  246 (246)
                      ||
T Consensus       316 l~  317 (349)
T d1gp6a_         316 LP  317 (349)
T ss_dssp             CG
T ss_pred             CH
Confidence            86
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure