Citrus Sinensis ID: 043521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MISCQLFFFYFVYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHcHHccccccHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHHHcHHHHEEHEHcHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MISCQLFFFYFVYFSQHidgmrrnhmlstpDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTalaipddgk
Flexible Loop (DISEMBL)
MISCQLFFFYFVYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTalaipddgk
Low Complexity Region (SEG)
MISCQLFFFYFVYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK
Disordered region (IsUnstruct)
**SCQLFFFYFVYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI*****
Disordered Region (DISOPRED)
**SCQLFFFYFVYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD***
Disordered Region (DISEMBL)
MISCQLFFFYFVYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK
Disordered Region (DISPRO)
MISCQLFFFYFVYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDD**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISCQLFFFYFVYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
O04899	240	Caffeoyl-CoA O-methyltran	N/A	no	0.676	0.2	0.833	2e-16
Q40313	247	Caffeoyl-CoA O-methyltran	N/A	no	0.676	0.194	0.833	3e-16
Q9SWB8	247	Caffeoyl-CoA O-methyltran	N/A	no	0.676	0.194	0.812	5e-16
P28034	241	Caffeoyl-CoA O-methyltran	N/A	no	0.676	0.199	0.812	7e-16
O65862	247	Caffeoyl-CoA O-methyltran	yes	no	0.676	0.194	0.791	9e-16
Q43237	242	Caffeoyl-CoA O-methyltran	no	no	0.676	0.198	0.812	9e-16
O81185	246	Caffeoyl-CoA O-methyltran	N/A	no	0.676	0.195	0.791	1e-15
Q9ZTT5	259	Caffeoyl-CoA O-methyltran	N/A	no	0.676	0.185	0.791	1e-15
Q43095	247	Caffeoyl-CoA O-methyltran	N/A	no	0.676	0.194	0.791	1e-15
O24149	242	Caffeoyl-CoA O-methyltran	N/A	no	0.676	0.198	0.791	1e-15

>sp|O04899|CAMT5_TOBAC Caffeoyl-CoA O-methyltransferase 5 OS=Nicotiana tabacum GN=CCOAOMT5 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
          N M ++ DE QFL+MLLKLINAKNTMEIGVYTGYSLL TALAIPDDGK
Sbjct: 52 NLMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAIPDDGK 99

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates 5-hydroxyferulolyl-CoA more efficiently than caffeoyl-CoA.
Nicotiana tabacum (taxid: 4097)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 4

>sp|Q40313|CAMT_MEDSA Caffeoyl-CoA O-methyltransferase OS=Medicago sativa GN=CCOMT PE=1 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFLSMLLKLINAKNTMEIGVYTGYSLL TALAIP+DGK
Sbjct: 59  NIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGK 106

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9SWB8|CAMT2_EUCGL Caffeoyl-CoA O-methyltransferase 2 OS=Eucalyptus globulus GN=CCOAOMT2 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/48 (81%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFL+MLLKLINAKNTMEIGVYTGYSLL TALA+PDDGK
Sbjct: 59  NLMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPDDGK 106

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Eucalyptus globulus (taxid: 34317)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|P28034|CAMT_PETCR Caffeoyl-CoA O-methyltransferase OS=Petroselinum crispum PE=1 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/48 (81%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFL+MLLKLINAKNTMEIGVYTGYSLL TALA+PDDGK
Sbjct: 53  NLMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPDDGK 100

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Petroselinum crispum (taxid: 4043)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65862|CAMT1_POPTR Caffeoyl-CoA O-methyltransferase 1 OS=Populus trichocarpa GN=CCOAOMT1 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFL+MLLKL+NAKNTMEIGVYTGYSLL TALAIP+DGK
Sbjct: 59  NIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGK 106

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43237|CAMT_VITVI Caffeoyl-CoA O-methyltransferase OS=Vitis vinifera PE=2 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/48 (81%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFL+MLLKLINAKNTMEIGVYTGYSLL TALA+PDDGK
Sbjct: 54  NIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPDDGK 101

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Vitis vinifera (taxid: 29760)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O81185|CAMT1_EUCGL Caffeoyl-CoA O-methyltransferase 1 OS=Eucalyptus globulus GN=CCOMT PE=2 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFL+MLLKLINAKNTMEIGV+TGYSLL TALA+PDDGK
Sbjct: 59  NIMTTSADEGQFLNMLLKLINAKNTMEIGVFTGYSLLATALALPDDGK 106

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Eucalyptus globulus (taxid: 34317)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9ZTT5|CAMT_PINTA Caffeoyl-CoA O-methyltransferase OS=Pinus taeda GN=CCOAOMT PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/48 (79%), Positives = 42/48 (87%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFL +LLKLINAKNTMEIGVYTGYSLL TALA+PDDGK
Sbjct: 71  NLMTTSADEGQFLGLLLKLINAKNTMEIGVYTGYSLLSTALALPDDGK 118

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Pinus taeda (taxid: 3352)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43095|CAMT_POPTM Caffeoyl-CoA O-methyltransferase OS=Populus tremuloides PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFL+MLLKL+NAKNTMEIGVYTGYSLL TALAIP+DGK
Sbjct: 59  NIMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGK 106

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O24149|CAMT2_TOBAC Caffeoyl-CoA O-methyltransferase 2 OS=Nicotiana tabacum GN=CCOAOMT2 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFLSMLLKLINAKNTMEIGV+TGYSLL TA+A+PDDGK
Sbjct: 54  NLMTTSADEGQFLSMLLKLINAKNTMEIGVFTGYSLLATAMALPDDGK 101

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates 5-hydroxyferulolyl-CoA more efficiently than caffeoyl-CoA.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
429142523	247	caffeoyl-CoA O-methyltransferase [Eriobo	0.676	0.194	0.833	8e-15
408354595	247	caffeoyl-CoA O-methyltransferase [Pyrus	0.676	0.194	0.833	8e-15
2511737	240	caffeoyl-CoA 3-O-methyltransferase 5 [Ni	0.676	0.2	0.833	9e-15
30580324	240	RecName: Full=Caffeoyl-CoA O-methyltrans	0.676	0.2	0.833	9e-15
194321206	247	caffeoyl-CoA-O-methyltransferase [Gossyp	0.676	0.194	0.833	9e-15
363542031	237	caffeoyl-CoA 3-o-methyltransferase, part	0.676	0.202	0.833	1e-14
363542019	237	caffeoyl-CoA 3-o-methyltransferase, part	0.676	0.202	0.833	1e-14
30580341	247	RecName: Full=Caffeoyl-CoA O-methyltrans	0.676	0.194	0.833	1e-14
357475283	247	Caffeoyl-CoA O-methyltransferase [Medica	0.676	0.194	0.833	1e-14
217072280	247	unknown [Medicago truncatula]	0.676	0.194	0.833	1e-14

>gi|429142523|gb|AFZ76980.1| caffeoyl-CoA O-methyltransferase [Eriobotrya japonica]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFL+MLLKLINAKNTMEIGVYTGYSLL TALAIPDDGK
Sbjct: 59  NIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAIPDDGK 106

Source: Eriobotrya japonica

Species: Eriobotrya japonica

Genus: Eriobotrya

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|408354595|gb|AFU54611.1| caffeoyl-CoA O-methyltransferase [Pyrus x bretschneideri]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFL+MLLKLINAKNTMEIGVYTGYSLL TALAIPDDGK
Sbjct: 59  NIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAIPDDGK 106

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2511737|gb|AAB80931.1| caffeoyl-CoA 3-O-methyltransferase 5 [Nicotiana tabacum]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
          N M ++ DE QFL+MLLKLINAKNTMEIGVYTGYSLL TALAIPDDGK
Sbjct: 52 NLMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAIPDDGK 99

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30580324|sp|O04899.1|CAMT5_TOBAC RecName: Full=Caffeoyl-CoA O-methyltransferase 5; AltName: Full=Trans-caffeoyl-CoA 3-O-methyltransferase 5; Short=CCoAMT-5; Short=CCoAOMT-5 gi|1679853|emb|CAB05369.1| caffeoyl-CoA O-methyltransferase 5 [Nicotiana tabacum]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
          N M ++ DE QFL+MLLKLINAKNTMEIGVYTGYSLL TALAIPDDGK
Sbjct: 52 NLMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAIPDDGK 99

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194321206|gb|ACF48821.1| caffeoyl-CoA-O-methyltransferase [Gossypium hirsutum]

 Score = 84.0 bits (206), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFL+MLLKLINAKNTMEIGVYTGYSLL TALAIPDDGK
Sbjct: 59  NLMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAIPDDGK 106

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363542031|gb|AEW26132.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago sativa subsp. caerulea]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
          N M ++ DE QFLSMLLKLINAKNTMEIGVYTGYSLL TALAIP+DGK
Sbjct: 50 NIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGK 97

Source: Medicago sativa subsp. caerulea

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363542019|gb|AEW26126.1| caffeoyl-CoA 3-o-methyltransferase, partial [Medicago falcata]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
          N M ++ DE QFLSMLLKLINAKNTMEIGVYTGYSLL TALAIP+DGK
Sbjct: 50 NIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGK 97

Source: Medicago falcata

Species: Medicago falcata

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30580341|sp|Q40313.1|CAMT_MEDSA RecName: Full=Caffeoyl-CoA O-methyltransferase; AltName: Full=Trans-caffeoyl-CoA 3-O-methyltransferase; Short=CCoAMT; Short=CCoAOMT gi|62737984|pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase gi|62737985|pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase gi|62737986|pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase gi|62737987|pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase gi|62737988|pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O- Methyltransferase gi|62737989|pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O- Methyltransferase gi|62737990|pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O- Methyltransferase gi|62737991|pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O- Methyltransferase gi|684942|gb|AAC28973.1| S-adenosyl-L-methionine:trans-caffeoyl-CoA 3-O-methyltransferase [Medicago sativa]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFLSMLLKLINAKNTMEIGVYTGYSLL TALAIP+DGK
Sbjct: 59  NIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGK 106

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475283|ref|XP_003607927.1| Caffeoyl-CoA O-methyltransferase [Medicago truncatula] gi|355508982|gb|AES90124.1| Caffeoyl-CoA O-methyltransferase [Medicago truncatula] gi|388498154|gb|AFK37143.1| unknown [Medicago truncatula]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFLSMLLKLINAKNTMEIGVYTGYSLL TALAIP+DGK
Sbjct: 59  NIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGK 106

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072280|gb|ACJ84500.1| unknown [Medicago truncatula]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFLSMLLKLINAKNTMEIGVYTGYSLL TALAIP+DGK
Sbjct: 59  NIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGK 106

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
TAIR|locus:2124286	259	CCoAOMT1 "caffeoyl coenzyme A	0.676	0.185	0.75	8.8e-15
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.577	0.176	0.731	5e-12
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.647	0.182	0.673	1.1e-11
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.577	0.175	0.707	2.8e-11
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.647	0.198	0.586	4.5e-11
UNIPROTKB|Q7F8T6	292	ROMT-17 "Tricin synthase 2" [O	0.746	0.181	0.596	5.2e-11
DICTYBASE|DDB_G0271590	251	omt1 "O-methyltransferase fami	0.676	0.191	0.5	2.1e-08
TAIR|locus:2079557	290	OMTF3 "O-MTase family 3 protei	0.605	0.148	0.511	7e-08
ZFIN|ZDB-GENE-030131-1072	286	comtd1 "catechol-O-methyltrans	0.690	0.171	0.469	2.4e-07
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.647	0.172	0.5	2.6e-07

TAIR|locus:2124286 CCoAOMT1 "caffeoyl coenzyme A O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 36/48 (75%), Positives = 43/48 (89%)

Query:    24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
             N M ++ DE QFL+ML+KL+NAKNTMEIGVYTGYSLL TALA+P+DGK
Sbjct:    71 NIMTTSADEGQFLNMLIKLVNAKNTMEIGVYTGYSLLATALALPEDGK 118

GO:0005634 "nucleus" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 30/41 (73%), Positives = 38/41 (92%)

Query:    31 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
             DE  FLSML+K++NAKNT+EIGV+TGYSLL TALA+P+DG+
Sbjct:    55 DEGHFLSMLVKIMNAKNTIEIGVFTGYSLLTTALALPEDGR 95

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 159 (61.0 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 31/46 (67%), Positives = 38/46 (82%)

Query:    26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
             M S+ DEAQ L MLLK+  AK T+E+GV+TGYSLL TALA+P+DGK
Sbjct:    63 MQSSADEAQLLGMLLKMAGAKRTIEVGVFTGYSLLATALALPEDGK 108

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 29/41 (70%), Positives = 37/41 (90%)

Query:    31 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
             DE+ FLSML+K+INAKNT+EIGV+TGYSL   ALA+P+DG+
Sbjct:    55 DESLFLSMLVKIINAKNTIEIGVFTGYSLFTVALALPEDGR 95

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query:    26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
             M + PD  Q + MLL L+NA+ T+E+GV+TGYSLL TAL +P+DGK
Sbjct:    47 MATAPDAGQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGK 92

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q7F8T6 ROMT-17 "Tricin synthase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 156 (60.0 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 34/57 (59%), Positives = 41/57 (71%)

Query:    15 SQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
             S+H  G     M S P+E Q LS+LL L  AKNT+E+GV+TG S+L TALAIPDDGK
Sbjct:    99 SEHTYGF----MSSPPEEGQLLSLLLNLTGAKNTIEVGVFTGCSVLATALAIPDDGK 151

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

DICTYBASE|DDB_G0271590 omt1 "O-methyltransferase family 3 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 131 (51.2 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 24/48 (50%), Positives = 38/48 (79%)

Query:    24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
             ++ML+  ++ QF ++LLK++NAK  +++GVYTG S L  AL++PDDGK
Sbjct:    57 SYMLTDGNQNQFFTLLLKVLNAKKAIDVGVYTGLSSLSFALSMPDDGK 104

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2079557 OMTF3 "O-MTase family 3 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 22/43 (51%), Positives = 34/43 (79%)

Query:    29 TPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
             +PD+AQ L+ML++++ AK  +E+GVYTGYS L  AL +P+ G+
Sbjct:   115 SPDQAQLLAMLVEILGAKRCIEVGVYTGYSSLAVALVLPESGR 157

GO:0005576 "extracellular region" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

ZFIN|ZDB-GENE-030131-1072 comtd1 "catechol-O-methyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 123 (48.4 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query:    23 RNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
             RN M+   ++AQ ++ L KLI A  T+EIG+YTGY+ L  AL +P++G+
Sbjct:   105 RNVMMVASEQAQLMANLAKLIEANKTIEIGLYTGYNALSLALVVPENGR 153

GO:0008171 "O-methyltransferase activity" evidence=IEA

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 122 (48.0 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 23/46 (50%), Positives = 35/46 (76%)

Query:    26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
             M+ + D+AQ ++ L+KLI AK  +E+GV TGY+ L  ALA+PD+G+
Sbjct:    89 MMVSCDQAQLMANLIKLIKAKKVIEVGVLTGYNALSMALALPDNGR 134

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49499	CAMT4_ARATH	2, ., 1, ., 1, ., 1, 0, 4	0.75	0.6760	0.1853	yes	no
O65862	CAMT1_POPTR	2, ., 1, ., 1, ., 1, 0, 4	0.7916	0.6760	0.1943	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019520001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (247 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00008253001	RecName- Full=Stilbene synthase 2; EC=2.3.1.95; AltName- Full=Resveratrol synthase 2; AltName- [...] (392 aa)						•	•		0.900
	CHS2	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence;; The primary product [...] (393 aa)						•			0.899
	GSVIVG00033763001	SubName- Full=Chromosome undetermined scaffold_69, whole genome shotgun sequence; (338 aa)						•			0.899
	GSVIVG00031383001	SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (548 aa)						•			0.899
	GSVIVG00025189001	SubName- Full=Chromosome chr9 scaffold_33, whole genome shotgun sequence; (429 aa)						•			0.899
	GSVIVG00023306001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (508 aa)						•			0.899
	GSVIVG00022179001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (544 aa)						•			0.899
	4CL	SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (378 aa)						•			0.899
	GSVIVG00009242001	RecName- Full=Stilbene synthase 3; EC=2.3.1.95; AltName- Full=Resveratrol synthase 3; AltName- [...] (392 aa)						•			0.899
	GSVIVG00009241001	SubName- Full=Chromosome undetermined scaffold_225, whole genome shotgun sequence; (392 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	71
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	4e-24
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	1e-22
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	1e-18
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	9e-13
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	8e-12

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score = 89.0 bits (221), Expect = 4e-24
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
          + M  +P+E QFLSMLLKLI AK T+EIGV+TGYSLL TALA+P+DGK
Sbjct: 24 SPMQISPEEGQFLSMLLKLIGAKRTLEIGVFTGYSLLATALALPEDGK 71

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score = 86.2 bits (213), Expect = 1e-22
 Identities = 38/48 (79%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFL+MLLKLINAKNTMEIGVYTGYSLL TALA+P+DGK
Sbjct: 59  NIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGK 106

Length = 247

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score = 75.6 bits (186), Expect = 1e-18
 Identities = 30/41 (73%), Positives = 38/41 (92%)

Query: 31 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
          DE  FLSML+K++NAKNT+EIGV+TGYSLL TALA+P+DG+
Sbjct: 55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGR 95

Length = 234

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score = 60.5 bits (146), Expect = 9e-13
 Identities = 24/50 (48%), Positives = 37/50 (74%)

Query: 21  MRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70
           MR + M  +PD+AQ L+ML++++ A+  +E+GVYTGYS L  AL +P+ G
Sbjct: 95  MRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESG 144

Length = 278

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 56.9 bits (138), Expect = 8e-12
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 30 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
          P+    L +L +L   K  +EIG   GYS L+ ALA+PDDG+
Sbjct: 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGR 86

Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.64
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.6
COG4122	219	Predicted O-methyltransferase [General function pr	99.59
PLN02476	278	O-methyltransferase	99.51
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	99.46
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.42
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.81
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.77
PLN03075	296	nicotianamine synthase; Provisional	97.77
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.57
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.56
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.5
PRK07402	196	precorrin-6B methylase; Provisional	97.41
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.35
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.28
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.27
COG4123	248	Predicted O-methyltransferase [General function pr	97.18
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.15
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.14
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.14
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.07
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.04
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.01
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.97
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.84
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	96.82
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	96.8
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	96.77
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	96.73
PRK04457	262	spermidine synthase; Provisional	96.64
PRK06202	232	hypothetical protein; Provisional	96.54
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	96.54
PRK08317	241	hypothetical protein; Provisional	96.54
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.54
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	96.47
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	96.4
PRK11207	197	tellurite resistance protein TehB; Provisional	96.4
PLN02233	261	ubiquinone biosynthesis methyltransferase	96.34
COG2890	280	HemK Methylase of polypeptide chain release factor	96.34
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	96.32
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	96.32
PRK14968	188	putative methyltransferase; Provisional	96.26
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.26
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	96.25
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.24
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	96.19
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	96.17
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	96.16
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	96.14
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	96.12
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	96.11
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	96.1
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	96.09
PRK14902	444	16S rRNA methyltransferase B; Provisional	95.98
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	95.9
PRK10258	251	biotin biosynthesis protein BioC; Provisional	95.84
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	95.81
PF13679	141	Methyltransf_32: Methyltransferase domain	95.81
PRK12335	287	tellurite resistance protein TehB; Provisional	95.78
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	95.76
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	95.74
PRK04266	226	fibrillarin; Provisional	95.71
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	95.66
PRK14903	431	16S rRNA methyltransferase B; Provisional	95.65
TIGR00438	188	rrmJ cell division protein FtsJ.	95.64
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	95.63
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	95.61
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	95.6
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	95.59
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	95.52
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	95.49
PRK14904	445	16S rRNA methyltransferase B; Provisional	95.46
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	95.45
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	95.43
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	95.38
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	95.37
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	95.35
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	95.28
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	95.24
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	95.23
TIGR00740	239	methyltransferase, putative. A simple BLAST search	95.21
PLN02244	340	tocopherol O-methyltransferase	95.12
PRK05785	226	hypothetical protein; Provisional	95.06
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	95.06
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	95.05
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	95.03
PRK14901	434	16S rRNA methyltransferase B; Provisional	94.93
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	94.85
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	94.8
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	94.79
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	94.78
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	94.73
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	94.71
TIGR03438	301	probable methyltransferase. This model represents	94.68
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	94.66
PLN02490	340	MPBQ/MSBQ methyltransferase	94.64
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	94.64
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	94.64
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	94.59
PRK10901	427	16S rRNA methyltransferase B; Provisional	94.5
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	94.48
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	94.43
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	94.34
PRK04148	134	hypothetical protein; Provisional	94.32
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	94.32
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	94.12
PRK00811	283	spermidine synthase; Provisional	94.07
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	94.06
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	93.88
KOG2904	328	consensus Predicted methyltransferase [General fun	93.85
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	93.76
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	93.75
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	93.71
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	93.7
TIGR00452	314	methyltransferase, putative. Known examples to dat	93.63
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	93.61
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	93.42
PRK06922	677	hypothetical protein; Provisional	93.35
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	93.35
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	93.31
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	93.26
PLN02336	475	phosphoethanolamine N-methyltransferase	93.21
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	93.18
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	93.1
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	93.09
PRK13255	218	thiopurine S-methyltransferase; Reviewed	93.01
PRK01581	374	speE spermidine synthase; Validated	92.94
PTZ00146	293	fibrillarin; Provisional	92.91
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	92.77
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	92.73
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	92.72
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	92.59
PLN02672	1082	methionine S-methyltransferase	92.56
PRK14967	223	putative methyltransferase; Provisional	92.53
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	92.41
PLN02336	475	phosphoethanolamine N-methyltransferase	92.35
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	92.23
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	92.05
PLN02585	315	magnesium protoporphyrin IX methyltransferase	91.99
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	91.78
PLN02366	308	spermidine synthase	91.62
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	91.53
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	91.23
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	91.2
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	91.09
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	90.96
PHA03412	241	putative methyltransferase; Provisional	90.91
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	90.83
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	90.8
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	90.48
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	90.45
PHA01634	156	hypothetical protein	90.18
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	89.76
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	89.6
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	89.52
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	89.19
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	89.04
PRK03612	521	spermidine synthase; Provisional	88.83
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	88.82
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	88.71
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	88.47
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	88.01
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	87.85
COG4976	287	Predicted methyltransferase (contains TPR repeat)	87.83
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	87.3
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	86.68
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	86.56
PLN02823	336	spermine synthase	86.36
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	85.24
KOG2899	288	consensus Predicted methyltransferase [General fun	84.7
PHA03411	279	putative methyltransferase; Provisional	84.36
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	83.63
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	83.62
KOG2361	264	consensus Predicted methyltransferase [General fun	83.09
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	81.63
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	81.22
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	80.83

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.64  E-value=1.5e-16  Score=109.66  Aligned_cols=49  Identities=45%  Similarity=0.791  Sum_probs=45.8

Q ss_pred             CcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           23 RNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        23 ~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      .+.|.+++++|+||.++++..+|++||||||++||||+|||+++|++|+
T Consensus        24 ~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~   72 (205)
T PF01596_consen   24 LPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGK   72 (205)
T ss_dssp             TGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSE
T ss_pred             CCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccce
Confidence            6789999999999999999999999999999999999999999998874

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.60  E-value=2.5e-15  Score=106.27  Aligned_cols=56  Identities=68%  Similarity=0.940  Sum_probs=50.0

Q ss_pred             hhhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           16 QHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        16 ~~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      +.+..+..+.|.+++++|+||.++++..+|++||||||++||||+|||+++|++|+
T Consensus        51 ~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~  106 (247)
T PLN02589         51 ELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGK  106 (247)
T ss_pred             HHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCE
Confidence            44445556788999999999999999999999999999999999999999998874

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.59  E-value=2.2e-15  Score=105.45  Aligned_cols=52  Identities=37%  Similarity=0.653  Sum_probs=47.4

Q ss_pred             hhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           20 GMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        20 ~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      +++.+.+++.+++|+||.+|++..+|++||||||++||||+|||.++|++|+
T Consensus        35 a~~~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~   86 (219)
T COG4122          35 ARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGR   86 (219)
T ss_pred             hHhcCCCCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCe
Confidence            4556777777999999999999999999999999999999999999998774

>PLN02476 O-methyltransferase

Probab=99.51  E-value=3.5e-14  Score=102.15  Aligned_cols=56  Identities=43%  Similarity=0.780  Sum_probs=49.6

Q ss_pred             hhhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           16 QHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        16 ~~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      +.+..++.+.|.+++++|++|.++++..+|++||||||++||||+|||++++++|+
T Consensus        90 e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~  145 (278)
T PLN02476         90 EETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGC  145 (278)
T ss_pred             HHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCE
Confidence            34444455789999999999999999999999999999999999999999998774

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.46  E-value=1.1e-13  Score=98.15  Aligned_cols=50  Identities=56%  Similarity=0.974  Sum_probs=48.0

Q ss_pred             cCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           22 RRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        22 ~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      ....|.++|++|+|+.++++..+|+++||||++||||++.+|.++|++|+
T Consensus        51 ~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGr  100 (237)
T KOG1663|consen   51 PGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGR  100 (237)
T ss_pred             cccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCce
Confidence            56789999999999999999999999999999999999999999999985

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.42  E-value=5.1e-13  Score=92.85  Aligned_cols=48  Identities=65%  Similarity=0.998  Sum_probs=45.1

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      +.|.+++++|+||.++++..+|++||||||++|||++|||++++++|+
T Consensus        48 ~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~   95 (234)
T PLN02781         48 SEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGR   95 (234)
T ss_pred             cccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCE
Confidence            568999999999999999999999999999999999999999987764

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.81  E-value=6.9e-06  Score=55.62  Aligned_cols=47  Identities=23%  Similarity=0.250  Sum_probs=41.0

Q ss_pred             hhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           20 GMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        20 ~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +...+.+.+++.++.+...+..  +..+|||||||+|..+..+++..|.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p~   64 (202)
T PRK00121         18 AIEELWPRLSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANPD   64 (202)
T ss_pred             hhcccchhhcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCCC
Confidence            3456788999999999999998  7789999999999999999987653

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.77  E-value=4.3e-05  Score=52.14  Aligned_cols=45  Identities=24%  Similarity=0.349  Sum_probs=35.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      ..+.|.....+...+...+..+|||||||+||.+..+++.+++++
T Consensus        58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~  102 (212)
T PRK13942         58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSG  102 (212)
T ss_pred             EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCC
Confidence            345666666666666777888999999999999999998876554

>PLN03075 nicotianamine synthase; Provisional

Probab=97.77  E-value=3.1e-05  Score=56.52  Aligned_cols=43  Identities=12%  Similarity=-0.093  Sum_probs=37.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccc-hHHHHHHHHhhCCCCC
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVY-TGYSLLYTALAIPDDG   70 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~-~GySal~lA~al~~~g   70 (71)
                      ..++.++++|..+... +|++|+||||| .|+|+++++....+++
T Consensus       107 ~L~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~  150 (296)
T PLN03075        107 KLSKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTT  150 (296)
T ss_pred             HHHHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCC
Confidence            4677889999988887 99999999999 7899999998776665

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.57  E-value=0.00011  Score=49.91  Aligned_cols=43  Identities=30%  Similarity=0.453  Sum_probs=32.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      ..|..-+.+..++...+..+|||||||+|+.+..+++..+++|
T Consensus        61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g  103 (215)
T TIGR00080        61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDG  103 (215)
T ss_pred             chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCC
Confidence            3444445555556667778999999999999999999876544

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.56  E-value=0.0001  Score=49.61  Aligned_cols=41  Identities=27%  Similarity=0.347  Sum_probs=33.3

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           25 HMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        25 ~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .....+.....+..+++..+..+|||||||+|+++..+++.
T Consensus        59 ~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~   99 (212)
T PRK00312         59 QTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL   99 (212)
T ss_pred             CeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH
Confidence            34567777777777777778899999999999999988875

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.50  E-value=0.00017  Score=48.87  Aligned_cols=28  Identities=29%  Similarity=0.379  Sum_probs=23.6

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      .+..+|||||||+||.+..+++.++++|
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g   98 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRG   98 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCC
Confidence            4446999999999999999999887554

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.41  E-value=0.00032  Score=46.80  Aligned_cols=46  Identities=22%  Similarity=0.159  Sum_probs=37.1

Q ss_pred             cCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           22 RRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        22 ~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+.+...++..+++...+...+..+|||+|||+|+.++++++..+
T Consensus        18 ~~~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~   63 (196)
T PRK07402         18 LPGIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP   63 (196)
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC
Confidence            3467777888887777777766778999999999999999987544

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00029  Score=49.44  Aligned_cols=42  Identities=26%  Similarity=0.348  Sum_probs=31.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      -++.|..-..+..++...+..+|||||||+||.|--||+-..
T Consensus        54 tis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~   95 (209)
T COG2518          54 TISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG   95 (209)
T ss_pred             eecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC
Confidence            345554555566666777888999999999999999997543

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.28  E-value=0.00084  Score=45.06  Aligned_cols=58  Identities=19%  Similarity=0.363  Sum_probs=35.2

Q ss_pred             HHHHhhhhhhhhcCcCCCCCHHH--HHHHHH--HHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           10 YFVYFSQHIDGMRRNHMLSTPDE--AQFLSM--LLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~i~~~~--g~~L~~--l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      |.++.++.......-.+..+++.  ..+...  ++...+.++|||||||+|+.++.+|..-+
T Consensus         4 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~~~   65 (181)
T TIGR00138         4 YLELLQKWNKRFNLTSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIARP   65 (181)
T ss_pred             HHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHHCC
Confidence            44555555444444333332222  223222  34556789999999999999999986543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.27  E-value=0.00056  Score=45.20  Aligned_cols=44  Identities=23%  Similarity=0.296  Sum_probs=32.4

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+.+.++...++-..+...+..+|||||||+|+.++.+++..+
T Consensus        11 ~~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~   54 (187)
T PRK08287         11 KVPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP   54 (187)
T ss_pred             CCCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC
Confidence            34444455455555555666888999999999999999998764

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.18  E-value=0.00035  Score=50.07  Aligned_cols=55  Identities=18%  Similarity=0.117  Sum_probs=47.4

Q ss_pred             HhhhhhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           13 YFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        13 ~~~~~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .++++...+..+.+..+-+ +-+|..+++....++|||||||.|.-++.+|+..++
T Consensus        14 ~~~~~~I~q~~~~~~~~~D-aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~   68 (248)
T COG4123          14 TFKQFFIIQDRCGFRYGTD-AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK   68 (248)
T ss_pred             cccceEEEeCCCccccccH-HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC
Confidence            3466666777788888886 999999999999999999999999999999987553

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.15  E-value=0.00072  Score=44.39  Aligned_cols=37  Identities=19%  Similarity=0.256  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           30 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        30 ~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .+.+.+|...+...++++|||+|||+|+.++.+++.-
T Consensus         5 ~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~   41 (179)
T TIGR00537         5 AEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG   41 (179)
T ss_pred             CccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC
Confidence            3445777777788888999999999999999998753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.14  E-value=0.0011  Score=43.56  Aligned_cols=36  Identities=22%  Similarity=0.202  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .++|...+...+.++|||+|||+|.-++.+++..|+
T Consensus        20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~   55 (170)
T PF05175_consen   20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPD   55 (170)
T ss_dssp             HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTC
T ss_pred             HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCC
Confidence            356666666669999999999999999999987664

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.14  E-value=0.00069  Score=47.42  Aligned_cols=39  Identities=21%  Similarity=0.282  Sum_probs=30.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .-.|..-..++.++...+|+.|+|+|++.|-|++|+|+-
T Consensus        15 ~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~m   53 (206)
T PF04989_consen   15 IQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASM   53 (206)
T ss_dssp             SS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHH
Confidence            345667889999999999999999999999999999863

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.07  E-value=0.00084  Score=47.82  Aligned_cols=54  Identities=19%  Similarity=0.247  Sum_probs=37.3

Q ss_pred             hhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           18 IDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        18 ~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      +...+...-++=|....++-+.+...+-.+|||-|||+|..|.+||+++.++|+
T Consensus        14 ~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~   67 (247)
T PF08704_consen   14 TLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGH   67 (247)
T ss_dssp             HHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSE
T ss_pred             HHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeE
Confidence            334455555677777888889999999999999999999999999999988874

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.04  E-value=0.0005  Score=47.58  Aligned_cols=43  Identities=26%  Similarity=0.305  Sum_probs=27.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      ..|..-..+-.++...+-.+|||||||+||.|-.+|....+.|
T Consensus        56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g   98 (209)
T PF01135_consen   56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVG   98 (209)
T ss_dssp             --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTE
T ss_pred             hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccc
Confidence            4454444444444466777999999999999999998776654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.01  E-value=0.00086  Score=48.44  Aligned_cols=51  Identities=24%  Similarity=0.388  Sum_probs=43.6

Q ss_pred             hcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           21 MRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        21 ~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      .+++.-.+-|....++-+.+...+-.+|||.|||+|.-|.+||+++.+.|+
T Consensus        71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~  121 (256)
T COG2519          71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGH  121 (256)
T ss_pred             CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCce
Confidence            455555666777888888999999999999999999999999999998774

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.97  E-value=0.0017  Score=39.05  Aligned_cols=28  Identities=21%  Similarity=0.299  Sum_probs=23.2

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ...+.++|||||||.|..+..+++..|+
T Consensus        16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~   43 (124)
T TIGR02469        16 RLRPGDVLWDIGAGSGSITIEAARLVPN   43 (124)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCC
Confidence            3344579999999999999999998764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.84  E-value=0.001  Score=39.70  Aligned_cols=22  Identities=18%  Similarity=0.170  Sum_probs=19.6

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +.++|||||||+|..++++++.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~   22 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARL   22 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHH
T ss_pred             CCCEEEEEcCcCCHHHHHHHhc
Confidence            3578999999999999999983

...

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=96.82  E-value=0.0029  Score=42.61  Aligned_cols=32  Identities=13%  Similarity=0.126  Sum_probs=25.6

Q ss_pred             HHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           39 LLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        39 l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      .+...+.++|||||||+|..+..+++..++++
T Consensus        40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~   71 (231)
T TIGR02752        40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEG   71 (231)
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCC
Confidence            34445567999999999999999999876544

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=96.80  E-value=0.0017  Score=44.33  Aligned_cols=29  Identities=24%  Similarity=0.370  Sum_probs=23.5

Q ss_pred             HHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           39 LLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        39 l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +-+..++.+|||||||+|+.+..+++.++
T Consensus        38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~   66 (204)
T TIGR03587        38 LNRLPKIASILELGANIGMNLAALKRLLP   66 (204)
T ss_pred             HHhcCCCCcEEEEecCCCHHHHHHHHhCC
Confidence            33445667999999999999999988754

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.77  E-value=0.0026  Score=46.66  Aligned_cols=28  Identities=25%  Similarity=0.329  Sum_probs=23.4

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAIPDD   69 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al~~~   69 (71)
                      ..+..+|||||||+|+.+..+++..++.
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~  105 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEK  105 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCC
Confidence            4455799999999999999999877643

>TIGR00477 tehB tellurite resistance protein TehB

Probab=96.73  E-value=0.0017  Score=43.68  Aligned_cols=30  Identities=27%  Similarity=0.426  Sum_probs=24.6

Q ss_pred             HHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           36 LSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        36 L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +...+...++.+|||||||+|..++++|+.
T Consensus        22 l~~~~~~~~~~~vLDiGcG~G~~a~~la~~   51 (195)
T TIGR00477        22 VREAVKTVAPCKTLDLGCGQGRNSLYLSLA   51 (195)
T ss_pred             HHHHhccCCCCcEEEeCCCCCHHHHHHHHC
Confidence            334556677899999999999999999973

Part of a tellurite-reducing operon tehA and tehB

>PRK04457 spermidine synthase; Provisional

Probab=96.64  E-value=0.0056  Score=43.28  Aligned_cols=38  Identities=18%  Similarity=0.260  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           31 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        31 ~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ....++..+....+|++|||||+|.|.++.++++..|.
T Consensus        53 y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~   90 (262)
T PRK04457         53 YTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPD   90 (262)
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCC
Confidence            33444455555568899999999999999999988763

>PRK06202 hypothetical protein; Provisional

Probab=96.54  E-value=0.0019  Score=44.02  Aligned_cols=33  Identities=18%  Similarity=0.068  Sum_probs=24.9

Q ss_pred             HHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           34 QFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        34 ~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      +.+..++...++.+|||||||+|..+..+++..
T Consensus        50 ~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~   82 (232)
T PRK06202         50 RLLRPALSADRPLTLLDIGCGGGDLAIDLARWA   82 (232)
T ss_pred             HHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHH
Confidence            344444444677899999999999999988654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=96.54  E-value=0.0049  Score=41.25  Aligned_cols=43  Identities=26%  Similarity=0.354  Sum_probs=29.1

Q ss_pred             CCHHHHHHHH-HHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           28 STPDEAQFLS-MLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        28 i~~~~g~~L~-~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +..++-+.+. ......+..+|||+|||+|+.++.+|+.+++.+
T Consensus        23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~   66 (198)
T PRK00377         23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETG   66 (198)
T ss_pred             CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCC
Confidence            4444333333 233445567999999999999999998776543

>PRK08317 hypothetical protein; Provisional

Probab=96.54  E-value=0.0042  Score=40.93  Aligned_cols=36  Identities=14%  Similarity=0.075  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+.+...+...+..+|||||||+|..+..+++..++
T Consensus         8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~   43 (241)
T PRK08317          8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGP   43 (241)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCC
Confidence            344445566677789999999999999999987743

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.54  E-value=0.0037  Score=42.45  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.7

Q ss_pred             CCeEEEeccchHHHHHHHHhhCC
Q 043521           45 AKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        45 ~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +++|||||||+|+.++.+++..+
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~   68 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARP   68 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCC
Confidence            68999999999999999998655

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=96.47  E-value=0.0027  Score=40.44  Aligned_cols=27  Identities=22%  Similarity=0.290  Sum_probs=21.4

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPDD   69 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~~   69 (71)
                      .+..+|||+|||+|..+..+++.+.++
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~   28 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPG   28 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTT
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCC
Confidence            456899999999999999999655543

...

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=96.40  E-value=0.0092  Score=39.49  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=22.1

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .++++|||||||+|..+..+++..+.
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~   58 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQ   58 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCC
Confidence            45679999999999999999987653

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=96.40  E-value=0.0048  Score=41.51  Aligned_cols=37  Identities=19%  Similarity=0.321  Sum_probs=26.5

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           25 HMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        25 ~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .....+..-+.+    ...++.+|||+|||+|..++++|+.
T Consensus        15 ~~~~~~~l~~~l----~~~~~~~vLDiGcG~G~~a~~La~~   51 (197)
T PRK11207         15 LTRTHSEVLEAV----KVVKPGKTLDLGCGNGRNSLYLAAN   51 (197)
T ss_pred             CCCChHHHHHhc----ccCCCCcEEEECCCCCHHHHHHHHC
Confidence            334445433333    3456789999999999999999974

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=96.34  E-value=0.01  Score=41.66  Aligned_cols=31  Identities=6%  Similarity=0.019  Sum_probs=24.6

Q ss_pred             HHHhcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521           39 LLKLINAKNTMEIGVYTGYSLLYTALAIPDD   69 (71)
Q Consensus        39 l~~~~~~k~iLEIGT~~GySal~lA~al~~~   69 (71)
                      ++...+..+|||||||+|..+..+++..+++
T Consensus        68 ~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~   98 (261)
T PLN02233         68 WSGAKMGDRVLDLCCGSGDLAFLLSEKVGSD   98 (261)
T ss_pred             HhCCCCCCEEEEECCcCCHHHHHHHHHhCCC
Confidence            3445567799999999999999999876543

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=96.34  E-value=0.0067  Score=43.50  Aligned_cols=41  Identities=24%  Similarity=0.308  Sum_probs=28.5

Q ss_pred             CCHHHHHHHHHHH--HhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           28 STPDEAQFLSMLL--KLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        28 i~~~~g~~L~~l~--~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      -.+++-.++....  ....+++|||||||+|.-|+.+|...|+
T Consensus        92 Pr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~  134 (280)
T COG2890          92 PRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPD  134 (280)
T ss_pred             cCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcC
Confidence            3445555665532  2222227999999999999999998874

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=96.32  E-value=0.0031  Score=41.92  Aligned_cols=41  Identities=22%  Similarity=0.177  Sum_probs=27.7

Q ss_pred             CCCCCHHHHHHHHHH------HHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           25 HMLSTPDEAQFLSML------LKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        25 ~~~i~~~~g~~L~~l------~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+..+..-+++|...      -...+.++|||+|+|+|..++.+|..
T Consensus        20 vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~   66 (173)
T PF10294_consen   20 VWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKL   66 (173)
T ss_dssp             ---HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT
T ss_pred             EechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhc
Confidence            343444445555553      34678899999999999999999986

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=96.32  E-value=0.005  Score=43.93  Aligned_cols=40  Identities=15%  Similarity=0.152  Sum_probs=29.8

Q ss_pred             CCHHHHHHHHHHHHh----cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           28 STPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        28 i~~~~g~~L~~l~~~----~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+++..++...+..    .++++|||+|||+|..++.+++..+
T Consensus       101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~  144 (284)
T TIGR03533       101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP  144 (284)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC
Confidence            445566666655442    3467999999999999999998765

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14968 putative methyltransferase; Provisional

Probab=96.26  E-value=0.0074  Score=38.92  Aligned_cols=33  Identities=15%  Similarity=0.136  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..++...+...+.++|||+|||+|+.+..+++.
T Consensus        12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~   44 (188)
T PRK14968         12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN   44 (188)
T ss_pred             HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh
Confidence            455555666678889999999999999999875

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=96.26  E-value=0.0088  Score=42.25  Aligned_cols=41  Identities=15%  Similarity=-0.058  Sum_probs=30.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ..+++...+.+...+...+..+|||||||+|..|..+++..
T Consensus        24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~   64 (272)
T PRK00274         24 FLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA   64 (272)
T ss_pred             cCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC
Confidence            45666655555445555677799999999999999999864

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=96.25  E-value=0.0086  Score=40.03  Aligned_cols=31  Identities=19%  Similarity=0.107  Sum_probs=23.4

Q ss_pred             HHHHHHH--hcCCCeEEEeccchHHHHHHHHhh
Q 043521           35 FLSMLLK--LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        35 ~L~~l~~--~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ++..+..  ..+..+|||||||+|..+..+++.
T Consensus        52 ~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~   84 (230)
T PRK07580         52 VLSWLPADGDLTGLRILDAGCGVGSLSIPLARR   84 (230)
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc
Confidence            4444433  356779999999999999999864

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=96.24  E-value=0.0075  Score=42.22  Aligned_cols=40  Identities=15%  Similarity=0.004  Sum_probs=32.2

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+++...+.+...+...+.++|||||||+|..|..+++.
T Consensus        11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~   50 (258)
T PRK14896         11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR   50 (258)
T ss_pred             ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh
Confidence            4567766666666666667789999999999999999975

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=96.19  E-value=0.016  Score=38.50  Aligned_cols=25  Identities=16%  Similarity=0.133  Sum_probs=21.8

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+..+|||||||+|..+..+++..+
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~   74 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVG   74 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcC
Confidence            3457999999999999999998875

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=96.17  E-value=0.0062  Score=41.80  Aligned_cols=27  Identities=22%  Similarity=0.254  Sum_probs=23.1

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ...+.++|||||||+|..+..+++..|
T Consensus        28 ~~~~~~~vLDiGcG~G~~~~~la~~~~   54 (258)
T PRK01683         28 PLENPRYVVDLGCGPGNSTELLVERWP   54 (258)
T ss_pred             CCcCCCEEEEEcccCCHHHHHHHHHCC
Confidence            345678999999999999999998765

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=96.16  E-value=0.0054  Score=41.08  Aligned_cols=26  Identities=35%  Similarity=0.317  Sum_probs=22.7

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+..+|||||||+|..+..+|+..|+
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p~   40 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNPD   40 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCCC
Confidence            46679999999999999999988764

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=96.14  E-value=0.011  Score=41.18  Aligned_cols=42  Identities=14%  Similarity=0.014  Sum_probs=30.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+++...+-+-..+...+.++|||||+|+|..+..+++..+
T Consensus        11 fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~   52 (253)
T TIGR00755        11 FLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK   52 (253)
T ss_pred             cCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC
Confidence            345555544444444556778999999999999999988653

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=96.12  E-value=0.014  Score=39.45  Aligned_cols=39  Identities=23%  Similarity=0.388  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHhc--CCCeEEEeccchHHHHHHHHhhCCC
Q 043521           30 PDEAQFLSMLLKLI--NAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        30 ~~~g~~L~~l~~~~--~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +++-.++..+....  ++.+|||+|||+|..++.+++..+.
T Consensus        71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~  111 (251)
T TIGR03534        71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPD  111 (251)
T ss_pred             CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCC
Confidence            34445555555443  4558999999999999999987653

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=96.11  E-value=0.013  Score=38.51  Aligned_cols=30  Identities=20%  Similarity=0.356  Sum_probs=24.7

Q ss_pred             HHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           39 LLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        39 l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ++...++.+|||+|||.|..+..+++..++
T Consensus        34 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~   63 (223)
T TIGR01934        34 LIGVFKGQKVLDVACGTGDLAIELAKSAPD   63 (223)
T ss_pred             HhccCCCCeEEEeCCCCChhHHHHHHhcCC
Confidence            333447789999999999999999988764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=96.10  E-value=0.0077  Score=41.16  Aligned_cols=28  Identities=21%  Similarity=0.300  Sum_probs=23.4

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      .+..+|||||||+|..+..+++..++.+
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~   77 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKG   77 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCc
Confidence            4566899999999999999998876543

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=96.09  E-value=0.0095  Score=37.12  Aligned_cols=33  Identities=36%  Similarity=0.352  Sum_probs=25.4

Q ss_pred             HHHHHHHHH-hcCCCeEEEeccchHHHHHHHHhh
Q 043521           33 AQFLSMLLK-LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        33 g~~L~~l~~-~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+++..+.. ..+.++|||||||.|..+..|++.
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~   43 (161)
T PF13489_consen   10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR   43 (161)
T ss_dssp             HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT
T ss_pred             HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh
Confidence            345555554 677889999999999988888653

...

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=95.98  E-value=0.0058  Score=45.83  Aligned_cols=47  Identities=9%  Similarity=0.080  Sum_probs=35.9

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +...+-++...++..++...+.++|||+|||+|..++++++.++++|
T Consensus       230 G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~  276 (444)
T PRK14902        230 GLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTG  276 (444)
T ss_pred             ceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCC
Confidence            33444555567777777777778999999999999999999875444

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.90  E-value=0.011  Score=40.90  Aligned_cols=23  Identities=13%  Similarity=0.047  Sum_probs=20.3

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .++.+|||||||+|+.+.++++.
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~   65 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL   65 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc
Confidence            45679999999999999999874

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=95.84  E-value=0.012  Score=40.35  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=22.7

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHh
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~   64 (71)
                      ++.+...+...++.+|||||||+|..+..+++
T Consensus        31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~   62 (251)
T PRK10258         31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRE   62 (251)
T ss_pred             HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHH
Confidence            33333333444678999999999998888765

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=95.81  E-value=0.015  Score=40.75  Aligned_cols=25  Identities=32%  Similarity=0.446  Sum_probs=21.5

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +..+|||||||+|+.+..+++..++
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~  109 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPE  109 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhccc
Confidence            4568999999999999999987764

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=95.81  E-value=0.015  Score=37.19  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=28.5

Q ss_pred             HHHHHHHHHh----cCCCeEEEeccchHHHHHHHHhhC
Q 043521           33 AQFLSMLLKL----INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        33 g~~L~~l~~~----~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .+++..++..    .++..|+|+|+|.||.+..++..+
T Consensus        10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l   47 (141)
T PF13679_consen   10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLL   47 (141)
T ss_pred             HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHH
Confidence            4666666666    889999999999999999999843

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=95.78  E-value=0.0096  Score=42.16  Aligned_cols=24  Identities=25%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHh
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~   64 (71)
                      ...++.+|||||||+|..++++|+
T Consensus       117 ~~~~~~~vLDlGcG~G~~~~~la~  140 (287)
T PRK12335        117 QTVKPGKALDLGCGQGRNSLYLAL  140 (287)
T ss_pred             hccCCCCEEEeCCCCCHHHHHHHH
Confidence            446788999999999999999987

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=95.76  E-value=0.0097  Score=41.59  Aligned_cols=35  Identities=23%  Similarity=0.209  Sum_probs=22.7

Q ss_pred             HHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           36 LSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        36 L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +..++...++.+|||+|||+|-.+..+++..+++|
T Consensus        39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~   73 (233)
T PF01209_consen   39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNG   73 (233)
T ss_dssp             HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---
T ss_pred             HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCcc
Confidence            33344566778999999999999999999887765

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=95.74  E-value=0.025  Score=39.25  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=24.8

Q ss_pred             HHHHHHHHHH-hcCCCeEEEeccchHHHHHHHHhh
Q 043521           32 EAQFLSMLLK-LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        32 ~g~~L~~l~~-~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +...+..+.+ ..+.++|||||||+|+.++.+++.
T Consensus       106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~  140 (250)
T PRK00517        106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL  140 (250)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc
Confidence            3444555544 347789999999999999987753

>PRK04266 fibrillarin; Provisional

Probab=95.71  E-value=0.012  Score=41.01  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=26.9

Q ss_pred             HHHHHHH--HHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           33 AQFLSML--LKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        33 g~~L~~l--~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..++..+  +...+-.+|||+|||+|+.++.+++..+
T Consensus        59 ~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~   95 (226)
T PRK04266         59 AAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE   95 (226)
T ss_pred             HHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC
Confidence            4455444  4445666999999999999999999876

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=95.66  E-value=0.011  Score=40.77  Aligned_cols=27  Identities=22%  Similarity=0.273  Sum_probs=22.9

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ...++.+|||||||+|..+..+++..|
T Consensus        26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p   52 (255)
T PRK14103         26 GAERARRVVDLGCGPGNLTRYLARRWP   52 (255)
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHCC
Confidence            345678999999999999999998764

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=95.65  E-value=0.011  Score=44.56  Aligned_cols=47  Identities=15%  Similarity=0.175  Sum_probs=36.1

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +...+-++..+++..++...+..+|||+|||+|..|+.+|+.++++|
T Consensus       217 G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g  263 (431)
T PRK14903        217 GLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQG  263 (431)
T ss_pred             CeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCC
Confidence            33344445566777777777778999999999999999999887655

>TIGR00438 rrmJ cell division protein FtsJ

Probab=95.64  E-value=0.015  Score=38.50  Aligned_cols=35  Identities=6%  Similarity=0.041  Sum_probs=25.5

Q ss_pred             HHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521           35 FLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDD   69 (71)
Q Consensus        35 ~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~   69 (71)
                      +...+....+-.+|||||||+|..+..+++...++
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~   57 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGK   57 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCC
Confidence            33334444666799999999999999888776443

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.63  E-value=0.02  Score=39.38  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=22.8

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..++.+|||+|||+|..++.+++..+
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~  131 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERP  131 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCC
Confidence            45677999999999999999998875

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=95.61  E-value=0.024  Score=43.66  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=21.0

Q ss_pred             CCeEEEeccchHHHHHHHHhhCCC
Q 043521           45 AKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        45 ~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +.+|||||||+|..++.++...|.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~  162 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPN  162 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCC
Confidence            468999999999999999987653

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=95.60  E-value=0.016  Score=42.58  Aligned_cols=30  Identities=27%  Similarity=0.379  Sum_probs=25.7

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHh
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~   64 (71)
                      -++|..+.+  ++++|||+|||+|..|+..++
T Consensus       153 L~~Le~~~~--~g~~vlDvGcGSGILaIAa~k  182 (300)
T COG2264         153 LEALEKLLK--KGKTVLDVGCGSGILAIAAAK  182 (300)
T ss_pred             HHHHHHhhc--CCCEEEEecCChhHHHHHHHH
Confidence            366777766  899999999999999999876

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=95.59  E-value=0.017  Score=42.06  Aligned_cols=25  Identities=16%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhh
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+.++|||||||+|+.+..|+..
T Consensus       119 ~~l~g~~VLDIGCG~G~~~~~la~~  143 (322)
T PRK15068        119 SPLKGRTVLDVGCGNGYHMWRMLGA  143 (322)
T ss_pred             CCCCCCEEEEeccCCcHHHHHHHHc
Confidence            3356689999999999999999875

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=95.52  E-value=0.015  Score=40.24  Aligned_cols=24  Identities=17%  Similarity=0.202  Sum_probs=20.5

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .+..+|||||||+|..+..+++.+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~   78 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNI   78 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhc
Confidence            355689999999999999998854

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=95.49  E-value=0.012  Score=39.35  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=19.7

Q ss_pred             CeEEEeccchHHHHHHHHhhCC
Q 043521           46 KNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        46 k~iLEIGT~~GySal~lA~al~   67 (71)
                      ++|||||||+|..+..+++..+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~   22 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP   22 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC
Confidence            5899999999999999998764

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=95.46  E-value=0.013  Score=44.16  Aligned_cols=48  Identities=10%  Similarity=0.131  Sum_probs=33.4

Q ss_pred             CcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           23 RNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        23 ~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      .+...+-++...+...++...+.++|||+|||+|..|+++++.++++|
T Consensus       229 ~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~  276 (445)
T PRK14904        229 LGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRG  276 (445)
T ss_pred             CcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCc
Confidence            344444444445555555555557999999999999999999876544

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=95.45  E-value=0.02  Score=38.61  Aligned_cols=37  Identities=14%  Similarity=0.095  Sum_probs=29.0

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           29 TPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        29 ~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+..-+++...+...+..+|||||||+|..+..+++.
T Consensus        33 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~   69 (233)
T PRK05134         33 NPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL   69 (233)
T ss_pred             hHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc
Confidence            3344567777776777889999999999999888764

>TIGR00536 hemK_fam HemK family putative methylases

Probab=95.43  E-value=0.038  Score=39.14  Aligned_cols=39  Identities=21%  Similarity=0.363  Sum_probs=27.5

Q ss_pred             CHHHHHHHHHHHHh---cCC-CeEEEeccchHHHHHHHHhhCC
Q 043521           29 TPDEAQFLSMLLKL---INA-KNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        29 ~~~~g~~L~~l~~~---~~~-k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+++..++......   .++ .+|||+|||+|..++.++...+
T Consensus        95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~  137 (284)
T TIGR00536        95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP  137 (284)
T ss_pred             CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC
Confidence            34445555554322   233 6899999999999999998765

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=95.38  E-value=0.033  Score=38.21  Aligned_cols=38  Identities=11%  Similarity=-0.010  Sum_probs=28.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHH
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTA   63 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA   63 (71)
                      |..+.-...++..+....+..+|||+|||+|..++.++
T Consensus        35 p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~l   72 (199)
T PRK10909         35 PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEAL   72 (199)
T ss_pred             cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHH
Confidence            44444445577777666667899999999999999643

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.37  E-value=0.036  Score=40.10  Aligned_cols=40  Identities=13%  Similarity=0.127  Sum_probs=27.7

Q ss_pred             CCHHHHHHHHHHHHh----cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           28 STPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        28 i~~~~g~~L~~l~~~----~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+++..++...+..    .++++|||+|||+|..++.+++..|
T Consensus       113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p  156 (307)
T PRK11805        113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP  156 (307)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC
Confidence            334455555544331    2237899999999999999998765

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=95.35  E-value=0.022  Score=38.38  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=20.6

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhh
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+.++|||||||+|..+.++++.
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~   76 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR   76 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC
Confidence            345789999999999999999864

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=95.28  E-value=0.042  Score=40.96  Aligned_cols=39  Identities=15%  Similarity=0.113  Sum_probs=28.0

Q ss_pred             CCHHHHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhhC
Q 043521           28 STPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        28 i~~~~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ....+.+-+..+++.   .+..+|||||||+|..+..+++..
T Consensus       148 L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~  189 (383)
T PRK11705        148 LEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY  189 (383)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC
Confidence            344444555555554   445699999999999999998754

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=95.24  E-value=0.02  Score=42.94  Aligned_cols=35  Identities=17%  Similarity=0.103  Sum_probs=25.4

Q ss_pred             HHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           34 QFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        34 ~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ++|-..+......+|||+|||+|..++++++..|.
T Consensus       218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~  252 (378)
T PRK15001        218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQ  252 (378)
T ss_pred             HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCC
Confidence            44433333333469999999999999999987653

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=95.23  E-value=0.031  Score=39.65  Aligned_cols=29  Identities=21%  Similarity=0.188  Sum_probs=24.4

Q ss_pred             HHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           40 LKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        40 ~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ++..+.++|||||||+|..++.+++..|.
T Consensus       145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~  173 (306)
T TIGR02716       145 AKLDGVKKMIDVGGGIGDISAAMLKHFPE  173 (306)
T ss_pred             cCCCCCCEEEEeCCchhHHHHHHHHHCCC
Confidence            34456789999999999999999998764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00740 methyltransferase, putative

Probab=95.21  E-value=0.05  Score=37.12  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.7

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +..+|||||||+|..+..+++.++
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~   76 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNIN   76 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcC
Confidence            556899999999999999998753

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02244 tocopherol O-methyltransferase

Probab=95.12  E-value=0.04  Score=40.09  Aligned_cols=35  Identities=20%  Similarity=0.218  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHh--------cCCCeEEEeccchHHHHHHHHhhC
Q 043521           32 EAQFLSMLLKL--------INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        32 ~g~~L~~l~~~--------~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      +-+++..+++.        .++++|||||||+|..+..+++..
T Consensus        98 q~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~  140 (340)
T PLN02244         98 QIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY  140 (340)
T ss_pred             HHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc
Confidence            34555555543        356799999999999999999854

>PRK05785 hypothetical protein; Provisional

Probab=95.06  E-value=0.035  Score=38.27  Aligned_cols=33  Identities=12%  Similarity=0.146  Sum_probs=24.4

Q ss_pred             HHHHHHHHh-cCCCeEEEeccchHHHHHHHHhhC
Q 043521           34 QFLSMLLKL-INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        34 ~~L~~l~~~-~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      +++..+... .++.+|||||||+|..+..+++..
T Consensus        40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~   73 (226)
T PRK05785         40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF   73 (226)
T ss_pred             HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc
Confidence            344444442 357899999999999999988753

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=95.06  E-value=0.023  Score=42.47  Aligned_cols=38  Identities=16%  Similarity=0.120  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           30 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        30 ~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ++...++...+...+..+|||+|||+|..|+.+++.++
T Consensus       224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~  261 (426)
T TIGR00563       224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP  261 (426)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC
Confidence            34456666666666678999999999999999999886

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=95.05  E-value=0.028  Score=39.57  Aligned_cols=38  Identities=8%  Similarity=0.153  Sum_probs=28.5

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      ..+...++...+..+|||+|+++|.-|+.+|+.+++.|
T Consensus        60 s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g   97 (264)
T TIGR00446        60 SMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEG   97 (264)
T ss_pred             HHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCC
Confidence            44444444445557899999999999999999887654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=95.03  E-value=0.035  Score=38.84  Aligned_cols=36  Identities=28%  Similarity=0.407  Sum_probs=26.5

Q ss_pred             HHHHHHHHHhcCC-C-eEEEeccchHHHHHHHHhhCCC
Q 043521           33 AQFLSMLLKLINA-K-NTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        33 g~~L~~l~~~~~~-k-~iLEIGT~~GySal~lA~al~~   68 (71)
                      .-++..|.+..+. . +|||||+|+|--+.++|+.+|.
T Consensus        12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~   49 (204)
T PF06080_consen   12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPH   49 (204)
T ss_pred             hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCC
Confidence            3444455444332 2 5999999999999999999984

The function of this family is unknown.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=94.93  E-value=0.023  Score=42.66  Aligned_cols=41  Identities=20%  Similarity=0.153  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           30 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        30 ~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +...+++..++...+..+|||+|||+|.-|+.+++.++++|
T Consensus       238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g  278 (434)
T PRK14901        238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQG  278 (434)
T ss_pred             CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCc
Confidence            34455666666656668999999999999999999877654

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=94.85  E-value=0.033  Score=41.11  Aligned_cols=39  Identities=18%  Similarity=0.155  Sum_probs=31.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ++..+--++..|-....- +|||+|||.|+.++++|+..|
T Consensus       143 lD~GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p  181 (300)
T COG2813         143 LDKGSRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP  181 (300)
T ss_pred             cChHHHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC
Confidence            555555666666666555 999999999999999999887

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.80  E-value=0.031  Score=39.34  Aligned_cols=29  Identities=28%  Similarity=0.243  Sum_probs=24.7

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALAIPDD   69 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~al~~~   69 (71)
                      +..+|+-++|||||+|+-+-.+++.+.++
T Consensus        40 ~~~~~~i~lEIG~GSGvvstfL~~~i~~~   68 (209)
T KOG3191|consen   40 KGHNPEICLEIGCGSGVVSTFLASVIGPQ   68 (209)
T ss_pred             hhcCceeEEEecCCcchHHHHHHHhcCCC
Confidence            34559999999999999999999988754

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=94.79  E-value=0.069  Score=37.98  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHh-cCCCeEEEeccchHHHHHHHHh
Q 043521           32 EAQFLSMLLKL-INAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        32 ~g~~L~~l~~~-~~~k~iLEIGT~~GySal~lA~   64 (71)
                      +.-.+..+-+. .+.++|||+|||+|+.++.+++
T Consensus       146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~  179 (288)
T TIGR00406       146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALK  179 (288)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHH
Confidence            33334444332 3557999999999999998876

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=94.78  E-value=0.081  Score=38.69  Aligned_cols=45  Identities=18%  Similarity=0.177  Sum_probs=33.9

Q ss_pred             cCcCCCCCHHHHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhhC
Q 043521           22 RRNHMLSTPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        22 ~~~~~~i~~~~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      +.+.+..+.+|-+-+..++..   .+-.++||||||-|..++++|+.-
T Consensus        47 ~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y   94 (283)
T COG2230          47 EDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY   94 (283)
T ss_pred             CCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc
Confidence            445566777776555555554   556699999999999999999875

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=94.73  E-value=0.053  Score=37.35  Aligned_cols=22  Identities=9%  Similarity=-0.076  Sum_probs=19.4

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +..+||++|||.|..++|||+.
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~   55 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ   55 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC
Confidence            4469999999999999999963

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=94.71  E-value=0.069  Score=35.56  Aligned_cols=37  Identities=11%  Similarity=0.126  Sum_probs=28.1

Q ss_pred             CHHHHHHHHHHHHh----cCCCeEEEeccchHHHHHHHHhh
Q 043521           29 TPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        29 ~~~~g~~L~~l~~~----~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+..-+++...+..    .++.+||||||++|+.+..+++.
T Consensus        26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~   66 (224)
T TIGR01983        26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL   66 (224)
T ss_pred             hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc
Confidence            44455677766664    34789999999999999988764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR03438 probable methyltransferase

Probab=94.68  E-value=0.092  Score=37.57  Aligned_cols=39  Identities=21%  Similarity=0.093  Sum_probs=29.3

Q ss_pred             CHHHHHHHHHHHHhc-----CCCeEEEeccchHHHHHHHHhhCC
Q 043521           29 TPDEAQFLSMLLKLI-----NAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        29 ~~~~g~~L~~l~~~~-----~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+.+-++|...++..     ++.+|||+|||+|.-+..++++++
T Consensus        43 tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~   86 (301)
T TIGR03438        43 TRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALR   86 (301)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhc
Confidence            444556666555532     457999999999999999998875

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=94.66  E-value=0.028  Score=39.00  Aligned_cols=30  Identities=17%  Similarity=0.373  Sum_probs=23.8

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      ...+.++|||||||+|..++.+++..++++
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~  103 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTG  103 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCC
Confidence            345667999999999999998887766543

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=94.64  E-value=0.02  Score=42.47  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=20.7

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +..+|||||||+|..++.+++..+
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~  136 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVD  136 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCC
Confidence            456999999999999999988764

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=94.64  E-value=0.047  Score=41.40  Aligned_cols=26  Identities=38%  Similarity=0.497  Sum_probs=22.5

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ...+.+||||||+|..++.+|+..|+
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~  146 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPN  146 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCC
Confidence            34468999999999999999998764

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=94.64  E-value=0.041  Score=35.84  Aligned_cols=23  Identities=17%  Similarity=-0.010  Sum_probs=19.8

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+..+|||||+|+|..+..+++.
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~   34 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLER   34 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhc
Confidence            34468999999999999999875

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=94.59  E-value=0.084  Score=38.20  Aligned_cols=40  Identities=18%  Similarity=0.069  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+++...+.+-..+...+..+|||||||+|..|..+++.
T Consensus        18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~   57 (294)
T PTZ00338         18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL   57 (294)
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh
Confidence            3455555544444445556678999999999999999875

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=94.50  E-value=0.033  Score=41.71  Aligned_cols=40  Identities=18%  Similarity=0.113  Sum_probs=30.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +-+....+...++...+..+|||+|||+|..++.+++..+
T Consensus       228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~  267 (427)
T PRK10901        228 VQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP  267 (427)
T ss_pred             EECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC
Confidence            4444455565666666778999999999999999998775

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=94.48  E-value=0.045  Score=38.46  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=21.2

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhh
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+..+|||||||+|..+..+++.
T Consensus        49 ~l~~~~~VLDiGcG~G~~a~~la~~   73 (263)
T PTZ00098         49 ELNENSKVLDIGSGLGGGCKYINEK   73 (263)
T ss_pred             CCCCCCEEEEEcCCCChhhHHHHhh
Confidence            4566679999999999999999864

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=94.43  E-value=0.098  Score=36.30  Aligned_cols=47  Identities=15%  Similarity=0.094  Sum_probs=32.6

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      +.|..-++...+.-...+..+-..++|||+++|.-++.+| ...+.++
T Consensus        14 ~~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~   60 (187)
T COG2242          14 GGPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGR   60 (187)
T ss_pred             CCCCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCce
Confidence            3454444445555555566667789999999999999999 4454553

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=94.34  E-value=0.091  Score=38.30  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHhcC-CCeEEEeccchHHHHHHHHh
Q 043521           30 PDEAQFLSMLLKLIN-AKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        30 ~~~g~~L~~l~~~~~-~k~iLEIGT~~GySal~lA~   64 (71)
                      +.+.--|..|-+... .++|||||||+|..++.-++
T Consensus       146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~k  181 (295)
T PF06325_consen  146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAK  181 (295)
T ss_dssp             HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHH
Confidence            344455555555544 47999999999999998775

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK04148 hypothetical protein; Provisional

Probab=94.32  E-value=0.072  Score=35.03  Aligned_cols=33  Identities=15%  Similarity=0.078  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHhcCCCeEEEeccchHH-HHHHHHh
Q 043521           32 EAQFLSMLLKLINAKNTMEIGVYTGY-SLLYTAL   64 (71)
Q Consensus        32 ~g~~L~~l~~~~~~k~iLEIGT~~Gy-Sal~lA~   64 (71)
                      -++++.......+.++|||||+|.|. -+..|++
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~   37 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKE   37 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHH
Confidence            35555555555566889999999997 5656664

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=94.32  E-value=0.069  Score=35.44  Aligned_cols=23  Identities=13%  Similarity=0.111  Sum_probs=19.3

Q ss_pred             CCCeEEEeccchHHHHHHHHhhC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al   66 (71)
                      +..+|||||||+|..+..+++..
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~   35 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEK   35 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcc
Confidence            45699999999999999887643

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=94.12  E-value=0.053  Score=37.42  Aligned_cols=32  Identities=22%  Similarity=0.435  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+++.. +...++.++|++|||.|-.|+++|+.
T Consensus        20 s~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~   51 (192)
T PF03848_consen   20 SEVLEA-VPLLKPGKALDLGCGEGRNALYLASQ   51 (192)
T ss_dssp             HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHT
T ss_pred             HHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHC
Confidence            444443 56778999999999999999999973

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK00811 spermidine synthase; Provisional

Probab=94.07  E-value=0.053  Score=38.68  Aligned_cols=23  Identities=26%  Similarity=0.111  Sum_probs=20.8

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+|++||+||+|.|..+.++++.
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~   97 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKH   97 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcC
Confidence            57899999999999999999875

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=94.06  E-value=0.069  Score=39.33  Aligned_cols=39  Identities=18%  Similarity=0.141  Sum_probs=26.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ++..+..++..+ ......+|||+|||+|+.++.+++..|
T Consensus       181 lD~gt~lLl~~l-~~~~~g~VLDlGCG~G~ls~~la~~~p  219 (342)
T PRK09489        181 LDVGSQLLLSTL-TPHTKGKVLDVGCGAGVLSAVLARHSP  219 (342)
T ss_pred             CCHHHHHHHHhc-cccCCCeEEEeccCcCHHHHHHHHhCC
Confidence            333333444434 334456899999999999999998755

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=93.88  E-value=0.091  Score=37.38  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=27.9

Q ss_pred             HHHHHHHHHhc---CCCeEEEeccchHHHHHHHHhhCC
Q 043521           33 AQFLSMLLKLI---NAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        33 g~~L~~l~~~~---~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      -.+-..++...   ++.+|||||||||-.|+.+++..+
T Consensus        37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g   74 (238)
T COG2226          37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG   74 (238)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC
Confidence            44555555554   578999999999999999999876

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=93.85  E-value=0.11  Score=38.79  Aligned_cols=42  Identities=12%  Similarity=0.359  Sum_probs=31.9

Q ss_pred             CCCHHHHHHHHHHHHh------cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           27 LSTPDEAQFLSMLLKL------INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~------~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +--+|+=++..+.+..      .++..++|+|||+|..++.|+..+|.
T Consensus       125 IPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~  172 (328)
T KOG2904|consen  125 IPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQ  172 (328)
T ss_pred             ecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCC
Confidence            3456666666666554      23447999999999999999999984

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=93.76  E-value=0.11  Score=36.55  Aligned_cols=23  Identities=13%  Similarity=-0.013  Sum_probs=20.2

Q ss_pred             CCeEEEeccchHHHHHHHHhhCC
Q 043521           45 AKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        45 ~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +.+|||+|||+|..++.+++..+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~  109 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD  109 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC
Confidence            45899999999999999998765

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=93.75  E-value=0.069  Score=38.12  Aligned_cols=40  Identities=23%  Similarity=0.225  Sum_probs=34.6

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           29 TPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        29 ~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .|..--.+++|+-..+|..|+|+|+..|-|++|.|.-+-.
T Consensus        54 ~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s   93 (237)
T COG3510          54 SPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMIS   93 (237)
T ss_pred             CHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHh
Confidence            4555788999999999999999999999999999975543

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=93.71  E-value=0.051  Score=39.31  Aligned_cols=31  Identities=23%  Similarity=0.271  Sum_probs=26.8

Q ss_pred             HHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           38 MLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        38 ~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ..+-..+|++|+|+|||.|-||-.+++.-|.
T Consensus        24 a~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~   54 (257)
T COG4106          24 ARVPLERPRRVVDLGCGPGNSTELLARRWPD   54 (257)
T ss_pred             hhCCccccceeeecCCCCCHHHHHHHHhCCC
Confidence            4455678999999999999999999998774

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=93.70  E-value=0.084  Score=37.17  Aligned_cols=29  Identities=31%  Similarity=0.230  Sum_probs=24.0

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALAIPDD   69 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~al~~~   69 (71)
                      .......+||||+|.|-+.+.||..-|+.
T Consensus        45 ~~~~~pi~lEIGfG~G~~l~~~A~~nP~~   73 (227)
T COG0220          45 GNNNAPIVLEIGFGMGEFLVEMAKKNPEK   73 (227)
T ss_pred             CCCCCcEEEEECCCCCHHHHHHHHHCCCC
Confidence            33344689999999999999999998864

>TIGR00452 methyltransferase, putative

Probab=93.63  E-value=0.061  Score=39.37  Aligned_cols=23  Identities=13%  Similarity=0.391  Sum_probs=19.7

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+.++|||||||+|+.+..++..
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~  142 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGH  142 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHc
Confidence            45589999999999999888764

Known examples to date are restricted to the proteobacteria.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=93.61  E-value=0.059  Score=33.51  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=18.6

Q ss_pred             eEEEeccchHHHHHHHHhhCC
Q 043521           47 NTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        47 ~iLEIGT~~GySal~lA~al~   67 (71)
                      .+||||++.|+.++++++..+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~   21 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGA   21 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCC
Confidence            479999999999999998755

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=93.42  E-value=0.064  Score=39.34  Aligned_cols=21  Identities=19%  Similarity=0.066  Sum_probs=18.3

Q ss_pred             CCCeEEEeccchHHHHHHHHh
Q 043521           44 NAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~   64 (71)
                      +..+|||||||+|+.+..+++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~  151 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLAR  151 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHH
Confidence            345899999999999999886

>PRK06922 hypothetical protein; Provisional

Probab=93.35  E-value=0.086  Score=42.63  Aligned_cols=33  Identities=15%  Similarity=0.175  Sum_probs=26.3

Q ss_pred             HHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           35 FLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        35 ~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +...+....+..+|||||||+|..+..+++..|
T Consensus       409 ~k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P  441 (677)
T PRK06922        409 DKRIILDYIKGDTIVDVGAGGGVMLDMIEEETE  441 (677)
T ss_pred             HHHHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC
Confidence            334455666788999999999999999988765

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=93.35  E-value=0.059  Score=31.98  Aligned_cols=19  Identities=21%  Similarity=0.181  Sum_probs=16.0

Q ss_pred             EEEeccchHHHHHHHHhhC
Q 043521           48 TMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        48 iLEIGT~~GySal~lA~al   66 (71)
                      |||+|||+|-.+..+++..
T Consensus         1 ILDlgcG~G~~~~~l~~~~   19 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRF   19 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS
T ss_pred             CEEeecCCcHHHHHHHHHh
Confidence            7999999999999999876

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=93.31  E-value=0.22  Score=38.31  Aligned_cols=39  Identities=18%  Similarity=0.319  Sum_probs=27.5

Q ss_pred             CHHHHHHHHHHHHh-cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           29 TPDEAQFLSMLLKL-INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        29 ~~~~g~~L~~l~~~-~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+++-.++..+... .+..+|||||||+|..++.+++..+
T Consensus       235 RpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p  274 (423)
T PRK14966        235 RPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP  274 (423)
T ss_pred             CccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC
Confidence            34444555555443 3446899999999999999987654

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=93.26  E-value=0.12  Score=37.15  Aligned_cols=40  Identities=15%  Similarity=0.069  Sum_probs=27.5

Q ss_pred             CCCCHHHHHHHHH----HHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           26 MLSTPDEAQFLSM----LLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        26 ~~i~~~~g~~L~~----l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .++.+...+-+..    ++...++++|||+|||+|..++.+|+.
T Consensus       151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~  194 (315)
T PRK03522        151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP  194 (315)
T ss_pred             eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc
Confidence            3455555444333    233346789999999999999999973

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=93.21  E-value=0.12  Score=38.72  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=21.3

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ..+..+|||||||+|..++.+++..
T Consensus       264 ~~~~~~vLDiGcG~G~~~~~la~~~  288 (475)
T PLN02336        264 LKPGQKVLDVGCGIGGGDFYMAENF  288 (475)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhc
Confidence            4556799999999999999998754

>TIGR00417 speE spermidine synthase

Probab=93.18  E-value=0.1  Score=36.68  Aligned_cols=24  Identities=25%  Similarity=0.066  Sum_probs=20.6

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .+|++|||||+|.|..+..+++..
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~   94 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHK   94 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCC
Confidence            578899999999999988887654

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=93.10  E-value=0.073  Score=38.08  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=26.0

Q ss_pred             CCHHHHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhh
Q 043521           28 STPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        28 i~~~~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +...+-+-+..++..   .+-.+|||||||-|-.++++|+.
T Consensus        43 Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~   83 (273)
T PF02353_consen   43 LEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAER   83 (273)
T ss_dssp             HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH
Confidence            344455555555554   45559999999999999999986

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.09  E-value=0.19  Score=36.10  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=28.8

Q ss_pred             HHHHHHHHHH-hcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           32 EAQFLSMLLK-LINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        32 ~g~~L~~l~~-~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      -...+..|-- +.+--+.|+||+|+||.+-++++-+..+|
T Consensus        69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g  108 (237)
T KOG1661|consen   69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATG  108 (237)
T ss_pred             HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCC
Confidence            3556666653 44455999999999999999996665554

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=93.01  E-value=0.31  Score=33.63  Aligned_cols=21  Identities=10%  Similarity=0.014  Sum_probs=18.8

Q ss_pred             CCCeEEEeccchHHHHHHHHh
Q 043521           44 NAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~   64 (71)
                      +..+||++|||.|..++|||+
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~   57 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAE   57 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHh
Confidence            346999999999999999996

>PRK01581 speE spermidine synthase; Validated

Probab=92.94  E-value=0.12  Score=39.14  Aligned_cols=26  Identities=23%  Similarity=0.212  Sum_probs=21.8

Q ss_pred             HHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           40 LKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        40 ~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +...+|++||+||+|.|+++..+++.
T Consensus       146 ~~h~~PkrVLIIGgGdG~tlrelLk~  171 (374)
T PRK01581        146 SKVIDPKRVLILGGGDGLALREVLKY  171 (374)
T ss_pred             HhCCCCCEEEEECCCHHHHHHHHHhc
Confidence            34588999999999999988877764

>PTZ00146 fibrillarin; Provisional

Probab=92.91  E-value=0.088  Score=38.60  Aligned_cols=27  Identities=11%  Similarity=0.238  Sum_probs=23.4

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +-.+|||+||++|+.+..+|..+.++|
T Consensus       132 pG~~VLDLGaG~G~~t~~lAdiVG~~G  158 (293)
T PTZ00146        132 PGSKVLYLGAASGTTVSHVSDLVGPEG  158 (293)
T ss_pred             CCCEEEEeCCcCCHHHHHHHHHhCCCC
Confidence            445899999999999999999887665

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=92.77  E-value=0.13  Score=38.16  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           32 EAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        32 ~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      ..+++-++....+-.+|+|-|||.|.-+.++++++.|.|+
T Consensus        93 Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGh  132 (314)
T KOG2915|consen   93 DIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGH  132 (314)
T ss_pred             cHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcc
Confidence            3566777777788889999999999999999999998875

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=92.73  E-value=0.1  Score=35.49  Aligned_cols=22  Identities=36%  Similarity=0.344  Sum_probs=19.5

Q ss_pred             eEEEeccchHHHHHHHHhhCCC
Q 043521           47 NTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        47 ~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+||||||.|-..+.+|..-|+
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd   41 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPD   41 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTT
T ss_pred             eEEEecCCCCHHHHHHHHHCCC
Confidence            7899999999999999998875

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=92.72  E-value=0.25  Score=36.49  Aligned_cols=24  Identities=13%  Similarity=0.072  Sum_probs=19.1

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +..++||||||+|.....++...+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~  137 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY  137 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC
Confidence            357899999999988888776544

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=92.59  E-value=0.086  Score=29.06  Aligned_cols=18  Identities=28%  Similarity=0.290  Sum_probs=16.3

Q ss_pred             eEEEeccchHHHHHHHHh
Q 043521           47 NTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        47 ~iLEIGT~~GySal~lA~   64 (71)
                      +++||||+.|..+..+++
T Consensus         1 ~ildig~G~G~~~~~~~~   18 (107)
T cd02440           1 RVLDLGCGTGALALALAS   18 (107)
T ss_pred             CeEEEcCCccHHHHHHhc
Confidence            589999999999998887

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PLN02672 methionine S-methyltransferase

Probab=92.56  E-value=0.27  Score=41.65  Aligned_cols=23  Identities=22%  Similarity=0.206  Sum_probs=20.7

Q ss_pred             CCeEEEeccchHHHHHHHHhhCC
Q 043521           45 AKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        45 ~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .++|||+|||+|+.++.+++..+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~  141 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWL  141 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCC
Confidence            36899999999999999998776

>PRK14967 putative methyltransferase; Provisional

Probab=92.53  E-value=0.32  Score=33.03  Aligned_cols=21  Identities=14%  Similarity=0.196  Sum_probs=18.6

Q ss_pred             CCeEEEeccchHHHHHHHHhh
Q 043521           45 AKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        45 ~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+|||+|||+|..++.+++.
T Consensus        37 ~~~vLDlGcG~G~~~~~la~~   57 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAAA   57 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHHc
Confidence            369999999999999999874

>TIGR00478 tly hemolysin TlyA family protein

Probab=92.41  E-value=0.1  Score=36.61  Aligned_cols=22  Identities=18%  Similarity=0.110  Sum_probs=19.4

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +-++||||||++|+.+.++++.
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~   96 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQK   96 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHc
Confidence            4558999999999999999875

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=92.35  E-value=0.13  Score=38.43  Aligned_cols=24  Identities=21%  Similarity=0.086  Sum_probs=20.4

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhh
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+.++|||||||+|..+..+++.
T Consensus        35 ~~~~~~vLDlGcG~G~~~~~la~~   58 (475)
T PLN02336         35 PYEGKSVLELGAGIGRFTGELAKK   58 (475)
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHhh
Confidence            345578999999999999999875

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=92.23  E-value=0.43  Score=33.38  Aligned_cols=56  Identities=18%  Similarity=0.123  Sum_probs=42.0

Q ss_pred             HHHhhhhhhhhcC--cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           11 FVYFSQHIDGMRR--NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        11 ~~~~~~~~~~~~~--~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      +.+|++..+.-..  .....++..++-+...+--.+...|||+|.|+|.-|-.+.+..
T Consensus        13 ~~F~k~wi~~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~g   70 (194)
T COG3963          13 ISFFKGWIDNPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRG   70 (194)
T ss_pred             HHHHHHHhcCCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcC
Confidence            4566777765333  3456677778888888888888899999999999999866543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=92.05  E-value=0.24  Score=39.59  Aligned_cols=27  Identities=22%  Similarity=0.358  Sum_probs=23.3

Q ss_pred             HHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           39 LLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        39 l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +.+..+.++|||+||++|..++++|.+
T Consensus       533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~  559 (702)
T PRK11783        533 IGQMAKGKDFLNLFAYTGTASVHAALG  559 (702)
T ss_pred             HHHhcCCCeEEEcCCCCCHHHHHHHHC
Confidence            455567899999999999999999975

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=91.99  E-value=0.33  Score=35.55  Aligned_cols=22  Identities=23%  Similarity=0.173  Sum_probs=19.4

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +..+|||||||+|..++.+++.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~  165 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE  165 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC
Confidence            4579999999999999999863

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=91.78  E-value=0.11  Score=39.06  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=19.8

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHh
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~   64 (71)
                      +..+.++|||+||++|..++..+.
T Consensus       217 ~~~~g~rVLDlfsgtG~~~l~aa~  240 (396)
T PRK15128        217 RYVENKRVLNCFSYTGGFAVSALM  240 (396)
T ss_pred             HhcCCCeEEEeccCCCHHHHHHHh
Confidence            445678999999999999887654

>PLN02366 spermidine synthase

Probab=91.62  E-value=0.18  Score=36.80  Aligned_cols=37  Identities=24%  Similarity=0.261  Sum_probs=27.6

Q ss_pred             CHHHHHHHHHHHH-----hcCCCeEEEeccchHHHHHHHHhh
Q 043521           29 TPDEAQFLSMLLK-----LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        29 ~~~~g~~L~~l~~-----~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+++...-.++++     ..+|++||+||+|.|.++.++++.
T Consensus        71 ~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~  112 (308)
T PLN02366         71 ERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARH  112 (308)
T ss_pred             CccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhC
Confidence            3334445555554     368999999999999999999876

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=91.53  E-value=0.2  Score=36.04  Aligned_cols=33  Identities=12%  Similarity=0.173  Sum_probs=26.2

Q ss_pred             HHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhh
Q 043521           33 AQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        33 g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      -.++...++.   ..-.+|||||||.|..+.+||+.
T Consensus        45 l~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~   80 (243)
T COG2227          45 LDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL   80 (243)
T ss_pred             hhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC
Confidence            3455555555   67789999999999999999973

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=91.23  E-value=0.26  Score=36.70  Aligned_cols=23  Identities=13%  Similarity=-0.090  Sum_probs=20.1

Q ss_pred             CCCeEEEeccchHHHHHHHHhhC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al   66 (71)
                      +..+|||+|||+|..++.+|+..
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~  314 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQA  314 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhC
Confidence            45789999999999999999753

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=91.20  E-value=0.63  Score=32.67  Aligned_cols=52  Identities=13%  Similarity=0.043  Sum_probs=30.9

Q ss_pred             hhhhhhhhcCcCCCCCHHHHHHHHHHH---HhcCCCeEEEeccchHHHHHHHHhh
Q 043521           14 FSQHIDGMRRNHMLSTPDEAQFLSMLL---KLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        14 ~~~~~~~~~~~~~~i~~~~g~~L~~l~---~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .++.....+++.-...-|+.+.-.++.   ..-+.+++||+||+.|..|-.||..
T Consensus        10 ~~~la~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r   64 (201)
T PF05401_consen   10 NRELANDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR   64 (201)
T ss_dssp             HHHHTSSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG
T ss_pred             HHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh
Confidence            344444556665445555545444443   3344468999999999999999875

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=91.09  E-value=0.3  Score=36.41  Aligned_cols=31  Identities=23%  Similarity=0.207  Sum_probs=24.5

Q ss_pred             HHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           36 LSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        36 L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      +.--+....-|+||||||+.||-+..|+..=
T Consensus       107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~G  137 (315)
T PF08003_consen  107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG  137 (315)
T ss_pred             HHhhhCCcCCCEEEEecCCCcHHHHHHhhcC
Confidence            3333446778899999999999999998763

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=90.96  E-value=0.087  Score=38.29  Aligned_cols=19  Identities=21%  Similarity=0.190  Sum_probs=16.0

Q ss_pred             CCCeEEEeccchHHHHHHH
Q 043521           44 NAKNTMEIGVYTGYSLLYT   62 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~l   62 (71)
                      .+.-|||||||+|.|+-.+
T Consensus        50 ~~~~iLDIGCGsGLSg~vL   68 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVL   68 (270)
T ss_pred             CCcEEEEeccCCCcchhee
Confidence            4788999999999998544

>PHA03412 putative methyltransferase; Provisional

Probab=90.91  E-value=0.35  Score=34.70  Aligned_cols=42  Identities=5%  Similarity=0.007  Sum_probs=29.2

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +..-.++...+.+.  .......+|||+|||+|.-++.+++.++
T Consensus        31 GqFfTP~~iAr~~~--i~~~~~grVLDlG~GSG~Lalala~~~~   72 (241)
T PHA03412         31 GAFFTPIGLARDFT--IDACTSGSVVDLCAGIGGLSFAMVHMMM   72 (241)
T ss_pred             CccCCCHHHHHHHH--HhccCCCEEEEccChHHHHHHHHHHhcc
Confidence            44445555555432  2334567999999999999999988654

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=90.83  E-value=0.29  Score=36.79  Aligned_cols=40  Identities=13%  Similarity=-0.031  Sum_probs=26.8

Q ss_pred             CCCHHHHHHHH-HHHHh---cCCCeEEEeccchHHHHHHHHhhC
Q 043521           27 LSTPDEAQFLS-MLLKL---INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        27 ~i~~~~g~~L~-~l~~~---~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ++.+.+.+.+. .+...   .+..+|||+|||+|..++.+|+..
T Consensus       276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~  319 (443)
T PRK13168        276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA  319 (443)
T ss_pred             EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC
Confidence            45555544333 33332   344699999999999999998753

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=90.80  E-value=0.47  Score=34.29  Aligned_cols=32  Identities=16%  Similarity=0.077  Sum_probs=23.9

Q ss_pred             HHHHHHh---cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           36 LSMLLKL---INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        36 L~~l~~~---~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +...+..   .+..+|||||.|.|..|..|++...
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~   53 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA   53 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC
Confidence            4444444   4446799999999999999988654

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=90.48  E-value=0.2  Score=35.06  Aligned_cols=41  Identities=22%  Similarity=0.133  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ..+++...+-+-..+...+...|||||.|.|..|-.|++..
T Consensus        12 FL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~   52 (262)
T PF00398_consen   12 FLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG   52 (262)
T ss_dssp             EEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS
T ss_pred             eeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc
Confidence            34566666666666666678899999999999999998754

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=90.45  E-value=0.24  Score=29.56  Aligned_cols=21  Identities=19%  Similarity=0.123  Sum_probs=18.5

Q ss_pred             CeEEEeccchHHHHHHHHhhC
Q 043521           46 KNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        46 k~iLEIGT~~GySal~lA~al   66 (71)
                      .+|||+|||+|..++.+++..
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~   22 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG   22 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC
T ss_pred             CEEEEcCcchHHHHHHHHHHC
Confidence            479999999999999988764

...

>PHA01634 hypothetical protein

Probab=90.18  E-value=0.19  Score=33.91  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.1

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+-|+|++||.++|-|+++++..
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~   49 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLR   49 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhc
Confidence            46689999999999999998753

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=89.76  E-value=0.38  Score=29.28  Aligned_cols=16  Identities=38%  Similarity=0.652  Sum_probs=12.2

Q ss_pred             hcCCCeEEEeccchHH
Q 043521           42 LINAKNTMEIGVYTGY   57 (71)
Q Consensus        42 ~~~~k~iLEIGT~~Gy   57 (71)
                      ...||+||-||+.+||
T Consensus        36 ~~GpK~VLViGaStGy   51 (78)
T PF12242_consen   36 INGPKKVLVIGASTGY   51 (78)
T ss_dssp             -TS-SEEEEES-SSHH
T ss_pred             CCCCceEEEEecCCcc
Confidence            3788999999999998

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=89.60  E-value=0.84  Score=32.49  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=23.0

Q ss_pred             HHHHHHHH---hcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           34 QFLSMLLK---LINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        34 ~~L~~l~~---~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +.|..+.+   ..+|++|||+|+|.|.......+..+
T Consensus        20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~   56 (274)
T PF09243_consen   20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWP   56 (274)
T ss_pred             HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhc
Confidence            44444443   46899999999999976655544433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=89.52  E-value=0.23  Score=33.84  Aligned_cols=31  Identities=19%  Similarity=0.226  Sum_probs=24.3

Q ss_pred             HHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           38 MLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        38 ~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ...-..+.++|||||-|.|..+..+++.-|.
T Consensus        94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~  124 (241)
T PF00891_consen   94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPN  124 (241)
T ss_dssp             HHSTTTTSSEEEEET-TTSHHHHHHHHHSTT
T ss_pred             ccccccCccEEEeccCcchHHHHHHHHHCCC
Confidence            3334467789999999999999999998773

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=89.19  E-value=1  Score=33.27  Aligned_cols=41  Identities=17%  Similarity=0.014  Sum_probs=29.0

Q ss_pred             CCCCCHHHHHHHHHHHHh----cCCCeEEEeccchHHHHHHHHhh
Q 043521           25 HMLSTPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        25 ~~~i~~~~g~~L~~l~~~----~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..++.+...+-+...++.    .+.++|||+|||+|.-++.+|..
T Consensus       210 F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~  254 (374)
T TIGR02085       210 FFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP  254 (374)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc
Confidence            456666666555443322    45689999999999999999853

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=89.04  E-value=0.72  Score=33.27  Aligned_cols=37  Identities=19%  Similarity=0.175  Sum_probs=28.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHh
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~   64 (71)
                      +.+.....+..++...+.++|||+|||+|...+..+.
T Consensus       166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~  202 (329)
T TIGR01177       166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL  202 (329)
T ss_pred             CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH
Confidence            4566677777777666677999999999988776554

This family is found exclusively in the Archaea.

>PRK03612 spermidine synthase; Provisional

Probab=88.83  E-value=0.42  Score=36.98  Aligned_cols=23  Identities=13%  Similarity=0.105  Sum_probs=20.6

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+|++||+||+|.|..+..+++.
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~  318 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY  318 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC
Confidence            57899999999999999988864

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=88.82  E-value=0.39  Score=34.11  Aligned_cols=41  Identities=29%  Similarity=0.218  Sum_probs=33.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchH--HHHHHHHhhCCC
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTG--YSLLYTALAIPD   68 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~G--ySal~lA~al~~   68 (71)
                      ..|...+|+..|+.-.++|.|+|+.+..|  .+++.||-+-..
T Consensus        25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~   67 (218)
T PF07279_consen   25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQ   67 (218)
T ss_pred             CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHh
Confidence            35678999999999999999999987754  467887766543

The function of this family is unknown.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=88.71  E-value=0.38  Score=34.55  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=19.7

Q ss_pred             CCCeEEEeccchHHHHHHHHhhC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ++++|||+|+|+|.-++.+|...
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~  108 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL  108 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh
Confidence            78899999999999888887643

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=88.47  E-value=1.3  Score=32.66  Aligned_cols=42  Identities=10%  Similarity=-0.039  Sum_probs=28.1

Q ss_pred             CCCCCHHHHHHHH-HHHHhcC--CCeEEEeccchHHHHHHHHhhC
Q 043521           25 HMLSTPDEAQFLS-MLLKLIN--AKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        25 ~~~i~~~~g~~L~-~l~~~~~--~k~iLEIGT~~GySal~lA~al   66 (71)
                      ..++.+.+.+.|. ......+  +.+|||++||+|..++.+++..
T Consensus       175 F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~  219 (353)
T TIGR02143       175 FTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF  219 (353)
T ss_pred             cccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC
Confidence            3445565554444 3334333  4579999999999999999864

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=88.01  E-value=0.44  Score=35.89  Aligned_cols=24  Identities=29%  Similarity=0.498  Sum_probs=21.6

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhh
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +.+-|.||++|||+|..+++=|++
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akA   81 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKA   81 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHh
Confidence            678899999999999999988876

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=87.85  E-value=0.25  Score=36.34  Aligned_cols=20  Identities=15%  Similarity=0.054  Sum_probs=17.8

Q ss_pred             CeEEEeccchHHHHHHHHhh
Q 043521           46 KNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        46 k~iLEIGT~~GySal~lA~a   65 (71)
                      ++|||+|||.|..+.-||+-
T Consensus        91 ~~ilDvGCGgGLLSepLArl  110 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARL  110 (282)
T ss_pred             ceEEEeccCccccchhhHhh
Confidence            56999999999999999873

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=87.83  E-value=0.46  Score=34.86  Aligned_cols=18  Identities=17%  Similarity=0.204  Sum_probs=15.5

Q ss_pred             CCeEEEeccchHHHHHHH
Q 043521           45 AKNTMEIGVYTGYSLLYT   62 (71)
Q Consensus        45 ~k~iLEIGT~~GySal~l   62 (71)
                      -+++|++|||||.++..+
T Consensus       126 F~~~lDLGCGTGL~G~~l  143 (287)
T COG4976         126 FRRMLDLGCGTGLTGEAL  143 (287)
T ss_pred             cceeeecccCcCcccHhH
Confidence            679999999999887664

>TIGR00095 RNA methyltransferase, RsmD family

Probab=87.30  E-value=1.5  Score=29.54  Aligned_cols=34  Identities=12%  Similarity=0.067  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           32 EAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        32 ~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+...+....+-+++||++||+|.-++..++.
T Consensus        37 rea~f~~l~~~~~g~~vLDLfaGsG~lglea~sr   70 (189)
T TIGR00095        37 RELFFNILRPEIQGAHLLDVFAGSGLLGEEALSR   70 (189)
T ss_pred             HHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhC
Confidence            3456666655567789999999999999988764

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=86.68  E-value=1.6  Score=32.19  Aligned_cols=43  Identities=9%  Similarity=-0.087  Sum_probs=29.4

Q ss_pred             CCCCCHHHHHHHHHHHHh-cC--CCeEEEeccchHHHHHHHHhhCC
Q 043521           25 HMLSTPDEAQFLSMLLKL-IN--AKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        25 ~~~i~~~~g~~L~~l~~~-~~--~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..++.+.+.+-|...+.. .+  ..++||++||+|..++.+++...
T Consensus       184 F~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~  229 (362)
T PRK05031        184 FTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFR  229 (362)
T ss_pred             eeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCC
Confidence            455666665544444433 33  25799999999999999998643

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=86.56  E-value=0.76  Score=35.53  Aligned_cols=26  Identities=31%  Similarity=0.353  Sum_probs=23.0

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCCCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIPDD   69 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~~~   69 (71)
                      +...+||||||.|-+.+.+|...|+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~  372 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDA  372 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCC
Confidence            46788999999999999999998863

>PLN02823 spermine synthase

Probab=86.36  E-value=1  Score=33.33  Aligned_cols=23  Identities=17%  Similarity=0.027  Sum_probs=20.4

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+|++||.||.|.|.++.++++.
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~  124 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRH  124 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhC
Confidence            47899999999999999988774

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=85.24  E-value=1.8  Score=31.11  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           32 EAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        32 ~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +..++..+-+.   .+...++|.|+|-|..+-|++..++.
T Consensus         3 qsSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~   42 (259)
T PF05206_consen    3 QSSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQE   42 (259)
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhh
Confidence            34555655554   34458899999999999999999854

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=84.70  E-value=0.78  Score=33.76  Aligned_cols=28  Identities=21%  Similarity=0.373  Sum_probs=24.0

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ....++.+|||||..|.-|+.||+-..+
T Consensus        55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~   82 (288)
T KOG2899|consen   55 DWFEPKQALDIGCNSGFLTLSIAKDFGP   82 (288)
T ss_pred             cccCcceeEeccCCcchhHHHHHHhhcc
Confidence            3467899999999999999999987654

>PHA03411 putative methyltransferase; Provisional

Probab=84.36  E-value=1.1  Score=32.75  Aligned_cols=25  Identities=4%  Similarity=-0.082  Sum_probs=20.2

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .....+|||+|||+|..++.+++..
T Consensus        62 ~~~~grVLDLGcGsGilsl~la~r~   86 (279)
T PHA03411         62 AHCTGKVLDLCAGIGRLSFCMLHRC   86 (279)
T ss_pred             cccCCeEEEcCCCCCHHHHHHHHhC
Confidence            3445799999999999998887754

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=83.63  E-value=2.1  Score=29.61  Aligned_cols=52  Identities=19%  Similarity=0.303  Sum_probs=33.4

Q ss_pred             Hhhhhhhh-hcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           13 YFSQHIDG-MRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        13 ~~~~~~~~-~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      |.+....+ ..+..-.+.|.--+++.. ....+..+||..|||.|+-.+|||+.
T Consensus         6 W~~~w~~~~~~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~   58 (218)
T PF05724_consen    6 WEERWQEGQTPWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ   58 (218)
T ss_dssp             HHHHHHTT--TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT
T ss_pred             HHHHHhcCCCCCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC
Confidence            44444443 344445566665666665 33455569999999999999999963

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=83.62  E-value=1.6  Score=32.62  Aligned_cols=37  Identities=19%  Similarity=0.030  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           30 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        30 ~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ++.-+-+..-+...++..|||||-|||-.|..|.++-
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~   80 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG   80 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc
Confidence            4445555555666777899999999999999988753

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=83.09  E-value=0.37  Score=35.13  Aligned_cols=26  Identities=19%  Similarity=0.332  Sum_probs=20.1

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ..|.+|||||||.|-+..=+.+..++
T Consensus        70 ~~~~~ilEvGCGvGNtvfPll~~~~n   95 (264)
T KOG2361|consen   70 KSAETILEVGCGVGNTVFPLLKTSPN   95 (264)
T ss_pred             cChhhheeeccCCCcccchhhhcCCC
Confidence            34448999999999888777776654

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=81.63  E-value=2.2  Score=29.60  Aligned_cols=24  Identities=17%  Similarity=0.033  Sum_probs=19.2

Q ss_pred             CCeEEEeccchHHHHHHHHhhCCC
Q 043521           45 AKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        45 ~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +-+|+|+|.|.|.-+.-+.+.+.+
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~   42 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRK   42 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHH
Confidence            458999999999999998887764

; PDB: 4F3N_A 1ZKD_B.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=81.22  E-value=1.8  Score=30.49  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=17.1

Q ss_pred             CCCeEEEeccchHHH----HHHHHhhCC
Q 043521           44 NAKNTMEIGVYTGYS----LLYTALAIP   67 (71)
Q Consensus        44 ~~k~iLEIGT~~GyS----al~lA~al~   67 (71)
                      ++.+|+++||++|-.    |+.+++..+
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~  126 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLP  126 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhh
Confidence            456999999999964    445555444

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=80.83  E-value=1.1  Score=30.41  Aligned_cols=63  Identities=21%  Similarity=0.304  Sum_probs=34.5

Q ss_pred             hhhHHHHHHhhhhhhhhcCcCCCCCHH---HHHHHHHHHHh---cCCC-eEEEeccchHHHHHHHHhhCCC
Q 043521            5 QLFFFYFVYFSQHIDGMRRNHMLSTPD---EAQFLSMLLKL---INAK-NTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~---~g~~L~~l~~~---~~~k-~iLEIGT~~GySal~lA~al~~   68 (71)
                      +.+--|.+-..+......+-... +.+   .-.++..+.-.   .... +++|||||.|.=++-+|-..|+
T Consensus         3 ~~l~~y~~lL~~~N~~~NLt~~~-~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~   72 (184)
T PF02527_consen    3 EKLEQYLELLLEWNKKINLTSIR-DPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPD   72 (184)
T ss_dssp             HHHHHHHHHHHHHHHCSSS-S---SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHhCceeeeccCC-CHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCC
Confidence            34455555555555544443322 211   12334443332   2222 7999999999999999988775

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	71
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		2e-17
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		3e-12
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		3e-09
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		3e-08
3cbg_A	232	Functional And Structural Characterization Of A Cat		3e-08
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		2e-07
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		2e-05
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		3e-04

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/48 (83%), Positives = 43/48 (89%)
Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFLSMLLKLINAKNTMEIGVYTGYSLL TALAIP+DGK
Sbjct: 59  NIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGK 106

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
          ++M ++P   Q +S +LKL+NAK T+E+GV+TGYSLL TAL+IPDDGK
Sbjct: 50 SYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGK 97

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 21 MRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
          M   +M   P++AQF+ ML++L  AK  +E+G +TGYS L  +LA+PDDG+
Sbjct: 37 MELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQ 87

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 11 FVYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70
          F+   +    + + +M  +P+E QFL++L K+  AK  +EIG +TGYS L  A A+P+DG
Sbjct: 27 FLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDG 86
Query: 71 K 71
          K
Sbjct: 87 K 87

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 9  FYFVYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD 68
          FY     +    +    M  +P++AQFL +L+ L  AK  +EIGV+ GYS L  AL +P 
Sbjct: 37 FYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPP 96
Query: 69 DGK 71
          DG+
Sbjct: 97 DGQ 99

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70
          + P++AQ L++L+KL  AK  ++IG +TGYS +   LA+P DG
Sbjct: 48 TAPEQAQLLALLVKLXQAKKVIDIGTFTGYSAIAXGLALPKDG 90

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 21 MRRNHMLSTP------DEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
          +  NH    P      ++ QFL++L++L  AK  +EIG   GYS ++ A  +P DG+
Sbjct: 34 LENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQ 90

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
          + T ++AQ L+ L +LI AK  +++G +TGYS L  ALA+P DG+
Sbjct: 52 MMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGR 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	71
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	2e-22
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	8e-22
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	9e-22
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	2e-21
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	2e-21
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	2e-21
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	3e-21
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	4e-21
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	8e-21
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	4e-20
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	2e-19
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	7e-18
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	6e-17
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	2e-16

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score = 84.7 bits (210), Expect = 2e-22
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 24  NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFLSMLLKLINAKNTMEIGVYTGYSLL TALAIP+DGK
Sbjct: 59  NIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGK 106

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score = 83.1 bits (206), Expect = 8e-22
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query: 16 QHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
          +    + + +M  +P+E QFL++L K+  AK  +EIG +TGYS L  A A+P+DGK
Sbjct: 32 KETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGK 87

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score = 82.7 bits (205), Expect = 9e-22
 Identities = 21/48 (43%), Positives = 33/48 (68%)

Query: 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
            M + P++AQ L++L+KL+ AK  ++IG +TGYS +   LA+P DG 
Sbjct: 44 YAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGT 91

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score = 82.3 bits (204), Expect = 2e-21
 Identities = 29/51 (56%), Positives = 40/51 (78%)

Query: 21 MRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
             ++M ++P   Q +S +LKL+NAK T+E+GV+TGYSLL TAL+IPDDGK
Sbjct: 47 HPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGK 97

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score = 81.9 bits (203), Expect = 2e-21
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
             +P + +FL +L+++  A+N +EIG   GYS ++ A  +   G+
Sbjct: 40 HDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGR 85

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score = 82.3 bits (204), Expect = 2e-21
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
               ++ QFL++L++L  AK  +EIG   GYS ++ A  +P DG+
Sbjct: 45 HDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQ 90

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score = 81.6 bits (202), Expect = 3e-21
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
            M  +P++AQFL +L+ L  AK  +EIGV+ GYS L  AL +P DG+
Sbjct: 52 APMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQ 99

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score = 81.6 bits (202), Expect = 4e-21
 Identities = 23/48 (47%), Positives = 35/48 (72%)

Query: 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           +M   P++AQF+ ML++L  AK  +E+G +TGYS L  +LA+PDDG+
Sbjct: 40 ANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQ 87

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score = 80.5 bits (199), Expect = 8e-21
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
             + T ++AQ L+ L +LI AK  +++G +TGYS L  ALA+P DG+
Sbjct: 49 GDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGR 96

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score = 78.5 bits (194), Expect = 4e-20
 Identities = 9/51 (17%), Positives = 21/51 (41%)

Query: 21 MRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           +   M     + Q +  +++  +    +E+G Y GYS +  A  +    +
Sbjct: 35 QKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGAR 85

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 76.5 bits (189), Expect = 2e-19
 Identities = 7/46 (15%), Positives = 17/46 (36%)

Query: 26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           +      + L +L ++   +  +  G   G +  + A AI    +
Sbjct: 38 PIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSR 83

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score = 72.7 bits (179), Expect = 7e-18
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           +        +  L+++ N KN +EIG   GYS +  A +I DD  
Sbjct: 53 PIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFA-SISDDIH 97

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score = 70.4 bits (173), Expect = 6e-17
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD 68
           +      + L  LLK+      +EIG   GYS +  A A+P+
Sbjct: 36 PIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPE 78

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 68.9 bits (169), Expect = 2e-16
 Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 3/49 (6%)

Query: 26 MLSTPDEAQFLSMLLKLIN---AKNTMEIGVYTGYSLLYTALAIPDDGK 71
                  Q L+ L    N   +   + I    G   LY    + D+  
Sbjct: 35 PAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTT 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.22
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.21
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.15
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.13
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.04
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.03
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.96
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.96
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.93
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.92
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.83
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.82
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.82
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.55
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.41
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.38
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.32
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	97.63
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.42
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	97.31
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	97.29
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.24
3f4k_A	257	Putative methyltransferase; structural genomics, P	97.21
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.21
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	97.19
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.18
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.14
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.13
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.12
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	97.1
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.1
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.09
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	97.08
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.07
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	97.06
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.06
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.01
3lpm_A	259	Putative methyltransferase; structural genomics, p	96.99
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	96.95
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.95
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.94
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	96.94
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	96.9
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	96.89
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	96.88
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	96.88
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	96.83
2p7i_A	250	Hypothetical protein; putative methyltransferase,	96.82
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	96.78
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	96.77
3ege_A	261	Putative methyltransferase from antibiotic biosyn	96.77
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.77
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.74
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	96.73
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.71
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	96.71
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	96.67
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	96.67
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	96.66
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	96.65
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.64
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.64
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	96.63
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.62
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	96.6
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	96.59
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.58
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	96.57
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	96.57
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.56
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	96.53
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.53
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	96.52
1ws6_A	171	Methyltransferase; structural genomics, riken stru	96.52
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	96.5
2b3t_A	276	Protein methyltransferase HEMK; translation termin	96.49
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	96.49
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.48
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	96.48
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	96.48
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	96.46
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.45
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.42
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	96.42
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	96.41
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	96.41
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	96.41
1xxl_A	239	YCGJ protein; structural genomics, protein structu	96.4
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	96.4
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	96.4
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	96.38
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	96.37
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	96.37
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.37
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	96.33
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	96.32
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	96.32
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	96.32
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	96.31
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.31
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	96.3
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	96.29
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	96.28
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.27
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	96.26
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	96.25
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	96.21
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.21
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	96.19
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	96.18
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	96.16
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	96.16
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.15
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.15
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	96.14
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.14
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	96.14
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.13
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	96.13
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	96.12
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	96.12
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	96.1
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	96.09
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	96.07
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	96.06
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	96.04
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	96.01
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	96.01
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	95.98
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	95.97
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	95.97
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	95.96
2o07_A	304	Spermidine synthase; structural genomics, structur	95.96
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	95.95
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	95.95
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	95.95
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	95.93
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	95.93
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	95.91
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	95.9
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	95.9
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	95.88
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	95.87
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	95.87
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	95.86
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	95.84
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	95.83
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	95.83
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	95.82
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	95.81
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	95.81
2h00_A	254	Methyltransferase 10 domain containing protein; st	95.8
3lcc_A	235	Putative methyl chloride transferase; halide methy	95.8
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	95.79
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	95.75
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	95.74
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	95.73
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	95.73
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	95.73
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	95.71
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	95.7
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	95.69
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	95.69
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	95.68
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	95.64
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	95.64
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	95.63
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	95.62
3i9f_A	170	Putative type 11 methyltransferase; structural gen	95.62
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	95.61
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	95.59
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	95.59
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	95.54
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.54
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	95.53
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	95.51
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	95.51
3ocj_A	305	Putative exported protein; structural genomics, PS	95.5
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	95.49
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	95.48
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	95.43
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	95.42
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	95.41
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	95.41
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	95.39
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	95.36
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	95.32
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	95.32
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	95.29
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	95.28
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	95.27
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	95.26
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	95.24
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	95.21
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	95.19
3cc8_A	230	Putative methyltransferase; structural genomics, j	95.15
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	95.13
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	95.12
2pt6_A	321	Spermidine synthase; transferase, structural genom	95.11
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	95.08
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	95.08
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	95.0
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	94.99
3sso_A	419	Methyltransferase; macrolide, natural product, ros	94.96
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	94.93
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	94.92
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.87
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	94.86
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	94.82
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	94.8
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	94.8
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	94.79
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	94.77
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	94.73
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	94.7
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	94.64
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	94.63
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	94.49
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	94.48
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	94.47
2i7c_A	283	Spermidine synthase; transferase, structural genom	94.43
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	94.42
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	94.34
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	94.31
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	94.29
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	94.28
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	94.21
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	94.06
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	94.02
2frn_A	278	Hypothetical protein PH0793; structural genomics,	93.98
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	93.89
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	93.83
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	93.68
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	93.57
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	93.52
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	93.51
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	93.46
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	93.22
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	93.14
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	93.03
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	92.96
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	92.89
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	92.8
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	92.71
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	92.5
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	92.29
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	92.28
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	92.19
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	91.95
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	91.91
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	91.77
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	91.65
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	91.54
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	91.52
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	91.19
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	90.82
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	90.01
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	89.68
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	89.23
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	89.16
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	89.15
3ll7_A	410	Putative methyltransferase; methytransferase, stru	88.93
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	88.48
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	88.35
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	85.93
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	84.96
2qm3_A	373	Predicted methyltransferase; putative methyltransf	84.83
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	84.77
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	82.52
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	82.23
3k6r_A	278	Putative transferase PH0793; structural genomics,	81.77

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.22  E-value=3.3e-11  Score=81.90  Aligned_cols=56  Identities=70%  Similarity=0.934  Sum_probs=48.7

Q ss_pred             hhhhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           15 SQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        15 ~~~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      .+++..+..+.|.+++++++++..+++..++++|||||||+|++++++|+++|+++
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~  105 (247)
T 1sui_A           50 REVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDG  105 (247)
T ss_dssp             HHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTC
T ss_pred             HHHHHhcCCCCCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCC
Confidence            34444455668999999999999999999999999999999999999999998655

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.21  E-value=2.9e-11  Score=81.32  Aligned_cols=53  Identities=53%  Similarity=0.848  Sum_probs=47.2

Q ss_pred             hhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           18 IDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        18 ~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +..+..+.|.+++++++++..+++..++++|||||||+|++++++|+++|+++
T Consensus        44 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~   96 (237)
T 3c3y_A           44 NESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDG   96 (237)
T ss_dssp             HTTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTC
T ss_pred             HHhcCCCCCCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCC
Confidence            33445568999999999999999999999999999999999999999998655

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.15  E-value=5.9e-11  Score=80.45  Aligned_cols=53  Identities=45%  Similarity=0.814  Sum_probs=47.0

Q ss_pred             hhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           18 IDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        18 ~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +.....+.|.+++++++++..+++..++++|||||||+|+++++||+++++++
T Consensus        34 ~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~   86 (242)
T 3r3h_A           34 TSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDG   86 (242)
T ss_dssp             TSSSGGGGTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTC
T ss_pred             HHhCCCCCCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCC
Confidence            33445567889999999999999999999999999999999999999998655

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.13  E-value=1.1e-10  Score=78.31  Aligned_cols=50  Identities=18%  Similarity=0.165  Sum_probs=45.7

Q ss_pred             hcCcCCCCCHHHHHHHHHHHHhcCCC---eEEEeccchHHHHHHHHhhCCCCC
Q 043521           21 MRRNHMLSTPDEAQFLSMLLKLINAK---NTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        21 ~~~~~~~i~~~~g~~L~~l~~~~~~k---~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      .+.+.+.+++++++++..+++..+++   +|||||||+|+++++||+++++++
T Consensus        30 ~~~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   82 (221)
T 3dr5_A           30 AEFGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNT   82 (221)
T ss_dssp             HHTTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTS
T ss_pred             HHcCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCC
Confidence            35567889999999999999999999   999999999999999999998765

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.04  E-value=7.1e-10  Score=72.45  Aligned_cols=55  Identities=27%  Similarity=0.480  Sum_probs=47.4

Q ss_pred             hhhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           16 QHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        16 ~~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +.+.....+.+.+++.+++++..+++..++++|||||||+|++++++|+.+|+++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   84 (223)
T 3duw_A           30 QVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGG   84 (223)
T ss_dssp             HHHHHTTCCSCSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSC
T ss_pred             HHHhhCCCCCcccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCC
Confidence            3344455567788999999999999999999999999999999999999988654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.03  E-value=5.7e-10  Score=74.50  Aligned_cols=49  Identities=47%  Similarity=0.792  Sum_probs=44.1

Q ss_pred             cCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           22 RRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        22 ~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      ..+.|.+++.+++++..+++..++++|||||||+|++++++++.+++++
T Consensus        50 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   98 (232)
T 3cbg_A           50 PGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDG   98 (232)
T ss_dssp             TTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTC
T ss_pred             CCCccCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCC
Confidence            3445689999999999999999999999999999999999999988654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.96  E-value=1.9e-09  Score=72.67  Aligned_cols=53  Identities=32%  Similarity=0.533  Sum_probs=46.1

Q ss_pred             hhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           18 IDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        18 ~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      ......+.+.+++.+++++..++...++++|||||||+|++++++|+.+|+++
T Consensus        37 ~~~~~~p~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~   89 (248)
T 3tfw_A           37 NHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADG   89 (248)
T ss_dssp             HHHTTCBSCCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTC
T ss_pred             HHHcCCCccccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCC
Confidence            33445566778999999999999999999999999999999999999988654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.96  E-value=1.9e-09  Score=70.51  Aligned_cols=49  Identities=43%  Similarity=0.714  Sum_probs=44.5

Q ss_pred             cCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           22 RRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        22 ~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      ..+.+.+++++++++..+++..++++|||||||+|++++++++.+++++
T Consensus        47 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   95 (229)
T 2avd_A           47 PQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADG   95 (229)
T ss_dssp             TTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTC
T ss_pred             CCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCC
Confidence            3567899999999999999999999999999999999999999887543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.93  E-value=2.4e-09  Score=69.84  Aligned_cols=51  Identities=41%  Similarity=0.795  Sum_probs=45.8

Q ss_pred             hhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           20 GMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        20 ~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      .+..+.+.+++++++++..+++..++++|||||||+|++++++++.+|+++
T Consensus        40 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   90 (225)
T 3tr6_A           40 SFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDG   90 (225)
T ss_dssp             HCTTGGGSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTC
T ss_pred             hCCCCccccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCC
Confidence            445567899999999999999999999999999999999999999987544

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.92  E-value=2.6e-09  Score=70.27  Aligned_cols=46  Identities=20%  Similarity=0.342  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           25 HMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        25 ~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      .+.+++++++++..+++..++++|||||||+|++++++|+.+++++
T Consensus        39 ~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   84 (221)
T 3u81_A           39 AMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGA   84 (221)
T ss_dssp             GGGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTC
T ss_pred             CcccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCC
Confidence            4789999999999999999999999999999999999999887654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.83  E-value=2.8e-09  Score=72.47  Aligned_cols=42  Identities=29%  Similarity=0.285  Sum_probs=36.5

Q ss_pred             hhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           20 GMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        20 ~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+.+.+++++++++||+.  +..++++||||||  ||||+|||+.
T Consensus         8 ~~~~P~~~v~~~~~~~L~~--~l~~a~~VLEiGt--GySTl~lA~~   49 (202)
T 3cvo_A            8 DQMRPELTMPPAEAEALRM--AYEEAEVILEYGS--GGSTVVAAEL   49 (202)
T ss_dssp             -CCCCCCCSCHHHHHHHHH--HHHHCSEEEEESC--SHHHHHHHTS
T ss_pred             CCCCCCccCCHHHHHHHHH--HhhCCCEEEEECc--hHHHHHHHHc
Confidence            4566788999999999999  5679999999998  7999999984

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.82  E-value=8.7e-09  Score=66.97  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=43.8

Q ss_pred             cCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           22 RRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        22 ~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +.+.+.+++.+++++..+++..++++|||||||+|++++++++.+++++
T Consensus        34 ~~~~p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   82 (210)
T 3c3p_A           34 ERNIPIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISS   82 (210)
T ss_dssp             HTTCCCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTC
T ss_pred             HcCCCCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCC
Confidence            3456789999999999999999999999999999999999999987543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.82  E-value=1e-08  Score=68.11  Aligned_cols=56  Identities=41%  Similarity=0.705  Sum_probs=45.4

Q ss_pred             hhhhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           15 SQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        15 ~~~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      .+.+.....+.+.+.+.+++++..+++..++++|||||||+|+++.++++.+++++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~   86 (239)
T 2hnk_A           31 RKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDG   86 (239)
T ss_dssp             HHHHHTC---CCSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTC
T ss_pred             HHHHHHcCCcccccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCC
Confidence            33444445566799999999999999999999999999999999999999987543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.55  E-value=1.4e-07  Score=62.68  Aligned_cols=45  Identities=24%  Similarity=0.310  Sum_probs=41.1

Q ss_pred             CcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           23 RNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        23 ~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+.+.+.++.++++..+++..++++|||||||+|++++++|+..+
T Consensus        50 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~   94 (232)
T 3ntv_A           50 NEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD   94 (232)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCT
T ss_pred             cCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCC
Confidence            356778899999999999999999999999999999999999655

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.41  E-value=7e-07  Score=58.69  Aligned_cols=46  Identities=28%  Similarity=0.345  Sum_probs=42.3

Q ss_pred             cCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           22 RRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        22 ~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +.+.+.+.+..++++..++...++++|||||||+|++++++++.+|
T Consensus        32 ~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~   77 (233)
T 2gpy_A           32 EQQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP   77 (233)
T ss_dssp             HTTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT
T ss_pred             HcCCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC
Confidence            4466789999999999999999999999999999999999999876

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.38  E-value=1.6e-07  Score=66.42  Aligned_cols=41  Identities=10%  Similarity=0.074  Sum_probs=36.5

Q ss_pred             CCCHHHHHHHHHHHHh----cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           27 LSTPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~----~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .++++.+.+|+.+++.    ..|++||||||+.|+|+++||++++
T Consensus        85 mv~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~  129 (282)
T 2wk1_A           85 MIGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILR  129 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhH
Confidence            4778889999999987    4499999999999999999999875

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.32  E-value=6.8e-07  Score=60.13  Aligned_cols=39  Identities=26%  Similarity=0.394  Sum_probs=35.4

Q ss_pred             CCC-HHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           27 LST-PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        27 ~i~-~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ... ++...++..++...++++|||||||+|+++.++|+.
T Consensus        63 ~~~~p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~  102 (236)
T 2bm8_A           63 MLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDL  102 (236)
T ss_dssp             CCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHh
Confidence            344 888999999999999999999999999999999987

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=97.63  E-value=3.3e-05  Score=51.43  Aligned_cols=57  Identities=21%  Similarity=0.146  Sum_probs=39.0

Q ss_pred             HHHHHhhhhhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521            9 FYFVYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +|.+.+.+..+......+.........+..+....+..+|||||||+|..+..+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~   67 (267)
T 3kkz_A           11 FELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH   67 (267)
T ss_dssp             HHHHHHHHHHHTSSCSSSCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHhhccccCCCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc
Confidence            455666666655555444444444445554444566789999999999999999986

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.42  E-value=0.0002  Score=47.16  Aligned_cols=47  Identities=19%  Similarity=0.275  Sum_probs=36.6

Q ss_pred             CcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521           23 RNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDD   69 (71)
Q Consensus        23 ~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~   69 (71)
                      .....+.+.....+...+...+..+|||+|||+|..+.++++.+.++
T Consensus        72 ~~~~~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~  118 (255)
T 3mb5_A           72 RGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPE  118 (255)
T ss_dssp             CCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTT
T ss_pred             cccccccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCC
Confidence            33344566667777777777788899999999999999999985443

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=97.31  E-value=0.00024  Score=45.64  Aligned_cols=43  Identities=19%  Similarity=0.193  Sum_probs=34.4

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           25 HMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        25 ~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ...+.+..-+++..++...++++|||||||+|..+.++++..+
T Consensus        10 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~   52 (219)
T 3jwg_A           10 KLNLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKS   52 (219)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTT
T ss_pred             CCcchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCC
Confidence            3445566677787788888999999999999999999998654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=97.29  E-value=0.00025  Score=45.63  Aligned_cols=41  Identities=17%  Similarity=0.071  Sum_probs=34.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ...+..-+++..++...++++|||||||+|..+.++++..+
T Consensus        12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~   52 (217)
T 3jwh_A           12 SLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSF   52 (217)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC
Confidence            45566677888888888999999999999999999998644

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.24  E-value=0.00048  Score=43.36  Aligned_cols=41  Identities=20%  Similarity=0.418  Sum_probs=31.7

Q ss_pred             CCCHHHHHHHHHHHHh----cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           27 LSTPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~----~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ...+++-.++..++..    .+..+|||+|||+|..++.+++..+
T Consensus         9 ~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~   53 (215)
T 4dzr_A            9 IPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP   53 (215)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT
T ss_pred             CCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC
Confidence            3446666666666655    5677999999999999999999865

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=97.21  E-value=0.00017  Score=47.23  Aligned_cols=42  Identities=21%  Similarity=0.192  Sum_probs=30.4

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +........++..+....+..+|||||||+|..+..+++..+
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~   69 (257)
T 3f4k_A           28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK   69 (257)
T ss_dssp             SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC
Confidence            333344445555554556677999999999999999998765

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.21  E-value=0.00061  Score=47.19  Aligned_cols=45  Identities=13%  Similarity=0.289  Sum_probs=33.3

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +...+-+...+.+-..+...+..+|||||||+|+.++.+++..++
T Consensus        85 ~~~~~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~  129 (336)
T 2b25_A           85 GTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGS  129 (336)
T ss_dssp             SSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred             CCcccCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCC
Confidence            333455554555555556777789999999999999999987644

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=97.19  E-value=0.00064  Score=42.91  Aligned_cols=38  Identities=16%  Similarity=0.162  Sum_probs=28.9

Q ss_pred             CCCHHHHHHHHHHHHh--cCCCeEEEeccchHHHHHHHHhh
Q 043521           27 LSTPDEAQFLSMLLKL--INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~--~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...++...++.. +..  .+.++|||||||+|..++.+++.
T Consensus         5 ~P~~~~~~l~~~-l~~~~~~~~~vLD~GcG~G~~~~~l~~~   44 (170)
T 3q87_B            5 EPGEDTYTLMDA-LEREGLEMKIVLDLGTSTGVITEQLRKR   44 (170)
T ss_dssp             CCCHHHHHHHHH-HHHHTCCSCEEEEETCTTCHHHHHHTTT
T ss_pred             CcCccHHHHHHH-HHhhcCCCCeEEEeccCccHHHHHHHhc
Confidence            344555555555 555  67889999999999999999874

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.18  E-value=0.00055  Score=45.58  Aligned_cols=47  Identities=17%  Similarity=0.138  Sum_probs=34.5

Q ss_pred             cCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           22 RRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        22 ~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ......+.+.....+...+...+..+|||||||+|..+..+++.+.+
T Consensus        77 ~~~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~  123 (280)
T 1i9g_A           77 PRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGP  123 (280)
T ss_dssp             CSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred             cccceeecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCC
Confidence            34444566665655555566667779999999999999999987544

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.14  E-value=0.00067  Score=44.74  Aligned_cols=25  Identities=16%  Similarity=0.384  Sum_probs=21.6

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+..+|||||||+|+.++.+|...+
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~   93 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFP   93 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCC
Confidence            3678999999999999999997544

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.13  E-value=0.00039  Score=44.58  Aligned_cols=40  Identities=28%  Similarity=0.298  Sum_probs=31.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+.....+..++...+..+|||||||+|+.+..+++..+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~  100 (215)
T 2yxe_A           61 SAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVG  100 (215)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhC
Confidence            4456565665666667778999999999999999998764

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.12  E-value=0.0005  Score=43.89  Aligned_cols=38  Identities=29%  Similarity=0.350  Sum_probs=30.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+.....+...+...+..+|||||||+|+.+..+++.
T Consensus        61 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~   98 (210)
T 3lbf_A           61 SQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL   98 (210)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh
Confidence            35666666666666778889999999999999999976

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=97.10  E-value=0.00074  Score=41.45  Aligned_cols=40  Identities=13%  Similarity=0.038  Sum_probs=32.1

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHh
Q 043521           25 HMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        25 ~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~   64 (71)
                      .+...+...+.+...+...+..+|||||||+|..+..+++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~   55 (183)
T 2yxd_A           16 VPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK   55 (183)
T ss_dssp             BCCCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh
Confidence            3456666666766666777788999999999999999987

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.10  E-value=0.00032  Score=46.63  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=25.4

Q ss_pred             HHHHHHHHhc--CCCeEEEeccchHHHHHHHHhhCC
Q 043521           34 QFLSMLLKLI--NAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        34 ~~L~~l~~~~--~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .++..+++..  +..+|||||||+|+++.++++..+
T Consensus        48 ~~m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~   83 (236)
T 3orh_A           48 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPI   83 (236)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHTTSCE
T ss_pred             HHHHHHHHhhccCCCeEEEECCCccHHHHHHHHhCC
Confidence            3445555543  445999999999999999998644

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.09  E-value=0.00081  Score=43.95  Aligned_cols=43  Identities=26%  Similarity=0.332  Sum_probs=31.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ..+.+.....+...+...+..+|||+|||+|..++.+++.+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~  120 (258)
T 2pwy_A           78 TPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGE  120 (258)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred             ccccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCC
Confidence            3444544555555556667789999999999999999988543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=97.08  E-value=0.00017  Score=48.69  Aligned_cols=30  Identities=20%  Similarity=0.326  Sum_probs=25.6

Q ss_pred             HHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           39 LLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        39 l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +.+..++.+|||||||+|..+..+++..|+
T Consensus        17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~   46 (284)
T 3gu3_A           17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPE   46 (284)
T ss_dssp             TSCCCSCCEEEEETCTTTHHHHHHTTTSCT
T ss_pred             HhccCCCCeEEEecCCCCHHHHHHHHhCCC
Confidence            334567889999999999999999998775

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.07  E-value=0.00086  Score=43.34  Aligned_cols=39  Identities=21%  Similarity=0.351  Sum_probs=28.1

Q ss_pred             CHHHH-HHHHHHH-HhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           29 TPDEA-QFLSMLL-KLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        29 ~~~~g-~~L~~l~-~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+... .++..+. ...+..+|||||||+|+.+..+++...
T Consensus        63 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~  103 (227)
T 2pbf_A           63 APHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMN  103 (227)
T ss_dssp             CHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhc
Confidence            44443 3344443 345667999999999999999998775

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=97.06  E-value=0.0011  Score=43.28  Aligned_cols=41  Identities=17%  Similarity=0.121  Sum_probs=30.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ...+...+.+...+...+..+|||||||+|..+..+++..+
T Consensus        19 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~   59 (256)
T 1nkv_A           19 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG   59 (256)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcC
Confidence            34444455555555566778999999999999999998753

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.06  E-value=0.00077  Score=43.02  Aligned_cols=40  Identities=13%  Similarity=0.115  Sum_probs=31.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ...+....+-..+...+..+|||||||+|+.++.+++..|
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~   63 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMP   63 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC
Confidence            5555555555555667778999999999999999998864

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.01  E-value=0.0013  Score=40.51  Aligned_cols=40  Identities=15%  Similarity=0.066  Sum_probs=32.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ...++..+.+...+...+..+|||+|||+|..+..+++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~   55 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV   55 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc
Confidence            5556666777677777788899999999999999998753

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=96.99  E-value=0.00044  Score=46.19  Aligned_cols=47  Identities=13%  Similarity=0.012  Sum_probs=37.2

Q ss_pred             hhcCcCCCCCHHHHHHHHHHHHhc-CCCeEEEeccchHHHHHHHHhhCC
Q 043521           20 GMRRNHMLSTPDEAQFLSMLLKLI-NAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        20 ~~~~~~~~i~~~~g~~L~~l~~~~-~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+....+..+.+ +.++..++... +..+|||||||+|..++.+++..+
T Consensus        25 ~q~~~~~~~~~d-~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~   72 (259)
T 3lpm_A           25 IQSPSVFSFSID-AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK   72 (259)
T ss_dssp             EEBTTTBCCCHH-HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC
T ss_pred             EeCCCCccCcHH-HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC
Confidence            344556666655 77888888777 788999999999999999998643

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=96.95  E-value=0.0016  Score=42.32  Aligned_cols=41  Identities=15%  Similarity=0.025  Sum_probs=31.6

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           25 HMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        25 ~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+...++....+-..+...+..+|||||||+|+.++.+|+.
T Consensus        36 ~~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~   76 (204)
T 3njr_A           36 GQITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA   76 (204)
T ss_dssp             SCCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc
Confidence            34555566666655666677789999999999999999976

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.95  E-value=0.00075  Score=44.24  Aligned_cols=40  Identities=18%  Similarity=0.304  Sum_probs=31.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+.....+..++...+..+|||||||+|+.+..+++..+
T Consensus        75 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~  114 (235)
T 1jg1_A           75 SAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK  114 (235)
T ss_dssp             CCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC
Confidence            4555566666666667778999999999999999998753

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.94  E-value=0.0015  Score=43.82  Aligned_cols=43  Identities=21%  Similarity=0.396  Sum_probs=32.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDD   69 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~   69 (71)
                      .+.+.....+...+...+..+|||+|||+|..++.+++.+.++
T Consensus        95 ~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~  137 (277)
T 1o54_A           95 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSS  137 (277)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTT
T ss_pred             ccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCC
Confidence            3455555555555666677899999999999999999986543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=96.94  E-value=0.00096  Score=41.09  Aligned_cols=34  Identities=15%  Similarity=0.038  Sum_probs=25.6

Q ss_pred             HHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           34 QFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        34 ~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +.+...+...+..+|||||||+|..++.+++..|
T Consensus        15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~   48 (178)
T 3hm2_A           15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTP   48 (178)
T ss_dssp             HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSS
T ss_pred             HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCC
Confidence            3333334445666999999999999999998764

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=96.90  E-value=0.00083  Score=42.52  Aligned_cols=34  Identities=12%  Similarity=-0.004  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           31 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        31 ~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ....++..+.... ..+|||||||+|..+.++++.
T Consensus        29 ~~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~   62 (203)
T 3h2b_A           29 PDRVLIEPWATGV-DGVILDVGSGTGRWTGHLASL   62 (203)
T ss_dssp             TTHHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhc
Confidence            3456666666655 889999999999999999875

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=96.89  E-value=0.00074  Score=44.05  Aligned_cols=23  Identities=13%  Similarity=0.034  Sum_probs=20.6

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+..+|||||||+|+.+..+++.
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~   69 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ   69 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc
Confidence            56789999999999999999875

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=96.88  E-value=0.0011  Score=44.20  Aligned_cols=37  Identities=16%  Similarity=0.209  Sum_probs=31.6

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           29 TPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        29 ~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .....+++..++...++.+|||||||+|..+..+++.
T Consensus        42 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~   78 (293)
T 3thr_A           42 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE   78 (293)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC
Confidence            3455678888888888999999999999999999875

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=96.88  E-value=0.00048  Score=41.64  Aligned_cols=26  Identities=15%  Similarity=0.190  Sum_probs=22.3

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+..+|||+|||+|..+.++++.++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~   45 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIG   45 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhC
Confidence            35567999999999999999998764

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=96.83  E-value=0.002  Score=43.91  Aligned_cols=36  Identities=19%  Similarity=0.275  Sum_probs=26.1

Q ss_pred             HHHHHHHHh--cCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521           34 QFLSMLLKL--INAKNTMEIGVYTGYSLLYTALAIPDD   69 (71)
Q Consensus        34 ~~L~~l~~~--~~~k~iLEIGT~~GySal~lA~al~~~   69 (71)
                      +++..+++.  .+-.+|||||||+|..++.+++..+..
T Consensus        58 ~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~   95 (261)
T 4gek_A           58 SMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHD   95 (261)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSS
T ss_pred             HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCC
Confidence            334444442  344689999999999999999987643

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=96.82  E-value=0.0011  Score=42.52  Aligned_cols=34  Identities=12%  Similarity=0.169  Sum_probs=26.6

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ..++..+.+..++.+|||||||+|..+..+++..
T Consensus        31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~   64 (250)
T 2p7i_A           31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF   64 (250)
T ss_dssp             HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC
T ss_pred             HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC
Confidence            3445555556778899999999999999998754

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=96.78  E-value=0.00085  Score=44.43  Aligned_cols=25  Identities=40%  Similarity=0.441  Sum_probs=22.5

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +..+|||||||+|.+++.+|+..|+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~   58 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPE   58 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTT
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCC
Confidence            6779999999999999999998764

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=96.77  E-value=0.0016  Score=43.96  Aligned_cols=25  Identities=16%  Similarity=0.376  Sum_probs=21.9

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +..+|||||||+|+.++.+|...|.
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~  104 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPE  104 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCC
Confidence            4679999999999999999987653

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=96.77  E-value=0.002  Score=42.77  Aligned_cols=37  Identities=22%  Similarity=0.078  Sum_probs=28.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHh
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~   64 (71)
                      ..+...+.+...+...++.+|||||||+|..+..+++
T Consensus        18 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~   54 (261)
T 3ege_A           18 PDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN   54 (261)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT
T ss_pred             ccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh
Confidence            3444555555555556888999999999999999986

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.77  E-value=0.0021  Score=43.60  Aligned_cols=39  Identities=10%  Similarity=-0.116  Sum_probs=28.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+...+++..+....+..+|||+|||+|..+.+||+.
T Consensus        51 ~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~   89 (252)
T 2gb4_A           51 QGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR   89 (252)
T ss_dssp             TCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT
T ss_pred             CCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC
Confidence            445554555554443346789999999999999999974

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.74  E-value=0.0011  Score=45.84  Aligned_cols=41  Identities=22%  Similarity=0.280  Sum_probs=31.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ..+...+.+...+...+..+|||||||+|+.+..+++..++
T Consensus        59 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~   99 (317)
T 1dl5_A           59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGE   99 (317)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred             cCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCC
Confidence            34455555555556667789999999999999999987553

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=96.73  E-value=0.0015  Score=43.17  Aligned_cols=36  Identities=14%  Similarity=0.060  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           32 EAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        32 ~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +.+....++..   .+.++|||||||+|+.+..+++..+
T Consensus        28 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g   66 (275)
T 3bkx_A           28 QTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVG   66 (275)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhC
Confidence            44444444443   4567999999999999999998753

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.71  E-value=0.0017  Score=41.89  Aligned_cols=40  Identities=23%  Similarity=0.268  Sum_probs=30.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ...+...+.+..++...+..+|||||||+|+.+..+++..
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~   92 (231)
T 1vbf_A           53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV   92 (231)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS
T ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc
Confidence            3455555555555566677899999999999999998753

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=96.71  E-value=0.0017  Score=41.39  Aligned_cols=32  Identities=28%  Similarity=0.190  Sum_probs=24.6

Q ss_pred             HHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           34 QFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        34 ~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +++..+....+..+|||||||+|..+..+++.
T Consensus        41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~   72 (216)
T 3ofk_A           41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH   72 (216)
T ss_dssp             HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG
T ss_pred             HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc
Confidence            44444445566679999999999999999874

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=96.67  E-value=0.00039  Score=45.00  Aligned_cols=26  Identities=15%  Similarity=0.239  Sum_probs=22.7

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..++.+|||||||+|..+..+++..|
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~   67 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYP   67 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCT
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC
Confidence            34678999999999999999999875

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.67  E-value=0.0015  Score=42.70  Aligned_cols=33  Identities=12%  Similarity=0.141  Sum_probs=24.5

Q ss_pred             HHHHHHHHHh--cCCCeEEEeccchHHHHHHHHhh
Q 043521           33 AQFLSMLLKL--INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        33 g~~L~~l~~~--~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..++..+++.  .+..+|||||||+|..+..+++.
T Consensus        47 ~~~~~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~   81 (236)
T 1zx0_A           47 TPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEA   81 (236)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTS
T ss_pred             HHHHHHHHhhcCCCCCeEEEEeccCCHHHHHHHhc
Confidence            3445555544  45569999999999999999764

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=96.66  E-value=0.001  Score=43.74  Aligned_cols=25  Identities=12%  Similarity=0.142  Sum_probs=21.7

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+..+|||||||+|+.+..+++..+
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~   80 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVD   80 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTT
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcC
Confidence            3456899999999999999998776

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=96.65  E-value=0.0023  Score=40.40  Aligned_cols=33  Identities=6%  Similarity=0.050  Sum_probs=24.4

Q ss_pred             HHHHHHHHHh--cCCCeEEEeccchHHHHHHHHhh
Q 043521           33 AQFLSMLLKL--INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        33 g~~L~~l~~~--~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..++..+...  .+.++|||+|||+|..++++++.
T Consensus        31 ~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~   65 (189)
T 3p9n_A           31 ESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR   65 (189)
T ss_dssp             HHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC
Confidence            3444444443  57789999999999999987763

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.64  E-value=0.0017  Score=41.85  Aligned_cols=35  Identities=17%  Similarity=0.219  Sum_probs=26.0

Q ss_pred             HHHHHHH-HhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           34 QFLSMLL-KLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        34 ~~L~~l~-~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .++..+. ...+..+|||||||+|+.+..+++..++
T Consensus        66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~  101 (226)
T 1i1n_A           66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGC  101 (226)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCT
T ss_pred             HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCC
Confidence            4444443 2446679999999999999999987643

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.64  E-value=0.00094  Score=41.51  Aligned_cols=32  Identities=9%  Similarity=0.090  Sum_probs=24.1

Q ss_pred             HHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           34 QFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        34 ~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .++..+....+.++|||+|||+|..++.+++.
T Consensus        21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~   52 (177)
T 2esr_A           21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR   52 (177)
T ss_dssp             HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc
Confidence            33333332457789999999999999999875

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=96.63  E-value=0.0018  Score=41.10  Aligned_cols=24  Identities=13%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +..+|||||||+|..++.+++..|
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~   88 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRP   88 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCC
Confidence            368999999999999999998765

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.62  E-value=0.0018  Score=40.45  Aligned_cols=22  Identities=9%  Similarity=0.060  Sum_probs=19.8

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +..+|||||||+|+.++++|+.
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~   43 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGL   43 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh
Confidence            4579999999999999999975

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.60  E-value=0.0015  Score=44.76  Aligned_cols=40  Identities=18%  Similarity=0.068  Sum_probs=30.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+++...+-+-..+...+..+|||||||+|+.|..+++.
T Consensus        11 FL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~   50 (255)
T 3tqs_A           11 FLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE   50 (255)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT
T ss_pred             cccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh
Confidence            3456665555555666667789999999999999999875

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=96.59  E-value=0.0014  Score=42.74  Aligned_cols=26  Identities=23%  Similarity=0.195  Sum_probs=22.5

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+..+|||||||+|..++.+|+..|.
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~   62 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPD   62 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTT
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCC
Confidence            45678999999999999999988653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.58  E-value=0.0013  Score=41.23  Aligned_cols=26  Identities=8%  Similarity=0.019  Sum_probs=22.6

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+..+|||||||+|..++.+++..++
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~   46 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNA   46 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhcc
Confidence            34679999999999999999998764

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=96.57  E-value=0.002  Score=43.92  Aligned_cols=32  Identities=9%  Similarity=0.149  Sum_probs=24.8

Q ss_pred             HHHHHHhcCCC-eEEEeccchHHHHHHHHhhCC
Q 043521           36 LSMLLKLINAK-NTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        36 L~~l~~~~~~k-~iLEIGT~~GySal~lA~al~   67 (71)
                      |..+....++. +|+||||++|+.++.+|+.-|
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~   38 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQ   38 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTS
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCC
Confidence            44555555554 899999999999999998643

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=96.57  E-value=0.0021  Score=43.86  Aligned_cols=51  Identities=16%  Similarity=0.085  Sum_probs=28.2

Q ss_pred             HHhhhhhhhhcCcCCCCCHHHHHHHHHHHHhcC-CCeEEEeccchHHHHHHHHhh
Q 043521           12 VYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLIN-AKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        12 ~~~~~~~~~~~~~~~~i~~~~g~~L~~l~~~~~-~k~iLEIGT~~GySal~lA~a   65 (71)
                      |.|....+......|.-+++   ++..+....+ ..+|||||||+|..+..|++.
T Consensus         9 d~F~~~a~~Y~~~Rp~yp~~---l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~   60 (257)
T 4hg2_A            9 DHFTPVADAYRAFRPRYPRA---LFRWLGEVAPARGDALDCGCGSGQASLGLAEF   60 (257)
T ss_dssp             -----------CCCCCCCHH---HHHHHHHHSSCSSEEEEESCTTTTTHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCcHHH---HHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHh
Confidence            55555555555555555554   4444544443 358999999999999999875

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.56  E-value=0.0011  Score=41.79  Aligned_cols=27  Identities=7%  Similarity=0.147  Sum_probs=22.6

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPDD   69 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~~   69 (71)
                      .+..+|||+|||+|..++.+++..+++
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~   47 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGEN   47 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTT
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCC
Confidence            445699999999999999999986543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=96.53  E-value=0.0019  Score=40.25  Aligned_cols=29  Identities=24%  Similarity=0.395  Sum_probs=23.8

Q ss_pred             HHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           37 SMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        37 ~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..++...++.+|||||||+|..+.++++.
T Consensus        25 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~   53 (199)
T 2xvm_A           25 LEAVKVVKPGKTLDLGCGNGRNSLYLAAN   53 (199)
T ss_dssp             HHHTTTSCSCEEEEETCTTSHHHHHHHHT
T ss_pred             HHHhhccCCCeEEEEcCCCCHHHHHHHHC
Confidence            33445567889999999999999999875

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.53  E-value=0.0015  Score=45.47  Aligned_cols=47  Identities=13%  Similarity=0.171  Sum_probs=36.0

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +...+-.....+...++...+..+|||+|||+|..++.+|+.+++++
T Consensus        98 G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~  144 (315)
T 1ixk_A           98 GLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDG  144 (315)
T ss_dssp             TSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCS
T ss_pred             ceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCC
Confidence            44445555566666777777778999999999999999999886544

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=96.52  E-value=0.00091  Score=45.10  Aligned_cols=36  Identities=19%  Similarity=0.184  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           32 EAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        32 ~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+.+|..++...+..+|||||||+|..++.+++..|
T Consensus        24 D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~   59 (260)
T 2ozv_A           24 DAMLLASLVADDRACRIADLGAGAGAAGMAVAARLE   59 (260)
T ss_dssp             HHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT
T ss_pred             HHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC
Confidence            366777777777778999999999999999998765

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=96.52  E-value=0.0045  Score=37.67  Aligned_cols=22  Identities=14%  Similarity=-0.100  Sum_probs=20.3

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +.++|||+|||+|..++.+++.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~   62 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASE   62 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHC
Confidence            7789999999999999999875

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=96.50  E-value=0.0018  Score=41.77  Aligned_cols=26  Identities=23%  Similarity=0.152  Sum_probs=22.6

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+..+|||||||+|..++.+|+..|.
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~   65 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPD   65 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTT
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCC
Confidence            35679999999999999999998763

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=96.49  E-value=0.0044  Score=41.62  Aligned_cols=40  Identities=23%  Similarity=0.245  Sum_probs=30.7

Q ss_pred             CCHHHHHHHHHHHHh--cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           28 STPDEAQFLSMLLKL--INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        28 i~~~~g~~L~~l~~~--~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+++-.++..++..  .+..+|||||||+|..++.+++..|
T Consensus        91 pr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~  132 (276)
T 2b3t_A           91 PRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP  132 (276)
T ss_dssp             CCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT
T ss_pred             cCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCC
Confidence            345555666666665  4567999999999999999998765

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=96.49  E-value=0.0019  Score=41.47  Aligned_cols=26  Identities=15%  Similarity=0.111  Sum_probs=22.6

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+..+|||||||+|..+..+++..|
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p   50 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNP   50 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCT
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCC
Confidence            45677999999999999999998754

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.48  E-value=0.0021  Score=40.66  Aligned_cols=33  Identities=18%  Similarity=-0.008  Sum_probs=26.2

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..++..+....+..+|||||||+|..+..+++.
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~   67 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL   67 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc
Confidence            455555555666689999999999999999875

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=96.48  E-value=0.0031  Score=39.84  Aligned_cols=30  Identities=13%  Similarity=0.160  Sum_probs=24.0

Q ss_pred             HHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           36 LSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        36 L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +...+...++.+|||||||+|..+..+++.
T Consensus        44 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~   73 (227)
T 3e8s_A           44 ILLAILGRQPERVLDLGCGEGWLLRALADR   73 (227)
T ss_dssp             HHHHHHHTCCSEEEEETCTTCHHHHHHHTT
T ss_pred             HHHHhhcCCCCEEEEeCCCCCHHHHHHHHC
Confidence            334445567799999999999999999875

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=96.48  E-value=0.0013  Score=42.95  Aligned_cols=35  Identities=17%  Similarity=0.200  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHhc----CCCeEEEeccchHHHHHHHHhhC
Q 043521           32 EAQFLSMLLKLI----NAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        32 ~g~~L~~l~~~~----~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ...++..++...    ++.+|||||||+|..+..+++..
T Consensus        63 ~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~  101 (241)
T 2ex4_A           63 SRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL  101 (241)
T ss_dssp             HHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc
Confidence            456666666654    47899999999999999988754

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=96.46  E-value=0.0037  Score=42.17  Aligned_cols=40  Identities=15%  Similarity=0.088  Sum_probs=27.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      +.-.+..-+++..+.. .+.++|||||||+|..+..+++.+
T Consensus        19 p~y~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~   58 (299)
T 3g5t_A           19 PSYPSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQEL   58 (299)
T ss_dssp             CCCCHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhC
Confidence            3444443444433322 477899999999999999999765

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.45  E-value=0.00096  Score=44.97  Aligned_cols=35  Identities=26%  Similarity=0.349  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+.+...+...+..+|||+|||+|..++.+++.+.
T Consensus        99 ~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~  133 (275)
T 1yb2_A           99 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALN  133 (275)
T ss_dssp             -------CCCCTTCEEEEECCTTSHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcC
Confidence            34444445556678999999999999999998743

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.42  E-value=0.005  Score=39.05  Aligned_cols=41  Identities=12%  Similarity=0.170  Sum_probs=29.3

Q ss_pred             CCCCCHHHHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhh
Q 043521           25 HMLSTPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        25 ~~~i~~~~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ....+....+.+..++..   .+.++|||+|||+|..++.+++.
T Consensus        29 ~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~   72 (200)
T 1ne2_A           29 QYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL   72 (200)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT
T ss_pred             ecCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc
Confidence            344556655555555543   36679999999999999999875

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.42  E-value=0.0049  Score=40.13  Aligned_cols=34  Identities=21%  Similarity=0.270  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHhc---CCCeEEEeccchHHHHHHHHhh
Q 043521           32 EAQFLSMLLKLI---NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        32 ~g~~L~~l~~~~---~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+++..+++..   ++++|||||||+|..+..+++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~   62 (252)
T 1wzn_A           26 EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER   62 (252)
T ss_dssp             HHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC
Confidence            356677666653   4579999999999999999874

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=96.41  E-value=0.0016  Score=43.62  Aligned_cols=27  Identities=22%  Similarity=0.166  Sum_probs=22.0

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ..+..+|||||||+|..++.+|+..|+
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~   70 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPD   70 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTT
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCC
Confidence            345678999999999999999988663

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=96.41  E-value=0.00084  Score=46.29  Aligned_cols=24  Identities=25%  Similarity=0.072  Sum_probs=20.5

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .++.+|||||+|+||++++++++.
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~   82 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAF   82 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEECCChHHHHHHHHHHH
Confidence            356799999999999999988763

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=96.41  E-value=0.0053  Score=39.77  Aligned_cols=39  Identities=21%  Similarity=0.352  Sum_probs=31.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+.+.....+...+...+..+|||+|||+|..++.+++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~  112 (248)
T 2yvl_A           74 IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV  112 (248)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             cccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh
Confidence            345666666666666677789999999999999999886

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=96.40  E-value=0.0048  Score=40.35  Aligned_cols=38  Identities=11%  Similarity=0.097  Sum_probs=30.1

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           29 TPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        29 ~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .+....-+..+....+..+|||||||+|..+..+++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~   43 (239)
T 1xxl_A            6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV   43 (239)
T ss_dssp             CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS
T ss_pred             cCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC
Confidence            34455566667777888899999999999999998754

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=96.40  E-value=0.0021  Score=40.55  Aligned_cols=32  Identities=16%  Similarity=0.151  Sum_probs=25.3

Q ss_pred             HHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           34 QFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        34 ~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +++..++...++.+|||||||+|..+..+++.
T Consensus        19 ~~l~~~~~~~~~~~vLdiGcG~G~~~~~l~~~   50 (202)
T 2kw5_A           19 DFLVSVANQIPQGKILCLAEGEGRNACFLASL   50 (202)
T ss_dssp             SSHHHHHHHSCSSEEEECCCSCTHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCHhHHHHHhC
Confidence            45555566566669999999999999999874

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=96.40  E-value=0.002  Score=39.92  Aligned_cols=22  Identities=5%  Similarity=-0.000  Sum_probs=19.8

Q ss_pred             cCCCeEEEeccchHHHHHHHHh
Q 043521           43 INAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~   64 (71)
                      .+.++|||+|||+|..++.+++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~   64 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVS   64 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHH
T ss_pred             cCCCCEEEeCCccCHHHHHHHH
Confidence            4678999999999999999887

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=96.38  E-value=0.0072  Score=38.29  Aligned_cols=40  Identities=23%  Similarity=0.118  Sum_probs=29.8

Q ss_pred             CCCCHHHHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhh
Q 043521           26 MLSTPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...++...+.+...+..   .+.++|||+|||+|..++.+++.
T Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~   70 (207)
T 1wy7_A           28 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL   70 (207)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT
T ss_pred             ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc
Confidence            45666666555555543   35679999999999999999875

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=96.37  E-value=0.0014  Score=41.41  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=21.9

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+..+|||||||+|..+..+++..+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~   45 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTK   45 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcC
Confidence            3456899999999999999998876

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=96.37  E-value=0.0041  Score=40.12  Aligned_cols=33  Identities=9%  Similarity=0.035  Sum_probs=24.1

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..++..+....+..+|||+|||+|..++.++..
T Consensus        42 ~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~   74 (201)
T 2ift_A           42 ETLFNWLMPYIHQSECLDGFAGSGSLGFEALSR   74 (201)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHc
Confidence            344444444347789999999999999986654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.37  E-value=0.0038  Score=40.34  Aligned_cols=37  Identities=11%  Similarity=0.064  Sum_probs=25.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +.+..-+++..+ ...+..+|||+|||+|..+.++|+.
T Consensus         7 ~~~~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~   43 (203)
T 1pjz_A            7 VNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ   43 (203)
T ss_dssp             STHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH
T ss_pred             CCHHHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHC
Confidence            344434444332 2246679999999999999999974

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=96.33  E-value=0.0037  Score=43.95  Aligned_cols=39  Identities=18%  Similarity=0.032  Sum_probs=28.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+++...+-+-..+...+..+|||||||+|+.|..+++.
T Consensus        33 L~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~   71 (295)
T 3gru_A           33 LIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN   71 (295)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc
Confidence            455554444444444455679999999999999999975

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=96.32  E-value=0.0034  Score=40.85  Aligned_cols=32  Identities=9%  Similarity=0.021  Sum_probs=25.2

Q ss_pred             HHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           34 QFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        34 ~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+...+....+..+|||+|||+|..++.+++.
T Consensus        68 ~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~   99 (241)
T 3gdh_A           68 HIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT   99 (241)
T ss_dssp             HHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT
T ss_pred             HHHHHhhhccCCCEEEECccccCHHHHHHHHc
Confidence            34444444558889999999999999999974

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=96.32  E-value=0.0031  Score=38.86  Aligned_cols=33  Identities=12%  Similarity=0.081  Sum_probs=25.2

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+.+...+...+.++|||||||+|..+..+++.
T Consensus        41 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~   73 (194)
T 1dus_A           41 TKILVENVVVDKDDDILDLGCGYGVIGIALADE   73 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG
T ss_pred             HHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc
Confidence            344444445557789999999999999999875

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=96.32  E-value=0.0018  Score=45.46  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=21.5

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhh
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+.++|||||||+|..++.+++.
T Consensus        47 ~~~~~~~VLDiGcGtG~ls~~la~~   71 (348)
T 2y1w_A           47 TDFKDKIVLDVGCGSGILSFFAAQA   71 (348)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHT
T ss_pred             ccCCcCEEEEcCCCccHHHHHHHhC
Confidence            3457789999999999999999875

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=96.31  E-value=0.0041  Score=39.86  Aligned_cols=35  Identities=9%  Similarity=-0.083  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhc--CCCeEEEeccchHHHHHHHHhh
Q 043521           31 DEAQFLSMLLKLI--NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        31 ~~g~~L~~l~~~~--~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+++..++...  ++.+|||||||+|..+..+++.
T Consensus        22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~   58 (246)
T 1y8c_A           22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK   58 (246)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC
Confidence            3456666666655  7789999999999999998875

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.31  E-value=0.0038  Score=41.05  Aligned_cols=32  Identities=13%  Similarity=0.037  Sum_probs=24.8

Q ss_pred             HHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           35 FLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        35 ~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .+...+...+..+|||||||+|..+..+++..
T Consensus        28 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~   59 (260)
T 1vl5_A           28 KLMQIAALKGNEEVLDVATGGGHVANAFAPFV   59 (260)
T ss_dssp             HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS
T ss_pred             HHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC
Confidence            33344455677899999999999999998764

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=96.30  E-value=0.0025  Score=43.44  Aligned_cols=26  Identities=15%  Similarity=0.247  Sum_probs=22.8

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+.++|||||||+|..++.+++..+.
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~   70 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGP   70 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCC
Confidence            46789999999999999999998753

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=96.29  E-value=0.0024  Score=41.14  Aligned_cols=32  Identities=13%  Similarity=0.185  Sum_probs=25.9

Q ss_pred             HHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           34 QFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        34 ~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+..++...+.++|||||||+|..+..+++.
T Consensus        33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~   64 (243)
T 3bkw_A           33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH   64 (243)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHhccccCCCEEEEEcCcCCHHHHHHHHC
Confidence            34555556667889999999999999999875

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=96.28  E-value=0.0044  Score=39.43  Aligned_cols=31  Identities=26%  Similarity=0.307  Sum_probs=23.4

Q ss_pred             HHHHHHH-hcCCCeEEEeccchHHHHHHHHhh
Q 043521           35 FLSMLLK-LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        35 ~L~~l~~-~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+..++. ..+..+|||||||+|..+..+++.
T Consensus        33 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~   64 (211)
T 3e23_A           33 TLTKFLGELPAGAKILELGCGAGYQAEAMLAA   64 (211)
T ss_dssp             HHHHHHTTSCTTCEEEESSCTTSHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCcEEEECCCCCHHHHHHHHc
Confidence            3444443 345679999999999999999875

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=96.27  E-value=0.0019  Score=44.24  Aligned_cols=29  Identities=14%  Similarity=0.214  Sum_probs=25.1

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      .+-.+|||+|||+|+.+..+|+...++|+
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~G~  104 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPRGR  104 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCCce
Confidence            34469999999999999999999888774

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=96.26  E-value=0.0035  Score=43.56  Aligned_cols=42  Identities=12%  Similarity=0.037  Sum_probs=31.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+++...+-+-..+...+..+|||||||+|..|..+++..+
T Consensus        24 fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~   65 (279)
T 3uzu_A           24 FLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLA   65 (279)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHC
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCC
Confidence            456666555555555556677999999999999999998644

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=96.25  E-value=0.0043  Score=40.27  Aligned_cols=36  Identities=6%  Similarity=-0.063  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhh
Q 043521           30 PDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        30 ~~~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +..-.....+++.   .+..+|||||||+|..+..+++.
T Consensus        76 ~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~  114 (254)
T 1xtp_A           76 DVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTK  114 (254)
T ss_dssp             HHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHH
T ss_pred             HHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHh
Confidence            3334444444443   35679999999999999988865

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=96.21  E-value=0.003  Score=42.37  Aligned_cols=39  Identities=18%  Similarity=0.179  Sum_probs=27.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+++...+.+-..+...+..+|||||||+|..+..+++.
T Consensus        13 l~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~   51 (244)
T 1qam_A           13 ITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR   51 (244)
T ss_dssp             CCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc
Confidence            445544443333333445679999999999999999875

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.21  E-value=0.0046  Score=41.77  Aligned_cols=40  Identities=10%  Similarity=0.056  Sum_probs=29.4

Q ss_pred             CCHHHHHHHHHHHHhc---CCCeEEEeccchHHHHHHHHhhCC
Q 043521           28 STPDEAQFLSMLLKLI---NAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~---~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ....+-+.+..+++..   +..+|||||||+|..+..+++..+
T Consensus        53 l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~   95 (302)
T 3hem_A           53 LEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD   95 (302)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC
Confidence            3344455666666664   445999999999999999998643

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=96.19  E-value=0.00096  Score=43.69  Aligned_cols=24  Identities=25%  Similarity=0.438  Sum_probs=21.0

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .+.++|||||||+|..+..+++.-
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~   66 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHG   66 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcC
Confidence            367899999999999999998763

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=96.18  E-value=0.0066  Score=37.34  Aligned_cols=31  Identities=13%  Similarity=0.162  Sum_probs=24.9

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+++..+  ..+..+|||||||+|..+..+++.
T Consensus        37 ~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~   67 (195)
T 3cgg_A           37 ARLIDAM--APRGAKILDAGCGQGRIGGYLSKQ   67 (195)
T ss_dssp             HHHHHHH--SCTTCEEEEETCTTTHHHHHHHHT
T ss_pred             HHHHHHh--ccCCCeEEEECCCCCHHHHHHHHC
Confidence            4566655  347789999999999999999875

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.16  E-value=0.005  Score=39.20  Aligned_cols=33  Identities=9%  Similarity=0.030  Sum_probs=24.1

Q ss_pred             HHHHHHHHh-cCCCeEEEeccchHHHHHHHHhhC
Q 043521           34 QFLSMLLKL-INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        34 ~~L~~l~~~-~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .+...+.+. .+..+|||||||+|..+..+++..
T Consensus        27 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~   60 (227)
T 1ve3_A           27 TLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG   60 (227)
T ss_dssp             HHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcC
Confidence            344444443 346799999999999999998753

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=96.16  E-value=0.0026  Score=43.29  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+.++|||||||+|+.++.+++.
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~  100 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLA  100 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHT
T ss_pred             cCCCeEEEecccccHHHHHHHHc
Confidence            46779999999999999999874

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.15  E-value=0.0034  Score=40.78  Aligned_cols=35  Identities=23%  Similarity=0.195  Sum_probs=25.4

Q ss_pred             HHHHHHHH-HhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           33 AQFLSMLL-KLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        33 g~~L~~l~-~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..++..+. ...+..+|||||||+|+.+..+++..+
T Consensus        72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~  107 (227)
T 1r18_A           72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIK  107 (227)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcc
Confidence            44454444 234456999999999999999998543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=96.15  E-value=0.0023  Score=43.57  Aligned_cols=44  Identities=14%  Similarity=0.174  Sum_probs=30.4

Q ss_pred             CCCHHHHHHHHHHH--HhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           27 LSTPDEAQFLSMLL--KLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        27 ~i~~~~g~~L~~l~--~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      -.+.....++..+-  ...+-.+|||+|||+|+.+..+|+.++++|
T Consensus        57 ~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G  102 (232)
T 3id6_C           57 FRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNG  102 (232)
T ss_dssp             TTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCC
Confidence            34444344444431  134556999999999999999999877665

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=96.14  E-value=0.004  Score=40.14  Aligned_cols=35  Identities=17%  Similarity=0.168  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHhcCCCeEEEeccc-hHHHHHHHHhhC
Q 043521           32 EAQFLSMLLKLINAKNTMEIGVY-TGYSLLYTALAI   66 (71)
Q Consensus        32 ~g~~L~~l~~~~~~k~iLEIGT~-~GySal~lA~al   66 (71)
                      ..+++.......+..+||||||| +|..++.+++..
T Consensus        43 ~~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~   78 (230)
T 3evz_A           43 ISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFF   78 (230)
T ss_dssp             HHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHH
T ss_pred             chhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhc
Confidence            34555333334567899999999 999999998763

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.14  E-value=0.0035  Score=44.05  Aligned_cols=26  Identities=19%  Similarity=-0.018  Sum_probs=22.6

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..++++|||||||+|+++.++++..+
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~  131 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHES  131 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTT
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCC
Confidence            35789999999999999999998643

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=96.14  E-value=0.0051  Score=41.82  Aligned_cols=40  Identities=15%  Similarity=0.106  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...++...+-+-..+...+..+|||||||+|..+..+++.
T Consensus        13 fl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~   52 (249)
T 3ftd_A           13 LLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH   52 (249)
T ss_dssp             CEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc
Confidence            3445544444444444456679999999999999999875

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.13  E-value=0.0077  Score=38.19  Aligned_cols=33  Identities=6%  Similarity=0.064  Sum_probs=24.4

Q ss_pred             HHHHHHHHHh-cCCCeEEEeccchHHHHHHHHhh
Q 043521           33 AQFLSMLLKL-INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        33 g~~L~~l~~~-~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..++..+... .+.++|||||||+|..++.+++.
T Consensus        48 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~   81 (205)
T 3grz_A           48 QLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL   81 (205)
T ss_dssp             HHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC
Confidence            3444444443 45679999999999999998863

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=96.13  E-value=0.0052  Score=42.10  Aligned_cols=31  Identities=10%  Similarity=0.197  Sum_probs=24.0

Q ss_pred             HHHHHHhcCC-CeEEEeccchHHHHHHHHhhC
Q 043521           36 LSMLLKLINA-KNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        36 L~~l~~~~~~-k~iLEIGT~~GySal~lA~al   66 (71)
                      |..+....++ .+|+||||++||.++.+|+.-
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~   43 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMG   43 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTT
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHhC
Confidence            4445555544 489999999999999999864

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=96.12  E-value=0.0022  Score=40.84  Aligned_cols=30  Identities=17%  Similarity=0.366  Sum_probs=24.4

Q ss_pred             HHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           39 LLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        39 l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+...+..+|||||||+|..+..+++..++
T Consensus        32 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~   61 (219)
T 3dh0_A           32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGE   61 (219)
T ss_dssp             HHTCCTTCEEEESSCTTCTTHHHHHHHHTT
T ss_pred             HhCCCCCCEEEEEecCCCHHHHHHHHHhCC
Confidence            335566779999999999999999987633

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=96.12  E-value=0.0031  Score=41.24  Aligned_cols=24  Identities=13%  Similarity=0.062  Sum_probs=21.5

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +..+|||||||+|..++++++..+
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~   97 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIAD   97 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTT
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcC
Confidence            456899999999999999998875

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=96.10  E-value=0.0051  Score=39.68  Aligned_cols=31  Identities=13%  Similarity=0.023  Sum_probs=22.6

Q ss_pred             HHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           35 FLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        35 ~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ++..+....+.++|||+|||+|..++++++.
T Consensus        45 l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~   75 (202)
T 2fpo_A           45 LFNWLAPVIVDAQCLDCFAGSGALGLEALSR   75 (202)
T ss_dssp             HHHHHHHHHTTCEEEETTCTTCHHHHHHHHT
T ss_pred             HHHHHHhhcCCCeEEEeCCCcCHHHHHHHhc
Confidence            3333333347789999999999999986654

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=96.09  E-value=0.0029  Score=42.47  Aligned_cols=22  Identities=27%  Similarity=0.197  Sum_probs=19.4

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +.++|||||||+|..+..+++.
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~   58 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN   58 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT
T ss_pred             CCCEEEEEccCCCHHHHHHHhc
Confidence            4569999999999999999875

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=96.07  E-value=0.0022  Score=41.45  Aligned_cols=26  Identities=12%  Similarity=0.089  Sum_probs=22.1

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+..+|||+|||+|..++.+++..++
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~   97 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGW   97 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCT
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCC
Confidence            35569999999999999999987654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=96.06  E-value=0.002  Score=42.69  Aligned_cols=25  Identities=20%  Similarity=0.174  Sum_probs=22.1

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+..+|||||||+|..+..+++..|
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~   60 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNP   60 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCT
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCC
Confidence            5677999999999999999998754

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=96.04  E-value=0.0029  Score=41.87  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=21.8

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +..+|||||||+|..++.+|+..++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~   73 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPE   73 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCC
Confidence            5578999999999999999987653

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=96.01  E-value=0.006  Score=42.17  Aligned_cols=38  Identities=13%  Similarity=0.142  Sum_probs=27.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCC-CeEEEeccchHHHHHHHHhhCC
Q 043521           26 MLSTPDEAQFLSMLLKLINA-KNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~-k~iLEIGT~~GySal~lA~al~   67 (71)
                      |..++-    |..+....++ .+||||||++|+.++.+|+.-+
T Consensus         6 ~~Ls~R----L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~   44 (244)
T 3gnl_A            6 EQLSKR----LEKVASYITKNERIADIGSDHAYLPCFAVKNQT   44 (244)
T ss_dssp             CCCCHH----HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTS
T ss_pred             cchhHH----HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCC
Confidence            445543    4445555554 5899999999999999998643

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=96.01  E-value=0.0044  Score=42.54  Aligned_cols=39  Identities=18%  Similarity=0.052  Sum_probs=28.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+++...+.+-..+...+..+|||||||+|..+..+++.
T Consensus        11 l~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~   49 (285)
T 1zq9_A           11 LKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK   49 (285)
T ss_dssp             ECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh
Confidence            345555554444455556779999999999999999875

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=95.98  E-value=0.0028  Score=44.96  Aligned_cols=25  Identities=28%  Similarity=0.127  Sum_probs=22.2

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .++++|||||||+|..+.++++..+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~  143 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHAS  143 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTT
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCC
Confidence            5789999999999999999998643

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=95.97  E-value=0.0034  Score=40.91  Aligned_cols=25  Identities=8%  Similarity=0.113  Sum_probs=21.5

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+..+|||+|||+|..+.++++..+
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g  100 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVG  100 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhC
Confidence            3456999999999999999998764

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=95.97  E-value=0.01  Score=37.73  Aligned_cols=32  Identities=28%  Similarity=0.204  Sum_probs=25.0

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+++..+. ..+..+|||||||+|..+..+++.
T Consensus        35 ~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~   66 (220)
T 3hnr_A           35 EDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA   66 (220)
T ss_dssp             HHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT
T ss_pred             HHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC
Confidence            35555543 347889999999999999999875

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=95.96  E-value=0.0099  Score=40.80  Aligned_cols=39  Identities=21%  Similarity=0.322  Sum_probs=28.3

Q ss_pred             CCCHHHHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhh
Q 043521           27 LSTPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+++-.++..++..   .+..+|||||||+|..++.+++.
T Consensus       103 ipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~  144 (284)
T 1nv8_A          103 VPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF  144 (284)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH
T ss_pred             ecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC
Confidence            3444455555554443   35679999999999999999987

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=95.96  E-value=0.0035  Score=43.71  Aligned_cols=24  Identities=21%  Similarity=0.054  Sum_probs=21.8

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .++++|||||||+|..+.++++..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~  117 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHP  117 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT
T ss_pred             CCCCEEEEECCCchHHHHHHHHcC
Confidence            578999999999999999999864

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=95.95  E-value=0.0038  Score=44.40  Aligned_cols=25  Identities=20%  Similarity=0.424  Sum_probs=21.9

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhh
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+.++|||||||+|..++.+++.
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~   84 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQA   84 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHT
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhc
Confidence            4466789999999999999999986

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=95.95  E-value=0.0077  Score=40.14  Aligned_cols=29  Identities=14%  Similarity=0.121  Sum_probs=22.1

Q ss_pred             HHHHHhcC--CCeEEEeccchHHHHHHHHhh
Q 043521           37 SMLLKLIN--AKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        37 ~~l~~~~~--~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..++....  +.+|||||||+|..+..+++.
T Consensus        59 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~   89 (285)
T 4htf_A           59 DRVLAEMGPQKLRVLDAGGGEGQTAIKMAER   89 (285)
T ss_dssp             HHHHHHTCSSCCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHhcCCCCCEEEEeCCcchHHHHHHHHC
Confidence            33444433  459999999999999999875

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=95.95  E-value=0.007  Score=42.12  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=24.8

Q ss_pred             HHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           35 FLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        35 ~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+.......+.++|||||||+|..++.+++.
T Consensus        29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~   59 (328)
T 1g6q_1           29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKH   59 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHT
T ss_pred             HHHhhHhhcCCCEEEEecCccHHHHHHHHHC
Confidence            3333445678899999999999999999875

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=95.93  E-value=0.006  Score=39.64  Aligned_cols=23  Identities=26%  Similarity=0.117  Sum_probs=20.3

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+..+|||||||+|..+..+++.
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~   60 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIAR   60 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTT
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHC
Confidence            56779999999999999999874

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=95.93  E-value=0.0062  Score=40.27  Aligned_cols=22  Identities=23%  Similarity=0.229  Sum_probs=19.9

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ++.+|||||||+|..+..+++.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~   75 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER   75 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc
Confidence            6789999999999999999875

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=95.91  E-value=0.0085  Score=39.94  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=21.9

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhh
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+..+|||||||+|..+..+++.
T Consensus       117 ~~~~~~~vLD~GcG~G~~~~~l~~~  141 (286)
T 3m70_A          117 KIISPCKVLDLGCGQGRNSLYLSLL  141 (286)
T ss_dssp             HHSCSCEEEEESCTTCHHHHHHHHT
T ss_pred             hccCCCcEEEECCCCCHHHHHHHHC
Confidence            4458899999999999999999875

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=95.90  E-value=0.011  Score=38.89  Aligned_cols=32  Identities=16%  Similarity=0.191  Sum_probs=23.5

Q ss_pred             HHHHHHHHhc-CCCeEEEeccchHHHHHHHHhh
Q 043521           34 QFLSMLLKLI-NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        34 ~~L~~l~~~~-~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+...+.... ++.+|||||||+|..+..+++.
T Consensus        39 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~   71 (263)
T 3pfg_A           39 DLAALVRRHSPKAASLLDVACGTGMHLRHLADS   71 (263)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTT
T ss_pred             HHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHc
Confidence            3444444433 3479999999999999999875

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=95.90  E-value=0.0049  Score=40.86  Aligned_cols=25  Identities=12%  Similarity=0.155  Sum_probs=21.0

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+..+|||||||+|..+..+|+..+
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~   47 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQ   47 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCT
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCC
Confidence            4567899999999999999996533

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=95.88  E-value=0.0076  Score=39.64  Aligned_cols=37  Identities=14%  Similarity=0.250  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHhc---CCCeEEEeccchHHHHHHHHhhC
Q 043521           30 PDEAQFLSMLLKLI---NAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        30 ~~~g~~L~~l~~~~---~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ..+.++...++...   +..+|||||||+|..+..+++..
T Consensus        44 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~   83 (273)
T 3bus_A           44 DATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR   83 (273)
T ss_dssp             HHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc
Confidence            34455666666654   56799999999999999999764

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=95.87  E-value=0.0052  Score=42.02  Aligned_cols=24  Identities=17%  Similarity=0.026  Sum_probs=21.8

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhh
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..++++|||||||+|..+.++++.
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~   96 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQH   96 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhC
Confidence            457899999999999999999987

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=95.87  E-value=0.006  Score=42.20  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=30.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+++...+.+...+...+..+|||||||+|..+..+++.
T Consensus        24 fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~   63 (299)
T 2h1r_A           24 LLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL   63 (299)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT
T ss_pred             eecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc
Confidence            3456665555555555566789999999999999999875

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=95.86  E-value=0.0037  Score=40.73  Aligned_cols=24  Identities=17%  Similarity=0.200  Sum_probs=20.7

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhh
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+.++|||||||+|..+..+++.
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~   62 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE   62 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC
Confidence            345689999999999999999875

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=95.84  E-value=0.0077  Score=40.07  Aligned_cols=39  Identities=8%  Similarity=0.127  Sum_probs=28.5

Q ss_pred             CCHHHHHHHHHHHHhc---CCCeEEEeccchHHHHHHHHhhC
Q 043521           28 STPDEAQFLSMLLKLI---NAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~---~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ....+-+.+..+++..   +..+|||||||+|..+..+++..
T Consensus        45 l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~   86 (287)
T 1kpg_A           45 LQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY   86 (287)
T ss_dssp             HHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc
Confidence            3344455666666653   45699999999999999999654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=95.83  E-value=0.015  Score=37.23  Aligned_cols=24  Identities=17%  Similarity=0.124  Sum_probs=20.7

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .+..+|||||||+|..+..+++..
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~   62 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF   62 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC
Confidence            466899999999999999998753

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=95.83  E-value=0.0091  Score=41.39  Aligned_cols=40  Identities=13%  Similarity=-0.008  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ..+++...+-+-..+...+. +|||||||+|..|..+++..
T Consensus        29 fL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~   68 (271)
T 3fut_A           29 FLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG   68 (271)
T ss_dssp             EECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT
T ss_pred             ccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC
Confidence            44566555444444444445 99999999999999999863

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=95.82  E-value=0.0063  Score=45.22  Aligned_cols=50  Identities=8%  Similarity=0.064  Sum_probs=36.6

Q ss_pred             hcCcCCCCCHHHHHHHHHHHHhc--CCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           21 MRRNHMLSTPDEAQFLSMLLKLI--NAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        21 ~~~~~~~i~~~~g~~L~~l~~~~--~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +..+...+-+....+...++...  +..+|||+|||+|..|+.+|+.++++|
T Consensus        92 ~~~G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g  143 (479)
T 2frx_A           92 HLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEG  143 (479)
T ss_dssp             HHTTSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCS
T ss_pred             HhCcEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCC
Confidence            33444445555566666666655  677999999999999999999887554

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=95.81  E-value=0.0082  Score=40.93  Aligned_cols=25  Identities=12%  Similarity=0.034  Sum_probs=21.9

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+.+|||||||+|..|+.++..-|
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p   72 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENE   72 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSC
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCC
Confidence            5688999999999999999987654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=95.81  E-value=0.0072  Score=44.73  Aligned_cols=29  Identities=21%  Similarity=0.269  Sum_probs=23.4

Q ss_pred             HHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           39 LLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        39 l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+...+..+|||||||+|+.++.+|+..+
T Consensus       237 ~l~l~~g~~VLDLGCGsG~la~~LA~~~g  265 (433)
T 1u2z_A          237 QCQLKKGDTFMDLGSGVGNCVVQAALECG  265 (433)
T ss_dssp             HTTCCTTCEEEEESCTTSHHHHHHHHHHC
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHCC
Confidence            33445677999999999999999998543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=95.80  E-value=0.0091  Score=39.24  Aligned_cols=37  Identities=8%  Similarity=0.118  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHhc-----CCCeEEEeccchHHHHHHHHhhC
Q 043521           30 PDEAQFLSMLLKLI-----NAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        30 ~~~g~~L~~l~~~~-----~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ++...++..++...     +..+|||||||+|..++.+++..
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~   87 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL   87 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhC
Confidence            45566777666543     45699999999999999988764

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=95.80  E-value=0.0091  Score=38.62  Aligned_cols=22  Identities=14%  Similarity=0.098  Sum_probs=19.2

Q ss_pred             cCCCeEEEeccchHHHHHHHHh
Q 043521           43 INAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~   64 (71)
                      .++.+|||||||+|..+.++++
T Consensus        65 ~~~~~vLDiGcG~G~~~~~l~~   86 (235)
T 3lcc_A           65 LPLGRALVPGCGGGHDVVAMAS   86 (235)
T ss_dssp             SCCEEEEEETCTTCHHHHHHCB
T ss_pred             CCCCCEEEeCCCCCHHHHHHHh
Confidence            4556999999999999999875

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=95.79  E-value=0.0057  Score=42.29  Aligned_cols=31  Identities=13%  Similarity=0.060  Sum_probs=24.0

Q ss_pred             HHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           35 FLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        35 ~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+...+...+..+|||||||+|..++.+|+.
T Consensus        36 ~il~~l~l~~g~~VLDlGcGtG~~a~~La~~   66 (261)
T 3iv6_A           36 NDIFLENIVPGSTVAVIGASTRFLIEKALER   66 (261)
T ss_dssp             HHHHTTTCCTTCEEEEECTTCHHHHHHHHHT
T ss_pred             HHHHhcCCCCcCEEEEEeCcchHHHHHHHhc
Confidence            3333445566779999999999999999874

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=95.75  E-value=0.01  Score=38.52  Aligned_cols=34  Identities=12%  Similarity=0.043  Sum_probs=24.6

Q ss_pred             HHHHHHHHh-cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           34 QFLSMLLKL-INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        34 ~~L~~l~~~-~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +.+..+... .+..+|||||||+|..+..+++..+
T Consensus        45 ~~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~   79 (245)
T 3ggd_A           45 VDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFP   79 (245)
T ss_dssp             HHHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSS
T ss_pred             HHHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCC
Confidence            333333333 4456899999999999999998654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=95.74  E-value=0.0056  Score=41.88  Aligned_cols=23  Identities=4%  Similarity=-0.216  Sum_probs=20.7

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+|++|||||||+|+.+..+++.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~   93 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY   93 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC
Confidence            47889999999999999998876

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=95.73  E-value=0.0077  Score=37.79  Aligned_cols=32  Identities=16%  Similarity=0.142  Sum_probs=23.5

Q ss_pred             HHHHHHHHhc--CCCeEEEeccchHHHHHHHHhh
Q 043521           34 QFLSMLLKLI--NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        34 ~~L~~l~~~~--~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+...+++..  ++.+|||||||+|..+..+++.
T Consensus        31 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~   64 (219)
T 3dlc_A           31 IIAENIINRFGITAGTCIDIGSGPGALSIALAKQ   64 (219)
T ss_dssp             HHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHc
Confidence            3444444443  3349999999999999999986

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=95.73  E-value=0.0045  Score=43.81  Aligned_cols=28  Identities=11%  Similarity=0.307  Sum_probs=23.5

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAIPDD   69 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al~~~   69 (71)
                      ..+..+|||||||+|..+..+++..+++
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~  108 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEH  108 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTT
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCC
Confidence            4567899999999999999999876443

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=95.73  E-value=0.007  Score=40.31  Aligned_cols=26  Identities=23%  Similarity=0.155  Sum_probs=22.0

Q ss_pred             HHHhcCCCeEEEeccchHHHHHHHHh
Q 043521           39 LLKLINAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        39 l~~~~~~k~iLEIGT~~GySal~lA~   64 (71)
                      .+...+..+|||||||+|..+..+++
T Consensus        52 ~l~~~~~~~vLDiGcG~G~~~~~l~~   77 (279)
T 3ccf_A           52 LLNPQPGEFILDLGCGTGQLTEKIAQ   77 (279)
T ss_dssp             HHCCCTTCEEEEETCTTSHHHHHHHH
T ss_pred             HhCCCCCCEEEEecCCCCHHHHHHHh
Confidence            34456778999999999999999987

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=95.71  E-value=0.0062  Score=42.74  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=21.9

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhh
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+.++|||||||+|..++.+++.
T Consensus        61 ~~~~~~~VLDiGcGtG~ls~~la~~   85 (340)
T 2fyt_A           61 HIFKDKVVLDVGCGTGILSMFAAKA   85 (340)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHT
T ss_pred             hhcCCCEEEEeeccCcHHHHHHHHc
Confidence            3467789999999999999999975

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=95.70  E-value=0.012  Score=39.31  Aligned_cols=24  Identities=8%  Similarity=0.130  Sum_probs=20.9

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .+..+|||||||+|..+..+++..
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~  104 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKF  104 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHh
Confidence            466799999999999999998764

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=95.69  E-value=0.0075  Score=41.98  Aligned_cols=25  Identities=16%  Similarity=0.015  Sum_probs=22.1

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ..++++|||||||+|..+.++++..
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~   99 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHP   99 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTST
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcC
Confidence            3578999999999999999999864

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=95.69  E-value=0.0082  Score=40.96  Aligned_cols=35  Identities=9%  Similarity=-0.113  Sum_probs=22.9

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHh
Q 043521           29 TPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        29 ~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~   64 (71)
                      ++...+.+-..+...+..+|||||||+|+.|. +++
T Consensus         6 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~   40 (252)
T 1qyr_A            6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG   40 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh
Confidence            33333333333344455689999999999999 665

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=95.68  E-value=0.013  Score=38.53  Aligned_cols=34  Identities=26%  Similarity=0.303  Sum_probs=25.5

Q ss_pred             HHHHHHHHh--cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           34 QFLSMLLKL--INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        34 ~~L~~l~~~--~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+...+.+.  .+..+|||||||+|..+..+++.++
T Consensus        73 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~  108 (269)
T 1p91_A           73 AIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALP  108 (269)
T ss_dssp             HHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCT
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCC
Confidence            344444443  4667999999999999999998764

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=95.64  E-value=0.0056  Score=43.17  Aligned_cols=25  Identities=16%  Similarity=0.183  Sum_probs=22.2

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +.++|||||||+|..+..+++..|.
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~  227 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPS  227 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCC
Confidence            4679999999999999999998764

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=95.64  E-value=0.0062  Score=42.81  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=22.5

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhh
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+.++|||||||+|..++.+++.
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~   87 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKA   87 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHT
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHC
Confidence            4578899999999999999999986

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=95.63  E-value=0.0025  Score=43.24  Aligned_cols=37  Identities=8%  Similarity=0.052  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           32 EAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        32 ~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ...++..++...+..+|||+|||+|..++.+++.++.
T Consensus        71 ~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~  107 (274)
T 3ajd_A           71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKN  107 (274)
T ss_dssp             GGGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTT
T ss_pred             HHHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCC
Confidence            3455555566667789999999999999999998764

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=95.62  E-value=0.006  Score=38.88  Aligned_cols=31  Identities=6%  Similarity=-0.146  Sum_probs=24.1

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHH
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTA   63 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA   63 (71)
                      ..++..+....+..+|||||||+|..+..++
T Consensus        56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~   86 (215)
T 2zfu_A           56 DRIARDLRQRPASLVVADFGCGDCRLASSIR   86 (215)
T ss_dssp             HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC
T ss_pred             HHHHHHHhccCCCCeEEEECCcCCHHHHHhh
Confidence            3466666655667899999999999988764

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=95.62  E-value=0.0045  Score=38.03  Aligned_cols=25  Identities=12%  Similarity=-0.011  Sum_probs=21.4

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhh
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+.++|||||||+|..+.++++.
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~   38 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEF   38 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTT
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhh
Confidence            4556679999999999999999875

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=95.61  E-value=0.0066  Score=39.06  Aligned_cols=30  Identities=27%  Similarity=0.211  Sum_probs=23.6

Q ss_pred             HHHHHHHhcCCCeEEEeccchHHHHHHHHh
Q 043521           35 FLSMLLKLINAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        35 ~L~~l~~~~~~k~iLEIGT~~GySal~lA~   64 (71)
                      .+..+.+..+.++|||||||+|..+..+++
T Consensus        38 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~   67 (219)
T 1vlm_A           38 ELQAVKCLLPEGRGVEIGVGTGRFAVPLKI   67 (219)
T ss_dssp             HHHHHHHHCCSSCEEEETCTTSTTHHHHTC
T ss_pred             HHHHHHHhCCCCcEEEeCCCCCHHHHHHHH
Confidence            344555666688999999999999988764

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=95.59  E-value=0.0055  Score=39.85  Aligned_cols=25  Identities=16%  Similarity=0.029  Sum_probs=21.7

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .++.+|||||||+|..+..+++..|
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~   56 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYG   56 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHC
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCC
Confidence            4567999999999999999998754

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=95.59  E-value=0.0027  Score=43.67  Aligned_cols=25  Identities=20%  Similarity=0.104  Sum_probs=22.2

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ++.+|||||||+|..+..+++..|.
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~  193 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHED  193 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCC
Confidence            4679999999999999999998764

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.54  E-value=0.011  Score=36.98  Aligned_cols=32  Identities=13%  Similarity=-0.019  Sum_probs=23.8

Q ss_pred             HHHHHHHh-cCCCeEEEeccchHHHHHHHHhhC
Q 043521           35 FLSMLLKL-INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        35 ~L~~l~~~-~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      +...+.+. .+..+|||||||+|..+..+++.-
T Consensus        32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~   64 (215)
T 2pxx_A           32 FRALLEPELRPEDRILVLGCGNSALSYELFLGG   64 (215)
T ss_dssp             HHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTT
T ss_pred             HHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcC
Confidence            44444433 456799999999999999998763

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=95.53  E-value=0.0076  Score=42.51  Aligned_cols=26  Identities=15%  Similarity=0.160  Sum_probs=22.7

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+.++|||||||+|..+..+++..|.
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~  225 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPT  225 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCC
Confidence            34689999999999999999998764

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=95.51  E-value=0.0067  Score=38.22  Aligned_cols=32  Identities=16%  Similarity=0.034  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHhcCCCeEEEeccchHHHHHHHH
Q 043521           32 EAQFLSMLLKLINAKNTMEIGVYTGYSLLYTA   63 (71)
Q Consensus        32 ~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA   63 (71)
                      ..+++..+....+..+|||||||+|..++.++
T Consensus        11 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~   42 (209)
T 2p8j_A           11 LYRFLKYCNESNLDKTVLDCGAGGDLPPLSIF   42 (209)
T ss_dssp             HHHHHHHHHHSSSCSEEEEESCCSSSCTHHHH
T ss_pred             HHHHHHHHhccCCCCEEEEECCCCCHHHHHHH
Confidence            45677777777778999999999998754443

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=95.51  E-value=0.014  Score=37.47  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=23.6

Q ss_pred             HHHHHHHHhcC-CCeEEEeccchHHHHHHHHhh
Q 043521           34 QFLSMLLKLIN-AKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        34 ~~L~~l~~~~~-~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+...+.+..+ .++|||||||+|..+..+++.
T Consensus        22 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~   54 (243)
T 3d2l_A           22 EWVAWVLEQVEPGKRIADIGCGTGTATLLLADH   54 (243)
T ss_dssp             HHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT
T ss_pred             HHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC
Confidence            34444444443 479999999999999998864

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=95.50  E-value=0.0034  Score=42.65  Aligned_cols=25  Identities=12%  Similarity=-0.144  Sum_probs=20.6

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ..+..+|||||||+|..++.+|...
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~  140 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSA  140 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTT
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhc
Confidence            3566789999999999999997443

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=95.49  E-value=0.004  Score=43.30  Aligned_cols=26  Identities=19%  Similarity=0.121  Sum_probs=22.5

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+..+|||||||+|..+..+++..|.
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~  208 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPG  208 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTT
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCC
Confidence            34679999999999999999998763

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=95.48  E-value=0.0037  Score=46.58  Aligned_cols=47  Identities=15%  Similarity=0.140  Sum_probs=36.2

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +...+-++...++..++...+..+|||+|||+|.-|+.+|+.+++.|
T Consensus        81 G~~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g  127 (464)
T 3m6w_A           81 GLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKG  127 (464)
T ss_dssp             TSEEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCS
T ss_pred             CeEEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCC
Confidence            33344444466677777777788999999999999999999887654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=95.43  E-value=0.0071  Score=41.89  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=22.3

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+..+|||||||+|..+..+++..|
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~  205 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAP  205 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC
Confidence            4678999999999999999998875

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=95.42  E-value=0.013  Score=40.10  Aligned_cols=22  Identities=18%  Similarity=0.149  Sum_probs=20.5

Q ss_pred             CeEEEeccchHHHHHHHHhhCC
Q 043521           46 KNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        46 k~iLEIGT~~GySal~lA~al~   67 (71)
                      ++|||||||+|..+..+++..|
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p  190 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEP  190 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCT
T ss_pred             CEEEEeCCCchHHHHHHHHHCC
Confidence            8999999999999999998875

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=95.41  E-value=0.0099  Score=38.56  Aligned_cols=33  Identities=15%  Similarity=0.159  Sum_probs=24.6

Q ss_pred             HHHHHHHHh---cCCCeEEEeccchHHHHHHHHhhC
Q 043521           34 QFLSMLLKL---INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        34 ~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      +....+++.   .+..+|||||||+|..+..+++..
T Consensus        42 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~   77 (266)
T 3ujc_A           42 EATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY   77 (266)
T ss_dssp             HHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc
Confidence            334444444   456699999999999999999864

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=95.41  E-value=0.016  Score=41.67  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=30.0

Q ss_pred             CCHHHHHHHHHHHHhc-----CCCeEEEeccchHHHHHHHHhh
Q 043521           28 STPDEAQFLSMLLKLI-----NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~-----~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+....++..+....     +..+|||+|||+|+.++.+++.
T Consensus       212 ~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~  254 (381)
T 3dmg_A          212 VDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM  254 (381)
T ss_dssp             CCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc
Confidence            4566666777776654     5679999999999999999875

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=95.39  E-value=0.0096  Score=41.74  Aligned_cols=26  Identities=19%  Similarity=0.098  Sum_probs=23.4

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .++++|||||||+|..+..+++..|.
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~  203 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKE  203 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTT
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCC
Confidence            68899999999999999999987663

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=95.36  E-value=0.025  Score=37.83  Aligned_cols=33  Identities=12%  Similarity=0.138  Sum_probs=24.3

Q ss_pred             HHHHHHHHHh-cCCCeEEEeccchHHHHHHHHhh
Q 043521           33 AQFLSMLLKL-INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        33 g~~L~~l~~~-~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+..+.+. .+.++|||+|||+|..++.+++.
T Consensus       108 ~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~  141 (254)
T 2nxc_A          108 RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL  141 (254)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh
Confidence            3344444443 45679999999999999998864

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=95.32  E-value=0.013  Score=41.12  Aligned_cols=47  Identities=15%  Similarity=0.069  Sum_probs=32.4

Q ss_pred             hhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           20 GMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        20 ~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ....+..-.++...+++..++...+..+|||+|||+|..++.+++..
T Consensus        15 ~~~~g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~   61 (421)
T 2ih2_A           15 PRSLGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAH   61 (421)
T ss_dssp             ------CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHH
T ss_pred             cccCceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHh
Confidence            34445556677777777766655556799999999999999999764

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=95.32  E-value=0.0088  Score=43.52  Aligned_cols=45  Identities=11%  Similarity=0.194  Sum_probs=34.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      ..+-+....++..++...+..+|||+|||+|..++.+++.+++.+
T Consensus       241 ~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~  285 (450)
T 2yxl_A          241 IIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKG  285 (450)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCS
T ss_pred             EEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCC
Confidence            334445566777777777778999999999999999999886533

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=95.29  E-value=0.014  Score=37.09  Aligned_cols=23  Identities=22%  Similarity=0.199  Sum_probs=20.3

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+..+|||||||+|..+..+++.
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~   51 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK   51 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC
Confidence            46679999999999999999875

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=95.28  E-value=0.0077  Score=41.59  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=22.1

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+..+|||||||+|..+..+++..|
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~  206 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAP  206 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCC
Confidence            4567999999999999999998865

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=95.27  E-value=0.0091  Score=38.63  Aligned_cols=23  Identities=17%  Similarity=0.052  Sum_probs=20.2

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+..+|||+|||+|..+..+++.
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~   46 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL   46 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc
Confidence            45679999999999999999875

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=95.26  E-value=0.011  Score=38.05  Aligned_cols=31  Identities=10%  Similarity=0.286  Sum_probs=23.1

Q ss_pred             HHHHHHHh-cCCCeEEEeccchHHHHHHHHhh
Q 043521           35 FLSMLLKL-INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        35 ~L~~l~~~-~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ++..+... .+..+|||||||+|..+..+++.
T Consensus        43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~   74 (242)
T 3l8d_A           43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT   74 (242)
T ss_dssp             HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc
Confidence            33333333 35679999999999999999875

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=95.24  E-value=0.02  Score=38.72  Aligned_cols=38  Identities=11%  Similarity=0.105  Sum_probs=28.2

Q ss_pred             CHHHHHHHHHHHHhc---CCCeEEEeccchHHHHHHHHhhC
Q 043521           29 TPDEAQFLSMLLKLI---NAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        29 ~~~~g~~L~~l~~~~---~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ...+-+.+..++...   +..+|||||||+|..+..+++..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~  112 (318)
T 2fk8_A           72 EEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF  112 (318)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC
Confidence            344455666666654   45699999999999999998763

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=95.21  E-value=0.016  Score=47.09  Aligned_cols=35  Identities=11%  Similarity=0.028  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      -+++..+++..++++|||||||+|+.+..+++..+
T Consensus       710 le~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~  744 (950)
T 3htx_A          710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPT  744 (950)
T ss_dssp             HHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCC
T ss_pred             HHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCC
Confidence            44555666667899999999999999999998764

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=95.19  E-value=0.0048  Score=45.87  Aligned_cols=49  Identities=10%  Similarity=0.060  Sum_probs=37.4

Q ss_pred             cCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           22 RRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        22 ~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      ..+...+-++...++..++...+..+|||+||++|.-|+.+|+.+++.|
T Consensus        83 ~~G~~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g  131 (456)
T 3m4x_A           83 QAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKG  131 (456)
T ss_dssp             HTTSCEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCS
T ss_pred             hCCcEEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCC
Confidence            3444445555567777777777788999999999999999999877544

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=95.15  E-value=0.013  Score=37.06  Aligned_cols=23  Identities=17%  Similarity=0.081  Sum_probs=20.6

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+..+|||||||+|..+..+++.
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~   53 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN   53 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc
Confidence            46789999999999999999875

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=95.13  E-value=0.009  Score=42.48  Aligned_cols=28  Identities=11%  Similarity=-0.013  Sum_probs=22.7

Q ss_pred             HHHHhcCCCeEEEeccchH-HHHHHHHhh
Q 043521           38 MLLKLINAKNTMEIGVYTG-YSLLYTALA   65 (71)
Q Consensus        38 ~l~~~~~~k~iLEIGT~~G-ySal~lA~a   65 (71)
                      .+++..++++|||||||+| ++++.+|+.
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~  144 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHV  144 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHT
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHc
Confidence            3567788999999999986 677888764

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=95.12  E-value=0.0088  Score=42.02  Aligned_cols=26  Identities=23%  Similarity=0.220  Sum_probs=22.8

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+..+|||||||+|..+..+++..|.
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~  226 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPG  226 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCC
Confidence            45789999999999999999998763

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=95.11  E-value=0.012  Score=41.16  Aligned_cols=26  Identities=15%  Similarity=-0.008  Sum_probs=22.2

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..++++|||||||+|..+..+++..+
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~  139 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKS  139 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTT
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCC
Confidence            35789999999999999999997643

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=95.08  E-value=0.011  Score=40.18  Aligned_cols=23  Identities=13%  Similarity=0.091  Sum_probs=20.2

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+..+|||||||+|..+..+++.
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~  138 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRR  138 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHH
T ss_pred             CCCCEEEEecCCCCHHHHHHHHH
Confidence            34679999999999999999975

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=95.08  E-value=0.014  Score=40.10  Aligned_cols=24  Identities=17%  Similarity=0.178  Sum_probs=22.0

Q ss_pred             CCeEEEeccchHHHHHHHHhhCCC
Q 043521           45 AKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        45 ~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +++|||||||+|..+..+++..|.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~  203 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQ  203 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTT
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCC
Confidence            789999999999999999998764

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=95.00  E-value=0.015  Score=41.90  Aligned_cols=45  Identities=13%  Similarity=0.051  Sum_probs=35.9

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +...+-++...++..++...+..+|||+|||+|..+..+++.++.
T Consensus       226 G~~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~  270 (429)
T 1sqg_A          226 GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE  270 (429)
T ss_dssp             TSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT
T ss_pred             CCeEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCC
Confidence            344455666777777777777789999999999999999998763

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=94.99  E-value=0.016  Score=39.96  Aligned_cols=25  Identities=24%  Similarity=0.064  Sum_probs=21.9

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .++++|||||||+|..+..+++..+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~  113 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDS  113 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTT
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCC
Confidence            4778999999999999999998643

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=94.96  E-value=0.014  Score=43.61  Aligned_cols=24  Identities=25%  Similarity=0.115  Sum_probs=19.8

Q ss_pred             cCCCeEEEeccc------hHHHHHHHHhhC
Q 043521           43 INAKNTMEIGVY------TGYSLLYTALAI   66 (71)
Q Consensus        43 ~~~k~iLEIGT~------~GySal~lA~al   66 (71)
                      .++.+|||||||      +|.+++.+++..
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~  244 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSF  244 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHh
Confidence            378899999999      777888888764

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=94.93  E-value=0.0029  Score=42.10  Aligned_cols=37  Identities=19%  Similarity=0.089  Sum_probs=25.5

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           29 TPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        29 ~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ++...+.+...+...+..+|||||||+|..+..+++.
T Consensus        14 ~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~   50 (245)
T 1yub_A           14 SEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI   50 (245)
T ss_dssp             CTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh
Confidence            3333333333344445668999999999999999875

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=94.92  E-value=0.022  Score=37.62  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=19.8

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+..+|||||||+|..+..+++.
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~   85 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA   85 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC
Confidence            56779999999999988888764

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.87  E-value=0.014  Score=41.81  Aligned_cols=26  Identities=15%  Similarity=0.004  Sum_probs=22.1

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+..+|||+|||+|..++.+++..|
T Consensus       220 ~~~~~~VLDlGcG~G~~s~~la~~~p  245 (375)
T 4dcm_A          220 ENLEGEIVDLGCGNGVIGLTLLDKNP  245 (375)
T ss_dssp             CSCCSEEEEETCTTCHHHHHHHHHCT
T ss_pred             ccCCCeEEEEeCcchHHHHHHHHHCC
Confidence            34447999999999999999999865

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=94.86  E-value=0.017  Score=39.46  Aligned_cols=24  Identities=13%  Similarity=-0.006  Sum_probs=21.3

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .++++|||||+|+|..+..+++..
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~   97 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHP   97 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCT
T ss_pred             CCCCEEEEECCchHHHHHHHHhCC
Confidence            478999999999999999998763

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=94.82  E-value=0.0055  Score=43.06  Aligned_cols=47  Identities=15%  Similarity=0.200  Sum_probs=34.6

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +.+.+-++...++..++...+..+|||+|+++|..|+.+|+.+++.|
T Consensus        82 G~~~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g  128 (309)
T 2b9e_A           82 GHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQG  128 (309)
T ss_dssp             TSEEECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCS
T ss_pred             CeEEEECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCC
Confidence            33444444456666666666777999999999999999999876544

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=94.80  E-value=0.02  Score=38.48  Aligned_cols=22  Identities=9%  Similarity=-0.091  Sum_probs=19.3

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ++.+|||||||+|..+..+++.
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~  103 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL  103 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT
T ss_pred             CCCcEEEEeccCCHHHHHHHHc
Confidence            4459999999999999999875

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=94.80  E-value=0.014  Score=41.09  Aligned_cols=22  Identities=23%  Similarity=0.080  Sum_probs=19.2

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +.++|||||||+|+.|.++++.
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~  106 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN  106 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT
T ss_pred             cccEEEecCCCccHHHHHHHhC
Confidence            4569999999999999998874

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=94.79  E-value=0.018  Score=41.85  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=20.8

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhh
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+-++|||||||+|..+++.|++
T Consensus        81 ~~~~k~VLDvG~GtGiLs~~Aa~a  104 (376)
T 4hc4_A           81 ALRGKTVLDVGAGTGILSIFCAQA  104 (376)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT
T ss_pred             hcCCCEEEEeCCCccHHHHHHHHh
Confidence            457789999999999999988875

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=94.77  E-value=0.02  Score=37.65  Aligned_cols=32  Identities=16%  Similarity=0.157  Sum_probs=24.9

Q ss_pred             HHHHHHHHhc---CCCeEEEeccchHHHHHHHHhh
Q 043521           34 QFLSMLLKLI---NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        34 ~~L~~l~~~~---~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +++..++...   ++.+|||+|||+|..++.+++.
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~   72 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLL   72 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHH
Confidence            5555555443   4569999999999999999876

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=94.73  E-value=0.018  Score=43.07  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=21.2

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhh
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+|-+|||||||.|..+.+||+.
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~   87 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK   87 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC
Confidence            357789999999999999999974

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=94.70  E-value=0.016  Score=39.25  Aligned_cols=35  Identities=11%  Similarity=-0.041  Sum_probs=26.6

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+.+..+....+.++|||+|||+|..++.+|+..+
T Consensus       108 ~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~  142 (272)
T 3a27_A          108 EERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSK  142 (272)
T ss_dssp             HHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTC
T ss_pred             HHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCC
Confidence            34444444455667999999999999999998764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=94.64  E-value=0.019  Score=39.60  Aligned_cols=24  Identities=17%  Similarity=-0.061  Sum_probs=21.4

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .++++|||||||.|..+..+++..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~  117 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHG  117 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCC
Confidence            578899999999999999999763

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=94.63  E-value=0.029  Score=38.94  Aligned_cols=25  Identities=16%  Similarity=0.102  Sum_probs=22.3

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+.++|||||||+|..+..+++..|
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p  213 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFP  213 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCT
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCC
Confidence            4567999999999999999999876

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=94.49  E-value=0.023  Score=40.53  Aligned_cols=24  Identities=21%  Similarity=0.130  Sum_probs=20.9

Q ss_pred             CCC--eEEEeccchHHHHHHHHhhCC
Q 043521           44 NAK--NTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        44 ~~k--~iLEIGT~~GySal~lA~al~   67 (71)
                      +++  +|||||+|.|..+.++++..|
T Consensus        87 ~p~~~rVLdIG~G~G~la~~la~~~p  112 (317)
T 3gjy_A           87 DASKLRITHLGGGACTMARYFADVYP  112 (317)
T ss_dssp             CGGGCEEEEESCGGGHHHHHHHHHST
T ss_pred             CCCCCEEEEEECCcCHHHHHHHHHCC
Confidence            455  999999999999999998665

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=94.48  E-value=0.014  Score=40.65  Aligned_cols=34  Identities=21%  Similarity=0.188  Sum_probs=25.2

Q ss_pred             HHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           34 QFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        34 ~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +++...+......+|||||||+|..++++++..|
T Consensus       186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~  219 (343)
T 2pjd_A          186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSP  219 (343)
T ss_dssp             HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCT
T ss_pred             HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCC
Confidence            3333333334567999999999999999998765

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=94.47  E-value=0.032  Score=37.82  Aligned_cols=21  Identities=19%  Similarity=0.199  Sum_probs=18.5

Q ss_pred             CCCeEEEeccchHHHHHHHHh
Q 043521           44 NAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~   64 (71)
                      ++.+|||||||+|..+..+++
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~   54 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKK   54 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHh
Confidence            678999999999999998886

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=94.43  E-value=0.02  Score=39.15  Aligned_cols=24  Identities=17%  Similarity=0.015  Sum_probs=21.4

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .++++|||||+|.|..+..+++..
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~  100 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYK  100 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcC
Confidence            478899999999999999998764

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=94.42  E-value=0.026  Score=39.09  Aligned_cols=25  Identities=16%  Similarity=0.197  Sum_probs=22.3

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+..+|||||||+|..+..+++..|
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p  211 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFP  211 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCC
Confidence            4568999999999999999998876

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=94.34  E-value=0.045  Score=37.08  Aligned_cols=25  Identities=20%  Similarity=0.222  Sum_probs=22.3

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+..+|||||||+|..+..+++..|
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p  188 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP  188 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC
Confidence            5668999999999999999998875

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=94.31  E-value=0.077  Score=37.05  Aligned_cols=25  Identities=16%  Similarity=0.175  Sum_probs=22.1

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +.++|||||||+|..+..+++..|.
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~  233 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPL  233 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCC
Confidence            4679999999999999999988763

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=94.29  E-value=0.085  Score=38.45  Aligned_cols=42  Identities=14%  Similarity=0.132  Sum_probs=30.9

Q ss_pred             cCCCCCHHHHHHHHHHHH-hcCCCeEEEeccchHHHHHHHHhh
Q 043521           24 NHMLSTPDEAQFLSMLLK-LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        24 ~~~~i~~~~g~~L~~l~~-~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+..+.+.+.+...+. ..+.++|||+|||+|..++.+|+.
T Consensus       269 ~F~q~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~  311 (425)
T 2jjq_A          269 SFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKR  311 (425)
T ss_dssp             SCCCSBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHT
T ss_pred             cccccCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHc
Confidence            455666666655444443 556679999999999999999975

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=94.28  E-value=0.051  Score=35.73  Aligned_cols=31  Identities=13%  Similarity=0.191  Sum_probs=23.7

Q ss_pred             HHHHHHHHhcC-CCeEEEeccchH-HHHHHHHh
Q 043521           34 QFLSMLLKLIN-AKNTMEIGVYTG-YSLLYTAL   64 (71)
Q Consensus        34 ~~L~~l~~~~~-~k~iLEIGT~~G-ySal~lA~   64 (71)
                      .+-..+.+..+ +.+|||||||.| .-|.+|++
T Consensus        24 ~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~   56 (153)
T 2k4m_A           24 DLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRK   56 (153)
T ss_dssp             HHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcEEEEccCCChHHHHHHHH
Confidence            44445555655 469999999999 59999986

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=94.21  E-value=0.061  Score=37.84  Aligned_cols=32  Identities=22%  Similarity=0.243  Sum_probs=24.1

Q ss_pred             HHHHHHHH-hcCCCeEEEeccchHHHHHHHHhh
Q 043521           34 QFLSMLLK-LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        34 ~~L~~l~~-~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +++..+++ ..+.++|||+|||+|..++.+|+.
T Consensus       142 ~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~  174 (332)
T 2igt_A          142 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAA  174 (332)
T ss_dssp             HHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc
Confidence            34555554 235679999999999999999874

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=94.06  E-value=0.0095  Score=38.71  Aligned_cols=23  Identities=17%  Similarity=0.195  Sum_probs=18.9

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+.++|||||||+|..+..+++.
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~   77 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACE   77 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGG
T ss_pred             cCCCEEEEECCCccHHHHHHhhc
Confidence            45578999999999988887754

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=94.02  E-value=0.018  Score=36.41  Aligned_cols=19  Identities=32%  Similarity=0.438  Sum_probs=16.6

Q ss_pred             CCCeEEEeccchHHHHHHH
Q 043521           44 NAKNTMEIGVYTGYSLLYT   62 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~l   62 (71)
                      +..+|||||||+|..+..+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l   54 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL   54 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC
T ss_pred             CCCeEEEECCCCCHhHHhC
Confidence            6679999999999988765

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=93.98  E-value=0.035  Score=37.62  Aligned_cols=24  Identities=13%  Similarity=-0.115  Sum_probs=20.9

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +.++|||+|||+|..++.+|+.-+
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~  148 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGK  148 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTC
T ss_pred             CCCEEEEecccCCHHHHHHHHhCC
Confidence            467999999999999999998644

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=93.89  E-value=0.039  Score=38.30  Aligned_cols=26  Identities=15%  Similarity=0.114  Sum_probs=22.9

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+..+|||||||+|..+..+++..|.
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~  217 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPH  217 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCC
Confidence            46789999999999999999998763

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=93.83  E-value=0.017  Score=38.87  Aligned_cols=20  Identities=20%  Similarity=0.077  Sum_probs=15.5

Q ss_pred             CCCeEEEeccchHHHHHHHH
Q 043521           44 NAKNTMEIGVYTGYSLLYTA   63 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA   63 (71)
                      +..+|||||||+|..+..++
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l   71 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQIL   71 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHH
Confidence            44689999999997766543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=93.68  E-value=0.084  Score=37.36  Aligned_cols=40  Identities=15%  Similarity=0.021  Sum_probs=31.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+.+...+.+..++ ..+..+|||+|||+|..++.+|...+
T Consensus       201 ~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~  240 (373)
T 3tm4_A          201 HLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY  240 (373)
T ss_dssp             CCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC
T ss_pred             CccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC
Confidence            34566666666666 66778999999999999999997644

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=93.57  E-value=0.025  Score=38.56  Aligned_cols=33  Identities=6%  Similarity=0.012  Sum_probs=25.5

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+++...+...+..+|||+|||+|..++.+|+.
T Consensus        72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~  104 (258)
T 2r6z_A           72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL  104 (258)
T ss_dssp             -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT
T ss_pred             hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh
Confidence            455555555555679999999999999999974

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=93.52  E-value=0.04  Score=38.83  Aligned_cols=31  Identities=23%  Similarity=0.124  Sum_probs=23.0

Q ss_pred             HHHHHHHhc---CCCeEEEeccchHHHHHHHHhh
Q 043521           35 FLSMLLKLI---NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        35 ~L~~l~~~~---~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +...++...   +..+|||||||+|..+..+++.
T Consensus        95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~  128 (416)
T 4e2x_A           95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA  128 (416)
T ss_dssp             HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT
T ss_pred             HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc
Confidence            344444443   4569999999999999999864

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=93.51  E-value=0.021  Score=38.19  Aligned_cols=20  Identities=20%  Similarity=0.275  Sum_probs=15.8

Q ss_pred             CCCeEEEeccchHHHHHHHH
Q 043521           44 NAKNTMEIGVYTGYSLLYTA   63 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA   63 (71)
                      +..+|||||||+|..++.++
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~   90 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSA   90 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTG
T ss_pred             CCCeEEEECCCcChHHHHhh
Confidence            66899999999999554444

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=93.46  E-value=0.054  Score=40.09  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.2

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+.++|||||||+|..++.+++.
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~  179 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA  179 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT
T ss_pred             cCCCEEEEecCcccHHHHHHHHc
Confidence            46789999999999999999873

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=93.22  E-value=0.15  Score=35.90  Aligned_cols=41  Identities=12%  Similarity=-0.008  Sum_probs=27.7

Q ss_pred             CCCCCHHHHHHHH-HHHHhc--CCCeEEEeccchHHHHHHHHhh
Q 043521           25 HMLSTPDEAQFLS-MLLKLI--NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        25 ~~~i~~~~g~~L~-~l~~~~--~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..++.+.+.+-+. ..+...  +.++|||+|||+|..++.+|+.
T Consensus       191 F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~  234 (369)
T 3bt7_A          191 FTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN  234 (369)
T ss_dssp             CCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG
T ss_pred             eecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc
Confidence            4445555544443 333332  2478999999999999999975

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=93.14  E-value=0.032  Score=39.15  Aligned_cols=26  Identities=12%  Similarity=-0.090  Sum_probs=23.2

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+.++|||||+|+|..+..+++..|.
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~  203 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPG  203 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSS
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCC
Confidence            56689999999999999999998874

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=93.03  E-value=0.13  Score=35.66  Aligned_cols=40  Identities=23%  Similarity=0.035  Sum_probs=30.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .+.+...+.+..++...+..+|||+|||+|..++.+|...
T Consensus       186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~  225 (354)
T 3tma_A          186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTL  225 (354)
T ss_dssp             SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhh
Confidence            3455555666666666677899999999999999998854

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=92.96  E-value=0.13  Score=36.97  Aligned_cols=30  Identities=30%  Similarity=0.375  Sum_probs=25.0

Q ss_pred             HHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           38 MLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        38 ~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..++..+..+|||+|||+|..++.+|+.++
T Consensus        41 ~~l~~~~~~~VLDl~aGtG~~~l~~a~~~~   70 (378)
T 2dul_A           41 VLLNILNPKIVLDALSATGIRGIRFALETP   70 (378)
T ss_dssp             HHHHHHCCSEEEESSCTTSHHHHHHHHHSS
T ss_pred             HHHHHcCCCEEEECCCchhHHHHHHHHhCC
Confidence            344455788999999999999999999765

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=92.89  E-value=0.067  Score=38.67  Aligned_cols=40  Identities=10%  Similarity=0.038  Sum_probs=27.3

Q ss_pred             CCCCHHHH-HHHHHHHHh---cCCCeEEEeccchHHHHHHHHhh
Q 043521           26 MLSTPDEA-QFLSMLLKL---INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        26 ~~i~~~~g-~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ....+... .++..++..   .+..+|||+|||+|..++.+|+.
T Consensus       264 ~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~  307 (433)
T 1uwv_A          264 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ  307 (433)
T ss_dssp             CCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT
T ss_pred             cccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh
Confidence            34444433 444444433   34579999999999999999975

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=92.80  E-value=0.097  Score=36.31  Aligned_cols=44  Identities=14%  Similarity=0.108  Sum_probs=31.0

Q ss_pred             cCCCCCHHHHHHHHHHHHh----cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           24 NHMLSTPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        24 ~~~~i~~~~g~~L~~l~~~----~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +..-.++....++..++..    .+..+|||+|||+|..++.+++.++
T Consensus       106 g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~  153 (344)
T 2f8l_A          106 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLE  153 (344)
T ss_dssp             GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHH
T ss_pred             CcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHH
Confidence            3333555666666655542    2456999999999999999987765

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=92.71  E-value=0.11  Score=36.84  Aligned_cols=27  Identities=15%  Similarity=0.178  Sum_probs=22.8

Q ss_pred             HHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           39 LLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        39 l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +....+.++|||+|||+|..++.+|+.
T Consensus       215 l~~~~~~~~VLDl~cG~G~~sl~la~~  241 (396)
T 3c0k_A          215 TRRYVENKRVLNCFSYTGGFAVSALMG  241 (396)
T ss_dssp             HHHHCTTCEEEEESCTTCSHHHHHHHT
T ss_pred             HHHhhCCCeEEEeeccCCHHHHHHHHC
Confidence            344467889999999999999999975

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=92.50  E-value=0.1  Score=36.67  Aligned_cols=24  Identities=13%  Similarity=0.166  Sum_probs=19.8

Q ss_pred             HHhcCCCeEEEeccchHHHHHHHH
Q 043521           40 LKLINAKNTMEIGVYTGYSLLYTA   63 (71)
Q Consensus        40 ~~~~~~k~iLEIGT~~GySal~lA   63 (71)
                      .....|.+|||||||+|.-++.+.
T Consensus       101 ~~~~~p~~VLDlGCG~gpLal~~~  124 (253)
T 3frh_A          101 FSAETPRRVLDIACGLNPLALYER  124 (253)
T ss_dssp             TSSCCCSEEEEETCTTTHHHHHHT
T ss_pred             hcCCCCCeEEEecCCccHHHHHhc
Confidence            333579999999999999888765

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=92.29  E-value=0.065  Score=36.64  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=19.0

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +..+|||||||+|..+..+++.
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~   95 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR   95 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc
Confidence            3458999999999999998874

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=92.28  E-value=0.12  Score=35.16  Aligned_cols=36  Identities=8%  Similarity=0.074  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHh----cCCCeEEEeccch---HHHHHHHHhhCC
Q 043521           32 EAQFLSMLLKL----INAKNTMEIGVYT---GYSLLYTALAIP   67 (71)
Q Consensus        32 ~g~~L~~l~~~----~~~k~iLEIGT~~---GySal~lA~al~   67 (71)
                      ...++..+++.    .+.++|||||||+   |..+..+++..|
T Consensus        61 ~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p  103 (274)
T 2qe6_A           61 NRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNP  103 (274)
T ss_dssp             HHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCT
T ss_pred             HhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCC
Confidence            34555555443    3468999999999   977666555443

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=92.19  E-value=0.065  Score=36.88  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.1

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +.++|||+|||+|..+..+++.
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~  103 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ  103 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS
T ss_pred             CCCEEEEeccCCCHHHHHHHHc
Confidence            3458999999999999999875

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=91.91  E-value=0.12  Score=36.24  Aligned_cols=25  Identities=16%  Similarity=-0.012  Sum_probs=22.1

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+..+|||+|||+|..++.+++..+
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~   49 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCP   49 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCT
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCC
Confidence            4557999999999999999999876

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=91.77  E-value=0.14  Score=36.51  Aligned_cols=23  Identities=17%  Similarity=0.190  Sum_probs=20.6

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+.++|||+|||+|..++.+|+.
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~  233 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG  233 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC
Confidence            56789999999999999999974

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=91.65  E-value=0.084  Score=36.78  Aligned_cols=21  Identities=14%  Similarity=0.139  Sum_probs=19.0

Q ss_pred             CCeEEEeccchHHHHHHHHhh
Q 043521           45 AKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        45 ~k~iLEIGT~~GySal~lA~a   65 (71)
                      .++|||+|||+|..+..+|+.
T Consensus        83 g~~VLDlGcG~G~~s~~la~~  103 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGL  103 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTS
T ss_pred             CCEEEEEcCCCCHHHHHHHhc
Confidence            369999999999999999875

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=91.54  E-value=0.15  Score=36.78  Aligned_cols=21  Identities=19%  Similarity=0.233  Sum_probs=19.5

Q ss_pred             CCeEEEeccchHHHHHHHHhh
Q 043521           45 AKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        45 ~k~iLEIGT~~GySal~lA~a   65 (71)
                      .++|||+|||+|..++.+|+.
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~  235 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK  235 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT
T ss_pred             CCeEEEcccchhHHHHHHHHc
Confidence            679999999999999999975

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=91.52  E-value=0.21  Score=37.48  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=21.5

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+..+|||||||+|..++.+|...+
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g  196 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATN  196 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCC
Confidence            34556899999999999999997654

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=91.19  E-value=0.13  Score=36.37  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=22.0

Q ss_pred             HHhc-CCCeEEEeccchHHHHHHHHhh
Q 043521           40 LKLI-NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        40 ~~~~-~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .... +.++|||+|||+|..++.+|+.
T Consensus       212 ~~~~~~~~~VLDl~~G~G~~~~~la~~  238 (396)
T 2as0_A          212 EKWVQPGDRVLDVFTYTGGFAIHAAIA  238 (396)
T ss_dssp             GGGCCTTCEEEETTCTTTHHHHHHHHT
T ss_pred             HHHhhCCCeEEEecCCCCHHHHHHHHC
Confidence            3444 6789999999999999999975

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=90.82  E-value=0.032  Score=37.13  Aligned_cols=20  Identities=15%  Similarity=0.190  Sum_probs=15.1

Q ss_pred             CCCeEEEeccchHHHHHHHH
Q 043521           44 NAKNTMEIGVYTGYSLLYTA   63 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA   63 (71)
                      +.++|||||||+|..++.++
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~   74 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAA   74 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTG
T ss_pred             CCceEEEeCCCccHHHHHHH
Confidence            45689999999996655443

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=90.01  E-value=0.11  Score=35.77  Aligned_cols=32  Identities=6%  Similarity=0.045  Sum_probs=24.8

Q ss_pred             HHHHHHHHhcCC--CeEEEeccchHHHHHHHHhh
Q 043521           34 QFLSMLLKLINA--KNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        34 ~~L~~l~~~~~~--k~iLEIGT~~GySal~lA~a   65 (71)
                      +.+...+...+.  .+|||+|||+|..++++|+.
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~  109 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV  109 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc
Confidence            444445544555  79999999999999999975

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=89.68  E-value=0.17  Score=34.90  Aligned_cols=19  Identities=16%  Similarity=0.114  Sum_probs=14.1

Q ss_pred             CCeEEEeccchHHHHHHHH
Q 043521           45 AKNTMEIGVYTGYSLLYTA   63 (71)
Q Consensus        45 ~k~iLEIGT~~GySal~lA   63 (71)
                      ..+|||||||+|.-+..++
T Consensus        49 ~~~VLDlGCG~G~~l~~~~   67 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYF   67 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHH
T ss_pred             CCeEEEEecCCcHhHHHHH
Confidence            4799999999996444333

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=89.23  E-value=0.14  Score=36.19  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=20.0

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +.++|||+|||+|..++.+|+.
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~  230 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG  230 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH
T ss_pred             CCCeEEEeeeccCHHHHHHHHh
Confidence            6679999999999999999875

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=89.16  E-value=0.34  Score=37.44  Aligned_cols=29  Identities=24%  Similarity=0.358  Sum_probs=23.6

Q ss_pred             HHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           37 SMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        37 ~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+....+.++|||+|||+|..++.+|..
T Consensus       532 ~~l~~~~~g~~VLDlg~GtG~~sl~aa~~  560 (703)
T 3v97_A          532 RMLGQMSKGKDFLNLFSYTGSATVHAGLG  560 (703)
T ss_dssp             HHHHHHCTTCEEEEESCTTCHHHHHHHHT
T ss_pred             HHHHHhcCCCcEEEeeechhHHHHHHHHC
Confidence            34445567889999999999999999874

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=89.15  E-value=0.22  Score=34.97  Aligned_cols=36  Identities=11%  Similarity=0.163  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHH----hcCCCeEEEeccch--HHHHHHHHhhC
Q 043521           31 DEAQFLSMLLK----LINAKNTMEIGVYT--GYSLLYTALAI   66 (71)
Q Consensus        31 ~~g~~L~~l~~----~~~~k~iLEIGT~~--GySal~lA~al   66 (71)
                      ....|+...++    ..+.++|||||||+  +-.+..+++..
T Consensus        61 ~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~  102 (277)
T 3giw_A           61 ANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSV  102 (277)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHH
Confidence            34566666554    35678999999997  43455565543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=88.93  E-value=0.17  Score=37.21  Aligned_cols=21  Identities=5%  Similarity=0.055  Sum_probs=19.2

Q ss_pred             CCeEEEeccchHHHHHHHHhh
Q 043521           45 AKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        45 ~k~iLEIGT~~GySal~lA~a   65 (71)
                      -++|||+|||+|+.++++|+.
T Consensus        94 g~~VLDLgcG~G~~al~LA~~  114 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK  114 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT
T ss_pred             CCEEEEeCCCchHHHHHHHhc
Confidence            579999999999999999875

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=88.48  E-value=0.33  Score=33.78  Aligned_cols=21  Identities=5%  Similarity=-0.179  Sum_probs=18.9

Q ss_pred             cCCCeEEEeccchHHHHHHHHh
Q 043521           43 INAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~   64 (71)
                      .+.++|||+|||+|..++. |+
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~  214 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK  214 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT
T ss_pred             CCCCEEEEccCccCHHHHh-cc
Confidence            4678999999999999999 86

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=88.35  E-value=0.1  Score=37.24  Aligned_cols=25  Identities=0%  Similarity=-0.335  Sum_probs=20.6

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      -.|.+|||||||+|..|+.++..-|
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p  155 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPA  155 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCT
T ss_pred             CCCceeeeeccCccHHHHHHHhhCC
Confidence            5589999999999998888776433

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=85.93  E-value=0.33  Score=33.46  Aligned_cols=24  Identities=17%  Similarity=0.012  Sum_probs=18.2

Q ss_pred             CCCeEEEeccchHH----HHHHHHhhCC
Q 043521           44 NAKNTMEIGVYTGY----SLLYTALAIP   67 (71)
Q Consensus        44 ~~k~iLEIGT~~Gy----Sal~lA~al~   67 (71)
                      ++.+|+++||++|-    .|+.+++.++
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~  132 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALG  132 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHC
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcc
Confidence            45699999999997    4566666544

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=84.96  E-value=0.81  Score=32.90  Aligned_cols=20  Identities=5%  Similarity=-0.139  Sum_probs=18.3

Q ss_pred             CeEEEeccchHHHHHHHHhh
Q 043521           46 KNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        46 k~iLEIGT~~GySal~lA~a   65 (71)
                      ..|||||.|.|..|..|++.
T Consensus        60 ~~VlEIGPG~G~LT~~Ll~~   79 (353)
T 1i4w_A           60 LKVLDLYPGVGIQSAIFYNK   79 (353)
T ss_dssp             CEEEEESCTTCHHHHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHhh
Confidence            67999999999999999875

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=84.83  E-value=0.47  Score=33.32  Aligned_cols=23  Identities=13%  Similarity=0.120  Sum_probs=19.8

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +.++||||| |+|..++.+++.-+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~  194 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGL  194 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCC
Confidence            568999999 99999999987643

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=84.77  E-value=1.8  Score=31.12  Aligned_cols=43  Identities=12%  Similarity=-0.031  Sum_probs=31.5

Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      +..-.++...+++-.++...+..+|+|+|||+|...+.+++.+
T Consensus       151 G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l  193 (445)
T 2okc_A          151 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYM  193 (445)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHH
T ss_pred             CcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHH
Confidence            4444566666666666655555699999999999988887654

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=82.52  E-value=0.73  Score=33.16  Aligned_cols=25  Identities=16%  Similarity=0.159  Sum_probs=20.6

Q ss_pred             cCCCeEEEeccchHHHHHHHH-hhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTA-LAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA-~al~   67 (71)
                      .+...++|||+.+|..+++++ +..+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~  250 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKG  250 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTS
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcC
Confidence            455789999999999999998 4444

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=82.23  E-value=1.1  Score=31.21  Aligned_cols=26  Identities=12%  Similarity=0.102  Sum_probs=18.0

Q ss_pred             cCCCeEEEecc------chHHHHHHHHhhCCCCC
Q 043521           43 INAKNTMEIGV------YTGYSLLYTALAIPDDG   70 (71)
Q Consensus        43 ~~~k~iLEIGT------~~GySal~lA~al~~~g   70 (71)
                      .+..+|||+||      ++|.  ..+++.+++++
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~   93 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGT   93 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTC
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCC
Confidence            34559999999      6677  55566666544

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=81.77  E-value=0.8  Score=31.72  Aligned_cols=23  Identities=13%  Similarity=-0.077  Sum_probs=19.9

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+-++|||+|||+|+.++.+|+.
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~  146 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVY  146 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHH
T ss_pred             CCCCEEEEecCcCcHHHHHHHHh
Confidence            34678999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	71
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	6e-10
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	2e-09
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	7e-08
d2bm8a1	232	c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI	2e-04

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.2 bits (119), Expect = 6e-10
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 14 FSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70
          +    +      M     + Q +  +++  +    +E+G Y GYS +  A  +    
Sbjct: 30 YCTQKEWA----MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGA 82

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 49.0 bits (116), Expect = 2e-09
 Identities = 40/49 (81%), Positives = 43/49 (87%)

Query: 23 RNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
           N M ++ DE QFLSMLLKLINAKNTMEIGVYTGYSLL TALAIP+DGK
Sbjct: 38 WNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGK 86

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 7e-08
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDD 69
             + T ++AQ L+ L +LI AK  +++G +TGYS L  ALA+P D
Sbjct: 39 GDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPAD 84

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 35.1 bits (80), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 26  MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70
           ML  PD       +L  +  +  +E+GVY G SL +        G
Sbjct: 62  MLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMG 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	71
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.7
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.69
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.54
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.38
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.15
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.15
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.06
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.91
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.86
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.8
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.58
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.57
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	97.54
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.52
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.5
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	97.41
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.33
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	97.29
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.23
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.19
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.18
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.17
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	97.14
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	97.12
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	97.07
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.95
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.87
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	96.84
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	96.83
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.8
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	96.72
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	96.47
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	96.45
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	96.43
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	96.26
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	96.22
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	96.22
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.18
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	96.14
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	96.11
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	96.08
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.05
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	96.01
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	96.01
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	95.96
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	95.9
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	95.89
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.67
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	95.6
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	95.54
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	95.16
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	95.0
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	94.91
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	94.87
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	94.67
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	94.57
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	94.41
d2h00a1	250	Methyltransferase 10 domain containing protein MET	94.37
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	93.74
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	93.59
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	93.28
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	93.24
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	92.9
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	92.67
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	92.54
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	92.13
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	91.99
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	91.21
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	91.14
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	87.7
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	87.48
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	87.21
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	86.81
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	86.41
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	86.35
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	86.13
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	84.52
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	83.41
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	82.72
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	81.77
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	80.57

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.70  E-value=1e-17  Score=113.85  Aligned_cols=59  Identities=68%  Similarity=0.901  Sum_probs=53.0

Q ss_pred             HhhhhhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           13 YFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        13 ~~~~~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      ...+++..++.+.|.++|++|+||++|++..+|++||||||++||||+|||+++|++|+
T Consensus        28 ~l~~~~~~~~~~~m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~   86 (227)
T d1susa1          28 ELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGK   86 (227)
T ss_dssp             HHHHHHHTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCE
T ss_pred             HHHHHHHhCCCcccccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcE
Confidence            33455666777889999999999999999999999999999999999999999998874

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.8e-17  Score=111.91  Aligned_cols=59  Identities=36%  Similarity=0.553  Sum_probs=52.8

Q ss_pred             HhhhhhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           13 YFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        13 ~~~~~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      -..+.+..++.+.|.++|++|+||++|++..+|++||||||++||||+|||++++++|+
T Consensus        28 ~l~~~t~~~~~~~~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~   86 (219)
T d2avda1          28 SLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGR   86 (219)
T ss_dssp             HHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCE
T ss_pred             HHHHHHHhCCCCCcccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCce
Confidence            34555666677789999999999999999999999999999999999999999998874

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=3.3e-15  Score=99.85  Aligned_cols=49  Identities=18%  Similarity=0.318  Sum_probs=45.8

Q ss_pred             CcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           23 RNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        23 ~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      ...|+++|++|++|..+++..+|++||||||++||||+|||++++++|+
T Consensus        35 ~~~m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~   83 (214)
T d2cl5a1          35 EWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGAR   83 (214)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCE
T ss_pred             CCccccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccE
Confidence            4568899999999999999999999999999999999999999998774

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.38  E-value=2.2e-07  Score=62.37  Aligned_cols=38  Identities=26%  Similarity=0.392  Sum_probs=34.8

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           29 TPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        29 ~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .|....++++++...+|++||||||+.|+|++++|+.+
T Consensus        65 ~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l  102 (232)
T d2bm8a1          65 DPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLT  102 (232)
T ss_dssp             CHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHH
Confidence            47778999999999999999999999999999998654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.15  E-value=1.5e-06  Score=58.91  Aligned_cols=54  Identities=26%  Similarity=0.450  Sum_probs=46.1

Q ss_pred             hhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           18 IDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        18 ~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      ....+...-++-|....++-.++...+-.+|||+|||+|+.|++||+.+.++|+
T Consensus        77 ~~~~~r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~  130 (266)
T d1o54a_          77 IMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGK  130 (266)
T ss_dssp             HHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCE
T ss_pred             HhhccCCccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcE
Confidence            344555666788888999999999999999999999999999999999987764

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.15  E-value=1.1e-06  Score=59.87  Aligned_cols=55  Identities=18%  Similarity=0.181  Sum_probs=47.9

Q ss_pred             hhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           17 HIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        17 ~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      .+...+...-++-|....++-.++...+-.+|||+|||+|+.|++||+++.++|+
T Consensus        69 ~~~~~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~  123 (264)
T d1i9ga_          69 YVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQ  123 (264)
T ss_dssp             HHTTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSE
T ss_pred             HHhhccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcE
Confidence            3445566677888888999999999999999999999999999999999988774

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.7e-06  Score=59.24  Aligned_cols=55  Identities=16%  Similarity=0.331  Sum_probs=46.2

Q ss_pred             hhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           17 HIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        17 ~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      .....+...-++-|....++-.++...+-.+|||+|||+|+.|++||+++.++|+
T Consensus        71 ~~~~~~r~tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~  125 (324)
T d2b25a1          71 YVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGR  125 (324)
T ss_dssp             HHHHSCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCE
T ss_pred             HhhccCCCCcccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcE
Confidence            3444556666777888888888899999999999999999999999999988774

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.1e-06  Score=56.49  Aligned_cols=40  Identities=18%  Similarity=0.190  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHh-cCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           31 DEAQFLSMLLKL-INAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        31 ~~g~~L~~l~~~-~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      ..+.+++.|... .+-.+|||||||+||+|..||+...++|
T Consensus        62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g  102 (224)
T d1i1na_          62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTG  102 (224)
T ss_dssp             HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCc
Confidence            446777766544 4457999999999999999999877665

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.86  E-value=4.5e-06  Score=54.26  Aligned_cols=41  Identities=22%  Similarity=0.319  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           30 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        30 ~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      |..-..+-.++...+-.+|||||||+||++..||+.++++|
T Consensus        61 P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g  101 (213)
T d1dl5a1          61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKG  101 (213)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTC
T ss_pred             chhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCC
Confidence            44433333445567777999999999999999999887665

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.80  E-value=2.9e-06  Score=57.24  Aligned_cols=51  Identities=25%  Similarity=0.387  Sum_probs=28.9

Q ss_pred             hcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           21 MRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        21 ~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      .+++.-++-|....++-..+...+-.+|||+|||+|+.|++||+++.++|+
T Consensus        62 ~~r~~qiiypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~  112 (250)
T d1yb2a1          62 IRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGT  112 (250)
T ss_dssp             C------------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSE
T ss_pred             CCCCCcccCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcE
Confidence            344444455555666666777788889999999999999999999877763

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.58  E-value=2.6e-05  Score=47.18  Aligned_cols=37  Identities=11%  Similarity=0.064  Sum_probs=27.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +.+.--+++..| ...+..+|||||||+|+.+++||+.
T Consensus         5 ~~~~~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~   41 (201)
T d1pjza_           5 VNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ   41 (201)
T ss_dssp             STHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHc
Confidence            445444555554 4566779999999999999999974

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.57  E-value=8.1e-06  Score=53.88  Aligned_cols=38  Identities=21%  Similarity=0.154  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHH-hcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           31 DEAQFLSMLLK-LINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        31 ~~g~~L~~l~~-~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ..+.+++.|.. ..+-.+|||||||+||.|..|++.+.+
T Consensus        66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~  104 (223)
T d1r18a_          66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKA  104 (223)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhh
Confidence            45677776643 445579999999999999999886543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=97.54  E-value=3.4e-05  Score=51.28  Aligned_cols=30  Identities=20%  Similarity=0.319  Sum_probs=26.2

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALAIPDDG   70 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~al~~~g   70 (71)
                      +..+|.+|||||||+|..+..+++..|+++
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~   53 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGS   53 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTC
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCC
Confidence            457899999999999999999999887654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.52  E-value=6e-05  Score=47.23  Aligned_cols=40  Identities=15%  Similarity=0.066  Sum_probs=32.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ....+...++-.++...+-.+|||||||+|+.++++|+..
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~   55 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV   55 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccc
Confidence            3455667777777888888899999999999999998753

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=4.8e-05  Score=48.94  Aligned_cols=41  Identities=17%  Similarity=0.121  Sum_probs=35.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+++.-+.+...++..+.++|||||||+|..+..+++..+
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~   56 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG   56 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC
Confidence            45777888888888888889999999999999999988654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=97.41  E-value=3.8e-05  Score=48.29  Aligned_cols=33  Identities=12%  Similarity=0.139  Sum_probs=26.2

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ++++.. +...+.++|||||||+|..+.++++..
T Consensus         5 ~~ll~~-~~l~~~~rVLDiGcG~G~~~~~l~~~~   37 (231)
T d1vl5a_           5 AKLMQI-AALKGNEEVLDVATGGGHVANAFAPFV   37 (231)
T ss_dssp             HHHHHH-HTCCSCCEEEEETCTTCHHHHHHGGGS
T ss_pred             HHHHHh-cCCCCcCEEEEecccCcHHHHHHHHhC
Confidence            444444 666777899999999999999998753

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.33  E-value=8.1e-05  Score=49.13  Aligned_cols=39  Identities=23%  Similarity=0.286  Sum_probs=29.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ..|.....+-..+...+-.+|||||||+||.|..||+..
T Consensus        54 ~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~   92 (224)
T d1vbfa_          54 TALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV   92 (224)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS
T ss_pred             ehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh
Confidence            445444444445567788899999999999999998754

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=97.29  E-value=0.00013  Score=46.51  Aligned_cols=35  Identities=11%  Similarity=0.114  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           32 EAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        32 ~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ...+|...+...+-.+|||||||+|..+..+++..
T Consensus         4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~   38 (234)
T d1xxla_           4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV   38 (234)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC
Confidence            45677777777788899999999999999999864

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.23  E-value=0.00015  Score=47.49  Aligned_cols=43  Identities=16%  Similarity=0.301  Sum_probs=30.9

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           25 HMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        25 ~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .-.+.|..-..+-.++...+-.+|||||||+||+|..||+-.+
T Consensus        59 ~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g  101 (215)
T d1jg1a_          59 QTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK  101 (215)
T ss_dssp             CEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC
T ss_pred             hhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC
Confidence            3345555434444455677778999999999999999997543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.19  E-value=8.6e-05  Score=46.66  Aligned_cols=35  Identities=11%  Similarity=0.100  Sum_probs=28.5

Q ss_pred             HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .++|-..+...+.++|||||||+|+.++.+|+..+
T Consensus        41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~   75 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEVK   75 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS
T ss_pred             HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc
Confidence            45555556677889999999999999999998654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00014  Score=46.76  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=25.1

Q ss_pred             HHHHHHHHhc--CCCeEEEeccchHHHHHHHHhhCC
Q 043521           34 QFLSMLLKLI--NAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        34 ~~L~~l~~~~--~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .++..++...  +.++|||||||+|+++.++++..+
T Consensus        41 ~~~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~   76 (229)
T d1zx0a1          41 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPI   76 (229)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCE
T ss_pred             HHHHHHHHhhccCCCeEEEeeccchHHHHHHHHcCC
Confidence            4444554443  445999999999999999998643

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00029  Score=44.94  Aligned_cols=54  Identities=9%  Similarity=-0.038  Sum_probs=37.5

Q ss_pred             HHhhhhhhhh-cCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           12 VYFSQHIDGM-RRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        12 ~~~~~~~~~~-~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +|.+...... .+..-...+.--+++..+....+..+|||+|||.|..+++||+.
T Consensus        12 ~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~   66 (229)
T d2bzga1          12 EWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR   66 (229)
T ss_dssp             HHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT
T ss_pred             HHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC
Confidence            3666654432 22333455555566766667777789999999999999999973

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.14  E-value=0.00025  Score=46.74  Aligned_cols=36  Identities=14%  Similarity=0.192  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           30 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        30 ~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ....+++..+.+..+.++|||||||+|..+..+|+.
T Consensus        42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~   77 (292)
T d1xvaa_          42 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE   77 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc
Confidence            445688888889999999999999999999999875

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.12  E-value=0.00016  Score=45.06  Aligned_cols=27  Identities=26%  Similarity=0.418  Sum_probs=23.9

Q ss_pred             HHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           39 LLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        39 l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .++..+|.+|||||||+|..+++|++.
T Consensus        25 ~~~~~~~grvLDiGcG~G~~~~~la~~   51 (198)
T d2i6ga1          25 AAKVVAPGRTLDLGCGNGRNSLYLAAN   51 (198)
T ss_dssp             HHTTSCSCEEEEETCTTSHHHHHHHHT
T ss_pred             HcccCCCCcEEEECCCCCHHHHHHHHH
Confidence            356778999999999999999999975

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.07  E-value=0.00028  Score=44.63  Aligned_cols=34  Identities=21%  Similarity=0.284  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhh
Q 043521           32 EAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        32 ~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...++..+.+.   .++++|||||||+|..++.+++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~   62 (251)
T d1wzna1          26 EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER   62 (251)
T ss_dssp             HHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc
Confidence            34566666544   44568999999999999999874

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.95  E-value=0.00032  Score=43.31  Aligned_cols=21  Identities=5%  Similarity=-0.059  Sum_probs=18.4

Q ss_pred             CCeEEEeccchHHHHHHHHhh
Q 043521           45 AKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        45 ~k~iLEIGT~~GySal~lA~a   65 (71)
                      -.+|||||||+|..+..+++.
T Consensus        38 ~~~ILDiGcG~G~~~~~la~~   58 (226)
T d1ve3a1          38 RGKVLDLACGVGGFSFLLEDY   58 (226)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT
T ss_pred             CCEEEEECCCcchhhhhHhhh
Confidence            348999999999999999863

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.87  E-value=0.00047  Score=43.94  Aligned_cols=35  Identities=9%  Similarity=-0.083  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhc--CCCeEEEeccchHHHHHHHHhh
Q 043521           31 DEAQFLSMLLKLI--NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        31 ~~g~~L~~l~~~~--~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+++..++...  ++++|||||||+|..+..+++.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~   58 (246)
T d1y8ca_          22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK   58 (246)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh
Confidence            3466777777664  4679999999999999999875

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=96.84  E-value=0.00021  Score=46.45  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=23.9

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ..+.++|||||||+|..+..+++..|.
T Consensus        78 ~~~~~~VLDvGcG~G~~~~~la~~~p~  104 (253)
T d1tw3a2          78 WTNVRHVLDVGGGKGGFAAAIARRAPH  104 (253)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             CccCCEEEEeCCCCCHHHHHHHHhcce
Confidence            467799999999999999999998763

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=96.83  E-value=0.0003  Score=44.71  Aligned_cols=30  Identities=13%  Similarity=0.187  Sum_probs=25.3

Q ss_pred             HHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           36 LSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        36 L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +..+.+..++++|||||||+|..+..+++.
T Consensus        12 ~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~   41 (225)
T d2p7ia1          12 VRAFTPFFRPGNLLELGSFKGDFTSRLQEH   41 (225)
T ss_dssp             HHHHGGGCCSSCEEEESCTTSHHHHHHTTT
T ss_pred             HHHhhhhCCCCcEEEEeCCCcHHHHHHHHc
Confidence            455666788999999999999999998864

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.00057  Score=42.61  Aligned_cols=32  Identities=19%  Similarity=0.237  Sum_probs=24.0

Q ss_pred             HHHHHHHHh--cCCCeEEEeccchHHHHHHHHhh
Q 043521           34 QFLSMLLKL--INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        34 ~~L~~l~~~--~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +++..++..  .++.+|||||||+|..+.++++.
T Consensus        30 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~   63 (246)
T d2avna1          30 RLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQER   63 (246)
T ss_dssp             HHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCchhccccccc
Confidence            444444433  35679999999999999999874

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.72  E-value=0.0014  Score=41.32  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=24.8

Q ss_pred             HHHHHHHHh--cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           34 QFLSMLLKL--INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        34 ~~L~~l~~~--~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +.+..+++.  .+..+|||||||+|..+..+++..+
T Consensus        27 ~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~   62 (225)
T d1im8a_          27 TAIGMLAERFVTADSNVYDLGCSRGAATLSARRNIN   62 (225)
T ss_dssp             HHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCC
T ss_pred             HHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhc
Confidence            344444443  3445899999999999999998764

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.47  E-value=0.00089  Score=43.12  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=21.8

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +...|||||||+|.+++.+|+..|+
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~   53 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPD   53 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTT
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCC
Confidence            3457999999999999999998775

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.45  E-value=0.00091  Score=43.01  Aligned_cols=26  Identities=12%  Similarity=0.171  Sum_probs=22.5

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+-.+|||||||+|+.+..+|+..|+
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~   80 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDE   80 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTT
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccC
Confidence            34469999999999999999998864

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00084  Score=44.70  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.4

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhh
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+.++|||||||+|..++++|++
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~   56 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKA   56 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHc
Confidence            357789999999999999999986

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.26  E-value=0.0014  Score=42.18  Aligned_cols=25  Identities=24%  Similarity=0.195  Sum_probs=22.1

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ....|||||||.|-+++.+|+..|+
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~   55 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPD   55 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTT
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCC
Confidence            3457999999999999999998875

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.00097  Score=43.76  Aligned_cols=26  Identities=31%  Similarity=0.386  Sum_probs=23.0

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .++.+|||||||+|+.+..+++..++
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~  108 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPE  108 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTT
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCC
Confidence            46779999999999999999988764

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.22  E-value=0.0014  Score=42.74  Aligned_cols=26  Identities=12%  Similarity=0.037  Sum_probs=21.9

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+-.+|||+|||+|+++..+|+..|+
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~   98 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADK   98 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTT
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCC
Confidence            34458999999999999999997653

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.18  E-value=0.0011  Score=43.12  Aligned_cols=24  Identities=8%  Similarity=0.130  Sum_probs=20.6

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      .+..+|||||||+|..+..||+..
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~   89 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKF   89 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccC
Confidence            355699999999999999999754

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0024  Score=42.86  Aligned_cols=25  Identities=24%  Similarity=0.398  Sum_probs=21.7

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhh
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+-++|||||||+|..++++|++
T Consensus        35 ~~~~~~~VLDlGcGtG~ls~~aa~~   59 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGTGILSMFAAKH   59 (328)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHT
T ss_pred             ccCCcCEEEEeCCCCCHHHHHHHHh
Confidence            3457899999999999999998875

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=96.11  E-value=0.0009  Score=41.36  Aligned_cols=28  Identities=25%  Similarity=0.217  Sum_probs=20.1

Q ss_pred             HHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           38 MLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        38 ~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+....+..+|||||||+|..+..+++.
T Consensus        30 ~~~~~~~~~~vLDiGcG~G~~~~~~~~~   57 (208)
T d1vlma_          30 AVKCLLPEGRGVEIGVGTGRFAVPLKIK   57 (208)
T ss_dssp             HHHHHCCSSCEEEETCTTSTTHHHHTCC
T ss_pred             HHHhhCCCCeEEEECCCCcccccccceE
Confidence            3334444458999999999988877643

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.08  E-value=0.0028  Score=42.63  Aligned_cols=39  Identities=8%  Similarity=0.123  Sum_probs=29.5

Q ss_pred             CCHHHHHHHHHHHHhcCC---CeEEEeccchHHHHHHHHhhC
Q 043521           28 STPDEAQFLSMLLKLINA---KNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        28 i~~~~g~~L~~l~~~~~~---k~iLEIGT~~GySal~lA~al   66 (71)
                      ....|-+.+..++...+.   .+|||||||.|-.++++|+.-
T Consensus        43 L~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~   84 (285)
T d1kpga_          43 LQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY   84 (285)
T ss_dssp             HHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC
Confidence            444455666777666554   599999999999999999864

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.05  E-value=0.0011  Score=43.52  Aligned_cols=28  Identities=18%  Similarity=0.257  Sum_probs=24.5

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIPDDGK   71 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~~~g~   71 (71)
                      +-.+|||+|||+|+.+..+|+.+.++|+
T Consensus        73 pG~~VLDlGaGsG~~t~~la~~VG~~G~  100 (227)
T d1g8aa_          73 PGKSVLYLGIASGTTASHVSDIVGWEGK  100 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSE
T ss_pred             CCCEEEEeccCCCHHHHHHHHHhCCCCE
Confidence            3459999999999999999999887764

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=96.01  E-value=0.0015  Score=42.72  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=23.6

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+.++|||||||+|..+..++++.|.
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~  105 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPH  105 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTT
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcC
Confidence            57789999999999999999998774

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.01  E-value=0.0029  Score=42.62  Aligned_cols=41  Identities=12%  Similarity=0.082  Sum_probs=30.2

Q ss_pred             CCCHHHHHHHHHHHHhcC---CCeEEEeccchHHHHHHHHhhCC
Q 043521           27 LSTPDEAQFLSMLLKLIN---AKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        27 ~i~~~~g~~L~~l~~~~~---~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .....+-+-+..++...+   -.+|||||||.|..++++|+..+
T Consensus        41 tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g   84 (291)
T d1kpia_          41 TLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD   84 (291)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC
Confidence            444555566666666654   45999999999999999997644

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=95.96  E-value=0.0049  Score=40.80  Aligned_cols=34  Identities=12%  Similarity=0.196  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHhc-CCCeEEEeccchHHHHHHHHh
Q 043521           31 DEAQFLSMLLKLI-NAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        31 ~~g~~L~~l~~~~-~~k~iLEIGT~~GySal~lA~   64 (71)
                      .+.-.|..+.+.. +.++|||+|||+|..++++++
T Consensus       106 TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~  140 (254)
T d2nxca1         106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEK  140 (254)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHH
T ss_pred             hhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHh
Confidence            4455555555544 456999999999999998876

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.90  E-value=0.0038  Score=41.56  Aligned_cols=38  Identities=11%  Similarity=0.127  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhcC---CCeEEEeccchHHHHHHHHhhCC
Q 043521           30 PDEAQFLSMLLKLIN---AKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        30 ~~~g~~L~~l~~~~~---~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..|-+-+..+++..+   ..+|||||||.|..+.++++..+
T Consensus        35 ~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g   75 (280)
T d2fk8a1          35 EAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD   75 (280)
T ss_dssp             HHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc
Confidence            344455777776654   45999999999999999987543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.00083  Score=43.57  Aligned_cols=20  Identities=20%  Similarity=0.107  Sum_probs=18.0

Q ss_pred             eEEEeccchHHHHHHHHhhC
Q 043521           47 NTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        47 ~iLEIGT~~GySal~lA~al   66 (71)
                      +|||||||+|..+.+++..+
T Consensus        43 ~VLDiGcG~G~~~~~ll~~l   62 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILSKV   62 (280)
T ss_dssp             EEEEETCTTSHHHHHHHHHH
T ss_pred             eEEEEcCCCCHHHHHHHHHh
Confidence            79999999999999988764

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.67  E-value=0.0028  Score=42.36  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=21.1

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhh
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..+-++|||||||+|..++++|++
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~   54 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKA   54 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHh
Confidence            456789999999999999999885

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0014  Score=41.25  Aligned_cols=26  Identities=12%  Similarity=0.032  Sum_probs=20.6

Q ss_pred             hcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           42 LINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        42 ~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      ..+..+|||||||+|..+..++...+
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~   83 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF   83 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC
Confidence            35667999999999999988765443

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0041  Score=41.84  Aligned_cols=39  Identities=26%  Similarity=0.290  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHh--cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           30 PDEAQFLSMLLKL--INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        30 ~~~g~~L~~l~~~--~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      |++=.+.......  .++.+|||+|||+|.-++.+|...|+
T Consensus        92 peTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~  132 (274)
T d2b3ta1          92 PDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPD  132 (274)
T ss_dssp             TTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTT
T ss_pred             cchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCc
Confidence            4433344333333  44558999999999999999998874

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.0095  Score=39.45  Aligned_cols=30  Identities=10%  Similarity=-0.049  Sum_probs=23.4

Q ss_pred             HHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           36 LSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        36 L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +-..+...+.+.|||||+|.|.-|-.|++.
T Consensus        13 Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~   42 (252)
T d1qyra_          13 IVSAINPQKGQAMVEIGPGLAALTEPVGER   42 (252)
T ss_dssp             HHHHHCCCTTCCEEEECCTTTTTHHHHHTT
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHcc
Confidence            333344456779999999999999999875

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=95.00  E-value=0.0075  Score=39.45  Aligned_cols=31  Identities=19%  Similarity=0.127  Sum_probs=24.0

Q ss_pred             HHHHHHHh---cCCCeEEEeccchHHHHHHHHhh
Q 043521           35 FLSMLLKL---INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        35 ~L~~l~~~---~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+..++..   .+-.+|||||+|+|..|..+++.
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~   42 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR   42 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC
Confidence            34444444   45679999999999999999875

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=94.91  E-value=0.0052  Score=39.29  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=19.3

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+.++|||||||+|.-+..+++.
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~   45 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERA   45 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH
T ss_pred             CCcCEEEEecccCcHHHHHHHHc
Confidence            45679999999999888888764

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.87  E-value=0.029  Score=35.33  Aligned_cols=40  Identities=20%  Similarity=0.108  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHHHHHHhc---CCCeEEEeccchHHHHHHHHhh
Q 043521           26 MLSTPDEAQFLSMLLKLI---NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~---~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...++....-+..++...   .-++|||+|||+|..++.+++.
T Consensus        25 y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~   67 (201)
T d1wy7a1          25 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL   67 (201)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc
Confidence            345566565555555543   5579999999999999887653

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.67  E-value=0.024  Score=36.27  Aligned_cols=40  Identities=10%  Similarity=0.100  Sum_probs=27.0

Q ss_pred             CCCCHHHHHHHHHHHHhc---CCCeEEEeccchHHHHHHHHhh
Q 043521           26 MLSTPDEAQFLSMLLKLI---NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~---~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+++.+.-+-..+...   .-++|||+|||+|..++.++..
T Consensus        27 y~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~   69 (197)
T d1ne2a_          27 YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL   69 (197)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHc
Confidence            345555554443444443   5789999999999998887653

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=94.57  E-value=0.0098  Score=38.57  Aligned_cols=23  Identities=9%  Similarity=0.007  Sum_probs=19.3

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+..+|||+|||+|..|..++..
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~  114 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTK  114 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHH
T ss_pred             CCCCeEEEecccCChhhHHHHhh
Confidence            46679999999999999887753

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.0093  Score=37.37  Aligned_cols=21  Identities=14%  Similarity=0.158  Sum_probs=16.3

Q ss_pred             CCCeEEEeccchHHHHHHHHh
Q 043521           44 NAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~   64 (71)
                      +.++|||||||+|.-++.++.
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~   71 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAAC   71 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGG
T ss_pred             CCCEEEEECCCCCHhHHHHhc
Confidence            456899999999976666654

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.025  Score=36.92  Aligned_cols=24  Identities=8%  Similarity=0.140  Sum_probs=20.8

Q ss_pred             CCCeEEEeccchHHHHHHHHhhCC
Q 043521           44 NAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      +..++||||||+|.-++.+|...|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~   84 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLN   84 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             ccceEEEeCCCchHHHHHHHHhCC
Confidence            445899999999999999998765

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.74  E-value=0.023  Score=34.11  Aligned_cols=31  Identities=10%  Similarity=0.095  Sum_probs=23.2

Q ss_pred             HHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           35 FLSMLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        35 ~L~~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ++..|-...+-++|||+|||+|..++..++.
T Consensus         5 ~fn~l~~~~~g~~vlDl~~GtG~~~iea~~r   35 (152)
T d2esra1           5 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR   35 (152)
T ss_dssp             HHHHHCSCCCSCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHHhhCCCCeEEEcCCccCHHHHHHHHh
Confidence            4444444567789999999999999876653

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=93.59  E-value=0.0047  Score=40.82  Aligned_cols=26  Identities=27%  Similarity=0.195  Sum_probs=21.4

Q ss_pred             HHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           40 LKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        40 ~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +...+..+|||||+|+|..|..+++.
T Consensus        25 ~~~~~~d~VLEIGpG~G~LT~~L~~~   50 (245)
T d1yuba_          25 LNLKETDTVYEIGTGKGHLTTKLAKI   50 (245)
T ss_dssp             CCCCSSEEEEECSCCCSSCSHHHHHH
T ss_pred             cCCCCCCeEEEECCCccHHHHHHHhh
Confidence            33456679999999999999999875

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=93.28  E-value=0.028  Score=36.24  Aligned_cols=26  Identities=19%  Similarity=0.178  Sum_probs=23.0

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+.++|||||++.|..++.++++-|.
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P~  105 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYPT  105 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCC
Confidence            44689999999999999999998874

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.24  E-value=0.035  Score=33.87  Aligned_cols=40  Identities=18%  Similarity=0.104  Sum_probs=32.5

Q ss_pred             CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           29 TPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        29 ~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      ++...+++..++...+..+|||.|||+|.-...+.+..++
T Consensus         4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~   43 (223)
T d2ih2a1           4 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGT   43 (223)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccc
Confidence            4567888888888888899999999999877777665543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.90  E-value=0.043  Score=38.65  Aligned_cols=25  Identities=20%  Similarity=0.280  Sum_probs=21.0

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+-.+|||||||+|..++++|...+
T Consensus       215 kpgd~fLDLGCG~G~~vl~aA~~~g  239 (406)
T d1u2za_         215 KKGDTFMDLGSGVGNCVVQAALECG  239 (406)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHC
T ss_pred             CCCCEEEeCCCCCcHHHHHHHHHcC
Confidence            3446899999999999999998755

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.058  Score=36.13  Aligned_cols=34  Identities=15%  Similarity=0.287  Sum_probs=25.4

Q ss_pred             HHHHHHHH---hcCCCeEEEeccchHHHHHHHHhhCC
Q 043521           34 QFLSMLLK---LINAKNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        34 ~~L~~l~~---~~~~k~iLEIGT~~GySal~lA~al~   67 (71)
                      .++..+++   ..+-.+|||||||+|..++.+|+..+
T Consensus       138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~  174 (328)
T d1nw3a_         138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN  174 (328)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC
Confidence            34444444   45556899999999999999998655

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=92.54  E-value=0.035  Score=35.71  Aligned_cols=28  Identities=11%  Similarity=0.318  Sum_probs=24.1

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +..++++|+|||||.|.=++-+|-..|+
T Consensus        62 ~~~~~~~ilDiGsGaG~PGi~laI~~p~   89 (207)
T d1jsxa_          62 PYLQGERFIDVGTGPGLPGIPLSIVRPE   89 (207)
T ss_dssp             GGCCSSEEEEETCTTTTTHHHHHHHCTT
T ss_pred             hhhcCCceeeeeccCCceeeehhhhccc
Confidence            4467789999999999999999987774

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=92.13  E-value=0.043  Score=35.60  Aligned_cols=26  Identities=15%  Similarity=0.196  Sum_probs=23.5

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+.++|||||+|+|..+..++++-|.
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~  104 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPK  104 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCC
Confidence            56789999999999999999998774

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.051  Score=36.36  Aligned_cols=23  Identities=17%  Similarity=0.073  Sum_probs=19.7

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ..-..|||||.|.|.-|..|++.
T Consensus        20 ~~~d~VlEIGPG~G~LT~~Ll~~   42 (278)
T d1zq9a1          20 RPTDVVLEVGPGTGNMTVKLLEK   42 (278)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHhc
Confidence            34558999999999999999875

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=91.21  E-value=0.14  Score=31.16  Aligned_cols=32  Identities=13%  Similarity=-0.083  Sum_probs=22.8

Q ss_pred             HHHHHHHHHh-cCCCeEEEeccchHHHHHHHHh
Q 043521           33 AQFLSMLLKL-INAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        33 g~~L~~l~~~-~~~k~iLEIGT~~GySal~lA~   64 (71)
                      ..+...+... .+..+|||+|||+|..++..++
T Consensus        29 e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~   61 (171)
T d1ws6a1          29 KALFDYLRLRYPRRGRFLDPFAGSGAVGLEAAS   61 (171)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHH
T ss_pred             HHHHHHhhccccCCCeEEEeccccchhhhhhhh
Confidence            3444444433 4677999999999999887554

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.14  E-value=0.072  Score=34.51  Aligned_cols=26  Identities=15%  Similarity=0.134  Sum_probs=23.1

Q ss_pred             cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521           43 INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      .+.++|||||+++|..++.++++.|.
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~  105 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPL  105 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCC
Confidence            45789999999999999999998874

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.70  E-value=0.17  Score=31.17  Aligned_cols=40  Identities=5%  Similarity=0.020  Sum_probs=30.7

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHh
Q 043521           25 HMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        25 ~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~   64 (71)
                      .|..+...-+++.+|.....-++|||+.||+|..++..++
T Consensus        22 RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~s   61 (182)
T d2fhpa1          22 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVS   61 (182)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHH
T ss_pred             CcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeee
Confidence            3455555567777776677889999999999999996554

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.48  E-value=0.18  Score=32.83  Aligned_cols=23  Identities=13%  Similarity=-0.077  Sum_probs=20.4

Q ss_pred             cCCCeEEEeccchHHHHHHHHhh
Q 043521           43 INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+-++|||+|||+|+.++.+|+.
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~  128 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVY  128 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHH
T ss_pred             CCccEEEECcceEcHHHHHHHHh
Confidence            46689999999999999999875

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.21  E-value=0.047  Score=35.14  Aligned_cols=19  Identities=16%  Similarity=0.275  Sum_probs=14.8

Q ss_pred             cCCCeEEEeccchHHHHHH
Q 043521           43 INAKNTMEIGVYTGYSLLY   61 (71)
Q Consensus        43 ~~~k~iLEIGT~~GySal~   61 (71)
                      .+.+++||||||+|..++.
T Consensus        53 ~~g~~vLDiGcG~g~~~~~   71 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLL   71 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGT
T ss_pred             CCCcEEEEeccCCCHHHHH
Confidence            4567999999999955543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=86.81  E-value=0.32  Score=29.71  Aligned_cols=39  Identities=10%  Similarity=-0.024  Sum_probs=28.2

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHh
Q 043521           26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTAL   64 (71)
Q Consensus        26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~   64 (71)
                      |..+.-.-.++..|-....-.+|||++||+|.-++..++
T Consensus        25 Pt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~gieals   63 (183)
T d2fpoa1          25 PTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALS   63 (183)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHH
T ss_pred             cCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEe
Confidence            444444456677776777888999999999999996443

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=86.41  E-value=0.36  Score=31.83  Aligned_cols=25  Identities=20%  Similarity=0.127  Sum_probs=21.5

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhh
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ...+..+++|+|||+|..++.+++.
T Consensus       107 ~~~~~~~vld~g~GsG~i~~~la~~  131 (271)
T d1nv8a_         107 RKYGIKTVADIGTGSGAIGVSVAKF  131 (271)
T ss_dssp             HHHTCCEEEEESCTTSHHHHHHHHH
T ss_pred             ccccccEEEEeeeeeehhhhhhhhc
Confidence            4577889999999999999998864

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=86.35  E-value=0.14  Score=33.49  Aligned_cols=62  Identities=11%  Similarity=0.288  Sum_probs=36.5

Q ss_pred             hHHHHHHhhhhhhhhcCcCCCCCHH--HHHHHHHHHHh-----cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521            7 FFFYFVYFSQHIDGMRRNHMLSTPD--EAQFLSMLLKL-----INAKNTMEIGVYTGYSLLYTALAIPD   68 (71)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~i~~~--~g~~L~~l~~~-----~~~k~iLEIGT~~GySal~lA~al~~   68 (71)
                      +.-|.+...+....+.+=...-..+  .-.++..+.-.     .+.++++|||||.|.=++-+|-..|+
T Consensus        26 l~~y~~lL~~wN~~~NLts~~~~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~   94 (239)
T d1xdza_          26 FELYYDMLVEWNEKINLTSITEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPH   94 (239)
T ss_dssp             HHHHHHHHHHHHHHSCCCSCCSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTT
T ss_pred             HHHHHHHHHHhcCceEEEecCCHHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCC
Confidence            4445555555544444422221111  23344444221     25679999999999999999987774

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=86.13  E-value=0.23  Score=33.06  Aligned_cols=28  Identities=18%  Similarity=0.303  Sum_probs=23.4

Q ss_pred             HHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521           38 MLLKLINAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        38 ~l~~~~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .+++..+-++||+++|++|..++.+|.+
T Consensus       139 ~~~~~~~g~rVLDl~~gtG~~s~~~a~g  166 (318)
T d1wxxa2         139 LYMERFRGERALDVFSYAGGFALHLALG  166 (318)
T ss_dssp             HHGGGCCEEEEEEETCTTTHHHHHHHHH
T ss_pred             HHHHHhCCCeeeccCCCCcHHHHHHHhc
Confidence            4455667889999999999999998864

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=84.52  E-value=0.26  Score=33.24  Aligned_cols=22  Identities=23%  Similarity=0.172  Sum_probs=17.7

Q ss_pred             CeEEEeccchHHHHHHHHhhCC
Q 043521           46 KNTMEIGVYTGYSLLYTALAIP   67 (71)
Q Consensus        46 k~iLEIGT~~GySal~lA~al~   67 (71)
                      .+|||+|.|.|..+.-+.+.+.
T Consensus        81 ~~ivE~GaG~G~La~dil~~l~  102 (365)
T d1zkda1          81 LRLIEIGPGRGTMMADALRALR  102 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHT
T ss_pred             ceEEecCCcccHHHHhhhhhhc
Confidence            4799999999998877766543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=83.41  E-value=0.43  Score=31.89  Aligned_cols=26  Identities=15%  Similarity=0.015  Sum_probs=22.0

Q ss_pred             HhcCCCeEEEeccchHHHHHHHHhhC
Q 043521           41 KLINAKNTMEIGVYTGYSLLYTALAI   66 (71)
Q Consensus        41 ~~~~~k~iLEIGT~~GySal~lA~al   66 (71)
                      ...+|++||.||.|.|..+.++++.-
T Consensus        74 ~~~~pk~VLiiG~G~G~~~~~ll~~~   99 (312)
T d1uira_          74 THPEPKRVLIVGGGEGATLREVLKHP   99 (312)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTST
T ss_pred             hCCCcceEEEeCCCchHHHHHHHhcC
Confidence            34689999999999999998887653

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=82.72  E-value=0.4  Score=31.82  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.6

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      +-++|||+||++|..++.+|.+
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~  166 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIA  166 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT
T ss_pred             CCCeeecccCcccchhhhhhhc
Confidence            4579999999999999999875

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=81.77  E-value=0.66  Score=31.22  Aligned_cols=34  Identities=21%  Similarity=0.197  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHh-cCCCeEEEeccchHHHHHHHHhh
Q 043521           32 EAQFLSMLLKL-INAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        32 ~g~~L~~l~~~-~~~k~iLEIGT~~GySal~lA~a   65 (71)
                      .-+++..++.. .+.++||++.|++|..++.+|.+
T Consensus       119 nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~  153 (309)
T d2igta1         119 HWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA  153 (309)
T ss_dssp             HHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT
T ss_pred             HHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC
Confidence            34555555544 56889999999999999998864

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.57  E-value=0.48  Score=31.60  Aligned_cols=22  Identities=5%  Similarity=-0.112  Sum_probs=18.8

Q ss_pred             CCCeEEEeccchHHHHHHHHhh
Q 043521           44 NAKNTMEIGVYTGYSLLYTALA   65 (71)
Q Consensus        44 ~~k~iLEIGT~~GySal~lA~a   65 (71)
                      ....|||||.|.|..|..|...
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~   64 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNK   64 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhc
Confidence            4557999999999999998764