Citrus Sinensis ID: 043587

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MSSLLLSYNDLPSKLKRCYLSAEEDEEMETIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKACRLESLKNLEHLQICGIRRLGYVSD
Secondary Structure (PSIPRED)
cccEEccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEccccccccEEEEcHHHHHHHHHHHHHcEEEEEEcccccccccccccccEEEEEEEEccccccccccccccccEEEEEcccccccccccHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcHccccHHHHHHHHEEcccccHHHHHHHHHHHHHHHHcccccccccccccEEEEHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEEEEEccccccHHHHHcccccEEEEEcccccccccccHHHHHHHHHHHccEEEEEcccccccccccHHHccccHHHHHHEEEEEcccccHHcccHHHHHHHHHHHEEHcccHHHHHccHHHHHcccccEEEccccccHHcccccccccHHHcccccEEccccHHHHHHHHHHccEEEcccccccc
Coil and Loop (DISEMBL)
msslllsyndlpsklkrcylsaeedEEMETIGEEyfgilaprsFFQEFEKSYDNRIIKCKMHDMVHDFAQFVseneclsleingseeldvtnsLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLidggrsdhsslnGEILEELFRELTSLRALDfcesyhsrssltpeiprNIEKLVHLRYLSLSFQHIEKLPETLCELynletldisgcfdleelpkGIGKLVNMKHllnsrtssvrympvgigrltglrtlgEFTKACRLESLKNLEHLQICGirrlgyvsd
Flexible Loop (DISEMBL)
msslllsyndlpsklkRCYLSAEEDEEMETIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDEKVRHLMLiigegaifpvstrRIKRMRSllidggrsdhsslnGEILEELFRELTSLRALDFCESyhsrssltpeiprNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLnsrtssvrympVGIGRLTGLRTLGEFTKACRLEslknlehlqicgirrlgyvsd
Low Complexity Region (SEG)
MSSLLLSYNDLPSKLKRCYLSAeedeemetigeeYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIgrltglrtlgEFTKACRLESLKNLEHLQICGIRRLGYVSD
Disordered region (IsUnstruct)
**************LKRCYLS******METIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGG*****SLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKACRLESLKNLEHLQICGIRRLGYV**
Disordered Region (DISOPRED)
MSSLLLSYNDLPSKLKRCYLSAEEDEEMETIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEEL*V*NSLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKACRLESLKNLEHLQICGIRRLGYVS*
Disordered Region (DISEMBL)
MSSLLLSYNDLPSKLKRCYLSAEEDEEMETIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKACRLESLKNLEHLQICGIRRLGYVSD
Disordered Region (DISPRO)
MSSLLLSYNDLPSKLKRCYLSAEEDEEMETIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKACRLESLKNLEHLQICGIRRLGY***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLLLSYNDLPSKLKRCYLSAEEDEEMETIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKACRLESLKNLEHLQICGIRRLGYVSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.884	0.176	0.303	1e-21
Q9LRR4	1054	Putative disease resistan	no	no	0.912	0.246	0.302	1e-20
Q7XA39	988	Putative disease resistan	N/A	no	0.796	0.229	0.298	2e-20
Q7XBQ9	970	Disease resistance protei	N/A	no	0.778	0.228	0.290	1e-18
Q7XA40	992	Putative disease resistan	N/A	no	0.824	0.236	0.304	2e-18
Q38834	852	Disease resistance RPP13-	no	no	0.894	0.299	0.287	3e-16
Q7XA42	979	Putative disease resistan	N/A	no	0.824	0.240	0.295	3e-15
Q9STE7	847	Putative disease resistan	no	no	0.785	0.264	0.276	4e-11
Q39214	926	Disease resistance protei	no	no	0.750	0.231	0.275	2e-09
Q9LZ25	811	Probable disease resistan	no	no	0.364	0.128	0.345	3e-07

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 143/306 (46%), Gaps = 54/306 (17%)

Query: 4   LLLSYNDLPSKLKRCYL---------------------------SAEEDEEMETIGEEYF 36
           L LSY+ LP +LKRC+                                   +E IG +Y 
Sbjct: 407 LKLSYDSLPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYL 466

Query: 37  GILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDE 96
           G L  +SFFQ  + +  + +    MHD+++D A+ VS + C  LE +   E+  T     
Sbjct: 467 GDLVAQSFFQRLDITMTSFV----MHDLMNDLAKAVSGDFCFRLEDDNIPEIPST----- 517

Query: 97  KVRHLMLIIGEGAIFPVSTRRI---KRMRSLLIDGGRSDHSSLN--GEILEELFRELTSL 151
             RH      +     V+ R I   + +R++L     +   SL    ++L  L   L+ L
Sbjct: 518 -TRHFSFSRSQCDA-SVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGL 575

Query: 152 RALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGC 211
           R L    S++  ++L    P++++ L  LRYL LS   I++LPE +C L NL+TL +S C
Sbjct: 576 RILSL--SHYQITNL----PKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNC 629

Query: 212 FDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT----KACRLESLK 267
            DL  LPK I +L+N++ LL+   + +  MP GI +L  L+ L  F         L  LK
Sbjct: 630 RDLTSLPKSIAELINLR-LLDLVGTPLVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELK 688

Query: 268 NLEHLQ 273
            L HL+
Sbjct: 689 ELSHLR 694

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 152/324 (46%), Gaps = 64/324 (19%)

Query: 4   LLLSYNDLPSKLKRCYL---------SAEED------------------EEMETIGEEYF 36
           L +SY  LP+ LKRC+          + E+D                  + +E +G EYF
Sbjct: 415 LRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYF 474

Query: 37  GILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDE 96
             L  RS  Q+ +  Y        MHD +++ AQF S       E +   E      + E
Sbjct: 475 SELESRSLLQKTKTRY-------IMHDFINELAQFASG------EFSSKFEDGCKLQVSE 521

Query: 97  KVRHLMLI---IGEGAIFPVSTRRIKRMRSL----LIDGGRSDHSSLNGEILEELFRELT 149
           + R+L  +     E   F  + R +K +R+     L +  RS    L+  + E+L   LT
Sbjct: 522 RTRYLSYLRDNYAEPMEFE-ALREVKFLRTFLPLSLTNSSRS--CCLDQMVSEKLLPTLT 578

Query: 150 SLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDIS 209
            LR L    S++  + L P+  +NI    H R+L LS   +EKLP++LC +YNL+TL +S
Sbjct: 579 RLRVLSL--SHYKIARLPPDFFKNIS---HARFLDLSRTELEKLPKSLCYMYNLQTLLLS 633

Query: 210 GCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEF----TKACRLES 265
            C  L+ELP  I  L+N+++ L+   + +R MP   GRL  L+TL  F    +   R+  
Sbjct: 634 YCSSLKELPTDISNLINLRY-LDLIGTKLRQMPRRFGRLKSLQTLTTFFVSASDGSRISE 692

Query: 266 LKNLE----HLQICGIRRLGYVSD 285
           L  L      L+I  ++R+  V+D
Sbjct: 693 LGGLHDLHGKLKIVELQRVVDVAD 716

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 133/308 (43%), Gaps = 81/308 (26%)

Query: 1   MSSLLLSYNDLPSKLKRCY--------------------------LSAEEDEEMETIGEE 34
           + +L LSY+ LP  L++C+                          L ++ + E+E +G E
Sbjct: 390 LPALRLSYHHLPLDLRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKGNLELEDVGNE 449

Query: 35  YFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQ--FVSENECLSLEINGSEELDVTN 92
            +  L  RSFFQE E    N   K  +HD++HD A   F +   C               
Sbjct: 450 VWNELYLRSFFQEIEAKSGNTYFK--IHDLIHDLATSLFSASASC--------------- 492

Query: 93  SLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLR 152
                          G I  ++ +  K   S+      S +S         L ++  SLR
Sbjct: 493 ---------------GNIREINVKDYKHTVSIGFAAVVSSYSP-------SLLKKFVSLR 530

Query: 153 ALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCF 212
            L+   SY    S   ++P +I  L+HLRYL LS  +   LPE LC+L NL+TLD+  C+
Sbjct: 531 VLNL--SY----SKLEQLPSSIGDLLHLRYLDLSCNNFRSLPERLCKLQNLQTLDVHNCY 584

Query: 213 DLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEF----TKACRLESLKN 268
            L  LPK   KL +++HL+      +   P  IG LT L+TLG F     K  +L  LKN
Sbjct: 585 SLNCLPKQTSKLSSLRHLV-VDGCPLTSTPPRIGLLTCLKTLGFFIVGSKKGYQLGELKN 643

Query: 269 LEHLQICG 276
              L +CG
Sbjct: 644 ---LNLCG 648

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 133/303 (43%), Gaps = 81/303 (26%)

Query: 1   MSSLLLSYNDLPSKLKRCY--------------------------LSAEEDEEMETIGEE 34
           + +L LSY+ LP  LK+C+                          L ++ + E+E +G+E
Sbjct: 389 LPALRLSYHQLPLDLKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKGNMELEDVGDE 448

Query: 35  YFGILAPRSFFQEFE----KSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDV 90
            +  L  RSFFQE E    K+Y       KMHD++HD A         SL    +   ++
Sbjct: 449 VWKELYLRSFFQEIEVKDGKTY------FKMHDLIHDLAT--------SLFSANTSSSNI 494

Query: 91  TNSLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTS 150
                    H+M I     +F  +   +++                             S
Sbjct: 495 REINKHSYTHMMSIGFAEVVFFYTLPPLEK---------------------------FIS 527

Query: 151 LRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISG 210
           LR L+  +S  ++      +P +I  LVHLRYL+L    +  LP+ LC+L NL+TLD+  
Sbjct: 528 LRVLNLGDSTFNK------LPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLDLQY 581

Query: 211 CFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT----KACRLESL 266
           C  L  LPK   KL ++++LL   + S+  MP  IG LT L+TLG+F     K  +L  L
Sbjct: 582 CTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGEL 641

Query: 267 KNL 269
            NL
Sbjct: 642 GNL 644

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 133/299 (44%), Gaps = 64/299 (21%)

Query: 1   MSSLLLSYNDLPSKLKRCY--------------------------LSAEEDEEMETIGEE 34
           + +L LSY+ LP  L++C+                          L ++ + E+E +G E
Sbjct: 388 LPALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKGNMELEDVGNE 447

Query: 35  YFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSL 94
            +  L  RSFFQE E        K  MHD++HD A  +      S  I    +++V +  
Sbjct: 448 VWNELYLRSFFQEIEVKSGKTYFK--MHDLIHDLATSMFSASASSRSI---RQINVKDDE 502

Query: 95  DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRAL 154
           D     +M I+             K M S+      S +S         LF+   SLR L
Sbjct: 503 D-----MMFIV----------TNYKDMMSIGFSEVVSSYSP-------SLFKRFVSLRVL 540

Query: 155 DFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDL 214
           +   S         ++P ++  LVHLRYL LS   I  LP+ LC+L NL+TLD+  C  L
Sbjct: 541 NLSNSEFE------QLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSL 594

Query: 215 EELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT----KACRLESLKNL 269
             LPK   KL ++++L+      +  MP  IG LT L+TLG F     K  +L  L+NL
Sbjct: 595 SCLPKQTSKLCSLRNLVLDHC-PLTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNL 652

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 132/313 (42%), Gaps = 58/313 (18%)

Query: 1   MSSLLLSYNDLPSKLKRCYLSAEEDEEMETI--------------------------GEE 34
           MSSL LSY++LPS LK C L+     E   I                          GE+
Sbjct: 401 MSSLQLSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRNGRSATESGED 460

Query: 35  YFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLS-LEINGSEELDVTNS 93
            F  L  R   +  +K+Y   II CK+HDMV D    +++ +  S  E      L ++ +
Sbjct: 461 CFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLVIDIAKKDSFSNPEGLNCRHLGISGN 520

Query: 94  LDEK---VRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTS 150
            DEK   V H +     G +    T  + ++ S                 L + F +   
Sbjct: 521 FDEKQIKVNHKL----RGVVSTTKTGEVNKLNS----------------DLAKKFTDCKY 560

Query: 151 LRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQH-IEKLPETLCELYNLETLDIS 209
           LR LD  +S     +   EI   I  L HL  LSLS  H + + P ++ +L+NL+ LD S
Sbjct: 561 LRVLDISKSIFD--APLSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILDAS 618

Query: 210 GCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKA-----CRLE 264
            C +L++L   I     +  L  +   S+   P GIG L  L  L  F  A     C+L 
Sbjct: 619 YCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNGCKLS 678

Query: 265 SLKNLEHLQICGI 277
            +KNL +L+  G+
Sbjct: 679 EVKNLTNLRKLGL 691

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 136/318 (42%), Gaps = 83/318 (26%)

Query: 1   MSSLLLSYNDLPSKLKRCY--------------------------LSAEEDEEMETIGEE 34
           + +L LSY+ LP  L++C+                          L ++ + E+E +G E
Sbjct: 388 LPALRLSYHHLPLDLRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKGNLELEDVGNE 447

Query: 35  YFGILAPRSFFQEFE----KSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDV 90
            +  L  RSFFQE E    K+Y       KMHD++HD A         S   + S   ++
Sbjct: 448 VWNELYLRSFFQEIEVESGKTY------FKMHDLIHDLA-----TSLFSANTSSSNIREI 496

Query: 91  TNSLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTS 150
             + D      M+ IG   +                    S +S         L ++  S
Sbjct: 497 NANYD----GYMMSIGFAEVV-------------------SSYSP-------SLLQKFVS 526

Query: 151 LRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQ-HIEKLPETLCELYNLETLDIS 209
           LR L+       R+S   ++P +I  LVHLRYL LS    I  LP+ LC+L NL+TLD+ 
Sbjct: 527 LRVLNL------RNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLH 580

Query: 210 GCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT----KACRLES 265
            C  L  LPK   KL ++++LL     S+   P  IG LT L++L  F     K  +L  
Sbjct: 581 YCDSLSCLPKQTSKLGSLRNLLLD-GCSLTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGE 639

Query: 266 LKNLEHLQICGIRRLGYV 283
           LKNL       I +L  V
Sbjct: 640 LKNLNLYGSISITKLDRV 657

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9STE7|R13L3_ARATH Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 124/268 (46%), Gaps = 44/268 (16%)

Query: 23  EEDEEM--ETIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSL 80
           +EDEEM  E +   Y   L  RS  +  E+    +++ C++HD++ D A           
Sbjct: 449 QEDEEMMMEDVARCYIDELVDRSLVKA-ERIERGKVMSCRIHDLLRDLA----------- 496

Query: 81  EINGSEELDVTNSLDEK-----------VRHLMLIIGEGAIFPVSTRRI-KRMRSLLIDG 128
            I  ++EL+  N  +EK           V HLM        + +  RR+ KRMRS L  G
Sbjct: 497 -IKKAKELNFVNVYNEKQHSSDICRREVVHHLM------NDYYLCDRRVNKRMRSFLFIG 549

Query: 129 GRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQ 188
            R     +N   L+     L  LR L+         +++  +P  I +L+HLRYL ++  
Sbjct: 550 ERRGFGYVNTTNLK-----LKLLRVLNMEGLLFVSKNISNTLPDVIGELIHLRYLGIADT 604

Query: 189 HIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIG-R 247
           ++  LP ++  L  L+TLD SG  D  +    + KL +++H++           +G G  
Sbjct: 605 YVSILPASISNLRFLQTLDASGN-DPFQYTTDLSKLTSLRHVIGKFVGEC---LIGEGVN 660

Query: 248 LTGLRTLGEFTKA-CRLESLKNLEHLQI 274
           L  LR++  ++ +    E L+NL+ L+I
Sbjct: 661 LQTLRSISSYSWSKLNHELLRNLQDLEI 688

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 111/261 (42%), Gaps = 47/261 (18%)

Query: 2   SSLLLSYNDLPSKLKRCYLSAE--------------------------EDEEMETIGEEY 35
           S + LS+NDLP  LKRC+L                                + E + + Y
Sbjct: 418 SIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSY 477

Query: 36  FGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLD 95
              L  R+  Q    +   R    KMHD++ + A  VS+ E      N   + D      
Sbjct: 478 LNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETM 537

Query: 96  EKV--RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRA 153
           E    RHL +   +  + P S R    + SLL+    + H         EL   L  LRA
Sbjct: 538 ENYGSRHLCI---QKEMTPDSIRATN-LHSLLV-CSSAKHKM-------ELLPSLNLLRA 585

Query: 154 LDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFD 213
           LD  +S  S+      +P  +  + +L+YL+LS   +++LP+   +L NLETL+      
Sbjct: 586 LDLEDSSISK------LPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHS-K 638

Query: 214 LEELPKGIGKLVNMKHLLNSR 234
           +EELP G+ KL  +++L+  R
Sbjct: 639 IEELPLGMWKLKKLRYLITFR 659

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ25|DRL30_ARATH Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 9/113 (7%)

Query: 169 EIPRNIEKLVHLRYLSLSFQH-IEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNM 227
           E+P+N+ KL  L+ L L   H +  LP  +CEL  L+ +DIS C  L  LP+ IGK+  +
Sbjct: 690 ELPKNLSKLKALQLLRLYACHELNSLPVEICELPRLKYVDISQCVSLSSLPEKIGKVKTL 749

Query: 228 KHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKACRLESLKNLEHLQ--ICGIR 278
           +  +++R  S+  +P  +  LT LR +      C  E+L   E +Q  + G+R
Sbjct: 750 EK-IDTRECSLSSIPNSVVLLTSLRHV-----ICDREALWMWEKVQKAVAGLR 796

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
359482794	880	PREDICTED: putative disease resistance p	0.943	0.305	0.419	9e-57
147825450	927	hypothetical protein VITISV_000086 [Viti	0.954	0.293	0.409	1e-54
224122696	906	cc-nbs-lrr resistance protein [Populus t	0.936	0.294	0.424	3e-52
359482784	919	PREDICTED: putative disease resistance p	0.891	0.276	0.407	9e-52
224114824	941	cc-nbs-lrr resistance protein [Populus t	0.898	0.272	0.406	1e-51
147843549	970	hypothetical protein VITISV_000507 [Viti	0.905	0.265	0.414	5e-51
297743527	613	unnamed protein product [Vitis vinifera]	0.961	0.446	0.394	5e-51
359482769	904	PREDICTED: putative disease resistance p	0.891	0.280	0.394	3e-50
359482788	903	PREDICTED: putative disease resistance p	0.915	0.289	0.401	6e-50
359482790	923	PREDICTED: putative disease resistance p	0.894	0.276	0.390	6e-50

>gi|359482794|ref|XP_002268547.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 132/315 (41%), Positives = 192/315 (60%), Gaps = 46/315 (14%)

Query: 3   SLLLSYNDLPSKLKRC--------------------------YLSAEEDEEMETIGEEYF 36
           +LLLSY DLP  +KRC                          YL+++  +EME +G EYF
Sbjct: 394 ALLLSYYDLPPAIKRCFSFCAVFPKDSVIKIDELIRLWMAQNYLNSDASKEMEMVGREYF 453

Query: 37  GILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDE 96
             LA RSFFQ+FEK  D+ II+CKMHD+VHDFAQF+++NEC  + +  +EE     S  +
Sbjct: 454 EYLAARSFFQDFEKDGDDDIIRCKMHDIVHDFAQFLTKNECFIMNVENAEEGRTKTSF-Q 512

Query: 97  KVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDF 156
           K+RH  LI  +     VST ++K + +LL+   +   SS + E L  LF+ LT LRAL+ 
Sbjct: 513 KIRHATLIGQQRYPNFVSTYKMKNLHTLLL---KFTFSSTSDEALPNLFQHLTCLRALNL 569

Query: 157 CESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQH-IEKLPETLCELYNLETLDISGCFDLE 215
                +R+ L  E+P+ + KL+HL+YLSLS  H + +LPET+C+LYNL+TL+IS CF L 
Sbjct: 570 -----ARNPLIMELPKAVGKLIHLKYLSLSDCHKLRELPETICDLYNLQTLNISRCFSLV 624

Query: 216 ELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKA------CRLESLKNL 269
           ELP+ +GKL+N++HL N     ++ +P GI RL  L+TL EF  +      C++  L+NL
Sbjct: 625 ELPQAMGKLINLRHLQNCGALDLKGLPKGIARLNSLQTLEEFVVSSDGDAECKIGDLRNL 684

Query: 270 EH----LQICGIRRL 280
            +    L+I G+R++
Sbjct: 685 NNLRGELEIRGLRKV 699

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147825450|emb|CAN71072.1| hypothetical protein VITISV_000086 [Vitis vinifera]

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 131/320 (40%), Positives = 191/320 (59%), Gaps = 48/320 (15%)

Query: 3   SLLLSYNDLPSKLKRC--------------------------YLSAEEDEEMETIGEEYF 36
           +LLLSY+DLP +++RC                          YL+++  +EME +G  YF
Sbjct: 412 ALLLSYHDLPPEIQRCFSFCAVFPKDSVIWSDELIKLWMAQSYLNSDRSKEMEMVGRTYF 471

Query: 37  GILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLD- 95
             LA RSFFQ+FEK  D  II CKMHD+VHDFAQF+++NEC  +E++  ++     S+D 
Sbjct: 472 EYLAARSFFQDFEKDDDGNIICCKMHDIVHDFAQFLTQNECFIVEVDNQKK----GSMDL 527

Query: 96  --EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRA 153
             +K+RH  L++ E      ST  +K + +LL         S   E L  L R LT LRA
Sbjct: 528 FFQKIRHATLVVRESTPNFASTCNMKNLHTLL--AKEEFBISXVLEALXNLLRHLTCLRA 585

Query: 154 LDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQH-IEKLPETLCELYNLETLDISGCF 212
           LD      SR+ L  E+P+ + KL+HLRYL+LS  + + +LPET+C+LYNL+TL+I GC 
Sbjct: 586 LDL-----SRNRLIEELPKEVGKLIHLRYLNLSLCYRLRELPETICDLYNLQTLNIEGCS 640

Query: 213 DLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKA------CRLESL 266
            L++LP+ +GKL+N++HL N  T S++ +P GIGRL+ L+TL  F  +      C++  L
Sbjct: 641 SLQKLPQAMGKLINLRHLENCNTGSLKGLPKGIGRLSSLQTLDVFIVSSHGNDECQIGDL 700

Query: 267 KNLEHLQ-ICGIRRLGYVSD 285
           +NL +L+    I+RL  V D
Sbjct: 701 RNLNNLRGGLSIQRLDEVKD 720

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122696|ref|XP_002318903.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859576|gb|EEE97123.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/318 (42%), Positives = 192/318 (60%), Gaps = 51/318 (16%)

Query: 4   LLLSYNDLPSKLKRCYLSAE---------EDE-----------------EMETIGEEYFG 37
           LLLSY DLPS ++RC+L            +DE                 +ME +GE+YF 
Sbjct: 368 LLLSYYDLPSVVRRCFLYCAMFPKDYEMVKDELVKMWMAQGYLKETSGGDMELVGEQYFQ 427

Query: 38  ILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDEK 97
           +LA RSFFQ+FE   D  +   KMHD+VHDFAQ++++NECL++++N      V  S+ E+
Sbjct: 428 VLAARSFFQDFETDEDEGMT-FKMHDIVHDFAQYMTKNECLTVDVNTLGGATVETSI-ER 485

Query: 98  VRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFC 157
           VRHL +++     FPVS  + K +RSLLID   +   SL G  L +LF++LT +R+L+  
Sbjct: 486 VRHLSMMLPNETSFPVSIHKAKGLRSLLID---TRDPSL-GAALPDLFKQLTCIRSLNL- 540

Query: 158 ESYHSRSSLTPEIPRNIEKLVHLRYLSLSF-QHIEKLPETLCELYNLETLDISGCFDLEE 216
               SRS +  EIP  + KL+HLR+L+L++   +E LPET+C+L NL++LD++ C  L+E
Sbjct: 541 ----SRSQIK-EIPNEVGKLIHLRHLNLAWCVELESLPETICDLCNLQSLDVTWCRSLKE 595

Query: 217 LPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---------KACRLESLK 267
           LPK IGKL+ ++HL    +S V ++P GI R+T LRTL +FT         KA  L  LK
Sbjct: 596 LPKAIGKLIKLRHLWID-SSGVAFIPKGIERITCLRTLDKFTVCGGGENESKAANLRELK 654

Query: 268 NLEHLQICGIRRLGYVSD 285
           NL H  I G  R+  V D
Sbjct: 655 NLNH--IGGSLRIDKVRD 670

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482784|ref|XP_002269044.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 125/307 (40%), Positives = 184/307 (59%), Gaps = 53/307 (17%)

Query: 3   SLLLSYNDLPSKLKRC--------------------------YLSAEEDEEMETIGEEYF 36
           +LLLSY DLP  +KRC                          YL ++  +EME +G EYF
Sbjct: 412 ALLLSYYDLPPTIKRCFSFCAVFPKDSVIERDELIKLWMAQSYLKSDGSKEMEMVGREYF 471

Query: 37  GILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLD- 95
             LA RSFFQ+FEK  D+ II+CKMHD+VHDFAQF+++NEC  +E++  ++     S+D 
Sbjct: 472 EYLAARSFFQDFEKDGDDDIIRCKMHDIVHDFAQFLTQNECFVVEVDNQKK----GSMDL 527

Query: 96  --EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRA 153
             +K+ H  L++ E  +   ST  +K + +LL        S+ +  +LE L   LT LRA
Sbjct: 528 FFQKICHATLVVQESTLNFASTCNMKNLHTLLA------KSAFDSRVLEAL-GHLTCLRA 580

Query: 154 LDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLS-FQHIEKLPETLCELYNLETLDISGCF 212
           LD      S + L  E+P+ + KL+HLRYL LS  Q + +LPET+C+LYNL+TL+I  C 
Sbjct: 581 LDL-----SWNQLIEELPKEVGKLIHLRYLDLSRCQSLRELPETICDLYNLQTLNIQYCI 635

Query: 213 DLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKA------CRLESL 266
            L++LP+ +GKL+N++HL N  T S++ +P GIGRL+ L+TL  F  +      C++  L
Sbjct: 636 SLQKLPQAMGKLINLRHLENY-TRSLKGLPKGIGRLSSLQTLDVFIVSSHGNDECQIGDL 694

Query: 267 KNLEHLQ 273
           +NL +L+
Sbjct: 695 RNLNNLR 701

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114824|ref|XP_002332291.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222832453|gb|EEE70930.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/305 (40%), Positives = 177/305 (58%), Gaps = 49/305 (16%)

Query: 4   LLLSYNDLPSKLKRC--------------------------YLSAEEDEEMETIGEEYFG 37
           LLLSY DLPS ++RC                          YL      +ME +GE+YF 
Sbjct: 415 LLLSYYDLPSMVRRCFLYCAMFPKDYEMRKYELVKMWIAQGYLKETSGGDMEAVGEQYFQ 474

Query: 38  ILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDEK 97
           +LA RSFFQ+F K+YD   ++ KMHD+VHDFAQ++++NECL++++N   E  V  S+ E+
Sbjct: 475 VLAARSFFQDF-KTYDREDVRFKMHDIVHDFAQYMTKNECLTVDVNNLREATVETSI-ER 532

Query: 98  VRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFC 157
           VRHL +++ +   FPVS  + K +RSL ID          G  L ++F++LT +R+L+  
Sbjct: 533 VRHLSMMLSKETYFPVSIHKAKGLRSLFIDA----RDPWLGAALPDVFKQLTCIRSLNLS 588

Query: 158 ESYHSRSSLTPEIPRNIEKLVHLRYLSLS-FQHIEKLPETLCELYNLETLDISGCFDLEE 216
                  SL  EIP  + KL+HLR+L+L+    +E LPE +C+L  L++LD++ C  L E
Sbjct: 589 ------MSLIKEIPNEVGKLIHLRHLNLADCYKLESLPEIMCDLCKLQSLDVTTCRSLWE 642

Query: 217 LPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEF---------TKACRLESLK 267
           LPK IGKL+ ++HL     S V +MP GI R+T LRTL  F         +KA  L  LK
Sbjct: 643 LPKAIGKLIKLRHLRIC-GSIVAFMPKGIERITCLRTLDWFAVCGGGEDESKAANLRELK 701

Query: 268 NLEHL 272
           NL H+
Sbjct: 702 NLNHI 706

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843549|emb|CAN79463.1| hypothetical protein VITISV_000507 [Vitis vinifera]

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 126/304 (41%), Positives = 181/304 (59%), Gaps = 46/304 (15%)

Query: 3   SLLLSYNDLPSKLKRC--------------------------YLSAEEDEEMETIGEEYF 36
           +LLLSY DLP  +KRC                          YL++   +EME +G EYF
Sbjct: 443 ALLLSYYDLPPAIKRCFSFCAVFPKDSVIEIDKLIKLWMAQDYLNSNASKEMEMVGREYF 502

Query: 37  GILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDE 96
             LA RSFFQ+FEK  D+ II+CKMHD+VH FAQF+++NEC  +   G      T +  +
Sbjct: 503 EYLAARSFFQDFEKDGDDNIIRCKMHDIVHSFAQFLTKNECCIMNEEGR-----TKTSFQ 557

Query: 97  KVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDF 156
           K+RH  LI  +     VST ++K +R+LL++      SS++ E L  LF+ LT LR LD 
Sbjct: 558 KIRHATLIGQQRHPNFVSTYKMKNLRTLLLEFAVV--SSID-EALPNLFQHLTCLRVLDL 614

Query: 157 CESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQH-IEKLPETLCELYNLETLDISGCFDLE 215
                +R+    E+P+ IEKL+HL+YL+LS  H + +LPE +C+LYNL+TL+I GC  L 
Sbjct: 615 -----ARNLSRKELPKAIEKLIHLKYLNLSHCHELRELPEAICDLYNLQTLNIRGCDSLV 669

Query: 216 ELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKA------CRLESLKNL 269
           +LP+ +GKL+N++HL N  T  ++ +P GI RL  L+TL +FT +      C +  L NL
Sbjct: 670 QLPQAMGKLINLRHLQNFLTILLKGLPKGISRLNSLQTLEKFTVSSDGHNECNIGDLGNL 729

Query: 270 EHLQ 273
            +L+
Sbjct: 730 SNLR 733

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743527|emb|CBI36394.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/317 (39%), Positives = 183/317 (57%), Gaps = 43/317 (13%)

Query: 3   SLLLSYNDLPSKLKRC--------------------------YLSAEEDEEMETIGEEYF 36
           +LLLSY DLP  ++RC                          YL ++  +EME +G  YF
Sbjct: 94  ALLLSYYDLPPAIQRCFSFCAVFPKDSVIERDELIKLWMAQSYLKSDGRKEMEMVGRTYF 153

Query: 37  GILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDE 96
             LA RSFFQ+FEK  D  II+CKMHD+VHDFAQF+++NEC  +E++  +   +  S  +
Sbjct: 154 EYLAARSFFQDFEKYDDGNIIRCKMHDIVHDFAQFLTQNECFIVEVDNQQMESIDLSF-K 212

Query: 97  KVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDF 156
           K+RH  L++ E      ST  +K + +LL    +   +S   + L  L R LT L+ALD 
Sbjct: 213 KIRHTTLVVRESTPNFTSTYNMKNLHTLL---AKEAFNSRVFKALPNLLRHLTCLKALDL 269

Query: 157 CESYHSRSSLTPEIPRNIEKLVHLRYLSLSF-QHIEKLPETLCELYNLETLDISGCFDLE 215
                S + L  E+PR + KL+HLRYL+LS    + +LPET+C+LYNL+TL+I  C  L+
Sbjct: 270 -----SSNQLIEELPREVGKLIHLRYLNLSLCLSLRELPETICDLYNLQTLNIQVCESLQ 324

Query: 216 ELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKA------CRLESLKNL 269
           +LP+ +GKL+N++HL N    +   +P GIGRL+ LRTL  F  +      C++  L+NL
Sbjct: 325 KLPQAMGKLINLRHLENGFVDTREGLPKGIGRLSSLRTLDVFIVSSHGNDECQIGDLRNL 384

Query: 270 EHLQ-ICGIRRLGYVSD 285
            +L+    I++L  V D
Sbjct: 385 NNLRGHLSIQQLDKVKD 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482769|ref|XP_003632834.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/307 (39%), Positives = 182/307 (59%), Gaps = 53/307 (17%)

Query: 3   SLLLSYNDLPSKLKRC--------------------------YLSAEEDEEMETIGEEYF 36
           +LLLSY DLP  ++RC                          YL ++  +EME +G  YF
Sbjct: 393 ALLLSYYDLPPAIQRCFSFCAVFPKDSVIVRAELIKLWMAQSYLKSDGRKEMEMVGRTYF 452

Query: 37  GILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLD- 95
             LA RSFFQ+FEK  D  II+C+MHD+VHDFAQF+++NEC  +E++  ++     S+D 
Sbjct: 453 EYLAARSFFQDFEKDTDGNIIRCEMHDIVHDFAQFLTQNECFIVEVDNQKK----GSMDL 508

Query: 96  --EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRA 153
             +K+RH  L++ E      ST  +K + +LL         + +  +LE L   LT LRA
Sbjct: 509 FFQKIRHATLVVRESTPNFASTCNMKNLHTLLA------KEAFDSRVLEAL-GNLTCLRA 561

Query: 154 LDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSF-QHIEKLPETLCELYNLETLDISGCF 212
           LD      S +    E+P+ + KL+HLRYL+LS+ + + +LPET+C+LYNL+TL+I GC 
Sbjct: 562 LDL-----SSNDWIEELPKEVGKLIHLRYLNLSWCESLRELPETICDLYNLQTLNIEGCS 616

Query: 213 DLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKA------CRLESL 266
            L++LP  +GKL+N++HL N  T S++ +P GIGRL+ L+TL  F  +      C++  L
Sbjct: 617 SLQKLPHAMGKLINLRHLENY-TRSLKGLPKGIGRLSSLQTLDVFIVSSHGNDECQIGDL 675

Query: 267 KNLEHLQ 273
           +NL +L+
Sbjct: 676 RNLNNLR 682

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482788|ref|XP_003632840.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/304 (40%), Positives = 179/304 (58%), Gaps = 43/304 (14%)

Query: 3   SLLLSYNDLPSKLKRC--------------------------YLSAEEDEEMETIGEEYF 36
           +LLLSY DLP  ++RC                          YL ++  +EME IG  YF
Sbjct: 390 ALLLSYYDLPPAIQRCFSFCAVFPKASVIERDELIKLWMAQSYLKSDGSKEMEMIGRTYF 449

Query: 37  GILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDE 96
             LA RSFFQ+FEK  D  II+CKMHD+VHDFAQF+++NEC  +E++  +   +  S  +
Sbjct: 450 EYLAARSFFQDFEKDTDGNIIRCKMHDIVHDFAQFLTQNECFIVEVDNQQMESIDLSF-K 508

Query: 97  KVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDF 156
           K+RH+ L++ E     VST  +K + +LL    +    S     L  L R LT LRALD 
Sbjct: 509 KIRHITLVVRESTPNFVSTYNMKNLHTLL---AKEAFKSSVLVALPNLLRHLTCLRALDL 565

Query: 157 CESYHSRSSLTPEIPRNIEKLVHLRYLSLS-FQHIEKLPETLCELYNLETLDISGCFDLE 215
                S + L  E+P+ + KL+HLR+L+LS    + +LPET+C+LYNL+TL+I GC  L 
Sbjct: 566 -----SSNQLIEELPKEVGKLIHLRFLNLSGCFWLRELPETICDLYNLQTLNIQGCSSLR 620

Query: 216 ELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKAC------RLESLKNL 269
           +LP+ +GKL+N++HL NS  ++ + +P GIGRL+ L+TL  F  +       ++  L+NL
Sbjct: 621 KLPQAMGKLINLRHLENSFLNN-KGLPKGIGRLSSLQTLNVFIVSSHGNDEGQIGDLRNL 679

Query: 270 EHLQ 273
            +L+
Sbjct: 680 NNLR 683

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482790|ref|XP_002268671.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 120/307 (39%), Positives = 178/307 (57%), Gaps = 52/307 (16%)

Query: 3   SLLLSYNDLPSKLKRC--------------------------YLSAEEDEEMETIGEEYF 36
           +LLLSY DLP  ++RC                          YL ++  +EME +G  YF
Sbjct: 413 ALLLSYYDLPPAIQRCFSFCAVFPKDSVIERDELIKLWMAQSYLKSDGSKEMEMVGRTYF 472

Query: 37  GILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLD- 95
             LA RSFFQ+FEK  D  II CKMHD+VHDFAQF++ NEC  +E++  ++     S+D 
Sbjct: 473 EYLAARSFFQDFEKDDDGNIIHCKMHDIVHDFAQFLTLNECFIVEVDNQKK----GSMDL 528

Query: 96  --EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRA 153
             +K+RH  L++ E      ST  +K + +LL         + +  +LE L   LT LRA
Sbjct: 529 FFQKIRHATLVVRESTPNFASTCNMKNLHTLLA------KRAFDSRVLEAL-GHLTCLRA 581

Query: 154 LDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSF-QHIEKLPETLCELYNLETLDISGCF 212
           LD        + L  E+P+ + KL+HLRYL+LS+   + +LPET+C+LYNL+TL+I  C 
Sbjct: 582 LDL-----RSNQLIEELPKEVGKLIHLRYLNLSYCDSLRELPETICDLYNLQTLNIQACS 636

Query: 213 DLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKA------CRLESL 266
            L++LP+ +GKL+N++HL N     ++ +P GIGRL+ L+TL  F  +      C++E L
Sbjct: 637 RLQKLPQAMGKLINLRHLENYDADDLQGLPKGIGRLSSLQTLDVFIVSSHGNDECQIEDL 696

Query: 267 KNLEHLQ 273
           +NL +L+
Sbjct: 697 RNLNNLR 703

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.659	0.178	0.333	5.1e-18
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.775	0.155	0.314	1.2e-16
TAIR|locus:2078012	852	ZAR1 "HOPZ-ACTIVATED RESISTANC	0.666	0.223	0.296	9.9e-14
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.778	0.262	0.262	1.6e-08
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.638	0.100	0.261	1.9e-08
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.554	0.170	0.302	4.4e-08
ZFIN|ZDB-GENE-030131-6062	601	lrrc40 "leucine rich repeat co	0.414	0.196	0.333	5.7e-07
ZFIN|ZDB-GENE-080917-20	994	mfhas1 "malignant fibrous hist	0.410	0.117	0.356	1.9e-06
ZFIN|ZDB-GENE-050417-279	343	lrrc39 "leucine rich repeat co	0.431	0.358	0.320	4.1e-06
TAIR|locus:2102857	847	AT3G46710 [Arabidopsis thalian	0.589	0.198	0.308	5.8e-06

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
 Identities = 71/213 (33%), Positives = 110/213 (51%)

Query:    35 YFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSL 94
             YF  L  RS  Q+ +  Y        MHD +++ AQF S       E +G + L V+   
Sbjct:   473 YFSELESRSLLQKTKTRYI-------MHDFINELAQFASGEFSSKFE-DGCK-LQVS--- 520

Query:    95 DEKVRHLMLI---IGEGAIFPVSTRRIKRMRSLL-IDGGRSDHSS-LNGEILEELFRELT 149
              E+ R+L  +     E   F  + R +K +R+ L +    S  S  L+  + E+L   LT
Sbjct:   521 -ERTRYLSYLRDNYAEPMEFE-ALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLT 578

Query:   150 SLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDIS 209
              LR L    S++  + L P+  +NI    H R+L LS   +EKLP++LC +YNL+TL +S
Sbjct:   579 RLRVLSL--SHYKIARLPPDFFKNIS---HARFLDLSRTELEKLPKSLCYMYNLQTLLLS 633

Query:   210 GCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMP 242
              C  L+ELP  I  L+N+++L +   + +R MP
Sbjct:   634 YCSSLKELPTDISNLINLRYL-DLIGTKLRQMP 665

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 78/248 (31%), Positives = 119/248 (47%)

Query:    35 YFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSL 94
             Y G L  +SFFQ  + +  + +    MHD+++D A+ VS + C  LE +   E+  T   
Sbjct:   465 YLGDLVAQSFFQRLDITMTSFV----MHDLMNDLAKAVSGDFCFRLEDDNIPEIPSTT-- 518

Query:    95 DEKVRHLMLIIGEGAIFPVSTRRI---KRMRSLL-IDGGRSDHS-SLNGEILEELFRELT 149
                 RH      +     V+ R I   + +R++L  +   S  S  L  ++L  L   L+
Sbjct:   519 ----RHFSFSRSQ-CDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALS 573

Query:   150 SLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDIS 209
              LR L       S   +T  +P++++ L  LRYL LS   I++LPE +C L NL+TL +S
Sbjct:   574 GLRILSL-----SHYQIT-NLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLS 627

Query:   210 GCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIXXXXXXXXXXEFT----KACRLES 265
              C DL  LPK I +L+N++ LL+   + +  MP GI           F         L  
Sbjct:   628 NCRDLTSLPKSIAELINLR-LLDLVGTPLVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHE 686

Query:   266 LKNLEHLQ 273
             LK L HL+
Sbjct:   687 LKELSHLR 694

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
 Identities = 62/209 (29%), Positives = 98/209 (46%)

Query:    36 FGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSL-EINGSEELDVTNSL 94
             F  L  R   +  +K+Y   II CK+HDMV D    +++ +  S  E      L ++ + 
Sbjct:   462 FSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLVIDIAKKDSFSNPEGLNCRHLGISGNF 521

Query:    95 DEK---VRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRS-------DHS-SLNGEILEE 143
             DEK   V H +     G +    T  + ++ S L             D S S+    L E
Sbjct:   522 DEKQIKVNHKL----RGVVSTTKTGEVNKLNSDLAKKFTDCKYLRVLDISKSIFDAPLSE 577

Query:   144 LFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSF-QHIEKLPETLCELYN 202
             +  E+ SL+ L  C S  +   L  + PR++E L +L+ L  S+ Q++++L   +     
Sbjct:   578 ILDEIASLQHLA-CLSLSNTHPLI-QFPRSMEDLHNLQILDASYCQNLKQLQPCIVLFKK 635

Query:   203 LETLDISGCFDLEELPKGIGKLVNMKHLL 231
             L  LD++ C  LE  PKGIG LV ++ LL
Sbjct:   636 LLVLDMTNCGSLECFPKGIGSLVKLEVLL 664

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 64/244 (26%), Positives = 115/244 (47%)

Query:    35 YFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSL 94
             Y   L  RS  +  E+    +++ C++HD++ D A  + + + L+  +N   E   ++ +
Sbjct:   463 YIDELVDRSLVKA-ERIERGKVMSCRIHDLLRDLA--IKKAKELNF-VNVYNEKQHSSDI 518

Query:    95 --DEKVRHLMLIIGEGAIFPVSTRRI-KRMRSLLIDGGRSDHSSLNGEILE-ELFRELTS 150
                E V HLM    +   + +  RR+ KRMRS L  G R     +N   L+ +L R L +
Sbjct:   519 CRREVVHHLM---ND---YYLCDRRVNKRMRSFLFIGERRGFGYVNTTNLKLKLLRVL-N 571

Query:   151 LRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISG 210
             +  L F     + S+  P++   I +L+HLRYL ++  ++  LP ++  L  L+TLD SG
Sbjct:   572 MEGLLFVSK--NISNTLPDV---IGELIHLRYLGIADTYVSILPASISNLRFLQTLDASG 626

Query:   211 CFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIXXXXXXXXXXEFTKACRLESLKNLE 270
               D  +    + KL +++H++         +  G+                  E L+NL+
Sbjct:   627 N-DPFQYTTDLSKLTSLRHVIGKFVGEC-LIGEGVNLQTLRSISSYSWSKLNHELLRNLQ 684

Query:   271 HLQI 274
              L+I
Sbjct:   685 DLEI 688

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 159 (61.0 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
 Identities = 56/214 (26%), Positives = 98/214 (45%)

Query:    35 YFGILAPRSFFQEFEKS-YDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNS 93
             Y   L    F Q+ E + + +      MHD++HD AQ VS+ E  +  I+GSE  ++  S
Sbjct:   602 YLAELVNSGFLQQVESTRFSSEYFV--MHDLMHDLAQKVSQTEYAT--IDGSECTELAPS 657

Query:    94 LDEKVRHLMLI------------IGEGAIFPVSTRRIK---RMRSLLIDGGRSDHSSLNG 138
                 +RHL ++            I    +F     ++K   ++RSL++ G    H     
Sbjct:   658 ----IRHLSIVTDSAYRKEKYRNISRNEVFEKRLMKVKSRSKLRSLVLIGQYDSHFF--- 710

Query:   139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK-LPETL 197
             +  ++ F+E   LR L    +Y    S    +  +     HLRYL +  +   + LP +L
Sbjct:   711 KYFKDAFKEAQHLRLLQITATYADSDSFLSSLVNS----THLRYLKIVTEESGRTLPRSL 766

Query:   198 CELYNLETLDISGCFDLEELPKGIGKLVNMKHLL 231
              + Y+L+ LDI   F +  +   I  L++++HL+
Sbjct:   767 RKYYHLQVLDIGYRFGIPRISNDINNLLSLRHLV 800

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
 Identities = 53/175 (30%), Positives = 83/175 (47%)

Query:    60 KMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDEKVRHLMLIIGEGAIFPVSTRRIK 119
             KMHD++ + A  VS+ E      N   + D      E      L I +  + P S R   
Sbjct:   502 KMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGSRHLCI-QKEMTPDSIRATN 560

Query:   120 RMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVH 179
              + SLL+    + H         EL   L  LRALD  +S  S+      +P  +  + +
Sbjct:   561 -LHSLLVCSS-AKHKM-------ELLPSLNLLRALDLEDSSISK------LPDCLVTMFN 605

Query:   180 LRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSR 234
             L+YL+LS   +++LP+   +L NLETL+      +EELP G+ KL  +++L+  R
Sbjct:   606 LKYLNLSKTQVKELPKNFHKLVNLETLNTKHS-KIEELPLGMWKLKKLRYLITFR 659

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

ZFIN|ZDB-GENE-030131-6062 lrrc40 "leucine rich repeat containing 40" [Danio rerio (taxid:7955)]

 Score = 142 (55.0 bits), Expect = 5.7e-07, P = 5.7e-07
 Identities = 44/132 (33%), Positives = 72/132 (54%)

Query:   112 PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP 171
             P S   +++++ L++      H+ L  E+   ++R LT+LR L      H + +L  +IP
Sbjct:   119 PDSIGDLEQLQKLILS-----HNKLT-ELPSGVWR-LTNLRCL------HLQQNLIEQIP 165

Query:   172 RNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLL 231
             R++ +LV+L  L LS  H+  +PE+L  L NL  LD+S C  L+ LP  I ++ N++ L 
Sbjct:   166 RDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLS-CNKLKSLPPAISQMKNLRMLD 224

Query:   232 NSRTSSVRYMPV 243
              SR       PV
Sbjct:   225 CSRNQMESIPPV 236

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-080917-20 mfhas1 "malignant fibrous histiocytoma amplified sequence 1" [Danio rerio (taxid:7955)]

 Score = 140 (54.3 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 47/132 (35%), Positives = 69/132 (52%)

Query:   111 FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI 170
             FP S  +++++R+L +D     H+ L      E+   L+ L  LD C    S + L   +
Sbjct:   157 FPRSFSQLRKLRTLDVD-----HNKLQ-RFPSEILA-LSDLEELD-C----SGNKLEG-L 203

Query:   171 PRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHL 230
             P NI  L  ++ L LS  H+  LPET CEL NLE+L +   F L  LP+  GKL  +K +
Sbjct:   204 PGNIMMLQSIKILWLSSTHLLSLPETFCELQNLESLMLDNNF-LTRLPQSFGKLQKLK-M 261

Query:   231 LNSRTSSVRYMP 242
             LN  ++S    P
Sbjct:   262 LNLSSNSFEDFP 273

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-050417-279 lrrc39 "leucine rich repeat containing 39" [Danio rerio (taxid:7955)]

 Score = 131 (51.2 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 42/131 (32%), Positives = 68/131 (51%)

Query:   103 LIIGEG-AIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYH 161
             ++  EG  I  +     K +   L+   +     L+   L+ + R ++S ++L   +   
Sbjct:    61 IVTEEGRVILRIEKEEWKTLPPALVQLSQIQEWQLHRIGLQRIPRFISSFQSLIVLDL-- 118

Query:   162 SRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETL--CELYNLETLDISGCFDLEELPK 219
             SR+S+T EIP+ I KL  LR L LS+  +  +PE L  CE  NLE L+++   DL+ELP 
Sbjct:   119 SRNSVT-EIPKEIGKLTRLRELLLSYNRVSYVPEELGCCE--NLEKLELAMNQDLDELPT 175

Query:   220 GIGKLVNMKHL 230
              +  L  + HL
Sbjct:   176 QLSNLKKLSHL 186

GO:0005575 "cellular_component" evidence=ND

GO:0045214 "sarcomere organization" evidence=IMP

GO:0060047 "heart contraction" evidence=IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

TAIR|locus:2102857 AT3G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 58/188 (30%), Positives = 95/188 (50%)

Query:    47 EFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDEKVRHLMLIIG 106
             E  K    +++  ++HD+V +F   + +++ L+      E+   T S  E V HLM    
Sbjct:   467 EVVKRKKGKLMSFRIHDLVREFT--IKKSKELNFVNVYDEQHSSTTSRREVVHHLM---D 521

Query:   107 EGAIFPVSTRRIK-RMRSLLIDGGR-SDHSSLNGEILE-ELFRELTSLRALDF-CESYHS 162
             +  +     RR+  +MRS L  G R +D + +    L+ +L R L +L  L F C+ Y S
Sbjct:   522 DNYL---CDRRVNTQMRSFLFFGKRRNDITYVETITLKLKLLRVL-NLGGLHFICQGY-S 576

Query:   163 RSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIG 222
               SL P++   I  LVHLRYL ++   +  LP+ +  L  L+TLD SG    E +   + 
Sbjct:   577 PWSL-PDV---IGGLVHLRYLGIADTVVNNLPDFISNLRFLQTLDASGN-SFERMTD-LS 630

Query:   223 KLVNMKHL 230
              L +++HL
Sbjct:   631 NLTSLRHL 638

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003244001 SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (897 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLV-HLRYLSLSFQHIEKLPETL 197
             L  L   ++ L  L    S    ++   +IP  I  L  +L+ L LS   IE LP  L
Sbjct: 100 LNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL 159

Query: 198 CELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLG 255
             L NL+ LD+S   DL +LPK +  L N+ +L  S  + +  +P  I  L+ L  L 
Sbjct: 160 RNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELD 215

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 19/145 (13%)

Query: 116 RRIKRMRSL-LIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI 174
           R + +M+SL  I  G   +++L+GEI  E+   LTSL  LD        ++LT  IP ++
Sbjct: 206 RELGQMKSLKWIYLG---YNNLSGEIPYEI-GGLTSLNHLDLV-----YNNLTGPIPSSL 256

Query: 175 EKLVHLRYLSLSFQH--IEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMK--HL 230
             L +L+YL L +Q+     +P ++  L  L +LD+S      E+P+ + +L N++  HL
Sbjct: 257 GNLKNLQYLFL-YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Query: 231 L-NSRTSSVRYMPVGIGRLTGLRTL 254
             N+ T  +   PV +  L  L+ L
Sbjct: 316 FSNNFTGKI---PVALTSLPRLQVL 337

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 169 EIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMK 228
            +P  +  L +L+ L LSF  +  LP+ L  L NL  LD+SG   + +LP  I  L  ++
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALE 212

Query: 229 HLLNSRTSSVRYMPVGIGRLTGLRTLG 255
            L  S  S +  +   +  L  L  L 
Sbjct: 213 ELDLSNNSIIE-LLSSLSNLKNLSGLE 238

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.74
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.59
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.57
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.57
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.56
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.5
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.34
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.27
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.23
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.15
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.15
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.13
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.12
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.1
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
PLN03150	623	hypothetical protein; Provisional	99.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.0
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.98
PLN03150	623	hypothetical protein; Provisional	98.91
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.84
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.83
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.8
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.7
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.7
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.56
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.43
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.32
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.31
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.3
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.16
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.14
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.11
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.1
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.06
PRK15386	426	type III secretion protein GogB; Provisional	97.89
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.88
PRK15386	426	type III secretion protein GogB; Provisional	97.87
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.86
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.82
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.43
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.42
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.35
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.31
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.01
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.72
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.28
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.1
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.96
KOG4341	483	consensus F-box protein containing LRR [General fu	95.86
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.84
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.44
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.07
KOG4341	483	consensus F-box protein containing LRR [General fu	94.68
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.52
smart00370	26	LRR Leucine-rich repeats, outliers.	93.71
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.71
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.39
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.94
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.5
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	88.3
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.05
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.21

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.95  E-value=6.4e-28  Score=227.76  Aligned_cols=270  Identities=29%  Similarity=0.393  Sum_probs=205.7

Q ss_pred             CCceeccccCCchhhhccc--------------------------ccc-CCCCCHHHHHHHHHHHHhhCCCCccccccCC
Q 043587            1 MSSLLLSYNDLPSKLKRCY--------------------------LSA-EEDEEMETIGEEYFGILAPRSFFQEFEKSYD   53 (285)
Q Consensus         1 ~~~L~lSy~~L~~~lk~cf--------------------------~~~-~~~~~~~~~~~~~~~~Li~~~li~~~~~~~~   53 (285)
                      ++||++||+.||.++|.||                          +.+ .+++++++.|.+|+.+|+++++++..+..  
T Consensus       398 ~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--  475 (889)
T KOG4658|consen  398 LPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--  475 (889)
T ss_pred             HHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--
Confidence            4799999999999999999                          333 23678899999999999999999987765  


Q ss_pred             CceeeEecChHHHHHHHHhhc-----cceeEeeeC-CcccccccCCCCCceeEEEEEecCCcccccchhccccccEEeec
Q 043587           54 NRIIKCKMHDMVHDFAQFVSE-----NECLSLEIN-GSEELDVTNSLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLID  127 (285)
Q Consensus        54 ~~~~~~~~hd~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~  127 (285)
                      ++..+|+|||+++++|.+++.     .+......+ +.....-. ..+..+|++++..+.....+... ..++|++|.+.
T Consensus       476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~-~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~  553 (889)
T KOG4658|consen  476 GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQV-KSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQ  553 (889)
T ss_pred             cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccc-cchhheeEEEEeccchhhccCCC-CCCccceEEEe
Confidence            667799999999999999998     555444433 22211111 45678999999999887655543 44589999999


Q ss_pred             CCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEe
Q 043587          128 GGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLD  207 (285)
Q Consensus       128 ~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~  207 (285)
                      .+..    ....+....|..++.|++|||+     +|.-.+.+|..|+.+.+||||+++++.++.+|.++++|..|.+|+
T Consensus       554 ~n~~----~l~~is~~ff~~m~~LrVLDLs-----~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  554 RNSD----WLLEISGEFFRSLPLLRVLDLS-----GNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ecch----hhhhcCHHHHhhCcceEEEECC-----CCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence            9852    1455567778999999999999     888678899999999999999999999999999999999999999


Q ss_pred             cCCCCCcCcCcccccccCCCceeecCCCCCCc--ccCCCCCCCCcCCcccccc---------------------------
Q 043587          208 ISGCFDLEELPKGIGKLVNMKHLLNSRTSSVR--YMPVGIGRLTGLRTLGEFT---------------------------  258 (285)
Q Consensus       208 l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~---------------------------  258 (285)
                      +..+......|..+..|.+|++|.+.......  ..-..+..+.+|+.+....                           
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~  704 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC  704 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc
Confidence            99988677776666679999999997653111  1112234444444443332                           


Q ss_pred             -ccCCccccccCCcCCCceecccCCC
Q 043587          259 -KACRLESLKNLEHLQICGIRRLGYV  283 (285)
Q Consensus       259 -~~~~~~~l~~l~~L~~L~i~~~~~~  283 (285)
                       ....+..+..+.+|+.|.|.+|...
T Consensus       705 ~~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  705 SKRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             ccceeecccccccCcceEEEEcCCCc
Confidence             1234455677778888888877653

>PLN03210 Resistant to P

Probab=99.86  E-value=1e-21  Score=193.78  Aligned_cols=264  Identities=21%  Similarity=0.242  Sum_probs=155.5

Q ss_pred             CceeccccCCch-hhhccccc--cC-CCCCHHHH----H------HHHHHHHhhCCCCccccccCCCceeeEecChHHHH
Q 043587            2 SSLLLSYNDLPS-KLKRCYLS--AE-EDEEMETI----G------EEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHD   67 (285)
Q Consensus         2 ~~L~lSy~~L~~-~lk~cf~~--~~-~~~~~~~~----~------~~~~~~Li~~~li~~~~~~~~~~~~~~~~hd~~~~   67 (285)
                      ++|++||++|++ ..|.||..  +. .+.....+    +      +.-++.|+++++++...    +   .+.|||++++
T Consensus       424 ~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~----~---~~~MHdLl~~  496 (1153)
T PLN03210        424 KTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRE----D---IVEMHSLLQE  496 (1153)
T ss_pred             HHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcC----C---eEEhhhHHHH
Confidence            589999999987 59999922  11 12222111    1      12277899999998643    1   5799999999


Q ss_pred             HHHHhhccce-------eEeeeCCcccccccCCCCCceeEEEEEecCCcc---cccchhccccccEEeecCCCCCC-CCc
Q 043587           68 FAQFVSENEC-------LSLEINGSEELDVTNSLDEKVRHLMLIIGEGAI---FPVSTRRIKRMRSLLIDGGRSDH-SSL  136 (285)
Q Consensus        68 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~-~~l  136 (285)
                      +|+.+++++.       +.+.................++.+++.......   ...+|.++++|+.|.+..+..+. ...
T Consensus       497 ~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~  576 (1153)
T PLN03210        497 MGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEV  576 (1153)
T ss_pred             HHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccc
Confidence            9999987653       222221111111111344567777766554433   34567888889888886543110 001


Q ss_pred             hhhHHHHHHhcC-CccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcC
Q 043587          137 NGEILEELFREL-TSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLE  215 (285)
Q Consensus       137 ~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~  215 (285)
                      ... .|..|..+ .+|+.|++.     ++. ...+|..+ .+.+|+.|+++++.+..+|.++..+++|+.|++++|..++
T Consensus       577 ~~~-lp~~~~~lp~~Lr~L~~~-----~~~-l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~  648 (1153)
T PLN03210        577 RWH-LPEGFDYLPPKLRLLRWD-----KYP-LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK  648 (1153)
T ss_pred             eee-cCcchhhcCcccEEEEec-----CCC-CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC
Confidence            111 12334444 347777776     655 55566555 3566666777666666666666666666666666665555


Q ss_pred             cCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccCC
Q 043587          216 ELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLGY  282 (285)
Q Consensus       216 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~~  282 (285)
                      .+| .++.+++|++|++++|.....+|..++++++|+.|++.+   ....+... ++++|+.|++++|..
T Consensus       649 ~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        649 EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR  716 (1153)
T ss_pred             cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence            665 366666666666666666666666666666666666665   12222222 455666666666543

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.74  E-value=9.3e-18  Score=164.49  Aligned_cols=129  Identities=26%  Similarity=0.371  Sum_probs=100.6

Q ss_pred             CCccceeeecccccccccCCCcccccccccCCCceEeccccccc-ccchhhhcCCCccEEecCCCCCcCcCcccccccCC
Q 043587          148 LTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE-KLPETLCELYNLETLDISGCFDLEELPKGIGKLVN  226 (285)
Q Consensus       148 ~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~  226 (285)
                      +++|++|+++     +|.+.+.+|..++.+.+|++|++++|.+. .+|..++++++|++|++++|...+.+|..++++++
T Consensus       139 l~~L~~L~Ls-----~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  213 (968)
T PLN00113        139 IPNLETLDLS-----NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS  213 (968)
T ss_pred             cCCCCEEECc-----CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC
Confidence            4455555555     66655667777888888888888888854 67778888888888888888866778888888888


Q ss_pred             CceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587          227 MKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       227 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      |++|++++|.+.+.+|..++.+++|++|++++   ....+..++++++|+.|+++++.
T Consensus       214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  271 (968)
T PLN00113        214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK  271 (968)
T ss_pred             ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence            88888888888878888888888888888877   45677778888888888887653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.73  E-value=6.7e-18  Score=165.52  Aligned_cols=150  Identities=22%  Similarity=0.321  Sum_probs=64.6

Q ss_pred             ceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc
Q 043587           97 KVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE  175 (285)
Q Consensus        97 ~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~  175 (285)
                      +++.|.+..+.... .+..+..+++|++|++.+|.     +.+. .|..+.++++|++|+++     +|.+.+.+|..++
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-----l~~~-~p~~~~~l~~L~~L~L~-----~n~l~~~~p~~l~  209 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV-----LVGK-IPNSLTNLTSLEFLTLA-----SNQLVGQIPRELG  209 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCc-----cccc-CChhhhhCcCCCeeecc-----CCCCcCcCChHHc
Confidence            34444444443332 33444455555555555544     1222 23334445555555554     4443344444444


Q ss_pred             ccCCCceEeccccccc-ccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          176 KLVHLRYLSLSFQHIE-KLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       176 ~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                      ++.+|++|++++|.+. .+|..++++++|++|++++|...+.+|..++++++|++|++++|.+.+.+|..+..+++|++|
T Consensus       210 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  289 (968)
T PLN00113        210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL  289 (968)
T ss_pred             CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence            4444444444444433 334444444444444444444333344444444444444444444433344444444444444


Q ss_pred             ccc
Q 043587          255 GEF  257 (285)
Q Consensus       255 ~l~  257 (285)
                      +++
T Consensus       290 ~Ls  292 (968)
T PLN00113        290 DLS  292 (968)
T ss_pred             ECc
Confidence            443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=3.2e-18  Score=128.50  Aligned_cols=160  Identities=24%  Similarity=0.334  Sum_probs=116.9

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ..++.++.++.+.+..+++.++++.+|+.|++.+|+      ..+. |..++.++.|+.|+++     -|. ...+|..|
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq------ie~l-p~~issl~klr~lnvg-----mnr-l~~lprgf   98 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ------IEEL-PTSISSLPKLRILNVG-----MNR-LNILPRGF   98 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch------hhhc-Chhhhhchhhhheecc-----hhh-hhcCcccc
Confidence            456777777777777777888888888888888887      5554 4447778888888887     666 66677788


Q ss_pred             cccCCCceEeccccccc--ccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587          175 EKLVHLRYLSLSFQHIE--KLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR  252 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~  252 (285)
                      +.++-|+.||+.+|.+.  .+|..+..++.|+.|.++.|. .+.+|..++++++|+.|.+.+|.+. .+|..++.+..|+
T Consensus        99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr  176 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR  176 (264)
T ss_pred             CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence            88888888888877755  567777777777777777776 6777777888888888887777666 6777778787787


Q ss_pred             cccccc--ccCCccccccC
Q 043587          253 TLGEFT--KACRLESLKNL  269 (285)
Q Consensus       253 ~L~l~~--~~~~~~~l~~l  269 (285)
                      +|.+.+  -...+.+++.+
T Consensus       177 elhiqgnrl~vlppel~~l  195 (264)
T KOG0617|consen  177 ELHIQGNRLTVLPPELANL  195 (264)
T ss_pred             HHhcccceeeecChhhhhh
Confidence            777776  23344444433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=1.1e-17  Score=125.59  Aligned_cols=155  Identities=19%  Similarity=0.270  Sum_probs=136.9

Q ss_pred             cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccc
Q 043587          113 VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK  192 (285)
Q Consensus       113 ~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~  192 (285)
                      ..+.++++++.|.+++|.      ...++|. +..+.+|++|++.     .|+ ++++|.+++.++.|+.|+++-|++..
T Consensus        27 ~gLf~~s~ITrLtLSHNK------l~~vppn-ia~l~nlevln~~-----nnq-ie~lp~~issl~klr~lnvgmnrl~~   93 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNK------LTVVPPN-IAELKNLEVLNLS-----NNQ-IEELPTSISSLPKLRILNVGMNRLNI   93 (264)
T ss_pred             ccccchhhhhhhhcccCc------eeecCCc-HHHhhhhhhhhcc-----cch-hhhcChhhhhchhhhheecchhhhhc
Confidence            455678889999999998      5565555 8999999999998     888 89999999999999999999999999


Q ss_pred             cchhhhcCCCccEEecCCCCC-cCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccC
Q 043587          193 LPETLCELYNLETLDISGCFD-LEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNL  269 (285)
Q Consensus       193 lp~~i~~l~~L~~L~l~~~~~-~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l  269 (285)
                      +|.++|.++-|++||+..|+. ...+|..|..+..|+.|.+++|.+- .+|..++++.+|+.|.+..  -...+.+++.|
T Consensus        94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~l  172 (264)
T KOG0617|consen   94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDL  172 (264)
T ss_pred             CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHH
Confidence            999999999999999999873 3458989999999999999999664 8999999999999999887  56788999999


Q ss_pred             CcCCCceecccC
Q 043587          270 EHLQICGIRRLG  281 (285)
Q Consensus       270 ~~L~~L~i~~~~  281 (285)
                      ++|++|.|.+..
T Consensus       173 t~lrelhiqgnr  184 (264)
T KOG0617|consen  173 TRLRELHIQGNR  184 (264)
T ss_pred             HHHHHHhcccce
Confidence            999999987753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.59  E-value=9.4e-17  Score=142.07  Aligned_cols=258  Identities=19%  Similarity=0.224  Sum_probs=175.0

Q ss_pred             CceeccccCCch------hhhccccccCCCCCHHHHHHHHHHHHhhCCCCccccccCCCceeeEecChHHHHHHHHhhcc
Q 043587            2 SSLLLSYNDLPS------KLKRCYLSAEEDEEMETIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSEN   75 (285)
Q Consensus         2 ~~L~lSy~~L~~------~lk~cf~~~~~~~~~~~~~~~~~~~Li~~~li~~~~~~~~~~~~~~~~hd~~~~~~~~~~~~   75 (285)
                      .+|.||.|.|..      ..|.-.+-......++.+-...|-.|++.=|+..+...-.      .++..++.+.......
T Consensus       106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe------~LPPQ~RRL~~LqtL~  179 (1255)
T KOG0444|consen  106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE------MLPPQIRRLSMLQTLK  179 (1255)
T ss_pred             eeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh------hcCHHHHHHhhhhhhh
Confidence            467777776642      2233333333344555566666777777777766554321      3444555444322211


Q ss_pred             cee-EeeeCCcccccccCCCCCceeEEEEEecC--CcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccc
Q 043587           76 ECL-SLEINGSEELDVTNSLDEKVRHLMLIIGE--GAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLR  152 (285)
Q Consensus        76 ~~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~  152 (285)
                      -+. ....-.....    .....+..|.+++.+  ...+|.++.++.+|+.++++.|.      ... .|+.+-.+++|+
T Consensus       180 Ls~NPL~hfQLrQL----PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~------Lp~-vPecly~l~~Lr  248 (1255)
T KOG0444|consen  180 LSNNPLNHFQLRQL----PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN------LPI-VPECLYKLRNLR  248 (1255)
T ss_pred             cCCChhhHHHHhcC----ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC------CCc-chHHHhhhhhhh
Confidence            000 0000000000    123344444444433  22388888999999999999987      434 477788899999


Q ss_pred             eeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCc-CcCcccccccCCCceee
Q 043587          153 ALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDL-EELPKGIGKLVNMKHLL  231 (285)
Q Consensus       153 ~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~-~~lp~~l~~l~~L~~L~  231 (285)
                      .|+|+     +|. ++++...++.+.+|++|+++.|+++.+|..+.+|++|+.|.+.+|+.. .-+|++||+|..|+.+.
T Consensus       249 rLNLS-----~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~  322 (1255)
T KOG0444|consen  249 RLNLS-----GNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH  322 (1255)
T ss_pred             eeccC-----cCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence            99999     888 677777788888999999999999999999999999999988888732 44788999999999998


Q ss_pred             cCCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceecccCCC
Q 043587          232 NSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRLGYV  283 (285)
Q Consensus       232 l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~~~  283 (285)
                      ..+|.+ ..+|.++.+|..|+.|.++.  -...|..+.-|+.|++||+...+++
T Consensus       323 aanN~L-ElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  323 AANNKL-ELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hhcccc-ccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence            888744 58889999999999998887  5567777888888888888887764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.57  E-value=7.6e-17  Score=142.64  Aligned_cols=172  Identities=24%  Similarity=0.307  Sum_probs=96.9

Q ss_pred             ceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccc
Q 043587           97 KVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEK  176 (285)
Q Consensus        97 ~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~  176 (285)
                      ++.+|++..++...+...+..++.||++.+..|..     ...-.|..+-.+..|.+|||+     +|+ ..+.|..+..
T Consensus        56 kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~L-----KnsGiP~diF~l~dLt~lDLS-----hNq-L~EvP~~LE~  124 (1255)
T KOG0444|consen   56 KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNL-----KNSGIPTDIFRLKDLTILDLS-----HNQ-LREVPTNLEY  124 (1255)
T ss_pred             hhhhhhhhhhhhHhhhhhhccchhhHHHhhhcccc-----ccCCCCchhcccccceeeecc-----hhh-hhhcchhhhh
Confidence            45555555555555555555556666666555542     111122234456666666666     555 5555555555


Q ss_pred             cCCCceEecccccccccchhhh-cCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCc----------------
Q 043587          177 LVHLRYLSLSFQHIEKLPETLC-ELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVR----------------  239 (285)
Q Consensus       177 l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~----------------  239 (285)
                      -+++-+|+|++|+|..+|..+. +|+-|-.|+|++|+ +..+|+.+..|..|+.|++++|++..                
T Consensus       125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh  203 (1255)
T KOG0444|consen  125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH  203 (1255)
T ss_pred             hcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence            5666666666666666665433 55666666666665 56666666666666666666554432                


Q ss_pred             ---------ccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceeccc
Q 043587          240 ---------YMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       240 ---------~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                               .+|.++..+.+|+.++++.  -+..|..+.++++|+.|++++.
T Consensus       204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN  255 (1255)
T ss_pred             cccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC
Confidence                     3455555566666666655  3445555666666666666654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.57  E-value=1.1e-16  Score=140.47  Aligned_cols=175  Identities=17%  Similarity=0.098  Sum_probs=130.4

Q ss_pred             CCCCceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ....++.++.+..+.... -..++.+++.|+.|++++|.      +..+.++.++..+.|++|+|+     .|++...-+
T Consensus       266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na------I~rih~d~WsftqkL~~LdLs-----~N~i~~l~~  334 (873)
T KOG4194|consen  266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA------IQRIHIDSWSFTQKLKELDLS-----SNRITRLDE  334 (873)
T ss_pred             eeecccceeecccchhhhhhcccccccchhhhhccchhh------hheeecchhhhcccceeEecc-----ccccccCCh
Confidence            356778888888887766 44577888888888888887      666667778888888888888     888444445


Q ss_pred             ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcC---cccccccCCCceeecCCCCCCcccCCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEEL---PKGIGKLVNMKHLLNSRTSSVRYMPVGIGR  247 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~l---p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~  247 (285)
                      .++..+..|+.|+|+.|++..+.+ .+..+.+|++|||+.|.....+   ...+..|++|+.|++.+|++...--.+|..
T Consensus       335 ~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg  414 (873)
T KOG4194|consen  335 GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG  414 (873)
T ss_pred             hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhcc
Confidence            677788888888888888887765 4567888999999988754332   335667899999999998776333367888


Q ss_pred             CCcCCcccccc---ccCCccccccCCcCCCceecc
Q 043587          248 LTGLRTLGEFT---KACRLESLKNLEHLQICGIRR  279 (285)
Q Consensus       248 l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~  279 (285)
                      +++|+.|++.+   ..-.+..+..+ +|++|-++.
T Consensus       415 l~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  415 LEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             CcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            99999999887   44455666666 677765543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.56  E-value=2.1e-15  Score=132.49  Aligned_cols=180  Identities=17%  Similarity=0.115  Sum_probs=119.5

Q ss_pred             CceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeeccccc-------------
Q 043587           96 EKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYH-------------  161 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~-------------  161 (285)
                      .++++|.+..+.+.. -...|.++.+|.+|.++.|+      ...+++..|.+++.|+.|+|.-|++             
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr------ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S  246 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR------ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS  246 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCc------ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchh
Confidence            466777777776655 34466666666666666666      4444555566666666666652210             


Q ss_pred             ------ccccCCCcccccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCC
Q 043587          162 ------SRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSR  234 (285)
Q Consensus       162 ------~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~  234 (285)
                            .+|.+...-...|..+.+++.|+|..|++..+-+ ++.+|++|+.|+++.|.+.+.-+.++...++|+.|++++
T Consensus       247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~  326 (873)
T KOG4194|consen  247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS  326 (873)
T ss_pred             hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc
Confidence                  1444222223456667777777777777776643 567888888888888885566677777888888888888


Q ss_pred             CCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587          235 TSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       235 ~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      |.+..--+..+..+..|++|.+++   .--....+..+++|++||+.+.+
T Consensus       327 N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  327 NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence            877765566788888888888887   22334457778888888877643

>PLN03210 Resistant to P

Probab=99.50  E-value=1.3e-13  Score=136.61  Aligned_cols=127  Identities=31%  Similarity=0.361  Sum_probs=76.4

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      +.++|.|.+..+....+|..+ ...+|+.|++.++.      ...+ +..+..+++|+.|+++     ++...+.+| .+
T Consensus       588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~------l~~L-~~~~~~l~~Lk~L~Ls-----~~~~l~~ip-~l  653 (1153)
T PLN03210        588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK------LEKL-WDGVHSLTGLRNIDLR-----GSKNLKEIP-DL  653 (1153)
T ss_pred             CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc------cccc-ccccccCCCCCEEECC-----CCCCcCcCC-cc
Confidence            456777777766666566554 45677777777665      3332 3334566667777776     544345555 35


Q ss_pred             cccCCCceEeccccc-ccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCC
Q 043587          175 EKLVHLRYLSLSFQH-IEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTS  236 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~  236 (285)
                      +.+++|++|++++|. +..+|..++++++|+.|++++|..++.+|..+ ++++|++|++++|.
T Consensus       654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence            566666666666654 55666666666666666666665566666544 45555555555554

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.34  E-value=2.1e-14  Score=121.09  Aligned_cols=159  Identities=21%  Similarity=0.205  Sum_probs=114.6

Q ss_pred             ecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEe
Q 043587          105 IGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLS  184 (285)
Q Consensus       105 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~  184 (285)
                      .+++...|..+..+.++..+++.+|.      ....++..+. |+.|+.||..     .|- .+.+|..++.+.+|.-|+
T Consensus       146 ~N~i~slp~~~~~~~~l~~l~~~~n~------l~~l~~~~i~-m~~L~~ld~~-----~N~-L~tlP~~lg~l~~L~~Ly  212 (565)
T KOG0472|consen  146 NNQISSLPEDMVNLSKLSKLDLEGNK------LKALPENHIA-MKRLKHLDCN-----SNL-LETLPPELGGLESLELLY  212 (565)
T ss_pred             ccccccCchHHHHHHHHHHhhccccc------hhhCCHHHHH-HHHHHhcccc-----hhh-hhcCChhhcchhhhHHHH
Confidence            34444455555556666666666655      4444444333 7777777776     555 777888888888888888


Q ss_pred             cccccccccchhhhcCCCccEEecCCCCCcCcCccccc-ccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccC
Q 043587          185 LSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIG-KLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KAC  261 (285)
Q Consensus       185 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~  261 (285)
                      +..|.+..+| +++++..|..+.++.|+ ++.+|+.++ .++++..||+.+|++. ..|.++.-+.+|+.|++++  ...
T Consensus       213 L~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  213 LRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS  289 (565)
T ss_pred             hhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence            8888888887 67777778888887776 777887765 7888888888888665 7888888888888888887  556


Q ss_pred             CccccccCCcCCCceeccc
Q 043587          262 RLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       262 ~~~~l~~l~~L~~L~i~~~  280 (285)
                      .+-++++| +|+.|-+.+.
T Consensus       290 Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  290 LPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             CCcccccc-eeeehhhcCC
Confidence            77778888 6887776654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.27  E-value=9.4e-14  Score=117.27  Aligned_cols=172  Identities=24%  Similarity=0.312  Sum_probs=101.9

Q ss_pred             CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ....+..+.++.+.....|++++.+..+..+++++|.      ...+ |..+..+.+++.|+.+     +|. ..++|+.
T Consensus        66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~------ls~l-p~~i~s~~~l~~l~~s-----~n~-~~el~~~  132 (565)
T KOG0472|consen   66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK------LSEL-PEQIGSLISLVKLDCS-----SNE-LKELPDS  132 (565)
T ss_pred             cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch------Hhhc-cHHHhhhhhhhhhhcc-----ccc-eeecCch
Confidence            3456777888888887788888888888888888887      5554 4446667777777777     555 4445555


Q ss_pred             ccccCCCceEecccccccccchhhhcCCCccEEecCCCC----------------------CcCcCcccccccCCCceee
Q 043587          174 IEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCF----------------------DLEELPKGIGKLVNMKHLL  231 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~----------------------~~~~lp~~l~~l~~L~~L~  231 (285)
                      ++.+..|..++..+|++..+|++++++.+|..+++.+|+                      .++.+|+.++.+.+|..|+
T Consensus       133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly  212 (565)
T KOG0472|consen  133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY  212 (565)
T ss_pred             HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH
Confidence            665555666666555555555555555555555555554                      1444444455555555555


Q ss_pred             cCCCCCCcccCCCCCCCCcCCcccccc--ccCCccc-cccCCcCCCceeccc
Q 043587          232 NSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLES-LKNLEHLQICGIRRL  280 (285)
Q Consensus       232 l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~-l~~l~~L~~L~i~~~  280 (285)
                      +..|++. .+| .|+.++.|.+|.+..  ..-.+++ +..|++|.+||+...
T Consensus       213 L~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN  262 (565)
T KOG0472|consen  213 LRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN  262 (565)
T ss_pred             hhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc
Confidence            5444433 444 455555555555444  1222222 346666666666543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.23  E-value=5.4e-13  Score=122.96  Aligned_cols=116  Identities=22%  Similarity=0.320  Sum_probs=67.3

Q ss_pred             cccCCCcccccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCccc
Q 043587          163 RSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYM  241 (285)
Q Consensus       163 ~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~  241 (285)
                      +|.+....-..+-++++|+.|++++|++..+|. .+.++..|+.|+++||+ ++.+|..+.+++.|+.|...+|.+. ..
T Consensus       368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~-~f  445 (1081)
T KOG0618|consen  368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLL-SF  445 (1081)
T ss_pred             cCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCcee-ec
Confidence            444444333345556666666666666666664 34466666666666666 6666666666666666666666554 55


Q ss_pred             CCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587          242 PVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       242 p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      | .+..+++|+.++++.   ..........-++|+.||+++..
T Consensus       446 P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  446 P-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             h-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            5 566666666666665   11111111122566666666654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=2.4e-13  Score=119.37  Aligned_cols=169  Identities=21%  Similarity=0.244  Sum_probs=127.1

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ......++++.+....+|..+..+..|..+.+..|.      ...+ +..+..+..|.+|+|+     .|+ ...+|..+
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~------~r~i-p~~i~~L~~lt~l~ls-----~Nq-lS~lp~~l  140 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC------IRTI-PEAICNLEALTFLDLS-----SNQ-LSHLPDGL  140 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhcc------ceec-chhhhhhhHHHHhhhc-----cch-hhcCChhh
Confidence            445556677777777788888888888888887776      5554 5557788888888888     777 67777777


Q ss_pred             cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                      +.|+ |+.|-+++|+++.+|+.++.+..|..|+.+.|. +..+|+.++.+.+|+.|.+..|.+. .+|.++..| .|..|
T Consensus       141 C~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~l  216 (722)
T KOG0532|consen  141 CDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRL  216 (722)
T ss_pred             hcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeee
Confidence            7665 788888888888888888877888888888887 7778888888888888888777665 677777744 37777


Q ss_pred             cccc--ccCCccccccCCcCCCceeccc
Q 043587          255 GEFT--KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       255 ~l~~--~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      +++.  ...+|..+.+|+.|++|-+.+.
T Consensus       217 DfScNkis~iPv~fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  217 DFSCNKISYLPVDFRKMRHLQVLQLENN  244 (722)
T ss_pred             ecccCceeecchhhhhhhhheeeeeccC
Confidence            7777  5567777788888887766654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.15  E-value=2.2e-11  Score=104.72  Aligned_cols=177  Identities=15%  Similarity=0.142  Sum_probs=122.4

Q ss_pred             CCCceeEEEEEecCCcc-------cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCc---cceeeeccccccc
Q 043587           94 LDEKVRHLMLIIGEGAI-------FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTS---LRALDFCESYHSR  163 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~-------~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~---L~~L~L~~~~~~~  163 (285)
                      ..++++++.+.......       .+..+..+++|+.|+++++.     +... .+..+..+..   |+.|+++     +
T Consensus        49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-----~~~~-~~~~~~~l~~~~~L~~L~ls-----~  117 (319)
T cd00116          49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-----LGPD-GCGVLESLLRSSSLQELKLN-----N  117 (319)
T ss_pred             hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC-----CChh-HHHHHHHHhccCcccEEEee-----C
Confidence            34458888888776541       33466678899999999987     2322 3444555544   9999999     7


Q ss_pred             ccCCC----ccccccccc-CCCceEeccccccc-----ccchhhhcCCCccEEecCCCCCcC----cCcccccccCCCce
Q 043587          164 SSLTP----EIPRNIEKL-VHLRYLSLSFQHIE-----KLPETLCELYNLETLDISGCFDLE----ELPKGIGKLVNMKH  229 (285)
Q Consensus       164 ~~~~~----~~p~~i~~l-~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~  229 (285)
                      |.+..    .+...+..+ ++|+.|++++|.++     .++..+..+++|++|++++|...+    .++..+..+++|++
T Consensus       118 ~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~  197 (319)
T cd00116         118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV  197 (319)
T ss_pred             CccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCE
Confidence            77442    233455666 89999999999977     345566777899999999998432    23445566679999


Q ss_pred             eecCCCCCCc----ccCCCCCCCCcCCcccccc---ccCCccccc-----cCCcCCCceecccC
Q 043587          230 LLNSRTSSVR----YMPVGIGRLTGLRTLGEFT---KACRLESLK-----NLEHLQICGIRRLG  281 (285)
Q Consensus       230 L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~---~~~~~~~l~-----~l~~L~~L~i~~~~  281 (285)
                      |++++|.+.+    .++..+..+++|++|++++   ....+..+.     ..+.|+.|++.++.
T Consensus       198 L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             EeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence            9999997753    2445577888999999987   211222221     24789999998774

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.15  E-value=2.6e-10  Score=107.41  Aligned_cols=160  Identities=18%  Similarity=0.260  Sum_probs=96.3

Q ss_pred             CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      .+..++.|.+..+.+..+|..+.  .+|++|++++|.      ...++.. +.  .+|+.|+++     +|+ ...+|..
T Consensus       197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~------LtsLP~~-l~--~~L~~L~Ls-----~N~-L~~LP~~  259 (754)
T PRK15370        197 IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ------LTSIPAT-LP--DTIQEMELS-----INR-ITELPER  259 (754)
T ss_pred             cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc------cccCChh-hh--ccccEEECc-----CCc-cCcCChh
Confidence            56788999999988887766543  588899988887      3344322 22  357777777     666 4456655


Q ss_pred             ccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCccccc-------------------ccCCCceeecCC
Q 043587          174 IEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIG-------------------KLVNMKHLLNSR  234 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~-------------------~l~~L~~L~l~~  234 (285)
                      +.  .+|++|++++|.++.+|..+.  .+|+.|++++|+ +..+|..+.                   -.++|+.|++++
T Consensus       260 l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~  334 (754)
T PRK15370        260 LP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGE  334 (754)
T ss_pred             Hh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCccccccceeccccC
Confidence            43  367777777777777766543  467777777775 555554321                   113455555555


Q ss_pred             CCCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceeccc
Q 043587          235 TSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       235 ~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      |.+. .+|..+.  ++|+.|++++  -...+..+  .++|+.|+++++
T Consensus       335 N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N  377 (754)
T PRK15370        335 NALT-SLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRN  377 (754)
T ss_pred             Cccc-cCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCC
Confidence            5444 3444332  4666666665  11222222  246777777665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.13  E-value=2.2e-11  Score=104.71  Aligned_cols=65  Identities=23%  Similarity=0.211  Sum_probs=28.7

Q ss_pred             ccccCCCceEeccccccc-----ccchhhhcCCCccEEecCCCCCcC----cCcccccccCCCceeecCCCCCC
Q 043587          174 IEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDISGCFDLE----ELPKGIGKLVNMKHLLNSRTSSV  238 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~l~~~~~~  238 (285)
                      +..+.+|++|++++|.++     .++..+..+++|+.|++++|....    .++..+..+++|++|++++|.+.
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            334445555555555543     122233334455555555554211    12223334455555555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.12  E-value=4.6e-11  Score=114.11  Aligned_cols=150  Identities=30%  Similarity=0.331  Sum_probs=117.9

Q ss_pred             hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccC-CCccc-ccccccCCCceEeccccc-ccc
Q 043587          116 RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSL-TPEIP-RNIEKLVHLRYLSLSFQH-IEK  192 (285)
Q Consensus       116 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~p-~~i~~l~~L~~L~l~~~~-l~~  192 (285)
                      .+....|...+.++.      ...+ +. -...+.|+.|-+.     +|.. ...++ ..|..++.|++||+++|. +.+
T Consensus       520 ~~~~~~rr~s~~~~~------~~~~-~~-~~~~~~L~tLll~-----~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~  586 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNK------IEHI-AG-SSENPKLRTLLLQ-----RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK  586 (889)
T ss_pred             cchhheeEEEEeccc------hhhc-cC-CCCCCccceEEEe-----ecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence            455778888888886      3332 22 1345579999988     6641 33333 346779999999999887 889


Q ss_pred             cchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc-----ccCCccccc
Q 043587          193 LPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-----KACRLESLK  267 (285)
Q Consensus       193 lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-----~~~~~~~l~  267 (285)
                      +|+.|+.|-+|++|+++++. +..+|.++++|++|.+|++..+......|.....+++|++|.+..     +.....++.
T Consensus       587 LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~  665 (889)
T KOG4658|consen  587 LPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELE  665 (889)
T ss_pred             CChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhh
Confidence            99999999999999999998 889999999999999999998876656666666799999999887     456677777


Q ss_pred             cCCcCCCceecc
Q 043587          268 NLEHLQICGIRR  279 (285)
Q Consensus       268 ~l~~L~~L~i~~  279 (285)
                      +|++|+.+.++.
T Consensus       666 ~Le~L~~ls~~~  677 (889)
T KOG4658|consen  666 NLEHLENLSITI  677 (889)
T ss_pred             cccchhhheeec
Confidence            778887776654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.10  E-value=3.5e-11  Score=101.68  Aligned_cols=176  Identities=19%  Similarity=0.198  Sum_probs=114.5

Q ss_pred             CCCCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeeccccccc-ccCCCcc
Q 043587           93 SLDEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSR-SSLTPEI  170 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~  170 (285)
                      ..+.....+.+..+++..+| .+|..+++||.|++++|.      +..|-|++|.+++.+..|-+-     + |. +..+
T Consensus        64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~------Is~I~p~AF~GL~~l~~Lvly-----g~Nk-I~~l  131 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN------ISFIAPDAFKGLASLLSLVLY-----GNNK-ITDL  131 (498)
T ss_pred             cCCCcceEEEeccCCcccCChhhccchhhhceecccccc------hhhcChHhhhhhHhhhHHHhh-----cCCc-hhhh
Confidence            57888889999999988855 488899999999999998      777778888888887776665     3 33 4444


Q ss_pred             cc-------------------------cccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCc----------
Q 043587          171 PR-------------------------NIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDL----------  214 (285)
Q Consensus       171 p~-------------------------~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~----------  214 (285)
                      |+                         .+..+++|..|.+-.|.+..++. .+..+..++++.+..|..+          
T Consensus       132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~  211 (498)
T KOG4237|consen  132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD  211 (498)
T ss_pred             hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence            42                         33334444444444444444443 3344445555554443310          


Q ss_pred             ---------------------------------------------------CcCcc-cccccCCCceeecCCCCCCcccC
Q 043587          215 ---------------------------------------------------EELPK-GIGKLVNMKHLLNSRTSSVRYMP  242 (285)
Q Consensus       215 ---------------------------------------------------~~lp~-~l~~l~~L~~L~l~~~~~~~~~p  242 (285)
                                                                         ...|. .|..|++|+.|++++|++.+.-+
T Consensus       212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~  291 (498)
T KOG4237|consen  212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED  291 (498)
T ss_pred             HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence                                                               11121 35678888888888888887777


Q ss_pred             CCCCCCCcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587          243 VGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       243 ~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      .+|..+..+++|.+..   ....-..+.++..|+.|++++.
T Consensus       292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N  332 (498)
T KOG4237|consen  292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN  332 (498)
T ss_pred             hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC
Confidence            7788888888887776   2222333566667777776654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.10  E-value=1.6e-11  Score=113.37  Aligned_cols=150  Identities=21%  Similarity=0.261  Sum_probs=114.2

Q ss_pred             CCCceeEEEEEecCCcccccchhcc--------------------------ccccEEeecCCCCCCCCchhhHHHHHHhc
Q 043587           94 LDEKVRHLMLIIGEGAIFPVSTRRI--------------------------KRMRSLLIDGGRSDHSSLNGEILEELFRE  147 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~~~~~l--------------------------~~L~~L~l~~~~~~~~~l~~~~~~~~~~~  147 (285)
                      ..+.+++|+++.+.+..+|+.+...                          +.|+.|++.+|.     +.....| .+.+
T Consensus       308 ~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-----Ltd~c~p-~l~~  381 (1081)
T KOG0618|consen  308 GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-----LTDSCFP-VLVN  381 (1081)
T ss_pred             ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-----ccccchh-hhcc
Confidence            4567788888877766544422111                          124444444444     3444333 3788


Q ss_pred             CCccceeeecccccccccCCCcccc-cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCC
Q 043587          148 LTSLRALDFCESYHSRSSLTPEIPR-NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVN  226 (285)
Q Consensus       148 ~~~L~~L~L~~~~~~~~~~~~~~p~-~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~  226 (285)
                      +++|++|+|+     +|. .+.+|+ .+.++..|+.|+++||.++.+|..+.++..|++|...+|. +..+| .+.+++.
T Consensus       382 ~~hLKVLhLs-----yNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~q  453 (1081)
T KOG0618|consen  382 FKHLKVLHLS-----YNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQ  453 (1081)
T ss_pred             ccceeeeeec-----ccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCc
Confidence            9999999999     888 777775 4678999999999999999999999999999999999998 88999 8999999


Q ss_pred             CceeecCCCCCCc-ccCCCCCCCCcCCcccccc
Q 043587          227 MKHLLNSRTSSVR-YMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       227 L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~  258 (285)
                      |+.+|++.|++.. .+|..... ++|+.|++++
T Consensus       454 L~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSG  485 (1081)
T KOG0618|consen  454 LKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSG  485 (1081)
T ss_pred             ceEEecccchhhhhhhhhhCCC-cccceeeccC
Confidence            9999999998764 23333333 8999999998

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=7.8e-11  Score=91.38  Aligned_cols=127  Identities=23%  Similarity=0.296  Sum_probs=50.6

Q ss_pred             hhccccccEEeecCCCCCCCCchhhHHHHHHh-cCCccceeeecccccccccCCCcccccccccCCCceEeccccccccc
Q 043587          115 TRRIKRMRSLLIDGGRSDHSSLNGEILEELFR-ELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL  193 (285)
Q Consensus       115 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l  193 (285)
                      +.+..+++.|++.++.      +..+ .. ++ .+.+|++|+++     +|. +..++ .+..+++|++|++++|.++.+
T Consensus        15 ~~n~~~~~~L~L~~n~------I~~I-e~-L~~~l~~L~~L~Ls-----~N~-I~~l~-~l~~L~~L~~L~L~~N~I~~i   79 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQ------ISTI-EN-LGATLDKLEVLDLS-----NNQ-ITKLE-GLPGLPRLKTLDLSNNRISSI   79 (175)
T ss_dssp             ----------------------------S---TT-TT--EEE-T-----TS---S--T-T----TT--EEE--SS---S-
T ss_pred             cccccccccccccccc------cccc-cc-hhhhhcCCCEEECC-----CCC-Ccccc-CccChhhhhhcccCCCCCCcc
Confidence            3455678888888887      4443 22 44 46788999998     887 55553 577788999999999999888


Q ss_pred             chhhh-cCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCCcccCC----CCCCCCcCCcccccc
Q 043587          194 PETLC-ELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSVRYMPV----GIGRLTGLRTLGEFT  258 (285)
Q Consensus       194 p~~i~-~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~l~~  258 (285)
                      ++.+. .+++|+.|++++|+ +..+-  ..+..+++|++|++.+|++... +.    -+..+++|+.||...
T Consensus        80 ~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   80 SEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEE
T ss_pred             ccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEE
Confidence            66553 68899999999987 54442  3567888999999999987642 32    366788888888765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.06  E-value=2.6e-10  Score=107.45  Aligned_cols=159  Identities=23%  Similarity=0.277  Sum_probs=101.0

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ..+++.|.+..+.+..+|..+.  .+|+.|++++|.      ...++.. +.  .+|+.|+++     +|+ ...+|..+
T Consensus       219 ~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~------L~~LP~~-l~--s~L~~L~Ls-----~N~-L~~LP~~l  281 (754)
T PRK15370        219 QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINR------ITELPER-LP--SALQSLDLF-----HNK-ISCLPENL  281 (754)
T ss_pred             ccCCCEEECCCCccccCChhhh--ccccEEECcCCc------cCcCChh-Hh--CCCCEEECc-----CCc-cCcccccc
Confidence            4578888888877766655443  367777777776      3343222 22  356777776     665 33455544


Q ss_pred             cccCCCceEecccccccccchhhh-------------------cCCCccEEecCCCCCcCcCcccccccCCCceeecCCC
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLC-------------------ELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRT  235 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~-------------------~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~  235 (285)
                      .  .+|++|++++|.++.+|..+.                   -.++|+.|++++|. +..+|..+.  ++|+.|++++|
T Consensus       282 ~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N  356 (754)
T PRK15370        282 P--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPASLP--PELQVLDVSKN  356 (754)
T ss_pred             C--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc-cccCChhhc--CcccEEECCCC
Confidence            3  356666666666555543221                   12578888888887 667887653  68999999999


Q ss_pred             CCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceeccc
Q 043587          236 SSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       236 ~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      ++. .+|..+.  ++|+.|++++  -...+..+.  ..|+.|+++++
T Consensus       357 ~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N  398 (754)
T PRK15370        357 QIT-VLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRN  398 (754)
T ss_pred             CCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccC
Confidence            876 6776553  6899999987  223333333  24667776654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=2.9e-10  Score=100.83  Aligned_cols=170  Identities=25%  Similarity=0.311  Sum_probs=133.3

Q ss_pred             CceeEEEEEecCCcccccchhccc-cccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           96 EKVRHLMLIIGEGAIFPVSTRRIK-RMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      +.+..+.+..+.+..++....... +|+.|++.+|.      ...+ +..+..+++|+.|+++     .|+ +..+|...
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~------i~~l-~~~~~~l~~L~~L~l~-----~N~-l~~l~~~~  182 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK------IESL-PSPLRNLPNLKNLDLS-----FND-LSDLPKLL  182 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccc------hhhh-hhhhhccccccccccC-----Cch-hhhhhhhh
Confidence            467888888888887777777774 89999999987      5554 3447888999999998     888 77777776


Q ss_pred             cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                      +.++.|+.|++++|.+..+|..++.+..|+++.+++|. ....+..+.++.++..+.+.+|++. ..|..++.+++++.|
T Consensus       183 ~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L  260 (394)
T COG4886         183 SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETL  260 (394)
T ss_pred             hhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceee-eccchhcccccccee
Confidence            68888999999999999998877777779999999886 5556667888888888887777554 457788888899999


Q ss_pred             cccc-ccCCccccccCCcCCCceeccc
Q 043587          255 GEFT-KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       255 ~l~~-~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      +++. ....+..++.+.+|+.|++++.
T Consensus       261 ~~s~n~i~~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         261 DLSNNQISSISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             ccccccccccccccccCccCEEeccCc
Confidence            9888 3334444888888888888764

>PLN03150 hypothetical protein; Provisional

Probab=99.02  E-value=5e-10  Score=104.45  Aligned_cols=103  Identities=25%  Similarity=0.334  Sum_probs=85.4

Q ss_pred             cceeeecccccccccCCCcccccccccCCCceEeccccccc-ccchhhhcCCCccEEecCCCCCcCcCcccccccCCCce
Q 043587          151 LRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE-KLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKH  229 (285)
Q Consensus       151 L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~  229 (285)
                      ++.|+|+     +|.+.+.+|..++.+.+|++|+|++|.+. .+|..++.+++|+.|++++|+..+.+|..++++++|++
T Consensus       420 v~~L~L~-----~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~  494 (623)
T PLN03150        420 IDGLGLD-----NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI  494 (623)
T ss_pred             EEEEECC-----CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence            6778888     88877888888999999999999999876 77888889999999999999877788888999999999


Q ss_pred             eecCCCCCCcccCCCCCCC-CcCCcccccc
Q 043587          230 LLNSRTSSVRYMPVGIGRL-TGLRTLGEFT  258 (285)
Q Consensus       230 L~l~~~~~~~~~p~~~~~l-~~L~~L~l~~  258 (285)
                      |++++|.+.+.+|..++.+ .++..+++.+
T Consensus       495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~  524 (623)
T PLN03150        495 LNLNGNSLSGRVPAALGGRLLHRASFNFTD  524 (623)
T ss_pred             EECcCCcccccCChHHhhccccCceEEecC
Confidence            9999998888888877653 3555665554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.00  E-value=2.6e-10  Score=88.45  Aligned_cols=124  Identities=24%  Similarity=0.270  Sum_probs=53.1

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      +..++.|++.++.+..+...-..+.+|+.|++++|.      ...+ .. +..++.|+.|+++     +|. +..++..+
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~------I~~l-~~-l~~L~~L~~L~L~-----~N~-I~~i~~~l   83 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ------ITKL-EG-LPGLPRLKTLDLS-----NNR-ISSISEGL   83 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--------S---TT-----TT--EEE-------SS----S-CHHH
T ss_pred             ccccccccccccccccccchhhhhcCCCEEECCCCC------Cccc-cC-ccChhhhhhcccC-----CCC-CCccccch
Confidence            456799999999988654332367899999999998      5554 33 7789999999999     888 55565455


Q ss_pred             -cccCCCceEecccccccccc--hhhhcCCCccEEecCCCCCcCcCcc----cccccCCCceeecC
Q 043587          175 -EKLVHLRYLSLSFQHIEKLP--ETLCELYNLETLDISGCFDLEELPK----GIGKLVNMKHLLNS  233 (285)
Q Consensus       175 -~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~l~  233 (285)
                       ..+++|+.|++++|++..+-  ..+..+++|+.|++.+|. ....+.    -+..+|+|+.||-.
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCE
Confidence             36899999999999987553  467789999999999998 544443    45789999999864

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.98  E-value=3.5e-09  Score=99.63  Aligned_cols=32  Identities=22%  Similarity=0.175  Sum_probs=19.7

Q ss_pred             cCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587          250 GLRTLGEFT--KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       250 ~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      +|+.|++++  -...|..+..+++|+.|+++++.
T Consensus       423 ~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        423 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             hhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence            445555555  33455667777777777776653

>PLN03150 hypothetical protein; Provisional

Probab=98.91  E-value=2.7e-09  Score=99.58  Aligned_cols=112  Identities=21%  Similarity=0.376  Sum_probs=95.5

Q ss_pred             cccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccc-ccchhhh
Q 043587          120 RMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE-KLPETLC  198 (285)
Q Consensus       120 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~-~lp~~i~  198 (285)
                      .++.|++.++.     +.+.+ |..+..+++|+.|+|+     +|.+.+.+|..++.+.+|++|++++|.+. .+|+.++
T Consensus       419 ~v~~L~L~~n~-----L~g~i-p~~i~~L~~L~~L~Ls-----~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~  487 (623)
T PLN03150        419 FIDGLGLDNQG-----LRGFI-PNDISKLRHLQSINLS-----GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG  487 (623)
T ss_pred             EEEEEECCCCC-----ccccC-CHHHhCCCCCCEEECC-----CCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence            47888998887     45565 5569999999999999     99988899999999999999999999987 7899999


Q ss_pred             cCCCccEEecCCCCCcCcCccccccc-CCCceeecCCCCCCcccC
Q 043587          199 ELYNLETLDISGCFDLEELPKGIGKL-VNMKHLLNSRTSSVRYMP  242 (285)
Q Consensus       199 ~l~~L~~L~l~~~~~~~~lp~~l~~l-~~L~~L~l~~~~~~~~~p  242 (285)
                      ++++|+.|++++|...+.+|..++.+ .++..+++.+|......|
T Consensus       488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            99999999999999888999988764 467889998886554444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.91  E-value=3.8e-11  Score=105.78  Aligned_cols=145  Identities=22%  Similarity=0.302  Sum_probs=118.3

Q ss_pred             ceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccc
Q 043587           97 KVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEK  176 (285)
Q Consensus        97 ~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~  176 (285)
                      .+..+.++.+.+..++..++.+..|.+|+++.|+      .... |..+..++ |++|-++     +|+ .+.+|..++.
T Consensus        99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq------lS~l-p~~lC~lp-Lkvli~s-----NNk-l~~lp~~ig~  164 (722)
T KOG0532|consen   99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ------LSHL-PDGLCDLP-LKVLIVS-----NNK-LTSLPEEIGL  164 (722)
T ss_pred             HHHHHHHHhccceecchhhhhhhHHHHhhhccch------hhcC-ChhhhcCc-ceeEEEe-----cCc-cccCCccccc
Confidence            3455556666666688899999999999999998      4453 33355454 8899888     777 7888888998


Q ss_pred             cCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccc
Q 043587          177 LVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGE  256 (285)
Q Consensus       177 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  256 (285)
                      +.+|..|+.+.|.+..+|..++.+.+|+.|.++.|+ +..+|+.+..| .|..||++.|++. .+|-.|.+|..|++|-+
T Consensus       165 ~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~L  241 (722)
T KOG0532|consen  165 LPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQL  241 (722)
T ss_pred             chhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeee
Confidence            888999999999999999999999999999999988 78888888854 6889999888776 88999999999999988


Q ss_pred             cc
Q 043587          257 FT  258 (285)
Q Consensus       257 ~~  258 (285)
                      .+
T Consensus       242 en  243 (722)
T KOG0532|consen  242 EN  243 (722)
T ss_pred             cc
Confidence            87

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=1.7e-10  Score=94.50  Aligned_cols=129  Identities=24%  Similarity=0.238  Sum_probs=74.0

Q ss_pred             chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccccc
Q 043587          114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL  193 (285)
Q Consensus       114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l  193 (285)
                      .+.....|+++++++|.      +..+ .....-.+.+++|+++     +|. +..+. ++..+++|..||+++|.++++
T Consensus       279 ~~dTWq~LtelDLS~N~------I~~i-DESvKL~Pkir~L~lS-----~N~-i~~v~-nLa~L~~L~~LDLS~N~Ls~~  344 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNL------ITQI-DESVKLAPKLRRLILS-----QNR-IRTVQ-NLAELPQLQLLDLSGNLLAEC  344 (490)
T ss_pred             ecchHhhhhhccccccc------hhhh-hhhhhhccceeEEecc-----ccc-eeeeh-hhhhcccceEeecccchhHhh
Confidence            33444566666776665      4443 3334555666667766     555 33332 355566666666666666666


Q ss_pred             chhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCc-ccCCCCCCCCcCCcccccc
Q 043587          194 PETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVR-YMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       194 p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~  258 (285)
                      ..+-.+|-+.++|.+++|. ++.+. ++++|.+|..||+++|++-. .-...||+++.|+.+.+-+
T Consensus       345 ~Gwh~KLGNIKtL~La~N~-iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~  408 (490)
T KOG1259|consen  345 VGWHLKLGNIKTLKLAQNK-IETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG  408 (490)
T ss_pred             hhhHhhhcCEeeeehhhhh-Hhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence            5444456666666666665 55553 56666666666666665432 1124566666666665554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.84  E-value=2.5e-08  Score=93.94  Aligned_cols=119  Identities=19%  Similarity=0.150  Sum_probs=59.5

Q ss_pred             CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHH-----------------hcCCccceeee
Q 043587           94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELF-----------------RELTSLRALDF  156 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~-----------------~~~~~L~~L~L  156 (285)
                      .+.+++.|.+..+.+..+|.   .+++|++|++++|.      ...+ |..+                 ....+|+.|++
T Consensus       220 l~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~------LtsL-P~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~L  289 (788)
T PRK15387        220 LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ------LTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWI  289 (788)
T ss_pred             hhcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCc------cCcc-cCcccccceeeccCCchhhhhhchhhcCEEEC
Confidence            34466777777776665443   24667777777765      2222 1100                 01123444555


Q ss_pred             cccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCC
Q 043587          157 CESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTS  236 (285)
Q Consensus       157 ~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~  236 (285)
                      +     +|+ ...+|..   +++|++|++++|+++.+|...   .+|+.|++++|. ++.+|.   ...+|++|++++|+
T Consensus       290 s-----~N~-Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~---lp~~Lq~LdLS~N~  353 (788)
T PRK15387        290 F-----GNQ-LTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPT---LPSGLQELSVSDNQ  353 (788)
T ss_pred             c-----CCc-ccccccc---ccccceeECCCCccccCCCCc---ccccccccccCc-cccccc---cccccceEecCCCc
Confidence            5     555 3344432   356777777777777665421   233444444443 333332   11245555555554


Q ss_pred             CC
Q 043587          237 SV  238 (285)
Q Consensus       237 ~~  238 (285)
                      +.
T Consensus       354 Ls  355 (788)
T PRK15387        354 LA  355 (788)
T ss_pred             cC
Confidence            44

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.83  E-value=2.2e-09  Score=95.23  Aligned_cols=166  Identities=26%  Similarity=0.326  Sum_probs=127.4

Q ss_pred             EEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCC-ccceeeecccccccccCCCcccccccccCC
Q 043587          101 LMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELT-SLRALDFCESYHSRSSLTPEIPRNIEKLVH  179 (285)
Q Consensus       101 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~  179 (285)
                      +....+........+..++.++.|.+.++.      ..++ +.....+. +|+.|+++     +|+ +..+|..++.++.
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~------i~~i-~~~~~~~~~nL~~L~l~-----~N~-i~~l~~~~~~l~~  164 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNN------ITDI-PPLIGLLKSNLKELDLS-----DNK-IESLPSPLRNLPN  164 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcc------cccC-ccccccchhhccccccc-----ccc-hhhhhhhhhcccc
Confidence            444444443334455666789999999887      5554 33345553 89999999     888 7777778899999


Q ss_pred             CceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc-
Q 043587          180 LRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-  258 (285)
Q Consensus       180 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-  258 (285)
                      |+.|+++.|++..+|...+.+++|+.|++++|+ +..+|..+..+..|+.|.+++|... ..+..+..+.++..+.+.+ 
T Consensus       165 L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n  242 (394)
T COG4886         165 LKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNN  242 (394)
T ss_pred             ccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCc
Confidence            999999999999999877788999999999998 8889887777777999999988644 5667788888888888666 


Q ss_pred             -ccCCccccccCCcCCCceecccC
Q 043587          259 -KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       259 -~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                       ....+..++.++.++.|++++..
T Consensus       243 ~~~~~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         243 KLEDLPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             eeeeccchhccccccceecccccc
Confidence             22336778888888888887654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.80  E-value=1.1e-09  Score=89.87  Aligned_cols=128  Identities=26%  Similarity=0.288  Sum_probs=78.2

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      +..+..++++.+.+..+..++.=.+.+|.|++++|.      ...+ .. +..+++|..|||+     +|. ...+..+-
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~------i~~v-~n-La~L~~L~~LDLS-----~N~-Ls~~~Gwh  348 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR------IRTV-QN-LAELPQLQLLDLS-----GNL-LAECVGWH  348 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccc------eeee-hh-hhhcccceEeecc-----cch-hHhhhhhH
Confidence            445566666666666556666666677777777776      3332 22 5666677777776     555 33333344


Q ss_pred             cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCC
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSV  238 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~  238 (285)
                      .++-+.+.|.+++|.++.+ +++++|.+|..||+++|+ ++.+.  .+||+||.|+++.+.+|++.
T Consensus       349 ~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  349 LKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence            4555666777777766665 356667777777777766 44442  35667777777777666655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=2.4e-09  Score=91.81  Aligned_cols=101  Identities=24%  Similarity=0.185  Sum_probs=49.3

Q ss_pred             ccCCCceEeccccc-ccccchhhhcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCCc-ccCCC-----CC
Q 043587          176 KLVHLRYLSLSFQH-IEKLPETLCELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSVR-YMPVG-----IG  246 (285)
Q Consensus       176 ~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~-~~p~~-----~~  246 (285)
                      .+++|+.|.+.+|. +..-.....-++.|+.|+|++|+ +-..+  ..++.++.|+.|+++.|.+.. ..|+.     ..
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH  298 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence            34555555555552 11111112234556666666665 33333  345566666666666664432 22322     24


Q ss_pred             CCCcCCcccccc----ccCCccccccCCcCCCcee
Q 043587          247 RLTGLRTLGEFT----KACRLESLKNLEHLQICGI  277 (285)
Q Consensus       247 ~l~~L~~L~l~~----~~~~~~~l~~l~~L~~L~i  277 (285)
                      .+++|+.|++..    .+..+..+..+++|+.|.+
T Consensus       299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             ccccceeeecccCccccccccchhhccchhhhhhc
Confidence            455666666555    3445555555555555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.70  E-value=1.4e-08  Score=64.95  Aligned_cols=57  Identities=33%  Similarity=0.485  Sum_probs=30.8

Q ss_pred             CCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCC
Q 043587          179 HLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTS  236 (285)
Q Consensus       179 ~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~  236 (285)
                      +|++|++++|+++.+|+ .+.++++|++|++++|. +..+| ..+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555555553 34455566666666555 33333 244555666666665553

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=9.6e-09  Score=88.17  Aligned_cols=87  Identities=17%  Similarity=0.160  Sum_probs=42.9

Q ss_pred             HhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccc--hhhhcCCCccEEecCCCCCcCcC--ccc
Q 043587          145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLP--ETLCELYNLETLDISGCFDLEEL--PKG  220 (285)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~l--p~~  220 (285)
                      ...+++|.+|+|+     +|......-....-+..|+.|+|++|.+-..+  ..++.++.|+.|+++.|. +..+  |+.
T Consensus       218 ~~~fPsl~~L~L~-----~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~  291 (505)
T KOG3207|consen  218 LLTFPSLEVLYLE-----ANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDV  291 (505)
T ss_pred             HHhCCcHHHhhhh-----cccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCc
Confidence            3445555555555     44212211111222445666666666644444  345566666666666665 3221  221


Q ss_pred             -----ccccCCCceeecCCCCC
Q 043587          221 -----IGKLVNMKHLLNSRTSS  237 (285)
Q Consensus       221 -----l~~l~~L~~L~l~~~~~  237 (285)
                           ...+++|++|++..|++
T Consensus       292 ~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  292 ESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             cchhhhcccccceeeecccCcc
Confidence                 23456666666666655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.56  E-value=7.5e-08  Score=61.48  Aligned_cols=58  Identities=31%  Similarity=0.480  Sum_probs=46.8

Q ss_pred             CccceeeecccccccccCCCccc-ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCC
Q 043587          149 TSLRALDFCESYHSRSSLTPEIP-RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCF  212 (285)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~~~~~p-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~  212 (285)
                      ++|++|+++     +|+ ...+| ..+..+++|++|++++|.++.+|+ .+.++++|++|++++|+
T Consensus         1 p~L~~L~l~-----~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLS-----NNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEET-----SST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECC-----CCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            468888888     887 44554 677888999999999999888865 66789999999998886

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.43  E-value=1.5e-08  Score=86.10  Aligned_cols=141  Identities=18%  Similarity=0.140  Sum_probs=107.0

Q ss_pred             EEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCce
Q 043587          103 LIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRY  182 (285)
Q Consensus       103 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~  182 (285)
                      ........+|..+.  ..-..+.+..|.      +..+++.+|+.+++||.|||+     .|+|...-|..|..+..|-.
T Consensus        53 Cr~~GL~eVP~~LP--~~tveirLdqN~------I~~iP~~aF~~l~~LRrLdLS-----~N~Is~I~p~AF~GL~~l~~  119 (498)
T KOG4237|consen   53 CRGKGLTEVPANLP--PETVEIRLDQNQ------ISSIPPGAFKTLHRLRRLDLS-----KNNISFIAPDAFKGLASLLS  119 (498)
T ss_pred             ccCCCcccCcccCC--CcceEEEeccCC------cccCChhhccchhhhceeccc-----ccchhhcChHhhhhhHhhhH
Confidence            33344444443322  346677888888      888899999999999999999     89966667899999999888


Q ss_pred             Eeccc-ccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCC-CCCCCCcCCccccc
Q 043587          183 LSLSF-QHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPV-GIGRLTGLRTLGEF  257 (285)
Q Consensus       183 L~l~~-~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~  257 (285)
                      |-+.+ |+|+.+|. .+++|.+|+-|.+.-|+........+..|++|+.|.+.+|.+. .++. .+..+.+++++.+.
T Consensus       120 Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA  196 (498)
T KOG4237|consen  120 LVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLA  196 (498)
T ss_pred             HHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhh
Confidence            76655 88999996 5779999999999998844444567889999999999888655 4443 56667777766554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.32  E-value=7.6e-07  Score=52.50  Aligned_cols=34  Identities=44%  Similarity=0.526  Sum_probs=17.0

Q ss_pred             CCceEecccccccccchhhhcCCCccEEecCCCC
Q 043587          179 HLRYLSLSFQHIEKLPETLCELYNLETLDISGCF  212 (285)
Q Consensus       179 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~  212 (285)
                      +|++|++++|+++.+|+.++++++|++|++++|+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence            4555555555555555445555555555555554

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.4e-08  Score=83.29  Aligned_cols=171  Identities=18%  Similarity=0.142  Sum_probs=96.6

Q ss_pred             ceeEEEEEecCCcc--cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc--cc
Q 043587           97 KVRHLMLIIGEGAI--FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI--PR  172 (285)
Q Consensus        97 ~l~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--p~  172 (285)
                      .+++++++...++.  ....+..+.+|+-|.+.+++     +...+ ...+..-.+|+.|+++     .+.-.+..  .-
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-----LdD~I-~~~iAkN~~L~~lnls-----m~sG~t~n~~~l  254 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-----LDDPI-VNTIAKNSNLVRLNLS-----MCSGFTENALQL  254 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-----cCcHH-HHHHhccccceeeccc-----cccccchhHHHH
Confidence            46666776665554  44456677777777777776     34444 3336666777777777     54422221  12


Q ss_pred             cccccCCCceEeccccccc-----ccchhhhcCCCccEEecCCCCC-cC--cCcccccccCCCceeecCCCCCCc-ccCC
Q 043587          173 NIEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDISGCFD-LE--ELPKGIGKLVNMKHLLNSRTSSVR-YMPV  243 (285)
Q Consensus       173 ~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~-~~--~lp~~l~~l~~L~~L~l~~~~~~~-~~p~  243 (285)
                      -+.++..|..|++++|.+.     .+...++  ++|..|+++||.. +.  .+..-..++|+|.+||+++|.... ..-.
T Consensus       255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~  332 (419)
T KOG2120|consen  255 LLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  332 (419)
T ss_pred             HHHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence            2445667777777777643     1111222  4566667766641 11  111112356677777777764332 1223


Q ss_pred             CCCCCCcCCcccccc----ccCCccccccCCcCCCceeccc
Q 043587          244 GIGRLTGLRTLGEFT----KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       244 ~~~~l~~L~~L~l~~----~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      .|-+++.|++|.++.    .+..+-.+...+.|..|++.+|
T Consensus       333 ~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  333 EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            455666777777666    4555666677777777776655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.30  E-value=1.8e-07  Score=78.33  Aligned_cols=176  Identities=15%  Similarity=0.045  Sum_probs=122.1

Q ss_pred             CCceeEEEEEecCCcc-----cccchhccccccEEeecCCCCCCCCchhhHHHHH-------------HhcCCccceeee
Q 043587           95 DEKVRHLMLIIGEGAI-----FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEEL-------------FRELTSLRALDF  156 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~-------------~~~~~~L~~L~L  156 (285)
                      .+.++.++++.|.+..     +..-+..+..|+.|++++|.      .+..-...             ...-+.||++..
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G------lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~  164 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG------LGPEAGGRLGRALFELAVNKKAASKPKLRVFIC  164 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC------CChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence            3488999999886654     33455678889999999997      33221221             244577999999


Q ss_pred             cccccccccCCCc-----ccccccccCCCceEeccccccc-----ccchhhhcCCCccEEecCCCCCcCc----Cccccc
Q 043587          157 CESYHSRSSLTPE-----IPRNIEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDISGCFDLEE----LPKGIG  222 (285)
Q Consensus       157 ~~~~~~~~~~~~~-----~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~----lp~~l~  222 (285)
                      +     +|. .+.     +...+...+.|+.+.+..|.|.     -+...+..+++|++||++.|.+...    +...+.
T Consensus       165 ~-----rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~  238 (382)
T KOG1909|consen  165 G-----RNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS  238 (382)
T ss_pred             e-----ccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence            8     666 433     3345666789999999999865     2334667889999999999975433    334556


Q ss_pred             ccCCCceeecCCCCCCcccC----CC-CCCCCcCCcccccc-------ccCCccccccCCcCCCceecccCC
Q 043587          223 KLVNMKHLLNSRTSSVRYMP----VG-IGRLTGLRTLGEFT-------KACRLESLKNLEHLQICGIRRLGY  282 (285)
Q Consensus       223 ~l~~L~~L~l~~~~~~~~~p----~~-~~~l~~L~~L~l~~-------~~~~~~~l~~l~~L~~L~i~~~~~  282 (285)
                      .+++|+.|++++|.+...-.    .. -...++|++|.+.+       .......+...+.|+.|++++++-
T Consensus       239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            78899999999996654211    11 23478899999877       233444456688999999988753

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.21  E-value=2e-07  Score=83.23  Aligned_cols=85  Identities=34%  Similarity=0.483  Sum_probs=39.8

Q ss_pred             HhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCccccccc
Q 043587          145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKL  224 (285)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l  224 (285)
                      +..+++|..|++.     .|. +..+...+..+++|++|++++|.|+.+. .+..++.|+.|++.+|. +..++ .+..+
T Consensus        91 l~~~~~l~~l~l~-----~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~-~~~~l  161 (414)
T KOG0531|consen   91 LSKLKSLEALDLY-----DNK-IEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDIS-GLESL  161 (414)
T ss_pred             cccccceeeeecc-----ccc-hhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhcc-CCccc
Confidence            3444555555554     444 3333222444555555555555555442 34444445555555554 43332 33334


Q ss_pred             CCCceeecCCCCCC
Q 043587          225 VNMKHLLNSRTSSV  238 (285)
Q Consensus       225 ~~L~~L~l~~~~~~  238 (285)
                      +.|+.+++++|.+.
T Consensus       162 ~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  162 KSLKLLDLSYNRIV  175 (414)
T ss_pred             hhhhcccCCcchhh
Confidence            55555555555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.16  E-value=2.5e-06  Score=50.24  Aligned_cols=41  Identities=24%  Similarity=0.447  Sum_probs=33.3

Q ss_pred             CccceeeecccccccccCCCcccccccccCCCceEecccccccccch
Q 043587          149 TSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE  195 (285)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~  195 (285)
                      ++|++|+++     +|+ +..+|..++++++|++|++++|+++.++.
T Consensus         1 ~~L~~L~l~-----~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLS-----NNQ-ITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEET-----SSS--SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEcc-----CCC-CcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            478999999     888 66788779999999999999999887753

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.14  E-value=1.8e-06  Score=81.02  Aligned_cols=129  Identities=21%  Similarity=0.179  Sum_probs=65.2

Q ss_pred             ccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCC-cccccccccCCCceEecccccccccchhh
Q 043587          119 KRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTP-EIPRNIEKLVHLRYLSLSFQHIEKLPETL  197 (285)
Q Consensus       119 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~p~~i~~l~~L~~L~l~~~~l~~lp~~i  197 (285)
                      .+|+.|++++...    +....+...-..+|+|+.|.++     +-.+.. ++-.-..++++|..||+++++++.+ .++
T Consensus       122 ~nL~~LdI~G~~~----~s~~W~~kig~~LPsL~sL~i~-----~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI  191 (699)
T KOG3665|consen  122 QNLQHLDISGSEL----FSNGWPKKIGTMLPSLRSLVIS-----GRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI  191 (699)
T ss_pred             HhhhhcCccccch----hhccHHHHHhhhCcccceEEec-----CceecchhHHHHhhccCccceeecCCCCccCc-HHH
Confidence            3566666666542    2222223323345666666665     333221 1222334566666666666666666 466


Q ss_pred             hcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCCccc--C----CCCCCCCcCCcccccc
Q 043587          198 CELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSVRYM--P----VGIGRLTGLRTLGEFT  258 (285)
Q Consensus       198 ~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~--p----~~~~~l~~L~~L~l~~  258 (285)
                      +.|++||+|.+++-. .....  ..+.+|++|+.||+|........  .    +.-..|++|+.|+.++
T Consensus       192 S~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  192 SRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             hccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            666666666666544 22211  24456666666666654332211  0    1112356666666665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.14  E-value=6.3e-07  Score=80.04  Aligned_cols=104  Identities=23%  Similarity=0.300  Sum_probs=70.6

Q ss_pred             CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ....+..+.+..+.+..+...+..+++|+.|++++|.      +..+ .. +..++.|+.|++.     +|. +..+. .
T Consensus        93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~------I~~i-~~-l~~l~~L~~L~l~-----~N~-i~~~~-~  157 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK------ITKL-EG-LSTLTLLKELNLS-----GNL-ISDIS-G  157 (414)
T ss_pred             cccceeeeeccccchhhcccchhhhhcchheeccccc------cccc-cc-hhhccchhhheec-----cCc-chhcc-C
Confidence            4566777777777776555546777888888888886      4443 22 5666668888887     776 44332 4


Q ss_pred             ccccCCCceEecccccccccchh-hhcCCCccEEecCCCC
Q 043587          174 IEKLVHLRYLSLSFQHIEKLPET-LCELYNLETLDISGCF  212 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~  212 (285)
                      +..+..|+.+++++|.+..++.. ...+.+++.+++.+|.
T Consensus       158 ~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  158 LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            44577788888888887766542 4677777777777776

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.11  E-value=1.9e-06  Score=80.93  Aligned_cols=134  Identities=23%  Similarity=0.283  Sum_probs=97.3

Q ss_pred             CCceeEEEEEecCCcc--cccch-hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           95 DEKVRHLMLIIGEGAI--FPVST-RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~--~~~~~-~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..++++|++.+.....  ++..+ .-+|.|++|.+.+-.     +..+-....+.++++|+.||++     +++ +..+ 
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-----~~~~dF~~lc~sFpNL~sLDIS-----~Tn-I~nl-  188 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-----FDNDDFSQLCASFPNLRSLDIS-----GTN-ISNL-  188 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-----ecchhHHHHhhccCccceeecC-----CCC-ccCc-
Confidence            4578888887765433  33333 467999999998865     2333235557899999999999     888 5555 


Q ss_pred             ccccccCCCceEecccccccccc--hhhhcCCCccEEecCCCCCcCcC--c----ccccccCCCceeecCCCCCCcc
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLP--ETLCELYNLETLDISGCFDLEEL--P----KGIGKLVNMKHLLNSRTSSVRY  240 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~l--p----~~l~~l~~L~~L~l~~~~~~~~  240 (285)
                      ..++.+++|+.|.+.+-.+....  ..+.+|++|++||+|........  .    +.-..||.||.||.++..+...
T Consensus       189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            68999999999999988877443  46789999999999987633221  1    1223589999999998765543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.10  E-value=1.3e-07  Score=86.29  Aligned_cols=101  Identities=22%  Similarity=0.277  Sum_probs=45.7

Q ss_pred             CCccceeeecccccccccCCCcccccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCC
Q 043587          148 LTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVN  226 (285)
Q Consensus       148 ~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~  226 (285)
                      ++.++.|+|+     +|+ ..... .+..+++|+.|||++|.++.+|. +.... .|+.|.+++|. ++++- ++.+|++
T Consensus       186 l~ale~LnLs-----hNk-~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~-gie~Lks  255 (1096)
T KOG1859|consen  186 LPALESLNLS-----HNK-FTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLR-GIENLKS  255 (1096)
T ss_pred             HHHhhhhccc-----hhh-hhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhh-hHHhhhh
Confidence            4445555555     555 22222 44455555555555555554443 11122 25555555554 44442 4555555


Q ss_pred             CceeecCCCCCCccc-CCCCCCCCcCCcccccc
Q 043587          227 MKHLLNSRTSSVRYM-PVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       227 L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~  258 (285)
                      |+.||+++|-+.+.- -..+..+..|+.|++.+
T Consensus       256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG  288 (1096)
T KOG1859|consen  256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG  288 (1096)
T ss_pred             hhccchhHhhhhcchhhhHHHHHHHHHHHhhcC
Confidence            555555555333210 01133444445555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=4.7e-07  Score=74.56  Aligned_cols=154  Identities=19%  Similarity=0.111  Sum_probs=108.2

Q ss_pred             CCCceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc--
Q 043587           94 LDEKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI--  170 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--  170 (285)
                      ....++.+++.+..... +...++.-.+|+.|+++.+.    .+...-....+.+++.|..|+++     +|......  
T Consensus       208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s----G~t~n~~~ll~~scs~L~~LNls-----Wc~l~~~~Vt  278 (419)
T KOG2120|consen  208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS----GFTENALQLLLSSCSRLDELNLS-----WCFLFTEKVT  278 (419)
T ss_pred             HHHhhhhccccccccCcHHHHHHhccccceeecccccc----ccchhHHHHHHHhhhhHhhcCch-----Hhhccchhhh
Confidence            45578888999888776 66778888999999998875    24555556668899999999999     66534331  


Q ss_pred             --cccccccCCCceEeccccc----ccccchhhhcCCCccEEecCCCCCcCc-CcccccccCCCceeecCCCCCCc-ccC
Q 043587          171 --PRNIEKLVHLRYLSLSFQH----IEKLPETLCELYNLETLDISGCFDLEE-LPKGIGKLVNMKHLLNSRTSSVR-YMP  242 (285)
Q Consensus       171 --p~~i~~l~~L~~L~l~~~~----l~~lp~~i~~l~~L~~L~l~~~~~~~~-lp~~l~~l~~L~~L~l~~~~~~~-~~p  242 (285)
                        -..++  ++|..|+++|+.    ...+..-....++|..||++.|..+.. .-..+.+++.|++|.++.|.... ..-
T Consensus       279 v~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~  356 (419)
T KOG2120|consen  279 VAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL  356 (419)
T ss_pred             HHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHe
Confidence              12232  568889998886    222323345778899999999864443 23456788899999998885321 111


Q ss_pred             CCCCCCCcCCcccccc
Q 043587          243 VGIGRLTGLRTLGEFT  258 (285)
Q Consensus       243 ~~~~~l~~L~~L~l~~  258 (285)
                      -.+...++|..|+.++
T Consensus       357 ~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  357 LELNSKPSLVYLDVFG  372 (419)
T ss_pred             eeeccCcceEEEEecc
Confidence            3467888888888887

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.06  E-value=3.8e-06  Score=70.56  Aligned_cols=138  Identities=16%  Similarity=0.180  Sum_probs=97.0

Q ss_pred             CCCCceeEEEEEecCCcc-----cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCC
Q 043587           93 SLDEKVRHLMLIIGEGAI-----FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLT  167 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  167 (285)
                      +.+..+|.+....|....     +...+...+.|+.+.+..|.+.....  ......|..+++|++|||.     .|.+.
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~-----DNtft  226 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLR-----DNTFT  226 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh--HHHHHHHHhCCcceeeecc-----cchhh
Confidence            457788888888887665     44566667788888888887433222  2345668889999999998     77644


Q ss_pred             Cc----ccccccccCCCceEeccccccc-----ccchhhh-cCCCccEEecCCCCCcCc----CcccccccCCCceeecC
Q 043587          168 PE----IPRNIEKLVHLRYLSLSFQHIE-----KLPETLC-ELYNLETLDISGCFDLEE----LPKGIGKLVNMKHLLNS  233 (285)
Q Consensus       168 ~~----~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~-~l~~L~~L~l~~~~~~~~----lp~~l~~l~~L~~L~l~  233 (285)
                      ..    +...++.+++|+.|++++|.++     .+.+.+. ..++|++|.+.+|.+...    +...+...+.|+.|+++
T Consensus       227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn  306 (382)
T KOG1909|consen  227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN  306 (382)
T ss_pred             hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence            33    4456777888999999998866     2223332 468899999999874332    33355667889999999


Q ss_pred             CCCC
Q 043587          234 RTSS  237 (285)
Q Consensus       234 ~~~~  237 (285)
                      +|.+
T Consensus       307 gN~l  310 (382)
T KOG1909|consen  307 GNRL  310 (382)
T ss_pred             cccc
Confidence            9865

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.89  E-value=3.7e-05  Score=67.30  Aligned_cols=118  Identities=19%  Similarity=0.302  Sum_probs=71.9

Q ss_pred             chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccc-cccc
Q 043587          114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQ-HIEK  192 (285)
Q Consensus       114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~-~l~~  192 (285)
                      .+..+.+++.|++++|.      ...+ |.   --.+|+.|.++     +|.....+|..+  ..+|++|++++| .+..
T Consensus        47 r~~~~~~l~~L~Is~c~------L~sL-P~---LP~sLtsL~Ls-----nc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s  109 (426)
T PRK15386         47 QIEEARASGRLYIKDCD------IESL-PV---LPNELTEITIE-----NCNNLTTLPGSI--PEGLEKLTVCHCPEISG  109 (426)
T ss_pred             HHHHhcCCCEEEeCCCC------Cccc-CC---CCCCCcEEEcc-----CCCCcccCCchh--hhhhhheEccCcccccc
Confidence            34557888999998886      4443 21   12358888888     655456667554  357899999888 5777


Q ss_pred             cchhhhcCCCccEEecCCCC--CcCcCccccccc------------------CCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587          193 LPETLCELYNLETLDISGCF--DLEELPKGIGKL------------------VNMKHLLNSRTSSVRYMPVGIGRLTGLR  252 (285)
Q Consensus       193 lp~~i~~l~~L~~L~l~~~~--~~~~lp~~l~~l------------------~~L~~L~l~~~~~~~~~p~~~~~l~~L~  252 (285)
                      +|+.      |+.|++..+.  .++.+|.++..|                  ++|++|++++|... .+|..+.  .+|+
T Consensus       110 LP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk  180 (426)
T PRK15386        110 LPES------VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQ  180 (426)
T ss_pred             cccc------cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCc
Confidence            7754      4445554432  255666655433                  25777777777544 3443333  3566


Q ss_pred             ccccc
Q 043587          253 TLGEF  257 (285)
Q Consensus       253 ~L~l~  257 (285)
                      .|.++
T Consensus       181 ~L~ls  185 (426)
T PRK15386        181 SITLH  185 (426)
T ss_pred             EEEec
Confidence            66654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.88  E-value=2.5e-06  Score=62.51  Aligned_cols=56  Identities=23%  Similarity=0.328  Sum_probs=26.4

Q ss_pred             CCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCC
Q 043587          179 HLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRT  235 (285)
Q Consensus       179 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~  235 (285)
                      .+..|++++|.+..+|..+..++.|+.|+++.|. +...|.-+..|.+|-+|+..+|
T Consensus        78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             hhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCC
Confidence            4444444444444444444444444444444444 4444444444444444444444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.87  E-value=2.2e-05  Score=68.63  Aligned_cols=116  Identities=19%  Similarity=0.287  Sum_probs=78.0

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ..++++|.++.+.+..+|.   -..+|++|.+.++..     ... .|+.+  ..+|+.|+++     +|.....+|.. 
T Consensus        51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~n-----Lts-LP~~L--P~nLe~L~Ls-----~Cs~L~sLP~s-  113 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNN-----LTT-LPGSI--PEGLEKLTVC-----HCPEISGLPES-  113 (426)
T ss_pred             hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCC-----ccc-CCchh--hhhhhheEcc-----Ccccccccccc-
Confidence            4678899999887776662   234699999988652     222 23323  2579999999     77436666654 


Q ss_pred             cccCCCceEeccccc---ccccchhhhcC------------------CCccEEecCCCCCcCcCcccccccCCCceeecC
Q 043587          175 EKLVHLRYLSLSFQH---IEKLPETLCEL------------------YNLETLDISGCFDLEELPKGIGKLVNMKHLLNS  233 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~---l~~lp~~i~~l------------------~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~  233 (285)
                           |+.|++..+.   +..+|+++..|                  .+|++|++++|. ...+|..+-  .+|++|.++
T Consensus       114 -----Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~-~i~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        114 -----VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS-NIILPEKLP--ESLQSITLH  185 (426)
T ss_pred             -----cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCC-cccCccccc--ccCcEEEec
Confidence                 5666666554   55677666544                  379999999998 445565432  489999987


Q ss_pred             CC
Q 043587          234 RT  235 (285)
Q Consensus       234 ~~  235 (285)
                      .+
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            65

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.86  E-value=6.1e-07  Score=82.03  Aligned_cols=129  Identities=18%  Similarity=0.187  Sum_probs=102.2

Q ss_pred             CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      .+..+...+...|....+..++.-++.|+.|++++|+      ..++  ..+..++.|+.|||+     +|+ ...+|.-
T Consensus       162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk------~~~v--~~Lr~l~~LkhLDls-----yN~-L~~vp~l  227 (1096)
T KOG1859|consen  162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK------FTKV--DNLRRLPKLKHLDLS-----YNC-LRHVPQL  227 (1096)
T ss_pred             hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh------hhhh--HHHHhcccccccccc-----cch-hcccccc
Confidence            4667888888888887777888899999999999998      5453  258899999999999     888 6666632


Q ss_pred             ccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCC
Q 043587          174 IEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSV  238 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~  238 (285)
                      =..-.+|..|.+++|.++.+ .++.+|.+|+.||++.|- +....  .-++.|..|+.|.+.+|++.
T Consensus       228 ~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  228 SMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             chhhhhheeeeecccHHHhh-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            11123499999999999988 579999999999999986 44332  23567888999999999765

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.82  E-value=5.9e-06  Score=60.56  Aligned_cols=111  Identities=14%  Similarity=0.216  Sum_probs=86.0

Q ss_pred             ceeEEEEEecCCccc---ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           97 KVRHLMLIIGEGAIF---PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        97 ~l~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ....+.++.+++..+   +..+....+|...++++|.      .+++++..-..++.++.|+++     .|. +..+|..
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~------fk~fp~kft~kf~t~t~lNl~-----~ne-isdvPeE   95 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG------FKKFPKKFTIKFPTATTLNLA-----NNE-ISDVPEE   95 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch------hhhCCHHHhhccchhhhhhcc-----hhh-hhhchHH
Confidence            444556666655433   3344555678888999998      777666655667789999998     888 7788888


Q ss_pred             ccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCccc
Q 043587          174 IEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKG  220 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~  220 (285)
                      +..++.|+.|+++.|.+...|..+.+|.+|-.|+..++. ...+|-.
T Consensus        96 ~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d  141 (177)
T KOG4579|consen   96 LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD  141 (177)
T ss_pred             HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence            889999999999999999999988889999999998887 6667655

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=1.3e-05  Score=66.30  Aligned_cols=156  Identities=17%  Similarity=0.155  Sum_probs=81.6

Q ss_pred             ccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccc--ccc
Q 043587          117 RIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE--KLP  194 (285)
Q Consensus       117 ~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~--~lp  194 (285)
                      .++.++.+++.+|..+.|+-+    ...+.+++.|++|+++     .|++...+..---...+|++|-|.++.+.  ...
T Consensus        69 ~~~~v~elDL~~N~iSdWseI----~~ile~lP~l~~LNls-----~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~  139 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEI----GAILEQLPALTTLNLS-----CNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST  139 (418)
T ss_pred             HhhhhhhhhcccchhccHHHH----HHHHhcCccceEeecc-----CCcCCCccccCcccccceEEEEEcCCCCChhhhh
Confidence            456677777777763332222    2335667777777777     55533322111123556777766666533  344


Q ss_pred             hhhhcCCCccEEecCCCCCc---------CcC----------c------ccc----cccCCCceeecCCCCCCccc-CCC
Q 043587          195 ETLCELYNLETLDISGCFDL---------EEL----------P------KGI----GKLVNMKHLLNSRTSSVRYM-PVG  244 (285)
Q Consensus       195 ~~i~~l~~L~~L~l~~~~~~---------~~l----------p------~~l----~~l~~L~~L~l~~~~~~~~~-p~~  244 (285)
                      .....++.++.|.++.|...         +..          |      ..+    ..+|++..+.+..|++...- -.+
T Consensus       140 s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~  219 (418)
T KOG2982|consen  140 SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG  219 (418)
T ss_pred             hhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhccc
Confidence            44555666666666655210         000          0      000    02344445555555433211 123


Q ss_pred             CCCCCcCCcccccc----ccCCccccccCCcCCCceecccC
Q 043587          245 IGRLTGLRTLGEFT----KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       245 ~~~l~~L~~L~l~~----~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      ...++.+-.|.+..    +++.++.|.++++|+.|.+.+++
T Consensus       220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence            44455555566554    67778888888888887776654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.43  E-value=6.9e-05  Score=60.80  Aligned_cols=84  Identities=25%  Similarity=0.220  Sum_probs=39.3

Q ss_pred             ccccCCCceEecccc--ccc-ccchhhhcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCCcccC---CCC
Q 043587          174 IEKLVHLRYLSLSFQ--HIE-KLPETLCELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSVRYMP---VGI  245 (285)
Q Consensus       174 i~~l~~L~~L~l~~~--~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~p---~~~  245 (285)
                      +-.+++|++|.++.|  ++. .++....++++|++|++++|+ +..+.  ..+..+.+|..|++.+|..+...-   ..|
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf  139 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF  139 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence            334556666666666  222 333333344666666666665 33211  123345556666666654433110   123


Q ss_pred             CCCCcCCcccccc
Q 043587          246 GRLTGLRTLGEFT  258 (285)
Q Consensus       246 ~~l~~L~~L~l~~  258 (285)
                      .-+++|..|+-..
T Consensus       140 ~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  140 LLLPSLKYLDGCD  152 (260)
T ss_pred             HHhhhhccccccc
Confidence            4455555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.42  E-value=0.00016  Score=56.63  Aligned_cols=63  Identities=22%  Similarity=0.212  Sum_probs=27.6

Q ss_pred             ccccCCCceEecccccccccchhhh-cCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCC
Q 043587          174 IEKLVHLRYLSLSFQHIEKLPETLC-ELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSS  237 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~  237 (285)
                      +..++.|.+|.+.+|.|+.+.+.+. .+++|.+|.+.+|. +..+-  ..+..+|+|++|.+-+|+.
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCch
Confidence            3344445555555555554433333 23345555555544 32221  1233444555555544433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.35  E-value=0.00025  Score=55.51  Aligned_cols=100  Identities=19%  Similarity=0.235  Sum_probs=56.7

Q ss_pred             ccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc-ccCCCceEecccccccccch--
Q 043587          119 KRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE-KLVHLRYLSLSFQHIEKLPE--  195 (285)
Q Consensus       119 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~-~l~~L~~L~l~~~~l~~lp~--  195 (285)
                      .....+++..|.      .... . .|..++.|..|.++     .|. +..+...+. .+++|..|.+.+|++.++.+  
T Consensus        42 d~~d~iDLtdNd------l~~l-~-~lp~l~rL~tLll~-----nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~  107 (233)
T KOG1644|consen   42 DQFDAIDLTDND------LRKL-D-NLPHLPRLHTLLLN-----NNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLD  107 (233)
T ss_pred             cccceecccccc------hhhc-c-cCCCccccceEEec-----CCc-ceeeccchhhhccccceEEecCcchhhhhhcc
Confidence            345566666665      3331 2 25666677777776     666 333333333 35567777777777665432  


Q ss_pred             hhhcCCCccEEecCCCCCcCcCcc----cccccCCCceeecC
Q 043587          196 TLCELYNLETLDISGCFDLEELPK----GIGKLVNMKHLLNS  233 (285)
Q Consensus       196 ~i~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~l~  233 (285)
                      .+..++.|++|.+-+|. .+..+.    -+..+|+|+.||+.
T Consensus       108 pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  108 PLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             hhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehh
Confidence            34456677777776665 333221    24566777777765

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=1.4e-05  Score=65.45  Aligned_cols=63  Identities=24%  Similarity=0.259  Sum_probs=29.1

Q ss_pred             ccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcc--cccccCCCceeecCCCCCCcc
Q 043587          176 KLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPK--GIGKLVNMKHLLNSRTSSVRY  240 (285)
Q Consensus       176 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~  240 (285)
                      +++.|++|.|+-|.|+.+. .+..+++|+.|+|+.|. +..+.+  -+.++|+|+.|.+..|+..+.
T Consensus        39 kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGE  103 (388)
T ss_pred             hcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccc
Confidence            3444555555555544442 24444555555555544 333321  234455555555555544443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.00011  Score=60.25  Aligned_cols=102  Identities=23%  Similarity=0.239  Sum_probs=73.2

Q ss_pred             hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccch
Q 043587          116 RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE  195 (285)
Q Consensus       116 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~  195 (285)
                      .++.+.+.|+.-++.      ..+|  .....|+.|++|.|+     -|.|.. + +.+..+.+|+.|.|+.|.|..+-+
T Consensus        16 sdl~~vkKLNcwg~~------L~DI--sic~kMp~lEVLsLS-----vNkIss-L-~pl~rCtrLkElYLRkN~I~sldE   80 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCG------LDDI--SICEKMPLLEVLSLS-----VNKISS-L-APLQRCTRLKELYLRKNCIESLDE   80 (388)
T ss_pred             hHHHHhhhhcccCCC------ccHH--HHHHhcccceeEEee-----cccccc-c-hhHHHHHHHHHHHHHhcccccHHH
Confidence            456677777777776      4453  236789999999998     777443 3 347778889999999998886643


Q ss_pred             --hhhcCCCccEEecCCCCCcCcCcc-----cccccCCCceeec
Q 043587          196 --TLCELYNLETLDISGCFDLEELPK-----GIGKLVNMKHLLN  232 (285)
Q Consensus       196 --~i~~l~~L~~L~l~~~~~~~~lp~-----~l~~l~~L~~L~l  232 (285)
                        -+.++++|++|.|..|.-.+.-+.     -+..||+|+.||-
T Consensus        81 L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   81 LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence              456889999999988875555443     2456788888863

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.81  E-value=0.0006  Score=33.49  Aligned_cols=18  Identities=33%  Similarity=0.676  Sum_probs=9.4

Q ss_pred             CceEecccccccccchhh
Q 043587          180 LRYLSLSFQHIEKLPETL  197 (285)
Q Consensus       180 L~~L~l~~~~l~~lp~~i  197 (285)
                      |++|++++|.++.+|+++
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            455555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.0014  Score=54.50  Aligned_cols=36  Identities=11%  Similarity=0.010  Sum_probs=18.9

Q ss_pred             CCceeEEEEEecCCcc---cccchhccccccEEeecCCC
Q 043587           95 DEKVRHLMLIIGEGAI---FPVSTRRIKRMRSLLIDGGR  130 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~  130 (285)
                      ...++.+++.++.+..   +...+.+++.|++|+++.|.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~  108 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS  108 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence            3445555555555444   23344455666666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.60  E-value=0.0017  Score=53.36  Aligned_cols=136  Identities=15%  Similarity=0.080  Sum_probs=75.4

Q ss_pred             ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc-ccc-------------ccc
Q 043587          112 PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP-RNI-------------EKL  177 (285)
Q Consensus       112 ~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p-~~i-------------~~l  177 (285)
                      .+++.+|++|+..+++.|....  -....+.+.+++.+.|..|.++     +|. .|.+. .-|             ..-
T Consensus        85 l~aLlkcp~l~~v~LSDNAfg~--~~~e~L~d~is~~t~l~HL~l~-----NnG-lGp~aG~rigkal~~la~nKKaa~k  156 (388)
T COG5238          85 LKALLKCPRLQKVDLSDNAFGS--EFPEELGDLISSSTDLVHLKLN-----NNG-LGPIAGGRIGKALFHLAYNKKAADK  156 (388)
T ss_pred             HHHHhcCCcceeeeccccccCc--ccchHHHHHHhcCCCceeEEee-----cCC-CCccchhHHHHHHHHHHHHhhhccC
Confidence            3456677777777777776211  0112234446667777777777     554 22211 111             234


Q ss_pred             CCCceEecccccccccchh-----hhcCCCccEEecCCCCCcCcCcc--------cccccCCCceeecCCCCCCcc----
Q 043587          178 VHLRYLSLSFQHIEKLPET-----LCELYNLETLDISGCFDLEELPK--------GIGKLVNMKHLLNSRTSSVRY----  240 (285)
Q Consensus       178 ~~L~~L~l~~~~l~~lp~~-----i~~l~~L~~L~l~~~~~~~~lp~--------~l~~l~~L~~L~l~~~~~~~~----  240 (285)
                      +.|++.....|++...|..     +..-.+|+++.+..|. ++  |.        ++..+.+|+.|++.+|.++..    
T Consensus       157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-Ir--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~  233 (388)
T COG5238         157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG-IR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY  233 (388)
T ss_pred             CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC-cC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence            5677777777776655432     2223467777777765 22  33        233556788888887765432    


Q ss_pred             cCCCCCCCCcCCcccccc
Q 043587          241 MPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       241 ~p~~~~~l~~L~~L~l~~  258 (285)
                      +.......+.|++|.+..
T Consensus       234 La~al~~W~~lrEL~lnD  251 (388)
T COG5238         234 LADALCEWNLLRELRLND  251 (388)
T ss_pred             HHHHhcccchhhhccccc
Confidence            122334445567776655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.28  E-value=0.0022  Score=52.22  Aligned_cols=110  Identities=20%  Similarity=0.125  Sum_probs=75.6

Q ss_pred             ccccccccCCCceEecccccccccchhhhcCCCccEEecCCC--CCcCcCcccccccCCCceeecCCCCCCcccCCC---
Q 043587          170 IPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGC--FDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVG---  244 (285)
Q Consensus       170 ~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~--~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~---  244 (285)
                      +....-.+..|+.|++.+..++.+. .+..|++|+.|.++.|  .....++--...+|+|++|++++|++.-  ++.   
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRP  111 (260)
T ss_pred             cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccch
Confidence            3333445667788888888776553 4567899999999999  4455565555677999999999997652  333   


Q ss_pred             CCCCCcCCcccccc------ccCCccccccCCcCCCceecccCC
Q 043587          245 IGRLTGLRTLGEFT------KACRLESLKNLEHLQICGIRRLGY  282 (285)
Q Consensus       245 ~~~l~~L~~L~l~~------~~~~~~~l~~l~~L~~L~i~~~~~  282 (285)
                      ...+.+|..|+++.      .......+.-+++|..|+-..+.+
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence            45666777888777      222333456677888877666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.10  E-value=0.0094  Score=43.69  Aligned_cols=104  Identities=17%  Similarity=0.263  Sum_probs=42.6

Q ss_pred             chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccccc
Q 043587          114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL  193 (285)
Q Consensus       114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l  193 (285)
                      .|.++++|+.+.+...       ...+....|.++++|+.+.+.     .+ +...-...+..+..++++.+.. .+..+
T Consensus         7 ~F~~~~~l~~i~~~~~-------~~~I~~~~F~~~~~l~~i~~~-----~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i   72 (129)
T PF13306_consen    7 AFYNCSNLESITFPNT-------IKKIGENAFSNCTSLKSINFP-----NN-LTSIGDNAFSNCKSLESITFPN-NLKSI   72 (129)
T ss_dssp             TTTT-TT--EEEETST---------EE-TTTTTT-TT-SEEEES-----ST-TSCE-TTTTTT-TT-EEEEETS-TT-EE
T ss_pred             HHhCCCCCCEEEECCC-------eeEeChhhccccccccccccc-----cc-ccccceeeeecccccccccccc-ccccc
Confidence            4555666666666532       333444456666666666665     32 1222223455555666666644 44444


Q ss_pred             ch-hhhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCC
Q 043587          194 PE-TLCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSR  234 (285)
Q Consensus       194 p~-~i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~  234 (285)
                      +. .+...++|+.+.+..+  +..++. .+.+. +|+.+.+..
T Consensus        73 ~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   73 GDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             -TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            43 3334666666666543  333322 34444 566665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.96  E-value=0.00017  Score=57.77  Aligned_cols=91  Identities=19%  Similarity=0.149  Sum_probs=70.1

Q ss_pred             HHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccc
Q 043587          144 LFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGK  223 (285)
Q Consensus       144 ~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~  223 (285)
                      .+..++..++||++     .|+ .-.+...++.+..|..|+++.+.+..+|...+++..++.+++.+|. ....|.+.++
T Consensus        37 ei~~~kr~tvld~~-----s~r-~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k  109 (326)
T KOG0473|consen   37 EIASFKRVTVLDLS-----SNR-LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKK  109 (326)
T ss_pred             hhhccceeeeehhh-----hhH-HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccc
Confidence            35667778888888     666 4445566777778888888888888888888888888888888776 7788888888


Q ss_pred             cCCCceeecCCCCCCccc
Q 043587          224 LVNMKHLLNSRTSSVRYM  241 (285)
Q Consensus       224 l~~L~~L~l~~~~~~~~~  241 (285)
                      ++++++++.-.+.+...+
T Consensus       110 ~~~~k~~e~k~~~~~~~~  127 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFFRKL  127 (326)
T ss_pred             cCCcchhhhccCcchHHH
Confidence            888888888877655443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.86  E-value=0.0011  Score=57.44  Aligned_cols=183  Identities=16%  Similarity=0.106  Sum_probs=90.7

Q ss_pred             CCCceeEEEEEecCCcc---cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCc-
Q 043587           94 LDEKVRHLMLIIGEGAI---FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPE-  169 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-  169 (285)
                      ..+++.+|.+.+...-.   ....-..+++|+.|++..+..    ++...+...-.++++|.+|+++     +|.-+.. 
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~----iT~~~Lk~la~gC~kL~~lNlS-----wc~qi~~~  232 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS----ITDVSLKYLAEGCRKLKYLNLS-----WCPQISGN  232 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch----hHHHHHHHHHHhhhhHHHhhhc-----cCchhhcC
Confidence            45556666555543211   223334667777777777542    3444444445678888888888     4432211 


Q ss_pred             -ccccccccCCCceEeccccc---------------------------cccc--chhhhcCCCccEEecCCCCCcCcCcc
Q 043587          170 -IPRNIEKLVHLRYLSLSFQH---------------------------IEKL--PETLCELYNLETLDISGCFDLEELPK  219 (285)
Q Consensus       170 -~p~~i~~l~~L~~L~l~~~~---------------------------l~~l--p~~i~~l~~L~~L~l~~~~~~~~lp~  219 (285)
                       +-.-...+..++.+.++||.                           ++..  -..-.....||+|+.++|...+..+-
T Consensus       233 gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l  312 (483)
T KOG4341|consen  233 GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL  312 (483)
T ss_pred             cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH
Confidence             11111122223333222221                           1110  00011345677777777765444331


Q ss_pred             -cc-cccCCCceeecCCCCCCcccCC-CC-CCCCcCCcccccc-----ccCCccccccCCcCCCceecccCCCCC
Q 043587          220 -GI-GKLVNMKHLLNSRTSSVRYMPV-GI-GRLTGLRTLGEFT-----KACRLESLKNLEHLQICGIRRLGYVSD  285 (285)
Q Consensus       220 -~l-~~l~~L~~L~l~~~~~~~~~p~-~~-~~l~~L~~L~l~~-----~~~~~~~l~~l~~L~~L~i~~~~~~~~  285 (285)
                       .+ .+.++|+.|.+..|+..+.+-. .+ .++..|+.+++..     .......=.+.+.||+|.++.|+-++|
T Consensus       313 ~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD  387 (483)
T KOG4341|consen  313 WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD  387 (483)
T ss_pred             HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence             12 3557788888888765443221 12 3556677776665     111122224556677777776665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.84  E-value=0.0035  Score=30.72  Aligned_cols=19  Identities=42%  Similarity=0.658  Sum_probs=9.4

Q ss_pred             ccEEecCCCCCcCcCccccc
Q 043587          203 LETLDISGCFDLEELPKGIG  222 (285)
Q Consensus       203 L~~L~l~~~~~~~~lp~~l~  222 (285)
                      |++|++++|+ ++.+|++++
T Consensus         2 L~~Ldls~n~-l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNN-LTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSE-ESEEGTTTT
T ss_pred             ccEEECCCCc-CEeCChhhc
Confidence            4555555554 445554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.44  E-value=0.0095  Score=27.11  Aligned_cols=14  Identities=43%  Similarity=0.536  Sum_probs=4.8

Q ss_pred             CceEeccccccccc
Q 043587          180 LRYLSLSFQHIEKL  193 (285)
Q Consensus       180 L~~L~l~~~~l~~l  193 (285)
                      |+.|++++|+++++
T Consensus         3 L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLDLSNNRLTSL   16 (17)
T ss_dssp             -SEEEETSS--SSE
T ss_pred             cCEEECCCCCCCCC
Confidence            44444444444433

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.39  E-value=0.023  Score=41.57  Aligned_cols=105  Identities=10%  Similarity=0.217  Sum_probs=58.9

Q ss_pred             HHHHhcCCccceeeecccccccccCCCcc-cccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcc
Q 043587          142 EELFRELTSLRALDFCESYHSRSSLTPEI-PRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPK  219 (285)
Q Consensus       142 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~  219 (285)
                      ..+|.++.+|+.+.+.     . . ...+ ...+..+.+|+.+.+..+ +..++. .+.+..+|+.+.+.+ . ...++.
T Consensus         5 ~~~F~~~~~l~~i~~~-----~-~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~   74 (129)
T PF13306_consen    5 NNAFYNCSNLESITFP-----N-T-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGD   74 (129)
T ss_dssp             TTTTTT-TT--EEEET-----S-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-T
T ss_pred             HHHHhCCCCCCEEEEC-----C-C-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-cccccc
Confidence            3457788889999886     4 3 3344 355777888999999774 777765 455676899999976 2 444443


Q ss_pred             -cccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587          220 -GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       220 -~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  258 (285)
                       .+..+++|+.+.+..+ +...-+..+.++ .|+.+.+..
T Consensus        75 ~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   75 NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence             4566889999998665 432334556776 777776543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.07  E-value=0.01  Score=53.81  Aligned_cols=61  Identities=26%  Similarity=0.276  Sum_probs=27.4

Q ss_pred             cCCCceEeccccc-cccc-chhhh-cCCCccEEecCCCCCcCc--CcccccccCCCceeecCCCCC
Q 043587          177 LVHLRYLSLSFQH-IEKL-PETLC-ELYNLETLDISGCFDLEE--LPKGIGKLVNMKHLLNSRTSS  237 (285)
Q Consensus       177 l~~L~~L~l~~~~-l~~l-p~~i~-~l~~L~~L~l~~~~~~~~--lp~~l~~l~~L~~L~l~~~~~  237 (285)
                      +.+|+.|+++++. ++.. -..+. .+++|+.|.+.+|..++.  +-.....++.|++|+++.|..
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4555566666555 3311 11222 245566666555542111  111223445566666665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.68  E-value=0.014  Score=50.87  Aligned_cols=134  Identities=13%  Similarity=0.086  Sum_probs=64.3

Q ss_pred             hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc-ccccc-ccCCCceEeccccccc--
Q 043587          116 RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI-PRNIE-KLVHLRYLSLSFQHIE--  191 (285)
Q Consensus       116 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-p~~i~-~l~~L~~L~l~~~~l~--  191 (285)
                      ..+..|+.|..+++..    +........-.+..+|++|.++     +|+..+.. ...++ ++++|+.+++.++...  
T Consensus       291 ~~c~~lq~l~~s~~t~----~~d~~l~aLg~~~~~L~~l~l~-----~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d  361 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTD----ITDEVLWALGQHCHNLQVLELS-----GCQQFSDRGFTMLGRNCPHLERLDLEECGLITD  361 (483)
T ss_pred             hhhhHhhhhcccCCCC----CchHHHHHHhcCCCceEEEecc-----ccchhhhhhhhhhhcCChhhhhhcccccceehh
Confidence            4555666666655541    2333223323455667777666     55532221 11122 4556666666665522  


Q ss_pred             -ccchhhhcCCCccEEecCCCCCcCcC-----cccccccCCCceeecCCCCCCcc-cCCCCCCCCcCCcccccc
Q 043587          192 -KLPETLCELYNLETLDISGCFDLEEL-----PKGIGKLVNMKHLLNSRTSSVRY-MPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       192 -~lp~~i~~l~~L~~L~l~~~~~~~~l-----p~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~  258 (285)
                       .+-..-.+.+.||.|.++.|..++..     ...-..+..|..+.+++|+.... .-.....+++|+.+++++
T Consensus       362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID  435 (483)
T ss_pred             hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence             12222234566666666666543332     22223445566666666654331 223345555666655555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.52  E-value=0.051  Score=45.01  Aligned_cols=157  Identities=12%  Similarity=-0.012  Sum_probs=99.6

Q ss_pred             CCCceeEEEEEecCCcc-c----ccchhccccccEEeecCCCCCCCCchhhHHHHH---------HhcCCccceeeeccc
Q 043587           94 LDEKVRHLMLIIGEGAI-F----PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEEL---------FRELTSLRALDFCES  159 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~-~----~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~---------~~~~~~L~~L~L~~~  159 (285)
                      ..+.++.+.++.+.... .    ..-++.-+.|..|.+++|....  +.+.-...+         ...-+.|++....  
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp--~aG~rigkal~~la~nKKaa~kp~Le~vicg--  165 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP--IAGGRIGKALFHLAYNKKAADKPKLEVVICG--  165 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc--cchhHHHHHHHHHHHHhhhccCCCceEEEec--
Confidence            45788899999887654 2    3345666789999999997211  111111211         2345779999988  


Q ss_pred             ccccccCCCccc-----ccccccCCCceEeccccccccc------chhhhcCCCccEEecCCCCCcCc----Cccccccc
Q 043587          160 YHSRSSLTPEIP-----RNIEKLVHLRYLSLSFQHIEKL------PETLCELYNLETLDISGCFDLEE----LPKGIGKL  224 (285)
Q Consensus       160 ~~~~~~~~~~~p-----~~i~~l~~L~~L~l~~~~l~~l------p~~i~~l~~L~~L~l~~~~~~~~----lp~~l~~l  224 (285)
                         +|. ....|     ..+..-..|+.+.+..|.|..-      -..+..+++|++|++..|.+...    +...+..+
T Consensus       166 ---rNR-lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W  241 (388)
T COG5238         166 ---RNR-LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW  241 (388)
T ss_pred             ---cch-hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence               777 33322     2233345899999999997711      12345678999999999974332    22344566


Q ss_pred             CCCceeecCCCCCCcccC----CCC--CCCCcCCcccccc
Q 043587          225 VNMKHLLNSRTSSVRYMP----VGI--GRLTGLRTLGEFT  258 (285)
Q Consensus       225 ~~L~~L~l~~~~~~~~~p----~~~--~~l~~L~~L~l~~  258 (285)
                      +.|+.|.+.+|-+...-.    ..|  ...++|+.|.+.+
T Consensus       242 ~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Y  281 (388)
T COG5238         242 NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDY  281 (388)
T ss_pred             chhhhccccchhhccccHHHHHHHhhhhcCCCccccccch
Confidence            779999999995543211    112  2356778887776

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.71  E-value=0.058  Score=27.39  Aligned_cols=19  Identities=37%  Similarity=0.492  Sum_probs=11.1

Q ss_pred             CCCceEecccccccccchh
Q 043587          178 VHLRYLSLSFQHIEKLPET  196 (285)
Q Consensus       178 ~~L~~L~l~~~~l~~lp~~  196 (285)
                      .+|++|++++|.++.+|+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.71  E-value=0.058  Score=27.39  Aligned_cols=19  Identities=37%  Similarity=0.492  Sum_probs=11.1

Q ss_pred             CCCceEecccccccccchh
Q 043587          178 VHLRYLSLSFQHIEKLPET  196 (285)
Q Consensus       178 ~~L~~L~l~~~~l~~lp~~  196 (285)
                      .+|++|++++|.++.+|+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.39  E-value=0.026  Score=51.18  Aligned_cols=138  Identities=23%  Similarity=0.175  Sum_probs=83.2

Q ss_pred             hHHHHHHhcCCccceeeecccccccccCCCc--ccccccccCCCceEecccc-c-cccc----chhhhcCCCccEEecCC
Q 043587          139 EILEELFRELTSLRALDFCESYHSRSSLTPE--IPRNIEKLVHLRYLSLSFQ-H-IEKL----PETLCELYNLETLDISG  210 (285)
Q Consensus       139 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~p~~i~~l~~L~~L~l~~~-~-l~~l----p~~i~~l~~L~~L~l~~  210 (285)
                      .+........++|+.|.+.     ++.....  +-.....++.|+.|+++++ . +...    +.....+.+|+.|++++
T Consensus       178 ~~~~~l~~~~~~L~~l~l~-----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  252 (482)
T KOG1947|consen  178 KILLRLLSSCPLLKRLSLS-----GCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG  252 (482)
T ss_pred             HHHHHHHhhCchhhHhhhc-----ccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence            3334434567899999988     6654444  3345567889999999873 2 2211    12334568899999999


Q ss_pred             CCCcCcC-ccccc-ccCCCceeecCCCCC-Ccc-cCCCCCCCCcCCcccccc-----ccCCccccccCCcCCCceecccC
Q 043587          211 CFDLEEL-PKGIG-KLVNMKHLLNSRTSS-VRY-MPVGIGRLTGLRTLGEFT-----KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       211 ~~~~~~l-p~~l~-~l~~L~~L~l~~~~~-~~~-~p~~~~~l~~L~~L~l~~-----~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      +..++.. -..+. .+++|++|.+..|.. +.. +-.....+++|++|++++     .........++++|+.|.+..+.
T Consensus       253 ~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~  332 (482)
T KOG1947|consen  253 CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN  332 (482)
T ss_pred             hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence            8743322 22232 378899999887853 221 212345678899999887     11122234455666665554443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.94  E-value=0.021  Score=44.96  Aligned_cols=80  Identities=18%  Similarity=0.205  Sum_probs=54.1

Q ss_pred             CCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCc-cccc-ccCCCceeecCCCCCCcc-cCCCCCCCCcCCcc
Q 043587          179 HLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELP-KGIG-KLVNMKHLLNSRTSSVRY-MPVGIGRLTGLRTL  254 (285)
Q Consensus       179 ~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp-~~l~-~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L  254 (285)
                      .++.++-+++.|... -+.+..++.++.|.+.+|......- ..++ -.++|+.|++++|+..+. --..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            367777777776533 3567788899999999998665431 1232 346899999999865432 12346677778887


Q ss_pred             cccc
Q 043587          255 GEFT  258 (285)
Q Consensus       255 ~l~~  258 (285)
                      .+++
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7776

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.50  E-value=0.0087  Score=48.25  Aligned_cols=85  Identities=18%  Similarity=0.176  Sum_probs=73.6

Q ss_pred             ccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGL  251 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L  251 (285)
                      ..+.....-..||++.|++..+-..+..++.|+.|+++.+. +..+|..++++..++++++..|+.. ..|.+++.++.+
T Consensus        36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            34566778889999999988888888889999999999998 8999999999999999998887555 889999999999


Q ss_pred             Ccccccc
Q 043587          252 RTLGEFT  258 (285)
Q Consensus       252 ~~L~l~~  258 (285)
                      +.++.-.
T Consensus       114 k~~e~k~  120 (326)
T KOG0473|consen  114 KKNEQKK  120 (326)
T ss_pred             chhhhcc
Confidence            9887655

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=88.30  E-value=0.23  Score=25.20  Aligned_cols=17  Identities=12%  Similarity=0.149  Sum_probs=14.4

Q ss_pred             CCcCCCceecccCCCCC
Q 043587          269 LEHLQICGIRRLGYVSD  285 (285)
Q Consensus       269 l~~L~~L~i~~~~~~~~  285 (285)
                      +++|+.|++++|.+|.|
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            36789999999999876

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.05  E-value=0.43  Score=37.83  Aligned_cols=81  Identities=20%  Similarity=0.171  Sum_probs=39.6

Q ss_pred             ccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc-ccccc-ccCCCceEeccccc-cccc-c
Q 043587          119 KRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI-PRNIE-KLVHLRYLSLSFQH-IEKL-P  194 (285)
Q Consensus       119 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-p~~i~-~l~~L~~L~l~~~~-l~~l-p  194 (285)
                      ..++.++.++..     +... --+.+.+++.++.|.+.     .|...+.. -+-++ -.++|+.|++++|. |++- .
T Consensus       101 ~~IeaVDAsds~-----I~~e-Gle~L~~l~~i~~l~l~-----~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL  169 (221)
T KOG3864|consen  101 VKIEAVDASDSS-----IMYE-GLEHLRDLRSIKSLSLA-----NCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL  169 (221)
T ss_pred             ceEEEEecCCch-----HHHH-HHHHHhccchhhhheec-----cccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence            446666666665     2222 22334555556666665     44433321 11122 24556666666665 5522 2


Q ss_pred             hhhhcCCCccEEecCC
Q 043587          195 ETLCELYNLETLDISG  210 (285)
Q Consensus       195 ~~i~~l~~L~~L~l~~  210 (285)
                      ..+.++++|+.|.+++
T Consensus       170 ~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  170 ACLLKLKNLRRLHLYD  185 (221)
T ss_pred             HHHHHhhhhHHHHhcC
Confidence            3455566666665554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.21  E-value=0.52  Score=23.96  Aligned_cols=17  Identities=35%  Similarity=0.579  Sum_probs=10.5

Q ss_pred             CCceEecccccccccch
Q 043587          179 HLRYLSLSFQHIEKLPE  195 (285)
Q Consensus       179 ~L~~L~l~~~~l~~lp~  195 (285)
                      +|++|++++|+++++|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45666666666666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	6e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	7e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.5 bits (207), Expect = 1e-18
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 134 SSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL 193
             L         + L +L++L         + +   +P +I  L +L+ L +    +  L
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRL-----EWTGIR-SLPASIANLQNLKSLKIRNSPLSAL 221

Query: 194 PETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRT 253
              +  L  LE LD+ GC  L   P   G    +K L+    S++  +P+ I RLT L  
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

Query: 254 L 254
           L
Sbjct: 282 L 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 23/151 (15%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLE 204
              L+ L+ +         + L  E+P  +++   L  L+L+   +  LP ++  L  L 
Sbjct: 100 AFRLSHLQHMTI-----DAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153

Query: 205 TLDISGCFDLEELPKGIGKLV------NMKHL--LNSRTSSVRYMPVGIGRLTGLRTLGE 256
            L I  C +L ELP+ +           + +L  L    + +R +P  I  L  L++L  
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL-- 211

Query: 257 FTKACRLES-------LKNLEHLQICGIRRL 280
             +   L +       L  LE L + G   L
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 21/159 (13%)

Query: 141 LEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVH--LRYLSLSFQHIEKLPETLC 198
               +         +  +               +E         L L    + + P+   
Sbjct: 42  DRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAF 101

Query: 199 ELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL---- 254
            L +L+ + I     L ELP  + +   ++  L    + +R +P  I  L  LR L    
Sbjct: 102 RLSHLQHMTIDAA-GLMELPDTMQQFAGLET-LTLARNPLRALPASIASLNRLRELSIRA 159

Query: 255 -----------GEFTKACRLESLKNLEHLQI--CGIRRL 280
                           +   + L NL+ L++   GIR L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 148 LTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSF-QHIEKLPETLCELYNLETL 206
              L+ L         S+L   +P +I +L  L  L L    ++ +LP  + +L     +
Sbjct: 252 RAPLKRLIL----KDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 207 DISGCFDLEELPK 219
            +       +L +
Sbjct: 307 LVPPHL-QAQLDQ 318

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 76.4 bits (188), Expect = 6e-16
 Identities = 14/116 (12%), Positives = 35/116 (30%), Gaps = 27/116 (23%)

Query: 1   MSSLLLSYNDLPSKLKRC--YLSA-EEDEEM------------ETIGEEYFGILAPRSFF 45
             ++ +S   L   +K     LS  ++D ++                E+       +S  
Sbjct: 365 DEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLL 424

Query: 46  QEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEELDVTNSLDEKVRHL 101
                  + +  +  +HD+  DF    + ++   L             + +  R+ 
Sbjct: 425 F---CDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLH---------KKIITQFQRYH 468

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 73.5 bits (180), Expect = 7e-15
 Identities = 15/129 (11%), Positives = 41/129 (31%), Gaps = 30/129 (23%)

Query: 1   MSSLLLSYNDLPSKLKRCYL------------------------SAEEDEEMETIGEEYF 36
             +L      L  + +                             + E+E+++    +  
Sbjct: 375 AMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRL 434

Query: 37  GILAPRSFFQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECLSLEINGSEEL---DVTNS 93
             L+ R      +      ++  K+  ++H F + V + + ++  I+  E+       N+
Sbjct: 435 KRLSKRGALLSGK---RMPVLTFKIDHIIHMFLKHVVDAQTIANGISILEQRLLEIGNNN 491

Query: 94  LDEKVRHLM 102
           +    RH+ 
Sbjct: 492 VSVPERHIP 500

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 3e-11
 Identities = 23/127 (18%), Positives = 36/127 (28%), Gaps = 13/127 (10%)

Query: 139 EILEELFRELTSLRALDFCE---SYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE 195
           +   ELF   + +  +       +    +SL P    N +    L  + L F  +  L +
Sbjct: 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKP-KDGNYKNTYLLTTIDLRFNKLTSLSD 745

Query: 196 TL--CELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSV------RYMPVGIGR 247
                 L  L  +D+S        P        +K                R  P GI  
Sbjct: 746 DFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804

Query: 248 LTGLRTL 254
              L  L
Sbjct: 805 CPSLIQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 25/157 (15%)

Query: 132 DHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE 191
            + +     + +  + LT L+ + F     + S  T +      +  +  Y        E
Sbjct: 431 GNLTNRITFISKAIQRLTKLQIIYF-----ANSPFTYDNIAVDWEDANSDYAKQY----E 481

Query: 192 KLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHL---------LNSRTSSVRYMP 242
               +   L +L  +++  C ++ +LP  +  L  ++ L              +    + 
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541

Query: 243 VGIGRLTGLRTL-------GEFTKACRLESLKNLEHL 272
                   ++          EF  +  L+ +  L  L
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 15/159 (9%), Positives = 36/159 (22%), Gaps = 15/159 (9%)

Query: 122 RSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLR 181
             L  D        +     +        L   D  +   +R+     I ++    +   
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 182 YLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYM 241
            +      I  + + +  L  L+ +  +           +              +     
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYEN----E 483

Query: 242 PVGIGRLTGLRTL--------GEFTKACRLESLKNLEHL 272
            +    L  L  +         +      L  L  L+ L
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDF--LYDLPELQSL 520

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 11/102 (10%)

Query: 132 DHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE 191
            +++L         +++  L  LD        + +   +       V L  L L +  IE
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDC-----VHNKVR-HLE-AFGTNVKLTDLKLDYNQIE 608

Query: 192 KLPETLCE-LYNLETLDISGCFDLEELPK--GIGKLVNMKHL 230
           ++PE  C     +E L  S    L+ +P       +  M  +
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSV 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 3/71 (4%)

Query: 141 LEELFRELTSLRALDFCESYH-SRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCE 199
                   + L+A           + +  + P  I     L  L +    I K+ E L  
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP 827

Query: 200 LYNLETLDISG 210
              L  LDI+ 
Sbjct: 828 --QLYILDIAD 836

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 21/130 (16%)

Query: 140 ILEELFRELTSLRALDFCESYHSRSSLT-------PEIPRNIEKLVHLRYLSLSFQHIEK 192
             +ELF   + L +++        + LT        +   N +    L  + L F  + K
Sbjct: 448 FPKELFSTGSPLSSINL-----MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 193 LPETL--CELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRY------MPVG 244
           L +      L  L  +D+S      + P        +K          +        P G
Sbjct: 503 LSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 245 IGRLTGLRTL 254
           I     L  L
Sbjct: 562 ITLCPSLTQL 571

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 12/148 (8%), Positives = 38/148 (25%), Gaps = 15/148 (10%)

Query: 133 HSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK 192
              +     +            D  +   +       I ++    +    +     +I  
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 193 LPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR 252
           + + +  L  L    +     + E      +  N ++    +T       +    L  L 
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLT 252

Query: 253 TL--------GEFTKACRLESLKNLEHL 272
            +         +      L++L  ++ +
Sbjct: 253 DVEVYNCPNLTKLPTF--LKALPEMQLI 278

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 14/102 (13%)

Query: 137 NGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE--KLVHLRYLSLSFQHIEKLP 194
           + +   E F+    L ++D        + LT ++  +     L +L  + LS+    K P
Sbjct: 476 SLKDENENFKNTYLLTSIDL-----RFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFP 529

Query: 195 ETLCELYNLETLDISGCFDL------EELPKGIGKLVNMKHL 230
                   L+   I    D        E P+GI    ++  L
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 14/124 (11%), Positives = 42/124 (33%), Gaps = 14/124 (11%)

Query: 136 LNGEILEELFRELTSLRALDFCESYHSRSSL-TPEIPRNIEKLVHLRYLSLSFQHIEKLP 194
            + + L +       ++ +         ++L T  +  +++K+  L  L   +  +E   
Sbjct: 293 DDWQALADAPV-GEKIQIIYI-----GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346

Query: 195 ETLCELYNLETLDISGCFDLEELPKGI-GKLVNMKHLL---NSRTSSVRYMPVGIGRLTG 250
                   L +L+++    + E+P    G    +++L    N               ++ 
Sbjct: 347 PAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPN--IFDAKSVSV 403

Query: 251 LRTL 254
           +  +
Sbjct: 404 MSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 4/94 (4%)

Query: 139 EILEELFRELTSLRALDFCES-YHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETL 197
           +   +     ++L+            +    E P  I     L  L +    I K+ E +
Sbjct: 527 KFPTQPL-NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585

Query: 198 CELYNLETLDISGCFDLEELPKGIGKLVNMKHLL 231
               N+  LDI    ++      +   +     +
Sbjct: 586 TP--NISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 12/132 (9%), Positives = 37/132 (28%), Gaps = 24/132 (18%)

Query: 137 NGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE- 195
             +  +  +  L  L  ++             ++P  ++ L  ++ ++++        + 
Sbjct: 237 QYKTEDLKWDNLKDLTDVEV-----YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291

Query: 196 --------TLCELYNLETLDISGCFDLEEL--PKGIGKLVNMKHLL---NSRTSSVRYMP 242
                          ++ + I    +L+       + K+  +  L    N          
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGK----L 346

Query: 243 VGIGRLTGLRTL 254
              G    L +L
Sbjct: 347 PAFGSEIKLASL 358

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 12/142 (8%), Positives = 32/142 (22%), Gaps = 21/142 (14%)

Query: 147 ELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSF-----QHIEKLPETLCELY 201
               +  L            +  +P  I +L  L  L+L             P+ +    
Sbjct: 79  SNGRVTGLSL-----EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM 133

Query: 202 NLETLDISGCFDLEELPKGIGKLV--NMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTK 259
           + E          +       +    ++     +     + +            +G+ + 
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS- 192

Query: 260 ACRLES-------LKNLEHLQI 274
              +         L  L    +
Sbjct: 193 -NNITFVSKAVMRLTKLRQFYM 213

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 31/140 (22%)

Query: 145 FRELTSLRALDFCESY----HSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLP-ETLCE 199
            + ++ + A+DF  SY             +     K +++  ++LS   I K P E    
Sbjct: 398 AKSVSVMSAIDF--SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455

Query: 200 LYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL----- 254
              L ++++ G   L E+PK   K                           L ++     
Sbjct: 456 GSPLSSINLMGNM-LTEIPKNSLKDE----------------NENFKNTYLLTSIDLRFN 498

Query: 255 --GEFTKACRLESLKNLEHL 272
              + +   R  +L  L  +
Sbjct: 499 KLTKLSDDFRATTLPYLVGI 518

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 28/153 (18%)

Query: 135 SLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE-KL 193
              G+I   L    + L +L       S + L+  IP ++  L  LR L L    +E ++
Sbjct: 405 GFTGKIPPTLS-NCSELVSLHL-----SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 194 PETLCELYNLETLDISGCFDLE-ELPKGIGKLVNMKHLL---NSRTSSVRYMPVGIGRLT 249
           P+ L  +  LETL +     L  E+P G+    N+  +    N  T  +   P  IGRL 
Sbjct: 459 PQELMYVKTLETLILDFND-LTGEIPSGLSNCTNLNWISLSNNRLTGEI---PKWIGRLE 514

Query: 250 GLRTL--------GEFTKACRLESLKNLEHLQI 274
            L  L        G          L +   L  
Sbjct: 515 NLAILKLSNNSFSGNIP-----AELGDCRSLIW 542

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 135 SLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE-KL 193
              GEI + L     +L  LD      S +     +P        L  L+LS  +   +L
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDL-----SGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334

Query: 194 P-ETLCELYNLETLDISGCFDLE-ELPKGIGKL 224
           P +TL ++  L+ LD+S       ELP+ +  L
Sbjct: 335 PMDTLLKMRGLKVLDLSFNE-FSGELPESLTNL 366

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 28/154 (18%)

Query: 135 SLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE-KL 193
           + +  I      + ++L+ LD      S + L+ +  R I     L+ L++S       +
Sbjct: 211 NFSTGIPF--LGDCSALQHLDI-----SGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 194 PETLCELYNLETLDISGCFDLE-ELPKGI-GKLVNMKHLL---NSRTSSVRYMPVGIGRL 248
           P    +  +L+ L ++       E+P  + G    +  L    N    +V   P   G  
Sbjct: 264 PPLPLK--SLQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHFYGAV---PPFFGSC 317

Query: 249 TGLRTL--------GEFTKACRLESLKNLEHLQI 274
           + L +L        GE      L  ++ L+ L +
Sbjct: 318 SLLESLALSSNNFSGELPMDT-LLKMRGLKVLDL 350

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 32/156 (20%)

Query: 135 SLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE---KLVHLRYLSLSFQHIE 191
           +L+         +L SL  LD      S +S++               L++L++S   I 
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDL-----SANSISGANVVGWVLSDGCGELKHLAISGNKIS 191

Query: 192 -KLPETLCELYNLETLDISGCFDLE-ELPKGIGKLVNMKHLL---NSRTSSVRYMPVGIG 246
             +   +    NLE LD+S   +    +P  +G    ++HL    N  +         I 
Sbjct: 192 GDVD--VSRCVNLEFLDVSSN-NFSTGIP-FLGDCSALQHLDISGNKLSGDF---SRAIS 244

Query: 247 RLTGLRTL--------GEFTKACRLESLKNLEHLQI 274
             T L+ L        G          LK+L++L +
Sbjct: 245 TCTELKLLNISSNQFVGPIPP----LPLKSLQYLSL 276

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 17/102 (16%)

Query: 135 SLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE-KL 193
              G      F    S+  LD      S + L+  IP+ I  + +L  L+L    I   +
Sbjct: 619 VYGGHTSPT-FDNNGSMMFLDM-----SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672

Query: 194 PETLCELYNLETLDIS-----GCFDLEELPKGIGKLVNMKHL 230
           P+ + +L  L  LD+S     G      +P+ +  L  +  +
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDG-----RIPQAMSALTMLTEI 709

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 33/152 (21%), Positives = 47/152 (30%), Gaps = 26/152 (17%)

Query: 135 SLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE-KL 193
            L GEI   L    T+L  +       S + LT EIP+ I +L +L  L LS       +
Sbjct: 477 DLTGEIPSGLSN-CTNLNWISL-----SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 194 PETLCELYNLETLDI-----SGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRL 248
           P  L +  +L  LD+     +G      +P  + K                   V I   
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNG-----TIPAAMFKQSGKIAANFIAGK----RYVYIKND 581

Query: 249 TGLRTLGEFTKACRL-----ESLKNLEHLQIC 275
              +                E L  L     C
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.8 bits (133), Expect = 5e-09
 Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 21/151 (13%)

Query: 110 IFPVSTRRIKRMRSLLIDGGRSDHSSLNGE--ILEELFRELTSLRALDFCESYHSRSSLT 167
           +   +  +  R+ +L + G      +L     I   L   L  L  L         ++L 
Sbjct: 41  VLCDTDTQTYRVNNLDLSG-----LNLPKPYPIPSSLAN-LPYLNFLYI----GGINNLV 90

Query: 168 PEIPRNIEKLVHLRYLSLSFQHIE-KLPETLCELYNLETLDISGCFDLE-ELPKGIGKLV 225
             IP  I KL  L YL ++  ++   +P+ L ++  L TLD S    L   LP  I  L 
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLP 149

Query: 226 NMKHLL---NSRTSSVRYMPVGIGRLTGLRT 253
           N+  +    N  + ++   P   G  + L T
Sbjct: 150 NLVGITFDGNRISGAI---PDSYGSFSKLFT 177

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 19/104 (18%)

Query: 133 HSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE- 191
            + L G+I         +L  +D      SR+ L  +         + + + L+   +  
Sbjct: 183 RNRLTGKIPPTFAN--LNLAFVDL-----SRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 192 KLPETLCELYNLETLD-----ISGCFDLEELPKGIGKLVNMKHL 230
            L + +    NL  LD     I G      LP+G+ +L  +  L
Sbjct: 236 DLGK-VGLSKNLNGLDLRNNRIYG-----TLPQGLTQLKFLHSL 273

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 36/158 (22%), Positives = 51/158 (32%), Gaps = 34/158 (21%)

Query: 135 SLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLP 194
            +    L  L      LR L+      S + LT  +P     L+ L   S    H+  LP
Sbjct: 67  VIPDNNLTSLPALPPELRTLEV-----SGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP 120

Query: 195 ETLCELY--------------NLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRY 240
             LC+L+               L+ L +S    L  LP    +L  +    N  TS    
Sbjct: 121 SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTS---- 175

Query: 241 MPVGIGRLTGLRTLGEFTKACRLESL----KNLEHLQI 274
           +P+    L  L          +L SL      L  L  
Sbjct: 176 LPMLPSGLQELSVSD-----NQLASLPTLPSELYKLWA 208

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.1 bits (117), Expect = 8e-07
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 19/143 (13%)

Query: 141 LEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCEL 200
           L  L    + L+ L       S + LT  +P     L+ L   S+    + +LPE+L  L
Sbjct: 233 LTSLPVLPSELKELMV-----SGNRLT-SLPMLPSGLLSL---SVYRNQLTRLPESLIHL 283

Query: 201 YNLETLDISG----------CFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTG 250
            +  T+++ G            ++   P   G ++       S     R + +       
Sbjct: 284 SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLV 343

Query: 251 LRTLGEFTKACRLESLKNLEHLQ 273
               GE   A R       ++  
Sbjct: 344 PAREGEPAPADRWHMFGQEDNAD 366

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 26/145 (17%)

Query: 137 NGEILEELFR-ELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE 195
              +++++          L+        S LT  +P  +    H+  L +   ++  LP 
Sbjct: 27  RAAVVQKMRACLNNGNAVLNV-----GESGLT-TLPDCL--PAHITTLVIPDNNLTSLPA 78

Query: 196 TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLG 255
                  L TL++SG   L  LP     L+ +    N  T     +P     L  L   G
Sbjct: 79  ---LPPELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLTH----LPALPSGLCKLWIFG 130

Query: 256 EFTKACRLESL----KNLEHLQICG 276
                 +L SL      L+ L +  
Sbjct: 131 -----NQLTSLPVLPPGLQELSVSD 150

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 35/136 (25%), Positives = 44/136 (32%), Gaps = 26/136 (19%)

Query: 141 LEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCEL 200
           L  L    + L  L         + LT  +P        L+ LS+S   +  LP    EL
Sbjct: 153 LASLPALPSELCKLWA-----YNNQLT-SLPMLPS---GLQELSVSDNQLASLPTLPSEL 203

Query: 201 YNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKA 260
           Y L   +      L  LP     L  +    N  TS    +PV    L  L   G     
Sbjct: 204 YKLWAYNNR----LTSLPALPSGLKELIVSGNRLTS----LPVLPSELKELMVSG----- 250

Query: 261 CRLESL----KNLEHL 272
            RL SL      L  L
Sbjct: 251 NRLTSLPMLPSGLLSL 266

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 7e-08
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 13/135 (9%)

Query: 147 ELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETL 206
           ++ SL  +    +  + + LT      IE   +++ L+++  H       +  L NLE L
Sbjct: 42  QMNSLTYITL--ANINVTDLTG-----IEYAHNIKDLTINNIHATNY-NPISGLSNLERL 93

Query: 207 DISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL-----GEFTKAC 261
            I G     +    +  L ++  L  S ++    +   I  L  + ++     G  T   
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM 153

Query: 262 RLESLKNLEHLQICG 276
            L++L  L+ L I  
Sbjct: 154 PLKTLPELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 19/135 (14%)

Query: 148 LTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHI-EKLPETLCELYNLETL 206
             +++ L    +    ++  P     I  L +L  L +  + +       L  L +L  L
Sbjct: 65  AHNIKDLTI--NNIHATNYNP-----ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 207 DISGCFDLEELPKGIGKLVNMKHL---LNSRTSSVRYMPVGIGRLTGLRTLG----EFTK 259
           DIS     + +   I  L  +  +    N   + +      +  L  L++L         
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGVHD 173

Query: 260 ACRLESLKNLEHLQI 274
              +E    L  L  
Sbjct: 174 YRGIEDFPKLNQLYA 188

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 9/101 (8%)

Query: 133 HSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK 192
           HS+L       +F  L +L  LD      S +            L  L  L ++    ++
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDI-----SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 193 --LPETLCELYNLETLDISGCFDLEELPKG-IGKLVNMKHL 230
             LP+   EL NL  LD+S C  LE+L       L +++ L
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVL 499

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 31/151 (20%), Positives = 47/151 (31%), Gaps = 16/151 (10%)

Query: 132 DHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE 191
             +S  G        +L SL  LD      +  S      ++      L+YL LSF  + 
Sbjct: 331 TFTSNKGGNAFS-EVDLPSLEFLDL---SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 192 KLPETLCELYNLETLDISGCFDLEELPKGI-GKLVNMKHLL--NSRTSSVRYMPVGIGRL 248
            +      L  LE LD       +     +   L N+ +L   ++ T            L
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGL 444

Query: 249 TGLRTL-------GEFTKACRLESLKNLEHL 272
           + L  L        E         L+NL  L
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 132 DHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE 191
             +S     L ++F EL +L  LD      S+  L    P     L  L+ L++S  +  
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDL-----SQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 192 KL-PETLCELYNLETLDISG 210
            L       L +L+ LD S 
Sbjct: 508 SLDTFPYKCLNSLQVLDYSL 527

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 19/139 (13%)

Query: 149 TSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLD 207
            S + LD      S + L      +      L+ L LS   I+ +       L +L TL 
Sbjct: 28  FSTKNLDL-----SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 208 ISGCFDLEELPKGIGKLVNMKHLL---NSRTSSVRYMPVGIGRLTGLRTL-------GEF 257
           ++G             L +++ L+    +  S        IG L  L+ L         F
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE---NFPIGHLKTLKELNVAHNLIQSF 139

Query: 258 TKACRLESLKNLEHLQICG 276
                  +L NLEHL +  
Sbjct: 140 KLPEYFSNLTNLEHLDLSS 158

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 25/128 (19%), Positives = 40/128 (31%), Gaps = 13/128 (10%)

Query: 135 SLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRY----LSLSFQHI 190
            +    L E F  LT+L  LD      S + +      ++  L  +      L LS   +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDL-----SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 191 EKLPETLCELYNLETLDISGCFDLEELPKG-IGKLVNMKHL---LNSRTSSVRYMPVGIG 246
             +     +   L  L +   FD   + K  I  L  ++     L    +          
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 247 RLTGLRTL 254
            L GL  L
Sbjct: 250 ALEGLCNL 257

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 10/102 (9%)

Query: 133 HSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLS---FQH 189
            + +  E+  + +R L ++  +       S +        +   +  L+ L L     ++
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYL-----SYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 190 IEKLPETLCELYNLETLDISGCFDLEELPKG-IGKLVNMKHL 230
           ++  P     L NL  LD+S   ++  +    +  L  ++ L
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEIL 509

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 140 ILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL-PETLC 198
           +  EL ++L  L+ L+        + L+    +      +L  L L    I+K+      
Sbjct: 64  LEPELCQKLPMLKVLNL-----QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 199 ELYNLETLDISGCFDLEELPKG-IGKLVNMKHL 230
           +  NL TLD+S    L     G   +L N++ L
Sbjct: 119 KQKNLITLDLSHNG-LSSTKLGTQVQLENLQEL 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL-PETL 197
           ++ ++ F   T+L  L         +S+         K  +L  L LS   +      T 
Sbjct: 87  QLSDKTFAFCTNLTELHL-----MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 198 CELYNLETLDISGCFDLEELPKGIGKLVNMKHL 230
            +L NL+ L +S    ++ L      +     L
Sbjct: 142 VQLENLQELLLSNN-KIQALKSEELDIFANSSL 173

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TL 197
            +    F   + L +LD        ++++   P   +KL  L+ L+L    + +L + T 
Sbjct: 39  RLPAANFTRYSQLTSLDV-----GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93

Query: 198 CELYNLETLDISGCFDLEELPKG-IGKLVNMKHL 230
               NL  L +     ++++      K  N+  L
Sbjct: 94  AFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITL 126

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 19/148 (12%)

Query: 132 DHSSLNGEILEELFRE--LTSLRALDFCESYHSRSSLTPEIPRNIE--KLVHLRYLSLSF 187
           ++  L   + E+L  E   TS+R L       S S L+          K  +L  L LS+
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSL-----SNSQLSTTSNTTFLGLKWTNLTMLDLSY 257

Query: 188 QHIEKL-PETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIG 246
            ++  +  ++   L  LE   +            +  L N+++L   R+ + + +     
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS---- 313

Query: 247 RLTGLRTLGEFTKACRLESLKNLEHLQI 274
            L  L  + +F+     + LK LEHL +
Sbjct: 314 -LASLPKIDDFS----FQWLKCLEHLNM 336

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 18/135 (13%)

Query: 148 LTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL-PETLCELYNLETL 206
            T++  L+      + + L      N  +   L  L + F  I KL PE   +L  L+ L
Sbjct: 24  PTNITVLNL-----THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78

Query: 207 DISGCFDLEELPKG-IGKLVNMKHLL--NSRTSSVRYMPVGIGRLTGLRTLG------EF 257
           ++    +L +L         N+  L   ++    ++       +   L TL         
Sbjct: 79  NLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSS 135

Query: 258 TKACRLESLKNLEHL 272
           TK      L+NL+ L
Sbjct: 136 TKLGTQVQLENLQEL 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 13/123 (10%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE--- 195
           +I    F +  +L  LD      S + L+        +L +L+ L LS   I+ L     
Sbjct: 111 KIKNNPFVKQKNLITLDL-----SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 196 TLCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLL---NSRTSSVRYMPVGIGRLTGL 251
            +    +L+ L++S    ++E   G    +  +  L         S+          T +
Sbjct: 166 DIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224

Query: 252 RTL 254
           R L
Sbjct: 225 RNL 227

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLC 198
           EI  E+F++L  L+ +D        ++L           V L+ L+L    I  + + + 
Sbjct: 550 EIPVEVFKDLFELKIIDL-----GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

Query: 199 E--LYNLETLDISG 210
                NL  LD+  
Sbjct: 605 GPAFRNLTELDMRF 618

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 5e-07
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 19/104 (18%)

Query: 173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLN 232
           ++E+L+ + +L LS   +  LP  L  L  LE L  S    LE +  G+  L  ++ LL 
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLL 515

Query: 233 SRTSSVRYMPVGIGRLTGLRTLGEFTKACRLESLKNLEHLQICG 276
                         RL     +        L S   L  L + G
Sbjct: 516 CNN-----------RLQQSAAIQP------LVSCPRLVLLNLQG 542

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 11/132 (8%)

Query: 148 LTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLD 207
              L+ LD      S + L   +    +    + ++SL    +  + + L    NLE  D
Sbjct: 190 FAKLKTLDL-----SSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243

Query: 208 ISGC-FDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKAC----R 262
           + G  F    L     K   ++ +       +         +  L   G +         
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 263 LESLKNLEHLQI 274
            + L  L H   
Sbjct: 304 ADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 14/118 (11%), Positives = 36/118 (30%), Gaps = 11/118 (9%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTP-EIPRNIEKLVHLRYLSLSFQHIEKLPETL 197
            + +      + ++ LD        + +              L +L+L +  I  +   +
Sbjct: 134 MLRDLDEGCRSRVQYLDL-----KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 198 CELYNLETLDISGCFDLEELPKGIGKLVNMKHL-LNSRTSSVRYMPVGIGRLTGLRTL 254
                L+TLD+S    L  +         +  + L +  + +  +   +     L   
Sbjct: 189 V-FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRN--NKLVLIEKALRFSQNLEHF 242

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 141 LEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLP-ETLCE 199
           + E+ +     +         + SSL   +    +   +++ L LS   + ++    L  
Sbjct: 2   IHEIKQNGNRYKIEKV-----TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

Query: 200 LYNLETLDISGCFDLEELPKGIGKLVNMKHL 230
              LE L++S    L E    +  L  ++ L
Sbjct: 57  FTKLELLNLSSN-VLYETL-DLESLSTLRTL 85

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLC 198
           + L  L +   +++ LD      S + L+     ++     L  L+LS   + +  + L 
Sbjct: 24  QALASLRQSAWNVKELDL-----SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LE 77

Query: 199 ELYNLETLDISGCFDLEELPKG 220
            L  L TLD++    ++EL  G
Sbjct: 78  SLSTLRTLDLNNN-YVQELLVG 98

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 17/154 (11%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLC 198
            +   +F +LT L  L    +  S      +          L+YL LSF  +  +     
Sbjct: 42  SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG---TTSLKYLDLSFNGVITMSSNFL 98

Query: 199 ELYNLETLDISGCFDLEELPKG--IGKLVNMKHLLNSRTSSVRYMPVGI-GRLTGLRTLG 255
            L  LE LD     +L+++ +      L N+ +L  S T   R    GI   L+ L  L 
Sbjct: 99  GLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLK 156

Query: 256 -------EFTKACRLESLKNLEHLQI--CGIRRL 280
                  E         L+NL  L +  C + +L
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 16/117 (13%)

Query: 141 LEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCEL 200
           L  L      L  ++        + LT  +P        L  LS+    +  LPE     
Sbjct: 132 LTMLPELPALLEYINA-----DNNQLT-MLPELPT---SLEVLSVRNNQLTFLPE---LP 179

Query: 201 YNLETLDISGCFDLEELPKGIGKLVNMKHL---LNSRTSSVRYMPVGIGRLTGLRTL 254
            +LE LD+S    LE LP    +  + +        R + + ++P  I  L    T+
Sbjct: 180 ESLEALDVSTNL-LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTI 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 18/107 (16%), Positives = 27/107 (25%), Gaps = 3/107 (2%)

Query: 141 LEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCEL 200
           L  L     SL ALD   S +   SL     RN        +       I  +PE +  L
Sbjct: 172 LTFLPELPESLEALDV--STNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL 229

Query: 201 YNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGR 247
               T+ +     L    +        +   +               
Sbjct: 230 DPTCTIILEDN-PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 22/111 (19%)

Query: 130 RSDHSSLNGEILEELFRE--LTSLRALDFCESYHSRSSLTPEIPRNIEKLV--------- 178
           +      N      L +E  +     L    +  + SSL   +P  I  L          
Sbjct: 38  KQALPGENRNEAVSLLKECLINQFSELQL--NRLNLSSLPDNLPPQITVLEITQNALISL 95

Query: 179 -----HLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKL 224
                 L YL      +  LPE      +L+ LD+     L  LP+    L
Sbjct: 96  PELPASLEYLDACDNRLSTLPELPA---SLKHLDVDNN-QLTMLPELPALL 142

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 9/92 (9%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLC 198
           +I+   F ++  L  L       S + L   +    + +  L+ L LS  H+  +     
Sbjct: 262 KIMYHPFVKMQRLERLYI-----SNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQP 315

Query: 199 ELYNLETLDISGCFDLEELPKGIGKLVNMKHL 230
           +   LE L +     +  L   +     +K+L
Sbjct: 316 QFDRLENLYLDHN-SIVTLK--LSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 10/95 (10%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIEKLPE-T 196
           ++   L      +  L+      +   +  EI          ++ L + F  I  LP   
Sbjct: 59  KLPAALLDSFRQVELLNL-----NDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112

Query: 197 LCELYNLETLDISGCFDLEELPKGI-GKLVNMKHL 230
              +  L  L +    DL  LP+GI      +  L
Sbjct: 113 FQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL 146

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 11/94 (11%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIEKLP-ET 196
            +   +F+ +  L  L        R+ L+  +PR I      L  LS+S  ++E++  +T
Sbjct: 107 YLPPHVFQNVPLLTVLVL-----ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 197 LCELYNLETLDISGCFDLEELPKGIGKLVNMKHL 230
                +L+ L +S    L  +   +  + ++ H 
Sbjct: 161 FQATTSLQNLQLSSN-RLTHVD--LSLIPSLFHA 191

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 49/337 (14%), Positives = 90/337 (26%), Gaps = 109/337 (32%)

Query: 6   LSYNDLPSKLKRCYLSAEEDEEMETIGEE-----YFGIL--APRSFFQEF-----EKSYD 53
               D+    K      E D  + +          F  L        Q+F       +Y 
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92

Query: 54  ---NRI--------------IKC--KMHDMVHDFAQ-FVSENECLSLEINGSEELDVTNS 93
              + I              I+   ++++    FA+  VS  +          EL    +
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 94  L-------------------DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHS 134
           +                     KV+  M    +  IF ++ +      ++L         
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKM----DFKIFWLNLKNCNSPETVL--------- 199

Query: 135 SLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKL-VHLRYLSLSFQHIEKL 193
               E+L++L  ++          ++ SRS  +  I   I  +   LR L    +  +  
Sbjct: 200 ----EMLQKLLYQIDP--------NWTSRSDHSSNIKLRIHSIQAELRRL---LKS-KPY 243

Query: 194 PETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSV--------RYMPVGI 245
              L  L N++       F+L           + K LL +R   V               
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNL-----------SCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 246 GRLTGL---RTLGEFTKA--CRLESLKNLEHLQICGI 277
                L          K   CR + L      ++   
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPR----EVLTT 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 19/136 (13%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLE 204
            + LT+LR L       +  +++ +I   +  L  +  L+L   H       L  +  L 
Sbjct: 106 LQNLTNLRELYL-----NEDNIS-DIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLN 158

Query: 205 TLDISGCFDLEELPKGIGKLVNMKHL-LNS-RTSSVRYMPVGIGRLTGLRTLG----EFT 258
            L ++    ++++   I  L ++  L LN  +   +      +  LT L        + T
Sbjct: 159 YLTVTES-KVKDVT-PIANLTDLYSLSLNYNQIEDIS----PLASLTSLHYFTAYVNQIT 212

Query: 259 KACRLESLKNLEHLQI 274
               + ++  L  L+I
Sbjct: 213 DITPVANMTRLNSLKI 228

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 15/134 (11%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLE 204
              L  L  L         + +T      ++ L +LR L L+  +I  +   L  L  + 
Sbjct: 84  LSNLVKLTNLYI-----GTNKIT--DISALQNLTNLRELYLNEDNISDISP-LANLTKMY 135

Query: 205 TLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLG----EFTKA 260
           +L++            +  +  + +L  + +  V+ +   I  LT L +L     +    
Sbjct: 136 SLNLGANH-NLSDLSPLSNMTGLNYLTVTES-KVKDVT-PIANLTDLYSLSLNYNQIEDI 192

Query: 261 CRLESLKNLEHLQI 274
             L SL +L +   
Sbjct: 193 SPLASLTSLHYFTA 206

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 20/138 (14%), Positives = 54/138 (39%), Gaps = 19/138 (13%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLE 204
              LT + +L+        +         +  +  L YL+++   ++ +   +  L +L 
Sbjct: 128 LANLTKMYSLNL-----GANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLY 180

Query: 205 TLDISGCFDLEELPKGIGKLVNMKHLL--NSRTSSVRYMPVGIGRLTGLRTLG----EFT 258
           +L ++    +E++   +  L ++ +     ++ + +      +  +T L +L     + T
Sbjct: 181 SLSLNYN-QIEDIS-PLASLTSLHYFTAYVNQITDIT----PVANMTRLNSLKIGNNKIT 234

Query: 259 KACRLESLKNLEHLQICG 276
               L +L  L  L+I  
Sbjct: 235 DLSPLANLSQLTWLEIGT 252

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.4 bits (93), Expect = 8e-04
 Identities = 32/157 (20%), Positives = 49/157 (31%), Gaps = 39/157 (24%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLE 204
             EL S+  L       +   +   I   IE L +L YL+L+   I  +   L  L  L 
Sbjct: 40  QEELESITKLVV-----AGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLT 91

Query: 205 TLD-----------ISGCFDLEEL---------PKGIGKLVNMKHL---LNSRTSSVRYM 241
            L            +    +L EL            +  L  M  L    N   S     
Sbjct: 92  NLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSD---- 147

Query: 242 PVGIGRLTGLRTLG----EFTKACRLESLKNLEHLQI 274
              +  +TGL  L     +      + +L +L  L +
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSL 184

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 28/130 (21%)

Query: 141 LEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCEL 200
           L  L      L +L       S +SLT E+P   + L  L   + + + +  LP  L  L
Sbjct: 83  LSSLPELPPHLESLVA-----SCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYL 136

Query: 201 Y----------------NLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVG 244
                             L+ +D+     L++LP     L      + +  + +  +P  
Sbjct: 137 GVSNNQLEKLPELQNSSFLKIIDVDNNS-LKKLPDLPPSLEF----IAAGNNQLEELPE- 190

Query: 245 IGRLTGLRTL 254
           +  L  L  +
Sbjct: 191 LQNLPFLTAI 200

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 22/138 (15%)

Query: 141 LEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCEL 200
           L++L     SL  +         + L  E+P  ++ L  L  +      ++KLP+     
Sbjct: 165 LKKLPDLPPSLEFIAA-----GNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPD---LP 214

Query: 201 YNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKA 260
            +LE++       LEELP  +  L  +  +       ++ +P     L  L         
Sbjct: 215 LSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRD----- 266

Query: 261 CRLESL----KNLEHLQI 274
             L  L    ++L  L +
Sbjct: 267 NYLTDLPELPQSLTFLDV 284

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 27/146 (18%)

Query: 141 LEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKL--------------VHLRYLSLS 186
           L +L     SL  LD   S +  S L  E+P N+  L                L  L++S
Sbjct: 269 LTDLPELPQSLTFLD--VSENIFSGL-SELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 325

Query: 187 FQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIG 246
              + +LP        LE L  S    L E+P+    L  + H+  +        P    
Sbjct: 326 NNKLIELPALPP---RLERLIASFN-HLAEVPELPQNLKQL-HVEYNPLREF---PDIPE 377

Query: 247 RLTGLRTLGEFTKACRLESLKNLEHL 272
            +  LR      +    E  +NL+ L
Sbjct: 378 SVEDLRMNSHLAEV--PELPQNLKQL 401

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 18/133 (13%)

Query: 141 LEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCEL 200
           L++L     SL ++         + L       ++ L  L  +      ++ LP+     
Sbjct: 207 LKKLPDLPLSLESIVA-----GNNILE--ELPELQNLPFLTTIYADNNLLKTLPDLPP-- 257

Query: 201 YNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLG-EFTK 259
            +LE L++     L +LP+    L  +    N  +     +      L  L     E   
Sbjct: 258 -SLEALNVRDN-YLTDLPELPQSLTFLDVSENIFSG----LSELPPNLYYLNASSNEIRS 311

Query: 260 ACRLESLKNLEHL 272
            C  +   +LE L
Sbjct: 312 LC--DLPPSLEEL 322

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 143 ELFRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIEKLPETLCELY 201
           E+  ++ SL+ LD      S++S++ +  +        L  L++S   +       C   
Sbjct: 368 EMTTQMKSLQQLDI-----SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPP 421

Query: 202 NLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGI-GRLTGLRTL 254
            ++ LD+     ++ +PK + KL  ++  LN  ++ ++ +P GI  RLT L+ +
Sbjct: 422 RIKVLDLHSN-KIKSIPKQVVKLEALQE-LNVASNQLKSVPDGIFDRLTSLQKI 473

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 48/167 (28%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPET---LCELY 201
             +++    LDF     S + LT  +  N   L  L  L L    +++L +      ++ 
Sbjct: 320 PSKISPFLHLDF-----SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 202 NLETLDISGCFDLEELPKGI-GKLVNMKHLLNSR-----------TSSVRYM-------- 241
           +L+ LDIS      +  KG      ++  L  S               ++ +        
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK 434

Query: 242 --PVGIGRLTGLRTL------------GEFTKACRLESLKNLEHLQI 274
             P  + +L  L+ L            G F      + L +L+ + +
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKSVPDGIF------DRLTSLQKIWL 475

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 132 DHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN-IEKLVHLRYLSLSFQHI 190
           D S     I+   F  L  L+ LDF       S+L      +    L  L YL +S+ + 
Sbjct: 382 DLSFNGAIIMSANFMGLEELQHLDF-----QHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 191 EKLP-ETLCELYNLETLDISGCFDLEELPKGI-GKLVNMKHL 230
           +         L +L TL ++G    +     +     N+  L
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 8/100 (8%)

Query: 133 HSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK 192
            +S     L  +F   T+L  LD      S+  L        + L  L+ L++S  ++  
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDL-----SKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511

Query: 193 LP-ETLCELYNLETLDISGCFDLEELPKGIGK-LVNMKHL 230
           L      +LY+L TLD S    +E     +     ++   
Sbjct: 512 LDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFF 550

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 46/137 (33%), Gaps = 13/137 (9%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLE 204
              L SL  LD      +  S +     +      LR+L LSF     +      L  L+
Sbjct: 346 KVALPSLSYLDL---SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402

Query: 205 TLDISGCFDLEELPKG--IGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL-------G 255
            LD      L+ + +      L  + +L  S T++          LT L TL        
Sbjct: 403 HLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 256 EFTKACRLESLKNLEHL 272
           + T +    +  NL  L
Sbjct: 462 DNTLSNVFANTTNLTFL 478

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 17/123 (13%), Positives = 42/123 (34%), Gaps = 7/123 (5%)

Query: 108 GAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLT 167
             I     + +  +    +  G              +   L  +   +F     + ++  
Sbjct: 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF---RLTYTNDF 274

Query: 168 PEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNM 227
            +       L ++  +SL+   I+ L + + + +  ++L I  C  L++ P     L  +
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRC-QLKQFPT--LDLPFL 330

Query: 228 KHL 230
           K L
Sbjct: 331 KSL 333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 9e-06
 Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 13/108 (12%)

Query: 173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLL- 231
             +        +L  + +     T  EL +++ +  +   D++ + +GI  L N+  L  
Sbjct: 16  PDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSV-QGIQYLPNVTKLFL 72

Query: 232 -NSRTSSVRYMPVGIGRLTGLRTLG----EFTKACRLESLKNLEHLQI 274
             ++ + ++     +  L  L  L     +      L+ LK L+ L +
Sbjct: 73  NGNKLTDIK----PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 21/135 (15%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLE 204
              L +L  L         + +  ++  +++ L  L+ LSL    I  +   L  L  LE
Sbjct: 83  LTNLKNLGWLFL-----DENKIK-DLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLE 134

Query: 205 TLDISGC--FDLEELPKGIGKLVNMKHL-LNS-RTSSVRYMPVGIGRLTGLRTLG-EFTK 259
           +L +      D+      + +L  +  L L   + S +      +  LT L+ L      
Sbjct: 135 SLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIV----PLAGLTKLQNLYLSKNH 186

Query: 260 ACRLESLKNLEHLQI 274
              L +L  L++L +
Sbjct: 187 ISDLRALAGLKNLDV 201

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 148 LTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLD 207
              L+ LD      S + L   +    +    + ++SL    +  + + L    NLE  D
Sbjct: 190 FAKLKTLDL-----SSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243

Query: 208 ISG-CFDLEELPKGIGKLVNMKHLLNSRTSSV 238
           + G  F    L     K   ++ +       +
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 14/117 (11%), Positives = 36/117 (30%), Gaps = 9/117 (7%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTP-EIPRNIEKLVHLRYLSLSFQHIEKLPETL 197
            + +      + ++ LD        + +              L +L+L +  I  +   +
Sbjct: 134 MLRDLDEGCRSRVQYLDL-----KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 198 CELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL 254
                L+TLD+S    L  +         +   ++ R + +  +   +     L   
Sbjct: 189 V-FAKLKTLDLSSN-KLAFMGPEFQSAAGVTW-ISLRNNKLVLIEKALRFSQNLEHF 242

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 141 LEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL-PETLCE 199
           + E+ +     +         + SSL   +    +   +++ L LS   + ++    L  
Sbjct: 2   IHEIKQNGNRYKIEKV-----TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

Query: 200 LYNLETLDISGCFDLEELPKGIGKLVNMKHL 230
              LE L++S    L E    +  L  ++ L
Sbjct: 57  FTKLELLNLSSN-VLYETL-DLESLSTLRTL 85

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLC 198
           + L  L +   +++ LD      S + L+     ++     L  L+LS   + +  + L 
Sbjct: 24  QALASLRQSAWNVKELDL-----SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LE 77

Query: 199 ELYNLETLDISGCFDLEELPKG 220
            L  L TLD++    ++EL  G
Sbjct: 78  SLSTLRTLDLNNN-YVQELLVG 98

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 9/92 (9%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLC 198
           +I+   F ++  L  L       S + L   +    + +  L+ L LS  H+  +     
Sbjct: 268 KIMYHPFVKMQRLERLYI-----SNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQP 321

Query: 199 ELYNLETLDISGCFDLEELPKGIGKLVNMKHL 230
           +   LE L +     +  L   +     +K+L
Sbjct: 322 QFDRLENLYLDHNS-IVTLK--LSTHHTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 10/95 (10%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIEKLPE-T 196
           ++   L      +  L+      +   +  EI          ++ L + F  I  LP   
Sbjct: 65  KLPAALLDSFRQVELLNL-----NDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118

Query: 197 LCELYNLETLDISGCFDLEELPKGI-GKLVNMKHL 230
              +  L  L +    DL  LP+GI      +  L
Sbjct: 119 FQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL 152

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 21/155 (13%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIEKLPE-T 196
            I    F  L SL  L        + +LT  IP      L  L  L L   +I  + + +
Sbjct: 142 YISHRAFSGLNSLEQLTL-----EKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 197 LCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL-- 254
              LY L+ L+IS    L+ +       +N+  L  +  +      + +  L  LR L  
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255

Query: 255 ----------GEFTKACRLESLKNLEHLQICGIRR 279
                         +  RL+ +  L   Q+  +  
Sbjct: 256 SYNPISTIEGSMLHELLRLQEI-QLVGGQLAVVEP 289

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIEKLP-ET 196
            + ++ F     L  L+      + + ++  +       L +LR L L    ++ +P   
Sbjct: 46  TLNQDEFASFPHLEELEL-----NENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99

Query: 197 LCELYNLETLDISGCFDLEELPKGI-GKLVNMKHL 230
              L NL  LDIS    +  L   +   L N+K L
Sbjct: 100 FTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSL 133

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 15/147 (10%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLE 204
             +L SL  LD   +  S      +          L+YL LSF  +  +      L  LE
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFG---TTSLKYLDLSFNGVITMSSNFLGLEQLE 399

Query: 205 TLDISGCFDLEELPKGI--GKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL-------G 255
            LD     +L+++ +      L N+ +L  S T +          L+ L  L        
Sbjct: 400 HLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 256 EFTKACRLESLKNLEHLQI--CGIRRL 280
           E         L+NL  L +  C + +L
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQL 485

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE--KLPET 196
            +    F  L+SL+ L         ++L       I  L  L+ L+++   I+  KLPE 
Sbjct: 90  SLALGAFSGLSSLQKLVA-----VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 197 LCELYNLETLDISGCFDLEELPKG-IGKLVNMKHL---LNSRTSSVRYMPVGIGRLTGLR 252
              L NLE LD+S    ++ +    +  L  M  L   L+   + + ++  G  +   L 
Sbjct: 145 FSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203

Query: 253 TL 254
            L
Sbjct: 204 KL 205

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 133 HSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIE 191
            +S     L ++F EL +L  LD      S+  L  ++       L  L+ L+++   ++
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDL-----SQCQLE-QLSPTAFNSLSSLQVLNMASNQLK 507

Query: 192 KLPE-TLCELYNLETLDISG 210
            +P+     L +L+ + +  
Sbjct: 508 SVPDGIFDRLTSLQKIWLHT 527

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 9/96 (9%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIEKLPE-T 196
            +    F  L  L+ L+              I +     L +LR L L    I  L    
Sbjct: 38  TVTASSFPFLEQLQLLEL-----GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92

Query: 197 LCELYNLETLDISGCF--DLEELPKGIGKLVNMKHL 230
              L++L  L +  C   D          L  +  L
Sbjct: 93  FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE--T 196
            +  + F+ L  L  L       S + L     RN   L  L  L LS   I  L    +
Sbjct: 87  FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN---LKALTRLDLSKNQIRSLYLHPS 143

Query: 197 LCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLN 232
             +L +L+++D S    +  + +   + +  K L  
Sbjct: 144 FGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSF 178

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 132 DHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE 191
           + +  +    ++   E  SL  L   E+    +  T       E L HL+ L L+  ++ 
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

Query: 192 KLP-ETLCELYNLETLDISGCFDLEELPKG 220
            LP      L  L  L ++    L  L   
Sbjct: 494 SLPPGVFSHLTALRGLSLNSN-RLTVLSHN 522

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 22/141 (15%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIEKLPETLCE-LYN 202
           F+EL +L  L       + + L   +P  + ++LV+L  L L    ++ LP  + + L  
Sbjct: 81  FKELKNLETLWV-----TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134

Query: 203 LETLDISGCFDLEELPKGI-GKLVNMKHLL--NSRTSSVRYMPVGI-GRLTGLRTLGEFT 258
           L  L +    +L+ LPKG+  KL ++K L   N++   V   P G   +LT L+TL    
Sbjct: 135 LTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRV---PEGAFDKLTELKTLKLDN 190

Query: 259 KACR------LESLKNLEHLQ 273
              +       +SL+ L+ LQ
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQ 211

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query: 132 DHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIE 191
           D+S  N   LE L  E   L  L       +  +       N+ KL  L+ L LS   + 
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-------NLPKLNKLKKLELSDNRVS 77

Query: 192 KLPETLCE-LYNLETLDISGCFDLEELPKGIGKLVNMKHL 230
              E L E   NL  L++SG   +++L   I  L  +++L
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNK-IKDL-STIEPLKKLENL 115

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 11/110 (10%)

Query: 144 LFRELTSLRALDFCESYHSRSSLT--PEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELY 201
                 SL+ L       S++ L    +    +  L +L  L +S      +P++     
Sbjct: 356 CKGAWPSLQTLVL-----SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410

Query: 202 NLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGL 251
            +  L++S    +  +   I + + +  + N+   S     + + RL  L
Sbjct: 411 KMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSF---SLFLPRLQEL 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 12/121 (9%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIEKLP-ET 196
            I     R   +L+ L         S +   I  +    L  L +L LS  H+  L    
Sbjct: 40  YIGHGDLRACANLQVLIL-----KSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSW 93

Query: 197 LCELYNLETLDISGCFDLEELPKG--IGKLVNMKHLLNSRTSSVRYMPVG-IGRLTGLRT 253
              L +L+ L++ G    + L        L N++ L      +   +       LT L  
Sbjct: 94  FGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152

Query: 254 L 254
           L
Sbjct: 153 L 153

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 11/119 (9%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIEKLPE-T 196
            I    F  L +L  L+        + LT  IP      L  L+ L L    IE +P   
Sbjct: 102 TIEIGAFNGLANLNTLEL-----FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYA 155

Query: 197 LCELYNLETLDISGCFDLEELPKGI-GKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL 254
              + +L  LD+     L  + +G    L N+++L  +   ++R +P  +  L  L  L
Sbjct: 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDEL 212

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 33/139 (23%), Positives = 49/139 (35%), Gaps = 24/139 (17%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIEKLPE-T 196
           +I    F  L SL  L+        + LT  IP    E L  LR L L    IE +P   
Sbjct: 113 QIEVGAFNGLASLNTLEL-----FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYA 166

Query: 197 LCELYNLETLDISGCFDLEELPKGI-GKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLG 255
              + +L  LD+     LE + +G    L N+K+L     +              ++ + 
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN--------------IKDMP 212

Query: 256 EFTKACRLESLKNLEHLQI 274
             T    LE L  +     
Sbjct: 213 NLTPLVGLEEL-EMSGNHF 230

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 20/136 (14%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLE 204
             +L  +  L        R  +       +E L +L  ++ S   +  +   L  L  L 
Sbjct: 42  QTDLDQVTTLQA-----DRLGIK--SIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLV 93

Query: 205 TLDISGCFDLEELPKGIGKLVNMKHLL--NSRTSSVRYMPVGIGRLTGLRTLG----EFT 258
            + ++    + ++   +  L N+  L   N++ + +      +  LT L  L       +
Sbjct: 94  DILMNNN-QIADIT-PLANLTNLTGLTLFNNQITDI----DPLKNLTNLNRLELSSNTIS 147

Query: 259 KACRLESLKNLEHLQI 274
               L  L +L+ L  
Sbjct: 148 DISALSGLTSLQQLSF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 23/137 (16%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLE 204
              LTSL+ L F    +  + L P     +  L  L  L +S   +  +   L +L NLE
Sbjct: 152 LSGLTSLQQLSF---GNQVTDLKP-----LANLTTLERLDISSNKVSDISV-LAKLTNLE 202

Query: 205 TLDISGCFDLEELPKGIGKLVNMKHLL---NSRTSSVRYMPVGIGRLTGLRTLG----EF 257
           +L  +    + ++   +G L N+  L    N            +  LT L  L     + 
Sbjct: 203 SLIATNN-QISDIT-PLGILTNLDELSLNGNQLKD-----IGTLASLTNLTDLDLANNQI 255

Query: 258 TKACRLESLKNLEHLQI 274
           +    L  L  L  L++
Sbjct: 256 SNLAPLSGLTKLTELKL 272

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 16/134 (11%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLE 204
              LT+L  L       + + L  +I   +  L +L  L L+   I  L   L  L  L 
Sbjct: 217 LGILTNLDELSL-----NGNQLK-DIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLT 268

Query: 205 TLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLG----EFTKA 260
            L +     +  +   +  L  + +L  +    +  +   I  L  L  L       +  
Sbjct: 269 ELKLGAN-QISNIS-PLAGLTALTNLELNEN-QLEDIS-PISNLKNLTYLTLYFNNISDI 324

Query: 261 CRLESLKNLEHLQI 274
             + SL  L+ L  
Sbjct: 325 SPVSSLTKLQRLFF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 23/137 (16%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLE 204
              LT+L  L         + +T +I   ++ L +L  L LS   I  +   L  L +L+
Sbjct: 108 LANLTNLTGLTL-----FNNQIT-DID-PLKNLTNLNRLELSSNTISDISA-LSGLTSLQ 159

Query: 205 TLDISGCFDLEELPKGIGKLVNMKHLL---NSRTSSVRYMPVGIGRLTGLRTLG----EF 257
            L            K +  L  ++ L    N  +         + +LT L +L     + 
Sbjct: 160 QLSFGNQV---TDLKPLANLTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQI 211

Query: 258 TKACRLESLKNLEHLQI 274
           +    L  L NL+ L +
Sbjct: 212 SDITPLGILTNLDELSL 228

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 10/120 (8%)

Query: 139 EILEELFREL--TSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPET 196
           +I   +F  L   S+ +++     H   +++            L+ L L+  H+ +LP  
Sbjct: 242 DISPAVFEGLCEMSVESINL--QKHYFFNISSNTFHC---FSGLQELDLTATHLSELPSG 296

Query: 197 LCELYNLETLDISGCFDLEELPKG-IGKLVNMKHL-LNSRTSSVRYMPVGIGRLTGLRTL 254
           L  L  L+ L +S     E L +       ++ HL +   T  +      +  L  LR L
Sbjct: 297 LVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 8/94 (8%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLP-ETL 197
            I    F  L +L  LD      +R  +        +    L  L L+   +  +    L
Sbjct: 47  TIQNTTFSRLINLTFLDL-----TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101

Query: 198 CELYNLETLDISGCFDLEELPKG-IGKLVNMKHL 230
                L+ L       +  +    +     ++ L
Sbjct: 102 SGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESL 134

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 140 ILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLP-ETLC 198
             E+LF  L +L+ L+     +       +   +++ L  L  L LSF  +  +      
Sbjct: 440 SSEQLFDGLPALQHLNL--QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 199 ELYNLETLDISG 210
            L  +  +D+S 
Sbjct: 498 SLKMMNHVDLSH 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 25/139 (17%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL-PETL 197
            I         +L +L         + ++            L+ L      I  L  E +
Sbjct: 119 SIDFIPLHNQKTLESLYL-----GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173

Query: 198 CELYNLE--TLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLG 255
             L      +L+++G   +  +  G       + L                   G + L 
Sbjct: 174 SSLQQATNLSLNLNGND-IAGIEPGAFDSAVFQSL----------------NFGGTQNLL 216

Query: 256 EFTKACRLESLKNLEHLQI 274
              K  +  ++++L     
Sbjct: 217 VIFKGLKNSTIQSLWLGTF 235

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 133 HSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK 192
            ++   E+       L +LR LD     H     +      +  L HL+ L+LS+     
Sbjct: 334 GNTKRLELGTGCLENLENLRELDL---SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 193 L-PETLCELYNLETLDISG 210
           L  E   E   LE LD++ 
Sbjct: 391 LKTEAFKECPQLELLDLAF 409

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 140 ILEELFRELTSLRALDFCE---SYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPET 196
           +LE      +S+  L+  +        S L+     ++ K    R + ++ + + ++ + 
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272

Query: 197 LCELYNLETLDISGCFDLEELPKGI-GKLVNMKHL 230
           L ++  L  L+ S    L+ +P GI  +L +++ +
Sbjct: 273 LNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKI 306

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 14/123 (11%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIEKLPE-T 196
           E+ E  F  L  L+ L        + +    I  N    L  L  L L +    +L    
Sbjct: 44  ELNETSFSRLQDLQFLKV-----EQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98

Query: 197 LCELYNLETLDISGC-FDLEELPKGI-GKLVNMKHL-LNS-RTSSVRYMPVGI-GRLTGL 251
              L NLE L ++ C  D   L       L +++ L L       ++  P      +   
Sbjct: 99  FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ--PASFFLNMRRF 156

Query: 252 RTL 254
             L
Sbjct: 157 HVL 159

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 13/92 (14%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIEKLPE-TLCELYN 202
           F  + +LR LD      S + L   +   +   L  L  L L   HI  +      ++  
Sbjct: 84  FVPVPNLRYLDL-----SSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 203 LETLDISGCFDLEELPKGI----GKLVNMKHL 230
           L+ L +S    +   P  +     KL  +  L
Sbjct: 138 LQKLYLSQN-QISRFPVELIKDGNKLPKLMLL 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLN 232
           + +        +L  + +     T  EL +++ +  +   D++ + +GI  L N+  L  
Sbjct: 19  SDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSV-QGIQYLPNVTKLFL 75

Query: 233 SRTSSVRYMPVGIGRLTGLRTLG----EFTKACRLESLKNLEHLQI 274
           +    +  +   +  L  L  L     +      L+ LK L+ L +
Sbjct: 76  NGN-KLTDIK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 10/104 (9%)

Query: 173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLL- 231
            +  L +L +L L    ++ L  +L +L  L++L +     + ++  G+  L  ++ L  
Sbjct: 85  PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYL 141

Query: 232 -NSRTSSVRYMPVGIGRLTGLRTLG-EFTKACRLESLKNLEHLQ 273
            N++ + +      + RLT L TL  E  +   +  L  L  LQ
Sbjct: 142 GNNKITDIT----VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 181

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 16/120 (13%)

Query: 165 SLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLC-ELYNLETLDISGCFDLEELPKGI-G 222
            +T   P   + L++L+ L L    +  LP  +   L  L  LD+     L  LP  +  
Sbjct: 51  QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFD 109

Query: 223 KLVNMKHL---LNSRTSSVRYMPVGIGRLTGLRTLGEFTKACR------LESLKNLEHLQ 273
           +LV++K L    N  T     +P GI RLT L  L       +       + L +L H  
Sbjct: 110 RLVHLKELFMCCNKLTE----LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 134 SSLNGEILEEL-FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK 192
           ++   +  + +   +L +L +LD      S + +T      IEKL  L  L  +  +I  
Sbjct: 26  AAFEMQATDTISEEQLATLTSLDC--HNSSITDMTG-----IEKLTGLTKLICTSNNITT 78

Query: 193 LPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHL 230
           L   L +  NL  L       L  L   +  L  + +L
Sbjct: 79  LD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYL 111

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 7/73 (9%)

Query: 139 EILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIEKLPETL 197
           ++     + L +L  L       S +S++  +         HLR L L+   + K+P  L
Sbjct: 206 KVDAASLKGLNNLAKLGL-----SFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGGL 259

Query: 198 CELYNLETLDISG 210
            +   ++ + +  
Sbjct: 260 ADHKYIQVVYLHN 272

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 29/121 (23%), Positives = 40/121 (33%), Gaps = 12/121 (9%)

Query: 166 LTPEIPRNIE---KLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIG 222
           LT E+          V  R L L    I  +      L   + +D S   ++ +L  G  
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFP 61

Query: 223 KLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL-------GEFTKACRLESLKNLEHLQIC 275
            L  +K LL +     R        L  L  L        E      L SLK+L +L I 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 276 G 276
            
Sbjct: 122 R 122

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 34/147 (23%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLC-ELYNL 203
            +ELT+L  L    + +   SL   +     KL +L+ L L    ++ LP+ +  +L NL
Sbjct: 81  LKELTNLTYLIL--TGNQLQSLPNGVFD---KLTNLKELVLVENQLQSLPDGVFDKLTNL 135

Query: 204 ETLDISGCFDLEELPKGI-GKLVNMKHL---LNSRTSSVRYMPVGI-GRLTGLRTL---- 254
             L+++    L+ LPKG+  KL N+  L    N   S    +P G+  +LT L+ L    
Sbjct: 136 TYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS----LPEGVFDKLTQLKDLRLYQ 190

Query: 255 --------GEFTKACRLESLKNLEHLQ 273
                   G F      + L +L+++ 
Sbjct: 191 NQLKSVPDGVF------DRLTSLQYIW 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.8
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.8
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.8
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.79
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.76
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.74
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.74
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.73
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.73
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.73
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.72
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.72
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.72
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.71
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.71
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.71
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.7
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.7
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.7
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.7
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.67
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.67
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.67
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.66
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.66
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.65
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.65
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.65
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.64
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.64
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.64
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.64
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.63
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.62
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.62
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.62
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.61
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.6
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.59
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.53
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.53
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.53
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.52
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.45
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.43
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.42
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.4
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.39
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.37
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.37
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.32
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.3
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.26
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.24
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.24
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.21
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.01
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.01
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.97
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.96
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.95
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.95
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.89
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.5
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.39
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	98.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.32
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.32
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.29
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.29
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.13
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.13
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.9
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.77
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.61
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.33
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	96.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.07
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.65
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	95.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.51

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=2e-22  Score=172.96  Aligned_cols=177  Identities=20%  Similarity=0.245  Sum_probs=152.6

Q ss_pred             CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ...+++.|.+..+.+..++..+..+++|++|++++|.      ...+ |..+..+++|++|+++     +|++.+.+|..
T Consensus       102 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~------l~~l-p~~l~~l~~L~~L~L~-----~n~~~~~~p~~  169 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP------LRAL-PASIASLNRLRELSIR-----ACPELTELPEP  169 (328)
T ss_dssp             GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC------CCCC-CGGGGGCTTCCEEEEE-----EETTCCCCCSC
T ss_pred             hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc------cccC-cHHHhcCcCCCEEECC-----CCCCccccChh
Confidence            3568999999999988888889999999999999998      3354 5558999999999999     87778888877


Q ss_pred             ccc---------cCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCC
Q 043587          174 IEK---------LVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVG  244 (285)
Q Consensus       174 i~~---------l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~  244 (285)
                      ++.         +++|++|++++|.++.+|..++++++|++|++++|. +..+|..++.+++|++|++++|++.+.+|..
T Consensus       170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~  248 (328)
T 4fcg_A          170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPI  248 (328)
T ss_dssp             SEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred             HhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHH
Confidence            654         899999999999998999889999999999999998 6678888999999999999999888889999


Q ss_pred             CCCCCcCCcccccc---ccCCccccccCCcCCCceecccCCC
Q 043587          245 IGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLGYV  283 (285)
Q Consensus       245 ~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~~~  283 (285)
                      ++.+++|++|++++   ....+..+..+++|+.|+++++..+
T Consensus       249 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            99999999999887   5667777889999999999887654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=4.1e-21  Score=164.76  Aligned_cols=174  Identities=24%  Similarity=0.284  Sum_probs=155.8

Q ss_pred             CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHH---------hcCCccceeeecccccccc
Q 043587           94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELF---------RELTSLRALDFCESYHSRS  164 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~---------~~~~~L~~L~L~~~~~~~~  164 (285)
                      ...+++.|.+..+.+..++..+..+++|++|++++|.     +.+.+ |..+         .++++|++|+++     +|
T Consensus       125 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~-----~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~-----~n  193 (328)
T 4fcg_A          125 QFAGLETLTLARNPLRALPASIASLNRLRELSIRACP-----ELTEL-PEPLASTDASGEHQGLVNLQSLRLE-----WT  193 (328)
T ss_dssp             GGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET-----TCCCC-CSCSEEEC-CCCEEESTTCCEEEEE-----EE
T ss_pred             ccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCC-----Ccccc-ChhHhhccchhhhccCCCCCEEECc-----CC
Confidence            4578999999999998889999999999999999976     24443 3323         359999999999     88


Q ss_pred             cCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCC
Q 043587          165 SLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVG  244 (285)
Q Consensus       165 ~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~  244 (285)
                      . ...+|..++.+++|++|++++|.++.+|+.++.+++|++|++++|...+.+|..++.+++|++|++++|++.+.+|..
T Consensus       194 ~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~  272 (328)
T 4fcg_A          194 G-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD  272 (328)
T ss_dssp             C-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred             C-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence            8 458899999999999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             CCCCCcCCcccccc---ccCCccccccCCcCCCceecc
Q 043587          245 IGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRR  279 (285)
Q Consensus       245 ~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~  279 (285)
                      ++.+++|++|++++   .+..|..++.+++|+.+++..
T Consensus       273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            99999999999998   778899999999999887653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.82  E-value=2.3e-20  Score=159.06  Aligned_cols=151  Identities=22%  Similarity=0.276  Sum_probs=77.9

Q ss_pred             CceeEEEEEecCCcc---cccchhccccccEEeecC-CCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           96 EKVRHLMLIIGEGAI---FPVSTRRIKRMRSLLIDG-GRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~-~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      .+++.+++..+.+..   ++..+..+++|++|++++ |.     +.+.+ |..|..+++|++|+++     +|.+.+.+|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-----l~~~~-p~~l~~l~~L~~L~Ls-----~n~l~~~~p  118 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-----LVGPI-PPAIAKLTQLHYLYIT-----HTNVSGAIP  118 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-----EESCC-CGGGGGCTTCSEEEEE-----EECCEEECC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-----ccccC-ChhHhcCCCCCEEECc-----CCeeCCcCC
Confidence            355555555555542   455555556666666553 43     22232 3335555555555555     555444455


Q ss_pred             ccccccCCCceEeccccccc-ccchhhhcCCCccEEecCCCCCcCcCcccccccC-CCceeecCCCCCCcccCCCCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIE-KLPETLCELYNLETLDISGCFDLEELPKGIGKLV-NMKHLLNSRTSSVRYMPVGIGRLT  249 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~-~L~~L~l~~~~~~~~~p~~~~~l~  249 (285)
                      ..+..+++|++|++++|.++ .+|..++.+++|++|++++|...+.+|..++.++ +|++|++++|.+.+..|..++.++
T Consensus       119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~  198 (313)
T 1ogq_A          119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred             HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence            55555555555555555554 4455555555555555555553335555555554 555555555554444444444443


Q ss_pred             cCCcccccc
Q 043587          250 GLRTLGEFT  258 (285)
Q Consensus       250 ~L~~L~l~~  258 (285)
                       |++|++++
T Consensus       199 -L~~L~Ls~  206 (313)
T 1ogq_A          199 -LAFVDLSR  206 (313)
T ss_dssp             -CSEEECCS
T ss_pred             -ccEEECcC
Confidence             44444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.80  E-value=4.4e-19  Score=147.93  Aligned_cols=177  Identities=23%  Similarity=0.301  Sum_probs=145.3

Q ss_pred             CCCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+.+++.|.+..+.+..++. .+.++++|++|++++|.      ...+++..|..+++|++|+++     +|.+.+..+
T Consensus        34 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~i~~~~~~~l~~L~~L~l~-----~n~l~~~~~  102 (270)
T 2o6q_A           34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK------LQTLPAGIFKELKNLETLWVT-----DNKLQALPI  102 (270)
T ss_dssp             CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC------CSCCCTTTTSSCTTCCEEECC-----SSCCCCCCT
T ss_pred             CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc------cCeeChhhhcCCCCCCEEECC-----CCcCCcCCH
Confidence            456789999999998887554 78899999999999998      445556667889999999999     888554445


Q ss_pred             ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSVRYMPVGIGRLT  249 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~  249 (285)
                      ..+..+++|++|++++|.++.+|. .++++++|++|++++|. +..+|.. +..+++|++|++++|.+.+..+..+..++
T Consensus       103 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  181 (270)
T 2o6q_A          103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT  181 (270)
T ss_dssp             TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCC
Confidence            667889999999999999998875 46899999999999998 6666654 78999999999999988865556789999


Q ss_pred             cCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587          250 GLRTLGEFT---KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       250 ~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      +|++|++++   .......+..+++|+.|++.+.+
T Consensus       182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            999999988   33333457888999999987754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.80  E-value=7.9e-20  Score=155.73  Aligned_cols=175  Identities=17%  Similarity=0.197  Sum_probs=103.3

Q ss_pred             CCCceeEEEEEe-cCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           94 LDEKVRHLMLII-GEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        94 ~~~~l~~L~l~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ...+++.|.+.+ +.... .+..+.++++|++|++++|.     +.+.+ |..|..+++|++|+++     +|.+.+.+|
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-----l~~~~-p~~~~~l~~L~~L~Ls-----~N~l~~~~p  142 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-----VSGAI-PDFLSQIKTLVTLDFS-----YNALSGTLP  142 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----CEEEC-CGGGGGCTTCCEEECC-----SSEEESCCC
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-----eCCcC-CHHHhCCCCCCEEeCC-----CCccCCcCC
Confidence            345677777773 55443 56667777777777777776     23332 4446667777777777     666555666


Q ss_pred             ccccccCCCceEeccccccc-ccchhhhcCC-CccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCC----
Q 043587          172 RNIEKLVHLRYLSLSFQHIE-KLPETLCELY-NLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGI----  245 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~----  245 (285)
                      ..+..+++|++|++++|.++ .+|..++.++ +|++|++++|...+..|..++.+. |++|++++|.+.+..|..+    
T Consensus       143 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~  221 (313)
T 1ogq_A          143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK  221 (313)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS
T ss_pred             hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC
Confidence            66666777777777776665 5666666665 666666666654434555555444 5555555554444444444    


Q ss_pred             -------------------CCCCcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587          246 -------------------GRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       246 -------------------~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                                         ..+++|++|++++   .+..+..+..+++|+.|+++++
T Consensus       222 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             CCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence                               4445555555554   2344555556666666655543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.80  E-value=1.4e-19  Score=171.97  Aligned_cols=81  Identities=20%  Similarity=0.162  Sum_probs=57.4

Q ss_pred             CCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCce
Q 043587          200 LYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICG  276 (285)
Q Consensus       200 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~  276 (285)
                      +++|+.|++++|+..+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++   .+..|..+..++.|+.|+
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            34566666666665566677777777777777777777777777777777777777776   556677777777777777


Q ss_pred             eccc
Q 043587          277 IRRL  280 (285)
Q Consensus       277 i~~~  280 (285)
                      ++++
T Consensus       711 ls~N  714 (768)
T 3rgz_A          711 LSNN  714 (768)
T ss_dssp             CCSS
T ss_pred             CcCC
Confidence            7665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.79  E-value=4.2e-19  Score=149.11  Aligned_cols=175  Identities=23%  Similarity=0.235  Sum_probs=103.6

Q ss_pred             CCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           95 DEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ..+++.|.+..+.+... +..+.++++|++|++++|.     ....+.+..+..+++|++|+++     +|.+.+..|..
T Consensus        55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----~l~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~  124 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-----QLRSVDPATFHGLGRLHTLHLD-----RCGLQELGPGL  124 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT-----TCCCCCTTTTTTCTTCCEEECT-----TSCCCCCCTTT
T ss_pred             CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC-----CccccCHHHhcCCcCCCEEECC-----CCcCCEECHhH
Confidence            34555555555554442 4455555666666665553     1222223445566666666666     66644444555


Q ss_pred             ccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCCcC
Q 043587          174 IEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGL  251 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L  251 (285)
                      +..+++|++|++++|.++.+|. .++++++|++|++++|. ++.+|. .+..+++|++|++++|.+.+..|..++.+++|
T Consensus       125 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  203 (285)
T 1ozn_A          125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence            6666667777777766666654 35566677777777766 444443 36666777777777776666556667777777


Q ss_pred             Ccccccc---ccCCccccccCCcCCCceeccc
Q 043587          252 RTLGEFT---KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       252 ~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      ++|++++   ....+..+..+++|+.|++++.
T Consensus       204 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          204 MTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence            7777766   2223334666777777776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.79  E-value=2.6e-19  Score=150.40  Aligned_cols=176  Identities=19%  Similarity=0.197  Sum_probs=145.2

Q ss_pred             CCCCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeeccccccccc-CCCcc
Q 043587           93 SLDEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSS-LTPEI  170 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~  170 (285)
                      ..+.+++.|.+..+.+..++ ..+..+++|++|++++|.      ...+.+..|..+++|++|+++     +|. +....
T Consensus        29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~-----~n~~l~~~~   97 (285)
T 1ozn_A           29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV------LARIDAAAFTGLALLEQLDLS-----DNAQLRSVD   97 (285)
T ss_dssp             TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECC-----SCTTCCCCC
T ss_pred             CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc------cceeCHhhcCCccCCCEEeCC-----CCCCccccC
Confidence            45778999999999888754 568899999999999997      444446668899999999999     886 44444


Q ss_pred             cccccccCCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCcccCCCCCCC
Q 043587          171 PRNIEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVRYMPVGIGRL  248 (285)
Q Consensus       171 p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l  248 (285)
                      |..+..+++|++|++++|.++.+ |..+.++++|++|++++|. ++.+| ..++.+++|++|++++|.+.+..+..+..+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  176 (285)
T 1ozn_A           98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL  176 (285)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCc
Confidence            77889999999999999998877 4567889999999999998 55555 458899999999999998875555569999


Q ss_pred             CcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587          249 TGLRTLGEFT---KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       249 ~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      ++|++|++++   ....+..+..+++|+.|+++++
T Consensus       177 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence            9999999998   4445677889999999998875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.79  E-value=4.1e-19  Score=168.66  Aligned_cols=176  Identities=24%  Similarity=0.268  Sum_probs=129.8

Q ss_pred             CCceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           95 DEKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ..+++.+.+..+.... .+..+..+++|++|++.+|.     +.+. .|..+..+++|++|+++     +|.+.+.+|.+
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-----l~~~-~p~~l~~l~~L~~L~L~-----~N~l~~~~p~~  509 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-----LTGE-IPSGLSNCTNLNWISLS-----NNRLTGEIPKW  509 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-----CCSC-CCGGGGGCTTCCEEECC-----SSCCCSCCCGG
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc-----ccCc-CCHHHhcCCCCCEEEcc-----CCccCCcCChH
Confidence            3455666666555543 55566666666666666665     2333 24557777777777777     77766777888


Q ss_pred             ccccCCCceEeccccccc-ccchhhhcCCCccEEecCCCCCcCcCcccc-------------------------------
Q 043587          174 IEKLVHLRYLSLSFQHIE-KLPETLCELYNLETLDISGCFDLEELPKGI-------------------------------  221 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l-------------------------------  221 (285)
                      ++.+++|++|++++|.++ .+|..++.+++|+.|++++|...+.+|..+                               
T Consensus       510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (768)
T 3rgz_A          510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG  589 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred             HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence            888888888888888866 677778888888888888887555555433                               


Q ss_pred             ---------------------------------------cccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc---c
Q 043587          222 ---------------------------------------GKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---K  259 (285)
Q Consensus       222 ---------------------------------------~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~  259 (285)
                                                             +.+++|+.|++++|.+.+.+|..++.+++|+.|++++   .
T Consensus       590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  669 (768)
T 3rgz_A          590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS  669 (768)
T ss_dssp             SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC
Confidence                                                   2346788888888888888888899999999999988   6


Q ss_pred             cCCccccccCCcCCCceecccC
Q 043587          260 ACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       260 ~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      +..+..++.+++|+.|+++++.
T Consensus       670 g~ip~~l~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          670 GSIPDEVGDLRGLNILDLSSNK  691 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCChHHhCCCCCCEEECCCCc
Confidence            7788889999999999888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=1.4e-18  Score=143.23  Aligned_cols=154  Identities=21%  Similarity=0.256  Sum_probs=118.1

Q ss_pred             CCCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+..++.|.+..+.+... +..+.++++|++|++++|.      ...+++..|..+++|++|+++     +|.+.+..+
T Consensus        32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~  100 (251)
T 3m19_A           32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ------LQTLSAGVFDDLTELGTLGLA-----NNQLASLPL  100 (251)
T ss_dssp             CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC------CCCCCTTTTTTCTTCCEEECT-----TSCCCCCCT
T ss_pred             CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc------CCccCHhHhccCCcCCEEECC-----CCcccccCh
Confidence            4566788888888877763 3467888888888888887      334455667888888888888     777555455


Q ss_pred             ccccccCCCceEecccccccccchh-hhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLT  249 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~  249 (285)
                      ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. ++.+|. .++.+++|++|++++|.+.+..|..+..++
T Consensus       101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  179 (251)
T 3m19_A          101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG  179 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence            6677888888888888888887764 4678888888888887 555554 578888888888888887765566788888


Q ss_pred             cCCcccccc
Q 043587          250 GLRTLGEFT  258 (285)
Q Consensus       250 ~L~~L~l~~  258 (285)
                      +|+.|++++
T Consensus       180 ~L~~L~l~~  188 (251)
T 3m19_A          180 KLQTITLFG  188 (251)
T ss_dssp             TCCEEECCS
T ss_pred             CCCEEEeeC
Confidence            888888877

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=3.6e-18  Score=142.57  Aligned_cols=171  Identities=22%  Similarity=0.247  Sum_probs=105.5

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ..+++.+.+..+.+... ..+..+++|++|++++|.      ...+ + .+..+++|++|+++     +|.+.+..+..+
T Consensus        40 l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~------l~~~-~-~l~~l~~L~~L~L~-----~n~l~~~~~~~~  105 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNK------LHDI-S-ALKELTNLTYLILT-----GNQLQSLPNGVF  105 (272)
T ss_dssp             HTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSC------CCCC-G-GGTTCTTCCEEECT-----TSCCCCCCTTTT
T ss_pred             ccceeeeeeCCCCcccc-cccccCCCCcEEECCCCC------CCCc-h-hhcCCCCCCEEECC-----CCccCccChhHh
Confidence            44566666666655432 345667777777777776      2222 2 35667777777777     666444444456


Q ss_pred             cccCCCceEecccccccccchh-hhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587          175 EKLVHLRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR  252 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~  252 (285)
                      +.+++|++|++++|.++.+|+. ++.+++|++|++++|. ++.+|. .++.+++|++|++++|.+.+..|..++.+++|+
T Consensus       106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  184 (272)
T 3rfs_A          106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK  184 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence            6677777777777776666543 5667777777777776 444443 356677777777777766654444566777777


Q ss_pred             cccccc---ccCCccccccCCcCCCceeccc
Q 043587          253 TLGEFT---KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       253 ~L~l~~---~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      +|++++   ....+..+..+++|+.|++.++
T Consensus       185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            777766   3333344566677777776654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.76  E-value=1.7e-18  Score=154.73  Aligned_cols=108  Identities=23%  Similarity=0.253  Sum_probs=71.1

Q ss_pred             CCCCceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+.+++.|.+..+.+.. .+..+.++++|++|++++|.      ...+.+..|.++++|++|+|+     +|.+....+
T Consensus        72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~  140 (452)
T 3zyi_A           72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS------IRQIEVGAFNGLASLNTLELF-----DNWLTVIPS  140 (452)
T ss_dssp             CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECC-----SSCCSBCCT
T ss_pred             CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc------cCCcChhhccCcccCCEEECC-----CCcCCccCh
Confidence            456688888888887776 35677888888888888887      344445567777888888887     666333333


Q ss_pred             ccccccCCCceEecccccccccch-hhhcCCCccEEecCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGC  211 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~  211 (285)
                      ..+..+++|++|++++|.++.+|. .+.++++|+.|++++|
T Consensus       141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~  181 (452)
T 3zyi_A          141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL  181 (452)
T ss_dssp             TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred             hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC
Confidence            446667777777777777665553 3444444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=2.9e-18  Score=152.73  Aligned_cols=175  Identities=21%  Similarity=0.239  Sum_probs=98.9

Q ss_pred             CCCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+.+++.|.+..+.+..+ +..+.++++|++|++++|.      ...+.+..|.++++|++|+|+     +|.+....+
T Consensus        61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~-----~n~l~~~~~  129 (440)
T 3zyj_A           61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH------IRTIEIGAFNGLANLNTLELF-----DNRLTTIPN  129 (440)
T ss_dssp             CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC------CCEECGGGGTTCSSCCEEECC-----SSCCSSCCT
T ss_pred             CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc------CCccChhhccCCccCCEEECC-----CCcCCeeCH
Confidence            4556778888888777663 3567777888888887776      334445557777777777777     666333333


Q ss_pred             ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCC------------------------cCcCcccccccCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFD------------------------LEELPKGIGKLVN  226 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~------------------------~~~lp~~l~~l~~  226 (285)
                      ..+..+++|++|++++|.++.+|. .+.++++|++|++++|..                        ++.+| .+..+++
T Consensus       130 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~  208 (440)
T 3zyj_A          130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIK  208 (440)
T ss_dssp             TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSS
T ss_pred             hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcc
Confidence            456666667777776666665543 333444444444444332                        33333 2444445


Q ss_pred             CceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecc
Q 043587          227 MKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRR  279 (285)
Q Consensus       227 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~  279 (285)
                      |++|++++|.+.+..|..+..+++|++|++++   ....+..+..+++|+.|++++
T Consensus       209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (440)
T 3zyj_A          209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH  264 (440)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred             cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence            55555555555444445555555555555554   222233445555555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.76  E-value=5.5e-19  Score=149.88  Aligned_cols=176  Identities=18%  Similarity=0.205  Sum_probs=123.6

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHH-HHHhcCCccceeeecccccccccCCCccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILE-ELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ..+++.|.+..+.+..++..+..+++|++|++++|.      ...+++ ..+..+++|++|+++     +|.+.+..+..
T Consensus        77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~  145 (306)
T 2z66_A           77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN------LKQMSEFSVFLSLRNLIYLDIS-----HTHTRVAFNGI  145 (306)
T ss_dssp             CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE------EESSTTTTTTTTCTTCCEEECT-----TSCCEECSTTT
T ss_pred             ccccCEEECCCCccccChhhcCCCCCCCEEECCCCc------ccccccchhhhhccCCCEEECC-----CCcCCccchhh
Confidence            456777777777666666667777778888887776      333222 346777788888887     77755556666


Q ss_pred             ccccCCCceEecccccccc--cchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcC
Q 043587          174 IEKLVHLRYLSLSFQHIEK--LPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGL  251 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L  251 (285)
                      +..+++|++|++++|.++.  +|..+..+++|++|++++|...+..|..+..+++|++|++++|.+.+..+..+..+++|
T Consensus       146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  225 (306)
T 2z66_A          146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL  225 (306)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred             cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence            7777888888888887764  66777778888888888887444446677778888888888887765545567778888


Q ss_pred             Ccccccc---ccCCccccccCC-cCCCceecccC
Q 043587          252 RTLGEFT---KACRLESLKNLE-HLQICGIRRLG  281 (285)
Q Consensus       252 ~~L~l~~---~~~~~~~l~~l~-~L~~L~i~~~~  281 (285)
                      +.|++++   ....+..+..++ +|+.|++++..
T Consensus       226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             CEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            8888877   444555666663 77777776653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.76  E-value=1.4e-18  Score=147.38  Aligned_cols=178  Identities=19%  Similarity=0.187  Sum_probs=96.5

Q ss_pred             CCCCceeEEEEEecCCcccccc-hhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFPVS-TRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+.++++|.+..+.+..++.. +.++++|++|++++|....   .+.. +..+..+++|++|+++     +|. ...+|
T Consensus        25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~-~~~~~~~~~L~~L~Ls-----~n~-i~~l~   94 (306)
T 2z66_A           25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF---KGCC-SQSDFGTTSLKYLDLS-----FNG-VITMS   94 (306)
T ss_dssp             CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE---EEEE-EHHHHSCSCCCEEECC-----SCS-EEEEE
T ss_pred             CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc---ccCc-ccccccccccCEEECC-----CCc-cccCh
Confidence            3456788888888777765543 5778888888888776210   0111 2234556777777777     555 33344


Q ss_pred             ccccccCCCceEecccccccccc--------------------------hhhhcCCCccEEecCCCCCcC-cCccccccc
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLP--------------------------ETLCELYNLETLDISGCFDLE-ELPKGIGKL  224 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp--------------------------~~i~~l~~L~~L~l~~~~~~~-~lp~~l~~l  224 (285)
                      ..+..+++|++|++++|.++.++                          ..+.++++|++|++++|...+ ..|..+..+
T Consensus        95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  174 (306)
T 2z66_A           95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  174 (306)
T ss_dssp             EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence            44555555555555555544443                          233444455555555554222 244455555


Q ss_pred             CCCceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587          225 VNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       225 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      ++|++|++++|.+.+..|..++.+++|++|++++   .......+..+++|+.|+++++
T Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence            5555555555555544455555555566655555   2222223555556666655544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.74  E-value=1.8e-18  Score=144.53  Aligned_cols=176  Identities=17%  Similarity=0.119  Sum_probs=97.8

Q ss_pred             CCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587           94 LDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR  172 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~  172 (285)
                      .+.+++.|.+..+.+...+. .+.++++|++|++++|.      ...+++..|..+++|++|+++     +|.+.+..+.
T Consensus        26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~~   94 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILT-----GNPIQSLALG   94 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC------CCEECTTTTTTCTTCCEEECT-----TCCCCEECTT
T ss_pred             CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc------CCccCHHHccCCcCCCEEECC-----CCccCccChh
Confidence            44566666666666655333 56666667777666665      333334445666666666666     5553333344


Q ss_pred             cccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcC-cCcccccccCCCceeecCCCCCCcccCCC------
Q 043587          173 NIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLE-ELPKGIGKLVNMKHLLNSRTSSVRYMPVG------  244 (285)
Q Consensus       173 ~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~------  244 (285)
                      .+..+++|++|++++|.+..++. .++++++|++|++++|.... .+|..++.+++|++|++++|.+.+..+..      
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  174 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  174 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred             hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence            55556666666666665555443 45555566666666555222 14555555556666666555544322222      


Q ss_pred             ---------------------CCCCCcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587          245 ---------------------IGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       245 ---------------------~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                                           .....+|++|++++   .......+..+++|+.|++++.
T Consensus       175 L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence                                 22333566666665   2222334577888888888754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.74  E-value=1e-17  Score=138.10  Aligned_cols=171  Identities=20%  Similarity=0.213  Sum_probs=139.0

Q ss_pred             ceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccc
Q 043587           97 KVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEK  176 (285)
Q Consensus        97 ~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~  176 (285)
                      ..+.+++.......+|..+.  ++++.|++++|.      ...+.+..|..+++|++|+++     +|.+.+..|..+..
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~~~~~~   81 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG------LATLSDATFRGLTKLTWLNLD-----YNQLQTLSAGVFDD   81 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC------CCCCCTTTTTTCTTCCEEECT-----TSCCCCCCTTTTTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCC------cCccCHhHhcCcccCCEEECC-----CCcCCccCHhHhcc
Confidence            34566777777776676554  689999999998      444456668899999999999     88866666777899


Q ss_pred             cCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          177 LVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       177 l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                      +++|++|++++|.++.+|. .+..+++|++|++++|. ++.+|.. +..+++|++|++++|.+.+..|..++.+++|++|
T Consensus        82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  160 (251)
T 3m19_A           82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL  160 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence            9999999999999998875 56799999999999998 6666654 6889999999999998885555579999999999


Q ss_pred             cccc---ccCCccccccCCcCCCceecccC
Q 043587          255 GEFT---KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       255 ~l~~---~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      ++++   ....+..+..+++|+.|++.+..
T Consensus       161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            9998   33344568889999999988754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.74  E-value=6.4e-18  Score=142.36  Aligned_cols=174  Identities=19%  Similarity=0.138  Sum_probs=141.4

Q ss_pred             CCCCceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+..++.|.+..+.+.. .+..+.++++|++|++++|.      ...+++  ...+++|++|+++     +|. ...+|
T Consensus        28 ~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~--~~~l~~L~~L~Ls-----~N~-l~~l~   93 (290)
T 1p9a_G           28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE------LTKLQV--DGTLPVLGTLDLS-----HNQ-LQSLP   93 (290)
T ss_dssp             CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC------CCEEEC--CSCCTTCCEEECC-----SSC-CSSCC
T ss_pred             CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc------cCcccC--CCCCCcCCEEECC-----CCc-CCcCc
Confidence            456789999999998877 35678899999999999998      333322  2678999999999     888 56788


Q ss_pred             ccccccCCCceEecccccccccc-hhhhcCCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLP-ETLCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSVRYMPVGIGRLT  249 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~  249 (285)
                      ..+..+++|++|++++|.++.+| ..+.++++|++|++++|+ +..+|.. +..+++|++|++++|++....+..+..++
T Consensus        94 ~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  172 (290)
T 1p9a_G           94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE  172 (290)
T ss_dssp             CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred             hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence            88889999999999999999887 468899999999999998 5566554 67899999999999988744444568899


Q ss_pred             cCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587          250 GLRTLGEFT--KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       250 ~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      +|+.|++++  -...+..+..+.+|+.|++.+..
T Consensus       173 ~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          173 NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            999999988  44667777778889988887653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.74  E-value=1.3e-17  Score=140.43  Aligned_cols=148  Identities=24%  Similarity=0.206  Sum_probs=65.5

Q ss_pred             CceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc
Q 043587           96 EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE  175 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~  175 (285)
                      .+++.|.+..+.+..++.. ..+++|++|++++|.      ...+ +..+..+++|++|+++     +|++.+..|..+.
T Consensus        55 ~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~------l~~l-~~~~~~l~~L~~L~l~-----~N~l~~l~~~~~~  121 (290)
T 1p9a_G           55 TRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ------LQSL-PLLGQTLPALTVLDVS-----FNRLTSLPLGALR  121 (290)
T ss_dssp             TTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC------CSSC-CCCTTTCTTCCEEECC-----SSCCCCCCSSTTT
T ss_pred             CCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc------CCcC-chhhccCCCCCEEECC-----CCcCcccCHHHHc
Confidence            3444444444444432222 444445555555444      2222 2223444445555554     4442222233444


Q ss_pred             ccCCCceEecccccccccchh-hhcCCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCCcccCCCCCCCCcCCc
Q 043587          176 KLVHLRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRT  253 (285)
Q Consensus       176 ~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~  253 (285)
                      .+++|++|++++|.++.+|.. +..+++|+.|++++|+ +..+|.. +..+++|++|++++|.+. .+|..+..+.+|+.
T Consensus       122 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~  199 (290)
T 1p9a_G          122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF  199 (290)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSE
T ss_pred             CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCe
Confidence            445555555555554444432 2344455555555544 3333332 234445555555544443 44444444444544


Q ss_pred             ccccc
Q 043587          254 LGEFT  258 (285)
Q Consensus       254 L~l~~  258 (285)
                      +++.+
T Consensus       200 l~L~~  204 (290)
T 1p9a_G          200 AFLHG  204 (290)
T ss_dssp             EECCS
T ss_pred             EEeCC
Confidence            44444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.74  E-value=5.7e-18  Score=150.87  Aligned_cols=175  Identities=20%  Similarity=0.248  Sum_probs=130.5

Q ss_pred             CCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc-c
Q 043587           95 DEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP-R  172 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p-~  172 (285)
                      ..+++.|.+..+.+..++. .+.++++|++|++++|.      ...+++..|..+++|+.|+++     +|+..+.++ .
T Consensus       111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~------i~~~~~~~~~~l~~L~~L~l~-----~~~~l~~i~~~  179 (440)
T 3zyj_A          111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP------IESIPSYAFNRIPSLRRLDLG-----ELKRLSYISEG  179 (440)
T ss_dssp             CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC------CCEECTTTTTTCTTCCEEECC-----CCTTCCEECTT
T ss_pred             CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc------ccccCHHHhhhCcccCEeCCC-----CCCCcceeCcc
Confidence            3455556665555554333 45556666666666665      333344446666666666666     544455554 3


Q ss_pred             cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587          173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR  252 (285)
Q Consensus       173 ~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~  252 (285)
                      .+..+++|++|++++|.++.+| .+..+++|+.|++++|......|..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus       180 ~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  258 (440)
T 3zyj_A          180 AFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV  258 (440)
T ss_dssp             TTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred             hhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence            6788999999999999999888 588999999999999985555578899999999999999999888888999999999


Q ss_pred             cccccc---ccCCccccccCCcCCCceecccC
Q 043587          253 TLGEFT---KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       253 ~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      +|++++   .......+..+++|+.|++++..
T Consensus       259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             EEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             EEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            999998   44444557889999999988754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.74  E-value=7.4e-18  Score=140.49  Aligned_cols=171  Identities=16%  Similarity=0.152  Sum_probs=136.2

Q ss_pred             ceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccc
Q 043587           97 KVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEK  176 (285)
Q Consensus        97 ~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~  176 (285)
                      ..+.+.+..+.+..+|..+.  ++++.|++++|.      ...+++..|..+++|++|+++     +|.+....+..+..
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~-----~n~l~~i~~~~~~~   83 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK------LSSLPSKAFHRLTKLRLLYLN-----DNKLQTLPAGIFKE   83 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC------CSCCCTTSSSSCTTCCEEECC-----SSCCSCCCTTTTSS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC------CCeeCHHHhcCCCCCCEEECC-----CCccCeeChhhhcC
Confidence            35677777777776666543  689999999998      445556668899999999999     88844433445678


Q ss_pred             cCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCccc
Q 043587          177 LVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLG  255 (285)
Q Consensus       177 l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  255 (285)
                      +++|++|++++|.++.+|. .+.++++|++|++++|......|..++.+++|++|++++|.+.+..+..++.+++|++|+
T Consensus        84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  163 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR  163 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence            9999999999999998875 457899999999999984444455678999999999999988755555689999999999


Q ss_pred             ccc---ccCCccccccCCcCCCceeccc
Q 043587          256 EFT---KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       256 l~~---~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      +++   ....+..+..+++|+.|+++++
T Consensus       164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          164 LYNNQLKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ecCCcCcEeChhHhccCCCcCEEECCCC
Confidence            988   3333445888999999999875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.73  E-value=3.6e-18  Score=157.96  Aligned_cols=178  Identities=15%  Similarity=0.094  Sum_probs=145.5

Q ss_pred             CCCCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+.+++.++++.+.+...+ ..+.++++|++|++++|.      ...+.+..|.++++|++|+++     +|.+.+..|
T Consensus        29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~Ls-----~n~l~~~~p   97 (606)
T 3vq2_A           29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLILT-----GNPIQSFSP   97 (606)
T ss_dssp             TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECT-----TCCCCCCCT
T ss_pred             CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeECC-----CCcccccCh
Confidence            46789999999999888744 488999999999999998      445557778999999999999     999666668


Q ss_pred             ccccccCCCceEecccccccccc-hhhhcCCCccEEecCCCCCcC-cCcccccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLP-ETLCELYNLETLDISGCFDLE-ELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLT  249 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~  249 (285)
                      ..++.+++|++|++++|.++.+| ..++++++|++|++++|...+ .+|..++++++|++|++++|.+.+..|..++.+.
T Consensus        98 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  177 (606)
T 3vq2_A           98 GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR  177 (606)
T ss_dssp             TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHH
T ss_pred             hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhh
Confidence            99999999999999999998886 678999999999999998444 5799999999999999999999887778888887


Q ss_pred             cCC----cccccc--ccCCccccccCCcCCCceecccC
Q 043587          250 GLR----TLGEFT--KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       250 ~L~----~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      +|+    +|++++  ....+.......+|+.|+++++.
T Consensus       178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~  215 (606)
T 3vq2_A          178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF  215 (606)
T ss_dssp             HCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred             ccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence            776    577776  22222233333367878777653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.73  E-value=5.1e-18  Score=152.61  Aligned_cols=178  Identities=19%  Similarity=0.160  Sum_probs=130.9

Q ss_pred             CCCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+.+++.|++..+.+... +..+.++++|++|++++|.      ...+.+..|.++++|++|+++     +|.+....+
T Consensus        29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~   97 (477)
T 2id5_A           29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI------VSAVEPGAFNNLFNLRTLGLR-----SNRLKLIPL   97 (477)
T ss_dssp             CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECC-----SSCCCSCCT
T ss_pred             CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc------cCEeChhhhhCCccCCEEECC-----CCcCCccCc
Confidence            4567889999998888774 5678889999999998887      444446668888899999998     777443333


Q ss_pred             ccccccCCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCc
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTG  250 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~  250 (285)
                      ..+..+++|++|++++|.++.+ |..+.++++|+.|++++|......|..+..+++|++|++++|.+.+..+..+..+++
T Consensus        98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  177 (477)
T 2id5_A           98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG  177 (477)
T ss_dssp             TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred             ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence            4577888888888888887765 456778888888888888744445667788888888888888776544445777788


Q ss_pred             CCcccccc---ccCCccccccCCcCCCceecccC
Q 043587          251 LRTLGEFT---KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       251 L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      |+.|++.+   .......+..+++|+.|+++++.
T Consensus       178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred             CcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence            88887776   33334456677777777776654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.73  E-value=9.1e-18  Score=150.06  Aligned_cols=180  Identities=19%  Similarity=0.145  Sum_probs=108.2

Q ss_pred             CCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccc-----------
Q 043587           95 DEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHS-----------  162 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~-----------  162 (285)
                      ..+++.|.+..+.+..+ +..+.++++|++|++++|.      ...+++..|..+++|++|++++|.+.           
T Consensus        98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  171 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW------LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP  171 (452)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred             CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc------CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence            34555555555555442 2445555555555555554      22333333444555555555511000           


Q ss_pred             --------cccCCCcccc-cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecC
Q 043587          163 --------RSSLTPEIPR-NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNS  233 (285)
Q Consensus       163 --------~~~~~~~~p~-~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~  233 (285)
                              +|+..+.++. .+..+++|++|++++|.++.+| .+..+++|+.|++++|...+..|..+..+++|++|+++
T Consensus       172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  250 (452)
T 3zyi_A          172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM  250 (452)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECT
T ss_pred             cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeC
Confidence                    3332344332 4556677777777777777665 46677777777777777444446677777788888888


Q ss_pred             CCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587          234 RTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       234 ~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      +|.+.+..|..+..+++|+.|++++   .......+..+++|+.|++++.+
T Consensus       251 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          251 NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence            8777766677777788888888777   33333446677777777776653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.73  E-value=1.2e-18  Score=150.72  Aligned_cols=178  Identities=19%  Similarity=0.212  Sum_probs=141.1

Q ss_pred             CCCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ....+++.|.+..+.+...+. .+.++++|++|++++|.      ...+.+..|.++++|++|+++     +|.+.+..+
T Consensus        49 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls-----~n~l~~~~~  117 (353)
T 2z80_A           49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG------INTIEEDSFSSLGSLEHLDLS-----YNYLSNLSS  117 (353)
T ss_dssp             TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECC-----SSCCSSCCH
T ss_pred             cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc------cCccCHhhcCCCCCCCEEECC-----CCcCCcCCH
Confidence            355689999999998887555 78899999999999997      444456668889999999999     888444333


Q ss_pred             ccccccCCCceEecccccccccch--hhhcCCCccEEecCCCCCcCcC-cccccccCCCceeecCCCCCCcccCCCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPE--TLCELYNLETLDISGCFDLEEL-PKGIGKLVNMKHLLNSRTSSVRYMPVGIGRL  248 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l  248 (285)
                      ..++.+++|++|++++|.++.+|.  .+.++++|++|++++|..++.+ |..++.+++|++|++++|.+.+..|..++.+
T Consensus       118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  197 (353)
T 2z80_A          118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI  197 (353)
T ss_dssp             HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence            448889999999999999998886  6788999999999998545555 5578899999999999998888788899999


Q ss_pred             CcCCcccccc--ccCCcc-ccccCCcCCCceecccC
Q 043587          249 TGLRTLGEFT--KACRLE-SLKNLEHLQICGIRRLG  281 (285)
Q Consensus       249 ~~L~~L~l~~--~~~~~~-~l~~l~~L~~L~i~~~~  281 (285)
                      ++|++|++++  ....+. .+..+++|+.|+++++.
T Consensus       198 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred             ccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence            9999999887  222222 23457788888877653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.72  E-value=2.9e-17  Score=140.77  Aligned_cols=134  Identities=16%  Similarity=0.140  Sum_probs=78.4

Q ss_pred             HHHHHHhcCCccceeeecccccccccCCC--cccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcC
Q 043587          140 ILEELFRELTSLRALDFCESYHSRSSLTP--EIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEEL  217 (285)
Q Consensus       140 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~--~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~l  217 (285)
                      +++..|..+++|++|+++     +|.+..  ..+..+..+++|++|++++|.++.+|..+.  ++|++|++++|...+..
T Consensus       136 ~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          136 VRKSVFNGLNQMIVVELG-----TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVD  208 (330)
T ss_dssp             BCHHHHTTCTTCCEEECC-----SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEEC
T ss_pred             cCHhHhcCCccccEEECC-----CCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccC
Confidence            345556777777777777     555322  345556666677777777666666655433  55666666666533333


Q ss_pred             cccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceeccc
Q 043587          218 PKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       218 p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      |..+..+++|++|++++|.+.+..|..+..+++|++|++++  -...+..+..+++|+.|+++++
T Consensus       209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred             HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence            45566666666666666655544444566666666666665  2344445556666666665543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.72  E-value=3.3e-17  Score=139.18  Aligned_cols=167  Identities=17%  Similarity=0.253  Sum_probs=130.0

Q ss_pred             CCCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR  172 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~  172 (285)
                      ....+++.|.+..+.+...+. +..+++|++|++++|.      ...+ + .+..+++|++|+++     +|. ...++.
T Consensus        60 ~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~------l~~~-~-~~~~l~~L~~L~l~-----~n~-l~~~~~  124 (308)
T 1h6u_A           60 QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP------LKNV-S-AIAGLQSIKTLDLT-----STQ-ITDVTP  124 (308)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC------CSCC-G-GGTTCTTCCEEECT-----TSC-CCCCGG
T ss_pred             hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc------CCCc-h-hhcCCCCCCEEECC-----CCC-CCCchh
Confidence            346788889998888877666 8888899999998887      3333 3 37888889999998     777 444553


Q ss_pred             cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587          173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR  252 (285)
Q Consensus       173 ~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~  252 (285)
                       +..+++|++|++++|.++.++. ++.+++|+.|++++|. +..+|. +..+++|++|++++|.+.+ +|. +..+++|+
T Consensus       125 -l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~  198 (308)
T 1h6u_A          125 -LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLI  198 (308)
T ss_dssp             -GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCC
T ss_pred             -hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCC
Confidence             8888899999999999888875 8888999999999987 666765 8888999999999987764 443 78888999


Q ss_pred             cccccc-ccCCccccccCCcCCCceeccc
Q 043587          253 TLGEFT-KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       253 ~L~l~~-~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      +|++++ .-.....+..+++|+.|+++++
T Consensus       199 ~L~L~~N~l~~~~~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          199 EVHLKNNQISDVSPLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             EEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred             EEEccCCccCccccccCCCCCCEEEccCC
Confidence            999888 2222335888888988888765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.72  E-value=2.8e-18  Score=156.86  Aligned_cols=177  Identities=20%  Similarity=0.233  Sum_probs=144.8

Q ss_pred             CCCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      .....++.|++..+.+... +..+.++++|++|++++|.      ...+++..|..+++|++|+++     +|.+.+..|
T Consensus        23 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls-----~n~l~~~~~   91 (549)
T 2z81_A           23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR------INTIEGDAFYSLGSLEHLDLS-----DNHLSSLSS   91 (549)
T ss_dssp             CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECT-----TSCCCSCCH
T ss_pred             cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC------cCccChhhccccccCCEEECC-----CCccCccCH
Confidence            3457899999999988774 5678999999999999998      445556778999999999999     888666666


Q ss_pred             ccccccCCCceEecccccccc--cchhhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCcccCCCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEK--LPETLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVRYMPVGIGRL  248 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l  248 (285)
                      ..++.+++|++|++++|.++.  .|..++++++|++|++++|...+.+| ..++.+++|++|++++|.+.+..|..++.+
T Consensus        92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  171 (549)
T 2z81_A           92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI  171 (549)
T ss_dssp             HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred             HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence            679999999999999999884  46778999999999999998677776 578999999999999999998899999999


Q ss_pred             CcCCcccccc--ccCCccc-cccCCcCCCceeccc
Q 043587          249 TGLRTLGEFT--KACRLES-LKNLEHLQICGIRRL  280 (285)
Q Consensus       249 ~~L~~L~l~~--~~~~~~~-l~~l~~L~~L~i~~~  280 (285)
                      ++|++|++..  ....+.. ++.+++|+.|+++++
T Consensus       172 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  206 (549)
T 2z81_A          172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT  206 (549)
T ss_dssp             SEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESC
T ss_pred             ccCceEecccCcccccchhhHhhcccccEEEccCC
Confidence            9999998876  2222222 245677777777654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.72  E-value=5.1e-18  Score=156.90  Aligned_cols=132  Identities=18%  Similarity=0.121  Sum_probs=78.3

Q ss_pred             HHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccc--cchhhhcCCCccEEecCCCCCcCcCcccc
Q 043587          144 LFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK--LPETLCELYNLETLDISGCFDLEELPKGI  221 (285)
Q Consensus       144 ~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~l  221 (285)
                      .+..+++|++|+++     +|.+.+..|..++.+++|++|++++|.++.  +|..++.+++|++|++++|...+..|..+
T Consensus       419 ~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  493 (606)
T 3vq2_A          419 AFLSLEKLLYLDIS-----YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF  493 (606)
T ss_dssp             TTTTCTTCCEEECT-----TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             hhhccccCCEEECc-----CCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence            35555566666665     555444455556666666666666666553  45556666666666666666444445556


Q ss_pred             cccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccCC-cCCCceeccc
Q 043587          222 GKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLE-HLQICGIRRL  280 (285)
Q Consensus       222 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~-~L~~L~i~~~  280 (285)
                      +.+++|++|++++|++.+..|..++.+++|++|++++  -...+..+..++ +|+.|++.++
T Consensus       494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSC
T ss_pred             cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCC
Confidence            6666666666666666655566666666666666666  223444455554 3666666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.72  E-value=3e-17  Score=140.69  Aligned_cols=172  Identities=17%  Similarity=0.206  Sum_probs=108.2

Q ss_pred             CCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587           94 LDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR  172 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~  172 (285)
                      .+..++.|.+..+.+...+. .+.++++|++|++++|.      ...+.+..|..+++|++|+++     +|. ...+|.
T Consensus        50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls-----~n~-l~~l~~  117 (330)
T 1xku_A           50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK------ISKISPGAFAPLVKLERLYLS-----KNQ-LKELPE  117 (330)
T ss_dssp             CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECC-----SSC-CSBCCS
T ss_pred             CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc------CCeeCHHHhcCCCCCCEEECC-----CCc-CCccCh
Confidence            45678888888888777544 67888888888888887      334345567888888888888     555 334443


Q ss_pred             c----------------------ccccCCCceEeccccccc---ccchhhhcCCCccEEecCCCCCcCcCcccccccCCC
Q 043587          173 N----------------------IEKLVHLRYLSLSFQHIE---KLPETLCELYNLETLDISGCFDLEELPKGIGKLVNM  227 (285)
Q Consensus       173 ~----------------------i~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L  227 (285)
                      .                      +..+++|++|++++|.++   ..+..+.++++|++|++++|. ++.+|..+.  ++|
T Consensus       118 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~--~~L  194 (330)
T 1xku_A          118 KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLP--PSL  194 (330)
T ss_dssp             SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCC--TTC
T ss_pred             hhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcccc--ccC
Confidence            3                      344444444444444433   123344455555555555554 444444332  556


Q ss_pred             ceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587          228 KHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       228 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      ++|++++|.+.+..|..++.+++|++|++++   ....+..+..+++|+.|+++++
T Consensus       195 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence            6666666666555566777788888888776   2333345777778888877765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.72  E-value=3.7e-17  Score=138.89  Aligned_cols=165  Identities=16%  Similarity=0.225  Sum_probs=103.0

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ..+++.|.+.++.+..++ .+..+++|++|++++|.      ...+.+  +..+++|++|+++     +|. ...++ .+
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~------i~~~~~--~~~l~~L~~L~L~-----~n~-l~~~~-~~  103 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ------ITDLAP--LKNLTKITELELS-----GNP-LKNVS-AI  103 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC------CCCCGG--GTTCCSCCEEECC-----SCC-CSCCG-GG
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc------CCCChh--HccCCCCCEEEcc-----CCc-CCCch-hh
Confidence            345666666666655443 46667777777777776      333322  6667777777777     666 33343 46


Q ss_pred             cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                      ..+++|++|++++|.++.+|. +..+++|+.|++++|. +..+|. ++.+++|++|++++|.+.+ +|. +..+++|++|
T Consensus       104 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L  178 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTL  178 (308)
T ss_dssp             TTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEE
T ss_pred             cCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEE
Confidence            667777777777777766653 6677777777777776 555553 6667777777777776553 333 6667777777


Q ss_pred             cccc-ccCCccccccCCcCCCceeccc
Q 043587          255 GEFT-KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       255 ~l~~-~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      ++++ .......+..+++|+.|+++++
T Consensus       179 ~l~~n~l~~~~~l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          179 KADDNKISDISPLASLPNLIEVHLKNN  205 (308)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECTTS
T ss_pred             ECCCCccCcChhhcCCCCCCEEEccCC
Confidence            7766 2222233666677777766654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=3.6e-17  Score=137.81  Aligned_cols=165  Identities=17%  Similarity=0.255  Sum_probs=97.2

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ..+++.+.+..+.+..++ .+..+++|++|++++|.      ...+.+  +..+++|++|+++     +|. ...+| .+
T Consensus        45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~------l~~~~~--l~~l~~L~~L~l~-----~n~-l~~~~-~l  108 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK------LTDIKP--LANLKNLGWLFLD-----ENK-VKDLS-SL  108 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC------CCCCGG--GTTCTTCCEEECC-----SSC-CCCGG-GG
T ss_pred             cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc------cCCCcc--cccCCCCCEEECC-----CCc-CCCCh-hh
Confidence            345666666666555443 35666667777766665      223222  5666666777666     665 33333 36


Q ss_pred             cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                      ..+++|++|++++|.++.++ .+..+++|+.|++++|. +..+ ..++.+++|++|++++|.+.+..|  +..+++|+.|
T Consensus       109 ~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L  183 (291)
T 1h6t_A          109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL  183 (291)
T ss_dssp             TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             ccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence            66666677777666666653 46666666677766666 4444 356666666777766665553322  6666666666


Q ss_pred             cccc-ccCCccccccCCcCCCceeccc
Q 043587          255 GEFT-KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       255 ~l~~-~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      ++++ .-..+..+..+++|+.|+++++
T Consensus       184 ~L~~N~i~~l~~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          184 YLSKNHISDLRALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             ECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred             ECCCCcCCCChhhccCCCCCEEECcCC
Confidence            6666 2222334666666666666543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.72  E-value=2.3e-17  Score=147.29  Aligned_cols=142  Identities=17%  Similarity=0.115  Sum_probs=87.4

Q ss_pred             CCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587           94 LDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR  172 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~  172 (285)
                      .+.+++.|+++.+.+... +..+.++++|++|++++|.     +...+++..|.++++|++|+++     +|.+.+..|.
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-----~~~~i~~~~~~~l~~L~~L~Ls-----~n~l~~~~~~   97 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-----PGLVIRNNTFRGLSSLIILKLD-----YNQFLQLETG   97 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-----TTCEECTTTTTTCTTCCEEECT-----TCTTCEECTT
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCc-----ccceECcccccccccCCEEeCC-----CCccCccChh
Confidence            456777777777776653 5567777777777777776     2334445556677777777777     6664444466


Q ss_pred             cccccCCCceEecccccccc-cchh--hhcCCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCCcccCCCC
Q 043587          173 NIEKLVHLRYLSLSFQHIEK-LPET--LCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSVRYMPVGI  245 (285)
Q Consensus       173 ~i~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~  245 (285)
                      .++.+++|++|++++|.++. +|..  ++++++|++|++++|...+..|.. ++.+++|++|++++|.+.+..|..+
T Consensus        98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  174 (455)
T 3v47_A           98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL  174 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred             hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence            66666777777777766653 2333  566666666666666633333443 5666666666666665554444333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.72  E-value=2.5e-18  Score=160.02  Aligned_cols=171  Identities=12%  Similarity=0.236  Sum_probs=92.7

Q ss_pred             CceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchh-hHHHHHHhcC------CccceeeecccccccccCC
Q 043587           96 EKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNG-EILEELFREL------TSLRALDFCESYHSRSSLT  167 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~-~~~~~~~~~~------~~L~~L~L~~~~~~~~~~~  167 (285)
                      .+++.|.+..+.... +|..+.++++|++|++++|..    +.+ .+ |..+..+      ++|++|+++     +|.+.
T Consensus       249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~----l~~~~l-p~~~~~L~~~~~l~~L~~L~L~-----~n~l~  318 (636)
T 4eco_A          249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG----ISGEQL-KDDWQALADAPVGEKIQIIYIG-----YNNLK  318 (636)
T ss_dssp             TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT----SCHHHH-HHHHHHHHHSGGGGTCCEEECC-----SSCCS
T ss_pred             CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC----Cccccc-hHHHHhhhccccCCCCCEEECC-----CCcCC
Confidence            445555555544332 444455555555555555530    133 22 3334443      556666665     55533


Q ss_pred             Ccccc--cccccCCCceEeccccccc-ccchhhhcCCCccEEecCCCCCcCcCcccccccCC-CceeecCCCCCCcccCC
Q 043587          168 PEIPR--NIEKLVHLRYLSLSFQHIE-KLPETLCELYNLETLDISGCFDLEELPKGIGKLVN-MKHLLNSRTSSVRYMPV  243 (285)
Q Consensus       168 ~~~p~--~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~-L~~L~l~~~~~~~~~p~  243 (285)
                       .+|.  .++.+++|++|++++|.++ .+| .++.+++|++|++++|. +..+|..++.+++ |++|++++|.+. .+|.
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~  394 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPN  394 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence             5555  5666666666666666655 555 55566666666666665 4456666666666 666666666555 5565


Q ss_pred             CCCCCC--cCCcccccc---ccCCccccc-------cCCcCCCceeccc
Q 043587          244 GIGRLT--GLRTLGEFT---KACRLESLK-------NLEHLQICGIRRL  280 (285)
Q Consensus       244 ~~~~l~--~L~~L~l~~---~~~~~~~l~-------~l~~L~~L~i~~~  280 (285)
                      .++.+.  +|++|++++   .+..+..+.       .+++|+.|+++++
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N  443 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN  443 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence            555443  566666665   333344444       5556666666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.71  E-value=1.9e-17  Score=138.32  Aligned_cols=153  Identities=23%  Similarity=0.208  Sum_probs=83.3

Q ss_pred             CCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           95 DEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ..+++.|.+..+.+...+ ..+.++++|++|++++|.      ...+++..|..+++|++|+++     +|.+.+..+..
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~  119 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP------IQSLALGAFSGLSSLQKLVAV-----ETNLASLENFP  119 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECT-----TSCCCCSTTCC
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc------cCccChhhhcCCccccEEECC-----CCCccccCchh
Confidence            345555555555544422 245555555555555554      222223334555555555555     44422222223


Q ss_pred             ccccCCCceEecccccccc--cchhhhcCCCccEEecCCCCC---------------------------cCcCccccccc
Q 043587          174 IEKLVHLRYLSLSFQHIEK--LPETLCELYNLETLDISGCFD---------------------------LEELPKGIGKL  224 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~---------------------------~~~lp~~l~~l  224 (285)
                      ++.+++|++|++++|.++.  +|..++++++|++|++++|+.                           +..+|......
T Consensus       120 ~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~  199 (276)
T 2z62_A          120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE  199 (276)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS
T ss_pred             cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC
Confidence            4444555555555554443  344444445555555554442                           33343334344


Q ss_pred             CCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587          225 VNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       225 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  258 (285)
                      .+|++|++++|.+.+..+..++.+++|+.|++++
T Consensus       200 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred             CcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence            5788999999987754445578999999999987

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=8.5e-18  Score=160.31  Aligned_cols=134  Identities=14%  Similarity=0.256  Sum_probs=64.5

Q ss_pred             cccchh--ccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeeccccccccc-CCC-cccccccccC-------C
Q 043587          111 FPVSTR--RIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSS-LTP-EIPRNIEKLV-------H  179 (285)
Q Consensus       111 ~~~~~~--~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~-~~p~~i~~l~-------~  179 (285)
                      +|..++  ++++|++|++++|.     +.+.+ |..|.++++|++|+++     +|+ +.+ .+|..++.+.       +
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~-----l~~~i-P~~l~~L~~L~~L~Ls-----~N~~lsg~~iP~~i~~L~~~~~~l~~  549 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCP-----NMTQL-PDFLYDLPELQSLNIA-----CNRGISAAQLKADWTRLADDEDTGPK  549 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCT-----TCCSC-CGGGGGCSSCCEEECT-----TCTTSCHHHHHHHHHHHHHCTTTTTT
T ss_pred             CChhhhhccCCCCCEEECcCCC-----CCccC-hHHHhCCCCCCEEECc-----CCCCcccccchHHHHhhhhcccccCC
Confidence            444444  55555555555554     23332 3334555555555555     443 333 3444444333       4


Q ss_pred             CceEecccccccccch--hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCc-CCcccc
Q 043587          180 LRYLSLSFQHIEKLPE--TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTG-LRTLGE  256 (285)
Q Consensus       180 L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~l  256 (285)
                      |++|++++|.++.+|.  .++++++|+.|++++|. +..+| .++.+++|++|++++|.+. .+|..+..+++ |++|++
T Consensus       550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~L  626 (876)
T 4ecn_A          550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF  626 (876)
T ss_dssp             CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEEC
T ss_pred             ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEEC
Confidence            5555555555445544  45555555555555554 33444 4445555555555555444 44444554544 555554


Q ss_pred             cc
Q 043587          257 FT  258 (285)
Q Consensus       257 ~~  258 (285)
                      ++
T Consensus       627 s~  628 (876)
T 4ecn_A          627 SH  628 (876)
T ss_dssp             CS
T ss_pred             cC
Confidence            44

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.71  E-value=2.7e-17  Score=152.12  Aligned_cols=175  Identities=20%  Similarity=0.151  Sum_probs=98.3

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc-c
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR-N  173 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~-~  173 (285)
                      ..+++.+.+..+.+..+|..+.++++|++|++.+|.      ...+.+..+..+++|+.|+++     +|.+.+.+|. .
T Consensus       277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~-----~n~~~~~~~~~~  345 (606)
T 3t6q_A          277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK------FENLCQISASNFPSLTHLSIK-----GNTKRLELGTGC  345 (606)
T ss_dssp             CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC------CSBGGGGCGGGCTTCSEEECC-----SCSSCCBCCSST
T ss_pred             ccCCCEEeccCCccCCCChhhcccccCCEEECccCC------cCcCchhhhhccCcCCEEECC-----CCCcccccchhh
Confidence            457888888888777777777888888888888887      333345556777777777777     5554444432 2


Q ss_pred             ccccCCCceEeccccccccc---chhhhcCCCccEEecCCCCCcCcCcccccc-------------------------cC
Q 043587          174 IEKLVHLRYLSLSFQHIEKL---PETLCELYNLETLDISGCFDLEELPKGIGK-------------------------LV  225 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~-------------------------l~  225 (285)
                      +..+++|++|++++|.++.+   |..++.+++|++|++++|...+..|..++.                         ++
T Consensus       346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  425 (606)
T 3t6q_A          346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH  425 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred             hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence            55555555555555554433   334445555555555555433333334444                         44


Q ss_pred             CCceeecCCCCCCcccCCCCCCCCcCCcccccc---cc---CCccccccCCcCCCceeccc
Q 043587          226 NMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KA---CRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       226 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~---~~~~~l~~l~~L~~L~i~~~  280 (285)
                      +|++|++++|.+.+..|..++.+++|++|++++   ..   ..+..+..+++|+.|+++++
T Consensus       426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  486 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC  486 (606)
T ss_dssp             TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence            444445444444444444455555555555554   11   12233555555555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.71  E-value=2.6e-17  Score=144.28  Aligned_cols=131  Identities=14%  Similarity=0.099  Sum_probs=67.4

Q ss_pred             CceeEEEEEecCCcccccc-hhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           96 EKVRHLMLIIGEGAIFPVS-TRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      .+++.+.+..+.+..++.. +..+++|++|++.+|.      ...+++..|..+++|++|+++     +|.+.+..|..+
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~~~~  113 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ------IEEIDTYAFAYAHTIQKLYMG-----FNAIRYLPPHVF  113 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC------CCEECTTTTTTCTTCCEEECC-----SSCCCCCCTTTT
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCc------ccccChhhccCCCCcCEEECC-----CCCCCcCCHHHh
Confidence            4555666665555444432 4555666666666555      223333345555556666665     555333334445


Q ss_pred             cccCCCceEecccccccccchhh-hcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCC
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETL-CELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSS  237 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~  237 (285)
                      +.+++|++|++++|.++.+|..+ +++++|++|++++|...+..|..++.+++|++|++++|.+
T Consensus       114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred             cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence            55555555555555555555432 4555555555555552222233355555555555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.71  E-value=6.8e-17  Score=144.25  Aligned_cols=128  Identities=18%  Similarity=0.128  Sum_probs=105.6

Q ss_pred             CccceeeecccccccccCCCcccccccccCCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCcccccccCCC
Q 043587          149 TSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELPKGIGKLVNM  227 (285)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L  227 (285)
                      ++|+.|+++     +|.+.+..|..++.+++|++|++++|.++.+ |..++++++|++|++++|...+..|..++.+++|
T Consensus       275 ~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          275 SGVKTCDLS-----KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL  349 (455)
T ss_dssp             SCCCEEECC-----SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred             cCceEEEec-----CccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence            456666666     7775666778889999999999999998877 4578899999999999998544457788999999


Q ss_pred             ceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587          228 KHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       228 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      ++|++++|.+.+..|..++.+++|++|++++   ....+..+..+++|+.|+++++.
T Consensus       350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence            9999999999877788999999999999998   33334457889999999998764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.70  E-value=1.3e-17  Score=153.00  Aligned_cols=176  Identities=16%  Similarity=0.147  Sum_probs=143.2

Q ss_pred             CCCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+..++.|+++.+.+... +..+.++++|++|++++|.      ...+++..|.++++|++|+++     +|.+.+..|
T Consensus        25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~-----~n~l~~~~~   93 (570)
T 2z63_A           25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILT-----GNPIQSLAL   93 (570)
T ss_dssp             SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC------CCEECTTTTTTCTTCCEEECT-----TCCCCEECT
T ss_pred             CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc------CCccCcccccCchhCCEEeCc-----CCcCCccCH
Confidence            4577899999999988774 4588999999999999998      445556778999999999999     888555556


Q ss_pred             ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcC-cCcccccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLE-ELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLT  249 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~  249 (285)
                      ..++.+.+|++|++++|.++.+|. .++++++|++|++++|.... .+|..++++++|++|++++|.+.+..|..++.+.
T Consensus        94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  173 (570)
T 2z63_A           94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  173 (570)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred             hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence            889999999999999999998875 68999999999999998444 4789999999999999999988877777888888


Q ss_pred             cC----Ccccccc---ccCCccccccCCcCCCceeccc
Q 043587          250 GL----RTLGEFT---KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       250 ~L----~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      +|    +.|++++   ....+..+..+ +|+.|++.+.
T Consensus       174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n  210 (570)
T 2z63_A          174 QMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNN  210 (570)
T ss_dssp             TCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred             ccchhhhhcccCCCCceecCHHHhccC-cceeEecccc
Confidence            88    7777776   22233344444 5777776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.70  E-value=4.5e-17  Score=135.86  Aligned_cols=153  Identities=24%  Similarity=0.290  Sum_probs=129.5

Q ss_pred             CCCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR  172 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~  172 (285)
                      ...++++.|.+..+.+... ..+..+++|++|++++|.      ...+++..|..+++|++|+++     +|.+.+..+.
T Consensus        60 ~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~~  127 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQ------LQSLPNGVFDKLTNLKELVLV-----ENQLQSLPDG  127 (272)
T ss_dssp             GGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSC------CCCCCTTTTTTCTTCCEEECT-----TSCCCCCCTT
T ss_pred             ccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCc------cCccChhHhcCCcCCCEEECC-----CCcCCccCHH
Confidence            3567899999999988764 478899999999999998      444456668899999999999     8886655566


Q ss_pred             cccccCCCceEecccccccccchh-hhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCCc
Q 043587          173 NIEKLVHLRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTG  250 (285)
Q Consensus       173 ~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~  250 (285)
                      .++.+++|++|++++|.++.+|+. ++.+++|++|++++|. +..+|. .++.+++|++|++++|.+.+..|..++.+++
T Consensus       128 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  206 (272)
T 3rfs_A          128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS  206 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence            688999999999999999988764 5789999999999998 555554 4689999999999999988777777899999


Q ss_pred             CCcccccc
Q 043587          251 LRTLGEFT  258 (285)
Q Consensus       251 L~~L~l~~  258 (285)
                      |+.|++.+
T Consensus       207 L~~L~l~~  214 (272)
T 3rfs_A          207 LQYIWLHD  214 (272)
T ss_dssp             CCEEECCS
T ss_pred             CCEEEccC
Confidence            99999987

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=2.9e-17  Score=151.80  Aligned_cols=86  Identities=13%  Similarity=0.218  Sum_probs=46.8

Q ss_pred             CCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           95 DEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ..+++.|.+..+.+...+ ..+.++++|++|++++|.      ...+++..|..+++|++|+++     +|.+.+..|..
T Consensus        98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~l~~~~~~~l~~L~~L~Ls-----~N~l~~~~~~~  166 (597)
T 3oja_B           98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND------LSSLPRGIFHNTPKLTTLSMS-----NNNLERIEDDT  166 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECC-----SSCCCBCCTTT
T ss_pred             CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC------CCCCCHHHhccCCCCCEEEee-----CCcCCCCChhh
Confidence            445666666666555533 234566666666666665      233334444556666666666     55544444445


Q ss_pred             ccccCCCceEeccccccc
Q 043587          174 IEKLVHLRYLSLSFQHIE  191 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~  191 (285)
                      ++.+++|++|++++|.++
T Consensus       167 ~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          167 FQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             TTTCTTCCEEECTTSCCS
T ss_pred             hhcCCcCcEEECcCCCCC
Confidence            555555666655555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.70  E-value=1.2e-16  Score=137.10  Aligned_cols=106  Identities=20%  Similarity=0.302  Sum_probs=71.1

Q ss_pred             CCCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ....+++.|.+..+.+... +..+.++++|++|++++|.      ...+.+..|..+++|++|+++     +|. ...+|
T Consensus        51 ~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~-----~n~-l~~l~  118 (332)
T 2ft3_A           51 EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK------ISKIHEKAFSPLRKLQKLYIS-----KNH-LVEIP  118 (332)
T ss_dssp             CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------CCEECGGGSTTCTTCCEEECC-----SSC-CCSCC
T ss_pred             CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc------cCccCHhHhhCcCCCCEEECC-----CCc-CCccC
Confidence            3456788888888887764 4478888899999998887      344446668888888888888     666 34555


Q ss_pred             ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCF  212 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~  212 (285)
                      ..+.  ++|++|++++|.++.+|. .+.++++|++|++++|.
T Consensus       119 ~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          119 PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred             cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence            4443  556666666666655543 24555556666655554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.70  E-value=3.7e-17  Score=143.29  Aligned_cols=86  Identities=13%  Similarity=0.218  Sum_probs=43.9

Q ss_pred             CCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           95 DEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ..+++.|.+..+.+... +..+.++++|++|++++|.      ...+++..|..+++|++|+++     +|.+.+..|..
T Consensus        92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~l~~~~~~~l~~L~~L~L~-----~n~l~~~~~~~  160 (390)
T 3o6n_A           92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND------LSSLPRGIFHNTPKLTTLSMS-----NNNLERIEDDT  160 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECC-----SSCCCBCCTTT
T ss_pred             CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc------cCcCCHHHhcCCCCCcEEECC-----CCccCccChhh
Confidence            44556666665555543 2335556666666666555      223333334555555555555     55533333444


Q ss_pred             ccccCCCceEeccccccc
Q 043587          174 IEKLVHLRYLSLSFQHIE  191 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~  191 (285)
                      +..+++|++|++++|.++
T Consensus       161 ~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          161 FQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             TSSCTTCCEEECCSSCCS
T ss_pred             ccCCCCCCEEECCCCcCC
Confidence            555555555555555444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=4.5e-17  Score=129.35  Aligned_cols=147  Identities=16%  Similarity=0.167  Sum_probs=102.3

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ..+++.+.+..+.+..++ .+..+++|++|++++|.      ...+ + .+..+++|++|+++     +|.+.+..|..+
T Consensus        43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~------~~~~-~-~l~~l~~L~~L~l~-----~n~l~~~~~~~l  108 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH------ATNY-N-PISGLSNLERLRIM-----GKDVTSDKIPNL  108 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC------CSCC-G-GGTTCTTCCEEEEE-----CTTCBGGGSCCC
T ss_pred             cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC------CCcc-h-hhhcCCCCCEEEeE-----CCccCcccChhh
Confidence            456777777777776555 57777778888887775      2222 2 36677778888887     777555566677


Q ss_pred             cccCCCceEecccccccc-cchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCc
Q 043587          175 EKLVHLRYLSLSFQHIEK-LPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRT  253 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~  253 (285)
                      +.+++|++|++++|.++. .|..++.+++|++|++++|..++.+| .+..+++|++|++++|.+. .++ .+..+++|++
T Consensus       109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~  185 (197)
T 4ezg_A          109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQ  185 (197)
T ss_dssp             TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCE
T ss_pred             cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCE
Confidence            777778888888777764 55667777778888887776566666 5777777888888777665 344 5667777777


Q ss_pred             ccccc
Q 043587          254 LGEFT  258 (285)
Q Consensus       254 L~l~~  258 (285)
                      |++++
T Consensus       186 L~l~~  190 (197)
T 4ezg_A          186 LYAFS  190 (197)
T ss_dssp             EEECB
T ss_pred             EEeeC
Confidence            77665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=3.5e-17  Score=151.20  Aligned_cols=173  Identities=15%  Similarity=0.092  Sum_probs=108.8

Q ss_pred             CCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc-
Q 043587           95 DEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR-  172 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~-  172 (285)
                      ..+++.|.+..+.+...+ ..+..+++|++|++++|.      ...+++..|.++++|++|+++     +|.+. .+|. 
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~-----~n~l~-~l~~~  141 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA------IRYLPPHVFQNVPLLTVLVLE-----RNDLS-SLPRG  141 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECC-----SSCCC-CCCTT
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc------CCCCCHHHHcCCCCCCEEEee-----CCCCC-CCCHH
Confidence            456777777777766633 367777788888887776      334455557777888888887     77733 4443 


Q ss_pred             cccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCc---------------------------------
Q 043587          173 NIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELP---------------------------------  218 (285)
Q Consensus       173 ~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp---------------------------------  218 (285)
                      .++.+++|++|++++|.++.+++ .++++++|++|++++|. +..+|                                 
T Consensus       142 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~  220 (597)
T 3oja_B          142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH  220 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCS
T ss_pred             HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCccccccCCchhheeeccC
Confidence            35778888888888888776654 57777777777777776 32221                                 


Q ss_pred             ---------------------------ccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccC
Q 043587          219 ---------------------------KGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNL  269 (285)
Q Consensus       219 ---------------------------~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l  269 (285)
                                                 ..++.+++|++|++++|.+.+..|..++.+++|+.|++++  -...+..+..+
T Consensus       221 n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l  300 (597)
T 3oja_B          221 NSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI  300 (597)
T ss_dssp             SCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCC
T ss_pred             CcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccC
Confidence                                       1244555666666666666555566666666666666665  12223334445


Q ss_pred             CcCCCceeccc
Q 043587          270 EHLQICGIRRL  280 (285)
Q Consensus       270 ~~L~~L~i~~~  280 (285)
                      ++|+.|+++++
T Consensus       301 ~~L~~L~Ls~N  311 (597)
T 3oja_B          301 PTLKVLDLSHN  311 (597)
T ss_dssp             TTCCEEECCSS
T ss_pred             CCCcEEECCCC
Confidence            55555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.70  E-value=2.3e-17  Score=140.35  Aligned_cols=172  Identities=17%  Similarity=0.084  Sum_probs=94.2

Q ss_pred             CCceeEEEEEecCCcccccchhcc-----ccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRI-----KRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPE  169 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  169 (285)
                      ..+++.|.+..+.+...+..+..+     ++|++|++++|.      ...+++..|..+++|++|+++     +|++.+.
T Consensus       120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~------l~~~~~~~~~~l~~L~~L~Ls-----~N~l~~~  188 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH------SLNFSCEQVRVFPALSTLDLS-----DNPELGE  188 (312)
T ss_dssp             SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS------CCCCCTTTCCCCSSCCEEECC-----SCTTCHH
T ss_pred             CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC------CccchHHHhccCCCCCEEECC-----CCCcCcc
Confidence            345556666655555544445554     556666666655      233333445566666666666     5554333


Q ss_pred             --ccccc--cccCCCceEecccccccccc---hh-hhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCcc
Q 043587          170 --IPRNI--EKLVHLRYLSLSFQHIEKLP---ET-LCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVRY  240 (285)
Q Consensus       170 --~p~~i--~~l~~L~~L~l~~~~l~~lp---~~-i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~  240 (285)
                        +|..+  +.+++|++|++++|.++.++   .. +.++++|++|++++|...+..| ..+..+++|++|++++|.+. .
T Consensus       189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~  267 (312)
T 1wwl_A          189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q  267 (312)
T ss_dssp             HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-S
T ss_pred             hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-h
Confidence              22233  55666666666666665332   22 2355666666666666333332 23445666777777666655 5


Q ss_pred             cCCCCCCCCcCCcccccc-ccCCccccccCCcCCCceeccc
Q 043587          241 MPVGIGRLTGLRTLGEFT-KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       241 ~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      +|..+.  ++|++|++++ .-.....+..+++|+.|++++.
T Consensus       268 ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          268 VPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGN  306 (312)
T ss_dssp             CCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTC
T ss_pred             hhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccCC
Confidence            665555  6667777666 1111122667777777777654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.70  E-value=8.7e-17  Score=149.59  Aligned_cols=170  Identities=19%  Similarity=0.181  Sum_probs=104.3

Q ss_pred             ceeEEEEEecCCcc-cccchh-------ccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCC
Q 043587           97 KVRHLMLIIGEGAI-FPVSTR-------RIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTP  168 (285)
Q Consensus        97 ~l~~L~l~~~~~~~-~~~~~~-------~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  168 (285)
                      +++.+.+..+.+.. .+..+.       .+++|++|++++|.      ...+++..+..+++|++|+++     +|.+. 
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~------l~~lp~~~~~~l~~L~~L~Ls-----~N~l~-  470 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ------ISKFPKELFSTGSPLSSINLM-----GNMLT-  470 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC------CCSCCTHHHHTTCCCSEEECC-----SSCCS-
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc------cCcCCHHHHccCCCCCEEECC-----CCCCC-
Confidence            34555555554433 233333       44566666666665      234445555667777777777     66633 


Q ss_pred             cccccccc--------cCCCceEecccccccccchhhh--cCCCccEEecCCCCCcCcCcccccccCCCceeec------
Q 043587          169 EIPRNIEK--------LVHLRYLSLSFQHIEKLPETLC--ELYNLETLDISGCFDLEELPKGIGKLVNMKHLLN------  232 (285)
Q Consensus       169 ~~p~~i~~--------l~~L~~L~l~~~~l~~lp~~i~--~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l------  232 (285)
                      .+|..+..        +++|++|++++|.++.+|..+.  .+++|+.|++++|+ +..+|..++.+++|++|++      
T Consensus       471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~l  549 (636)
T 4eco_A          471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDA  549 (636)
T ss_dssp             BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCT
T ss_pred             CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCccc
Confidence            55544332        1267777777777777777665  77777777777776 4447777777777777777      


Q ss_pred             CCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587          233 SRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       233 ~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      ++|.+.+.+|..++.+++|++|++++  -...+..+.  ++|+.|++++++
T Consensus       550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~  598 (636)
T 4eco_A          550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNP  598 (636)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCT
T ss_pred             ccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCC
Confidence            34556667777777777777777776  333333333  567777776653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=1.1e-17  Score=143.49  Aligned_cols=176  Identities=16%  Similarity=0.175  Sum_probs=143.1

Q ss_pred             CCCceeEEEEEecCCcc--cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccc-cCCC-c
Q 043587           94 LDEKVRHLMLIIGEGAI--FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRS-SLTP-E  169 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~-~  169 (285)
                      ...+++.|++..+.+..  .+..+..+++|++|++.+|.     +... .+..+..+++|++|+++     +| .+.+ .
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-----l~~~-~~~~l~~~~~L~~L~L~-----~~~~l~~~~  159 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-----LSDP-IVNTLAKNSNLVRLNLS-----GCSGFSEFA  159 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-----CCHH-HHHHHTTCTTCSEEECT-----TCBSCCHHH
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-----cCHH-HHHHHhcCCCCCEEECC-----CCCCCCHHH
Confidence            45789999999887653  56678899999999999997     3444 46668899999999999     87 4333 3


Q ss_pred             ccccccccCCCceEecccc-cccc--cchhhhcCC-CccEEecCCCC-Cc--CcCcccccccCCCceeecCCCC-CCccc
Q 043587          170 IPRNIEKLVHLRYLSLSFQ-HIEK--LPETLCELY-NLETLDISGCF-DL--EELPKGIGKLVNMKHLLNSRTS-SVRYM  241 (285)
Q Consensus       170 ~p~~i~~l~~L~~L~l~~~-~l~~--lp~~i~~l~-~L~~L~l~~~~-~~--~~lp~~l~~l~~L~~L~l~~~~-~~~~~  241 (285)
                      ++..+..+++|++|++++| .++.  ++..+..++ +|++|++++|. .+  ..+|..+..+++|++|++++|. +....
T Consensus       160 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~  239 (336)
T 2ast_B          160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC  239 (336)
T ss_dssp             HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred             HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH
Confidence            6777888999999999999 7874  677788999 99999999995 13  4567778899999999999998 55677


Q ss_pred             CCCCCCCCcCCcccccc----ccCCccccccCCcCCCceeccc
Q 043587          242 PVGIGRLTGLRTLGEFT----KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       242 p~~~~~l~~L~~L~l~~----~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      +..+..+++|++|++++    ....+..+.++++|+.|+++++
T Consensus       240 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          240 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            77899999999999988    2233346888999999999987

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=1.4e-16  Score=126.54  Aligned_cols=152  Identities=13%  Similarity=0.115  Sum_probs=126.5

Q ss_pred             chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccc-
Q 043587          114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK-  192 (285)
Q Consensus       114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~-  192 (285)
                      ....+++|+.|++++|.      ...+ + .+..+++|++|+++     +|. ...+ ..+..+++|++|++++|.++. 
T Consensus        39 ~~~~l~~L~~L~l~~n~------i~~l-~-~l~~l~~L~~L~l~-----~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~  103 (197)
T 4ezg_A           39 TEAQMNSLTYITLANIN------VTDL-T-GIEYAHNIKDLTIN-----NIH-ATNY-NPISGLSNLERLRIMGKDVTSD  103 (197)
T ss_dssp             BHHHHHTCCEEEEESSC------CSCC-T-TGGGCTTCSEEEEE-----SCC-CSCC-GGGTTCTTCCEEEEECTTCBGG
T ss_pred             ChhhcCCccEEeccCCC------ccCh-H-HHhcCCCCCEEEcc-----CCC-CCcc-hhhhcCCCCCEEEeECCccCcc
Confidence            44788999999999998      4454 3 38899999999999     876 4444 478899999999999999885 


Q ss_pred             cchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc-ccCCccccccCCc
Q 043587          193 LPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-KACRLESLKNLEH  271 (285)
Q Consensus       193 lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~  271 (285)
                      .|..++++++|++|++++|......|..++.+++|++|++++|...+.+| .+..+++|++|++++ .-..+..+..+++
T Consensus       104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~  182 (197)
T 4ezg_A          104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPK  182 (197)
T ss_dssp             GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSS
T ss_pred             cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCC
Confidence            67789999999999999999665678889999999999999998455776 699999999999998 3333448899999


Q ss_pred             CCCceecccC
Q 043587          272 LQICGIRRLG  281 (285)
Q Consensus       272 L~~L~i~~~~  281 (285)
                      |+.|++++..
T Consensus       183 L~~L~l~~N~  192 (197)
T 4ezg_A          183 LNQLYAFSQT  192 (197)
T ss_dssp             CCEEEECBC-
T ss_pred             CCEEEeeCcc
Confidence            9999998653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.69  E-value=4.6e-17  Score=156.09  Aligned_cols=177  Identities=20%  Similarity=0.134  Sum_probs=145.5

Q ss_pred             CCCceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587           94 LDEKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR  172 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~  172 (285)
                      .+.+++.|+++.+.+.. .+..+.++++|++|++++|.     ....+.+..|.++++|++|+|+     +|.+.+..|.
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~-----~~~~i~~~~f~~L~~L~~L~Ls-----~N~l~~~~p~   91 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY-----TPLTIDKEAFRNLPNLRILDLG-----SSKIYFLHPD   91 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC-----CCCEECTTTTSSCTTCCEEECT-----TCCCCEECTT
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC-----CccccCHHHhcCCCCCCEEECC-----CCcCcccCHh
Confidence            67899999999998877 56789999999999999995     3555557779999999999999     8886666789


Q ss_pred             cccccCCCceEecccccccc-cchh--hhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCcccCCCCCCC
Q 043587          173 NIEKLVHLRYLSLSFQHIEK-LPET--LCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVRYMPVGIGRL  248 (285)
Q Consensus       173 ~i~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l  248 (285)
                      .++.+.+|++|++++|.++. +|..  ++++++|++|++++|...+..| ..++++++|++|++++|.+.+..|..++.+
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            99999999999999999875 5554  8899999999999998544433 578999999999999999888788888877


Q ss_pred             --CcCCcccccc---ccCCccccccCCc------CCCceeccc
Q 043587          249 --TGLRTLGEFT---KACRLESLKNLEH------LQICGIRRL  280 (285)
Q Consensus       249 --~~L~~L~l~~---~~~~~~~l~~l~~------L~~L~i~~~  280 (285)
                        ++|+.|++..   ....+..++.+++      |+.|+++++
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  214 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN  214 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence              7899998887   3334444444443      888888776

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=2.2e-17  Score=135.07  Aligned_cols=152  Identities=13%  Similarity=0.142  Sum_probs=68.6

Q ss_pred             CceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeeccccccc-ccCCCccccc
Q 043587           96 EKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSR-SSLTPEIPRN  173 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~p~~  173 (285)
                      .+++.+.+..+.+..++. .+.++++|++|++++|.     ....+++..|.++++|++|+++     + |.+.+..+..
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-----~l~~i~~~~f~~l~~L~~L~l~-----~~n~l~~i~~~~  100 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-----TLQQLESHSFYNLSKVTHIEIR-----NTRNLTYIDPDA  100 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS-----SCCEECTTTEESCTTCCEEEEE-----EETTCCEECTTS
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC-----CcceeCHhHcCCCcCCcEEECC-----CCCCeeEcCHHH
Confidence            345555555555544332 44455555555555552     0222223334445555555554     4 3322212233


Q ss_pred             ccccCCCceEecccccccccch---------------------------hhhcCCCcc-EEecCCCCCcCcCcccccccC
Q 043587          174 IEKLVHLRYLSLSFQHIEKLPE---------------------------TLCELYNLE-TLDISGCFDLEELPKGIGKLV  225 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~lp~---------------------------~i~~l~~L~-~L~l~~~~~~~~lp~~l~~l~  225 (285)
                      +..+++|++|++++|.++.+|.                           .+.++++|+ .|++++|. +..+|......+
T Consensus       101 f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~  179 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGT  179 (239)
T ss_dssp             EECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTC
T ss_pred             hCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCC
Confidence            4444445555555444444443                           244445555 55555554 334444332334


Q ss_pred             CCceeecCCCC-CCcccCCCCCCC-CcCCcccccc
Q 043587          226 NMKHLLNSRTS-SVRYMPVGIGRL-TGLRTLGEFT  258 (285)
Q Consensus       226 ~L~~L~l~~~~-~~~~~p~~~~~l-~~L~~L~l~~  258 (285)
                      +|++|++++|+ +.+..+..+..+ ++|++|++++
T Consensus       180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence            55555555553 332223344555 5555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.69  E-value=3.5e-17  Score=132.27  Aligned_cols=144  Identities=15%  Similarity=0.113  Sum_probs=85.1

Q ss_pred             EEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCc
Q 043587          102 MLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLR  181 (285)
Q Consensus       102 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~  181 (285)
                      .+..+.+..+|..+.  ++++.|++.+|.      ...+++..|..+++|++|+++     +|.+.+..|..+..+++|+
T Consensus        17 ~c~~~~l~~iP~~l~--~~l~~L~l~~n~------i~~i~~~~~~~l~~L~~L~Ls-----~N~i~~~~~~~~~~l~~L~   83 (220)
T 2v9t_B           17 DCRGKGLTEIPTNLP--ETITEIRLEQNT------IKVIPPGAFSPYKKLRRIDLS-----NNQISELAPDAFQGLRSLN   83 (220)
T ss_dssp             ECTTSCCSSCCSSCC--TTCCEEECCSSC------CCEECTTSSTTCTTCCEEECC-----SSCCCEECTTTTTTCSSCC
T ss_pred             EcCCCCcCcCCCccC--cCCCEEECCCCc------CCCcCHhHhhCCCCCCEEECC-----CCcCCCcCHHHhhCCcCCC
Confidence            333344443443332  466666666665      333344446666666666666     6664444456666666666


Q ss_pred             eEecccccccccchh-hhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587          182 YLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       182 ~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  258 (285)
                      +|++++|.++.+|.. +.++++|++|++++|......|..+..+++|++|++++|.+.+..+..+..+++|++|++.+
T Consensus        84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B           84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence            777766666666654 35566666677666663333345566666667777666666654444566666666666665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.69  E-value=6.7e-17  Score=151.41  Aligned_cols=174  Identities=19%  Similarity=0.164  Sum_probs=139.0

Q ss_pred             CCCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+.++++|+++.+.+...+. .+.++++|++|++++|.      ...+.+..|.++++|++|+++     +|.+. .+|
T Consensus        22 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~-----~n~l~-~l~   89 (680)
T 1ziw_A           22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT------ISKLEPELCQKLPMLKVLNLQ-----HNELS-QLS   89 (680)
T ss_dssp             CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC------CCCCCTTHHHHCTTCCEEECC-----SSCCC-CCC
T ss_pred             ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc------cCccCHHHHhcccCcCEEECC-----CCccC-ccC
Confidence            456799999999998887554 68999999999999998      444457779999999999999     88844 555


Q ss_pred             -ccccccCCCceEecccccccccc-hhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCC--C
Q 043587          172 -RNIEKLVHLRYLSLSFQHIEKLP-ETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIG--R  247 (285)
Q Consensus       172 -~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~--~  247 (285)
                       ..++.+++|++|++++|.++.+| ..++++++|++|++++|...+..|..++++++|++|++++|.+.+..|..++  .
T Consensus        90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  169 (680)
T 1ziw_A           90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA  169 (680)
T ss_dssp             TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred             hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence             46999999999999999998887 5789999999999999986666677789999999999999988765554443  5


Q ss_pred             CCcCCcccccc---ccCCccccccCCcCCCceec
Q 043587          248 LTGLRTLGEFT---KACRLESLKNLEHLQICGIR  278 (285)
Q Consensus       248 l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~  278 (285)
                      +++|++|++++   ....+..+..+++|+.|++.
T Consensus       170 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  203 (680)
T 1ziw_A          170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN  203 (680)
T ss_dssp             TCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred             cccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence            68999999987   33344555555555544443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=6.8e-18  Score=144.84  Aligned_cols=178  Identities=16%  Similarity=0.095  Sum_probs=147.4

Q ss_pred             CceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc
Q 043587           96 EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE  175 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~  175 (285)
                      ..++.+.+..+.+...+..+..+++|++|++++|.     +.....+..+..+++|++|+++     +|.+.+..|..++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-----l~~~~~~~~~~~~~~L~~L~L~-----~~~l~~~~~~~l~  139 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-----IEVSTLHGILSQCSKLQNLSLE-----GLRLSDPIVNTLA  139 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-----ECHHHHHHHHTTBCCCSEEECT-----TCBCCHHHHHHHT
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCC-----cCHHHHHHHHhhCCCCCEEeCc-----CcccCHHHHHHHh
Confidence            56777888777666655567789999999999997     4444357778999999999999     8886667788899


Q ss_pred             ccCCCceEecccc-ccc--ccchhhhcCCCccEEecCCC-CCcCc--CcccccccC-CCceeecCCCC--CC-cccCCCC
Q 043587          176 KLVHLRYLSLSFQ-HIE--KLPETLCELYNLETLDISGC-FDLEE--LPKGIGKLV-NMKHLLNSRTS--SV-RYMPVGI  245 (285)
Q Consensus       176 ~l~~L~~L~l~~~-~l~--~lp~~i~~l~~L~~L~l~~~-~~~~~--lp~~l~~l~-~L~~L~l~~~~--~~-~~~p~~~  245 (285)
                      .+++|++|++++| .++  .+|..+.++++|++|++++| . ++.  +|..+..++ +|++|++++|.  +. +.+|..+
T Consensus       140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~  218 (336)
T 2ast_B          140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD-FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV  218 (336)
T ss_dssp             TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT-CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred             cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC-cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence            9999999999999 577  47777889999999999999 6 553  677789999 99999999993  44 4567778


Q ss_pred             CCCCcCCcccccc----ccCCccccccCCcCCCceecccCCCC
Q 043587          246 GRLTGLRTLGEFT----KACRLESLKNLEHLQICGIRRLGYVS  284 (285)
Q Consensus       246 ~~l~~L~~L~l~~----~~~~~~~l~~l~~L~~L~i~~~~~~~  284 (285)
                      +.+++|++|++++    ....+..+..+++|+.|+++++.++.
T Consensus       219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  261 (336)
T 2ast_B          219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  261 (336)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence            8899999999998    24667788999999999999987654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.69  E-value=2.4e-17  Score=142.55  Aligned_cols=167  Identities=17%  Similarity=0.150  Sum_probs=138.4

Q ss_pred             EEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCC
Q 043587          101 LMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHL  180 (285)
Q Consensus       101 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L  180 (285)
                      .+...+....+|..+.  ++|++|++++|.      ...+++..|..+++|++|+++     +|.+.+..|..++.+++|
T Consensus        36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~------i~~~~~~~~~~l~~L~~L~L~-----~n~l~~~~~~~~~~l~~L  102 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNR------ITYISNSDLQRCVNLQALVLT-----SNGINTIEEDSFSSLGSL  102 (353)
T ss_dssp             EECCSTTCSSCCTTCC--TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECT-----TSCCCEECTTTTTTCTTC
T ss_pred             eeCCCCCccccccccc--ccCcEEECCCCc------CcccCHHHhccCCCCCEEECC-----CCccCccCHhhcCCCCCC
Confidence            4555666666666544  589999999998      445556568999999999999     888555557789999999


Q ss_pred             ceEecccccccccchh-hhcCCCccEEecCCCCCcCcCcc--cccccCCCceeecCCCC-CCcccCCCCCCCCcCCcccc
Q 043587          181 RYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPK--GIGKLVNMKHLLNSRTS-SVRYMPVGIGRLTGLRTLGE  256 (285)
Q Consensus       181 ~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l  256 (285)
                      ++|++++|.++.+|.. ++++++|++|++++|. ++.+|.  .+..+++|++|++++|. +....|..++.+++|++|++
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  181 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI  181 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence            9999999999999876 7899999999999998 777876  68899999999999995 44444678999999999999


Q ss_pred             cc---ccCCccccccCCcCCCceecccC
Q 043587          257 FT---KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       257 ~~---~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      ++   ....+..+..+++|+.|+++++.
T Consensus       182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          182 DASDLQSYEPKSLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred             CCCCcCccCHHHHhccccCCeecCCCCc
Confidence            88   44457789999999999998764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.69  E-value=1.6e-16  Score=134.98  Aligned_cols=173  Identities=16%  Similarity=0.062  Sum_probs=113.0

Q ss_pred             CCceeEEEEEecCCcccc-----cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCc
Q 043587           95 DEKVRHLMLIIGEGAIFP-----VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPE  169 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  169 (285)
                      ..+++.|.+..+.+....     ..+..+++|++|++++|.      ...+++..|..+++|++|+++     +|++.+.
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls-----~N~l~~~  184 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH------SPAFSCEQVRAFPALTSLDLS-----DNPGLGE  184 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS------SCCCCTTSCCCCTTCCEEECC-----SCTTCHH
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC------cchhhHHHhccCCCCCEEECC-----CCCCccc
Confidence            456777777777665411     223357777777777776      333345556777778888877     6664432


Q ss_pred             --cc--ccccccCCCceEecccccccccchh----hhcCCCccEEecCCCCCcCcCccccccc---CCCceeecCCCCCC
Q 043587          170 --IP--RNIEKLVHLRYLSLSFQHIEKLPET----LCELYNLETLDISGCFDLEELPKGIGKL---VNMKHLLNSRTSSV  238 (285)
Q Consensus       170 --~p--~~i~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~~~lp~~l~~l---~~L~~L~l~~~~~~  238 (285)
                        ++  ..++.+++|++|++++|.++.+|..    ++.+++|++|++++|......|..++.+   ++|++|++++|.+.
T Consensus       185 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          185 RGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             HHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             hhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence              22  2235677788888888877665542    4567888888888887444447666665   57888888888776


Q ss_pred             cccCCCCCCCCcCCcccccc-ccCCccccccCCcCCCceecccC
Q 043587          239 RYMPVGIGRLTGLRTLGEFT-KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       239 ~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                       .+|..+.  ++|++|++++ .-..+..+..+++|+.|++++..
T Consensus       265 -~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          265 -QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             -SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred             -chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence             6676664  6888888877 22222336777888888877653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=5.8e-17  Score=132.57  Aligned_cols=147  Identities=16%  Similarity=0.100  Sum_probs=104.4

Q ss_pred             CCceeEEEEEe-cCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccc---eeeecccccccc-cCCC
Q 043587           95 DEKVRHLMLII-GEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLR---ALDFCESYHSRS-SLTP  168 (285)
Q Consensus        95 ~~~l~~L~l~~-~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~---~L~L~~~~~~~~-~~~~  168 (285)
                      ..+++.+.+.. +.+..++ ..+.++++|++|++.+|.      ...+ |. |..+++|+   +|+++     +| . ..
T Consensus        79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~------l~~l-p~-~~~l~~L~~L~~L~l~-----~N~~-l~  144 (239)
T 2xwt_C           79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG------LKMF-PD-LTKVYSTDIFFILEIT-----DNPY-MT  144 (239)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC------CCSC-CC-CTTCCBCCSEEEEEEE-----SCTT-CC
T ss_pred             CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC------Cccc-cc-cccccccccccEEECC-----CCcc-hh
Confidence            44666666665 5555533 355666667777776665      2222 22 55566666   77777     77 6 44


Q ss_pred             ccc-ccccccCCCc-eEecccccccccchhhhcCCCccEEecCCCCCcCcCc-cccccc-CCCceeecCCCCCCcccCCC
Q 043587          169 EIP-RNIEKLVHLR-YLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELP-KGIGKL-VNMKHLLNSRTSSVRYMPVG  244 (285)
Q Consensus       169 ~~p-~~i~~l~~L~-~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l-~~L~~L~l~~~~~~~~~p~~  244 (285)
                      .+| ..+..+++|+ +|++++|.++.+|......++|+.|++++|+.++.+| ..+..+ ++|++|++++|++. .+|..
T Consensus       145 ~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~  223 (239)
T 2xwt_C          145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK  223 (239)
T ss_dssp             EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT
T ss_pred             hcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh
Confidence            444 4588899999 9999999999998876666899999999995366665 567888 99999999999876 56654


Q ss_pred             CCCCCcCCcccccc
Q 043587          245 IGRLTGLRTLGEFT  258 (285)
Q Consensus       245 ~~~l~~L~~L~l~~  258 (285)
                        .+++|+.|.+.+
T Consensus       224 --~~~~L~~L~l~~  235 (239)
T 2xwt_C          224 --GLEHLKELIARN  235 (239)
T ss_dssp             --TCTTCSEEECTT
T ss_pred             --HhccCceeeccC
Confidence              566777776654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=1e-16  Score=147.68  Aligned_cols=164  Identities=17%  Similarity=0.264  Sum_probs=86.0

Q ss_pred             CceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc
Q 043587           96 EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE  175 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~  175 (285)
                      ..++.|.+..+.+..++ .+..+++|+.|++++|.      ...+++  +..+++|+.|+|+     +|. +..+| .+.
T Consensus        43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~------l~~~~~--l~~l~~L~~L~Ls-----~N~-l~~l~-~l~  106 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK------LTDIKP--LTNLKNLGWLFLD-----ENK-IKDLS-SLK  106 (605)
T ss_dssp             TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC------CCCCGG--GGGCTTCCEEECC-----SSC-CCCCT-TST
T ss_pred             CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC------CCCChh--hccCCCCCEEECc-----CCC-CCCCh-hhc
Confidence            34555555555444332 35555666666666655      222222  5556666666665     555 23333 455


Q ss_pred             ccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCccc
Q 043587          176 KLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLG  255 (285)
Q Consensus       176 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  255 (285)
                      .+++|++|++++|.+..+| .+..+++|+.|++++|. +..+ ..++.+++|++|++++|.+.+..|  +..+++|+.|+
T Consensus       107 ~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~  181 (605)
T 1m9s_A          107 DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  181 (605)
T ss_dssp             TCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             cCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE
Confidence            5566666666666655543 35555666666666655 3334 345556666666666665543333  55566666666


Q ss_pred             ccc-ccCCccccccCCcCCCceeccc
Q 043587          256 EFT-KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       256 l~~-~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      +++ ....+..+..+++|+.|+++++
T Consensus       182 Ls~N~i~~l~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          182 LSKNHISDLRALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             CCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred             CcCCCCCCChHHccCCCCCEEEccCC
Confidence            555 2222234555555555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.68  E-value=5.4e-17  Score=139.22  Aligned_cols=79  Identities=19%  Similarity=0.149  Sum_probs=38.8

Q ss_pred             CCceEecccccccccc-hhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCccccc
Q 043587          179 HLRYLSLSFQHIEKLP-ETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEF  257 (285)
Q Consensus       179 ~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  257 (285)
                      +|++|++++|.++.++ ..+.++++|+.|++++|......|..++.+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence            4444444444444333 34445555555555555422222234555555555555555444 455555555555555555


Q ss_pred             c
Q 043587          258 T  258 (285)
Q Consensus       258 ~  258 (285)
                      +
T Consensus       273 ~  273 (332)
T 2ft3_A          273 T  273 (332)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=1e-16  Score=130.29  Aligned_cols=127  Identities=23%  Similarity=0.332  Sum_probs=59.5

Q ss_pred             ccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc-ccccccCCCceEecccccccccchh-
Q 043587          119 KRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP-RNIEKLVHLRYLSLSFQHIEKLPET-  196 (285)
Q Consensus       119 ~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p-~~i~~l~~L~~L~l~~~~l~~lp~~-  196 (285)
                      ++|++|++++|.      ...+.+..|..+++|++|+++     +|++ +.+| ..+..+++|++|++++|.++.+|.. 
T Consensus        40 ~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~-----~N~l-~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  107 (229)
T 3e6j_A           40 TNAQILYLHDNQ------ITKLEPGVFDSLINLKELYLG-----SNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAV  107 (229)
T ss_dssp             TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECC-----SSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCEEEcCCCc------cCccCHHHhhCccCCcEEECC-----CCCC-CCcChhhcccCCCcCEEECCCCcCCccChhH
Confidence            445555555554      222223334445555555555     4442 2222 3334455555555555555544432 


Q ss_pred             hhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587          197 LCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       197 i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  258 (285)
                      +..+++|++|++++|. +..+|..+..+++|++|++++|.+.+..+..+..+++|+.|++.+
T Consensus       108 ~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          108 FDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             TTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             hCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            3445555555555554 444555555555555555555544432223344555555555444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.67  E-value=1.5e-16  Score=135.34  Aligned_cols=173  Identities=15%  Similarity=0.014  Sum_probs=137.3

Q ss_pred             CCCceeEEEEEecCCcc-cccch--hccccccEEeecCCCCCCCCchhhHHHHHHhcC-----Cccceeeeccccccccc
Q 043587           94 LDEKVRHLMLIIGEGAI-FPVST--RRIKRMRSLLIDGGRSDHSSLNGEILEELFREL-----TSLRALDFCESYHSRSS  165 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~-~~~~~--~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~  165 (285)
                      ...+++.|.+..+.+.. .+..+  ..+++|++|++++|.      ...+ +..+..+     ++|++|+++     +|+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~------l~~~-~~~~~~l~~~~~~~L~~L~L~-----~N~  160 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS------WATR-DAWLAELQQWLKPGLKVLSIA-----QAH  160 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB------CSSS-SSHHHHHHTTCCTTCCEEEEE-----SCS
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC------Ccch-hHHHHHHHHhhcCCCcEEEee-----CCC
Confidence            36789999999998875 66655  899999999999998      3333 3445555     899999999     999


Q ss_pred             CCCcccccccccCCCceEecccccccc---cchhh--hcCCCccEEecCCCCCcCcC---ccc-ccccCCCceeecCCCC
Q 043587          166 LTPEIPRNIEKLVHLRYLSLSFQHIEK---LPETL--CELYNLETLDISGCFDLEEL---PKG-IGKLVNMKHLLNSRTS  236 (285)
Q Consensus       166 ~~~~~p~~i~~l~~L~~L~l~~~~l~~---lp~~i--~~l~~L~~L~l~~~~~~~~l---p~~-l~~l~~L~~L~l~~~~  236 (285)
                      +.+..|..++.+++|++|++++|.+..   +|..+  +.+++|++|++++|. +..+   +.. +..+++|++|++++|.
T Consensus       161 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred             CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc
Confidence            666666899999999999999999653   35555  889999999999998 6533   333 3578999999999999


Q ss_pred             CCcccC-CCCCCCCcCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587          237 SVRYMP-VGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       237 ~~~~~p-~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      +.+..| ..+..+++|++|++++  -...+..+.  ++|+.|+++++.
T Consensus       240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~  285 (312)
T 1wwl_A          240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR  285 (312)
T ss_dssp             CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC
T ss_pred             CCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC
Confidence            887665 4567789999999998  335555555  789999888753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.67  E-value=6e-17  Score=149.73  Aligned_cols=175  Identities=17%  Similarity=0.162  Sum_probs=106.7

Q ss_pred             CCCceeEEEEEecCCccc---ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc
Q 043587           94 LDEKVRHLMLIIGEGAIF---PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI  170 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~  170 (285)
                      ...+++.+.+..+.+...   +..+.++++|++|++.+|.      ...+.+..|..+++|+.|+++     +|.+.+..
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~  416 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE------PLSLKTEAFKECPQLELLDLA-----FTRLKVKD  416 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS------CEEECTTTTTTCTTCSEEECT-----TCCEECCT
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc------CCcCCHHHhcCCccCCeEECC-----CCcCCCcc
Confidence            456778888887776653   4567777888888887776      333345556677777777777     66644443


Q ss_pred             cc-cccccCCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCc---CcccccccCCCceeecCCCCCCcccCCCC
Q 043587          171 PR-NIEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEE---LPKGIGKLVNMKHLLNSRTSSVRYMPVGI  245 (285)
Q Consensus       171 p~-~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~---lp~~l~~l~~L~~L~l~~~~~~~~~p~~~  245 (285)
                      |. .+..+++|++|++++|.++.. |..++.+++|++|++++|...+.   .+..+..+++|++|++++|.+.+..|..+
T Consensus       417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  496 (606)
T 3t6q_A          417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF  496 (606)
T ss_dssp             TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred             cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence            32 356666666666666665543 34556666666666666663321   12345666666666666666665556666


Q ss_pred             CCCCcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587          246 GRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       246 ~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      +.+++|++|++++   ....+..+..++.| .|+++++
T Consensus       497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N  533 (606)
T 3t6q_A          497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN  533 (606)
T ss_dssp             TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred             ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence            6666666666665   33344455555555 5555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.67  E-value=2.4e-16  Score=141.62  Aligned_cols=177  Identities=13%  Similarity=0.063  Sum_probs=110.7

Q ss_pred             CCCceeEEEEEecCCcc-cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587           94 LDEKVRHLMLIIGEGAI-FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR  172 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~  172 (285)
                      ...+++.|.+..+.+.. .+..+.++++|+.|++.+|.      ...+++..+..+++|+.|+++     +|.+.+..+.
T Consensus       126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~l~~l~~L~~L~l~-----~n~i~~~~~~  194 (477)
T 2id5_A          126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN------LTSIPTEALSHLHGLIVLRLR-----HLNINAIRDY  194 (477)
T ss_dssp             TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC------CSSCCHHHHTTCTTCCEEEEE-----SCCCCEECTT
T ss_pred             ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc------CcccChhHhcccCCCcEEeCC-----CCcCcEeChh
Confidence            34567777777766655 34466677777777777776      333445556667777777776     4443222233


Q ss_pred             cccccC------------------------CCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCC
Q 043587          173 NIEKLV------------------------HLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNM  227 (285)
Q Consensus       173 ~i~~l~------------------------~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L  227 (285)
                      .+..++                        +|++|++++|.++.+|. .+..+++|+.|++++|......+..+..+++|
T Consensus       195 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  274 (477)
T 2id5_A          195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL  274 (477)
T ss_dssp             CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC
T ss_pred             hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccC
Confidence            333343                        55555666666666663 46677777777777776333334456777777


Q ss_pred             ceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587          228 KHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       228 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      ++|++++|.+.+..|..+..+++|+.|++++   .......+..+++|+.|++.+..
T Consensus       275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence            7777777777766677777777777777776   33333446677777777776543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.67  E-value=2.3e-16  Score=126.27  Aligned_cols=160  Identities=19%  Similarity=0.273  Sum_probs=124.7

Q ss_pred             CCCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ....+++.|.+..+.+...+. .+..+++|++|++.+|.      ...+++..|..+++|++|+++     +|.+.+..+
T Consensus        25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~l~~L~~L~Ls-----~n~l~~~~~   93 (208)
T 2o6s_A           25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK------LQSLPNGVFNKLTSLTYLNLS-----TNQLQSLPN   93 (208)
T ss_dssp             CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECC-----SSCCCCCCT
T ss_pred             CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc------cCccChhhcCCCCCcCEEECC-----CCcCCccCH
Confidence            456689999999998877554 46889999999999997      445456667889999999999     888554444


Q ss_pred             ccccccCCCceEecccccccccchh-hhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLT  249 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~  249 (285)
                      ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|. .+..+++|++|++++|++.       +.++
T Consensus        94 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~  165 (208)
T 2o6s_A           94 GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCP  165 (208)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-------CCTT
T ss_pred             hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-------cCCC
Confidence            5578899999999999999888764 6789999999999998 555555 4788999999999998654       3455


Q ss_pred             cCCcccccc---ccCCccccccCCc
Q 043587          250 GLRTLGEFT---KACRLESLKNLEH  271 (285)
Q Consensus       250 ~L~~L~l~~---~~~~~~~l~~l~~  271 (285)
                      +|+.|+++.   .+..+..++.++.
T Consensus       166 ~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          166 GIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CHHHHHHHHHhCCceeeccCccccC
Confidence            788887766   6667777776653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.67  E-value=8e-17  Score=136.89  Aligned_cols=176  Identities=14%  Similarity=-0.005  Sum_probs=137.0

Q ss_pred             CceeEEEEEecCCcc-cccch--hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587           96 EKVRHLMLIIGEGAI-FPVST--RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR  172 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~-~~~~~--~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~  172 (285)
                      .+++.|.+..+.+.. .+..+  ..+++|++|++++|.....  ...+....+..+++|++|+++     +|.+.+..|.
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~--~~~~~~~~~~~~~~L~~L~Ls-----~n~l~~~~~~  163 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG--RSWLAELQQWLKPGLKVLSIA-----QAHSPAFSCE  163 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST--TSSHHHHHTTBCSCCCEEEEE-----CCSSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch--hhhhHHHHhhhccCCCEEEee-----CCCcchhhHH
Confidence            459999999998775 55555  8899999999999983210  001222345689999999999     9997666778


Q ss_pred             cccccCCCceEecccccccc---cch--hhhcCCCccEEecCCCCCcCcCccc----ccccCCCceeecCCCCCCcccCC
Q 043587          173 NIEKLVHLRYLSLSFQHIEK---LPE--TLCELYNLETLDISGCFDLEELPKG----IGKLVNMKHLLNSRTSSVRYMPV  243 (285)
Q Consensus       173 ~i~~l~~L~~L~l~~~~l~~---lp~--~i~~l~~L~~L~l~~~~~~~~lp~~----l~~l~~L~~L~l~~~~~~~~~p~  243 (285)
                      .++.+++|++|++++|++..   ++.  .++++++|++|++++|. ++.+|..    ++.+++|++|++++|.+.+..|.
T Consensus       164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~  242 (310)
T 4glp_A          164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNP  242 (310)
T ss_dssp             SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred             HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence            89999999999999999653   433  23689999999999998 6666542    57889999999999999877788


Q ss_pred             CCCCC---CcCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587          244 GIGRL---TGLRTLGEFT--KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       244 ~~~~l---~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      .+..+   ++|++|++++  -...+..+.  ++|+.|+++++.
T Consensus       243 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~  283 (310)
T 4glp_A          243 SAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR  283 (310)
T ss_dssp             CCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC
T ss_pred             hHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc
Confidence            88877   6999999998  334455553  789999988763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=4e-16  Score=148.82  Aligned_cols=147  Identities=19%  Similarity=0.181  Sum_probs=105.1

Q ss_pred             cccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccc--------cCCCceEeccccccc
Q 043587          120 RMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEK--------LVHLRYLSLSFQHIE  191 (285)
Q Consensus       120 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~--------l~~L~~L~l~~~~l~  191 (285)
                      +|+.|++++|.      ...++...+..+++|+.|+++     +|. ...+|..+..        +++|++|++++|.++
T Consensus       674 ~L~~L~Ls~N~------L~~lp~~~~~~l~~L~~L~Ls-----~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~  741 (876)
T 4ecn_A          674 NASTVTLSYNE------IQKFPTELFATGSPISTIILS-----NNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT  741 (876)
T ss_dssp             CEEEEECCSSC------CCSCCHHHHHTTCCCSEEECC-----SCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred             CcCEEEccCCc------CCccCHHHHccCCCCCEEECC-----CCc-CCccChHHhccccccccccCCccEEECCCCCCc
Confidence            56666666665      334555556677888888888     776 3366655443        237888888888888


Q ss_pred             ccchhhh--cCCCccEEecCCCCCcCcCcccccccCCCceeecCC------CCCCcccCCCCCCCCcCCcccccc--ccC
Q 043587          192 KLPETLC--ELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSR------TSSVRYMPVGIGRLTGLRTLGEFT--KAC  261 (285)
Q Consensus       192 ~lp~~i~--~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~------~~~~~~~p~~~~~l~~L~~L~l~~--~~~  261 (285)
                      .+|..+.  .+++|+.|++++|. +..+|..++.+++|+.|++++      |.+.+.+|..++.+++|++|++++  -..
T Consensus       742 ~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~  820 (876)
T 4ecn_A          742 SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK  820 (876)
T ss_dssp             CCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred             cchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc
Confidence            8887776  78888888888887 555788888888888888865      666777888888888888888877  334


Q ss_pred             CccccccCCcCCCceecccC
Q 043587          262 RLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       262 ~~~~l~~l~~L~~L~i~~~~  281 (285)
                      .+..+.  ++|+.|++++++
T Consensus       821 Ip~~l~--~~L~~LdLs~N~  838 (876)
T 4ecn_A          821 VDEKLT--PQLYILDIADNP  838 (876)
T ss_dssp             CCSCCC--SSSCEEECCSCT
T ss_pred             cCHhhc--CCCCEEECCCCC
Confidence            444444  578888887765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=1.7e-16  Score=128.31  Aligned_cols=131  Identities=14%  Similarity=0.133  Sum_probs=58.8

Q ss_pred             CceeEEEEEecCCcccc--cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           96 EKVRHLMLIIGEGAIFP--VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ..++.|.+..+.+...+  ..+..+++|++|++++|.      ...+++..|..+++|++|+++     +|.+.+..+..
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L~~L~Ls-----~N~l~~~~~~~  100 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK------ITDIEEGAFEGASGVNEILLT-----SNRLENVQHKM  100 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECC-----SSCCCCCCGGG
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc------CCEECHHHhCCCCCCCEEECC-----CCccCccCHhH
Confidence            34444555544444321  124445555555555544      222233334445555555554     44433333333


Q ss_pred             ccccCCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCC
Q 043587          174 IEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSS  237 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~  237 (285)
                      +..+++|++|++++|.++.+ |..+..+++|++|++++|...+..|..+..+++|++|++++|++
T Consensus       101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            44455555555555554444 23344445555555555542222244444455555555554443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.66  E-value=1.7e-16  Score=148.62  Aligned_cols=168  Identities=17%  Similarity=0.058  Sum_probs=138.0

Q ss_pred             EEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCC
Q 043587          100 HLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVH  179 (285)
Q Consensus       100 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~  179 (285)
                      .++++...+..+|..+.  +++++|++++|.      ...+++..|.++++|++|+++     +|.+.+..|..++.+++
T Consensus         8 ~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls-----~n~l~~~~~~~~~~l~~   74 (680)
T 1ziw_A            8 VADCSHLKLTQVPDDLP--TNITVLNLTHNQ------LRRLPAANFTRYSQLTSLDVG-----FNTISKLEPELCQKLPM   74 (680)
T ss_dssp             EEECCSSCCSSCCSCSC--TTCSEEECCSSC------CCCCCGGGGGGGTTCSEEECC-----SSCCCCCCTTHHHHCTT
T ss_pred             eeECCCCCccccccccC--CCCcEEECCCCC------CCCcCHHHHhCCCcCcEEECC-----CCccCccCHHHHhcccC
Confidence            45666666666666554  799999999998      444556679999999999999     88877777888999999


Q ss_pred             CceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587          180 LRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       180 L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  258 (285)
                      |++|++++|.++.+|+ .++++++|++|++++|...+..|..++++++|++|++++|.+.+..|..++.+++|++|++++
T Consensus        75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  154 (680)
T 1ziw_A           75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN  154 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred             cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence            9999999999999987 589999999999999984443446799999999999999999888888899999999999987


Q ss_pred             ---ccCCcccc--ccCCcCCCceeccc
Q 043587          259 ---KACRLESL--KNLEHLQICGIRRL  280 (285)
Q Consensus       259 ---~~~~~~~l--~~l~~L~~L~i~~~  280 (285)
                         ....+..+  ..+++|+.|+++++
T Consensus       155 n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          155 NKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             SCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             CcccccCHHHhhccccccccEEECCCC
Confidence               22233333  35688999998875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.66  E-value=2.3e-16  Score=126.18  Aligned_cols=161  Identities=20%  Similarity=0.186  Sum_probs=122.2

Q ss_pred             EEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCC
Q 043587          100 HLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVH  179 (285)
Q Consensus       100 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~  179 (285)
                      .+.+..+....++..+  .++|++|++++|.      ...+++..|..+++|++|+++     +|.+.+..+..+..+++
T Consensus        11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~   77 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI--PAQTTYLDLETNS------LKSLPNGVFDELTSLTQLYLG-----GNKLQSLPNGVFNKLTS   77 (208)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECC-----SSCCCCCCTTTTTTCTT
T ss_pred             EEEecCCCccCCCCCC--CCCCcEEEcCCCc------cCcCChhhhcccccCcEEECC-----CCccCccChhhcCCCCC
Confidence            3444445554455443  4689999999998      445556668899999999999     88855444456788999


Q ss_pred             CceEecccccccccchh-hhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCCcCCccccc
Q 043587          180 LRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEF  257 (285)
Q Consensus       180 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  257 (285)
                      |++|++++|.++.+|.. ++.+++|++|++++|. +..+|. .+..+++|++|++++|.+.+..+..+..+++|++|++.
T Consensus        78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  156 (208)
T 2o6s_A           78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH  156 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence            99999999999988764 6899999999999998 556655 47899999999999998886555568999999999998


Q ss_pred             cccCCccccccCCcCCCceec
Q 043587          258 TKACRLESLKNLEHLQICGIR  278 (285)
Q Consensus       258 ~~~~~~~~l~~l~~L~~L~i~  278 (285)
                      +...    .+.+++|+.|+++
T Consensus       157 ~N~~----~~~~~~l~~L~~~  173 (208)
T 2o6s_A          157 DNPW----DCTCPGIRYLSEW  173 (208)
T ss_dssp             SCCB----CCCTTTTHHHHHH
T ss_pred             CCCe----ecCCCCHHHHHHH
Confidence            7211    1334455555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.66  E-value=6.2e-17  Score=147.90  Aligned_cols=166  Identities=18%  Similarity=0.137  Sum_probs=136.8

Q ss_pred             EEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCce
Q 043587          103 LIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRY  182 (285)
Q Consensus       103 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~  182 (285)
                      ...+....+|..+.  ++|++|++++|.      ...+.+..|.++++|++|+++     +|.+.+..|..++.+++|++
T Consensus        12 ~~~~~l~~ip~~~~--~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls-----~n~i~~~~~~~~~~l~~L~~   78 (549)
T 2z81_A           12 GRSRSFTSIPSGLT--AAMKSLDLSFNK------ITYIGHGDLRACANLQVLILK-----SSRINTIEGDAFYSLGSLEH   78 (549)
T ss_dssp             CTTSCCSSCCSCCC--TTCCEEECCSSC------CCEECSSTTSSCTTCCEEECT-----TSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCccccccccCC--CCccEEECcCCc------cCccChhhhhcCCcccEEECC-----CCCcCccChhhccccccCCE
Confidence            33444555665543  799999999998      444456668999999999999     88866656688999999999


Q ss_pred             Eecccccccccchh-hhcCCCccEEecCCCCCcC-cCcccccccCCCceeecCCCCCCcccC-CCCCCCCcCCcccccc-
Q 043587          183 LSLSFQHIEKLPET-LCELYNLETLDISGCFDLE-ELPKGIGKLVNMKHLLNSRTSSVRYMP-VGIGRLTGLRTLGEFT-  258 (285)
Q Consensus       183 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~-  258 (285)
                      |++++|.++.+|+. ++++++|++|++++|...+ ..|..++.+++|++|++++|...+.+| ..++.+++|++|++++ 
T Consensus        79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A           79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence            99999999988765 9999999999999998433 356789999999999999998666776 5799999999999998 


Q ss_pred             --ccCCccccccCCcCCCceecccC
Q 043587          259 --KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       259 --~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                        ....+..++.+++|+.|++....
T Consensus       159 ~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          159 SLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             cccccChhhhhccccCceEecccCc
Confidence              45577889999999999987654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.66  E-value=1.2e-16  Score=148.04  Aligned_cols=150  Identities=16%  Similarity=0.145  Sum_probs=122.0

Q ss_pred             CCCCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+.++++|+++.+.+..++ ..|.++++|++|++++|.      ...+++.+|.++++|++|+|+     +|++.+..+
T Consensus        49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~------i~~i~~~~f~~L~~L~~L~Ls-----~N~l~~l~~  117 (635)
T 4g8a_A           49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILT-----GNPIQSLAL  117 (635)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECT-----TCCCCEECG
T ss_pred             CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc------CCCcChhHhcCCCCCCEEEcc-----CCcCCCCCH
Confidence            56788999999999888755 578999999999999998      556667778999999999999     888444344


Q ss_pred             ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcC-cCcccccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLE-ELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLT  249 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~  249 (285)
                      ..|.++.+|++|++++|.++.+|+ .++++++|++|++++|.... ..|..++.+++|++|++++|.+.+..|..++.+.
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  197 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence            668899999999999999998875 57899999999999998333 3577888999999999999988876666666665


Q ss_pred             cCCc
Q 043587          250 GLRT  253 (285)
Q Consensus       250 ~L~~  253 (285)
                      +++.
T Consensus       198 ~l~~  201 (635)
T 4g8a_A          198 QMPL  201 (635)
T ss_dssp             TCTT
T ss_pred             hhhh
Confidence            5543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.65  E-value=8.7e-16  Score=132.31  Aligned_cols=168  Identities=16%  Similarity=0.205  Sum_probs=101.4

Q ss_pred             CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ..++++.|.+..+.+...+. +..+++|++|++.+|.      ...+ + .+..+++|++|+++     +|. ...++. 
T Consensus        64 ~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~------i~~~-~-~~~~l~~L~~L~l~-----~n~-i~~~~~-  127 (347)
T 4fmz_A           64 YLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK------ITDI-S-ALQNLTNLRELYLN-----EDN-ISDISP-  127 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC------CCCC-G-GGTTCTTCSEEECT-----TSC-CCCCGG-
T ss_pred             hcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc------ccCc-h-HHcCCCcCCEEECc-----CCc-ccCchh-
Confidence            35566666666666555444 6666666777666665      2222 2 25666667777776     666 333433 


Q ss_pred             ccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCc
Q 043587          174 IEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRT  253 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~  253 (285)
                      +..+++|++|++++|.....++.+..+++|++|++++|. +...+. +..+++|++|++++|.+. .++. +..+++|+.
T Consensus       128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~  203 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIE-DISP-LASLTSLHY  203 (347)
T ss_dssp             GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCE
T ss_pred             hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCccc-cccc-ccCCCccce
Confidence            666666777777666533233346666777777777766 444443 666777777777777555 3333 666777777


Q ss_pred             ccccc-ccCCccccccCCcCCCceecccC
Q 043587          254 LGEFT-KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       254 L~l~~-~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      |++.+ .......+..+++|+.|+++++.
T Consensus       204 L~l~~n~l~~~~~~~~~~~L~~L~l~~n~  232 (347)
T 4fmz_A          204 FTAYVNQITDITPVANMTRLNSLKIGNNK  232 (347)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             eecccCCCCCCchhhcCCcCCEEEccCCc
Confidence            77766 22222337777788888777653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.65  E-value=1e-16  Score=147.06  Aligned_cols=132  Identities=25%  Similarity=0.250  Sum_probs=84.7

Q ss_pred             HhcCCccceeeecccccccccCCCccc-ccccccCCCceEecccccccc-cchhhhcCCCccEEecCCCCCc-CcCcccc
Q 043587          145 FRELTSLRALDFCESYHSRSSLTPEIP-RNIEKLVHLRYLSLSFQHIEK-LPETLCELYNLETLDISGCFDL-EELPKGI  221 (285)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~p-~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~-~~lp~~l  221 (285)
                      +..+++|+.|+++     +|.+.+..| ..+..+++|++|++++|.+.. .|..+.++++|++|++++|... +.+|..+
T Consensus       392 ~~~l~~L~~L~l~-----~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~  466 (570)
T 2z63_A          392 FLGLEQLEHLDFQ-----HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF  466 (570)
T ss_dssp             EETCTTCCEEECT-----TSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             ccccCCCCEEEcc-----CCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh
Confidence            4444555555555     555333333 345666677777777776554 3445667777777777777633 3567677


Q ss_pred             cccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587          222 GKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       222 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      +.+++|++|++++|.+.+..|..++.+++|++|++++   ....+..+..+++|+.|+++++.
T Consensus       467 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence            7777777777777777766677777777777777776   33334456777777777777643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.65  E-value=4e-16  Score=134.43  Aligned_cols=126  Identities=17%  Similarity=0.260  Sum_probs=80.9

Q ss_pred             HhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCccccccc
Q 043587          145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKL  224 (285)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l  224 (285)
                      +..+++|+.|+++     +|. ...++. +..+++|++|++++|.++.++ .+..+++|+.|++++|. +..+| .+..+
T Consensus       217 ~~~~~~L~~L~l~-----~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~~~~l  286 (347)
T 4fmz_A          217 VANMTRLNSLKIG-----NNK-ITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQ-ISDIS-VLNNL  286 (347)
T ss_dssp             GGGCTTCCEEECC-----SSC-CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCG-GGGGC
T ss_pred             hhcCCcCCEEEcc-----CCc-cCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCc-cCCCh-hhcCC
Confidence            5556666666666     666 333333 666677777777777766653 46667777777777776 55554 46677


Q ss_pred             CCCceeecCCCCCCcccCCCCCCCCcCCcccccc-ccCCccccccCCcCCCceeccc
Q 043587          225 VNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       225 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      ++|++|++++|.+.+..|..++.+++|++|++++ .......+..+++|+.|+++++
T Consensus       287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ  343 (347)
T ss_dssp             TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhh
Confidence            7777777777776666666667777777777776 2222222667777777777665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.64  E-value=2.1e-16  Score=143.48  Aligned_cols=168  Identities=18%  Similarity=0.206  Sum_probs=86.4

Q ss_pred             CceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           96 EKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      .+++.|+++.+.+...+ ..+.++++|++|++++|.      ...+.+..|.++++|++|+++     +|. ...+|.. 
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls-----~N~-l~~lp~~-   87 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNR------IQYLDISVFKFNQELEYLDLS-----HNK-LVKISCH-   87 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC------CCEEEGGGGTTCTTCCEEECC-----SSC-CCEEECC-
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCc------cCCcChHHhhcccCCCEEecC-----CCc-eeecCcc-
Confidence            45555555555554432 345555556666665555      222234445555556666655     555 3344443 


Q ss_pred             cccCCCceEecccccccc--cchhhhcCCCccEEecCCCCCcCcCcccccccCCC--ceeecCCCCC--CcccCCCCCCC
Q 043587          175 EKLVHLRYLSLSFQHIEK--LPETLCELYNLETLDISGCFDLEELPKGIGKLVNM--KHLLNSRTSS--VRYMPVGIGRL  248 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L--~~L~l~~~~~--~~~~p~~~~~l  248 (285)
                       .+++|++|++++|.++.  +|..++++++|++|++++|. +..  ..+..+++|  ++|++++|.+  .+..|..++.+
T Consensus        88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l  163 (520)
T 2z7x_B           88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF  163 (520)
T ss_dssp             -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred             -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccccc
Confidence             45555666665555553  34555555566666665555 222  234445555  5556555555  44445555444


Q ss_pred             CcCCccc--ccc----ccCCccccccCCcCCCceecccC
Q 043587          249 TGLRTLG--EFT----KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       249 ~~L~~L~--l~~----~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      .. +.+.  +.+    .......+..+++|+.|+++++.
T Consensus       164 ~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  201 (520)
T 2z7x_B          164 NT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL  201 (520)
T ss_dssp             CE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred             cc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence            42 2222  221    11222345567888888877653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.64  E-value=2e-16  Score=151.74  Aligned_cols=169  Identities=18%  Similarity=0.183  Sum_probs=139.0

Q ss_pred             eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc-ccccccc
Q 043587           99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI-PRNIEKL  177 (285)
Q Consensus        99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-p~~i~~l  177 (285)
                      +.++.+...+..+|.   -.+++++|++++|.      ...+.+..|.++++|++|+++     +|...+.+ |..++++
T Consensus         7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~------i~~i~~~~~~~l~~L~~LdLs-----~n~~~~~i~~~~f~~L   72 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNY------IRTVTASSFPFLEQLQLLELG-----SQYTPLTIDKEAFRNL   72 (844)
T ss_dssp             EEEEESCCCSSCCCS---SCTTCCEEEEESCC------CCEECSSSCSSCCSCSEEEEC-----TTCCCCEECTTTTSSC
T ss_pred             eEEEccCCCCCCCCC---CCCCcCEEECCCCc------CCccChhHCcccccCeEEeCC-----CCCCccccCHHHhcCC
Confidence            345566666666665   45899999999998      444456678999999999999     88657776 7889999


Q ss_pred             CCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCccc--ccccCCCceeecCCCCCCcccC-CCCCCCCcCCc
Q 043587          178 VHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELPKG--IGKLVNMKHLLNSRTSSVRYMP-VGIGRLTGLRT  253 (285)
Q Consensus       178 ~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~--l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~  253 (285)
                      ++|++|++++|.++.+ |..++++++|++|++++|...+..|..  ++++++|++|++++|.+.+..| ..++++++|++
T Consensus        73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~  152 (844)
T 3j0a_A           73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS  152 (844)
T ss_dssp             TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred             CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence            9999999999998876 778999999999999999865556655  8999999999999998876544 57999999999


Q ss_pred             ccccc---ccCCccccccC--CcCCCceecccC
Q 043587          254 LGEFT---KACRLESLKNL--EHLQICGIRRLG  281 (285)
Q Consensus       254 L~l~~---~~~~~~~l~~l--~~L~~L~i~~~~  281 (285)
                      |++++   ....+..+..+  ++|+.|++.++.
T Consensus       153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~  185 (844)
T 3j0a_A          153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS  185 (844)
T ss_dssp             EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred             EECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence            99988   44456667776  789998887653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.64  E-value=8.5e-16  Score=124.87  Aligned_cols=136  Identities=20%  Similarity=0.275  Sum_probs=117.6

Q ss_pred             CCCCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+.+++.|.+..+.+... +..+.++++|+.|++++|.      ...+++..|..+++|++|+++     +|.+.+..+
T Consensus        37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~------l~~i~~~~~~~l~~L~~L~Ls-----~N~l~~l~~  105 (229)
T 3e6j_A           37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ------LGALPVGVFDSLTQLTVLDLG-----TNQLTVLPS  105 (229)
T ss_dssp             CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC------CCCCCTTTTTTCTTCCEEECC-----SSCCCCCCT
T ss_pred             CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC------CCCcChhhcccCCCcCEEECC-----CCcCCccCh
Confidence            4678999999999998874 6678999999999999998      455556668899999999999     888555455


Q ss_pred             ccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCcc
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVRY  240 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~  240 (285)
                      ..+..+++|++|++++|.++.+|..+..+++|++|++++|+ +..+| ..+..+++|++|++++|++...
T Consensus       106 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            56789999999999999999999999999999999999998 66666 4588999999999999987644

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.64  E-value=2.2e-17  Score=140.80  Aligned_cols=167  Identities=10%  Similarity=0.046  Sum_probs=111.3

Q ss_pred             CceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc
Q 043587           96 EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE  175 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~  175 (285)
                      ..++.+.+..+.+...+.  ..+++|++|++++|.      ...+.+..+..+++|++|+++     +|.+.+..+..+.
T Consensus        99 ~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~------l~~~~~~~~~~l~~L~~L~Ls-----~N~l~~~~~~~~~  165 (317)
T 3o53_A           99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNK------ITMLRDLDEGCRSRVQYLDLK-----LNEIDTVNFAELA  165 (317)
T ss_dssp             TTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSC------CCSGGGBCTGGGSSEEEEECT-----TSCCCEEEGGGGG
T ss_pred             CCcCEEECCCCccCCcCc--cccCCCCEEECCCCC------CCCccchhhhccCCCCEEECC-----CCCCCcccHHHHh
Confidence            455666666665544322  235667777777776      333344456777778888887     7774444455553


Q ss_pred             -ccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          176 -KLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       176 -~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                       .+++|++|++++|.++.+|. ...+++|++|++++|. +..+|..+..+++|++|++++|.+. .+|..+..+++|+.|
T Consensus       166 ~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L  242 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF  242 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred             hccCcCCEEECCCCcCccccc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence             57778888888888777753 3357778888888877 6666667777788888888887666 567777777888888


Q ss_pred             cccc---c-cCCccccccCCcCCCceec
Q 043587          255 GEFT---K-ACRLESLKNLEHLQICGIR  278 (285)
Q Consensus       255 ~l~~---~-~~~~~~l~~l~~L~~L~i~  278 (285)
                      ++++   . ...+..+..+++|+.|++.
T Consensus       243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             ECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             EccCCCccCcCHHHHHhccccceEEECC
Confidence            8776   2 3445556666667666655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.64  E-value=2.6e-16  Score=134.16  Aligned_cols=173  Identities=15%  Similarity=0.105  Sum_probs=111.7

Q ss_pred             CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHH----------------HHhcCCccceeeec
Q 043587           94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEE----------------LFRELTSLRALDFC  157 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~----------------~~~~~~~L~~L~L~  157 (285)
                      ...+++.|.+..+.+...++ +..+++|++|++++|.      ...+++.                ....+++|+.|+++
T Consensus        56 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~------l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~  128 (317)
T 3o53_A           56 PFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA  128 (317)
T ss_dssp             TCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE------EEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECC
T ss_pred             CCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc------cccccCCCCcCEEECCCCccCCcCccccCCCCEEECC
Confidence            34566666666666554333 6666666666666665      1111000                00112334444444


Q ss_pred             ccccccccCCCcccccccccCCCceEecccccccccc-hhh-hcCCCccEEecCCCCCcCcCcccccccCCCceeecCCC
Q 043587          158 ESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLP-ETL-CELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRT  235 (285)
Q Consensus       158 ~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp-~~i-~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~  235 (285)
                           +|.+.+..+..++.+++|++|++++|.++.++ ..+ ..+++|++|++++|. ++.+|. ...+++|++|++++|
T Consensus       129 -----~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N  201 (317)
T 3o53_A          129 -----NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN  201 (317)
T ss_dssp             -----SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS
T ss_pred             -----CCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCC
Confidence                 56644444556777888888888888877654 344 367888888888887 666653 345888888888888


Q ss_pred             CCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587          236 SSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       236 ~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      .+. .+|..+..+++|++|++++  -...+..+..+++|+.|+++++.
T Consensus       202 ~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          202 KLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             CCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred             cCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence            776 4566688888888888887  33455667888888888887754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.64  E-value=1.8e-16  Score=146.76  Aligned_cols=158  Identities=20%  Similarity=0.161  Sum_probs=124.9

Q ss_pred             EEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCc
Q 043587          102 MLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLR  181 (285)
Q Consensus       102 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~  181 (285)
                      +........+|..+.  +++++|++++|.      ...+++..|.++++|++|+|+     +|++.+..|.+|..+++|+
T Consensus        37 ~c~~~~l~~vP~~lp--~~~~~LdLs~N~------i~~l~~~~f~~l~~L~~L~Ls-----~N~i~~i~~~~f~~L~~L~  103 (635)
T 4g8a_A           37 QCMELNFYKIPDNLP--FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLS-----RCEIQTIEDGAYQSLSHLS  103 (635)
T ss_dssp             ECTTSCCSSCCSSSC--TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECT-----TCCCCEECTTTTTTCTTCC
T ss_pred             ECCCCCcCccCCCCC--cCCCEEEeeCCC------CCCCCHHHHhCCCCCCEEECC-----CCcCCCcChhHhcCCCCCC
Confidence            333334444565442  479999999998      666667789999999999999     9985444466799999999


Q ss_pred             eEecccccccccch-hhhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCc-ccCCCCCCCCcCCcccccc
Q 043587          182 YLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVR-YMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       182 ~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~  258 (285)
                      +|+|++|+++.+|+ .+.++++|++|++++|+ +..+|. .++++++|++|++++|.+.. ..|..++.+++|++|++++
T Consensus       104 ~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  182 (635)
T 4g8a_A          104 TLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  182 (635)
T ss_dssp             EEECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred             EEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence            99999999999986 57899999999999998 666654 58999999999999998765 5678899999999999987


Q ss_pred             ---ccCCccccccCCcCC
Q 043587          259 ---KACRLESLKNLEHLQ  273 (285)
Q Consensus       259 ---~~~~~~~l~~l~~L~  273 (285)
                         ....+..+..+++++
T Consensus       183 N~l~~~~~~~l~~L~~l~  200 (635)
T 4g8a_A          183 NKIQSIYCTDLRVLHQMP  200 (635)
T ss_dssp             SCCCEECGGGGHHHHTCT
T ss_pred             ccccccccccccchhhhh
Confidence               333344455444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=1.8e-16  Score=131.59  Aligned_cols=143  Identities=17%  Similarity=0.143  Sum_probs=117.0

Q ss_pred             CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ...+++.|.+..+.+..++ .+..+++|++|++++|.      ...+++  +..+++|++|+++     +|. ...+|..
T Consensus        39 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~------i~~~~~--l~~l~~L~~L~L~-----~N~-l~~l~~~  103 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ------ISDLSP--LKDLTKLEELSVN-----RNR-LKNLNGI  103 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC------CCCCGG--GTTCSSCCEEECC-----SSC-CSCCTTC
T ss_pred             hcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc------cCCChh--hccCCCCCEEECC-----CCc-cCCcCcc
Confidence            4568899999988877665 68889999999999998      444333  8889999999999     887 4445543


Q ss_pred             ccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCc
Q 043587          174 IEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRT  253 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~  253 (285)
                      ..  .+|++|++++|.++.+| .++.+++|+.|++++|+ ++.+| .++.+++|++|++++|.+.+.  ..+..+++|+.
T Consensus       104 ~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~  176 (263)
T 1xeu_A          104 PS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW  176 (263)
T ss_dssp             CC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred             cc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence            33  88999999999998876 58899999999999998 67776 688999999999999988754  67888999999


Q ss_pred             ccccc
Q 043587          254 LGEFT  258 (285)
Q Consensus       254 L~l~~  258 (285)
                      |++++
T Consensus       177 L~l~~  181 (263)
T 1xeu_A          177 IDLTG  181 (263)
T ss_dssp             EEEEE
T ss_pred             EeCCC
Confidence            99887

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.63  E-value=9.4e-16  Score=140.63  Aligned_cols=106  Identities=22%  Similarity=0.248  Sum_probs=78.1

Q ss_pred             CCCCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+.+++.|+++.+.+...+ ..+.++++|++|++++|.      ...+.+..|.++++|++|+++     +|. ...+|
T Consensus        49 ~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls-----~N~-l~~lp  116 (562)
T 3a79_B           49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR------IRSLDFHVFLFNQDLEYLDVS-----HNR-LQNIS  116 (562)
T ss_dssp             TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC------CCEECTTTTTTCTTCCEEECT-----TSC-CCEEC
T ss_pred             CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC------CCcCCHHHhCCCCCCCEEECC-----CCc-CCccC
Confidence            35678899999998887754 578889999999999887      444456668888888888888     666 44566


Q ss_pred             ccccccCCCceEecccccccccc--hhhhcCCCccEEecCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLP--ETLCELYNLETLDISGCF  212 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~  212 (285)
                      ..  .+++|++|++++|.++.+|  ..++++++|++|++++|.
T Consensus       117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence            55  6777777777777766543  566677777777666664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=5.5e-16  Score=119.76  Aligned_cols=131  Identities=20%  Similarity=0.176  Sum_probs=82.5

Q ss_pred             CCCceeEEEEEecCCc--ccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           94 LDEKVRHLMLIIGEGA--IFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      .+.+++.|.+..+.+.  .++..+..+++|++|++++|.      ...+  ..+..+++|++|+++     +|.+.+.+|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~------l~~~--~~~~~l~~L~~L~Ls-----~N~l~~~~~   88 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LISV--SNLPKLPKLKKLELS-----ENRIFGGLD   88 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC------CCCC--SSCCCCSSCCEEEEE-----SCCCCSCCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC------CCCh--hhhccCCCCCEEECc-----CCcCchHHH
Confidence            4566777777776665  455566667777777777766      2222  335666677777776     666444455


Q ss_pred             ccccccCCCceEecccccccccc--hhhhcCCCccEEecCCCCCcCcCcc----cccccCCCceeecCCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLP--ETLCELYNLETLDISGCFDLEELPK----GIGKLVNMKHLLNSRTSSV  238 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~----~l~~l~~L~~L~l~~~~~~  238 (285)
                      ..+..+++|++|++++|.++.+|  ..+..+++|++|++++|. +...|.    .+..+++|++|++++|...
T Consensus        89 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            55556677777777777766654  456666777777777766 444544    5666677777777666443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.63  E-value=6.7e-16  Score=140.21  Aligned_cols=152  Identities=16%  Similarity=0.123  Sum_probs=88.7

Q ss_pred             hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCC--cccccccccCCCceEecccccccc-
Q 043587          116 RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTP--EIPRNIEKLVHLRYLSLSFQHIEK-  192 (285)
Q Consensus       116 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~--~~p~~i~~l~~L~~L~l~~~~l~~-  192 (285)
                      ..+++|++|++++|.     +.+. .+..+..+++|++|+++     +|++.+  .+|..++.+++|++|++++|.++. 
T Consensus       321 ~~l~~L~~L~Ls~n~-----l~~~-~~~~~~~l~~L~~L~L~-----~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~  389 (520)
T 2z7x_B          321 SKISPFLHLDFSNNL-----LTDT-VFENCGHLTELETLILQ-----MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD  389 (520)
T ss_dssp             SSCCCCCEEECCSSC-----CCTT-TTTTCCCCSSCCEEECC-----SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred             hhCCcccEEEeECCc-----cChh-hhhhhccCCCCCEEEcc-----CCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence            455666666666665     2222 23445666666666666     555333  344556666666666666666665 


Q ss_pred             cchh-hhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccc-ccc
Q 043587          193 LPET-LCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLES-LKN  268 (285)
Q Consensus       193 lp~~-i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~-l~~  268 (285)
                      +|.. +..+++|+.|++++|...+..|..+.  ++|++|++++|.+. .+|..+..+++|++|++++  -...+.. +..
T Consensus       390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  466 (520)
T 2z7x_B          390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDR  466 (520)
T ss_dssp             GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhcc
Confidence            5543 45566666666666664444444432  56667777666555 6666666777777777766  2233333 666


Q ss_pred             CCcCCCceecccC
Q 043587          269 LEHLQICGIRRLG  281 (285)
Q Consensus       269 l~~L~~L~i~~~~  281 (285)
                      +++|+.|+++++.
T Consensus       467 l~~L~~L~l~~N~  479 (520)
T 2z7x_B          467 LTSLQKIWLHTNP  479 (520)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CCcccEEECcCCC
Confidence            6677777666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.62  E-value=3.1e-15  Score=134.12  Aligned_cols=124  Identities=24%  Similarity=0.333  Sum_probs=61.8

Q ss_pred             HhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCccccccc
Q 043587          145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKL  224 (285)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l  224 (285)
                      +..+++|++|+++     +|.+.+ ++. +..+++|++|++++|.++.+|. +..+++|+.|++++|. +..++. ++.+
T Consensus       239 l~~l~~L~~L~l~-----~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l  308 (466)
T 1o6v_A          239 LASLTNLTDLDLA-----NNQISN-LAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDISP-ISNL  308 (466)
T ss_dssp             GGGCTTCSEEECC-----SSCCCC-CGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCGG-GGGC
T ss_pred             hhcCCCCCEEECC-----CCcccc-chh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCchh-hcCC
Confidence            4445555555555     444222 221 4555555555555555555543 5555555555555555 333432 5555


Q ss_pred             CCCceeecCCCCCCcccCCCCCCCCcCCcccccc-ccCCccccccCCcCCCceeccc
Q 043587          225 VNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       225 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      ++|++|++++|.+.+..|  ++.+++|++|++++ ....+..+..+++|+.|+++++
T Consensus       309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n  363 (466)
T 1o6v_A          309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN  363 (466)
T ss_dssp             TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCC
Confidence            555555555555544332  44555555555554 2122234455555555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.62  E-value=2.4e-15  Score=134.82  Aligned_cols=166  Identities=20%  Similarity=0.319  Sum_probs=84.5

Q ss_pred             CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ...+++.|++..+.+...+. +.++++|++|++.+|.      ...+++  +..+++|++|+++     +|. ...++. 
T Consensus        66 ~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~------l~~~~~--~~~l~~L~~L~L~-----~n~-l~~~~~-  129 (466)
T 1o6v_A           66 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ------IADITP--LANLTNLTGLTLF-----NNQ-ITDIDP-  129 (466)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC------CCCCGG--GTTCTTCCEEECC-----SSC-CCCCGG-
T ss_pred             hhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc------cccChh--hcCCCCCCEEECC-----CCC-CCCChH-
Confidence            35567777777666665544 6666677777776665      222222  5666666666666     555 333332 


Q ss_pred             ccccCCCceEecccccccccch--------------------hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecC
Q 043587          174 IEKLVHLRYLSLSFQHIEKLPE--------------------TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNS  233 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~lp~--------------------~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~  233 (285)
                      +..+++|++|++++|.++.+|.                    .++++++|+.|++++|. +..++ .+..+++|++|+++
T Consensus       130 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~  207 (466)
T 1o6v_A          130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS-VLAKLTNLESLIAT  207 (466)
T ss_dssp             GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECC
T ss_pred             HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEec
Confidence            5555666666666555444331                    13344555555555554 33333 34555555555555


Q ss_pred             CCCCCcccCCCCCCCCcCCcccccc-ccCCccccccCCcCCCceecc
Q 043587          234 RTSSVRYMPVGIGRLTGLRTLGEFT-KACRLESLKNLEHLQICGIRR  279 (285)
Q Consensus       234 ~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~L~~L~i~~  279 (285)
                      +|.+.+..|  ++.+++|++|++++ .......+..+++|+.|++++
T Consensus       208 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  252 (466)
T 1o6v_A          208 NNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN  252 (466)
T ss_dssp             SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred             CCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCC
Confidence            554443322  44444455554444 111223344444444444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=2.4e-15  Score=124.83  Aligned_cols=146  Identities=15%  Similarity=0.181  Sum_probs=94.8

Q ss_pred             chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccccc
Q 043587          114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL  193 (285)
Q Consensus       114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l  193 (285)
                      .+..+++|++|++++|.      ...+ + .+..+++|++|+++     +|. +..++. +..+++|++|++++|.++.+
T Consensus        36 ~~~~l~~L~~L~l~~n~------i~~l-~-~l~~l~~L~~L~L~-----~N~-i~~~~~-l~~l~~L~~L~L~~N~l~~l  100 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSN------IQSL-A-GMQFFTNLKELHLS-----HNQ-ISDLSP-LKDLTKLEELSVNRNRLKNL  100 (263)
T ss_dssp             CHHHHTTCSEEECTTSC------CCCC-T-TGGGCTTCCEEECC-----SSC-CCCCGG-GTTCSSCCEEECCSSCCSCC
T ss_pred             chhhcCcCcEEECcCCC------cccc-h-HHhhCCCCCEEECC-----CCc-cCCChh-hccCCCCCEEECCCCccCCc
Confidence            45677777777777776      3333 2 36677777777777     666 334443 67777777777777777766


Q ss_pred             chhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc-ccCCccccccCCcC
Q 043587          194 PETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-KACRLESLKNLEHL  272 (285)
Q Consensus       194 p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~L  272 (285)
                      |.. .. ++|+.|++++|. ++.+| .++.+++|++|++++|.+.+ +| .++.+++|++|++++ .......+..+++|
T Consensus       101 ~~~-~~-~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L  174 (263)
T 1xeu_A          101 NGI-PS-ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKV  174 (263)
T ss_dssp             TTC-CC-SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCC
T ss_pred             Ccc-cc-CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcchHHhccCCCC
Confidence            642 23 677777777776 55554 47777777777777776653 33 567777777777776 22222556677777


Q ss_pred             CCceeccc
Q 043587          273 QICGIRRL  280 (285)
Q Consensus       273 ~~L~i~~~  280 (285)
                      +.|++++.
T Consensus       175 ~~L~l~~N  182 (263)
T 1xeu_A          175 NWIDLTGQ  182 (263)
T ss_dssp             CEEEEEEE
T ss_pred             CEEeCCCC
Confidence            77776654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.62  E-value=3.7e-16  Score=140.86  Aligned_cols=174  Identities=14%  Similarity=0.038  Sum_probs=120.2

Q ss_pred             CCceeEEEEEecCCccc-ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeeccccc------------
Q 043587           95 DEKVRHLMLIIGEGAIF-PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYH------------  161 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~------------  161 (285)
                      .++++.|.+.++.+... +..+..+++|++|++++|.     +.+. ++  +..+++|++|++++|.+            
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~-~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-----LYET-LD--LESLSTLRTLDLNNNYVQELLVGPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-----CEEE-EE--CTTCTTCCEEECCSSEEEEEEECTTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-----CCCC-cc--cccCCCCCEEEecCCcCCCCCCCCCcCEE
Confidence            34677777777777663 3567777777777777776     2322 22  66777777777773321            


Q ss_pred             --ccccCCCcccccccccCCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCccccc-ccCCCceeecCCCCC
Q 043587          162 --SRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELPKGIG-KLVNMKHLLNSRTSS  237 (285)
Q Consensus       162 --~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~l~-~l~~L~~L~l~~~~~  237 (285)
                        ++|.+.+..+   ..+++|++|++++|.++.+ |..++.+++|++|++++|...+..|..+. .+++|++|++++|.+
T Consensus       105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence              2444222222   2357788888888888866 44678888999999999885555666665 788999999999887


Q ss_pred             CcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587          238 VRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       238 ~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      .+. |. ...+++|+.|++++  -...+..+..+++|+.|+++++.
T Consensus       182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          182 YDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             CEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred             ccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence            754 33 44688999999888  33344558888899999888753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.61  E-value=1.9e-15  Score=122.06  Aligned_cols=147  Identities=15%  Similarity=0.116  Sum_probs=122.3

Q ss_pred             eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhH-HHHHHhcCCccceeeecccccccccCCCccccccccc
Q 043587           99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEI-LEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKL  177 (285)
Q Consensus        99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l  177 (285)
                      +.+.+..+.+..+|..+.  ..++.|++++|.      ...+ ++..|..+++|++|+++     +|.+.+..+..+..+
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~------l~~~~~~~~~~~l~~L~~L~L~-----~N~i~~i~~~~~~~l   80 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE------FTVLEATGIFKKLPQLRKINFS-----NNKITDIEEGAFEGA   80 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSC------CCEECCCCCGGGCTTCCEEECC-----SSCCCEECTTTTTTC
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCc------CCccCchhhhccCCCCCEEECC-----CCcCCEECHHHhCCC
Confidence            466777777766666543  467899999998      3333 23457899999999999     888555555689999


Q ss_pred             CCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccc
Q 043587          178 VHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGE  256 (285)
Q Consensus       178 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  256 (285)
                      ++|++|++++|.++.+|. .+.++++|++|++++|...+..|..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus        81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  160 (220)
T 2v70_A           81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL  160 (220)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence            999999999999998875 4789999999999999955555788999999999999999998877899999999999999


Q ss_pred             cc
Q 043587          257 FT  258 (285)
Q Consensus       257 ~~  258 (285)
                      .+
T Consensus       161 ~~  162 (220)
T 2v70_A          161 LA  162 (220)
T ss_dssp             CS
T ss_pred             cC
Confidence            87

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.61  E-value=3.8e-15  Score=125.45  Aligned_cols=145  Identities=19%  Similarity=0.298  Sum_probs=124.9

Q ss_pred             CCCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR  172 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~  172 (285)
                      ....+++.|.+..+.+...+. +..+++|++|++++|.      ...+ +. +..+++|++|+++     +|. ...+ .
T Consensus        65 ~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~------l~~~-~~-l~~l~~L~~L~L~-----~n~-i~~~-~  128 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK------VKDL-SS-LKDLKKLKSLSLE-----HNG-ISDI-N  128 (291)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC------CCCG-GG-GTTCTTCCEEECT-----TSC-CCCC-G
T ss_pred             hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc------CCCC-hh-hccCCCCCEEECC-----CCc-CCCC-h
Confidence            456799999999999887666 8999999999999998      4443 33 8899999999999     888 4445 4


Q ss_pred             cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587          173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR  252 (285)
Q Consensus       173 ~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~  252 (285)
                      .+..+++|++|++++|.++.+ +.++.+++|+.|++++|. +..++. +..+++|++|++++|.+. .+| .+..+++|+
T Consensus       129 ~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~i~-~l~-~l~~l~~L~  203 (291)
T 1h6t_A          129 GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLD  203 (291)
T ss_dssp             GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCS
T ss_pred             hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCcCC-CCh-hhccCCCCC
Confidence            688999999999999999988 578999999999999998 666765 999999999999999876 455 489999999


Q ss_pred             cccccc
Q 043587          253 TLGEFT  258 (285)
Q Consensus       253 ~L~l~~  258 (285)
                      .|++++
T Consensus       204 ~L~l~~  209 (291)
T 1h6t_A          204 VLELFS  209 (291)
T ss_dssp             EEEEEE
T ss_pred             EEECcC
Confidence            999988

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=8.2e-17  Score=147.44  Aligned_cols=172  Identities=17%  Similarity=0.154  Sum_probs=120.1

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCC--------CCCchhhHHHHHHhcCC-----------------
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSD--------HSSLNGEILEELFRELT-----------------  149 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--------~~~l~~~~~~~~~~~~~-----------------  149 (285)
                      ..++++|.++.+.+..+|..++.+++|+.|++.++...        .....+. .+..+..++                 
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~n~~~~L~  426 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDDLR  426 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhhcccchhh
Confidence            44566777777777778888889999998887555200        0000111 223233332                 


Q ss_pred             ---------------ccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCc
Q 043587          150 ---------------SLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDL  214 (285)
Q Consensus       150 ---------------~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~  214 (285)
                                     .|++|+++     +|. ...+|. ++.+++|++|++++|.++.+|..++++++|++|++++|. +
T Consensus       427 ~l~l~~n~i~~l~~~~L~~L~Ls-----~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l  498 (567)
T 1dce_A          427 SKFLLENSVLKMEYADVRVLHLA-----HKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-L  498 (567)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEECT-----TSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-C
T ss_pred             hhhhhcccccccCccCceEEEec-----CCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-C
Confidence                           35566666     777 445775 888888999999988888888888888899999998887 6


Q ss_pred             CcCcccccccCCCceeecCCCCCCccc-CCCCCCCCcCCcccccc--ccCCc----cccccCCcCCCce
Q 043587          215 EELPKGIGKLVNMKHLLNSRTSSVRYM-PVGIGRLTGLRTLGEFT--KACRL----ESLKNLEHLQICG  276 (285)
Q Consensus       215 ~~lp~~l~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~--~~~~~----~~l~~l~~L~~L~  276 (285)
                      +.+| .++.+++|++|++++|.+.+.. |..++.+++|+.|++++  -...+    ..+..+++|+.|+
T Consensus       499 ~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          499 ENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            6677 7888888999999888887655 88888888899888887  11111    2234477777765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.60  E-value=2.9e-15  Score=137.36  Aligned_cols=152  Identities=13%  Similarity=0.107  Sum_probs=101.6

Q ss_pred             hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCC--cccccccccCCCceEecccccccc-
Q 043587          116 RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTP--EIPRNIEKLVHLRYLSLSFQHIEK-  192 (285)
Q Consensus       116 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~--~~p~~i~~l~~L~~L~l~~~~l~~-  192 (285)
                      ..+++|++|++++|.     +.+. .+..+..+++|++|+++     +|.+.+  .+|..++.+++|++|++++|.++. 
T Consensus       350 ~~l~~L~~L~l~~n~-----l~~~-~~~~~~~l~~L~~L~L~-----~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~  418 (562)
T 3a79_B          350 PSPSSFTFLNFTQNV-----FTDS-VFQGCSTLKRLQTLILQ-----RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH  418 (562)
T ss_dssp             SSCCCCCEEECCSSC-----CCTT-TTTTCCSCSSCCEEECC-----SSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred             cCCCCceEEECCCCc-----cccc-hhhhhcccCCCCEEECC-----CCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence            456677777777776     2332 34446677777777777     666333  234556677777777777777665 


Q ss_pred             cchh-hhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccc-ccc
Q 043587          193 LPET-LCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLES-LKN  268 (285)
Q Consensus       193 lp~~-i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~-l~~  268 (285)
                      +|.. +..+++|+.|++++|...+..|..+.  ++|++|++++|.+. .+|..+..+++|++|++++  -...+.. +..
T Consensus       419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  495 (562)
T 3a79_B          419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDR  495 (562)
T ss_dssp             CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred             cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence            6643 55667777777777764455554433  57888888888665 6777777888888888887  2234444 788


Q ss_pred             CCcCCCceecccC
Q 043587          269 LEHLQICGIRRLG  281 (285)
Q Consensus       269 l~~L~~L~i~~~~  281 (285)
                      +++|+.|++++..
T Consensus       496 l~~L~~L~l~~N~  508 (562)
T 3a79_B          496 LTSLQYIWLHDNP  508 (562)
T ss_dssp             CTTCCCEECCSCC
T ss_pred             CCCCCEEEecCCC
Confidence            8888888887654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.60  E-value=4.9e-15  Score=132.46  Aligned_cols=160  Identities=14%  Similarity=0.107  Sum_probs=92.3

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ..+++.|.+..+.+..++  +..+++|++|++++|.      ...+ +  +..+++|++|+++     +|.+.+ +|  +
T Consensus        63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~------l~~~-~--~~~l~~L~~L~L~-----~N~l~~-l~--~  123 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK------LTNL-D--VTPLTKLTYLNCD-----TNKLTK-LD--V  123 (457)
T ss_dssp             CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC------CSCC-C--CTTCTTCCEEECC-----SSCCSC-CC--C
T ss_pred             cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC------Ccee-e--cCCCCcCCEEECC-----CCcCCe-ec--C
Confidence            445555555555554432  5555566666665555      2221 1  4555666666666     555322 33  5


Q ss_pred             cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                      +.+++|++|++++|.++.++  ++.+++|++|++++|..++.+  .++.+++|++|++++|.+.+ +|  ++.+++|+.|
T Consensus       124 ~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L  196 (457)
T 3bz5_A          124 SQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRL  196 (457)
T ss_dssp             TTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEE
T ss_pred             CCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEE
Confidence            55666666666666666553  556666666666666445544  35666777777777776653 44  6677777777


Q ss_pred             ccccccCCccccccCCcCCCceeccc
Q 043587          255 GEFTKACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       255 ~l~~~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      ++++..-.-..++.+++|+.|+++++
T Consensus       197 ~l~~N~l~~~~l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          197 NCDTNNITKLDLNQNIQLTFLDCSSN  222 (457)
T ss_dssp             ECCSSCCSCCCCTTCTTCSEEECCSS
T ss_pred             ECcCCcCCeeccccCCCCCEEECcCC
Confidence            77761111114677777777777664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.60  E-value=2.2e-15  Score=121.69  Aligned_cols=145  Identities=19%  Similarity=0.232  Sum_probs=117.7

Q ss_pred             cEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccccc-chhhhcC
Q 043587          122 RSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL-PETLCEL  200 (285)
Q Consensus       122 ~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l  200 (285)
                      +.++..++.      ...++.. +  .++++.|+++     +|.+.+..+..+..+++|++|++++|.++.+ |..+.++
T Consensus        14 ~~v~c~~~~------l~~iP~~-l--~~~l~~L~l~-----~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l   79 (220)
T 2v9t_B           14 NIVDCRGKG------LTEIPTN-L--PETITEIRLE-----QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL   79 (220)
T ss_dssp             TEEECTTSC------CSSCCSS-C--CTTCCEEECC-----SSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CEEEcCCCC------cCcCCCc-c--CcCCCEEECC-----CCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC
Confidence            566777766      3343221 2  2689999999     8885544456889999999999999999977 6789999


Q ss_pred             CCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCce
Q 043587          201 YNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICG  276 (285)
Q Consensus       201 ~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~  276 (285)
                      ++|++|++++|. +..+|.. +..+++|++|++++|.+.+..|..|..+++|+.|++++   ....+..+..+++|+.|+
T Consensus        80 ~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  158 (220)
T 2v9t_B           80 RSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH  158 (220)
T ss_dssp             SSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence            999999999998 6677765 68899999999999999887788999999999999998   333445688899999999


Q ss_pred             ecccC
Q 043587          277 IRRLG  281 (285)
Q Consensus       277 i~~~~  281 (285)
                      +.+..
T Consensus       159 L~~N~  163 (220)
T 2v9t_B          159 LAQNP  163 (220)
T ss_dssp             CCSSC
T ss_pred             eCCCC
Confidence            88754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.59  E-value=9e-16  Score=133.19  Aligned_cols=153  Identities=21%  Similarity=0.169  Sum_probs=91.6

Q ss_pred             CCCceeEEEEEecCCccccc-chh-ccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           94 LDEKVRHLMLIIGEGAIFPV-STR-RIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~-~~~-~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      .+..++.|.++.+.+..++. .+. ++++|++|++++|.      ...+++..|..+++|++|+|+     +|.+....+
T Consensus        37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~------i~~i~~~~~~~l~~L~~L~Ls-----~N~l~~~~~  105 (361)
T 2xot_A           37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH------LNFISSEAFVPVPNLRYLDLS-----SNHLHTLDE  105 (361)
T ss_dssp             CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC------CCEECTTTTTTCTTCCEEECC-----SSCCCEECT
T ss_pred             CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc------CCccChhhccCCCCCCEEECC-----CCcCCcCCH
Confidence            45556677777776665333 344 66777777777776      334444556667777777777     666333334


Q ss_pred             ccccccCCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcCcccc----cccCCCceeecCCCCCCcccCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEELPKGI----GKLVNMKHLLNSRTSSVRYMPVGIG  246 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~l----~~l~~L~~L~l~~~~~~~~~p~~~~  246 (285)
                      ..+..+.+|++|++++|.++.+ |..+..+++|+.|++++|. +..+|..+    ..+++|++|++++|.+....+..+.
T Consensus       106 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  184 (361)
T 2xot_A          106 FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ  184 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHH
T ss_pred             HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhh
Confidence            4566677777777777776655 3456667777777777776 55565543    4567777777777765532223444


Q ss_pred             CCCc--CCcccccc
Q 043587          247 RLTG--LRTLGEFT  258 (285)
Q Consensus       247 ~l~~--L~~L~l~~  258 (285)
                      .++.  |+.|++.+
T Consensus       185 ~l~~~~l~~l~l~~  198 (361)
T 2xot_A          185 KLPAWVKNGLYLHN  198 (361)
T ss_dssp             HSCHHHHTTEECCS
T ss_pred             hccHhhcceEEecC
Confidence            5554  25555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.59  E-value=3.8e-16  Score=140.78  Aligned_cols=166  Identities=10%  Similarity=0.044  Sum_probs=108.6

Q ss_pred             CceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc
Q 043587           96 EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE  175 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~  175 (285)
                      .+++.|.+..+.+...+.  ..+++|++|++++|.      ...+.+..+..+++|++|+++     +|.+.+..|..+.
T Consensus        99 ~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~------l~~~~~~~~~~l~~L~~L~Ls-----~N~l~~~~~~~l~  165 (487)
T 3oja_A           99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNK------ITMLRDLDEGCRSRVQYLDLK-----LNEIDTVNFAELA  165 (487)
T ss_dssp             TTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSC------CCSGGGBCGGGGSSEEEEECT-----TSCCCEEEGGGGG
T ss_pred             CCcCEEECcCCcCCCCCc--cccCCCCEEECCCCC------CCCCCchhhcCCCCCCEEECC-----CCCCCCcChHHHh
Confidence            456666666665554332  245677777777776      333345456777777777777     7775555566665


Q ss_pred             -ccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          176 -KLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       176 -~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                       .+++|++|++++|.++.+|. ...+++|++|++++|. +..+|+.++.+++|+.|++++|.+. .+|..++.+++|+.|
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L  242 (487)
T 3oja_A          166 ASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF  242 (487)
T ss_dssp             GGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred             hhCCcccEEecCCCccccccc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEE
Confidence             57777777777777776653 3457777777777776 5566666777777777777777666 467777777777777


Q ss_pred             cccc---c-cCCccccccCCcCCCcee
Q 043587          255 GEFT---K-ACRLESLKNLEHLQICGI  277 (285)
Q Consensus       255 ~l~~---~-~~~~~~l~~l~~L~~L~i  277 (285)
                      ++++   . ...+..+..++.|+.+++
T Consensus       243 ~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          243 DLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             ECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             EcCCCCCcCcchHHHHHhCCCCcEEec
Confidence            7776   1 233444566666665554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.59  E-value=4.7e-16  Score=136.09  Aligned_cols=177  Identities=15%  Similarity=0.073  Sum_probs=127.5

Q ss_pred             CCCceeEEEEEecCCcc-----cccchhccccccEEeecCCCCCCCCchhhHHHH----HHhcC---------Cccceee
Q 043587           94 LDEKVRHLMLIIGEGAI-----FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEE----LFREL---------TSLRALD  155 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~----~~~~~---------~~L~~L~  155 (285)
                      ...+++.|.+..+.+..     ++..+..+++|++|++++|.      .....+.    .+..+         ++|++|+
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~------l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~  165 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG------LGPQAGAKIARALQELAVNKKAKNAPPLRSII  165 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC------CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC------CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence            35678888888887765     45577888889999998887      3322222    23334         8889999


Q ss_pred             ecccccccccCC-Cccc---ccccccCCCceEeccccccc------ccchhhhcCCCccEEecCCCCCc----CcCcccc
Q 043587          156 FCESYHSRSSLT-PEIP---RNIEKLVHLRYLSLSFQHIE------KLPETLCELYNLETLDISGCFDL----EELPKGI  221 (285)
Q Consensus       156 L~~~~~~~~~~~-~~~p---~~i~~l~~L~~L~l~~~~l~------~lp~~i~~l~~L~~L~l~~~~~~----~~lp~~l  221 (285)
                      ++     +|.+. ..+|   ..+..+++|++|++++|.++      -+|..+..+++|++|++++|...    ..+|..+
T Consensus       166 L~-----~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l  240 (386)
T 2ca6_A          166 CG-----RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL  240 (386)
T ss_dssp             CC-----SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred             CC-----CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence            98     77744 2344   46667888999999998877      23337778888999999988832    5677788


Q ss_pred             cccCCCceeecCCCCCCcc----cCCCC--CCCCcCCcccccc---cc----CCcccc-ccCCcCCCceecccC
Q 043587          222 GKLVNMKHLLNSRTSSVRY----MPVGI--GRLTGLRTLGEFT---KA----CRLESL-KNLEHLQICGIRRLG  281 (285)
Q Consensus       222 ~~l~~L~~L~l~~~~~~~~----~p~~~--~~l~~L~~L~l~~---~~----~~~~~l-~~l~~L~~L~i~~~~  281 (285)
                      ..+++|++|++++|.+.+.    +|..+  +.+++|++|++++   ..    ..+..+ .++++|+.|+++++.
T Consensus       241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            8888999999998877654    45555  4488889998887   22    245555 567888888888764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.5e-15  Score=114.85  Aligned_cols=126  Identities=28%  Similarity=0.314  Sum_probs=71.2

Q ss_pred             cccccEEeecCCCCCCCCch-hhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccc-cch
Q 043587          118 IKRMRSLLIDGGRSDHSSLN-GEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK-LPE  195 (285)
Q Consensus       118 l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~-lp~  195 (285)
                      .++|+.|++++|.     +. +.+ +..+..+++|++|+++     +|.+.+ + ..++.+++|++|++++|.++. +|.
T Consensus        16 ~~~l~~L~l~~n~-----l~~~~~-~~~~~~l~~L~~L~l~-----~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~   82 (149)
T 2je0_A           16 PSDVKELVLDNSR-----SNEGKL-EGLTDEFEELEFLSTI-----NVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEV   82 (149)
T ss_dssp             GGGCSEEECTTCB-----CBTTBC-CSCCTTCTTCCEEECT-----TSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHH
T ss_pred             CccCeEEEccCCc-----CChhHH-HHHHhhcCCCcEEECc-----CCCCCC-c-hhhhcCCCCCEEECCCCcccchHHH
Confidence            3566666666665     22 132 3335566666666666     555332 2 455666666666666666665 555


Q ss_pred             hhhcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCCcccC---CCCCCCCcCCccccc
Q 043587          196 TLCELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSVRYMP---VGIGRLTGLRTLGEF  257 (285)
Q Consensus       196 ~i~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~p---~~~~~l~~L~~L~l~  257 (285)
                      .++.+++|++|++++|. ++.+|  ..++.+++|++|++++|.+.+..+   ..++.+++|+.|+++
T Consensus        83 ~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           83 LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             HhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            55556666666666665 44433  556666666666666665543222   245556666665554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=6.6e-16  Score=116.90  Aligned_cols=125  Identities=18%  Similarity=0.130  Sum_probs=83.7

Q ss_pred             CCccceeeecccccccccCC-CcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCC
Q 043587          148 LTSLRALDFCESYHSRSSLT-PEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVN  226 (285)
Q Consensus       148 ~~~L~~L~L~~~~~~~~~~~-~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~  226 (285)
                      .++|+.|+++     +|.+. +.+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|...+.+|..++.+++
T Consensus        16 ~~~l~~L~l~-----~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           16 PSDVKELVLD-----NSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             GGGCSEEECT-----TCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             CccCeEEEcc-----CCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            4567777777     66644 46676667777777777777777766 56677777777777777743336666666777


Q ss_pred             CceeecCCCCCCcc-cCCCCCCCCcCCcccccc--ccCCc----cccccCCcCCCceec
Q 043587          227 MKHLLNSRTSSVRY-MPVGIGRLTGLRTLGEFT--KACRL----ESLKNLEHLQICGIR  278 (285)
Q Consensus       227 L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~--~~~~~----~~l~~l~~L~~L~i~  278 (285)
                      |++|++++|.+.+. .|..++.+++|++|++++  -...+    ..+..+++|+.|+++
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            77777777766542 336677777777777776  11122    346777777777664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=7e-15  Score=138.50  Aligned_cols=154  Identities=21%  Similarity=0.194  Sum_probs=85.0

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ...++++.+..+.....+..+.....|+.+.+......... .. +++..+..++.|+.|+|+     +|. +..+|..+
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~-~~-~~~~~~~~l~~L~~L~Ls-----~n~-l~~l~~~~  243 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENR-MV-MPKDSKYDDQLWHALDLS-----NLQ-IFNISANI  243 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECT-----TSC-CSCCCGGG
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccc-ee-cChhhhccCCCCcEEECC-----CCC-CCCCChhh
Confidence            44577777776666544444434444444433322100000 11 346667788888888888     777 45777777


Q ss_pred             cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                      ..+++|++|+|++|.++.+|..++++++|++|+|++|. +..+|..++.|++|++|++++|.+. .+|..|+.+++|++|
T Consensus       244 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L  321 (727)
T 4b8c_D          244 FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL  321 (727)
T ss_dssp             GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred             cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence            78888888888888888888888888888888888887 5578888888888888888888664 778888888888888


Q ss_pred             cccc
Q 043587          255 GEFT  258 (285)
Q Consensus       255 ~l~~  258 (285)
                      ++++
T Consensus       322 ~L~~  325 (727)
T 4b8c_D          322 GVEG  325 (727)
T ss_dssp             ECTT
T ss_pred             eCCC
Confidence            8876

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.58  E-value=1.4e-15  Score=131.97  Aligned_cols=168  Identities=21%  Similarity=0.170  Sum_probs=127.1

Q ss_pred             eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHh-cCCccceeeecccccccccCCCccccccccc
Q 043587           99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFR-ELTSLRALDFCESYHSRSSLTPEIPRNIEKL  177 (285)
Q Consensus        99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l  177 (285)
                      +.+.+..+.+..+|..+.  ..++.|++++|.      ...+++..|. .+++|+.|+|+     +|++.+..+..+..+
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~------l~~l~~~~~~~~l~~L~~L~L~-----~N~i~~i~~~~~~~l   87 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNN------LSRLRAEWTPTRLTNLHSLLLS-----HNHLNFISSEAFVPV   87 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSC------CCEECTTSSSSCCTTCCEEECC-----SSCCCEECTTTTTTC
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCC------CCccChhhhhhcccccCEEECC-----CCcCCccChhhccCC
Confidence            456666676666665443  468999999998      4454566566 89999999999     888555455678999


Q ss_pred             CCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCC-C---CCCCcCC
Q 043587          178 VHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVG-I---GRLTGLR  252 (285)
Q Consensus       178 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~-~---~~l~~L~  252 (285)
                      ++|++|++++|.++.+|. .+.++++|++|++++|......|..+..+++|++|++++|.+. .+|.. +   ..+++|+
T Consensus        88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLM  166 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCC
T ss_pred             CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCC
Confidence            999999999999998875 5788999999999999854445778999999999999999877 45544 3   6799999


Q ss_pred             cccccc---ccCCccccccCCc--CCCceeccc
Q 043587          253 TLGEFT---KACRLESLKNLEH--LQICGIRRL  280 (285)
Q Consensus       253 ~L~l~~---~~~~~~~l~~l~~--L~~L~i~~~  280 (285)
                      .|++++   ....+..+..++.  |+.|++.+.
T Consensus       167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             EEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            999988   3223345666665  367777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=3.7e-15  Score=115.08  Aligned_cols=126  Identities=28%  Similarity=0.310  Sum_probs=80.9

Q ss_pred             cccccEEeecCCCCCCCCch-hhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccc-cch
Q 043587          118 IKRMRSLLIDGGRSDHSSLN-GEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK-LPE  195 (285)
Q Consensus       118 l~~L~~L~l~~~~~~~~~l~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~-lp~  195 (285)
                      .++|+.|++++|.     +. +.+ +..+..+++|++|+++     +|.+. .+ ..+..+++|++|++++|.++. +|.
T Consensus        23 ~~~L~~L~l~~n~-----l~~~~i-~~~~~~l~~L~~L~l~-----~n~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~   89 (168)
T 2ell_A           23 PAAVRELVLDNCK-----SNDGKI-EGLTAEFVNLEFLSLI-----NVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDM   89 (168)
T ss_dssp             TTSCSEEECCSCB-----CBTTBC-SSCCGGGGGCCEEEEE-----SSCCC-CC-SSCCCCSSCCEEEEESCCCCSCCCH
T ss_pred             cccCCEEECCCCC-----CChhhH-HHHHHhCCCCCEEeCc-----CCCCC-Ch-hhhccCCCCCEEECcCCcCchHHHH
Confidence            3667777777776     22 233 3335667777777777     66633 33 566677777777777777665 555


Q ss_pred             hhhcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCCcccCC----CCCCCCcCCcccccc
Q 043587          196 TLCELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSVRYMPV----GIGRLTGLRTLGEFT  258 (285)
Q Consensus       196 ~i~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~l~~  258 (285)
                      .+..+++|++|++++|. +..+|  ..+..+++|++|++++|.+. ..|.    .+..+++|+.|++.+
T Consensus        90 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A           90 LAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             HHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEE
T ss_pred             HHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCC
Confidence            55567777777777776 55554  56677777777777777665 3333    566677777776665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.57  E-value=1.2e-14  Score=129.99  Aligned_cols=159  Identities=17%  Similarity=0.163  Sum_probs=89.8

Q ss_pred             CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ...+++.|.+..+.+...+  +..+++|++|++++|.      ...+ +  +..+++|++|+++     +|.+.+ ++  
T Consensus        83 ~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~------l~~l-~--~~~l~~L~~L~l~-----~N~l~~-l~--  143 (457)
T 3bz5_A           83 QNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK------LTKL-D--VSQNPLLTYLNCA-----RNTLTE-ID--  143 (457)
T ss_dssp             TCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC------CSCC-C--CTTCTTCCEEECT-----TSCCSC-CC--
T ss_pred             cCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc------CCee-c--CCCCCcCCEEECC-----CCccce-ec--
Confidence            3456666666666655442  5566666666666665      2222 1  5566666666666     555333 32  


Q ss_pred             ccccCCCceEeccccc-ccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587          174 IEKLVHLRYLSLSFQH-IEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR  252 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~  252 (285)
                      ++.+++|++|++++|. +..+  .++.+++|+.|++++|. ++.+|  ++.+++|++|++++|.+.+.   .++.+++|+
T Consensus       144 l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~  215 (457)
T 3bz5_A          144 VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLT  215 (457)
T ss_dssp             CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCS
T ss_pred             cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec--cccCCCCCEEECcCCcCCee---ccccCCCCC
Confidence            5566666666666663 4444  25566666666666665 44454  55666666666666655532   256666666


Q ss_pred             cccccc-ccCCccccccCCcCCCceeccc
Q 043587          253 TLGEFT-KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       253 ~L~l~~-~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      .|++++ .-..+. ++.+++|+.|+++++
T Consensus       216 ~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          216 FLDCSSNKLTEID-VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             EEECCSSCCSCCC-CTTCTTCSEEECCSS
T ss_pred             EEECcCCcccccC-ccccCCCCEEEeeCC
Confidence            666665 111111 556666666665543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=7.6e-16  Score=145.07  Aligned_cols=122  Identities=22%  Similarity=0.218  Sum_probs=98.5

Q ss_pred             cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccc
Q 043587          111 FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHI  190 (285)
Q Consensus       111 ~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l  190 (285)
                      .+..+..+.+|+.|++++|.      ...+++. +..+++|++|+|+     +|.+. .+|..++.+++|++|+|++|.+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~------l~~l~~~-~~~l~~L~~L~Ls-----~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQ------IFNISAN-IFKYDFLTRLYLN-----GNSLT-ELPAEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             ------CCCCCCEEECTTSC------CSCCCGG-GGGCCSCSCCBCT-----TSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred             ChhhhccCCCCcEEECCCCC------CCCCChh-hcCCCCCCEEEee-----CCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence            45677888999999999998      3354333 5589999999999     88844 8888899999999999999999


Q ss_pred             cccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCC
Q 043587          191 EKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIG  246 (285)
Q Consensus       191 ~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~  246 (285)
                      +.+|..++.+++|++|+|++|. ++.+|..|+.+++|++|++++|.+.+..|..+.
T Consensus       283 ~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          283 TSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             SSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             CccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence            9999999999999999999997 778898899999999999999988876665443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.54  E-value=1.1e-14  Score=125.75  Aligned_cols=38  Identities=8%  Similarity=0.132  Sum_probs=31.5

Q ss_pred             CCCCceeEEEEEecCCccccc-chhccccccEEeecCCC
Q 043587           93 SLDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGR  130 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~  130 (285)
                      ..+.+++.|.++.+.+..++. +|.++++|++|++++|.
T Consensus        27 ~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   65 (350)
T 4ay9_X           27 DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND   65 (350)
T ss_dssp             TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT
T ss_pred             CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC
Confidence            456788999999998887664 68889999999998887

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=6.1e-15  Score=114.81  Aligned_cols=128  Identities=21%  Similarity=0.195  Sum_probs=96.5

Q ss_pred             chhccccccEEeecCCCCCCCCchhhHHHHHHhcC-CccceeeecccccccccCCCcccccccccCCCceEecccccccc
Q 043587          114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFREL-TSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK  192 (285)
Q Consensus       114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~  192 (285)
                      .+.++.+|+.|++.+|.      ...+ +. +..+ ++|++|+++     +|. ...+ ..++.+++|++|++++|.++.
T Consensus        14 ~~~~~~~L~~L~l~~n~------l~~i-~~-~~~~~~~L~~L~Ls-----~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~   78 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYK------IPVI-EN-LGATLDQFDAIDFS-----DNE-IRKL-DGFPLLRRLKTLLVNNNRICR   78 (176)
T ss_dssp             EEECTTSCEEEECTTSC------CCSC-CC-GGGGTTCCSEEECC-----SSC-CCEE-CCCCCCSSCCEEECCSSCCCE
T ss_pred             hcCCcCCceEEEeeCCC------Cchh-HH-hhhcCCCCCEEECC-----CCC-CCcc-cccccCCCCCEEECCCCcccc
Confidence            44567788888888887      3333 33 3334 488888888     777 4444 577888888888888888888


Q ss_pred             cchhh-hcCCCccEEecCCCCCcCcCcc--cccccCCCceeecCCCCCCcccCCC----CCCCCcCCcccccc
Q 043587          193 LPETL-CELYNLETLDISGCFDLEELPK--GIGKLVNMKHLLNSRTSSVRYMPVG----IGRLTGLRTLGEFT  258 (285)
Q Consensus       193 lp~~i-~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~----~~~l~~L~~L~l~~  258 (285)
                      +|+.+ +.+++|++|++++|. ++.+|.  .+..+++|++|++++|++. ..|..    ++.+++|+.|++..
T Consensus        79 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           79 IGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             ECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred             cCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCc
Confidence            87655 788888888888887 677776  7788888888888888775 56664    77888888888776

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.53  E-value=7.5e-15  Score=115.97  Aligned_cols=131  Identities=20%  Similarity=0.193  Sum_probs=101.6

Q ss_pred             eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHH-HHhcCCccceeeecccccccccCCCccccccccc
Q 043587           99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEE-LFRELTSLRALDFCESYHSRSSLTPEIPRNIEKL  177 (285)
Q Consensus        99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l  177 (285)
                      +.+.+..+.+..+|..+..  ++++|++.+|.      ...+++. .|..+++|++|+++     +|.+.+..|..+..+
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~------i~~~~~~~~~~~l~~L~~L~Ls-----~N~l~~~~~~~~~~l   77 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE------LGRISSDGLFGRLPHLVKLELK-----RNQLTGIEPNAFEGA   77 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCC------CCSBCCSCSGGGCTTCCEEECC-----SSCCCCBCTTTTTTC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCc------CCccCCccccccCCCCCEEECC-----CCCCCCcCHhHcCCc
Confidence            4566666666666665433  88999999987      3333332 47889999999999     888666668888899


Q ss_pred             CCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccC
Q 043587          178 VHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMP  242 (285)
Q Consensus       178 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p  242 (285)
                      ++|++|++++|.++.++. .+.++++|++|++++|+..+..|..+..+++|++|++++|++....+
T Consensus        78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            999999999999887765 47789999999999998555567788899999999999998775443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.53  E-value=4.3e-14  Score=130.29  Aligned_cols=145  Identities=19%  Similarity=0.303  Sum_probs=123.8

Q ss_pred             CCCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR  172 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~  172 (285)
                      ....+++.|.+..+.+..++. +..+++|+.|++++|.      ...+ + .+..+++|+.|+|+     +|.+ ..++ 
T Consensus        62 ~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~------l~~l-~-~l~~l~~L~~L~Ls-----~N~l-~~l~-  125 (605)
T 1m9s_A           62 QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK------IKDL-S-SLKDLKKLKSLSLE-----HNGI-SDIN-  125 (605)
T ss_dssp             GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC------CCCC-T-TSTTCTTCCEEECT-----TSCC-CCCG-
T ss_pred             ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC------CCCC-h-hhccCCCCCEEEec-----CCCC-CCCc-
Confidence            457899999999998887665 8999999999999998      3333 3 38889999999999     8884 4444 


Q ss_pred             cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587          173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR  252 (285)
Q Consensus       173 ~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~  252 (285)
                      .+..+++|+.|+|++|.++.+ +.++.+++|+.|+|++|. +..+++ +..+++|++|++++|.+.+ +| .+..+++|+
T Consensus       126 ~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~  200 (605)
T 1m9s_A          126 GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLD  200 (605)
T ss_dssp             GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred             cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCC
Confidence            688999999999999999988 578999999999999998 666655 9999999999999998874 44 689999999


Q ss_pred             cccccc
Q 043587          253 TLGEFT  258 (285)
Q Consensus       253 ~L~l~~  258 (285)
                      .|++++
T Consensus       201 ~L~L~~  206 (605)
T 1m9s_A          201 VLELFS  206 (605)
T ss_dssp             EEECCS
T ss_pred             EEEccC
Confidence            999988

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.53  E-value=4.6e-14  Score=111.41  Aligned_cols=123  Identities=18%  Similarity=0.109  Sum_probs=100.6

Q ss_pred             cEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc-cccccCCCceEeccccccccc-chhhhc
Q 043587          122 RSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR-NIEKLVHLRYLSLSFQHIEKL-PETLCE  199 (285)
Q Consensus       122 ~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~-~i~~l~~L~~L~l~~~~l~~l-p~~i~~  199 (285)
                      ++++++++.      ...++.. +  ..++++|+++     +|.+.+..+. .++.+++|++|++++|.++.+ |..+++
T Consensus        11 ~~l~~s~~~------l~~ip~~-~--~~~l~~L~l~-----~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~   76 (192)
T 1w8a_A           11 TTVDCTGRG------LKEIPRD-I--PLHTTELLLN-----DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG   76 (192)
T ss_dssp             TEEECTTSC------CSSCCSC-C--CTTCSEEECC-----SCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred             CEEEcCCCC------cCcCccC-C--CCCCCEEECC-----CCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence            788998887      4454322 2  2389999999     8884443333 488999999999999999877 668899


Q ss_pred             CCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587          200 LYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       200 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  258 (285)
                      +++|++|++++|...+..|..+..+++|++|++++|.+.+..|..++.+++|++|++.+
T Consensus        77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence            99999999999984444455688999999999999999988899999999999999988

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.52  E-value=3.3e-15  Score=130.71  Aligned_cols=177  Identities=15%  Similarity=0.151  Sum_probs=131.9

Q ss_pred             CCCceeEEEEEecCCcc----cccc-------hhccccccEEeecCCCCCCCCchhh---HHHHHHhcCCccceeeeccc
Q 043587           94 LDEKVRHLMLIIGEGAI----FPVS-------TRRIKRMRSLLIDGGRSDHSSLNGE---ILEELFRELTSLRALDFCES  159 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~----~~~~-------~~~l~~L~~L~l~~~~~~~~~l~~~---~~~~~~~~~~~L~~L~L~~~  159 (285)
                      ...+++.|.+..+....    +|..       +..+++|++|++++|..     ...   ..+..+..+++|++|+++  
T Consensus        58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-----~~~~~~~l~~~l~~~~~L~~L~L~--  130 (386)
T 2ca6_A           58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-----GPTAQEPLIDFLSKHTPLEHLYLH--  130 (386)
T ss_dssp             TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC-----CTTTHHHHHHHHHHCTTCCEEECC--
T ss_pred             hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC-----CHHHHHHHHHHHHhCCCCCEEECc--
Confidence            46688999988864432    2323       36789999999999982     321   246668899999999999  


Q ss_pred             ccccccCCCc----cccccccc---------CCCceEeccccccc--ccc---hhhhcCCCccEEecCCCCCcC------
Q 043587          160 YHSRSSLTPE----IPRNIEKL---------VHLRYLSLSFQHIE--KLP---ETLCELYNLETLDISGCFDLE------  215 (285)
Q Consensus       160 ~~~~~~~~~~----~p~~i~~l---------~~L~~L~l~~~~l~--~lp---~~i~~l~~L~~L~l~~~~~~~------  215 (285)
                         +|.+...    ++..+..+         ++|++|++++|.++  .+|   ..+..+++|++|++++|. ++      
T Consensus       131 ---~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~  206 (386)
T 2ca6_A          131 ---NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEH  206 (386)
T ss_dssp             ---SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHH
T ss_pred             ---CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHH
Confidence               8875433    33334444         89999999999986  444   467788999999999998 54      


Q ss_pred             cCcccccccCCCceeecCCCCCC----cccCCCCCCCCcCCcccccc---cc----CCcccc--ccCCcCCCceecccC
Q 043587          216 ELPKGIGKLVNMKHLLNSRTSSV----RYMPVGIGRLTGLRTLGEFT---KA----CRLESL--KNLEHLQICGIRRLG  281 (285)
Q Consensus       216 ~lp~~l~~l~~L~~L~l~~~~~~----~~~p~~~~~l~~L~~L~l~~---~~----~~~~~l--~~l~~L~~L~i~~~~  281 (285)
                      ..|..+..+++|++|++++|.+.    +.+|..+..+++|++|++++   ..    ..+..+  +.+++|+.|+++++.
T Consensus       207 l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             HHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            34447889999999999999875    56788889999999999987   11    134555  348899999998764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.51  E-value=4.4e-14  Score=129.09  Aligned_cols=155  Identities=19%  Similarity=0.151  Sum_probs=121.7

Q ss_pred             CCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccc
Q 043587           94 LDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRN  173 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~  173 (285)
                      ...+++.|.++.+.+..+|   ..+++|++|++++|.      ...+ |. +..  +|++|+++     +|.+. .+|. 
T Consensus        78 l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~------l~~i-p~-l~~--~L~~L~Ls-----~N~l~-~lp~-  137 (571)
T 3cvr_A           78 LPPQITVLEITQNALISLP---ELPASLEYLDACDNR------LSTL-PE-LPA--SLKHLDVD-----NNQLT-MLPE-  137 (571)
T ss_dssp             CCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC------CSCC-CC-CCT--TCCEEECC-----SSCCS-CCCC-
T ss_pred             HcCCCCEEECcCCCCcccc---cccCCCCEEEccCCC------CCCc-ch-hhc--CCCEEECC-----CCcCC-CCCC-
Confidence            4578999999999888766   557899999999998      3334 33 443  89999999     88844 4776 


Q ss_pred             ccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcC--
Q 043587          174 IEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGL--  251 (285)
Q Consensus       174 i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--  251 (285)
                        .+++|++|++++|.++.+|.   .+++|++|++++|. ++.+|. +.  ++|++|++++|.+. .+|. +..  +|  
T Consensus       138 --~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~  204 (571)
T 3cvr_A          138 --LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHH  204 (571)
T ss_dssp             --CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC-------
T ss_pred             --cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhc
Confidence              57899999999999998886   57889999999998 666887 65  89999999999777 7777 654  67  


Q ss_pred             -----Ccccccc--ccCCccccccCCcCCCceecccC
Q 043587          252 -----RTLGEFT--KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       252 -----~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                           +.|++++  -...+..+..+++|+.|+++++.
T Consensus       205 ~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          205 SEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             ---CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             ccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence                 8899888  44567778889999999988764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.49  E-value=2e-13  Score=107.90  Aligned_cols=122  Identities=15%  Similarity=0.082  Sum_probs=98.6

Q ss_pred             cEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccch-hhhcC
Q 043587          122 RSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCEL  200 (285)
Q Consensus       122 ~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l  200 (285)
                      ++++++++.      ...++..   -.++|++|+++     +|. +..+|..+..+.+|++|++++|.++.++. .+.++
T Consensus        13 ~~l~~~~~~------l~~ip~~---~~~~l~~L~L~-----~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l   77 (193)
T 2wfh_A           13 TVVRCSNKG------LKVLPKG---IPRDVTELYLD-----GNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM   77 (193)
T ss_dssp             TEEECTTSC------CSSCCSC---CCTTCCEEECC-----SSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CEEEcCCCC------CCcCCCC---CCCCCCEEECC-----CCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCC
Confidence            578888887      4444322   23689999999     888 56788889999999999999999998874 58899


Q ss_pred             CCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587          201 YNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       201 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  258 (285)
                      ++|++|++++|......|..+..+++|++|++++|.+....+..+..+++|+.|++.+
T Consensus        78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence            9999999999984444445689999999999999988854445688999999999987

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=3.8e-14  Score=110.29  Aligned_cols=127  Identities=17%  Similarity=0.236  Sum_probs=104.6

Q ss_pred             HhcCCccceeeecccccccccCCCcccccccccC-CCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccc-c
Q 043587          145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLV-HLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGI-G  222 (285)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~-~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l-~  222 (285)
                      +..+.+|+.|+++     +|+ ...+|. +..+. +|++|++++|.++.+ +.++.+++|++|++++|. +..+|..+ +
T Consensus        15 ~~~~~~L~~L~l~-----~n~-l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~   85 (176)
T 1a9n_A           15 YTNAVRDRELDLR-----GYK-IPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQ   85 (176)
T ss_dssp             EECTTSCEEEECT-----TSC-CCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHH
T ss_pred             cCCcCCceEEEee-----CCC-CchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhh
Confidence            4567889999999     888 445654 55554 999999999999988 578999999999999998 67777665 8


Q ss_pred             ccCCCceeecCCCCCCcccCC--CCCCCCcCCcccccc--ccCCccc----cccCCcCCCceecccC
Q 043587          223 KLVNMKHLLNSRTSSVRYMPV--GIGRLTGLRTLGEFT--KACRLES----LKNLEHLQICGIRRLG  281 (285)
Q Consensus       223 ~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~--~~~~~~~----l~~l~~L~~L~i~~~~  281 (285)
                      .+++|++|++++|.+. .+|.  .++.+++|+.|++++  -...+..    +..+++|+.|+++.+.
T Consensus        86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            9999999999999874 6776  789999999999998  2233443    8899999999987764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.45  E-value=1.2e-13  Score=107.49  Aligned_cols=129  Identities=16%  Similarity=0.229  Sum_probs=92.3

Q ss_pred             eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccC
Q 043587           99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLV  178 (285)
Q Consensus        99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~  178 (285)
                      +.+.+..+.+..++..+  .++|++|++++|.      ...+++..|..+++|++|+++     +|.+.+..+..+..++
T Consensus        10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~------l~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~   76 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNK------LQSLPHGVFDKLTQLTKLSLS-----QNQIQSLPDGVFDKLT   76 (177)
T ss_dssp             TEEECCSSCCSSCCTTC--CTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECC-----SSCCCCCCTTTTTTCT
T ss_pred             CEEEecCCCCccCCCCC--CCCCcEEEeCCCc------ccEeCHHHhcCcccccEEECC-----CCcceEeChhHccCCC
Confidence            34555555555455333  3688888888887      334445557788888888888     7774444445567888


Q ss_pred             CCceEecccccccccchh-hhcCCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCCccc
Q 043587          179 HLRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSVRYM  241 (285)
Q Consensus       179 ~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~  241 (285)
                      +|++|++++|.++.+|.. +..+++|++|++++|. ++.+|.. +..+++|++|++++|++.+..
T Consensus        77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            888888888888877754 5778888888888887 5566655 477888888888888766543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.45  E-value=1.4e-13  Score=125.98  Aligned_cols=120  Identities=15%  Similarity=0.103  Sum_probs=102.0

Q ss_pred             cccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhc
Q 043587          120 RMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCE  199 (285)
Q Consensus       120 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~  199 (285)
                      .|+.|++++|.      ...+ |. +..+++|+.|+++     +|. +..+|..++.+++|++|++++|.++.+| .+++
T Consensus       442 ~L~~L~Ls~n~------l~~l-p~-~~~l~~L~~L~Ls-----~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~  506 (567)
T 1dce_A          442 DVRVLHLAHKD------LTVL-CH-LEQLLLVTHLDLS-----HNR-LRALPPALAALRCLEVLQASDNALENVD-GVAN  506 (567)
T ss_dssp             TCSEEECTTSC------CSSC-CC-GGGGTTCCEEECC-----SSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTT
T ss_pred             CceEEEecCCC------CCCC-cC-ccccccCcEeecC-----ccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCC
Confidence            58899999998      4444 45 8999999999999     888 5588999999999999999999999998 8999


Q ss_pred             CCCccEEecCCCCCcCcC--cccccccCCCceeecCCCCCCcccCCCCC----CCCcCCcccc
Q 043587          200 LYNLETLDISGCFDLEEL--PKGIGKLVNMKHLLNSRTSSVRYMPVGIG----RLTGLRTLGE  256 (285)
Q Consensus       200 l~~L~~L~l~~~~~~~~l--p~~l~~l~~L~~L~l~~~~~~~~~p~~~~----~l~~L~~L~l  256 (285)
                      +++|++|++++|. +..+  |..++.+++|++|++++|++.+. |..+.    .+++|+.|++
T Consensus       507 l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          507 LPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQE-EGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGS-SSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCC-ccHHHHHHHHCcccCccCC
Confidence            9999999999998 5555  89999999999999999988754 43433    3778887753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=8.5e-16  Score=122.02  Aligned_cols=132  Identities=19%  Similarity=0.213  Sum_probs=88.4

Q ss_pred             CcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccc
Q 043587          108 GAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSF  187 (285)
Q Consensus       108 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~  187 (285)
                      +..++..+..+++|++|++++|.      ...+ + .+..+++|++|+++     +|. ...+|..+..+++|++|++++
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~------l~~l-~-~~~~l~~L~~L~l~-----~n~-l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNN------IEKI-S-SLSGMENLRILSLG-----RNL-IKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEE------ESCC-C-CHHHHTTCCEEEEE-----EEE-ECSCSSHHHHHHHCSEEEEEE
T ss_pred             HhhhhHHHhcCCCCCEEECCCCC------Cccc-c-ccccCCCCCEEECC-----CCC-cccccchhhcCCcCCEEECcC
Confidence            33345567777777777777776      3333 3 46677777777777     666 446666666677777777777


Q ss_pred             ccccccchhhhcCCCccEEecCCCCCcCcCcc--cccccCCCceeecCCCCCCcccCCC----------CCCCCcCCccc
Q 043587          188 QHIEKLPETLCELYNLETLDISGCFDLEELPK--GIGKLVNMKHLLNSRTSSVRYMPVG----------IGRLTGLRTLG  255 (285)
Q Consensus       188 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~----------~~~l~~L~~L~  255 (285)
                      |.++.+| .++.+++|++|++++|. +..+|.  .+..+++|++|++++|++.+..|..          +..+++|+.|+
T Consensus       103 N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          103 NQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            7777766 56777777777777776 555443  5677777777777777666554442          55666666665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.44  E-value=3.8e-13  Score=120.10  Aligned_cols=73  Identities=19%  Similarity=0.263  Sum_probs=35.4

Q ss_pred             CCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587          179 HLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       179 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  258 (285)
                      +|++|++++|.++.+| .++++++|++|++++|. +..+|...   ++|++|++++|.+. .+| .++.+++|++|++++
T Consensus       174 ~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~  246 (454)
T 1jl5_A          174 SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADN  246 (454)
T ss_dssp             TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCS
T ss_pred             cccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCC
Confidence            4444444444444444 34445555555555544 33333221   34555555555443 444 255666666666655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=2.4e-13  Score=107.37  Aligned_cols=124  Identities=16%  Similarity=0.266  Sum_probs=99.0

Q ss_pred             EEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCC
Q 043587          100 HLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVH  179 (285)
Q Consensus       100 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~  179 (285)
                      .+.+..+.+..+|..+.  ++|++|++.+|.      ...+ +..|..+++|++|+++     +|.+.+..+..+..+++
T Consensus        14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~------i~~i-p~~~~~l~~L~~L~Ls-----~N~i~~i~~~~f~~l~~   79 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQ------FTLV-PKELSNYKHLTLIDLS-----NNRISTLSNQSFSNMTQ   79 (193)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECCSSC------CCSC-CGGGGGCTTCCEEECC-----SSCCCCCCTTTTTTCTT
T ss_pred             EEEcCCCCCCcCCCCCC--CCCCEEECCCCc------Cchh-HHHhhcccCCCEEECC-----CCcCCEeCHhHccCCCC
Confidence            45566666665665443  589999999998      4454 3568899999999999     88866656677899999


Q ss_pred             CceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCC
Q 043587          180 LRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSV  238 (285)
Q Consensus       180 L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~  238 (285)
                      |++|++++|.++.+|+ .+.++++|++|++++|. +..+|. .+..+++|++|++++|++.
T Consensus        80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence            9999999999998875 68899999999999998 666665 4788999999999998764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.43  E-value=2.4e-14  Score=124.20  Aligned_cols=174  Identities=13%  Similarity=0.071  Sum_probs=105.0

Q ss_pred             ceeEEEEEecCCcc-cccchhcc-----ccccEEeecCCCCCCCCchhhHHHH----HHhcC-Cccceeeeccccccccc
Q 043587           97 KVRHLMLIIGEGAI-FPVSTRRI-----KRMRSLLIDGGRSDHSSLNGEILEE----LFREL-TSLRALDFCESYHSRSS  165 (285)
Q Consensus        97 ~l~~L~l~~~~~~~-~~~~~~~l-----~~L~~L~l~~~~~~~~~l~~~~~~~----~~~~~-~~L~~L~L~~~~~~~~~  165 (285)
                      +++.|.+..+.+.. .+..+..+     ++|++|++++|.      .....+.    .+..+ ++|++|+++     +|.
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~Ls-----~N~  120 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF------LSYKSSDELVKTLAAIPFTITVLDLG-----WND  120 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC------GGGSCHHHHHHHHHTSCTTCCEEECC-----SSC
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc------CChHHHHHHHHHHHhCCCCccEEECc-----CCc
Confidence            67777777776655 23444554     777777777776      2221222    23444 677788877     666


Q ss_pred             CCCccccccc----c-cCCCceEeccccccc-----ccchhhhcCC-CccEEecCCCCCcCcCccccc----cc-CCCce
Q 043587          166 LTPEIPRNIE----K-LVHLRYLSLSFQHIE-----KLPETLCELY-NLETLDISGCFDLEELPKGIG----KL-VNMKH  229 (285)
Q Consensus       166 ~~~~~p~~i~----~-l~~L~~L~l~~~~l~-----~lp~~i~~l~-~L~~L~l~~~~~~~~lp~~l~----~l-~~L~~  229 (285)
                      +.+..+..+.    . ..+|++|++++|.++     .++..+..++ +|++|++++|......+..+.    .. ++|++
T Consensus       121 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~  200 (362)
T 3goz_A          121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTS  200 (362)
T ss_dssp             GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCE
Confidence            4433333332    2 247888888888766     4445555555 788888888874344443333    34 47888


Q ss_pred             eecCCCCCCcc----cCCCCCCC-CcCCcccccc---ccCC----ccccccCCcCCCceecccC
Q 043587          230 LLNSRTSSVRY----MPVGIGRL-TGLRTLGEFT---KACR----LESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       230 L~l~~~~~~~~----~p~~~~~l-~~L~~L~l~~---~~~~----~~~l~~l~~L~~L~i~~~~  281 (285)
                      |++++|.+...    ++..+... ++|++|++++   ....    ...+..+++|+.|+++++.
T Consensus       201 L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             EECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            88888866541    44445553 4788888877   2211    2334667778888877653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.43  E-value=4.8e-13  Score=122.22  Aligned_cols=149  Identities=19%  Similarity=0.161  Sum_probs=118.5

Q ss_pred             ceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccc
Q 043587           97 KVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEK  176 (285)
Q Consensus        97 ~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~  176 (285)
                      +++.|++..+.+..+|..+  +++|++|++++|.      ...++    ..+++|++|+++     +|.+.+ +|. +..
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~------l~~ip----~~l~~L~~L~Ls-----~N~l~~-ip~-l~~  120 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNA------LISLP----ELPASLEYLDAC-----DNRLST-LPE-LPA  120 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC------CSCCC----CCCTTCCEEECC-----SSCCSC-CCC-CCT
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCC------Ccccc----cccCCCCEEEcc-----CCCCCC-cch-hhc
Confidence            7888999998887777655  3889999999998      33543    457899999999     888444 777 665


Q ss_pred             cCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccc
Q 043587          177 LVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGE  256 (285)
Q Consensus       177 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  256 (285)
                        +|++|++++|.++.+|.   .+++|++|++++|. ++.+|.   .+++|++|++++|.+.+ +|. +.  ++|+.|++
T Consensus       121 --~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~L  187 (571)
T 3cvr_A          121 --SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDV  187 (571)
T ss_dssp             --TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEEC
T ss_pred             --CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEEC
Confidence              99999999999999987   68999999999998 667886   67899999999998875 887 66  89999999


Q ss_pred             cc--ccCCccccccCCcC-------CCceeccc
Q 043587          257 FT--KACRLESLKNLEHL-------QICGIRRL  280 (285)
Q Consensus       257 ~~--~~~~~~~l~~l~~L-------~~L~i~~~  280 (285)
                      ++  -...+. +..  +|       +.|+++++
T Consensus       188 s~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N  217 (571)
T 3cvr_A          188 STNLLESLPA-VPV--RNHHSEETEIFFRCREN  217 (571)
T ss_dssp             CSSCCSSCCC-CC----------CCEEEECCSS
T ss_pred             cCCCCCchhh-HHH--hhhcccccceEEecCCC
Confidence            98  223333 443  56       88888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=1e-15  Score=121.51  Aligned_cols=130  Identities=24%  Similarity=0.208  Sum_probs=107.0

Q ss_pred             HHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccc
Q 043587          142 EELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGI  221 (285)
Q Consensus       142 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l  221 (285)
                      +..+..+++|++|+++     +|. ...+| .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .+
T Consensus        41 ~~~~~~l~~L~~L~ls-----~n~-l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~  111 (198)
T 1ds9_A           41 DATLSTLKACKHLALS-----TNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GI  111 (198)
T ss_dssp             HHHHHHTTTCSEEECS-----EEE-ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HH
T ss_pred             hHHHhcCCCCCEEECC-----CCC-Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-cc
Confidence            3468999999999999     888 44477 8899999999999999999999888888999999999998 67777 68


Q ss_pred             cccCCCceeecCCCCCCcccC--CCCCCCCcCCcccccc---ccCCcc----------ccccCCcCCCceecccC
Q 043587          222 GKLVNMKHLLNSRTSSVRYMP--VGIGRLTGLRTLGEFT---KACRLE----------SLKNLEHLQICGIRRLG  281 (285)
Q Consensus       222 ~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~---~~~~~~----------~l~~l~~L~~L~i~~~~  281 (285)
                      +.+++|++|++++|.+.. +|  ..+..+++|++|++.+   ....+.          .+..+++|+.|+-..+.
T Consensus       112 ~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~  185 (198)
T 1ds9_A          112 EKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD  185 (198)
T ss_dssp             HHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred             ccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence            999999999999998764 33  3688999999999988   222222          27888889988755443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.42  E-value=2.4e-14  Score=124.22  Aligned_cols=174  Identities=13%  Similarity=0.032  Sum_probs=125.7

Q ss_pred             CceeEEEEEecCCcc-cccc----hhcc-ccccEEeecCCCCCCCCchhhHHHHH----Hhc-CCccceeeecccccccc
Q 043587           96 EKVRHLMLIIGEGAI-FPVS----TRRI-KRMRSLLIDGGRSDHSSLNGEILEEL----FRE-LTSLRALDFCESYHSRS  164 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~-~~~~----~~~l-~~L~~L~l~~~~~~~~~l~~~~~~~~----~~~-~~~L~~L~L~~~~~~~~  164 (285)
                      .+++.|.+..+.+.. .+..    +..+ ++|++|++++|.      ........    +.. .++|++|+++     +|
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~------l~~~~~~~l~~~l~~~~~~L~~L~Ls-----~N  148 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND------FSSKSSSEFKQAFSNLPASITSLNLR-----GN  148 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC------GGGSCHHHHHHHHTTSCTTCCEEECT-----TS
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc------CCcHHHHHHHHHHHhCCCceeEEEcc-----CC
Confidence            789999999998775 2333    4444 899999999998      33333333    344 3699999999     77


Q ss_pred             cCCC----cccccccccC-CCceEecccccccccc-h----hhhcC-CCccEEecCCCCCcCc-----Cccccccc-CCC
Q 043587          165 SLTP----EIPRNIEKLV-HLRYLSLSFQHIEKLP-E----TLCEL-YNLETLDISGCFDLEE-----LPKGIGKL-VNM  227 (285)
Q Consensus       165 ~~~~----~~p~~i~~l~-~L~~L~l~~~~l~~lp-~----~i~~l-~~L~~L~l~~~~~~~~-----lp~~l~~l-~~L  227 (285)
                      .+..    .++..+..++ +|++|++++|.++..+ .    .+... ++|++|++++|. ++.     ++..+..+ ++|
T Consensus       149 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L  227 (362)
T 3goz_A          149 DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHV  227 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTC
T ss_pred             cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCc
Confidence            7443    3445556665 8999999999987543 2    34445 599999999998 555     66667664 599


Q ss_pred             ceeecCCCCCCccc----CCCCCCCCcCCcccccc-c---------cCCccccccCCcCCCceecccC
Q 043587          228 KHLLNSRTSSVRYM----PVGIGRLTGLRTLGEFT-K---------ACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       228 ~~L~l~~~~~~~~~----p~~~~~l~~L~~L~l~~-~---------~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      ++|++++|.+...-    ...+..+++|++|++++ .         ......+..+++|+.|++++.+
T Consensus       228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            99999999876532    24467889999999987 1         1233456788889999888764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.41  E-value=1e-12  Score=121.40  Aligned_cols=73  Identities=25%  Similarity=0.242  Sum_probs=49.4

Q ss_pred             CCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceec
Q 043587          201 YNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIR  278 (285)
Q Consensus       201 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~  278 (285)
                      ++|+.|++++|. +..+|   ..+++|++|++++|.+. .+|.   .+++|+.|++++  -...+..+.++++|+.|+++
T Consensus       221 ~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          221 SGLKELIVSGNR-LTSLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred             CCCCEEEccCCc-cCcCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence            456666666665 44555   34566777777777655 4555   566788888877  33566778888889888888


Q ss_pred             ccC
Q 043587          279 RLG  281 (285)
Q Consensus       279 ~~~  281 (285)
                      ++.
T Consensus       293 ~N~  295 (622)
T 3g06_A          293 GNP  295 (622)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.40  E-value=1.2e-12  Score=116.86  Aligned_cols=77  Identities=21%  Similarity=0.272  Sum_probs=39.1

Q ss_pred             cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCC
Q 043587          173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR  252 (285)
Q Consensus       173 ~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~  252 (285)
                      .++.+++|++|++++|.++.+|...   ++|++|++++|. +..+| .++.+++|++|++++|.+. .+|..   +++|+
T Consensus       190 ~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~-l~~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~  260 (454)
T 1jl5_A          190 ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI-LEELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLE  260 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCC
T ss_pred             cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCc-CCccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccC
Confidence            3555555555555555555554321   355555555554 44555 2555555555555555444 23332   24455


Q ss_pred             cccccc
Q 043587          253 TLGEFT  258 (285)
Q Consensus       253 ~L~l~~  258 (285)
                      +|++++
T Consensus       261 ~L~l~~  266 (454)
T 1jl5_A          261 ALNVRD  266 (454)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.39  E-value=1.1e-12  Score=121.28  Aligned_cols=120  Identities=19%  Similarity=0.179  Sum_probs=91.1

Q ss_pred             CCCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR  172 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~  172 (285)
                      ..+.+++.|.+..+.+..++.   .+++|++|++++|.      ...++.    .+++|++|+++     +|. ...+|.
T Consensus        58 ~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~------l~~lp~----~l~~L~~L~Ls-----~N~-l~~l~~  118 (622)
T 3g06_A           58 CLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ------LTSLPV----LPPGLLELSIF-----SNP-LTHLPA  118 (622)
T ss_dssp             CCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC------CSCCCC----CCTTCCEEEEC-----SCC-CCCCCC
T ss_pred             hhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc------CCcCCC----CCCCCCEEECc-----CCc-CCCCCC
Confidence            356789999999998887665   67899999999998      334432    68899999999     888 555665


Q ss_pred             cccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccc---ccc--------------CCCceeecCCC
Q 043587          173 NIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGI---GKL--------------VNMKHLLNSRT  235 (285)
Q Consensus       173 ~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l---~~l--------------~~L~~L~l~~~  235 (285)
                         .+.+|++|++++|.++.+|..   +++|++|++++|. +..+|..+   ..|              ++|++|++++|
T Consensus       119 ---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N  191 (622)
T 3g06_A          119 ---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDN  191 (622)
T ss_dssp             ---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             ---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCC
Confidence               567899999999998888864   4788899999887 55555432   223              66777777777


Q ss_pred             CCC
Q 043587          236 SSV  238 (285)
Q Consensus       236 ~~~  238 (285)
                      .+.
T Consensus       192 ~l~  194 (622)
T 3g06_A          192 QLA  194 (622)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            665

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.37  E-value=7.7e-14  Score=124.56  Aligned_cols=177  Identities=15%  Similarity=0.070  Sum_probs=123.0

Q ss_pred             CCceeEEEEEecCCcc-----cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCC----ccceeeeccccccccc
Q 043587           95 DEKVRHLMLIIGEGAI-----FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELT----SLRALDFCESYHSRSS  165 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~----~L~~L~L~~~~~~~~~  165 (285)
                      .++++.+.+..+.+..     ++..+..+++|++|++++|.     +....+...+..++    +|++|+++     +|.
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~L~-----~n~   96 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-----LGDVGVHCVLQGLQTPSCKIQKLSLQ-----NCC   96 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-----CHHHHHHHHHHTTCSTTCCCCEEECT-----TSC
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-----CChHHHHHHHHHHhhCCCceeEEEcc-----CCC
Confidence            4578888888887663     35566777889999998887     34433344445566    68899998     777


Q ss_pred             CCC----cccccccccCCCceEeccccccccc-chhhh-----cCCCccEEecCCCCCcCc----CcccccccCCCceee
Q 043587          166 LTP----EIPRNIEKLVHLRYLSLSFQHIEKL-PETLC-----ELYNLETLDISGCFDLEE----LPKGIGKLVNMKHLL  231 (285)
Q Consensus       166 ~~~----~~p~~i~~l~~L~~L~l~~~~l~~l-p~~i~-----~l~~L~~L~l~~~~~~~~----lp~~l~~l~~L~~L~  231 (285)
                      +..    .+|..+..+++|++|++++|.++.. +..+.     ..++|++|++++|.....    ++..+..+++|++|+
T Consensus        97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  176 (461)
T 1z7x_W           97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT  176 (461)
T ss_dssp             CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred             CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence            442    4577788888999999999887632 22222     256799999999874432    355667788999999


Q ss_pred             cCCCCCCcccCCCCC-----CCCcCCcccccc---cc----CCccccccCCcCCCceecccC
Q 043587          232 NSRTSSVRYMPVGIG-----RLTGLRTLGEFT---KA----CRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       232 l~~~~~~~~~p~~~~-----~l~~L~~L~l~~---~~----~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      +++|.+....+..+.     ..++|++|++++   ..    ..+..+..+++|+.|+++++.
T Consensus       177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence            999876543333332     255888998887   22    135567788999999998763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.37  E-value=1.2e-13  Score=123.23  Aligned_cols=176  Identities=15%  Similarity=0.084  Sum_probs=126.0

Q ss_pred             CCceeEEEEEecCCcc-ccc-chhccc----cccEEeecCCCCCCCCchh---hHHHHHHhcCCccceeeeccccccccc
Q 043587           95 DEKVRHLMLIIGEGAI-FPV-STRRIK----RMRSLLIDGGRSDHSSLNG---EILEELFRELTSLRALDFCESYHSRSS  165 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~-~~~-~~~~l~----~L~~L~l~~~~~~~~~l~~---~~~~~~~~~~~~L~~L~L~~~~~~~~~  165 (285)
                      .++++.|++..+.+.. .+. ....++    +|++|++++|.     +..   ...+..+..+++|++|+++     +|.
T Consensus        55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~L~~L~Ls-----~n~  124 (461)
T 1z7x_W           55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-----LTGAGCGVLSSTLRTLPTLQELHLS-----DNL  124 (461)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-----CBGGGHHHHHHHTTSCTTCCEEECC-----SSB
T ss_pred             CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-----CCHHHHHHHHHHHccCCceeEEECC-----CCc
Confidence            4789999999887754 222 223455    69999999998     232   2347778999999999999     777


Q ss_pred             CCCccccccc-----ccCCCceEecccccccc-----cchhhhcCCCccEEecCCCCCcCcCccccc-----ccCCCcee
Q 043587          166 LTPEIPRNIE-----KLVHLRYLSLSFQHIEK-----LPETLCELYNLETLDISGCFDLEELPKGIG-----KLVNMKHL  230 (285)
Q Consensus       166 ~~~~~p~~i~-----~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~-----~l~~L~~L  230 (285)
                      +....+..+.     ...+|++|++++|.++.     ++..+..+++|++|++++|......+..+.     ..++|++|
T Consensus       125 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L  204 (461)
T 1z7x_W          125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL  204 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEE
T ss_pred             CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEE
Confidence            4433333332     24579999999999774     466777889999999999984333333333     25699999


Q ss_pred             ecCCCCCCcc----cCCCCCCCCcCCcccccc---ccCC-----ccccccCCcCCCceeccc
Q 043587          231 LNSRTSSVRY----MPVGIGRLTGLRTLGEFT---KACR-----LESLKNLEHLQICGIRRL  280 (285)
Q Consensus       231 ~l~~~~~~~~----~p~~~~~l~~L~~L~l~~---~~~~-----~~~l~~l~~L~~L~i~~~  280 (285)
                      ++++|.+...    +|..+..+++|++|++++   ....     ......+++|+.|+++++
T Consensus       205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence            9999987753    566778899999999987   1111     112235889999999887

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.37  E-value=1.5e-12  Score=101.27  Aligned_cols=123  Identities=23%  Similarity=0.193  Sum_probs=97.2

Q ss_pred             ccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchh-hhc
Q 043587          121 MRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPET-LCE  199 (285)
Q Consensus       121 L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~  199 (285)
                      .+.+++.++.      ...++.   .-.++|+.|+++     +|.+.+..+..++.+++|++|++++|.++.+|.. ++.
T Consensus         9 ~~~l~~~~~~------l~~~p~---~~~~~l~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   74 (177)
T 2o6r_A            9 GTEIRCNSKG------LTSVPT---GIPSSATRLELE-----SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK   74 (177)
T ss_dssp             TTEEECCSSC------CSSCCT---TCCTTCSEEECC-----SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CCEEEecCCC------CccCCC---CCCCCCcEEEeC-----CCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC
Confidence            4677777776      333322   234789999999     8885544455678999999999999999988764 589


Q ss_pred             CCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587          200 LYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       200 l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  258 (285)
                      +++|++|++++|. ++.+|. .+..+++|++|++++|.+.+..+..+..+++|++|++.+
T Consensus        75 l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           75 LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence            9999999999998 556655 468999999999999988754444568899999999987

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.32  E-value=3.5e-12  Score=110.06  Aligned_cols=177  Identities=18%  Similarity=0.163  Sum_probs=109.0

Q ss_pred             CCCceeEEEEEecCCcc-cc-cchhccccccEE-eecCCCCCCCCchhhHHHHHHhcCCccceeeecccccc--------
Q 043587           94 LDEKVRHLMLIIGEGAI-FP-VSTRRIKRMRSL-LIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHS--------  162 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~-~~-~~~~~l~~L~~L-~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~--------  162 (285)
                      ...+++.|.++.+.+.. ++ .+|.++++++.+ .+.+|.      ...+++..|..+++|++|++++|.+.        
T Consensus        52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~------l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~  125 (350)
T 4ay9_X           52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN------LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI  125 (350)
T ss_dssp             TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT------CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC
T ss_pred             CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc------ccccCchhhhhccccccccccccccccCCchhhc
Confidence            35677777777776543 22 355666666543 344454      34444555677777777777733211        


Q ss_pred             -----------cccCCCccc-cccccc-CCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCccc-ccccCCCc
Q 043587          163 -----------RSSLTPEIP-RNIEKL-VHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKG-IGKLVNMK  228 (285)
Q Consensus       163 -----------~~~~~~~~p-~~i~~l-~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~  228 (285)
                                 ++..+..+| ..+..+ ..+++|++++|.++.+|..+....+|+.+++.++..++.+|.. +..+++|+
T Consensus       126 ~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~  205 (350)
T 4ay9_X          126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV  205 (350)
T ss_dssp             CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred             ccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccc
Confidence                       211122232 223333 3577888888888888877777778888888876567888764 57888888


Q ss_pred             eeecCCCCCCcccCC-CCCCCCcCCccccccccCCccccccCCcCCCceec
Q 043587          229 HLLNSRTSSVRYMPV-GIGRLTGLRTLGEFTKACRLESLKNLEHLQICGIR  278 (285)
Q Consensus       229 ~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~l~~l~~L~~L~i~  278 (285)
                      +|++++|++. .+|. .+.++.+|+.++...- .....+..+++|+.+++.
T Consensus       206 ~LdLs~N~l~-~lp~~~~~~L~~L~~l~~~~l-~~lP~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          206 ILDISRTRIH-SLPSYGLENLKKLRARSTYNL-KKLPTLEKLVALMEASLT  254 (350)
T ss_dssp             EEECTTSCCC-CCCSSSCTTCCEEECTTCTTC-CCCCCTTTCCSCCEEECS
T ss_pred             hhhcCCCCcC-ccChhhhccchHhhhccCCCc-CcCCCchhCcChhhCcCC
Confidence            8888888766 4543 4566666665555432 222346677777776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.30  E-value=3.5e-12  Score=117.40  Aligned_cols=176  Identities=9%  Similarity=-0.008  Sum_probs=97.8

Q ss_pred             CCceeEEEEEecCCcc-cccchhc-cc-cccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCc--
Q 043587           95 DEKVRHLMLIIGEGAI-FPVSTRR-IK-RMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPE--  169 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~-~~~~~~~-l~-~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--  169 (285)
                      ..+++.|.+..+.... .+..+.. ++ +|++|++.++..    +.....+.....+++|++|+++     +|.+.+.  
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~-----~~~~~~~~~  181 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG----FTTDGLLSIVTHCRKIKTLLME-----ESSFSEKDG  181 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE----EEHHHHHHHHHHCTTCSEEECT-----TCEEECCCS
T ss_pred             CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC----cCHHHHHHHHhhCCCCCEEECc-----cccccCcch
Confidence            4567777777765543 2333333 33 377777777641    1222234445577788888887     6654333  


Q ss_pred             --ccccccccCCCceEeccccccc-----ccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCC---c
Q 043587          170 --IPRNIEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSV---R  239 (285)
Q Consensus       170 --~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~---~  239 (285)
                        ++..+..+++|++|++++|.++     .++..+.++++|+.|++++|. ...+|..+..+++|++|+++.+...   .
T Consensus       182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~  260 (592)
T 3ogk_B          182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMP  260 (592)
T ss_dssp             HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCT
T ss_pred             hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchH
Confidence              3334455677777777777764     344445567777777777776 5556666677777777777643211   1


Q ss_pred             ccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceeccc
Q 043587          240 YMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       240 ~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      ..+..++.+++|+.|++..  ....+..+..+++|+.|+++++
T Consensus       261 ~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~  303 (592)
T 3ogk_B          261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA  303 (592)
T ss_dssp             TSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTC
T ss_pred             HHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCC
Confidence            2223344444555554443  2233333444445555555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.26  E-value=2.2e-11  Score=93.99  Aligned_cols=105  Identities=17%  Similarity=0.237  Sum_probs=81.3

Q ss_pred             cccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchh-hh
Q 043587          120 RMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPET-LC  198 (285)
Q Consensus       120 ~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~  198 (285)
                      ..++++++++.      ...++.. +  .++|++|+++     +|.+.+..|..+..+++|++|++++|.++.+|+. +.
T Consensus        10 ~~~~l~~s~n~------l~~ip~~-~--~~~l~~L~L~-----~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~   75 (170)
T 3g39_A           10 SGTTVDCSGKS------LASVPTG-I--PTTTQVLYLY-----DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD   75 (170)
T ss_dssp             ETTEEECTTSC------CSSCCSC-C--CTTCSEEECC-----SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             CCCEEEeCCCC------cCccCcc-C--CCCCcEEEcC-----CCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence            35788888887      4444322 2  3778899998     8886666677888899999999999998888765 47


Q ss_pred             cCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCc
Q 043587          199 ELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVR  239 (285)
Q Consensus       199 ~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~  239 (285)
                      ++++|++|++++|+ +..+|. .+..+++|++|++++|++..
T Consensus        76 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           76 KLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            88999999999998 666655 47889999999999987654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=2.6e-11  Score=93.96  Aligned_cols=103  Identities=18%  Similarity=0.258  Sum_probs=83.0

Q ss_pred             ccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchh-hhc
Q 043587          121 MRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPET-LCE  199 (285)
Q Consensus       121 L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~  199 (285)
                      -+.++++++.      ...++.. +  .++|++|+++     +|++.+..|..+..+++|++|++++|.++.+|.. +.+
T Consensus        14 ~~~l~~~~n~------l~~iP~~-~--~~~L~~L~Ls-----~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~   79 (174)
T 2r9u_A           14 QTLVNCQNIR------LASVPAG-I--PTDKQRLWLN-----NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK   79 (174)
T ss_dssp             SSEEECCSSC------CSSCCSC-C--CTTCSEEECC-----SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CcEEEeCCCC------CCccCCC-c--CCCCcEEEeC-----CCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence            3678888887      4454322 2  3789999999     8886666678889999999999999999999875 478


Q ss_pred             CCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCCC
Q 043587          200 LYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSSV  238 (285)
Q Consensus       200 l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~  238 (285)
                      +++|++|++++|+ +..+|.. +..+++|++|++++|++.
T Consensus        80 l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           80 LTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCCcc
Confidence            9999999999998 6677665 888999999999999765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.24  E-value=1.7e-12  Score=119.49  Aligned_cols=176  Identities=16%  Similarity=0.106  Sum_probs=106.7

Q ss_pred             ceeEEEEEecCCcc---cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCC----Cc
Q 043587           97 KVRHLMLIIGEGAI---FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLT----PE  169 (285)
Q Consensus        97 ~l~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~----~~  169 (285)
                      +++.|.+..+....   +......+++|++|++.+|.....  .....+..+..+++|+.|+++     +|.+.    +.
T Consensus       139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~~~~~~L~~L~L~-----~n~~~~~~~~~  211 (592)
T 3ogk_B          139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK--DGKWLHELAQHNTSLEVLNFY-----MTEFAKISPKD  211 (592)
T ss_dssp             GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECC--CSHHHHHHHHHCCCCCEEECT-----TCCCSSCCHHH
T ss_pred             cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCc--chhHHHHHHhcCCCccEEEee-----ccCCCccCHHH
Confidence            48888887664211   233344778888888888751100  011134446677888888887     66643    23


Q ss_pred             ccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCC--------------------------cCcCcccccc
Q 043587          170 IPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFD--------------------------LEELPKGIGK  223 (285)
Q Consensus       170 ~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~--------------------------~~~lp~~l~~  223 (285)
                      ++..+..+++|++|++++|.+..+|..+.++++|+.|+++.+..                          ...+|..+..
T Consensus       212 l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~  291 (592)
T 3ogk_B          212 LETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF  291 (592)
T ss_dssp             HHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGG
T ss_pred             HHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhh
Confidence            44555667788888888877777776666777777777653211                          3345555667


Q ss_pred             cCCCceeecCCCCCCcccC-CCCCCCCcCCcccccc---ccCCccccccCCcCCCceecc
Q 043587          224 LVNMKHLLNSRTSSVRYMP-VGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRR  279 (285)
Q Consensus       224 l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~  279 (285)
                      +++|++|++++|.+....+ ..++.+++|++|++..   ..........+++|+.|++++
T Consensus       292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~  351 (592)
T 3ogk_B          292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER  351 (592)
T ss_dssp             GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence            7788888888876443222 2356777777777764   222222335566777777774

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.24  E-value=8.5e-12  Score=96.76  Aligned_cols=112  Identities=19%  Similarity=0.183  Sum_probs=89.6

Q ss_pred             eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccC
Q 043587           99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLV  178 (285)
Q Consensus        99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~  178 (285)
                      +.+.+..+.+..+|..+.  ++|+.|++++|.      ...+++..|..+++|++|+|+     +|++.+..+..+..++
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls-----~N~l~~i~~~~~~~l~   81 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ------ITKLEPGVFDHLVNLQQLYFN-----SNKLTAIPTGVFDKLT   81 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECC-----SSCCCCCCTTTTTTCT
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC------ccccCHHHhcCCcCCCEEECC-----CCCCCccChhHhCCcc
Confidence            567777777777776654  899999999998      445457778999999999999     8884443344568999


Q ss_pred             CCceEecccccccccchh-hhcCCCccEEecCCCCCcCcCccccccc
Q 043587          179 HLRYLSLSFQHIEKLPET-LCELYNLETLDISGCFDLEELPKGIGKL  224 (285)
Q Consensus       179 ~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~l~~l  224 (285)
                      +|++|++++|.++.+|+. +..+++|++|++++|. +...|..+..+
T Consensus        82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~~~l  127 (174)
T 2r9u_A           82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIMYL  127 (174)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGGHHH
T ss_pred             hhhEEECCCCccceeCHHHhccccCCCEEEeCCCC-cccccccHHHH
Confidence            999999999999999875 8899999999999998 66666544443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.21  E-value=1.6e-11  Score=94.76  Aligned_cols=101  Identities=20%  Similarity=0.180  Sum_probs=65.4

Q ss_pred             eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccC
Q 043587           99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLV  178 (285)
Q Consensus        99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~  178 (285)
                      +.+++..+.+..+|..+  .++|++|++++|.      ...+.+..|..+++|++|+|+     +|++.+..+..+..++
T Consensus        12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~------i~~~~~~~~~~l~~L~~L~Ls-----~N~l~~l~~~~f~~l~   78 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQ------ITKLEPGVFDRLTQLTRLDLD-----NNQLTVLPAGVFDKLT   78 (170)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSSC------CCCCCTTTTTTCTTCSEEECC-----SSCCCCCCTTTTTTCT
T ss_pred             CEEEeCCCCcCccCccC--CCCCcEEEcCCCc------CCccChhhhcCcccCCEEECC-----CCCcCccChhhccCCC
Confidence            45566666665555544  2677777777776      333345556777777777777     6664433344456777


Q ss_pred             CCceEecccccccccch-hhhcCCCccEEecCCCC
Q 043587          179 HLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCF  212 (285)
Q Consensus       179 ~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~  212 (285)
                      +|++|++++|.++.+|+ .+.++++|++|++++|.
T Consensus        79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            77777777777777765 36677777777777776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.15  E-value=1.4e-11  Score=113.43  Aligned_cols=132  Identities=14%  Similarity=0.120  Sum_probs=91.2

Q ss_pred             CCceeEEEEEecCCcc-cccchh-ccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccc
Q 043587           95 DEKVRHLMLIIGEGAI-FPVSTR-RIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPR  172 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~  172 (285)
                      ..+++.|.+..+.... .+..+. .+++|++|++.+|..    +....++..+..+++|++|+++     +|.+.+..+.
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~-----~~~i~~~~~~  174 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG----FSTDGLAAIAATCRNLKELDLR-----ESDVDDVSGH  174 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE----EEHHHHHHHHHHCTTCCEEECT-----TCEEECCCGG
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC----CCHHHHHHHHHhCCCCCEEeCc-----CCccCCcchH
Confidence            4578889998876654 233443 678999999988831    2333345656689999999998     6664443333


Q ss_pred             c----ccccCCCceEeccccc--cc--ccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCC
Q 043587          173 N----IEKLVHLRYLSLSFQH--IE--KLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRT  235 (285)
Q Consensus       173 ~----i~~l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~  235 (285)
                      .    ...+++|++|++++|.  +.  .++..+..+++|+.|++++|...+.+|..+..+++|++|++..+
T Consensus       175 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          175 WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            3    3356789999999886  22  23333456789999999998656667777888888888886554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.01  E-value=3.2e-11  Score=104.79  Aligned_cols=153  Identities=16%  Similarity=0.123  Sum_probs=81.7

Q ss_pred             CCceeEEEEEecCCcc-cccchhcc-----ccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCC
Q 043587           95 DEKVRHLMLIIGEGAI-FPVSTRRI-----KRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTP  168 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~-~~~~~~~l-----~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  168 (285)
                      ...++.+++..+.+.. ....+...     ++|+.|++++|.     +...........+++|+.|+|+     +|.+..
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~L~~L~~L~Ls-----~n~l~~  140 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-----LDPAGLRTLLPVFLRARKLGLQ-----LNSLGP  140 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-----CCHHHHHHTHHHHHTEEEEECC-----SSCCCH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-----CCHHHHHHHHHHHHhccHhhcC-----CCCCCH
Confidence            3456666666665543 11122222     567777777776     2332223323345567777777     665332


Q ss_pred             cccccc-----cccCCCceEecccccccc-----cchhhhcCCCccEEecCCCCCcCc-----CcccccccCCCceeecC
Q 043587          169 EIPRNI-----EKLVHLRYLSLSFQHIEK-----LPETLCELYNLETLDISGCFDLEE-----LPKGIGKLVNMKHLLNS  233 (285)
Q Consensus       169 ~~p~~i-----~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~-----lp~~l~~l~~L~~L~l~  233 (285)
                      .-...+     ...+.|++|++++|.++.     ++..+...++|++|++++|. ++.     ++..+...++|++|+++
T Consensus       141 ~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls  219 (372)
T 3un9_A          141 EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVA  219 (372)
T ss_dssp             HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred             HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECC
Confidence            222222     124567777777776552     34445566667777777776 332     23445556667777777


Q ss_pred             CCCCCcc----cCCCCCCCCcCCcccccc
Q 043587          234 RTSSVRY----MPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       234 ~~~~~~~----~p~~~~~l~~L~~L~l~~  258 (285)
                      +|.+...    ++..+...++|++|++++
T Consensus       220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~  248 (372)
T 3un9_A          220 YNGAGDTAALALARAAREHPSLELLHLYF  248 (372)
T ss_dssp             SSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence            7765431    223344556677777665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.01  E-value=1e-09  Score=94.30  Aligned_cols=103  Identities=17%  Similarity=0.088  Sum_probs=75.2

Q ss_pred             EEeecCC-CCCCCCchhhHHHHHHhcCCccceeeeccccccc-ccCCCcccccccccCCCceEecccccccccch-hhhc
Q 043587          123 SLLIDGG-RSDHSSLNGEILEELFRELTSLRALDFCESYHSR-SSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCE  199 (285)
Q Consensus       123 ~L~l~~~-~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~  199 (285)
                      .++.+++ .      ...+ |. +..+++|+.|+|+     + |.+.+..+..|+.+.+|++|+|++|.++.+|+ .+++
T Consensus        12 ~v~~~~~n~------l~~i-p~-l~~~~~L~~L~l~-----~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~   78 (347)
T 2ifg_A           12 GLRCTRDGA------LDSL-HH-LPGAENLTELYIE-----NQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF   78 (347)
T ss_dssp             CEECCSSCC------CTTT-TT-SCSCSCCSEEECC-----SCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS
T ss_pred             EEEcCCCCC------CCcc-CC-CCCCCCeeEEEcc-----CCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcC
Confidence            4566665 5      4444 44 7888889999998     6 66444344678888999999999998887765 5688


Q ss_pred             CCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCc
Q 043587          200 LYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVR  239 (285)
Q Consensus       200 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~  239 (285)
                      +++|+.|+|++|+ +..+|..+.....|++|++.+|++..
T Consensus        79 l~~L~~L~l~~N~-l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           79 TPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CcCCCEEeCCCCc-cceeCHHHcccCCceEEEeeCCCccC
Confidence            8999999999887 66776654443348999998887653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.97  E-value=5.9e-11  Score=103.10  Aligned_cols=152  Identities=16%  Similarity=0.192  Sum_probs=108.4

Q ss_pred             cccccEEeecCCCCCCCCchhhHHHHHHhc-----CCccceeeecccccccccCCCcccccc-cccCCCceEeccccccc
Q 043587          118 IKRMRSLLIDGGRSDHSSLNGEILEELFRE-----LTSLRALDFCESYHSRSSLTPEIPRNI-EKLVHLRYLSLSFQHIE  191 (285)
Q Consensus       118 l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~-----~~~L~~L~L~~~~~~~~~~~~~~p~~i-~~l~~L~~L~l~~~~l~  191 (285)
                      ++.|++|++++|.     +... ....+..     .++|+.|+|+     +|.+...-...+ ..+.+|++|++++|.++
T Consensus        71 ~~~L~~L~Ls~n~-----l~~~-~~~~l~~~L~~~~~~L~~L~Ls-----~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~  139 (372)
T 3un9_A           71 LSSLRQLNLAGVR-----MTPV-KCTVVAAVLGSGRHALDEVNLA-----SCQLDPAGLRTLLPVFLRARKLGLQLNSLG  139 (372)
T ss_dssp             HTTCCEEECTTSC-----CCHH-HHHHHHHHHSSCSSCEEEEECT-----TCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred             HhhCCEEEecCCC-----CCHH-HHHHHHHHHhhCCCCceEEEec-----CCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence            4689999999998     2332 2333333     2799999999     888443322233 34678999999999987


Q ss_pred             cc-----chhh-hcCCCccEEecCCCCCcCc-----CcccccccCCCceeecCCCCCCc----ccCCCCCCCCcCCcccc
Q 043587          192 KL-----PETL-CELYNLETLDISGCFDLEE-----LPKGIGKLVNMKHLLNSRTSSVR----YMPVGIGRLTGLRTLGE  256 (285)
Q Consensus       192 ~l-----p~~i-~~l~~L~~L~l~~~~~~~~-----lp~~l~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l  256 (285)
                      ..     ...+ ...++|++|++++|. ++.     ++..+...++|++|++++|.+..    .++..+...++|++|++
T Consensus       140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L  218 (372)
T 3un9_A          140 PEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV  218 (372)
T ss_dssp             HHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred             HHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence            33     2222 246889999999998 433     45556788999999999998754    23456777889999999


Q ss_pred             cc---c----cCCccccccCCcCCCceecccC
Q 043587          257 FT---K----ACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       257 ~~---~----~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      ++   .    ......+...+.|+.|+++++.
T Consensus       219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          219 AYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             CSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            98   1    1234456677899999998874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.96  E-value=1.1e-10  Score=107.21  Aligned_cols=62  Identities=15%  Similarity=0.026  Sum_probs=33.7

Q ss_pred             CcccccccCCCceeecCCCCCCcc-cCCCCCCCCcCCcccccc--c-cCCccccccCCcCCCceec
Q 043587          217 LPKGIGKLVNMKHLLNSRTSSVRY-MPVGIGRLTGLRTLGEFT--K-ACRLESLKNLEHLQICGIR  278 (285)
Q Consensus       217 lp~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~--~-~~~~~~l~~l~~L~~L~i~  278 (285)
                      +|..+..+++|++|++++|.+... ++..+..+++|++|++.+  . .........+++|+.|++.
T Consensus       281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence            444444667778888877764432 222245667777777765  1 1111112346666666663

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.95  E-value=4.5e-10  Score=96.48  Aligned_cols=102  Identities=22%  Similarity=0.165  Sum_probs=85.0

Q ss_pred             EEEEEec-CCcccccchhccccccEEeecC-CCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccccc
Q 043587          100 HLMLIIG-EGAIFPVSTRRIKRMRSLLIDG-GRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKL  177 (285)
Q Consensus       100 ~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l  177 (285)
                      .+.+... .+..+|. +..+++|+.|++++ |.      ...+++..|.++++|++|+|+     +|++.+..|..|..+
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~------l~~~~~~~~~~l~~L~~L~l~-----~N~l~~~~~~~~~~l   79 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQH------LQHLELRDLRGLGELRNLTIV-----KSGLRFVAPDAFHFT   79 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS------CCEECGGGSCSCCCCSEEECC-----SSCCCEECTTGGGSC
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC------CCCcChhHhccccCCCEEECC-----CCccceeCHHHhcCC
Confidence            3455665 6666788 89999999999996 87      555566779999999999999     898666667788999


Q ss_pred             CCCceEecccccccccchhhhcCCCccEEecCCCCC
Q 043587          178 VHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFD  213 (285)
Q Consensus       178 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~  213 (285)
                      ++|++|+|++|.++.+|+.+.....|+.|++.+|..
T Consensus        80 ~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           80 PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             SCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCc
Confidence            999999999999999987666555599999999983

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.95  E-value=1.2e-09  Score=93.31  Aligned_cols=96  Identities=14%  Similarity=0.047  Sum_probs=52.2

Q ss_pred             cCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCc-ccccccCCCc-eeecCCCCCCcccCCCCCCCCcCCc
Q 043587          177 LVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELP-KGIGKLVNMK-HLLNSRTSSVRYMPVGIGRLTGLRT  253 (285)
Q Consensus       177 l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~-~L~l~~~~~~~~~p~~~~~l~~L~~  253 (285)
                      +.+|+++++++|+++.+|+ .+.++.+|+.+++.++  +..++ ..|.++++|+ .+++.. .+...-+..|..|++|++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            4556666666666666654 3455666666666664  33333 3456666666 666655 243333455666666666


Q ss_pred             ccccc---ccCCccccccCCcCCCc
Q 043587          254 LGEFT---KACRLESLKNLEHLQIC  275 (285)
Q Consensus       254 L~l~~---~~~~~~~l~~l~~L~~L  275 (285)
                      +++..   ..-....+.++++|+.+
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EEeCCCccCccchhhhcCCcchhhh
Confidence            66643   22223345555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.89  E-value=8.4e-10  Score=94.20  Aligned_cols=77  Identities=16%  Similarity=0.082  Sum_probs=60.8

Q ss_pred             CCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCCcCC-cccccc--ccCCccccccCCcCCCc
Q 043587          200 LYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLR-TLGEFT--KACRLESLKNLEHLQIC  275 (285)
Q Consensus       200 l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~-~L~l~~--~~~~~~~l~~l~~L~~L  275 (285)
                      +++|+.+++.+|. +..+|. .|..+.+|+.+++..| +...-+..|..+.+|+ ++.+..  ..-....+.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEE
Confidence            6889999999987 666665 5889999999999887 5544456789999999 998876  33344668888889888


Q ss_pred             eec
Q 043587          276 GIR  278 (285)
Q Consensus       276 ~i~  278 (285)
                      ++.
T Consensus       303 ~l~  305 (329)
T 3sb4_A          303 LAT  305 (329)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=1.3e-08  Score=87.93  Aligned_cols=177  Identities=12%  Similarity=0.103  Sum_probs=109.3

Q ss_pred             CCceeEEEEEecCCc-c--------cccchhccccccEEeecCCCCCCCCc----hhhHHHHHHhcCCccceeeeccccc
Q 043587           95 DEKVRHLMLIIGEGA-I--------FPVSTRRIKRMRSLLIDGGRSDHSSL----NGEILEELFRELTSLRALDFCESYH  161 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~-~--------~~~~~~~l~~L~~L~l~~~~~~~~~l----~~~~~~~~~~~~~~L~~L~L~~~~~  161 (285)
                      +..++.|.+...... .        +..+...+++|+.|.+.........+    ... +...+..+++|+.|.+.    
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~-L~~ll~~~P~L~~L~L~----  180 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVD-LSPVLDAMPLLNNLKIK----  180 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCB-CHHHHHTCTTCCEEEEE----
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccC-HHHHHhcCCCCcEEEEe----
Confidence            345666666644432 1        23345678899999986653211111    112 34557889999999998    


Q ss_pred             ccccCCCcccccccccCCCceEecccccccc-cchhhh--cCCCccEEecCCC--CC-----cCcCcccc--cccCCCce
Q 043587          162 SRSSLTPEIPRNIEKLVHLRYLSLSFQHIEK-LPETLC--ELYNLETLDISGC--FD-----LEELPKGI--GKLVNMKH  229 (285)
Q Consensus       162 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~-lp~~i~--~l~~L~~L~l~~~--~~-----~~~lp~~l--~~l~~L~~  229 (285)
                       ++. .-.++. + .+++|+.|++..+.+.. ....+.  .+++|+.|+|+.+  ..     ...+...+  ..+|+|++
T Consensus       181 -g~~-~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~  256 (362)
T 2ra8_A          181 -GTN-NLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW  256 (362)
T ss_dssp             -CCB-TCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCE
T ss_pred             -CCC-Cceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCE
Confidence             653 223443 3 37899999999888652 123343  7899999998632  11     11121222  35789999


Q ss_pred             eecCCCCCCcccCCC---CCCCCcCCcccccc---cc----CCccccccCCcCCCceeccc
Q 043587          230 LLNSRTSSVRYMPVG---IGRLTGLRTLGEFT---KA----CRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       230 L~l~~~~~~~~~p~~---~~~l~~L~~L~l~~---~~----~~~~~l~~l~~L~~L~i~~~  280 (285)
                      |++.+|.+....+..   ...+++|++|+++.   ..    .....+..+++|+.|+++.+
T Consensus       257 L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             EEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             EeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            999988765432222   24578999999987   11    23444567888999998876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.50  E-value=1.5e-07  Score=77.42  Aligned_cols=80  Identities=18%  Similarity=0.211  Sum_probs=41.6

Q ss_pred             hcCCccceeeecccccccccCCC--cccccccccCCCceEecccccccccchhhhcCC--CccEEecCCCCCcCcCc---
Q 043587          146 RELTSLRALDFCESYHSRSSLTP--EIPRNIEKLVHLRYLSLSFQHIEKLPETLCELY--NLETLDISGCFDLEELP---  218 (285)
Q Consensus       146 ~~~~~L~~L~L~~~~~~~~~~~~--~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~lp---  218 (285)
                      ..+++|+.|+|+     +|.+.+  .+|..+..+++|++|+|++|.++.+. .+..+.  +|++|++.+|...+.+|   
T Consensus       167 ~~l~~L~~L~Ls-----~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~  240 (267)
T 3rw6_A          167 ENIPELLSLNLS-----NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQS  240 (267)
T ss_dssp             HHCTTCCEEECT-----TSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred             hhCCCCCEEECC-----CCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcch
Confidence            455666666666     555333  23344455666666666666655442 233333  56666666665333333   


Q ss_pred             ----ccccccCCCceee
Q 043587          219 ----KGIGKLVNMKHLL  231 (285)
Q Consensus       219 ----~~l~~l~~L~~L~  231 (285)
                          ..+..+|+|+.||
T Consensus       241 ~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          241 TYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHCTTCCEES
T ss_pred             hHHHHHHHHCcccCeEC
Confidence                1234555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=2.5e-07  Score=72.04  Aligned_cols=115  Identities=12%  Similarity=0.068  Sum_probs=78.0

Q ss_pred             ccchhccccccEEeecCC-CCCCCCchhh---HHHHHHhcCCccceeeecccccccccCCCc----ccccccccCCCceE
Q 043587          112 PVSTRRIKRMRSLLIDGG-RSDHSSLNGE---ILEELFRELTSLRALDFCESYHSRSSLTPE----IPRNIEKLVHLRYL  183 (285)
Q Consensus       112 ~~~~~~l~~L~~L~l~~~-~~~~~~l~~~---~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~----~p~~i~~l~~L~~L  183 (285)
                      ...+...+.|++|++++| .     +...   .....+...++|++|+|+     +|.+...    +...+...+.|++|
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~-----i~~~g~~~l~~~L~~~~~L~~L~Ls-----~n~i~~~g~~~l~~~L~~n~~L~~L   98 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMN-----IPVPTLKACAEALKTNTYVKKFSIV-----GTRSNDPVAFALAEMLKVNNTLKSL   98 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTT-----CCHHHHHHHHHHHTTCCSCCEEECT-----TSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             HHHHhcCCCCCEEEecCCCC-----CCHHHHHHHHHHHHhCCCcCEEECc-----CCCCChHHHHHHHHHHHhCCCcCEE
Confidence            445566788899999888 6     2221   124445667889999998     7773322    34445556788899


Q ss_pred             ecccccccc-----cchhhhcCCCccEEec--CCCCCcCc-----CcccccccCCCceeecCCCCC
Q 043587          184 SLSFQHIEK-----LPETLCELYNLETLDI--SGCFDLEE-----LPKGIGKLVNMKHLLNSRTSS  237 (285)
Q Consensus       184 ~l~~~~l~~-----lp~~i~~l~~L~~L~l--~~~~~~~~-----lp~~l~~l~~L~~L~l~~~~~  237 (285)
                      +|++|.++.     +...+...++|++|++  ++|. ++.     +...+...++|++|++++|.+
T Consensus        99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            999888763     4556677788899999  7776 433     334455667888888888854

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.39  E-value=5.4e-07  Score=78.86  Aligned_cols=17  Identities=0%  Similarity=-0.230  Sum_probs=9.6

Q ss_pred             cchhccccccEEeecCC
Q 043587          113 VSTRRIKRMRSLLIDGG  129 (285)
Q Consensus       113 ~~~~~l~~L~~L~l~~~  129 (285)
                      .+|.++.+|+.+.+..+
T Consensus       174 ~aF~~c~~L~~l~l~~n  190 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKT  190 (401)
T ss_dssp             STTTTCTTCCEEECTTS
T ss_pred             HHhhCcccCCeeecCCC
Confidence            45555566666665544

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=98.36  E-value=1.5e-07  Score=85.95  Aligned_cols=74  Identities=16%  Similarity=0.304  Sum_probs=57.7

Q ss_pred             CCceeccccCCchhhhcccc----------------ccC-------------C-------CCCHHHHHHHHHHHHhhCCC
Q 043587            1 MSSLLLSYNDLPSKLKRCYL----------------SAE-------------E-------DEEMETIGEEYFGILAPRSF   44 (285)
Q Consensus         1 ~~~L~lSy~~L~~~lk~cf~----------------~~~-------------~-------~~~~~~~~~~~~~~Li~~~l   44 (285)
                      .++|++||++||.++|.||.                +..             +       ..+.+++++ |+++|++++|
T Consensus       364 ~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsL  442 (549)
T 2a5y_B          364 ECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGA  442 (549)
T ss_dssp             CCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSS
T ss_pred             HHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCC
Confidence            36899999999999999982                110             0       233567777 9999999999


Q ss_pred             CccccccCCCceeeEecChHHHHHHHHhhcccee
Q 043587           45 FQEFEKSYDNRIIKCKMHDMVHDFAQFVSENECL   78 (285)
Q Consensus        45 i~~~~~~~~~~~~~~~~hd~~~~~~~~~~~~~~~   78 (285)
                      ++....+   ....|+|||+++++++.++.+++.
T Consensus       443 l~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          443 LLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             CSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             eeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence            9987653   345799999999999988876654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.35  E-value=2e-07  Score=72.59  Aligned_cols=114  Identities=13%  Similarity=0.137  Sum_probs=84.1

Q ss_pred             hHHHHHHhcCCccceeeecccccccc-cCCCc----ccccccccCCCceEeccccccc-----ccchhhhcCCCccEEec
Q 043587          139 EILEELFRELTSLRALDFCESYHSRS-SLTPE----IPRNIEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDI  208 (285)
Q Consensus       139 ~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~----~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l  208 (285)
                      +.....+...+.|+.|+|+     +| .+...    +...+...++|++|+|++|.+.     .+...+...++|++|++
T Consensus        26 ~~l~~~l~~~~~L~~L~L~-----~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L  100 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLN-----NIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV  100 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECT-----TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHHhcCCCCCEEEec-----CCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC
Confidence            3356668889999999999     77 63322    4455666789999999999976     34556667789999999


Q ss_pred             CCCCCcCc-----CcccccccCCCceeec--CCCCCCcc----cCCCCCCCCcCCcccccc
Q 043587          209 SGCFDLEE-----LPKGIGKLVNMKHLLN--SRTSSVRY----MPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       209 ~~~~~~~~-----lp~~l~~l~~L~~L~l--~~~~~~~~----~p~~~~~l~~L~~L~l~~  258 (285)
                      ++|. ++.     +...+...++|++|++  ++|.+...    +...+...++|++|++++
T Consensus       101 ~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~  160 (185)
T 1io0_A          101 ESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  160 (185)
T ss_dssp             CSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             cCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence            9998 544     4556777889999999  77866542    233455567788888776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.32  E-value=1.3e-07  Score=77.80  Aligned_cols=82  Identities=22%  Similarity=0.218  Sum_probs=63.5

Q ss_pred             cccCCCceEecccccccccc---hhhhcCCCccEEecCCCCCcCcCcccccccC--CCceeecCCCCCCcccCC------
Q 043587          175 EKLVHLRYLSLSFQHIEKLP---ETLCELYNLETLDISGCFDLEELPKGIGKLV--NMKHLLNSRTSSVRYMPV------  243 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp---~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~--~L~~L~l~~~~~~~~~p~------  243 (285)
                      ..+++|++|+|++|.++.++   ..+..+++|+.|+|++|. +..+ ..+..+.  +|++|++++|++.+..|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            46889999999999987654   566789999999999998 5555 3455565  899999999998876653      


Q ss_pred             -CCCCCCcCCcccccc
Q 043587          244 -GIGRLTGLRTLGEFT  258 (285)
Q Consensus       244 -~~~~l~~L~~L~l~~  258 (285)
                       .+..+++|+.|+...
T Consensus       245 ~il~~~P~L~~LDg~~  260 (267)
T 3rw6_A          245 AIRERFPKLLRLDGHE  260 (267)
T ss_dssp             HHHHHCTTCCEESSCB
T ss_pred             HHHHHCcccCeECCcC
Confidence             256777888777543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.32  E-value=8.6e-08  Score=73.56  Aligned_cols=81  Identities=12%  Similarity=0.130  Sum_probs=48.0

Q ss_pred             CCCceEeccccccccc-chhhhcCCCccEEecCCCCCcCcC-ccccccc----CCCceeecCCCCCC-cccCCCCCCCCc
Q 043587          178 VHLRYLSLSFQHIEKL-PETLCELYNLETLDISGCFDLEEL-PKGIGKL----VNMKHLLNSRTSSV-RYMPVGIGRLTG  250 (285)
Q Consensus       178 ~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~l-p~~l~~l----~~L~~L~l~~~~~~-~~~p~~~~~l~~  250 (285)
                      ..|+.|++++|.++.. -..+.++++|+.|++++|..++.. -..+..+    ++|++|++++|... ..--..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            4688888888886622 245677888888888888755542 1234433    36888888888532 211122334444


Q ss_pred             CCcccccc
Q 043587          251 LRTLGEFT  258 (285)
Q Consensus       251 L~~L~l~~  258 (285)
                      |+.|++++
T Consensus       141 L~~L~L~~  148 (176)
T 3e4g_A          141 LKYLFLSD  148 (176)
T ss_dssp             CCEEEEES
T ss_pred             CCEEECCC
Confidence            44444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.29  E-value=2.5e-06  Score=73.49  Aligned_cols=14  Identities=21%  Similarity=0.351  Sum_probs=6.9

Q ss_pred             hccccccEEeecCC
Q 043587          116 RRIKRMRSLLIDGG  129 (285)
Q Consensus       116 ~~l~~L~~L~l~~~  129 (285)
                      ..+++|+.|.+.++
T Consensus       169 ~~~P~L~~L~L~g~  182 (362)
T 2ra8_A          169 DAMPLLNNLKIKGT  182 (362)
T ss_dssp             HTCTTCCEEEEECC
T ss_pred             hcCCCCcEEEEeCC
Confidence            34455555555444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.29  E-value=1.3e-06  Score=76.46  Aligned_cols=36  Identities=11%  Similarity=0.197  Sum_probs=18.7

Q ss_pred             chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeec
Q 043587          114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFC  157 (285)
Q Consensus       114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~  157 (285)
                      +|.++ +|+.+.+..+       ...+...+|.++++|+.+++.
T Consensus       153 aF~~~-~L~~i~lp~~-------l~~I~~~aF~~c~~L~~l~l~  188 (401)
T 4fdw_A          153 AFFNS-TVQEIVFPST-------LEQLKEDIFYYCYNLKKADLS  188 (401)
T ss_dssp             TTTTC-CCCEEECCTT-------CCEECSSTTTTCTTCCEEECT
T ss_pred             hcCCC-CceEEEeCCC-------ccEehHHHhhCcccCCeeecC
Confidence            44442 4666666542       223334446666666666665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.13  E-value=2e-06  Score=65.87  Aligned_cols=34  Identities=18%  Similarity=0.283  Sum_probs=14.5

Q ss_pred             CccEEecCCCCCcCcC-cccccccCCCceeecCCC
Q 043587          202 NLETLDISGCFDLEEL-PKGIGKLVNMKHLLNSRT  235 (285)
Q Consensus       202 ~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~l~~~  235 (285)
                      +|+.|++++|..++.- -..+..+++|++|++++|
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            3455555554433221 122334445555555544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.13  E-value=0.00021  Score=70.96  Aligned_cols=72  Identities=15%  Similarity=0.205  Sum_probs=55.0

Q ss_pred             CceeccccCCchhhhccc-----cccCCC----------CCHHHHHHHHHHHHhhCCCCccccccCCCceeeEecChHHH
Q 043587            2 SSLLLSYNDLPSKLKRCY-----LSAEED----------EEMETIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVH   66 (285)
Q Consensus         2 ~~L~lSy~~L~~~lk~cf-----~~~~~~----------~~~~~~~~~~~~~Li~~~li~~~~~~~~~~~~~~~~hd~~~   66 (285)
                      .+|++||+.||++.|.||     ++....          ...++.++.++++|++++|++...   +++...|+||++++
T Consensus       366 ~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~  442 (1249)
T 3sfz_A          366 EAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQV  442 (1249)
T ss_dssp             HHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEec---CCCceEEEecHHHH
Confidence            368899999999999999     222111          112467889999999999998654   34445799999999


Q ss_pred             HHHHHhhccc
Q 043587           67 DFAQFVSENE   76 (285)
Q Consensus        67 ~~~~~~~~~~   76 (285)
                      ++++..+.++
T Consensus       443 ~~~~~~~~~~  452 (1249)
T 3sfz_A          443 DFLTEKNRSQ  452 (1249)
T ss_dssp             HHHHHHTGGG
T ss_pred             HHHHhhhhHH
Confidence            9999887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.11  E-value=0.001  Score=57.76  Aligned_cols=141  Identities=11%  Similarity=0.088  Sum_probs=79.1

Q ss_pred             chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccccc
Q 043587          114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL  193 (285)
Q Consensus       114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l  193 (285)
                      .+.++..++.+.+..+.       ..+....|..+..++.+...     ... ++  ...+..+.+|+.+.+..+ ++.+
T Consensus       248 ~f~~~~~l~~~~~~~~~-------~~i~~~~F~~~~~l~~~~~~-----~~~-i~--~~~F~~~~~L~~i~l~~~-i~~I  311 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNK-------LRIGGSLFYNCSGLKKVIYG-----SVI-VP--EKTFYGCSSLTEVKLLDS-VKFI  311 (394)
T ss_dssp             TTTTCSSCCEEEECCTT-------CEECSCTTTTCTTCCEEEEC-----SSE-EC--TTTTTTCTTCCEEEECTT-CCEE
T ss_pred             cccccccceeEEcCCCc-------ceeeccccccccccceeccC-----cee-ec--cccccccccccccccccc-ccee
Confidence            44455555555554442       11123334555555555544     222 11  134556777777777543 5555


Q ss_pred             ch-hhhcCCCccEEecCCCCCcCcC-cccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc-ccCCccccccCC
Q 043587          194 PE-TLCELYNLETLDISGCFDLEEL-PKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-KACRLESLKNLE  270 (285)
Q Consensus       194 p~-~i~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~  270 (285)
                      ++ ++.++.+|+.+++..+  ++.+ ...|.++.+|+.+.+..+ +...-...|..|.+|+++.+.. .......+.+++
T Consensus       312 ~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~  388 (394)
T 4fs7_A          312 GEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLEQYRYDFEDTT  388 (394)
T ss_dssp             CTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTC
T ss_pred             chhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCEEhhheecCCC
Confidence            43 5667788888888653  4444 346777888888888655 4433345688888888887765 111223355555


Q ss_pred             cCC
Q 043587          271 HLQ  273 (285)
Q Consensus       271 ~L~  273 (285)
                      +|+
T Consensus       389 ~L~  391 (394)
T 4fs7_A          389 KFK  391 (394)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.90  E-value=0.0025  Score=54.82  Aligned_cols=129  Identities=12%  Similarity=0.135  Sum_probs=68.5

Q ss_pred             ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc-cccccccCCCceEecccccc
Q 043587          112 PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI-PRNIEKLVHLRYLSLSFQHI  190 (285)
Q Consensus       112 ~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-p~~i~~l~~L~~L~l~~~~l  190 (285)
                      ...+..+.+|+.+.+..+-       ..+...+|.++..|+.+.+.     .+  ...+ ...+..+..|+.+.+.. .+
T Consensus       210 ~~~f~~~~~l~~i~~~~~~-------~~i~~~~f~~~~~L~~i~lp-----~~--v~~I~~~aF~~~~~l~~i~l~~-~i  274 (379)
T 4h09_A          210 AYGFSYGKNLKKITITSGV-------TTLGDGAFYGMKALDEIAIP-----KN--VTSIGSFLLQNCTALKTLNFYA-KV  274 (379)
T ss_dssp             TTTTTTCSSCSEEECCTTC-------CEECTTTTTTCSSCCEEEEC-----TT--CCEECTTTTTTCTTCCEEEECC-CC
T ss_pred             ecccccccccceeeeccce-------eEEccccccCCccceEEEcC-----CC--ccEeCccccceeehhccccccc-cc
Confidence            3455556666666664442       12233445666667777665     32  1222 23455566666666643 24


Q ss_pred             cccch-hhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCcccCCCCCCCCcCCccccc
Q 043587          191 EKLPE-TLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEF  257 (285)
Q Consensus       191 ~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  257 (285)
                      +.++. .+.++.+|+.+.+.++. ++.++ ..|.++.+|+.+.+..+ +...-..+|.+|.+|+++.+.
T Consensus       275 ~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          275 KTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             SEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             eeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            44443 34566667777666554 44332 34566666777766543 322223456666667666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.77  E-value=0.0028  Score=54.98  Aligned_cols=60  Identities=12%  Similarity=0.019  Sum_probs=37.0

Q ss_pred             hhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc
Q 043587          196 TLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       196 ~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  258 (285)
                      .+.++.+|+.+.+.++  ...++ ..+..+.+|+.+.+..+ +...-...+..+..|+.+.+..
T Consensus       157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~  217 (394)
T 4fs7_A          157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN  217 (394)
T ss_dssp             TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred             hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence            4556677777777654  23333 34667777887777655 3323335577777777776654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.61  E-value=0.0034  Score=54.41  Aligned_cols=126  Identities=13%  Similarity=0.161  Sum_probs=72.7

Q ss_pred             HHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcC-cc
Q 043587          142 EELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEEL-PK  219 (285)
Q Consensus       142 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~l-p~  219 (285)
                      ..+|.++..|+.+.+.     .+. ...-...+..+..|+.+.+. +.++.++. .+.++.+|+.+.+..+  ++.+ ..
T Consensus       258 ~~aF~~c~~L~~i~lp-----~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~  328 (394)
T 4gt6_A          258 THAFDSCAYLASVKMP-----DSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDD  328 (394)
T ss_dssp             TTTTTTCSSCCEEECC-----TTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTT
T ss_pred             cceeeecccccEEecc-----ccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHh
Confidence            3446667777777775     322 22223456667778887774 44566654 4556788888888653  4443 34


Q ss_pred             cccccCCCceeecCCCCCCcccCCCCCCCCcCCccccccccCCccccccCCcCCCcee
Q 043587          220 GIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFTKACRLESLKNLEHLQICGI  277 (285)
Q Consensus       220 ~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~l~~l~~L~~L~i  277 (285)
                      .|.++.+|+.+.+..+ +...-...|.+|.+|+.+.+.+.......+.....|+.+.+
T Consensus       329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPV  385 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-----
T ss_pred             HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEe
Confidence            5777888888888544 33222356788888888877662222233444555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.48  E-value=0.0079  Score=51.66  Aligned_cols=106  Identities=13%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc-cccccccCCCceEeccccccc
Q 043587          113 VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI-PRNIEKLVHLRYLSLSFQHIE  191 (285)
Q Consensus       113 ~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-p~~i~~l~~L~~L~l~~~~l~  191 (285)
                      ..+.++..|+.+.+..+       ...+...+|.++.+|+.+.+.     .+  ...+ ...+..+.+|+.+.+.++.++
T Consensus       234 ~~f~~~~~L~~i~lp~~-------v~~I~~~aF~~~~~l~~i~l~-----~~--i~~i~~~aF~~c~~L~~i~l~~~~i~  299 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-------VTSIGSFLLQNCTALKTLNFY-----AK--VKTVPYLLCSGCSNLTKVVMDNSAIE  299 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-------CCEECTTTTTTCTTCCEEEEC-----CC--CSEECTTTTTTCTTCCEEEECCTTCC
T ss_pred             ccccCCccceEEEcCCC-------ccEeCccccceeehhcccccc-----cc--ceeccccccccccccccccccccccc
Confidence            34555666666666544       122233445666666666664     22  2222 234555666666666666666


Q ss_pred             ccch-hhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCC
Q 043587          192 KLPE-TLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSR  234 (285)
Q Consensus       192 ~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~  234 (285)
                      .+++ .+.++.+|+.+.+..+  ++.++ ..|.++.+|+.+.+..
T Consensus       300 ~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          300 TLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred             eehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence            5543 4455666666666542  33332 3455666666666543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.33  E-value=0.0036  Score=54.26  Aligned_cols=126  Identities=13%  Similarity=0.188  Sum_probs=87.7

Q ss_pred             ccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc-cccccccCCCceEecccccc
Q 043587          112 PVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI-PRNIEKLVHLRYLSLSFQHI  190 (285)
Q Consensus       112 ~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-p~~i~~l~~L~~L~l~~~~l  190 (285)
                      ..+|.++..|+.+.+..+.       ..+...+|.++..|+.+.+.     . . ...+ ...|..+.+|+.+.+..+ +
T Consensus       258 ~~aF~~c~~L~~i~lp~~~-------~~I~~~aF~~c~~L~~i~l~-----~-~-i~~I~~~aF~~c~~L~~i~lp~~-v  322 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSV-------VSIGTGAFMNCPALQDIEFS-----S-R-ITELPESVFAGCISLKSIDIPEG-I  322 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTC-------CEECTTTTTTCTTCCEEECC-----T-T-CCEECTTTTTTCTTCCEEECCTT-C
T ss_pred             cceeeecccccEEeccccc-------ceecCcccccccccccccCC-----C-c-ccccCceeecCCCCcCEEEeCCc-c
Confidence            3467888999999887653       23345668889999999986     2 3 3344 356778999999999754 6


Q ss_pred             cccch-hhhcCCCccEEecCCCCCcCcC-cccccccCCCceeecCCCCCCcccCCCCCCCCcCCccccc
Q 043587          191 EKLPE-TLCELYNLETLDISGCFDLEEL-PKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEF  257 (285)
Q Consensus       191 ~~lp~-~i~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  257 (285)
                      +.+.+ ++.++.+|+.+.+..+  +..+ ...|.++.+|+.+++.++....   ..+..+.+|+.+.+.
T Consensus       323 ~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          323 TQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVA  386 (394)
T ss_dssp             CEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC------
T ss_pred             cEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeC
Confidence            66654 6778999999999754  4455 4578899999999998774321   356677788877654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.21  E-value=0.008  Score=43.42  Aligned_cols=42  Identities=24%  Similarity=0.252  Sum_probs=28.1

Q ss_pred             cccccccccCCCceEecccccccccchh-hhcCCCccEEecCCCC
Q 043587          169 EIPRNIEKLVHLRYLSLSFQHIEKLPET-LCELYNLETLDISGCF  212 (285)
Q Consensus       169 ~~p~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~  212 (285)
                      .+|..+  ..+|++|+|++|.++.+|.. +..+++|++|+|.+|.
T Consensus        24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            555443  23577777777777777653 4567777777777776

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=96.15  E-value=0.0016  Score=62.93  Aligned_cols=63  Identities=8%  Similarity=0.042  Sum_probs=46.3

Q ss_pred             CceeccccCCchhh-hccc-----cccCCCCCH-----------HHHHHHHHHHHhhCCCCccccccCCCceeeEecChH
Q 043587            2 SSLLLSYNDLPSKL-KRCY-----LSAEEDEEM-----------ETIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDM   64 (285)
Q Consensus         2 ~~L~lSy~~L~~~l-k~cf-----~~~~~~~~~-----------~~~~~~~~~~Li~~~li~~~~~~~~~~~~~~~~hd~   64 (285)
                      ++|++||+.||++. |.||     ++.......           ++.++.++++|++++|++...     ....|+|||+
T Consensus       357 aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDL  431 (1221)
T 1vt4_I          357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP-----KESTISIPSI  431 (1221)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHH
Confidence            46899999999999 9999     221111111           235889999999999999732     2247899999


Q ss_pred             HHHHH
Q 043587           65 VHDFA   69 (285)
Q Consensus        65 ~~~~~   69 (285)
                      +++++
T Consensus       432 llELr  436 (1221)
T 1vt4_I          432 YLELK  436 (1221)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98865

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.07  E-value=0.009  Score=46.43  Aligned_cols=113  Identities=12%  Similarity=0.089  Sum_probs=66.5

Q ss_pred             hccccccEEeecCC-CCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCc----ccccccccCCCceEecccccc
Q 043587          116 RRIKRMRSLLIDGG-RSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPE----IPRNIEKLVHLRYLSLSFQHI  190 (285)
Q Consensus       116 ~~l~~L~~L~l~~~-~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~----~p~~i~~l~~L~~L~l~~~~l  190 (285)
                      .+-+.|+.|+++++ .....  -...+...+..-+.|+.|+|+     +|++...    +...+..=..|++|+|++|.|
T Consensus        38 ~~n~~L~~L~L~~nn~igd~--ga~~la~aL~~N~~L~~L~L~-----~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKE--RIRSLIEAACNSKHIEKFSLA-----NTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHH--HHHHHHHHHTTCSCCCEEECT-----TSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             hcCCCccEEECCCCCCCCHH--HHHHHHHHHhhCCCcCEEEcc-----CCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            34467888888775 41000  001134446667788888888     7763322    333444456788888888887


Q ss_pred             c-----ccchhhhcCCCccEEecCCCCC--cCc-----CcccccccCCCceeecCCC
Q 043587          191 E-----KLPETLCELYNLETLDISGCFD--LEE-----LPKGIGKLVNMKHLLNSRT  235 (285)
Q Consensus       191 ~-----~lp~~i~~l~~L~~L~l~~~~~--~~~-----lp~~l~~l~~L~~L~l~~~  235 (285)
                      .     .+-+.+..-+.|+.|+++++..  ++.     +...+..=++|+.|+++.+
T Consensus       111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            6     3334455556788888876531  221     2233444567888887655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.65  E-value=0.021  Score=41.16  Aligned_cols=53  Identities=17%  Similarity=0.259  Sum_probs=33.9

Q ss_pred             eEeccccccc--ccchhhhcCCCccEEecCCCCCcCcCccc-ccccCCCceeecCCCCC
Q 043587          182 YLSLSFQHIE--KLPETLCELYNLETLDISGCFDLEELPKG-IGKLVNMKHLLNSRTSS  237 (285)
Q Consensus       182 ~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~  237 (285)
                      .++-+++.++  .+|..+.  .+|+.|+|++|. +..+|.. +..+++|+.|++.+|+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence            5566666666  6665432  457777777776 5556543 46677777777777654

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=95.63  E-value=0.0059  Score=55.85  Aligned_cols=68  Identities=16%  Similarity=0.203  Sum_probs=49.9

Q ss_pred             ceeccccCCchhhhccc-----cccCCCCC----------HHHHHHHHHHHHhhCCCCccccccCCCceeeEecChHHHH
Q 043587            3 SLLLSYNDLPSKLKRCY-----LSAEEDEE----------METIGEEYFGILAPRSFFQEFEKSYDNRIIKCKMHDMVHD   67 (285)
Q Consensus         3 ~L~lSy~~L~~~lk~cf-----~~~~~~~~----------~~~~~~~~~~~Li~~~li~~~~~~~~~~~~~~~~hd~~~~   67 (285)
                      +|.+||+.||++.|.||     ++.....+          ..+.+..+++.|+++++++....   +....|+||+++++
T Consensus       367 ~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~  443 (591)
T 1z6t_A          367 AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVD  443 (591)
T ss_dssp             HHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHH
Confidence            57899999999999999     22111111          12356789999999999985432   33457999999999


Q ss_pred             HHHHhh
Q 043587           68 FAQFVS   73 (285)
Q Consensus        68 ~~~~~~   73 (285)
                      +++...
T Consensus       444 ~~~~~~  449 (591)
T 1z6t_A          444 FLTEKN  449 (591)
T ss_dssp             HHHHHT
T ss_pred             HHHhhh
Confidence            998763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.51  E-value=0.026  Score=43.80  Aligned_cols=88  Identities=16%  Similarity=0.177  Sum_probs=63.2

Q ss_pred             HHHHHhcCCccceeeecccccccc-cCCCc-----ccccccccCCCceEeccccccc-----ccchhhhcCCCccEEecC
Q 043587          141 LEELFRELTSLRALDFCESYHSRS-SLTPE-----IPRNIEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDIS  209 (285)
Q Consensus       141 ~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~-----~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~  209 (285)
                      +...+..-+.|+.|+|+     ++ + ++.     +...+..=..|+.|+|++|.+.     .+.+.+..-+.|+.|+|+
T Consensus        33 l~~ll~~n~~L~~L~L~-----~nn~-igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~  106 (197)
T 1pgv_A           33 INRLREDDTDLKEVNIN-----NMKR-VSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE  106 (197)
T ss_dssp             HHHHHTTCSSCCEEECT-----TCCS-SCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred             HHHHHhcCCCccEEECC-----CCCC-CCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence            45556778899999998     65 5 433     3345555678999999999977     344556666889999999


Q ss_pred             CCCCcCc-----CcccccccCCCceeecCCC
Q 043587          210 GCFDLEE-----LPKGIGKLVNMKHLLNSRT  235 (285)
Q Consensus       210 ~~~~~~~-----lp~~l~~l~~L~~L~l~~~  235 (285)
                      +|. ++.     +-..+..=+.|++|++++|
T Consensus       107 ~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          107 SNF-LTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SSB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCc-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            998 442     2233444467999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	285
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 15/89 (16%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLE 204
                SL  L+   S +    L    PR       L  L  SF H+ ++PE      NL+
Sbjct: 280 CDLPPSLEELNV--SNNKLIELPALPPR-------LERLIASFNHLAEVPELPQ---NLK 327

Query: 205 TLDISGCFDLEELPKGIGKLVNMKHLLNS 233
            L +     L E P     + +++  +NS
Sbjct: 328 QLHVEYN-PLREFPDIPESVEDLR--MNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 156 FCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLE 215
              + +  ++ + EI    +    L  L++S   + +LP        LE L  S    L 
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFN-HLA 317

Query: 216 ELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRL 248
           E+P+    L  + H+  +       +P  +  L
Sbjct: 318 EVPELPQNLKQL-HVEYNPLREFPDIPESVEDL 349

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.9 bits (94), Expect = 9e-05
 Identities = 9/63 (14%), Positives = 21/63 (33%)

Query: 156 FCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLE 215
                   + +   +P+ + +L  L  L++SF ++         L   +    +    L 
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

Query: 216 ELP 218
             P
Sbjct: 306 GSP 308

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 166 LTPEIPRNIEK---LVHLRYLSLSFQHIEKLPETLCELYNLETLDISGC 211
           LT E+     +    V  R L L    I  +      L   + +D S  
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN 51

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 162 SRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKG 220
           S   L  ++P+++        L L    I ++ +     L NL TL +      +  P  
Sbjct: 18  SDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74

Query: 221 IGKLVNMKHL 230
              LV ++ L
Sbjct: 75  FAPLVKLERL 84

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 8/94 (8%), Positives = 33/94 (35%), Gaps = 2/94 (2%)

Query: 162 SRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGC-FDLEELPKG 220
           +  +L P++   +     +         +++        + ++ +D+S    ++  L   
Sbjct: 8   TGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 66

Query: 221 IGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL 254
           + +   +++L          +   + + + L  L
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 162 SRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGI 221
             ++++   P  +  L  L+ L  +   +  +   L  L N+  L       + +L   +
Sbjct: 315 YFNNISDISP--VSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHN-QISDLT-PL 369

Query: 222 GKLVNMKHL 230
             L  +  L
Sbjct: 370 ANLTRITQL 378

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLE 204
              LT L+ L F     + + ++     ++  L ++ +LS     I  L   L  L  + 
Sbjct: 325 VSSLTKLQRLFF-----ANNKVS--DVSSLANLTNINWLSAGHNQISDLTP-LANLTRIT 376

Query: 205 TLDISG 210
            L ++ 
Sbjct: 377 QLGLND 382

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.71
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.68
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.67
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.66
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.45
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.44
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.42
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.08
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.03
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.76
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.67
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.58
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.31
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.27
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.04

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.2e-17  Score=133.66  Aligned_cols=173  Identities=19%  Similarity=0.147  Sum_probs=140.8

Q ss_pred             CCCCceeEEEEEecCCcccc-cchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFP-VSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+.+++.|.+..+.+..++ ..+.++++|++|++++|.      ...+ +. +..+++|++|+++     +|+ ....+
T Consensus        28 ~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~------l~~l-~~-~~~l~~L~~L~Ls-----~N~-l~~~~   93 (266)
T d1p9ag_          28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE------LTKL-QV-DGTLPVLGTLDLS-----HNQ-LQSLP   93 (266)
T ss_dssp             CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC------CCEE-EC-CSCCTTCCEEECC-----SSC-CSSCC
T ss_pred             CcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccc------cccc-cc-ccccccccccccc-----ccc-ccccc
Confidence            46678999999999988755 568899999999999998      4443 32 5789999999999     888 55567


Q ss_pred             ccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccCCCCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMPVGIGRLT  249 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~  249 (285)
                      ..+..++.|++|+++++.+..++. .+..+.++++|++++|. +..+|. .+..+++|+.+++++|++.+..+..++.++
T Consensus        94 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~  172 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE  172 (266)
T ss_dssp             CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred             cccccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccchhcccccccccccCcccccccc
Confidence            788889999999999999887654 55688899999999998 556554 457788999999999988866667789999


Q ss_pred             cCCcccccc--ccCCccccccCCcCCCceeccc
Q 043587          250 GLRTLGEFT--KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       250 ~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      +|++|++++  -...+..+..+++|+.|++.+.
T Consensus       173 ~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         173 NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             ccceeecccCCCcccChhHCCCCCCCEEEecCC
Confidence            999999988  3456677788888999888764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-16  Score=131.99  Aligned_cols=182  Identities=22%  Similarity=0.250  Sum_probs=145.4

Q ss_pred             CCCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCC-------------------CCchhhHHHHHHhcCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDH-------------------SSLNGEILEELFRELTSLR  152 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-------------------~~l~~~~~~~~~~~~~~L~  152 (285)
                      ..+.+++.|.++.+.+..++. .+.++++|+.|+++++....                   ......+.+..|.++++|+
T Consensus        29 ~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~  108 (284)
T d1ozna_          29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (284)
T ss_dssp             TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCC
Confidence            466788999999998887554 68899999999998886430                   1112223355678889999


Q ss_pred             eeeecccccccccCCCcccccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcC-cccccccCCCcee
Q 043587          153 ALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEEL-PKGIGKLVNMKHL  230 (285)
Q Consensus       153 ~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L  230 (285)
                      +|+++     +|.+....+..+..+.+|+++++++|.++.+|+ .+..+++|+.|++++|. +..+ |..+..+++|+++
T Consensus       109 ~L~l~-----~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L~~l  182 (284)
T d1ozna_         109 TLHLD-----RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRL  182 (284)
T ss_dssp             EEECT-----TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred             EEecC-----CcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc-ccccchhhhccccccchh
Confidence            99999     888545456677788999999999999998875 56688999999999998 5555 4567889999999


Q ss_pred             ecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587          231 LNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       231 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      ++++|.+.+..|..|..+++|++|+++.   ....+..+..+++|+.|++++.
T Consensus       183 ~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            9999999888889999999999999988   4445567889999999998864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1e-16  Score=131.26  Aligned_cols=169  Identities=17%  Similarity=0.041  Sum_probs=137.4

Q ss_pred             eeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccccc
Q 043587           98 VRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKL  177 (285)
Q Consensus        98 l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l  177 (285)
                      ...++..+..+..+|..+.  +++++|++++|.      ...+++..|.++++|++|+|+     +|+ +..+| .++.+
T Consensus        12 ~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~------i~~l~~~~f~~l~~L~~L~L~-----~N~-l~~l~-~~~~l   76 (266)
T d1p9ag_          12 HLEVNCDKRNLTALPPDLP--KDTTILHLSENL------LYTFSLATLMPYTRLTQLNLD-----RAE-LTKLQ-VDGTL   76 (266)
T ss_dssp             CCEEECTTSCCSSCCSCCC--TTCCEEECTTSC------CSEEEGGGGTTCTTCCEEECT-----TSC-CCEEE-CCSCC
T ss_pred             CeEEEccCCCCCeeCcCcC--cCCCEEECcCCc------CCCcCHHHhhccccccccccc-----ccc-ccccc-ccccc
Confidence            3445566666666665543  589999999998      555666779999999999999     888 55665 45789


Q ss_pred             CCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCccccc
Q 043587          178 VHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEF  257 (285)
Q Consensus       178 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  257 (285)
                      ++|++|++++|+++..|..+.++++|+.|+++++......+..+..+.++++|++++|.+....+..+..+++|+.++++
T Consensus        77 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (266)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccc
Confidence            99999999999999999889999999999999998555455667889999999999998876556667889999999999


Q ss_pred             c---ccCCccccccCCcCCCceecccC
Q 043587          258 T---KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       258 ~---~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      +   ....+..+..+++|+.|++++..
T Consensus       157 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         157 NNNLTELPAGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccccCccccccccccceeecccCC
Confidence            8   44445568899999999998753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.66  E-value=6.2e-17  Score=135.65  Aligned_cols=79  Identities=15%  Similarity=0.062  Sum_probs=50.0

Q ss_pred             CCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCcee
Q 043587          201 YNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGI  277 (285)
Q Consensus       201 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i  277 (285)
                      ++|+.+++++|. ....+..++.+++|++|++++|++.+.+|..++++++|++|++++   .+..| .++++++|+.+++
T Consensus       221 ~~l~~l~~~~~~-l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l  298 (313)
T d1ogqa_         221 KNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAY  298 (313)
T ss_dssp             SCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGT
T ss_pred             cccccccccccc-ccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHh
Confidence            344455555544 222334566677777777777777777777777778888887776   33333 4566777777766


Q ss_pred             cccC
Q 043587          278 RRLG  281 (285)
Q Consensus       278 ~~~~  281 (285)
                      .+..
T Consensus       299 ~~N~  302 (313)
T d1ogqa_         299 ANNK  302 (313)
T ss_dssp             CSSS
T ss_pred             CCCc
Confidence            6543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=6.4e-16  Score=128.88  Aligned_cols=180  Identities=16%  Similarity=0.121  Sum_probs=110.9

Q ss_pred             CCCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccc---------
Q 043587           93 SLDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHS---------  162 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~---------  162 (285)
                      ..+.++++|+++.+.+..+++ .+.++++|++|++.++.      ...+.+..|..+++|++|++++|.+.         
T Consensus        28 ~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~------~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~  101 (305)
T d1xkua_          28 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK------ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT  101 (305)
T ss_dssp             SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTT
T ss_pred             CCCCCCCEEECcCCcCCCcChhHhhcccccccccccccc------ccccchhhhhCCCccCEecccCCccCcCccchhhh
Confidence            456789999999998887665 68899999999999987      44445666888888888888854210         


Q ss_pred             -------cccC--------------------------CCcccccccccCCCceEecccccccccchhhhcCCCccEEecC
Q 043587          163 -------RSSL--------------------------TPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDIS  209 (285)
Q Consensus       163 -------~~~~--------------------------~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~  209 (285)
                             .|.+                          ....+..+..+.+|+++++++|.+..+|..+  +++|+.|+++
T Consensus       102 l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~  179 (305)
T d1xkua_         102 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLD  179 (305)
T ss_dssp             CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECT
T ss_pred             hhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECC
Confidence                   0010                          0011123445566777777777766665432  4556666666


Q ss_pred             CCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc--ccCCccccccCCcCCCceeccc
Q 043587          210 GCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       210 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      +|......+..+..++.+++|++++|.+.+..|..+..+++|++|++++  -...+..+..+++|+.|+++++
T Consensus       180 ~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             TSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred             CCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCC
Confidence            6554444455555566666666666655544455555666666666655  2233445556666666665553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=8.4e-16  Score=121.30  Aligned_cols=164  Identities=16%  Similarity=0.248  Sum_probs=131.5

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ...++.+.+..+.+..+. .+..+++|++|++++|.      ...+ +. +..+++|++|+++     +|+ +..+| .+
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~------i~~l-~~-~~~l~~L~~L~l~-----~n~-i~~l~-~l  108 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK------LTDI-KP-LANLKNLGWLFLD-----ENK-VKDLS-SL  108 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC------CCCC-GG-GTTCTTCCEEECC-----SSC-CCCGG-GG
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCcc------ccCc-cc-cccCccccccccc-----ccc-ccccc-cc
Confidence            346788888888776544 47889999999999997      3343 22 6789999999999     888 55566 58


Q ss_pred             cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                      ..+++|+.|++++|.+..++ .+..+++|+.+++++|. +...+ .+..+++|+++++++|.+.+ ++ .++.+++|++|
T Consensus       109 ~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~-l~~~~-~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L  183 (210)
T d1h6ta2         109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-VLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNL  183 (210)
T ss_dssp             TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEE
T ss_pred             cccccccccccccccccccc-ccccccccccccccccc-ccccc-cccccccccccccccccccc-cc-cccCCCCCCEE
Confidence            88999999999999988775 68889999999999987 55544 67889999999999998764 44 38899999999


Q ss_pred             cccc-ccCCccccccCCcCCCceecc
Q 043587          255 GEFT-KACRLESLKNLEHLQICGIRR  279 (285)
Q Consensus       255 ~l~~-~~~~~~~l~~l~~L~~L~i~~  279 (285)
                      ++++ .-..+..+.++++|+.|++++
T Consensus       184 ~Ls~N~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         184 YLSKNHISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred             ECCCCCCCCChhhcCCCCCCEEEccC
Confidence            9998 333345689999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=2e-15  Score=118.04  Aligned_cols=160  Identities=18%  Similarity=0.227  Sum_probs=123.8

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ..+++.|.+..+.+..+ ..+..+++|++|++++|.      ...+.+  +.++++|+.|+++     +|. ...++ .+
T Consensus        39 l~~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~------l~~~~~--l~~l~~L~~L~l~-----~n~-~~~~~-~l  102 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQ------LTDITP--LKNLTKLVDILMN-----NNQ-IADIT-PL  102 (199)
T ss_dssp             HTTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSC------CCCCGG--GTTCTTCCEEECC-----SSC-CCCCG-GG
T ss_pred             hcCCCEEECCCCCCCCc-cccccCCCcCcCcccccc------ccCccc--ccCCccccccccc-----ccc-ccccc-cc
Confidence            45788888888877654 357888999999999997      333322  7889999999998     777 45554 47


Q ss_pred             cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                      ..++.|++|+++++....++ .+..+++|+.|++++|+ +..+| .+..+++|+.|++.+|.+.+ ++ .++.+++|++|
T Consensus       103 ~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L  177 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERL  177 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEE
T ss_pred             cccccccccccccccccccc-ccchhhhhHHhhhhhhh-hcccc-cccccccccccccccccccC-Cc-cccCCCCCCEE
Confidence            88999999999998877664 57889999999999987 66665 58889999999999997764 43 48889999999


Q ss_pred             cccc-ccCCccccccCCcCCCc
Q 043587          255 GEFT-KACRLESLKNLEHLQIC  275 (285)
Q Consensus       255 ~l~~-~~~~~~~l~~l~~L~~L  275 (285)
                      ++++ .-..+..+..+++|+.|
T Consensus       178 ~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         178 DISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEE
T ss_pred             ECCCCCCCCCccccCCCCCCcC
Confidence            9988 32334557777777754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.60  E-value=1.7e-15  Score=126.79  Aligned_cols=176  Identities=20%  Similarity=0.237  Sum_probs=129.7

Q ss_pred             CCceeEEEEEecCCcc---cccchhccccccEEeecC-CCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc
Q 043587           95 DEKVRHLMLIIGEGAI---FPVSTRRIKRMRSLLIDG-GRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI  170 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~-~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~  170 (285)
                      ..+|+.+++.++....   +|..++++++|++|++++ |.     +.+.+ |..+.++++|++|+++     +|++.+..
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~-----l~g~i-P~~i~~L~~L~~L~Ls-----~N~l~~~~  117 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-----LVGPI-PPAIAKLTQLHYLYIT-----HTNVSGAI  117 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-----EESCC-CGGGGGCTTCSEEEEE-----EECCEEEC
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccc-----ccccc-ccccccccccchhhhc-----cccccccc
Confidence            4478899999887664   678899999999999986 55     45565 5558999999999999     88866666


Q ss_pred             cccccccCCCceEeccccccc-ccchhhhcCCCccEEecCCCCCcCcCcccccccCCC-ceeecCCCCCCccc-------
Q 043587          171 PRNIEKLVHLRYLSLSFQHIE-KLPETLCELYNLETLDISGCFDLEELPKGIGKLVNM-KHLLNSRTSSVRYM-------  241 (285)
Q Consensus       171 p~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L-~~L~l~~~~~~~~~-------  241 (285)
                      +..+..+.+|++++++.|.+. .+|..+++++.|+++++++|...+.+|..++.+.++ +.++++.|++.+..       
T Consensus       118 ~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l  197 (313)
T d1ogqa_         118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             cccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc
Confidence            777888888888888888744 667788888888888888888666778777777665 66777666555443       


Q ss_pred             ----------------CCCCCCCCcCCcccccc--ccCCccccccCCcCCCceecccC
Q 043587          242 ----------------PVGIGRLTGLRTLGEFT--KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       242 ----------------p~~~~~l~~L~~L~l~~--~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                                      |..++.+++|+.+++..  ....+..+..+++|+.|+++++.
T Consensus       198 ~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~  255 (313)
T d1ogqa_         198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccCccCe
Confidence                            44455666666666665  22234456777778877776653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1.2e-14  Score=113.53  Aligned_cols=148  Identities=21%  Similarity=0.290  Sum_probs=121.1

Q ss_pred             chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccccc
Q 043587          114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL  193 (285)
Q Consensus       114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l  193 (285)
                      ....+.++++|++.++.      ...+ +. ++.+++|++|+++     +|++ ..++ .++.+++|++|++++|.+..+
T Consensus        35 ~~~~l~~l~~L~l~~~~------i~~l-~~-l~~l~nL~~L~Ls-----~N~l-~~~~-~l~~l~~L~~L~l~~n~~~~~   99 (199)
T d2omxa2          35 SQTDLDQVTTLQADRLG------IKSI-DG-VEYLNNLTQINFS-----NNQL-TDIT-PLKNLTKLVDILMNNNQIADI   99 (199)
T ss_dssp             CHHHHTTCCEEECTTSC------CCCC-TT-GGGCTTCCEEECC-----SSCC-CCCG-GGTTCTTCCEEECCSSCCCCC
T ss_pred             CHHHhcCCCEEECCCCC------CCCc-cc-cccCCCcCcCccc-----cccc-cCcc-cccCCcccccccccccccccc
Confidence            34678999999999998      3343 32 7889999999999     8884 4444 388999999999999999888


Q ss_pred             chhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc-ccCCccccccCCcC
Q 043587          194 PETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-KACRLESLKNLEHL  272 (285)
Q Consensus       194 p~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~L  272 (285)
                      + .+.++++|+.|++++|. ....+ .+..+++|+.|++++|.+. .+| .+..+++|++|++.+ .-..+..++++++|
T Consensus       100 ~-~l~~l~~L~~L~l~~~~-~~~~~-~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L  174 (199)
T d2omxa2         100 T-PLANLTNLTGLTLFNNQ-ITDID-PLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLKPLANLTTL  174 (199)
T ss_dssp             G-GGTTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred             c-ccccccccccccccccc-ccccc-ccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCccccCCCCC
Confidence            7 58899999999999987 44443 5889999999999999765 444 588999999999988 33445568999999


Q ss_pred             CCceecccC
Q 043587          273 QICGIRRLG  281 (285)
Q Consensus       273 ~~L~i~~~~  281 (285)
                      +.|++++++
T Consensus       175 ~~L~ls~N~  183 (199)
T d2omxa2         175 ERLDISSNK  183 (199)
T ss_dssp             CEEECCSSC
T ss_pred             CEEECCCCC
Confidence            999999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.7e-14  Score=103.79  Aligned_cols=85  Identities=18%  Similarity=0.183  Sum_probs=42.1

Q ss_pred             HhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCc--cccc
Q 043587          145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELP--KGIG  222 (285)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~l~  222 (285)
                      +..+++|++|+++     +|. +..+|..++.+++|++|++++|.++.+| +++++++|++|++++|+ ++.+|  ..++
T Consensus        16 l~~l~~L~~L~ls-----~N~-l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~   87 (124)
T d1dcea3          16 LEQLLLVTHLDLS-----HNR-LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLV   87 (124)
T ss_dssp             GGGGTTCCEEECC-----SSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGG
T ss_pred             cccCCCCCEEECC-----CCc-cCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc-cCCCCCchhhc
Confidence            4445555555555     444 3344444555555555555555555543 34555555555555554 33333  2344


Q ss_pred             ccCCCceeecCCCCC
Q 043587          223 KLVNMKHLLNSRTSS  237 (285)
Q Consensus       223 ~l~~L~~L~l~~~~~  237 (285)
                      .+++|++|++++|++
T Consensus        88 ~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          88 SCPRLVLLNLQGNSL  102 (124)
T ss_dssp             GCTTCCEEECTTSGG
T ss_pred             CCCCCCEEECCCCcC
Confidence            455555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=3.5e-14  Score=111.80  Aligned_cols=145  Identities=17%  Similarity=0.250  Sum_probs=119.6

Q ss_pred             hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccch
Q 043587          116 RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE  195 (285)
Q Consensus       116 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~  195 (285)
                      .++.+|+.|++.++.      ...+ +. +..+++|++|+++     +|. +..++ .++.+++|++|++++|+++.+| 
T Consensus        43 ~~L~~L~~L~l~~~~------i~~l-~~-l~~l~~L~~L~L~-----~n~-i~~l~-~~~~l~~L~~L~l~~n~i~~l~-  106 (210)
T d1h6ta2          43 NELNSIDQIIANNSD------IKSV-QG-IQYLPNVTKLFLN-----GNK-LTDIK-PLANLKNLGWLFLDENKVKDLS-  106 (210)
T ss_dssp             HHHHTCCEEECTTSC------CCCC-TT-GGGCTTCCEEECC-----SSC-CCCCG-GGTTCTTCCEEECCSSCCCCGG-
T ss_pred             HHhcCccEEECcCCC------CCCc-hh-HhhCCCCCEEeCC-----Ccc-ccCcc-ccccCccccccccccccccccc-
Confidence            567899999999998      3343 22 7889999999999     888 44455 4788999999999999999987 


Q ss_pred             hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc-ccCCccccccCCcCCC
Q 043587          196 TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT-KACRLESLKNLEHLQI  274 (285)
Q Consensus       196 ~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~l~~l~~L~~  274 (285)
                      .+..+++|+.|++++|. ...++ .+..+++|+.++++.|.+..  +..+..+++|+++++++ ....+..+.++++|+.
T Consensus       107 ~l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~  182 (210)
T d1h6ta2         107 SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN  182 (210)
T ss_dssp             GGTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCE
T ss_pred             ccccccccccccccccc-ccccc-cccccccccccccccccccc--cccccccccccccccccccccccccccCCCCCCE
Confidence            58899999999999998 55555 68899999999999997763  34578899999999998 3334556899999999


Q ss_pred             ceeccc
Q 043587          275 CGIRRL  280 (285)
Q Consensus       275 L~i~~~  280 (285)
                      |+++++
T Consensus       183 L~Ls~N  188 (210)
T d1h6ta2         183 LYLSKN  188 (210)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            999876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3e-14  Score=117.44  Aligned_cols=171  Identities=18%  Similarity=0.152  Sum_probs=130.9

Q ss_pred             EEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeeccccc--------------------
Q 043587          102 MLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYH--------------------  161 (285)
Q Consensus       102 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~--------------------  161 (285)
                      .....+...+|..+.  +.+++|++++|.      ...+++..|.++++|++|+++++.+                    
T Consensus        17 ~c~~~~L~~iP~~ip--~~~~~L~Ls~N~------i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          17 SCPQQGLQAVPVGIP--AASQRIFLHGNR------ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             ECCSSCCSSCCTTCC--TTCSEEECTTSC------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EcCCCCCCccCCCCC--CCCCEEECcCCc------CCCCCHHHhhccccccccccccccccccccccccccccccccccc
Confidence            344444555555443  578999999998      5566667799999999999996532                    


Q ss_pred             ccccCCCcccccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCc
Q 043587          162 SRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVR  239 (285)
Q Consensus       162 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~  239 (285)
                      ..+.+....|..+..+++|++|++++|.+..++. .+....+|+.+++++|. ++.+| ..+..+++|++|++++|.+..
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~  167 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS  167 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCcccc
Confidence            1222122235667888999999999999887654 56678999999999998 56665 557889999999999998876


Q ss_pred             ccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceecccC
Q 043587          240 YMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLG  281 (285)
Q Consensus       240 ~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~  281 (285)
                      ..|..+..+++|+.+.+.+   ....+..+..+++|+.|++++..
T Consensus       168 l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccc
Confidence            6677889999999999987   44456778999999999988654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.3e-15  Score=111.24  Aligned_cols=129  Identities=22%  Similarity=0.201  Sum_probs=96.6

Q ss_pred             chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccccccc
Q 043587          114 STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKL  193 (285)
Q Consensus       114 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~l  193 (285)
                      .+.++.++|.|++++|.      ...+ +..+..+++|++|+++     +|. +..++ .+..+++|++|++++|.++.+
T Consensus        13 ~~~n~~~lr~L~L~~n~------I~~i-~~~~~~l~~L~~L~Ls-----~N~-i~~l~-~~~~l~~L~~L~ls~N~i~~l   78 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYK------IPVI-ENLGATLDQFDAIDFS-----DNE-IRKLD-GFPLLRRLKTLLVNNNRICRI   78 (162)
T ss_dssp             EEECTTSCEEEECTTSC------CCSC-CCGGGGTTCCSEEECC-----SSC-CCEEC-CCCCCSSCCEEECCSSCCCEE
T ss_pred             hccCcCcCcEEECCCCC------CCcc-CccccccccCCEEECC-----CCC-CCccC-CcccCcchhhhhcccccccCC
Confidence            44566788889998887      4444 3445778889999998     887 55554 577888999999999998888


Q ss_pred             chhh-hcCCCccEEecCCCCCcCcCcc--cccccCCCceeecCCCCCCcccCC----CCCCCCcCCcccccc
Q 043587          194 PETL-CELYNLETLDISGCFDLEELPK--GIGKLVNMKHLLNSRTSSVRYMPV----GIGRLTGLRTLGEFT  258 (285)
Q Consensus       194 p~~i-~~l~~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~l~~  258 (285)
                      |+.+ ..+++|++|++++|+ +..++.  .+..+++|++|++++|++. ..|.    .+..+++|+.|+...
T Consensus        79 ~~~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          79 GEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             CSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred             Cccccccccccccceecccc-ccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCCCC
Confidence            7654 568899999999987 666653  5778889999999988765 4443    366777888777544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.50  E-value=5e-15  Score=115.12  Aligned_cols=127  Identities=19%  Similarity=0.181  Sum_probs=87.6

Q ss_pred             EEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCC
Q 043587          100 HLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVH  179 (285)
Q Consensus       100 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~  179 (285)
                      .+..+.+....+|..+.  +++++|++++|.     +...+.+..|.++++|+.|+++     +|.+....+..+..+.+
T Consensus        12 ~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~-----i~~~~~~~~f~~l~~L~~L~L~-----~N~i~~~~~~~~~~~~~   79 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIP--LHTTELLLNDNE-----LGRISSDGLFGRLPHLVKLELK-----RNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSCC-----CCSBCCSCSGGGCTTCCEEECC-----SSCCCCBCTTTTTTCTT
T ss_pred             EEEEeCCCcCccCCCCC--CCCCEEEeCCCC-----CcccccccccCCCceEeeeecc-----ccccccccccccccccc
Confidence            34444555555555442  577888888887     2333345557778888888888     77755666677777888


Q ss_pred             CceEecccccccccch-hhhcCCCccEEecCCCCCcCcCc-ccccccCCCceeecCCCCCCc
Q 043587          180 LRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELP-KGIGKLVNMKHLLNSRTSSVR  239 (285)
Q Consensus       180 L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~  239 (285)
                      |++|++++|+++.+|+ .+.++++|++|+|++|+ ++.+| ..+..+++|++|++++|++..
T Consensus        80 L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cceeeeccccccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCccccccccccccccc
Confidence            8888888888887764 46678888888888887 55554 346778888888888876553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=2.6e-14  Score=102.82  Aligned_cols=97  Identities=24%  Similarity=0.296  Sum_probs=82.1

Q ss_pred             ceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceee
Q 043587          152 RALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLL  231 (285)
Q Consensus       152 ~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~  231 (285)
                      |+|+++     +|+ ...++ .+..+.+|++|++++|.++.+|+.++.+++|++|++++|. ++.+| .++.+++|++|+
T Consensus         1 R~L~Ls-----~n~-l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLA-----HKD-LTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELL   71 (124)
T ss_dssp             SEEECT-----TSC-CSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEE
T ss_pred             CEEEcC-----CCC-CCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccC-ccccccccCeEE
Confidence            678998     888 45665 4888999999999999999999889999999999999998 77776 588999999999


Q ss_pred             cCCCCCCcccC--CCCCCCCcCCcccccc
Q 043587          232 NSRTSSVRYMP--VGIGRLTGLRTLGEFT  258 (285)
Q Consensus       232 l~~~~~~~~~p--~~~~~l~~L~~L~l~~  258 (285)
                      +++|.+.. +|  ..++.+++|+.|++.+
T Consensus        72 l~~N~i~~-~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          72 LCNNRLQQ-SAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CCSSCCCS-SSTTGGGGGCTTCCEEECTT
T ss_pred             CCCCccCC-CCCchhhcCCCCCCEEECCC
Confidence            99997763 33  4578889999999887

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=2.9e-13  Score=107.72  Aligned_cols=164  Identities=18%  Similarity=0.266  Sum_probs=97.4

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      .++++.+.+..+.+.... .+..+++++++.+.++.      ...+ +. +.++++|+.++++     ++.... + ..+
T Consensus        62 l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~------~~~i-~~-l~~l~~L~~l~l~-----~~~~~~-~-~~~  125 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLA-PLKNLTKITELELSGNP------LKNV-SA-IAGLQSIKTLDLT-----STQITD-V-TPL  125 (227)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCC------CSCC-GG-GTTCTTCCEEECT-----TSCCCC-C-GGG
T ss_pred             CCCCcEeecCCceeeccc-ccccccccccccccccc------cccc-cc-ccccccccccccc-----cccccc-c-chh
Confidence            445555555554443322 24455555555555544      2221 11 4445555555555     444221 1 123


Q ss_pred             cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                      ...+.++++.++++.+...+ .+.+.++|+.|++++|. +...+ .++++++|++|++++|++. .+| .++.+++|++|
T Consensus       126 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~Ls~n~l~-~l~-~l~~l~~L~~L  200 (227)
T d1h6ua2         126 AGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQ-VSDLT-PLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEV  200 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCCEE
T ss_pred             ccccchhhhhchhhhhchhh-hhccccccccccccccc-cccch-hhcccccceecccCCCccC-CCh-hhcCCCCCCEE
Confidence            34455555555555544433 35677888899988887 54444 4788899999999988765 454 37888899999


Q ss_pred             cccc-ccCCccccccCCcCCCceecc
Q 043587          255 GEFT-KACRLESLKNLEHLQICGIRR  279 (285)
Q Consensus       255 ~l~~-~~~~~~~l~~l~~L~~L~i~~  279 (285)
                      ++++ .-..+..+..+++|+.|++++
T Consensus       201 ~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         201 HLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             ECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             ECcCCcCCCCcccccCCCCCEEEeeC
Confidence            9888 333345688888888888863

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.6e-14  Score=117.84  Aligned_cols=176  Identities=17%  Similarity=0.154  Sum_probs=123.4

Q ss_pred             CCCceeEEEEEecCCcc--cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCc--
Q 043587           94 LDEKVRHLMLIIGEGAI--FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPE--  169 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--  169 (285)
                      ....+++++++.+.+..  +...+..+++|++|.+.++.     +... ....+..+++|+.|+++     +|...+.  
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-----l~~~-~~~~l~~~~~L~~L~Ls-----~c~~itd~~  112 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-----LSDP-IVNTLAKNSNLVRLNLS-----GCSGFSEFA  112 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-----CCHH-HHHHHTTCTTCSEEECT-----TCBSCCHHH
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-----CCcH-HHHHHhcCCCCcCcccc-----ccccccccc
Confidence            45578888887765543  44567788999999999887     3444 35558888999999998     7543432  


Q ss_pred             ccccccccCCCceEeccccc-cc--ccchhhhc-CCCccEEecCCCCC-cCc--CcccccccCCCceeecCCCC-CCccc
Q 043587          170 IPRNIEKLVHLRYLSLSFQH-IE--KLPETLCE-LYNLETLDISGCFD-LEE--LPKGIGKLVNMKHLLNSRTS-SVRYM  241 (285)
Q Consensus       170 ~p~~i~~l~~L~~L~l~~~~-l~--~lp~~i~~-l~~L~~L~l~~~~~-~~~--lp~~l~~l~~L~~L~l~~~~-~~~~~  241 (285)
                      +..-...+++|++|++++|. ++  .++..+.. .++|+.|++++|.. +..  +.....++++|++|++++|. +....
T Consensus       113 l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~  192 (284)
T d2astb2         113 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC  192 (284)
T ss_dssp             HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred             cchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchh
Confidence            23334567899999999875 44  23333443 46789999988641 221  33334567889999998875 44456


Q ss_pred             CCCCCCCCcCCcccccc----ccCCccccccCCcCCCceeccc
Q 043587          242 PVGIGRLTGLRTLGEFT----KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       242 p~~~~~l~~L~~L~l~~----~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      +..+.++++|++|++++    ....+..++++++|+.|++++|
T Consensus       193 ~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         193 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            66788888999999886    4456667888888999988877

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=3.6e-13  Score=107.15  Aligned_cols=165  Identities=16%  Similarity=0.216  Sum_probs=129.6

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ..+++.+.+.++.+..+ ..+..+++|++|++++|.      ...+.+  +..++++++++++     +|. ...++ .+
T Consensus        40 l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~------i~~~~~--l~~l~~l~~l~~~-----~n~-~~~i~-~l  103 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQ------ITDLAP--LKNLTKITELELS-----GNP-LKNVS-AI  103 (227)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSC------CCCCGG--GTTCCSCCEEECC-----SCC-CSCCG-GG
T ss_pred             cCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCce------eecccc--ccccccccccccc-----ccc-ccccc-cc
Confidence            45788999998888766 468899999999999997      333322  7889999999998     777 44554 57


Q ss_pred             cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                      ..+++|++++++++....++ .+...+.++.+.++++. ....+ .+...++|++|++++|.+...  ..++.+++|++|
T Consensus       104 ~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~~-~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L  178 (227)
T d1h6ua2         104 AGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTL  178 (227)
T ss_dssp             TTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSC-CCCCG-GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             cccccccccccccccccccc-hhccccchhhhhchhhh-hchhh-hhccccccccccccccccccc--hhhcccccceec
Confidence            88999999999999877664 46677889999998887 44443 477888999999999876533  348889999999


Q ss_pred             cccc-ccCCccccccCCcCCCceeccc
Q 043587          255 GEFT-KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       255 ~l~~-~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      ++++ .-..+..+.++++|+.|+++++
T Consensus       179 ~Ls~n~l~~l~~l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         179 KADDNKISDISPLASLPNLIEVHLKNN  205 (227)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECTTS
T ss_pred             ccCCCccCCChhhcCCCCCCEEECcCC
Confidence            9988 3333556889999999999987

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.6e-14  Score=107.78  Aligned_cols=127  Identities=18%  Similarity=0.207  Sum_probs=102.3

Q ss_pred             HhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCccc-ccc
Q 043587          145 FRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKG-IGK  223 (285)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~-l~~  223 (285)
                      |.+...++.|+|+     +|+ +..++..+..+.+|++|++++|.++.++ .+..+++|++|++++|+ +..+|.. +..
T Consensus        14 ~~n~~~lr~L~L~-----~n~-I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~   85 (162)
T d1a9na_          14 YTNAVRDRELDLR-----GYK-IPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQA   85 (162)
T ss_dssp             EECTTSCEEEECT-----TSC-CCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHH
T ss_pred             ccCcCcCcEEECC-----CCC-CCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCcccccc
Confidence            4567789999999     888 6667766678999999999999999985 68899999999999998 7777665 467


Q ss_pred             cCCCceeecCCCCCCcccC--CCCCCCCcCCccccccc--cCC----ccccccCCcCCCceeccc
Q 043587          224 LVNMKHLLNSRTSSVRYMP--VGIGRLTGLRTLGEFTK--ACR----LESLKNLEHLQICGIRRL  280 (285)
Q Consensus       224 l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~--~~~----~~~l~~l~~L~~L~i~~~  280 (285)
                      +++|++|++++|++. .++  ..+..+++|++|++.+.  ...    ...+..+++|+.||-..+
T Consensus        86 l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i  149 (162)
T d1a9na_          86 LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  149 (162)
T ss_dssp             CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             ccccccceecccccc-ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCCC
Confidence            999999999999876 343  35788999999999981  111    224778899998875543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=3.5e-13  Score=115.09  Aligned_cols=164  Identities=16%  Similarity=0.231  Sum_probs=106.6

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ..+++.+.+.++..... +.+..+++|+.|.+.+|.      ...+ +. +..+++|++|+++     ++++ ..++ .+
T Consensus       218 ~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~------l~~~-~~-~~~~~~L~~L~l~-----~~~l-~~~~-~~  281 (384)
T d2omza2         218 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ------ISNL-AP-LSGLTKLTELKLG-----ANQI-SNIS-PL  281 (384)
T ss_dssp             CTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC------CCCC-GG-GTTCTTCSEEECC-----SSCC-CCCG-GG
T ss_pred             cCCCCEEECCCCCCCCc-chhhcccccchhccccCc------cCCC-Cc-ccccccCCEeecc-----Cccc-CCCC-cc
Confidence            34555555555554432 244555666666666665      2221 11 4556666666666     5552 2232 24


Q ss_pred             cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                      ..+..++++.++.|.++.++ .+..+++++.|++++|+ +..++ .+..+++|++|++++|++. .+| .++.+++|++|
T Consensus       282 ~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~-l~~l~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L  356 (384)
T d2omza2         282 AGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNN-ISDIS-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWL  356 (384)
T ss_dssp             TTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSC-CSCCG-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEE
T ss_pred             cccccccccccccccccccc-ccchhcccCeEECCCCC-CCCCc-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEE
Confidence            45566666666666666554 46778889999999887 66665 4888999999999999765 454 58889999999


Q ss_pred             cccc-ccCCccccccCCcCCCceecc
Q 043587          255 GEFT-KACRLESLKNLEHLQICGIRR  279 (285)
Q Consensus       255 ~l~~-~~~~~~~l~~l~~L~~L~i~~  279 (285)
                      ++++ .-.....+.++++|+.|+|++
T Consensus       357 ~l~~N~l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         357 SAGHNQISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             ECCSSCCCBCGGGTTCTTCSEEECCC
T ss_pred             ECCCCcCCCChhhccCCCCCEeeCCC
Confidence            9987 222333488888999998875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=1.1e-13  Score=115.05  Aligned_cols=166  Identities=20%  Similarity=0.225  Sum_probs=115.5

Q ss_pred             eEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccC
Q 043587           99 RHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLV  178 (285)
Q Consensus        99 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~  178 (285)
                      +.++..+.....+|..+.  +++++|++++|.      ...+++.+|.++++|++|+++     +|.+....|..+..++
T Consensus        13 ~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~------i~~l~~~~f~~l~~L~~L~l~-----~n~~~~i~~~~f~~l~   79 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDLP--PDTALLDLQNNK------ITEIKDGDFKNLKNLHTLILI-----NNKISKISPGAFAPLV   79 (305)
T ss_dssp             TEEECTTSCCCSCCCSCC--TTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECC-----SSCCCCBCTTTTTTCT
T ss_pred             CEEEecCCCCCccCCCCC--CCCCEEECcCCc------CCCcChhHhhccccccccccc-----cccccccchhhhhCCC
Confidence            445555555665666553  689999999998      556556678999999999999     8886665678899999


Q ss_pred             CCceEecccccccccchhh------------------------------------------------hcCCCccEEecCC
Q 043587          179 HLRYLSLSFQHIEKLPETL------------------------------------------------CELYNLETLDISG  210 (285)
Q Consensus       179 ~L~~L~l~~~~l~~lp~~i------------------------------------------------~~l~~L~~L~l~~  210 (285)
                      +|++|++++|+++.+|..+                                                ..+++|+.+++++
T Consensus        80 ~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~  159 (305)
T d1xkua_          80 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  159 (305)
T ss_dssp             TCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             ccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccccc
Confidence            9999999998876554322                                                2233455555555


Q ss_pred             CCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcccccc---ccCCccccccCCcCCCceeccc
Q 043587          211 CFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       211 ~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      |. +..+|..+  +++|++|++++|......+..+..++.++.|++++   ....+..+..+++|+.|+++++
T Consensus       160 n~-l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N  229 (305)
T d1xkua_         160 TN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN  229 (305)
T ss_dssp             SC-CCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred             CC-ccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc
Confidence            54 44444332  45666666666666656666677777888887776   3334556777888888888765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=7.9e-14  Score=108.16  Aligned_cols=141  Identities=12%  Similarity=0.035  Sum_probs=108.6

Q ss_pred             CCCCceeEEEEEecCCcc--cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcc
Q 043587           93 SLDEKVRHLMLIIGEGAI--FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEI  170 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~  170 (285)
                      ..+.++++|.++.+.+..  ....|.++++|+.|++++|.      ...+++..|..+++|+.|+++     +|++....
T Consensus        26 ~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~------i~~~~~~~~~~~~~L~~L~Ls-----~N~l~~l~   94 (192)
T d1w8aa_          26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ------LTGIEPNAFEGASHIQELQLG-----ENKIKEIS   94 (192)
T ss_dssp             CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC------CCCBCTTTTTTCTTCCEEECC-----SCCCCEEC
T ss_pred             CCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccc------cccccccccccccccceeeec-----cccccccC
Confidence            567899999999999865  45678899999999999998      444457778999999999999     99855445


Q ss_pred             cccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCC
Q 043587          171 PRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGI  245 (285)
Q Consensus       171 p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~  245 (285)
                      |..|.++++|++|+|++|.++.+|+ .+..+++|++|++++|. ....+....-...++.+.+..+.+....|..+
T Consensus        95 ~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~-~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l  169 (192)
T d1w8aa_          95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP-FNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV  169 (192)
T ss_dssp             SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC-BCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTT
T ss_pred             HHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc-cccccchHHHhhhhhhhcccCCCeEeCCChhh
Confidence            6678999999999999999999976 46789999999999998 44433222222345666666665554555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.2e-13  Score=107.61  Aligned_cols=181  Identities=16%  Similarity=0.175  Sum_probs=118.0

Q ss_pred             CCCCceeEEEEEecCCccccc-chhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFPV-STRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ..+.+++.|.+..+.+..++. .|.++++|++|++++|..     ...+.+..|.+++.++.+.+..    .+++....+
T Consensus        26 ~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~-----~~~i~~~~f~~l~~l~~l~~~~----~n~l~~~~~   96 (242)
T d1xwdc1          26 DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-----LEVIEADVFSNLPKLHEIRIEK----ANNLLYINP   96 (242)
T ss_dssp             CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTT-----CCEECSSSEESCTTCCEEEEEC----CTTCCEECT
T ss_pred             CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccc-----cceeeccccccccccccccccc----ccccccccc
Confidence            456789999999988877554 678999999999998872     3333344466677777776651    234333344


Q ss_pred             ccccccCCCceEecccccccccch--hh------------------------hcC-CCccEEecCCCCCcCcCccccccc
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPE--TL------------------------CEL-YNLETLDISGCFDLEELPKGIGKL  224 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~--~i------------------------~~l-~~L~~L~l~~~~~~~~lp~~l~~l  224 (285)
                      ..+..+++|++++++++.+...+.  .+                        .++ ..++.|++.+|+ ++.++......
T Consensus        97 ~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~-l~~i~~~~~~~  175 (242)
T d1xwdc1          97 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNCAFNG  175 (242)
T ss_dssp             TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTTTTT
T ss_pred             ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc-ccccccccccc
Confidence            556677777777777776553322  11                        112 245566666665 55555555555


Q ss_pred             CCCceeec-CCCCCCcccCC-CCCCCCcCCcccccc---ccCCccccccCCcCCCceecccCCCC
Q 043587          225 VNMKHLLN-SRTSSVRYMPV-GIGRLTGLRTLGEFT---KACRLESLKNLEHLQICGIRRLGYVS  284 (285)
Q Consensus       225 ~~L~~L~l-~~~~~~~~~p~-~~~~l~~L~~L~l~~---~~~~~~~l~~l~~L~~L~i~~~~~~~  284 (285)
                      +++..+.. .+|.+. .+|. .+..+++|++|++++   .......+.++++|+.|++.+++.+.
T Consensus       176 ~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         176 TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             CCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESSSCSC
T ss_pred             hhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCCCcCC
Confidence            66655544 444444 5654 478899999999988   22223558999999999998888765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.7e-14  Score=116.30  Aligned_cols=160  Identities=19%  Similarity=0.182  Sum_probs=121.9

Q ss_pred             hccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCCCceEeccccc-ccc--
Q 043587          116 RRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQH-IEK--  192 (285)
Q Consensus       116 ~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~-l~~--  192 (285)
                      ....+|++|+++++.     +....+...+..+++|++|+++     +|.+....+..+..+++|++|++++|. ++.  
T Consensus        43 ~~~~~L~~LdLs~~~-----i~~~~l~~l~~~c~~L~~L~L~-----~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~  112 (284)
T d2astb2          43 FSPFRVQHMDLSNSV-----IEVSTLHGILSQCSKLQNLSLE-----GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA  112 (284)
T ss_dssp             CCCBCCCEEECTTCE-----ECHHHHHHHHTTBCCCSEEECT-----TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH
T ss_pred             ccCCCCCEEECCCCc-----cCHHHHHHHHHhCCCccccccc-----ccCCCcHHHHHHhcCCCCcCccccccccccccc
Confidence            345689999999987     4555567778999999999999     888555667788899999999999975 652  


Q ss_pred             cchhhhcCCCccEEecCCCCCcCc--Ccccccc-cCCCceeecCCCC--CCc-ccCCCCCCCCcCCcccccc----ccCC
Q 043587          193 LPETLCELYNLETLDISGCFDLEE--LPKGIGK-LVNMKHLLNSRTS--SVR-YMPVGIGRLTGLRTLGEFT----KACR  262 (285)
Q Consensus       193 lp~~i~~l~~L~~L~l~~~~~~~~--lp~~l~~-l~~L~~L~l~~~~--~~~-~~p~~~~~l~~L~~L~l~~----~~~~  262 (285)
                      +..-..++++|+.|++++|..+..  ++..+.. .++|++|+++++.  +.. .+......+++|++|++++    ....
T Consensus       113 l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~  192 (284)
T d2astb2         113 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC  192 (284)
T ss_dssp             HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred             cchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchh
Confidence            333345789999999999875543  2233444 4689999999863  222 2333346789999999987    4567


Q ss_pred             ccccccCCcCCCceecccCCCCC
Q 043587          263 LESLKNLEHLQICGIRRLGYVSD  285 (285)
Q Consensus       263 ~~~l~~l~~L~~L~i~~~~~~~~  285 (285)
                      +..+.++++|+.|++++|.++.|
T Consensus       193 ~~~l~~~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         193 FQEFFQLNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             GGGGGGCTTCCEEECTTCTTCCG
T ss_pred             hhhhcccCcCCEEECCCCCCCCh
Confidence            78899999999999999988764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=3.8e-15  Score=116.26  Aligned_cols=145  Identities=18%  Similarity=0.189  Sum_probs=102.6

Q ss_pred             ceeEEEEEec--CCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           97 KVRHLMLIIG--EGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        97 ~l~~L~l~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ....+.+...  .+..++..+..+++|++|++++|.      ...+ +. +..+++|++|+++     +|. +..+|...
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~------I~~i-~~-l~~l~~L~~L~Ls-----~N~-i~~i~~~~   89 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN------IEKI-SS-LSGMENLRILSLG-----RNL-IKKIENLD   89 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEE------ESCC-CC-HHHHTTCCEEECC-----EEE-ECSCSSHH
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccC------CCCc-cc-ccCCccccChhhc-----ccc-cccccccc
Confidence            3444444432  344456778888899999998887      4444 32 6788889999998     777 55666555


Q ss_pred             cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCc--ccccccCCCceeecCCCCCCcccCCC--------
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELP--KGIGKLVNMKHLLNSRTSSVRYMPVG--------  244 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp--~~l~~l~~L~~L~l~~~~~~~~~p~~--------  244 (285)
                      ..++.|++|++++|.++.++ .+..+++|++|++++|+ +..++  ..+..+++|++|++++|++....+..        
T Consensus        90 ~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~  167 (198)
T d1m9la_          90 AVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI  167 (198)
T ss_dssp             HHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHH
T ss_pred             cccccccccccccccccccc-cccccccccccccccch-hccccccccccCCCccceeecCCCccccCcccccchhhHHH
Confidence            56678899999998888775 57788889999999887 66665  35788889999999888766443332        


Q ss_pred             --CCCCCcCCccccc
Q 043587          245 --IGRLTGLRTLGEF  257 (285)
Q Consensus       245 --~~~l~~L~~L~l~  257 (285)
                        +..+++|+.|+..
T Consensus       168 ~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         168 EVVKRLPNLKKLDGM  182 (198)
T ss_dssp             HHHHHCSSCCEESSG
T ss_pred             HHHHHCCCcCEeCCc
Confidence              3456666666643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=9.1e-12  Score=106.09  Aligned_cols=165  Identities=20%  Similarity=0.258  Sum_probs=124.3

Q ss_pred             CCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccc
Q 043587           95 DEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNI  174 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i  174 (285)
                      ..+++.+.+..+.....+ ....+++|++|++.+|.      ...+ + .+..+++|+.|+++     +|.+. .++ .+
T Consensus       196 l~~~~~l~l~~n~i~~~~-~~~~~~~L~~L~l~~n~------l~~~-~-~l~~l~~L~~L~l~-----~n~l~-~~~-~~  259 (384)
T d2omza2         196 LTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQ------LKDI-G-TLASLTNLTDLDLA-----NNQIS-NLA-PL  259 (384)
T ss_dssp             CTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSC------CCCC-G-GGGGCTTCSEEECC-----SSCCC-CCG-GG
T ss_pred             ccccceeeccCCccCCCC-cccccCCCCEEECCCCC------CCCc-c-hhhcccccchhccc-----cCccC-CCC-cc
Confidence            455667777776665443 34667788888888887      3332 2 36778888888888     77744 343 37


Q ss_pred             cccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCcc
Q 043587          175 EKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTL  254 (285)
Q Consensus       175 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L  254 (285)
                      +.+++|++|+++++.++.++ .+..++.++.+.+..|. +..++ .+..++++++|++++|.+.+ ++ .+..+++|++|
T Consensus       260 ~~~~~L~~L~l~~~~l~~~~-~~~~~~~l~~l~~~~n~-l~~~~-~~~~~~~l~~L~ls~n~l~~-l~-~l~~l~~L~~L  334 (384)
T d2omza2         260 SGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQ-LEDIS-PISNLKNLTYLTLYFNNISD-IS-PVSSLTKLQRL  334 (384)
T ss_dssp             TTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CSCCG-GGGGCTTCSEEECCSSCCSC-CG-GGGGCTTCCEE
T ss_pred             cccccCCEeeccCcccCCCC-ccccccccccccccccc-ccccc-ccchhcccCeEECCCCCCCC-Cc-ccccCCCCCEE
Confidence            77888999999888888776 46778888899888887 55544 58889999999999998875 43 38899999999


Q ss_pred             cccc-ccCCccccccCCcCCCceeccc
Q 043587          255 GEFT-KACRLESLKNLEHLQICGIRRL  280 (285)
Q Consensus       255 ~l~~-~~~~~~~l~~l~~L~~L~i~~~  280 (285)
                      ++++ .-..+..+..+++|+.|+++++
T Consensus       335 ~L~~n~l~~l~~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         335 FFANNKVSDVSSLANLTNINWLSAGHN  361 (384)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred             ECCCCCCCCChhHcCCCCCCEEECCCC
Confidence            9998 3334557999999999999875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=7e-14  Score=108.94  Aligned_cols=129  Identities=24%  Similarity=0.231  Sum_probs=102.5

Q ss_pred             HHHHhcCCccceeeecccccccccCCCcccccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccc
Q 043587          142 EELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGI  221 (285)
Q Consensus       142 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l  221 (285)
                      +..+..+++|+.|+++     +|+ +..++ .+..+++|++|++++|.++.+|.....+++|++|++++|. ++.++ .+
T Consensus        41 ~~sl~~L~~L~~L~Ls-----~n~-I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~-~~  111 (198)
T d1m9la_          41 DATLSTLKACKHLALS-----TNN-IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GI  111 (198)
T ss_dssp             HHHHHHTTTCCEEECS-----EEE-ESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE-CCCHH-HH
T ss_pred             hhHHhcccccceeECc-----ccC-CCCcc-cccCCccccChhhccccccccccccccccccccccccccc-ccccc-cc
Confidence            5568999999999999     888 55665 5889999999999999999998766667789999999997 77665 58


Q ss_pred             cccCCCceeecCCCCCCcccC--CCCCCCCcCCccccccc------cCC-------ccccccCCcCCCceeccc
Q 043587          222 GKLVNMKHLLNSRTSSVRYMP--VGIGRLTGLRTLGEFTK------ACR-------LESLKNLEHLQICGIRRL  280 (285)
Q Consensus       222 ~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~------~~~-------~~~l~~l~~L~~L~i~~~  280 (285)
                      ..+++|++|++++|.+. .++  ..++.+++|+.|++.++      ...       ...+..+++|+.||-..+
T Consensus       112 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I  184 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPV  184 (198)
T ss_dssp             HHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGG
T ss_pred             cccccccccccccchhc-cccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccC
Confidence            89999999999999776 333  35889999999999871      111       112577888888875443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.5e-10  Score=92.37  Aligned_cols=157  Identities=18%  Similarity=0.138  Sum_probs=104.4

Q ss_pred             CCCceeEEEEEecCCcc--cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccc---------
Q 043587           94 LDEKVRHLMLIIGEGAI--FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHS---------  162 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~---------  162 (285)
                      ...+++.+.+..+....  .+..+.+++.++++.+..+..     ...+.+..|.++++|++|++.++.+.         
T Consensus        51 ~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~-----l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~  125 (242)
T d1xwdc1          51 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-----LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH  125 (242)
T ss_dssp             TCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTT-----CCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTC
T ss_pred             ccchhhhhhhccccccceeecccccccccccccccccccc-----ccccccccccccccccccccchhhhcccccccccc
Confidence            45678888888776654  234566777777777654321     22234555677788888887744221         


Q ss_pred             -----------cccCCCccc-cccccc-CCCceEecccccccccchhhhcCCCccEEe-cCCCCCcCcCccc-ccccCCC
Q 043587          163 -----------RSSLTPEIP-RNIEKL-VHLRYLSLSFQHIEKLPETLCELYNLETLD-ISGCFDLEELPKG-IGKLVNM  227 (285)
Q Consensus       163 -----------~~~~~~~~p-~~i~~l-~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~-l~~~~~~~~lp~~-l~~l~~L  227 (285)
                                 .+. ...++ ..+..+ ..+++|++++++++.++.......+++.+. +.+|+ ++.+|.. +.++++|
T Consensus       126 ~l~~l~~~~~~n~~-l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~-l~~l~~~~f~~l~~L  203 (242)
T d1xwdc1         126 SLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN-LEELPNDVFHGASGP  203 (242)
T ss_dssp             BSSCEEEEEESCTT-CCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT-CCCCCTTTTTTSCCC
T ss_pred             cccccccccccccc-cccccccccccccccceeeecccccccccccccccchhhhccccccccc-cccccHHHhcCCCCC
Confidence                       111 12221 233333 368889999999998888777777776665 45555 8888765 6889999


Q ss_pred             ceeecCCCCCCcccC-CCCCCCCcCCcccccc
Q 043587          228 KHLLNSRTSSVRYMP-VGIGRLTGLRTLGEFT  258 (285)
Q Consensus       228 ~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~  258 (285)
                      ++|++++|++. .+| ..+.++++|+.+++..
T Consensus       204 ~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         204 VILDISRTRIH-SLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             SEEECTTSCCC-CCCSSSCTTCCEEESSSEES
T ss_pred             CEEECCCCcCC-ccCHHHHcCCcccccCcCCC
Confidence            99999999877 554 4578888888877654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=5.5e-11  Score=88.58  Aligned_cols=63  Identities=19%  Similarity=0.174  Sum_probs=28.4

Q ss_pred             cccccCCCceEecccccccccc-hhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCC
Q 043587          173 NIEKLVHLRYLSLSFQHIEKLP-ETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTS  236 (285)
Q Consensus       173 ~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~  236 (285)
                      .|..+++|+.|++++|+++.++ ..+..+++|++|+|++|+ ++.+|..+....+|++|++++|+
T Consensus        51 ~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          51 DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred             hhccccccCcceeeccccCCcccccccccccccceeccCCC-CcccChhhhccccccccccCCCc
Confidence            3444444444444444444442 234444444445554444 44444433333344455554443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.3e-10  Score=85.12  Aligned_cols=104  Identities=21%  Similarity=0.142  Sum_probs=83.0

Q ss_pred             EEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCcccccccccCC
Q 043587          100 HLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIEKLVH  179 (285)
Q Consensus       100 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~~l~~  179 (285)
                      .+.+........+..+..+++|+.|++.++.     ....+.+.+|.++++|+.|+++     +|++....|..|..+++
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~-----~l~~i~~~~f~~l~~L~~L~Ls-----~N~l~~i~~~~f~~l~~   81 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQ-----HLQHLELRDLRGLGELRNLTIV-----KSGLRFVAPDAFHFTPR   81 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCS-----SCCEECGGGSCSCCCCSEEECC-----SSCCCEECTTGGGSCSC
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCc-----cccccCchhhccccccCcceee-----ccccCCccccccccccc
Confidence            4566666666677788888999999997664     1555566678999999999999     88844444677889999


Q ss_pred             CceEecccccccccchhhhcCCCccEEecCCCCC
Q 043587          180 LRYLSLSFQHIEKLPETLCELYNLETLDISGCFD  213 (285)
Q Consensus       180 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~  213 (285)
                      |++|+|++|+++.+|..+....+|+.|++++|..
T Consensus        82 L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          82 LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             ccceeccCCCCcccChhhhccccccccccCCCcc
Confidence            9999999999999988777667899999999873

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.78  E-value=1.5e-08  Score=84.54  Aligned_cols=134  Identities=20%  Similarity=0.162  Sum_probs=87.2

Q ss_pred             CceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccccccCCCccccccc
Q 043587           96 EKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHSRSSLTPEIPRNIE  175 (285)
Q Consensus        96 ~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~p~~i~  175 (285)
                      .++++|+++.+.+..+|+.   +++|++|++++|.      ...+ |.   ...+|+.|++.     +|. ...++..  
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~------l~~l-p~---~~~~L~~L~l~-----~n~-l~~l~~l--   96 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNS------LTEL-PE---LPQSLKSLLVD-----NNN-LKALSDL--   96 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSC------CSSC-CC---CCTTCCEEECC-----SSC-CSCCCSC--
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCC------Cccc-cc---chhhhhhhhhh-----hcc-cchhhhh--
Confidence            3567788887777766643   4678888888887      3343 22   24578888887     666 3344321  


Q ss_pred             ccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCCcccCCCCCCCCcCCccc
Q 043587          176 KLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSVRYMPVGIGRLTGLRTLG  255 (285)
Q Consensus       176 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  255 (285)
                       .+.|++|++++|.++.+|. ++.+++|+.|+++++. ....|..   ...+..+.+..+...  .+..++.++.++.+.
T Consensus        97 -p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~  168 (353)
T d1jl5a_          97 -PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIY  168 (353)
T ss_dssp             -CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEE
T ss_pred             -ccccccccccccccccccc-hhhhccceeecccccc-ccccccc---cccccchhhcccccc--ccccccccccceecc
Confidence             1358888888888888874 5778888888888876 5555543   345566666555332  234566777777777


Q ss_pred             ccc
Q 043587          256 EFT  258 (285)
Q Consensus       256 l~~  258 (285)
                      +..
T Consensus       169 l~~  171 (353)
T d1jl5a_         169 ADN  171 (353)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.76  E-value=2.7e-08  Score=82.84  Aligned_cols=120  Identities=18%  Similarity=0.248  Sum_probs=88.9

Q ss_pred             CCCCceeEEEEEecCCcccccchhccccccEEeecCCCCCCCCchhhHHHHHHhcC-CccceeeecccccccccCCCccc
Q 043587           93 SLDEKVRHLMLIIGEGAIFPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFREL-TSLRALDFCESYHSRSSLTPEIP  171 (285)
Q Consensus        93 ~~~~~l~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~p  171 (285)
                      ...++++.|.++.+.+..+|..   +.+|+.|++.+|.      ...+     ..+ +.|++|+++     +|. +..+|
T Consensus        55 ~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~------l~~l-----~~lp~~L~~L~L~-----~n~-l~~lp  114 (353)
T d1jl5a_          55 ELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN------LKAL-----SDLPPLLEYLGVS-----NNQ-LEKLP  114 (353)
T ss_dssp             SCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC------CSCC-----CSCCTTCCEEECC-----SSC-CSSCC
T ss_pred             CCCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcc------cchh-----hhhcccccccccc-----ccc-ccccc
Confidence            4567899999999998877754   4688999999987      2222     222 469999999     888 56677


Q ss_pred             ccccccCCCceEecccccccccchhhhcCCCccEEecCCCCCcCcCcccccccCCCceeecCCCCCC
Q 043587          172 RNIEKLVHLRYLSLSFQHIEKLPETLCELYNLETLDISGCFDLEELPKGIGKLVNMKHLLNSRTSSV  238 (285)
Q Consensus       172 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~  238 (285)
                      . ++.+.+|++|+++++.+...|...   ..+..+.+..+. . ..+..++.++.++.+.+..|...
T Consensus       115 ~-~~~l~~L~~L~l~~~~~~~~~~~~---~~l~~l~~~~~~-~-~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         115 E-LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-L-EELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             C-CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-C-SSCCCCTTCTTCCEEECCSSCCS
T ss_pred             c-hhhhccceeecccccccccccccc---ccccchhhcccc-c-cccccccccccceeccccccccc
Confidence            4 678999999999999988777543   456667776654 2 22346778888999998877544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.67  E-value=4.4e-09  Score=88.15  Aligned_cols=177  Identities=14%  Similarity=0.073  Sum_probs=103.4

Q ss_pred             CCceeEEEEEecCCcc-----cccchhccccccEEeecCCCCCCCCchhhHH------------HHHHhcCCccceeeec
Q 043587           95 DEKVRHLMLIIGEGAI-----FPVSTRRIKRMRSLLIDGGRSDHSSLNGEIL------------EELFRELTSLRALDFC  157 (285)
Q Consensus        95 ~~~l~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~------------~~~~~~~~~L~~L~L~  157 (285)
                      ..+++.+++..+.+..     +...+...++|+.|.+++|.     +.....            .......+.|+.++++
T Consensus        92 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-----l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~  166 (344)
T d2ca6a1          92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-----LGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  166 (344)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-----CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             CCCcccccccccccccccccchhhhhcccccchheeccccc-----ccccccccccccccccccccccccCcccceeecc
Confidence            4467777777765543     33344566778888888775     221100            0111345677778877


Q ss_pred             ccccccccCCC----cccccccccCCCceEecccccccc------cchhhhcCCCccEEecCCCCCcC----cCcccccc
Q 043587          158 ESYHSRSSLTP----EIPRNIEKLVHLRYLSLSFQHIEK------LPETLCELYNLETLDISGCFDLE----ELPKGIGK  223 (285)
Q Consensus       158 ~~~~~~~~~~~----~~p~~i~~l~~L~~L~l~~~~l~~------lp~~i~~l~~L~~L~l~~~~~~~----~lp~~l~~  223 (285)
                           +|.+..    .+...+.....|++|++++|.+..      +...+...++|+.|++++|....    .+...+..
T Consensus       167 -----~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~  241 (344)
T d2ca6a1         167 -----RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS  241 (344)
T ss_dssp             -----SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred             -----cccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccc
Confidence                 555322    133445566778888888887652      22345667788888888876322    13445667


Q ss_pred             cCCCceeecCCCCCCcc----cCCCCC--CCCcCCcccccc---cc----CCcccc-ccCCcCCCceecccC
Q 043587          224 LVNMKHLLNSRTSSVRY----MPVGIG--RLTGLRTLGEFT---KA----CRLESL-KNLEHLQICGIRRLG  281 (285)
Q Consensus       224 l~~L~~L~l~~~~~~~~----~p~~~~--~l~~L~~L~l~~---~~----~~~~~l-~~l~~L~~L~i~~~~  281 (285)
                      .++|++|++++|.+...    +-..+.  ....|++|++++   ..    .....+ .+++.|+.|++++..
T Consensus       242 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            78888888888876542    111122  235678888876   11    122333 256678888877643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.58  E-value=7.4e-09  Score=86.77  Aligned_cols=180  Identities=13%  Similarity=0.118  Sum_probs=107.7

Q ss_pred             CCCceeEEEEEecCCcc-----------cccchhccccccEEeecCCCCCCCCchhhHHHHHHhcCCccceeeecccccc
Q 043587           94 LDEKVRHLMLIIGEGAI-----------FPVSTRRIKRMRSLLIDGGRSDHSSLNGEILEELFRELTSLRALDFCESYHS  162 (285)
Q Consensus        94 ~~~~l~~L~l~~~~~~~-----------~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~  162 (285)
                      ..+.++.+.+.......           +...+..+++|+.|++++|...... ... ....+...++|+.|+++     
T Consensus        57 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~-~~~-l~~~l~~~~~L~~L~l~-----  129 (344)
T d2ca6a1          57 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA-QEP-LIDFLSKHTPLEHLYLH-----  129 (344)
T ss_dssp             TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT-HHH-HHHHHHHCTTCCEEECC-----
T ss_pred             hCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc-ccc-hhhhhcccccchheecc-----
Confidence            35677777776543221           2233445677888888877632111 112 24446677888888887     


Q ss_pred             cccCCCccc----cc---------ccccCCCceEeccccccc-----ccchhhhcCCCccEEecCCCCCcCc------Cc
Q 043587          163 RSSLTPEIP----RN---------IEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDISGCFDLEE------LP  218 (285)
Q Consensus       163 ~~~~~~~~p----~~---------i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~------lp  218 (285)
                      +|.+...-.    ..         ....+.|+++.++++.++     .+...+...+.|+.|++++|. ++.      +.
T Consensus       130 ~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~  208 (344)
T d2ca6a1         130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLL  208 (344)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccc-ccccccccchh
Confidence            665321100    11         123556788888887754     334455667888899988887 332      23


Q ss_pred             ccccccCCCceeecCCCCCCcc----cCCCCCCCCcCCcccccc---ccC----Ccccccc--CCcCCCceecccC
Q 043587          219 KGIGKLVNMKHLLNSRTSSVRY----MPVGIGRLTGLRTLGEFT---KAC----RLESLKN--LEHLQICGIRRLG  281 (285)
Q Consensus       219 ~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~---~~~----~~~~l~~--l~~L~~L~i~~~~  281 (285)
                      ..+...++|++|++++|.+...    +...+..+++|++|++++   ...    ....+..  .+.|+.|+++++.
T Consensus       209 ~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         209 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             hhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            3466778889999988865432    334567788888888877   111    2222332  3468888888763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4.2e-09  Score=78.62  Aligned_cols=86  Identities=17%  Similarity=0.157  Sum_probs=54.2

Q ss_pred             HHHHHhcCCccceeeecccccccccCCCc--ccccccccCCCceEecccccccccch-hhhcCCCccEEecCCCCCcCcC
Q 043587          141 LEELFRELTSLRALDFCESYHSRSSLTPE--IPRNIEKLVHLRYLSLSFQHIEKLPE-TLCELYNLETLDISGCFDLEEL  217 (285)
Q Consensus       141 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~p~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~l  217 (285)
                      .+..+..+++|++|+|+     +|++...  ++..+..+++|++|++++|.++.+++ ...+..+|+.|++.+|......
T Consensus        57 l~~~~~~~~~L~~L~Ls-----~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          57 LRIIEENIPELLSLNLS-----NNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHHHHHCTTCCCCCCC-----SSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             hHHHHHhCCCCCEeeCC-----CccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCc
Confidence            35555678888888888     7773332  23445667888888888888777764 2223456778888887733322


Q ss_pred             cc-------cccccCCCceee
Q 043587          218 PK-------GIGKLVNMKHLL  231 (285)
Q Consensus       218 p~-------~l~~l~~L~~L~  231 (285)
                      ..       -+..+|+|+.||
T Consensus       132 ~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         132 RDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSHHHHHHHHHTTSTTCCEET
T ss_pred             ccchhHHHHHHHHCCCCCEEC
Confidence            21       134567777775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.1e-07  Score=80.01  Aligned_cols=106  Identities=17%  Similarity=0.191  Sum_probs=65.3

Q ss_pred             ceeEEEEEecCCcc--cccchhccccccEEeecCCCCCCCCchhh---HHHHHHhcCCccceeeecccccccccCCCc--
Q 043587           97 KVRHLMLIIGEGAI--FPVSTRRIKRMRSLLIDGGRSDHSSLNGE---ILEELFRELTSLRALDFCESYHSRSSLTPE--  169 (285)
Q Consensus        97 ~l~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~l~~~---~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--  169 (285)
                      +++.|+++++.+..  +...+..++++++|.+.+|.     +...   .....+..+++|+.|+|+     +|.+...  
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-----i~~~~~~~l~~~L~~~~~L~~LdLs-----~N~i~~~~~   72 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-----LTEARCKDISSALRVNPALAELNLR-----SNELGDVGV   72 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-----CCHHHHHHHHHHHHTCTTCCEEECT-----TCCCHHHHH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCC-----CCHHHHHHHHHHHhcCCCCCEEECc-----CCcCChHHH
Confidence            56777777777665  34556677777888887776     2221   124446677778888887     6653211  


Q ss_pred             --cccccc-ccCCCceEecccccccc-----cchhhhcCCCccEEecCCCC
Q 043587          170 --IPRNIE-KLVHLRYLSLSFQHIEK-----LPETLCELYNLETLDISGCF  212 (285)
Q Consensus       170 --~p~~i~-~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~  212 (285)
                        +...+. ....|++|++++|.++.     ++..+..+++|++|++++|.
T Consensus        73 ~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          73 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence              222222 12357778887777652     34455667777888877776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.7e-07  Score=69.61  Aligned_cols=91  Identities=20%  Similarity=0.120  Sum_probs=67.7

Q ss_pred             CCcccccccccCCCceEecccccccccc---hhhhcCCCccEEecCCCCCcCcCcc-cccccCCCceeecCCCCCCcccC
Q 043587          167 TPEIPRNIEKLVHLRYLSLSFQHIEKLP---ETLCELYNLETLDISGCFDLEELPK-GIGKLVNMKHLLNSRTSSVRYMP  242 (285)
Q Consensus       167 ~~~~p~~i~~l~~L~~L~l~~~~l~~lp---~~i~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p  242 (285)
                      ...++.....++.|++|++++|+++.++   ..+..+++|+.|++++|. ++.+++ ......+|+.|++++|++.....
T Consensus        54 ~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          54 AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcc
Confidence            3334444457899999999999988664   456789999999999998 777764 23344579999999998875433


Q ss_pred             C-------CCCCCCcCCcccccc
Q 043587          243 V-------GIGRLTGLRTLGEFT  258 (285)
Q Consensus       243 ~-------~~~~l~~L~~L~l~~  258 (285)
                      .       .+..+++|+.|+...
T Consensus       133 ~~~~y~~~i~~~~P~L~~LDg~~  155 (162)
T d1koha1         133 DQSTYISAIRERFPKLLRLDGHE  155 (162)
T ss_dssp             SHHHHHHHHHTTSTTCCEETTEE
T ss_pred             cchhHHHHHHHHCCCCCEECcCC
Confidence            2       256789999988543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=7.3e-08  Score=82.93  Aligned_cols=61  Identities=20%  Similarity=0.110  Sum_probs=28.0

Q ss_pred             cCCCceEeccccccc-----ccchhhh-cCCCccEEecCCCCCcCc-----CcccccccCCCceeecCCCCCC
Q 043587          177 LVHLRYLSLSFQHIE-----KLPETLC-ELYNLETLDISGCFDLEE-----LPKGIGKLVNMKHLLNSRTSSV  238 (285)
Q Consensus       177 l~~L~~L~l~~~~l~-----~lp~~i~-~l~~L~~L~l~~~~~~~~-----lp~~l~~l~~L~~L~l~~~~~~  238 (285)
                      ..+|++|+|++|.++     .+++.+. ..+.|++|++++|. ++.     ++..+...++|++|++++|++.
T Consensus       339 ~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            345555555555543     1223332 23445555555554 221     2233444455555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.64  E-value=2.7e-05  Score=57.56  Aligned_cols=109  Identities=11%  Similarity=0.073  Sum_probs=61.3

Q ss_pred             ccccccEEeecCCCCCCCCchhhH---HHHHHhcCCccceeeecccccccccCCCc----ccccccccCCCceEeccccc
Q 043587          117 RIKRMRSLLIDGGRSDHSSLNGEI---LEELFRELTSLRALDFCESYHSRSSLTPE----IPRNIEKLVHLRYLSLSFQH  189 (285)
Q Consensus       117 ~l~~L~~L~l~~~~~~~~~l~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~~~~----~p~~i~~l~~L~~L~l~~~~  189 (285)
                      +.+.|+.|+++++..    +..+.   .-..+...+.|+.|+++     +|.+...    +...+...+.|++|++++|.
T Consensus        13 n~~~L~~L~L~~~~~----i~~~~~~~l~~~L~~n~~L~~L~Ls-----~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          13 DDTDLKEVNINNMKR----VSKERIRSLIEAACNSKHIEKFSLA-----NTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             TCSSCCEEECTTCCS----SCHHHHHHHHHHHTTCSCCCEEECT-----TSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCCCCcEEEeCCCCC----CCHHHHHHHHHHHhhCCccceeecc-----ccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            446777777765321    12221   12335566778888887     6653322    23344455677888888777


Q ss_pred             ccc-----cchhhhcCCCccEEecCCCCCcCc--------CcccccccCCCceeecCCC
Q 043587          190 IEK-----LPETLCELYNLETLDISGCFDLEE--------LPKGIGKLVNMKHLLNSRT  235 (285)
Q Consensus       190 l~~-----lp~~i~~l~~L~~L~l~~~~~~~~--------lp~~l~~l~~L~~L~l~~~  235 (285)
                      ++.     +-..+..-++|+.|++++|. ...        +...+..-++|+.|+++.+
T Consensus        84 i~~~g~~~l~~aL~~n~sL~~L~l~~n~-~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          84 LTPELLARLLRSTLVTQSIVEFKADNQR-QSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCS-SCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             cchHHHHHHHHHHHhCCcCCEEECCCCc-CCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            652     23345555677888887764 221        2233444566777776554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.52  E-value=3.8e-05  Score=56.69  Aligned_cols=113  Identities=16%  Similarity=0.120  Sum_probs=74.7

Q ss_pred             HHHHHhcCCccceeeecccccccccCCCc-----ccccccccCCCceEeccccccc-----ccchhhhcCCCccEEecCC
Q 043587          141 LEELFRELTSLRALDFCESYHSRSSLTPE-----IPRNIEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDISG  210 (285)
Q Consensus       141 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-----~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~  210 (285)
                      ......+.+.|+.|+|+     +++-++.     +-..+....+|++|++++|.+.     .+...+...+.|+.|++++
T Consensus         7 l~~l~~n~~~L~~L~L~-----~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~   81 (167)
T d1pgva_           7 INRLREDDTDLKEVNIN-----NMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES   81 (167)
T ss_dssp             HHHHHTTCSSCCEEECT-----TCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHhCCCCCcEEEeC-----CCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeeh
Confidence            34545677999999998     5431322     3345666788999999999876     3334566678999999999


Q ss_pred             CCCcCc----CcccccccCCCceeecCCCCCCc-------ccCCCCCCCCcCCcccccc
Q 043587          211 CFDLEE----LPKGIGKLVNMKHLLNSRTSSVR-------YMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       211 ~~~~~~----lp~~l~~l~~L~~L~l~~~~~~~-------~~p~~~~~l~~L~~L~l~~  258 (285)
                      |.....    +-..+..-++|++|++++|....       .+...+..-++|++|++..
T Consensus        82 n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          82 NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             hhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            973322    22345566789999998874331       1223344556677776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.08  E-value=0.00016  Score=52.98  Aligned_cols=59  Identities=17%  Similarity=0.182  Sum_probs=27.2

Q ss_pred             HhcCCccceeeecccccccccCCCc----ccccccccCCCceEeccccccc-----ccchhhhcCCCccEEec
Q 043587          145 FRELTSLRALDFCESYHSRSSLTPE----IPRNIEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDI  208 (285)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~----~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l  208 (285)
                      +...++|+.|+++     +|.+...    +...+.....+++++++++.+.     .+...+...++|+.+++
T Consensus        42 l~~n~~L~~L~Ls-----~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          42 LKTNTYVKKFSIV-----GTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI  109 (166)
T ss_dssp             HTTCCSCCEEECT-----TSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             HhcCCccCeeecc-----CCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEee
Confidence            3445556666665     4442221    1223334455555555555543     22234444455555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.04  E-value=0.00032  Score=51.32  Aligned_cols=115  Identities=13%  Similarity=0.107  Sum_probs=64.8

Q ss_pred             hHHHHHHhcCCccceeeecccccccc-cCCCc----ccccccccCCCceEeccccccc-----ccchhhhcCCCccEEec
Q 043587          139 EILEELFRELTSLRALDFCESYHSRS-SLTPE----IPRNIEKLVHLRYLSLSFQHIE-----KLPETLCELYNLETLDI  208 (285)
Q Consensus       139 ~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~----~p~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l  208 (285)
                      ++......+.+.|+.|+++     ++ .+...    +-..+...++|+.|++++|.++     .+-..+...++++.+++
T Consensus         7 ~~l~~~~~~~~~L~~L~L~-----~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l   81 (166)
T d1io0a_           7 ETLKRIQNNDPDLEEVNLN-----NIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV   81 (166)
T ss_dssp             HHHHHHHTTCTTCCEEECT-----TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHHhcCCCCcEEEcC-----CCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhh
Confidence            3345555666777777777     42 22211    2334556677888888887755     23334555677788888


Q ss_pred             CCCCCcCc----CcccccccCCCceeecC--CCCCCc----ccCCCCCCCCcCCcccccc
Q 043587          209 SGCFDLEE----LPKGIGKLVNMKHLLNS--RTSSVR----YMPVGIGRLTGLRTLGEFT  258 (285)
Q Consensus       209 ~~~~~~~~----lp~~l~~l~~L~~L~l~--~~~~~~----~~p~~~~~l~~L~~L~l~~  258 (285)
                      ++|.....    +...+...++|+.+++.  .|.+..    .+...+...++|++|++..
T Consensus        82 ~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          82 ESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             CSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             ccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            77763222    22345566777765554  333321    1233455666777777654