Citrus Sinensis ID: 043593

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MIQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIKIKLLDIQSLNIKFKILDIQSLNIKL
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHcccHHHHHHHHHHHccccHHHHccccccccHHHHHHHHcccHHHHHHHHHccccccHHHHHccccccccccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccEEccccccEEEEEEcccHHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEHHHccccc
Coil and Loop (DISEMBL)
miqaakitnsedtALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIKIKLLDIQSLNIKFKILDIQSLNIKL
Flexible Loop (DISEMBL)
miqaakitnsedtalhiAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIKIKLLdiqslnikfkildiqslnikl
Low Complexity Region (SEG)
MIQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTalhlaaalgnaaFVKIGCLDIQSLNIKIKLLDIQSLNIKFKILDIQSLNIKL
Disordered region (IsUnstruct)
**************LHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIKIKLLDIQSLNIKFKILDIQSL****
Disordered Region (DISOPRED)
**Q*AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIKIKLLDIQSLNIKFKILDIQSLNI**
Disordered Region (DISEMBL)
MIQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIKIKLLDIQSLNIKFKILDIQSLNIKL
Disordered Region (DISPRO)
***AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIKIKLLDIQSLNIKFKILDIQSLNIKL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIKIKLLDIQSLNIKFKILDIQSLNIKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	yes	no	0.553	0.108	0.413	4e-05

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 11 EDTALHIAVSDGRSDIVLKLV-ESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          +DT LH AV +G++D++L+++ E  G     +L  QN+ G TAL++AA  G    VKI
Sbjct: 17 DDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTDMVKI 74

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
255554112	786	ankyrin repeat-containing protein, putat	0.592	0.077	0.622	1e-13
147792435	281	hypothetical protein VITISV_043182 [Viti	0.563	0.206	0.586	7e-12
359484881	741	PREDICTED: uncharacterized protein LOC10	0.563	0.078	0.586	1e-11
359479725	702	PREDICTED: uncharacterized protein LOC10	0.592	0.086	0.540	4e-11
296085250	635	unnamed protein product [Vitis vinifera]	0.592	0.096	0.540	4e-11
147855983	1513	hypothetical protein VITISV_044165 [Viti	0.572	0.038	0.540	6e-11
359484887	673	PREDICTED: uncharacterized protein LOC10	0.611	0.093	0.573	7e-11
359479723	768	PREDICTED: uncharacterized protein LOC10	0.592	0.079	0.524	2e-10
296085246	881	unnamed protein product [Vitis vinifera]	0.592	0.069	0.524	2e-10
296085248	610	unnamed protein product [Vitis vinifera]	0.572	0.096	0.524	2e-10

>gi|255554112|ref|XP_002518096.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223542692|gb|EEF44229.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/61 (62%), Positives = 49/61 (80%)

Query: 2  IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN 61
          ++  +IT S +TA+HIAVSDGR+++V KLVE  G NAS VL ++NEKGNT LHLAA LG+
Sbjct: 28 LEDGRITRSRNTAVHIAVSDGRTEVVSKLVEIFGDNASRVLHIKNEKGNTPLHLAAKLGD 87

Query: 62 A 62
          A
Sbjct: 88 A 88

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792435|emb|CAN65764.1| hypothetical protein VITISV_043182 [Vitis vinifera]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 46/58 (79%)

Query: 4  AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN 61
          + +IT S+DTALH+AVSDGR +I+  LV+ +G  A + LK++N+ GNT LHLAAALGN
Sbjct: 33 SVRITTSKDTALHLAVSDGREEILEHLVQVLGDKAKDALKIKNDHGNTPLHLAAALGN 90

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484881|ref|XP_002270267.2| PREDICTED: uncharacterized protein LOC100245091 [Vitis vinifera]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 46/58 (79%)

Query: 4  AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN 61
          + +IT S+DTALH+AVSDGR +I+  LV+ +G  A + LK++N+ GNT LHLAAALGN
Sbjct: 20 SVRITTSKDTALHLAVSDGREEILEHLVQVLGDKAKDALKIKNDHGNTPLHLAAALGN 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479725|ref|XP_003632348.1| PREDICTED: uncharacterized protein LOC100854299 [Vitis vinifera]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 44/61 (72%)

Query: 6   KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
           K T S DTALHIAVSDGR D+V+KLV+ M      ++ ++N++GNT LHLAA++GN    
Sbjct: 42  KTTTSGDTALHIAVSDGREDVVVKLVQLMAHRNVYLINIKNDRGNTPLHLAASVGNVRMC 101

Query: 66  K 66
           K
Sbjct: 102 K 102

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085250|emb|CBI28745.3| unnamed protein product [Vitis vinifera]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 44/61 (72%)

Query: 6   KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
           K T S DTALHIAVSDGR D+V+KLV+ M      ++ ++N++GNT LHLAA++GN    
Sbjct: 192 KTTTSGDTALHIAVSDGREDVVVKLVQLMAHRNVYLINIKNDRGNTPLHLAASVGNVRMC 251

Query: 66  K 66
           K
Sbjct: 252 K 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855983|emb|CAN82817.1| hypothetical protein VITISV_044165 [Vitis vinifera]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 44/61 (72%)

Query: 6   KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
           K T S DTALHIAVSDGR D+V+KLV+ M      ++ ++N++GNT LHLAA++GN    
Sbjct: 893 KTTTSGDTALHIAVSDGREDVVVKLVQLMAHRNVYLINIKNDRGNTPLHLAASVGNVRMC 952

Query: 66  K 66
           K
Sbjct: 953 K 953

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484887|ref|XP_002269738.2| PREDICTED: uncharacterized protein LOC100262122 [Vitis vinifera]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 5/68 (7%)

Query: 2  IQAAKITNSEDTALHIAVSDGRSDIV---LKLVESMGQNASNVLKLQNEKGNTALHLAAA 58
          I  AKIT+S DTALHIAVS+G  D+V   +K+++S G+  +  LK+QNE GNT LHLAAA
Sbjct: 31 IHTAKITSSGDTALHIAVSEGSVDMVEQLIKVLDSKGRKEA--LKIQNEHGNTPLHLAAA 88

Query: 59 LGNAAFVK 66
          +GN A  K
Sbjct: 89 MGNRAMCK 96

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479723|ref|XP_003632347.1| PREDICTED: uncharacterized protein LOC100854208 [Vitis vinifera]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 6   KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
           K   S DTALHIAVSDGR D+V+KLV+ M      ++ ++N++GNT LHLAA++GN    
Sbjct: 102 KTATSGDTALHIAVSDGREDVVVKLVQLMAHRNVYLINIKNDRGNTPLHLAASVGNVRMC 161

Query: 66  K 66
           K
Sbjct: 162 K 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085246|emb|CBI28741.3| unnamed protein product [Vitis vinifera]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 6   KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
           K   S DTALHIAVSDGR D+V+KLV+ M      ++ ++N++GNT LHLAA++GN    
Sbjct: 126 KTATSGDTALHIAVSDGREDVVVKLVQLMAHRNVYLINIKNDRGNTPLHLAASVGNVRMC 185

Query: 66  K 66
           K
Sbjct: 186 K 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085248|emb|CBI28743.3| unnamed protein product [Vitis vinifera]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 43/61 (70%)

Query: 6   KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
           K   S DTALHIAVSDGR D+V+KLV+ M      ++ ++N++GNT LHLAA++GN    
Sbjct: 178 KTATSGDTALHIAVSDGREDVVVKLVQLMAHRNVYLINIKNDRGNTPLHLAASVGNVRMC 237

Query: 66  K 66
           K
Sbjct: 238 K 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017075001 SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (695 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          T LH+A  +G  +IV  L+E         +  +++ GNT LHLAA  GN   VK+
Sbjct: 42 TPLHLAAKNGHLEIVKLLLEKGA-----DVNARDKDGNTPLHLAARNGNLDVVKL 91

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          T LH+A S+G  ++V  L+E+           ++  G T LHLAA  G+   VK+
Sbjct: 9  TPLHLAASNGHLEVVKLLLENGADVN-----AKDNDGRTPLHLAAKNGHLEIVKL 58

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 38.0 bits (89), Expect = 7e-05
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 9  NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             DTALH+A  +G  +IV  L+E         +  +++ GNTALHLAA  GN   VK+
Sbjct: 26 GDTDTALHLAARNGNLEIVKLLLE-----HGADVNAKDKDGNTALHLAARNGNLEIVKL 79

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 6   KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
                 +T LH+A  +G  D+V  L++         +  +++ G T LHLAA  G+   V
Sbjct: 68  ARDKDGNTPLHLAARNGNLDVVKLLLKH-----GADVNARDKDGRTPLHLAAKNGHLEVV 122

Query: 66  KI 67
           K+
Sbjct: 123 KL 124

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 34.9 bits (81), Expect = 5e-04
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 11 EDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVK 66
            TALH A   GR ++V  L+E  G + +      +E GNTALH+AA  GN   +K
Sbjct: 1  GRTALHKAAISGRLELVKYLLE-KGVDIN----RTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 32.7 bits (75), Expect = 0.004
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLA 56
          T LH+A   G  ++V  L++         L L++  G TAL LA
Sbjct: 18 TPLHLAAKYGALELVQWLLKPGVD-----LNLRDSDGLTALDLA 56

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.83
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.78
PHA02791	284	ankyrin-like protein; Provisional	99.77
PHA02743	166	Viral ankyrin protein; Provisional	99.73
PHA02741	169	hypothetical protein; Provisional	99.73
PHA02791	284	ankyrin-like protein; Provisional	99.7
PHA02875	413	ankyrin repeat protein; Provisional	99.69
PHA02874	434	ankyrin repeat protein; Provisional	99.68
KOG0510	929	consensus Ankyrin repeat protein [General function	99.68
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.67
PHA02741	169	hypothetical protein; Provisional	99.67
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.67
PHA02878	477	ankyrin repeat protein; Provisional	99.67
PHA02875	413	ankyrin repeat protein; Provisional	99.66
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.66
PHA02736	154	Viral ankyrin protein; Provisional	99.66
PHA03095	471	ankyrin-like protein; Provisional	99.64
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.64
PHA02884	300	ankyrin repeat protein; Provisional	99.63
PHA02946	446	ankyin-like protein; Provisional	99.63
PHA02946	446	ankyin-like protein; Provisional	99.62
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.62
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.62
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.61
PHA02730	672	ankyrin-like protein; Provisional	99.6
PHA03100	480	ankyrin repeat protein; Provisional	99.6
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.6
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.59
KOG0514	452	consensus Ankyrin repeat protein [General function	99.59
PHA03095	471	ankyrin-like protein; Provisional	99.59
PHA02878	477	ankyrin repeat protein; Provisional	99.59
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.59
PHA02874	434	ankyrin repeat protein; Provisional	99.58
PHA02743	166	Viral ankyrin protein; Provisional	99.57
PHA02884	300	ankyrin repeat protein; Provisional	99.56
PHA03100	480	ankyrin repeat protein; Provisional	99.55
KOG0508	615	consensus Ankyrin repeat protein [General function	99.54
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.54
PHA02798	489	ankyrin-like protein; Provisional	99.54
KOG0510	929	consensus Ankyrin repeat protein [General function	99.54
PHA02859	209	ankyrin repeat protein; Provisional	99.54
PHA02876	682	ankyrin repeat protein; Provisional	99.53
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.53
PHA02859	209	ankyrin repeat protein; Provisional	99.51
PHA02795	437	ankyrin-like protein; Provisional	99.51
KOG0508	615	consensus Ankyrin repeat protein [General function	99.51
KOG0514	452	consensus Ankyrin repeat protein [General function	99.5
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.5
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.5
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.48
PHA02876	682	ankyrin repeat protein; Provisional	99.48
PHA02989	494	ankyrin repeat protein; Provisional	99.48
PHA02798	489	ankyrin-like protein; Provisional	99.47
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.46
PHA02989	494	ankyrin repeat protein; Provisional	99.45
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.45
PHA02917	661	ankyrin-like protein; Provisional	99.44
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.42
PHA02917	661	ankyrin-like protein; Provisional	99.4
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.39
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.38
PHA02736	154	Viral ankyrin protein; Provisional	99.36
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
PHA02795	437	ankyrin-like protein; Provisional	99.33
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.33
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.31
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.31
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.31
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.29
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.29
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.27
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.26
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.24
PHA02730	672	ankyrin-like protein; Provisional	99.23
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.21
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.18
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.18
PHA02792	631	ankyrin-like protein; Provisional	99.13
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.12
PF13606	30	Ank_3: Ankyrin repeat	99.1
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.08
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.07
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.04
PHA02792	631	ankyrin-like protein; Provisional	99.03
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.0
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.99
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.94
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.93
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.92
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.85
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.76
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.73
KOG0522	560	consensus Ankyrin repeat protein [General function	98.73
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.64
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.62
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.62
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.58
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.54
PF13606	30	Ank_3: Ankyrin repeat	98.48
KOG0522	560	consensus Ankyrin repeat protein [General function	98.43
KOG2384	223	consensus Major histocompatibility complex protein	98.41
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.24
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.22
KOG0511	516	consensus Ankyrin repeat protein [General function	98.09
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.07
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.65
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.6
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.43
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.41
KOG2384	223	consensus Major histocompatibility complex protein	97.31
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.3
KOG2505	591	consensus Ankyrin repeat protein [General function	97.09
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	96.83
KOG0511	516	consensus Ankyrin repeat protein [General function	96.56
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.37
KOG0521	785	consensus Putative GTPase activating proteins (GAP	96.06
KOG2505	591	consensus Ankyrin repeat protein [General function	95.93
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	95.36
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	86.11
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	80.98

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=1.5e-20  Score=109.00  Aligned_cols=89  Identities=24%  Similarity=0.287  Sum_probs=54.5

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcccc----CCc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNI----KIK   80 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~~----~~t   80 (103)
                      +..|..||||||.||..|+.++++.|+.+.+.    +++..+..|.|+||+|+..|+.+++++|++.++..+.    +.|
T Consensus        66 ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~a----dvna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qt  141 (226)
T KOG4412|consen   66 DDKDDAGWTPLHIAASNGNDEVVKELLNRSGA----DVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQT  141 (226)
T ss_pred             CCccccCCchhhhhhhcCcHHHHHHHhcCCCC----CcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCc
Confidence            34466666666666666666666666666322    5666666666666666666666666666655544432    346


Q ss_pred             HHHHHHhcCchhhhHhh
Q 043593           81 LLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~   97 (103)
                      |||-|+.-|+.+++++|
T Consensus       142 plHRAAavGklkvie~L  158 (226)
T KOG4412|consen  142 PLHRAAAVGKLKVIEYL  158 (226)
T ss_pred             hhHHHHhccchhhHHHH
Confidence            66666666666666665

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=5.9e-19  Score=102.46  Aligned_cols=91  Identities=23%  Similarity=0.282  Sum_probs=82.1

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      |++.+.+..|.|+||+|+..|+.++.++|++.|.     .++.+|..|.||||-|+.-|..+++++|+..++..    .+
T Consensus        97 advna~tn~G~T~LHyAagK~r~eIaqlLle~ga-----~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~  171 (226)
T KOG4412|consen   97 ADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGA-----LIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKY  171 (226)
T ss_pred             CCcceecCCCcceehhhhcCChhhHHHHHHhcCC-----CCcccccccCchhHHHHhccchhhHHHHHhcCCCCCccccc
Confidence            6788999999999999999999999999999997     79999999999999999999999999998766554    46


Q ss_pred             CCcHHHHHHhcCchhhhHhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~   97 (103)
                      |+||||.|...|+.++.-+|
T Consensus       172 G~TpL~~al~e~~~d~a~lL  191 (226)
T KOG4412|consen  172 GFTPLHHALAEGHPDVAVLL  191 (226)
T ss_pred             CccHHHHHHhccCchHHHHH
Confidence            68999999888888877666

>PHA02791 ankyrin-like protein; Provisional

Probab=99.77  E-value=4.1e-18  Score=106.85  Aligned_cols=91  Identities=21%  Similarity=0.212  Sum_probs=70.0

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCC-hHHHHHHHcCCHHHHhhhhhhhhcc---cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGN-TALHLAAALGNAAFVKIGCLDIQSL---NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~-tpl~~a~~~~~~~~~~~l~~~~~~~---~~   77 (103)
                      |+.+..|..|+||||+|+..|+.+++++|++.+.     +++.++..|+ ||||+|+..|+.+++++|+......   ..
T Consensus        85 advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~ga-----din~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~  159 (284)
T PHA02791         85 MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW-----RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI  159 (284)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-----CcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccccccc
Confidence            3456678888888888888888888888888887     6777777764 7888888888888888876543221   23


Q ss_pred             CCcHHHHHHhcCchhhhHhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~   97 (103)
                      +.||||+|+..|+.+++++|
T Consensus       160 g~TpLh~Aa~~g~~eiv~lL  179 (284)
T PHA02791        160 LLSCIHITIKNGHVDMMILL  179 (284)
T ss_pred             CccHHHHHHHcCCHHHHHHH
Confidence            57888888888888888877

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.73  E-value=2.5e-17  Score=96.34  Aligned_cols=92  Identities=18%  Similarity=0.165  Sum_probs=76.8

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHH---HHHHHHhcCcCchhhhcccc-cCCChHHHHHHHcCCHHHHhhhhh-hhhcc---
Q 043593            4 AAKITNSEDTALHIAVSDGRSDI---VLKLVESMGQNASNVLKLQN-EKGNTALHLAAALGNAAFVKIGCL-DIQSL---   75 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~---~~~Ll~~~~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~-~~~~~---   75 (103)
                      ....|..|+||||+|+..|+.+.   +++|++.|.     +++.++ ..|.||||+|+..++.+++++++. .+...   
T Consensus        50 ~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Ga-----din~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~  124 (166)
T PHA02743         50 LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGA-----DINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAI  124 (166)
T ss_pred             hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCC-----CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCc
Confidence            34578999999999999988654   789999997     889888 589999999999999999998874 33332   


Q ss_pred             -ccCCcHHHHHHhcCchhhhHhhhhh
Q 043593           76 -NIKIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        76 -~~~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                       ..+.||||+|+..++.+++++|-.+
T Consensus       125 d~~g~tpL~~A~~~~~~~iv~~Ll~~  150 (166)
T PHA02743        125 NYQHETAYHIAYKMRDRRMMEILRAN  150 (166)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence             4567999999999999999998543

>PHA02741 hypothetical protein; Provisional

Probab=99.73  E-value=4.7e-17  Score=95.40  Aligned_cols=93  Identities=20%  Similarity=0.235  Sum_probs=79.2

Q ss_pred             cccccCCCCCCcHHHHHHHcCC----HHHHHHHHHhcCcCchhhhccccc-CCChHHHHHHHcCCHHHHhhhhh-hhhcc
Q 043593            2 IQAAKITNSEDTALHIAVSDGR----SDIVLKLVESMGQNASNVLKLQNE-KGNTALHLAAALGNAAFVKIGCL-DIQSL   75 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~-~g~tpl~~a~~~~~~~~~~~l~~-~~~~~   75 (103)
                      +.....|..|.||||+|+..|+    .+++++|+..+.     +++.++. .|.||||+|+..++.+++++|+. .+...
T Consensus        51 a~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga-----din~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~  125 (169)
T PHA02741         51 AALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGA-----DINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL  125 (169)
T ss_pred             hhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCC-----CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence            3456789999999999999999    588899999987     7888885 89999999999999999998775 33332


Q ss_pred             ----ccCCcHHHHHHhcCchhhhHhhhh
Q 043593           76 ----NIKIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        76 ----~~~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                          ..+.|||++|...++.+++++|..
T Consensus       126 ~~~n~~g~tpL~~A~~~~~~~iv~~L~~  153 (169)
T PHA02741        126 HFCNADNKSPFELAIDNEDVAMMQILRE  153 (169)
T ss_pred             CcCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence                356799999999999999999854

>PHA02791 ankyrin-like protein; Provisional

Probab=99.70  E-value=1.4e-16  Score=99.98  Aligned_cols=84  Identities=19%  Similarity=0.145  Sum_probs=38.4

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc----cccCCcHH
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS----LNIKIKLL   82 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~----~~~~~tpl   82 (103)
                      .|.+|.||||+|+..|+.+++++|++.+.     +++..+  +.||||+|+..|+.+++++|...++.    ...|.|||
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga-----~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpL   98 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLVCTLLNAGA-----LKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTAL   98 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCcC-----CCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            44455555555555555555555555543     333322  34455555555555554444332222    12233455


Q ss_pred             HHHHhcCchhhhHhh
Q 043593           83 DIQSLNIKFKILDIQ   97 (103)
Q Consensus        83 ~~A~~~~~~~~~~~~   97 (103)
                      |+|+..|+.+++++|
T Consensus        99 h~Aa~~g~~eivk~L  113 (284)
T PHA02791         99 YYAVDSGNMQTVKLF  113 (284)
T ss_pred             HHHHHcCCHHHHHHH
Confidence            555544444444444

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.69  E-value=2.4e-16  Score=103.16  Aligned_cols=87  Identities=20%  Similarity=0.125  Sum_probs=65.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHH
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLL   82 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl   82 (103)
                      .+.+|.||||+|+..|+.+++++|++.|+     +++.++..|.||||+|+..|+.++++++...++..    ..|.|||
T Consensus        98 ~~~~g~tpL~~A~~~~~~~iv~~Ll~~ga-----d~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL  172 (413)
T PHA02875         98 FYKDGMTPLHLATILKKLDIMKLLIARGA-----DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPL  172 (413)
T ss_pred             ccCCCCCHHHHHHHhCCHHHHHHHHhCCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            45667888888888888888888888876     67777778888888888888888887776554432    3456888


Q ss_pred             HHHHhcCchhhhHhhh
Q 043593           83 DIQSLNIKFKILDIQS   98 (103)
Q Consensus        83 ~~A~~~~~~~~~~~~~   98 (103)
                      |+|+..|+.+++++|-
T Consensus       173 ~~A~~~g~~eiv~~Ll  188 (413)
T PHA02875        173 IIAMAKGDIAICKMLL  188 (413)
T ss_pred             HHHHHcCCHHHHHHHH
Confidence            8888888888777763

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.68  E-value=3.4e-16  Score=103.17  Aligned_cols=91  Identities=14%  Similarity=0.096  Sum_probs=77.7

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      +....|..|.||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|+..++.+++++|...++..    ..+
T Consensus       116 d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~ga-----d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g  190 (434)
T PHA02874        116 DVNIKDAELKTFLHYAIKKGDLESIKMLFEYGA-----DVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNG  190 (434)
T ss_pred             CCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCC-----CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCC
Confidence            455678899999999999999999999999987     78889999999999999999999999887655433    455


Q ss_pred             CcHHHHHHhcCchhhhHhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~   98 (103)
                      .||||+|+..|+.+++++|-
T Consensus       191 ~tpL~~A~~~g~~~iv~~Ll  210 (434)
T PHA02874        191 ESPLHNAAEYGDYACIKLLI  210 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHH
Confidence            79999999999999998874

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.68  E-value=1.4e-16  Score=108.72  Aligned_cols=92  Identities=18%  Similarity=0.139  Sum_probs=79.5

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhh-hh-----hcccc
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCL-DI-----QSLNI   77 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~-~~-----~~~~~   77 (103)
                      +...|.+|.||||+||+.|+.+.+..|+..|.     +++.++..+.+|||.|+..|+.++++.|+. .+     ..+--
T Consensus       266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga-----~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~  340 (929)
T KOG0510|consen  266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGA-----SINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLH  340 (929)
T ss_pred             hhcccccCCchHHHHHHcCChhHHHHHHHcCC-----cccccCCCCCCchHHHHHcccHHHHHHHHhCcCcccccccccc
Confidence            34579999999999999999999999999998     899999999999999999999999988766 22     22233


Q ss_pred             CCcHHHHHHhcCchhhhHhhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      +.||||+|+..||.+++++|-.+
T Consensus       341 g~tpLHlaa~~gH~~v~qlLl~~  363 (929)
T KOG0510|consen  341 GMTPLHLAAKSGHDRVVQLLLNK  363 (929)
T ss_pred             CCCchhhhhhcCHHHHHHHHHhc
Confidence            46999999999999999998554

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.67  E-value=1.9e-16  Score=91.72  Aligned_cols=86  Identities=23%  Similarity=0.145  Sum_probs=75.1

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccc----cC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLN----IK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~----~~   78 (103)
                      +++.+|.+|.||||.|+..||.+++..|+..|+     +++.+...|+||||.||.-++.+|+..|+..++..+    -.
T Consensus        89 ~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gA-----n~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~  163 (228)
T KOG0512|consen   89 HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGA-----NKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGL  163 (228)
T ss_pred             cccccccccccHHHHHHhcCchHHHHHHHHccC-----CcccccccCccchhhhhcccchhHHHHHHhccCccccccccc
Confidence            367899999999999999999999999999998     899999999999999999999999998877665543    23


Q ss_pred             CcHHHHHHhcCchhh
Q 043593           79 IKLLDIQSLNIKFKI   93 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~   93 (103)
                      .||||+|+...+..+
T Consensus       164 ltpLhlaa~~rn~r~  178 (228)
T KOG0512|consen  164 LTPLHLAAGNRNSRD  178 (228)
T ss_pred             chhhHHhhcccchHH
Confidence            599999998776443

>PHA02741 hypothetical protein; Provisional

Probab=99.67  E-value=7.6e-16  Score=90.29  Aligned_cols=88  Identities=15%  Similarity=0.137  Sum_probs=72.9

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHh------cCcCchhhhcccccCCChHHHHHHHcCCH----HHHhhhhhhhhc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVES------MGQNASNVLKLQNEKGNTALHLAAALGNA----AFVKIGCLDIQS   74 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~------~~~~~~~~~~~~~~~g~tpl~~a~~~~~~----~~~~~l~~~~~~   74 (103)
                      ...|..|.||||+|+..|+.++++.|+..      +.     +++.+|..|.||||+|+..|+.    ++++++...++.
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga-----~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad   89 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAA-----ALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD   89 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhh-----hhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC
Confidence            35688999999999999999999988653      33     7888999999999999999984    677777654433


Q ss_pred             c-----ccCCcHHHHHHhcCchhhhHhh
Q 043593           75 L-----NIKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        75 ~-----~~~~tpl~~A~~~~~~~~~~~~   97 (103)
                      .     ..+.||||+|+..++.+++++|
T Consensus        90 in~~~~~~g~TpLh~A~~~~~~~iv~~L  117 (169)
T PHA02741         90 INAQEMLEGDTALHLAAHRRDHDLAEWL  117 (169)
T ss_pred             CCCCCcCCCCCHHHHHHHcCCHHHHHHH
Confidence            2     2567999999999999999987

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.67  E-value=2.6e-16  Score=104.82  Aligned_cols=94  Identities=22%  Similarity=0.150  Sum_probs=61.6

Q ss_pred             cccccCC-CCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhh----hccc
Q 043593            2 IQAAKIT-NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDI----QSLN   76 (103)
Q Consensus         2 a~~~~~d-~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~----~~~~   76 (103)
                      |+++..+ .-+.||||+|+++|+..++.+|+++|+     +++..|..|.+|+|+|++.++.-.+-+++...    ..++
T Consensus       102 advn~~gG~l~stPLHWAar~G~~~vv~lLlqhGA-----dpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~  176 (600)
T KOG0509|consen  102 ADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGA-----DPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDN  176 (600)
T ss_pred             CCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCC-----CCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCC
Confidence            4444455 556777777777777777777777776     67777777777777777777777766654332    3334


Q ss_pred             cCCcHHHHHHhcCchh-hhHhhhhh
Q 043593           77 IKIKLLDIQSLNIKFK-ILDIQSLN  100 (103)
Q Consensus        77 ~~~tpl~~A~~~~~~~-~~~~~~~~  100 (103)
                      .|+|||++|+..|+.. +..++..+
T Consensus       177 ~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  177 NGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             CCCCHHHHHHHhcccHHHHHHHHhc
Confidence            5567777777777766 44444443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.67  E-value=5.6e-16  Score=103.20  Aligned_cols=92  Identities=20%  Similarity=0.146  Sum_probs=75.1

Q ss_pred             cccccCCCC-CCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----c
Q 043593            2 IQAAKITNS-EDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----N   76 (103)
Q Consensus         2 a~~~~~d~~-g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~   76 (103)
                      |+....|.. |.||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|+..++.+++++|...++..    .
T Consensus       158 adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga-----d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~  232 (477)
T PHA02878        158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGA-----NVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDK  232 (477)
T ss_pred             CCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCC-----CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC
Confidence            345566777 9999999999999999999999987     78888999999999999999999999887655444    3


Q ss_pred             cCCcHHHHHHhc-CchhhhHhhh
Q 043593           77 IKIKLLDIQSLN-IKFKILDIQS   98 (103)
Q Consensus        77 ~~~tpl~~A~~~-~~~~~~~~~~   98 (103)
                      .|.||||+|+.. ++.+++++|-
T Consensus       233 ~g~TpLh~A~~~~~~~~iv~~Ll  255 (477)
T PHA02878        233 CGNTPLHISVGYCKDYDILKLLL  255 (477)
T ss_pred             CCCCHHHHHHHhcCCHHHHHHHH
Confidence            457999999864 6788888773

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.66  E-value=9.8e-16  Score=100.33  Aligned_cols=92  Identities=21%  Similarity=0.183  Sum_probs=81.5

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcccc----
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNI----   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~~----   77 (103)
                      |+....+..|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|+..++..+.    
T Consensus       126 ad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~-----~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~  200 (413)
T PHA02875        126 ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA-----CLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKN  200 (413)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC
Confidence            4566788999999999999999999999999998     7899999999999999999999999998877665532    


Q ss_pred             C-CcHHHHHHhcCchhhhHhhh
Q 043593           78 K-IKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        78 ~-~tpl~~A~~~~~~~~~~~~~   98 (103)
                      + .||+++|+..++.+++++|-
T Consensus       201 ~~~t~l~~A~~~~~~~iv~~Ll  222 (413)
T PHA02875        201 GCVAALCYAIENNKIDIVRLFI  222 (413)
T ss_pred             CCchHHHHHHHcCCHHHHHHHH
Confidence            2 48999999999999999884

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.66  E-value=7.1e-16  Score=74.57  Aligned_cols=54  Identities=39%  Similarity=0.441  Sum_probs=45.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhh
Q 043593           11 EDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGC   69 (103)
Q Consensus        11 g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~   69 (103)
                      |+||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~-----din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGA-----DINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTS-----GTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            7899999999999999999999987     89999999999999999999999998763

...

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.66  E-value=2.7e-16  Score=90.85  Aligned_cols=90  Identities=17%  Similarity=0.121  Sum_probs=73.4

Q ss_pred             cCCCCCCcHHHHHHHcCCHH---HHHHHHHhcCcCchhhhcccc-cCCChHHHHHHHcCCHHHHhhhhhh-hhc----cc
Q 043593            6 KITNSEDTALHIAVSDGRSD---IVLKLVESMGQNASNVLKLQN-EKGNTALHLAAALGNAAFVKIGCLD-IQS----LN   76 (103)
Q Consensus         6 ~~d~~g~t~lh~a~~~~~~~---~~~~Ll~~~~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~-~~~----~~   76 (103)
                      ..|.+|.||||+|+..++.+   ++++|++.|.     +++.++ ..|.||||+|+..++.+++++++.. +..    ..
T Consensus        50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga-----din~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~  124 (154)
T PHA02736         50 EYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGA-----DINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNY  124 (154)
T ss_pred             HhcCCCCEEEEeecccCchhHHHHHHHHHHcCC-----CccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccC
Confidence            35778888888888888763   5788999997     788888 5899999999999999999988752 333    24


Q ss_pred             cCCcHHHHHHhcCchhhhHhhhhh
Q 043593           77 IKIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        77 ~~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      .+.|||++|+..|+.+++++|-.+
T Consensus       125 ~g~tpL~~A~~~~~~~i~~~Ll~~  148 (154)
T PHA02736        125 AFKTPYYVACERHDAKMMNILRAK  148 (154)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc
Confidence            567999999999999999988543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.64  E-value=1.4e-15  Score=100.84  Aligned_cols=91  Identities=19%  Similarity=0.120  Sum_probs=78.2

Q ss_pred             cccccCCCCCCcHHHHHHHcCCH--HHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----
Q 043593            2 IQAAKITNSEDTALHIAVSDGRS--DIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----   75 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~--~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----   75 (103)
                      ++....|..|.||||+|+..++.  .+++.|+..+.     +++.+|..|.||||+|+..|+.+++++|+..++..    
T Consensus       213 ~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~-----din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~  287 (471)
T PHA03095        213 CDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI-----SINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVS  287 (471)
T ss_pred             CCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence            45667899999999999998875  57788888887     89999999999999999999999999987665554    


Q ss_pred             ccCCcHHHHHHhcCchhhhHhh
Q 043593           76 NIKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        76 ~~~~tpl~~A~~~~~~~~~~~~   97 (103)
                      ..|.|||++|+..|+.++++++
T Consensus       288 ~~g~tpl~~A~~~~~~~~v~~L  309 (471)
T PHA03095        288 SDGNTPLSLMVRNNNGRAVRAA  309 (471)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHH
Confidence            4567999999999999999877

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.64  E-value=7.3e-16  Score=109.16  Aligned_cols=93  Identities=24%  Similarity=0.213  Sum_probs=83.9

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccc----c
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLN----I   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~----~   77 (103)
                      |.....+.+|.||||.||..|+..++++|+++|.     +++.++..|+||||.|+..|+.+|+++|+..++..+    .
T Consensus       531 a~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gA-----dv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~  605 (1143)
T KOG4177|consen  531 ANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGA-----DVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLD  605 (1143)
T ss_pred             CceehhcccccchHHHHHhcCCchHHHHhhhCCc-----cccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccccc
Confidence            3456788899999999999999999999999998     899999999999999999999999999988776664    4


Q ss_pred             CCcHHHHHHhcCchhhhHhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      +.|||++|.+.|+.++++.+..
T Consensus       606 g~TpL~iA~~lg~~~~~k~l~~  627 (1143)
T KOG4177|consen  606 GFTPLHIAVRLGYLSVVKLLKV  627 (1143)
T ss_pred             CcchhHHHHHhcccchhhHHHh
Confidence            4699999999999999988754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.63  E-value=3.7e-15  Score=94.03  Aligned_cols=84  Identities=14%  Similarity=0.051  Sum_probs=63.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhccc-ccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHH
Q 043593            8 TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQ-NEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLL   82 (103)
Q Consensus         8 d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl   82 (103)
                      |..|.||||+|+..++.+++++|+++|+     +++.+ +..|.||||+|+..++.+++++++..++..    ..|.|||
T Consensus        67 d~~g~TpLh~Aa~~~~~eivklLL~~GA-----DVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL  141 (300)
T PHA02884         67 ENSKTNPLIYAIDCDNDDAAKLLIRYGA-----DVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPI  141 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            4578888888888888888888888887     77775 457888888888888888888877665544    3456888


Q ss_pred             HHHHhcCchhhhHh
Q 043593           83 DIQSLNIKFKILDI   96 (103)
Q Consensus        83 ~~A~~~~~~~~~~~   96 (103)
                      ++|+..++.++..+
T Consensus       142 ~~A~~~~~~~~~~~  155 (300)
T PHA02884        142 ELALMICNNFLAFM  155 (300)
T ss_pred             HHHHHhCChhHHHH
Confidence            88887666555433

>PHA02946 ankyin-like protein; Provisional

Probab=99.63  E-value=3.2e-15  Score=99.03  Aligned_cols=90  Identities=11%  Similarity=0.034  Sum_probs=72.5

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCC--HHHHhhhhhhhhcc----
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN--AAFVKIGCLDIQSL----   75 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~--~~~~~~l~~~~~~~----   75 (103)
                      ++.+..|.+|.||||+|+..|+.+++++|+++|+     +++.+|..|.||||+|+..++  .+++++|...++..    
T Consensus        63 advn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GA-----din~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~  137 (446)
T PHA02946         63 YSPNETDDDGNYPLHIASKINNNRIVAMLLTHGA-----DPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSV  137 (446)
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcC-----CCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccccc
Confidence            4567889999999999999999999999999997     899999999999999987654  77888877655443    


Q ss_pred             -ccCCcHHHHHHhcCchhhhHhh
Q 043593           76 -NIKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        76 -~~~~tpl~~A~~~~~~~~~~~~   97 (103)
                       ..+.|||+ |+..++.++++++
T Consensus       138 d~~g~tpL~-aa~~~~~~vv~~L  159 (446)
T PHA02946        138 DEEGCGPLL-ACTDPSERVFKKI  159 (446)
T ss_pred             CCCCCcHHH-HHHCCChHHHHHH
Confidence             34468886 5556777777666

>PHA02946 ankyin-like protein; Provisional

Probab=99.62  E-value=3.6e-15  Score=98.79  Aligned_cols=91  Identities=16%  Similarity=0.118  Sum_probs=61.9

Q ss_pred             cccccCCCCCCcHHHHHHHcC--CHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCH-HHHhhhhhhhh-----
Q 043593            2 IQAAKITNSEDTALHIAVSDG--RSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNA-AFVKIGCLDIQ-----   73 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~-~~~~~l~~~~~-----   73 (103)
                      |+....|.+|.||||+|+..+  +.+++++|+. +.     +++.+|..|.||||+|+..++. ++++++...+.     
T Consensus       199 adin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-ga-----din~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~  272 (446)
T PHA02946        199 ISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-ST-----DVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQ  272 (446)
T ss_pred             CCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CC-----CCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCc
Confidence            345567788888888888765  6677777774 54     6778888888888888877763 55555433211     


Q ss_pred             -------------------c-cccCCcHHHHHHhcCchhhhHhhh
Q 043593           74 -------------------S-LNIKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        74 -------------------~-~~~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                                         . ...+.||||+|+..|+.+++++|-
T Consensus       273 ~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll  317 (446)
T PHA02946        273 TVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLL  317 (446)
T ss_pred             HHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHH
Confidence                               0 123458888888888888887773

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.62  E-value=5e-16  Score=92.94  Aligned_cols=92  Identities=16%  Similarity=-0.012  Sum_probs=74.4

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      +.++..|+.|.|||.+|+.+|++++++||++.|+     +++...++..++|.+|+++|..+++++|+......    ..
T Consensus       151 n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GA-----dp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwN  225 (296)
T KOG0502|consen  151 NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGA-----DPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWN  225 (296)
T ss_pred             ccccCccccCchHhHHHHhcCchHHHHHHHHcCC-----ChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccC
Confidence            4578899999999999999999999999999998     77777778888888888888888888876543332    33


Q ss_pred             CCcHHHHHHhcCchhhhHhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      |.|||-+|+..+|.+|++.|-
T Consensus       226 GgTpLlyAvrgnhvkcve~Ll  246 (296)
T KOG0502|consen  226 GGTPLLYAVRGNHVKCVESLL  246 (296)
T ss_pred             CCceeeeeecCChHHHHHHHH
Confidence            458888888888888877664

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.62  E-value=3.6e-15  Score=104.73  Aligned_cols=93  Identities=20%  Similarity=0.213  Sum_probs=74.0

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhh-----------
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCL-----------   70 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~-----------   70 (103)
                      ++.+..|..|.||||+|+..|+.+++++|+++|+     +++.+|..|.||||+|+..|+.+++++|..           
T Consensus       549 ~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga-----din~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~  623 (823)
T PLN03192        549 LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC-----NVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAG  623 (823)
T ss_pred             CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCC-----CCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCc
Confidence            4567889999999999999999999999999998     899999999999998888887777665422           


Q ss_pred             --------------------hhh----ccccCCcHHHHHHhcCchhhhHhhhh
Q 043593           71 --------------------DIQ----SLNIKIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        71 --------------------~~~----~~~~~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                                          .++    ....|.||||+|+..|+.+++++|-.
T Consensus       624 ~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        624 DLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence                                211    22344688888888888888887743

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.61  E-value=1e-14  Score=77.02  Aligned_cols=75  Identities=33%  Similarity=0.371  Sum_probs=64.5

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccc----cCCcHHHHHHhcCc
Q 043593           15 LHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLN----IKIKLLDIQSLNIK   90 (103)
Q Consensus        15 lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~----~~~tpl~~A~~~~~   90 (103)
                      ||+|+..|+.+++++|++.+.     +++.    |.+|||+|+..|+.++++++...+...+    .+.||||+|+..|+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~-----~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGA-----DINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTS-----TTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCcC-----CCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCC
Confidence            799999999999999999776     4554    8899999999999999999887655543    45799999999999


Q ss_pred             hhhhHhhh
Q 043593           91 FKILDIQS   98 (103)
Q Consensus        91 ~~~~~~~~   98 (103)
                      .+++++|-
T Consensus        72 ~~~~~~Ll   79 (89)
T PF12796_consen   72 LEIVKLLL   79 (89)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999884

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02730 ankyrin-like protein; Provisional

Probab=99.60  E-value=5.4e-15  Score=100.97  Aligned_cols=88  Identities=23%  Similarity=0.145  Sum_probs=77.0

Q ss_pred             cCCCCCCcHHHHHHHcC---CHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcC--CHHHHhhhhhhhh------c
Q 043593            6 KITNSEDTALHIAVSDG---RSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALG--NAAFVKIGCLDIQ------S   74 (103)
Q Consensus         6 ~~d~~g~t~lh~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~--~~~~~~~l~~~~~------~   74 (103)
                      ..|.+|+||||+|+..+   +.+++++|+++|+     +++.+|..|.||||+|+..+  +.+++++|...++      .
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GA-----din~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~  110 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGV-----ERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELT  110 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCC-----CCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccc
Confidence            77899999999999987   5899999999998     89999999999999999866  7999999887643      3


Q ss_pred             cccCCcHHHHHHh--cCchhhhHhhh
Q 043593           75 LNIKIKLLDIQSL--NIKFKILDIQS   98 (103)
Q Consensus        75 ~~~~~tpl~~A~~--~~~~~~~~~~~   98 (103)
                      .+.+.+|++.++.  +++.+++++|-
T Consensus       111 ~~~~d~~l~~y~~s~n~~~~~vk~Li  136 (672)
T PHA02730        111 SNINDFDLYSYMSSDNIDLRLLKYLI  136 (672)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHH
Confidence            4557799999887  99999998885

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.60  E-value=5.6e-15  Score=98.25  Aligned_cols=93  Identities=16%  Similarity=0.130  Sum_probs=77.9

Q ss_pred             cccccCCCCCCcHHHHHH--HcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcC--CHHHHhhhhhhhhcc--
Q 043593            2 IQAAKITNSEDTALHIAV--SDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALG--NAAFVKIGCLDIQSL--   75 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~--~~~~~~~l~~~~~~~--   75 (103)
                      |+....|..|.||||+|+  ..|+.+++++|++.|.     +++..+..|.||||+|+..+  +.++++++...++..  
T Consensus        97 a~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~  171 (480)
T PHA03100         97 ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGA-----NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINA  171 (480)
T ss_pred             CCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCC-----CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCccc
Confidence            345677888999999999  8999999999999987     78888999999999999999  899999887655433  


Q ss_pred             --ccCCcHHHHHHhcCchhhhHhhhh
Q 043593           76 --NIKIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        76 --~~~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                        ..+.||||+|+..|+.+++++|-.
T Consensus       172 ~d~~g~tpL~~A~~~~~~~iv~~Ll~  197 (480)
T PHA03100        172 KNRYGYTPLHIAVEKGNIDVIKFLLD  197 (480)
T ss_pred             ccCCCCCHHHHHHHhCCHHHHHHHHH
Confidence              355799999999999999988743

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.60  E-value=3.4e-15  Score=99.61  Aligned_cols=90  Identities=18%  Similarity=0.114  Sum_probs=78.7

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccc-cCCChHHHHHHHcCCHHHHhhhhhhhhccc----c
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQN-EKGNTALHLAAALGNAAFVKIGCLDIQSLN----I   77 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~----~   77 (103)
                      .+...|.+|.|+||+||.+++.+++++|+++|+     ++|..+ .-+.||||+|++.|+..++.+|...++...    +
T Consensus        70 ~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~ga-----dvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~  144 (600)
T KOG0509|consen   70 SVNNPDREGVTLLHWAAINNRLDVARYLISHGA-----DVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQ  144 (600)
T ss_pred             CCCCCCcCCccceeHHHHcCcHHHHHHHHHcCC-----CccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCC
Confidence            467789999999999999999999999999998     899887 778999999999999999999887776653    4


Q ss_pred             CCcHHHHHHhcCchhhhHhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~   97 (103)
                      |-+|+|+|+..++.-.+.-+
T Consensus       145 G~~~lHla~~~~~~~~vayl  164 (600)
T KOG0509|consen  145 GLTPLHLAAQFGHTALVAYL  164 (600)
T ss_pred             CCcHHHHHHHhCchHHHHHH
Confidence            45999999999997666544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.59  E-value=2e-15  Score=73.50  Aligned_cols=50  Identities=26%  Similarity=0.337  Sum_probs=32.1

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHH
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLA   56 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a   56 (103)
                      +.....|..|.||||+||..|+.+++++|++.+.     +++.+|..|.||+++|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~-----d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGA-----DPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT-------TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcC-----CCCCCcCCCCCHHHhC
Confidence            4577899999999999999999999999998887     8999999999999986

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.59  E-value=4.6e-15  Score=94.12  Aligned_cols=91  Identities=30%  Similarity=0.252  Sum_probs=78.9

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhh-----hhhhccccCCcH
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGC-----LDIQSLNIKIKL   81 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~-----~~~~~~~~~~tp   81 (103)
                      ....|.|+|++|+.+|+.++++.|+..|+     ++|.+|..|.|+|+.|+.+||.+++++|+     +....+..|.|+
T Consensus       336 AsQ~gQTALMLAVSHGr~d~vk~LLacgA-----dVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTA  410 (452)
T KOG0514|consen  336 ASQHGQTALMLAVSHGRVDMVKALLACGA-----DVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTA  410 (452)
T ss_pred             hhhhcchhhhhhhhcCcHHHHHHHHHccC-----CCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchh
Confidence            34678999999999999999999999998     99999999999999999999999999864     333444677899


Q ss_pred             HHHHHhcCchhhhHhh--hhhcc
Q 043593           82 LDIQSLNIKFKILDIQ--SLNIK  102 (103)
Q Consensus        82 l~~A~~~~~~~~~~~~--~~~~~  102 (103)
                      |.+|...|+.++..++  -+|||
T Consensus       411 l~IAleagh~eIa~mlYa~~n~~  433 (452)
T KOG0514|consen  411 LSIALEAGHREIAVMLYAHMNIK  433 (452)
T ss_pred             hhhHHhcCchHHHHHHHHHHHhh
Confidence            9999999999998887  55554

>PHA03095 ankyrin-like protein; Provisional

Probab=99.59  E-value=1.1e-14  Score=96.69  Aligned_cols=91  Identities=20%  Similarity=0.161  Sum_probs=64.8

Q ss_pred             cccccCCCCCCcHHHHHHHcC---CHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcC-CHHHHhhhhhhhhcc--
Q 043593            2 IQAAKITNSEDTALHIAVSDG---RSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALG-NAAFVKIGCLDIQSL--   75 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~-~~~~~~~l~~~~~~~--   75 (103)
                      |+....+..|.||||+|+..+   +.+++++|++.|.     +++.++..|.||||+|+..+ ..+++++|...++..  
T Consensus        38 a~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Ga-----din~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~  112 (471)
T PHA03095         38 ADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGA-----DVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA  112 (471)
T ss_pred             CCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCC
Confidence            345566777888888888777   7778888888876     77777778888888888877 477777766554433  


Q ss_pred             --ccCCcHHHHHH--hcCchhhhHhh
Q 043593           76 --NIKIKLLDIQS--LNIKFKILDIQ   97 (103)
Q Consensus        76 --~~~~tpl~~A~--~~~~~~~~~~~   97 (103)
                        ..|.||||+|+  ..++.+++++|
T Consensus       113 ~~~~g~tpLh~a~~~~~~~~~iv~~L  138 (471)
T PHA03095        113 KDKVGRTPLHVYLSGFNINPKVIRLL  138 (471)
T ss_pred             CCCCCCCHHHHHhhCCcCCHHHHHHH
Confidence              34568888887  45566777665

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.59  E-value=1.1e-14  Score=97.13  Aligned_cols=89  Identities=19%  Similarity=0.199  Sum_probs=72.6

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHc-CCHHHHhhhhhhhhccc----
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAAL-GNAAFVKIGCLDIQSLN----   76 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~-~~~~~~~~l~~~~~~~~----   76 (103)
                      |+....|..|.||||.|+..++.+++++|++.|.     +++.+|..|.||||+|+.. ++.+++++|+..++..+    
T Consensus       192 ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga-----~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~  266 (477)
T PHA02878        192 ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGA-----STDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY  266 (477)
T ss_pred             CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC
Confidence            4566788999999999999999999999999997     8899999999999999965 68899998876654432    


Q ss_pred             -cCCcHHHHHHhcCchhhhHhh
Q 043593           77 -IKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        77 -~~~tpl~~A~~~~~~~~~~~~   97 (103)
                       .|.||||+|  .++.+++++|
T Consensus       267 ~~g~TpLh~A--~~~~~~v~~L  286 (477)
T PHA02878        267 ILGLTALHSS--IKSERKLKLL  286 (477)
T ss_pred             CCCCCHHHHH--ccCHHHHHHH
Confidence             456888888  4566676665

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.59  E-value=6e-15  Score=91.65  Aligned_cols=91  Identities=21%  Similarity=0.088  Sum_probs=77.8

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      .+.-|..|.+|||+||..||..+++.|+.+|.     -++..+....||||+|+.+|+.++++.|+...+..    .-|.
T Consensus        27 ln~gddhgfsplhwaakegh~aivemll~rga-----rvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgn  101 (448)
T KOG0195|consen   27 LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGA-----RVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGN  101 (448)
T ss_pred             cccccccCcchhhhhhhcccHHHHHHHHhccc-----ccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCC
Confidence            45568899999999999999999999999998     68888888889999999999999999877554433    4567


Q ss_pred             cHHHHHHhcCchhhhHhhhh
Q 043593           80 KLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~~~   99 (103)
                      ||||+|++.|...+.+-+-.
T Consensus       102 tplhyacfwgydqiaedli~  121 (448)
T KOG0195|consen  102 TPLHYACFWGYDQIAEDLIS  121 (448)
T ss_pred             CchhhhhhhcHHHHHHHHHh
Confidence            99999999999988876643

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.58  E-value=1.7e-14  Score=95.23  Aligned_cols=82  Identities=20%  Similarity=0.217  Sum_probs=63.1

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ++....|..|.||||+|+..++.+++++|++.|.     +++..+..|.||||+|+..|+.++++++...+...    ..
T Consensus       148 ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~-----~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~  222 (434)
T PHA02874        148 ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGA-----YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN  222 (434)
T ss_pred             CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCC
Confidence            4556778899999999999999999999999987     78888899999999999999999998876544322    22


Q ss_pred             CCcHHHHHHhc
Q 043593           78 KIKLLDIQSLN   88 (103)
Q Consensus        78 ~~tpl~~A~~~   88 (103)
                      |.||||+|+..
T Consensus       223 g~TpL~~A~~~  233 (434)
T PHA02874        223 GFTPLHNAIIH  233 (434)
T ss_pred             CCCHHHHHHHC
Confidence            33455544443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.57  E-value=2.2e-14  Score=83.96  Aligned_cols=92  Identities=13%  Similarity=0.161  Sum_probs=73.3

Q ss_pred             cccccCCCCCCcHHHHHHHcCCH----HHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHH---Hhhhhhhhhc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRS----DIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF---VKIGCLDIQS   74 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~---~~~l~~~~~~   74 (103)
                      +++...+.++.+++|.||..|+.    +++++|.+.+.     .++..|..|.||||+|+..|+.+.   +++|...++.
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~-----~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad   85 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGH-----LLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD   85 (166)
T ss_pred             hHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcch-----hhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC
Confidence            45556788899999999999998    45556777776     788889999999999999988654   5666654433


Q ss_pred             c-----ccCCcHHHHHHhcCchhhhHhhh
Q 043593           75 L-----NIKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        75 ~-----~~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      .     ..+.||||+|+..++.++++++-
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll  114 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYELAEWLC  114 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHH
Confidence            2     25679999999999999999874

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.56  E-value=4.9e-14  Score=88.98  Aligned_cols=90  Identities=19%  Similarity=0.031  Sum_probs=74.4

Q ss_pred             ccCCCCCCcH-HHHHHHcCCHHHHHHHHHhcCcCchhhhcccc----cCCChHHHHHHHcCCHHHHhhhhhhhhccc---
Q 043593            5 AKITNSEDTA-LHIAVSDGRSDIVLKLVESMGQNASNVLKLQN----EKGNTALHLAAALGNAAFVKIGCLDIQSLN---   76 (103)
Q Consensus         5 ~~~d~~g~t~-lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~----~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~---   76 (103)
                      ...|..|.|+ ||.|+..|+.++++.|++.|+     +++.++    ..|.||||+|+..++.+++++|...++..+   
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GA-----diN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~  100 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGA-----DPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYA  100 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCC-----CccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCccc
Confidence            3567777776 555666789999999999998     788764    589999999999999999999887665543   


Q ss_pred             --cCCcHHHHHHhcCchhhhHhhhh
Q 043593           77 --IKIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        77 --~~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                        .+.||||+|+..++.++++++-.
T Consensus       101 ~~~g~TpLh~Aa~~~~~eivklLL~  125 (300)
T PHA02884        101 EEAKITPLYISVLHGCLKCLEILLS  125 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence              35799999999999999998843

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.55  E-value=3.2e-14  Score=94.66  Aligned_cols=91  Identities=18%  Similarity=0.214  Sum_probs=77.0

Q ss_pred             cccccCCCCCCcHHHHHHHcC--CHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcccc--
Q 043593            2 IQAAKITNSEDTALHIAVSDG--RSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNI--   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~~--   77 (103)
                      ++....|..|.||||+|+..+  +.+++++|++.|.     +++.++..|.||||+|+..|+.++++++...++..+.  
T Consensus       132 ~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~-----din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~  206 (480)
T PHA03100        132 ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGV-----DINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGD  206 (480)
T ss_pred             CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCC-----CcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCC
Confidence            345678899999999999999  9999999999998     8899999999999999999999999998766554432  


Q ss_pred             --C------CcHHHHHHhcCc--hhhhHhh
Q 043593           78 --K------IKLLDIQSLNIK--FKILDIQ   97 (103)
Q Consensus        78 --~------~tpl~~A~~~~~--~~~~~~~   97 (103)
                        +      .||+|.|+..++  .+++++|
T Consensus       207 ~~~~~~~~~~t~l~~a~~~~~~~~~iv~~L  236 (480)
T PHA03100        207 IETLLFTIFETPLHIAACYNEITLEVVNYL  236 (480)
T ss_pred             CCCCcHHHHHhHHHHHHHhCcCcHHHHHHH
Confidence              2      678888888877  7777766

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.54  E-value=8.2e-15  Score=95.67  Aligned_cols=92  Identities=21%  Similarity=0.153  Sum_probs=57.4

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      .++..+....|||..||.-||.+++++|++++.     +++..+.+|.|-||+|+..|+.+++++|...++..    ..|
T Consensus       109 ~VN~tT~TNStPLraACfDG~leivKyLvE~ga-----d~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kG  183 (615)
T KOG0508|consen  109 SVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGA-----DPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKG  183 (615)
T ss_pred             ccccccccCCccHHHHHhcchhHHHHHHHHcCC-----CCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccC
Confidence            344455555666666666666666666666665     66666666666666666666666666665444333    234


Q ss_pred             CcHHHHHHhcCchhhhHhhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      +|+||.++..|+.+++++|-.
T Consensus       184 NTALH~caEsG~vdivq~Ll~  204 (615)
T KOG0508|consen  184 NTALHDCAESGSVDIVQLLLK  204 (615)
T ss_pred             chHHHhhhhcccHHHHHHHHh
Confidence            566666666666666666643

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.54  E-value=3.6e-14  Score=88.00  Aligned_cols=94  Identities=18%  Similarity=0.086  Sum_probs=83.5

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcc-cccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKL-QNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ++...|.+|.|+|..|+..|+.+.++.|++.|+     |+|- ++..+.||||+|+..|+.++.+.+++.++..    ..
T Consensus        37 ~vn~~D~sGMs~LahAaykGnl~~v~lll~~ga-----DvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsv  111 (396)
T KOG1710|consen   37 QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGA-----DVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSV  111 (396)
T ss_pred             hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCC-----CcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccch
Confidence            467899999999999999999999999999998     6665 6788999999999999999999988877655    35


Q ss_pred             CCcHHHHHHhcCchhhhHhhhhhc
Q 043593           78 KIKLLDIQSLNIKFKILDIQSLNI  101 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~~~  101 (103)
                      |+|+-.+|++-|+++++.++.+.+
T Consensus       112 grTAaqmAAFVG~H~CV~iINN~~  135 (396)
T KOG1710|consen  112 GRTAAQMAAFVGHHECVAIINNHI  135 (396)
T ss_pred             hhhHHHHHHHhcchHHHHHHhccc
Confidence            679999999999999999987654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.54  E-value=4.1e-14  Score=94.64  Aligned_cols=92  Identities=18%  Similarity=0.167  Sum_probs=70.8

Q ss_pred             cccccCCCCCCcHHHHHHHc-----CCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcC---CHHHHhhhhhhhh
Q 043593            2 IQAAKITNSEDTALHIAVSD-----GRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALG---NAAFVKIGCLDIQ   73 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~-----~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~---~~~~~~~l~~~~~   73 (103)
                      |+....|..|.||||.++..     ++.+++++|++.|+     +++.+|..|.||||+|+..+   +.++++++...++
T Consensus        62 advn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Ga-----diN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Ga  136 (489)
T PHA02798         62 ANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGA-----DINKKNSDGETPLYCLLSNGYINNLEILLFMIENGA  136 (489)
T ss_pred             CCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCC-----CCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCC
Confidence            45667888899999887753     56788899998887     78888888999999888765   6778887766554


Q ss_pred             cc----ccCCcHHHHHHhcCc---hhhhHhhh
Q 043593           74 SL----NIKIKLLDIQSLNIK---FKILDIQS   98 (103)
Q Consensus        74 ~~----~~~~tpl~~A~~~~~---~~~~~~~~   98 (103)
                      ..    ..|.||||+|+..++   .+++++|-
T Consensus       137 dvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll  168 (489)
T PHA02798        137 DTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLL  168 (489)
T ss_pred             CccccCCCCCcHHHHHHHcCCcchHHHHHHHH
Confidence            43    455689999888777   77777763

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.54  E-value=2.5e-14  Score=98.03  Aligned_cols=95  Identities=21%  Similarity=0.163  Sum_probs=80.0

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHH-hcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc------
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVE-SMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS------   74 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~------   74 (103)
                      |....++.++.||||.||++|++.+++.|++ .+..    ..+..|..|.||||.|++.||..+++.|+..++.      
T Consensus       297 a~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~r----llne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e  372 (929)
T KOG0510|consen  297 ASINSKNKDEESPLHFAAIYGRINTVERLLQESDTR----LLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSE  372 (929)
T ss_pred             CcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcc----ccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccc
Confidence            4456678999999999999999999999999 4433    6788899999999999999999999997654432      


Q ss_pred             -cccCCcHHHHHHhcCchhhhHhhhhh
Q 043593           75 -LNIKIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        75 -~~~~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                       +.++.||||+|+..|+..+++.+-.+
T Consensus       373 ~D~dg~TaLH~Aa~~g~~~av~~Li~~  399 (929)
T KOG0510|consen  373 ADSDGNTALHLAAKYGNTSAVQKLISH  399 (929)
T ss_pred             cccCCchhhhHHHHhccHHHHHHHHHc
Confidence             34567999999999999999887443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.54  E-value=1e-13  Score=83.83  Aligned_cols=83  Identities=20%  Similarity=0.143  Sum_probs=46.2

Q ss_pred             CCCcHHHHHHHc---CCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHH--cCCHHHHhhhhhhhhcc----ccCCc
Q 043593           10 SEDTALHIAVSD---GRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAA--LGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus        10 ~g~t~lh~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~--~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      .|+||||+|+..   ++.+++++|++.|.     +++.+|..|.||||+++.  .++.+++++|...++..    ..+.|
T Consensus        86 ~g~TpLh~a~~~~~~~~~eiv~~Ll~~ga-----din~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t  160 (209)
T PHA02859         86 NNLSALHHYLSFNKNVEPEILKILIDSGS-----SITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNN  160 (209)
T ss_pred             CCCCHHHHHHHhCccccHHHHHHHHHCCC-----CCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCc
Confidence            566666665543   24566666666665     566666666666666553  24566666554433322    23456


Q ss_pred             HHHH-HHhcCchhhhHhh
Q 043593           81 LLDI-QSLNIKFKILDIQ   97 (103)
Q Consensus        81 pl~~-A~~~~~~~~~~~~   97 (103)
                      |||. +...++.+++++|
T Consensus       161 ~Lh~~a~~~~~~~iv~~L  178 (209)
T PHA02859        161 ILYSYILFHSDKKIFDFL  178 (209)
T ss_pred             HHHHHHHhcCCHHHHHHH
Confidence            6664 3445566666655

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.53  E-value=7.6e-14  Score=96.45  Aligned_cols=92  Identities=17%  Similarity=0.073  Sum_probs=64.3

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCC-HHHHhhhhhhhhc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN-AAFVKIGCLDIQS----LN   76 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~-~~~~~~l~~~~~~----~~   76 (103)
                      |+....|..|.||||+|+..++.+++++|++.|.     +++..+..|.||||+|+..++ ..+++++...++.    ..
T Consensus       366 adin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~ga-----d~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~  440 (682)
T PHA02876        366 ANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGA-----DIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNK  440 (682)
T ss_pred             CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-----CccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCC
Confidence            3456677788888888888888888888888776     677777777777777776555 3445655544333    24


Q ss_pred             cCCcHHHHHHhcC-chhhhHhhh
Q 043593           77 IKIKLLDIQSLNI-KFKILDIQS   98 (103)
Q Consensus        77 ~~~tpl~~A~~~~-~~~~~~~~~   98 (103)
                      .|.||||+|+..+ +.+++++|-
T Consensus       441 ~G~TpLh~Aa~~~~~~~iv~lLl  463 (682)
T PHA02876        441 DLSTPLHYACKKNCKLDVIEMLL  463 (682)
T ss_pred             CCChHHHHHHHhCCcHHHHHHHH
Confidence            5678888888765 577877773

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.53  E-value=7.2e-14  Score=96.87  Aligned_cols=91  Identities=18%  Similarity=0.129  Sum_probs=64.3

Q ss_pred             cccccCCCCCCcHHHHHHHcCC--HHHHHHHHHhcCcCchhhhcccccCCChHHHHHH----------------------
Q 043593            2 IQAAKITNSEDTALHIAVSDGR--SDIVLKLVESMGQNASNVLKLQNEKGNTALHLAA----------------------   57 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~----------------------   57 (103)
                      |+.+..|..|.||||+|+..|+  .+++++|++.|+     +++.+|..|.||||+|+                      
T Consensus       203 ADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GA-----DVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~  277 (764)
T PHA02716        203 VNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGG-----DMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNK  277 (764)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc
Confidence            4566778888888888888875  478888888887     78888888888888653                      


Q ss_pred             ---------------HcCCHHHHhhhhhhhhcc----ccCCcHHHHHHh--cCchhhhHhh
Q 043593           58 ---------------ALGNAAFVKIGCLDIQSL----NIKIKLLDIQSL--NIKFKILDIQ   97 (103)
Q Consensus        58 ---------------~~~~~~~~~~l~~~~~~~----~~~~tpl~~A~~--~~~~~~~~~~   97 (103)
                                     ..|+.+++++|+..++..    ..|+||||+|+.  .++.+++++|
T Consensus       278 ~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklL  338 (764)
T PHA02716        278 VKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLL  338 (764)
T ss_pred             cccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHH
Confidence                           335556666655444332    345688888753  4567787777

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.51  E-value=1.4e-13  Score=83.21  Aligned_cols=83  Identities=10%  Similarity=0.026  Sum_probs=69.5

Q ss_pred             cccccCCCCCCcHHHHHHH--cCCHHHHHHHHHhcCcCchhhhcccccCCChHHHH-HHHcCCHHHHhhhhhhhhcc---
Q 043593            2 IQAAKITNSEDTALHIAVS--DGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHL-AAALGNAAFVKIGCLDIQSL---   75 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~-a~~~~~~~~~~~l~~~~~~~---   75 (103)
                      |+....|.+|.||||+|+.  .++.+++++|++.|.     +++.+|..|.||||. ++..++.+++++|+..++..   
T Consensus       114 adin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ga-----din~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~  188 (209)
T PHA02859        114 SSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGV-----SFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINET  188 (209)
T ss_pred             CCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCC-----CcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCC
Confidence            5677899999999999876  468999999999998     899999999999995 56788999999887655443   


Q ss_pred             -ccCCcHHHHHHhcC
Q 043593           76 -NIKIKLLDIQSLNI   89 (103)
Q Consensus        76 -~~~~tpl~~A~~~~   89 (103)
                       ..|.|||++|...+
T Consensus       189 d~~g~tpl~la~~~~  203 (209)
T PHA02859        189 NKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCCCCCHHHHHhhhh
Confidence             45679999998654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.51  E-value=8.8e-14  Score=91.32  Aligned_cols=85  Identities=16%  Similarity=0.025  Sum_probs=72.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHHH
Q 043593            9 NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLDI   84 (103)
Q Consensus         9 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~~   84 (103)
                      ..+.|++|.++..++.+++++|+++|+     +++.+|..|.||||+|+..|+.+++++|...++..    ..|.||||+
T Consensus       186 ~~~~t~l~~a~~~~~~eIve~LIs~GA-----DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~  260 (437)
T PHA02795        186 IIQYTRGFLVDEPTVLEIYKLCIPYIE-----DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDV  260 (437)
T ss_pred             hhccchhHHHHhcCHHHHHHHHHhCcC-----CcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            347788899999999999999999997     89999999999999999999999999987766554    456799999


Q ss_pred             HHhcCc--------hhhhHhhh
Q 043593           85 QSLNIK--------FKILDIQS   98 (103)
Q Consensus        85 A~~~~~--------~~~~~~~~   98 (103)
                      |+..|+        .+++++|-
T Consensus       261 Aa~~g~~~~~~~~~~eIvelLL  282 (437)
T PHA02795        261 AVDRGSVIARRETHLKILEILL  282 (437)
T ss_pred             HHHcCCcccccccHHHHHHHHH
Confidence            999884        57888774

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.51  E-value=2.4e-14  Score=93.55  Aligned_cols=91  Identities=23%  Similarity=0.217  Sum_probs=80.9

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc---ccC
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL---NIK   78 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~---~~~   78 (103)
                      |+-+..|..|.|.||+||.+||.+++++|++.|.     +++.++..|.|+||.++..|+.+++++|+..++..   ..|
T Consensus       141 ad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gA-----Dvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~G  215 (615)
T KOG0508|consen  141 ADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGA-----DVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHG  215 (615)
T ss_pred             CCCcccccCCCeeEEeeeccCchHHHHHHHHhCC-----CcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCC
Confidence            4567789999999999999999999999999998     89999999999999999999999999987665544   456


Q ss_pred             CcHHHHHHhcCchhhhHhh
Q 043593           79 IKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~   97 (103)
                      .|||..|+..|+.++++.|
T Consensus       216 mtPL~~Aa~tG~~~iVe~L  234 (615)
T KOG0508|consen  216 MTPLLLAAVTGHTDIVERL  234 (615)
T ss_pred             CchHHHHhhhcchHHHHHH
Confidence            7999999999999998876

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.50  E-value=2.1e-14  Score=91.21  Aligned_cols=89  Identities=27%  Similarity=0.168  Sum_probs=64.9

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCC-----------------------------------
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKG-----------------------------------   49 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g-----------------------------------   49 (103)
                      +..|.+|+|+|||++.+.++++++.|++.+..    +++.++.-|                                   
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC----~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAs  337 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVC----DVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKAS  337 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcc----cccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhh
Confidence            45677788888888888888888877777643    555555544                                   


Q ss_pred             ---ChHHHHHHHcCCHHHHhhhhhhhh----ccccCCcHHHHHHhcCchhhhHhh
Q 043593           50 ---NTALHLAAALGNAAFVKIGCLDIQ----SLNIKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        50 ---~tpl~~a~~~~~~~~~~~l~~~~~----~~~~~~tpl~~A~~~~~~~~~~~~   97 (103)
                         .|+|++|+.+|+.++++.|+.-++    .++.|.|+|++|+.+||.+++++|
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklL  392 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLL  392 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHH
Confidence               556666678888888887654333    334566999999999999999887

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.50  E-value=1.5e-13  Score=96.65  Aligned_cols=87  Identities=20%  Similarity=0.127  Sum_probs=76.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHH
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLL   82 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl   82 (103)
                      .+.++.++||.||..|+.++++.|++.|.     +++..|..|.||||+|+..|+.+++++|+..++..    ..|.|||
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~-----d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL  595 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKL-----DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL  595 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHH
Confidence            34467899999999999999999999998     89999999999999999999999999987655443    4567999


Q ss_pred             HHHHhcCchhhhHhhh
Q 043593           83 DIQSLNIKFKILDIQS   98 (103)
Q Consensus        83 ~~A~~~~~~~~~~~~~   98 (103)
                      |+|+..|+.+++++|-
T Consensus       596 ~~A~~~g~~~iv~~L~  611 (823)
T PLN03192        596 WNAISAKHHKIFRILY  611 (823)
T ss_pred             HHHHHhCCHHHHHHHH
Confidence            9999999999998873

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.50  E-value=1.3e-13  Score=72.74  Aligned_cols=61  Identities=39%  Similarity=0.459  Sum_probs=54.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccc
Q 043593           11 EDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLN   76 (103)
Q Consensus        11 g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~   76 (103)
                      |.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.++++++.+.+...+
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENGA-----DINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVN   86 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTTT-----CTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcc-----cccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            8899999999999999999999998     899999999999999999999999999887765544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.48  E-value=1.7e-13  Score=71.99  Aligned_cols=64  Identities=23%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccccC
Q 043593           10 SEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIK   78 (103)
Q Consensus        10 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~~~   78 (103)
                      .|++|||+|+-+|..++++||+..|+     +++.+|++|-|||..|+..||..|+++|+..++.....
T Consensus        33 ggR~plhyAAD~GQl~ilefli~iGA-----~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~   96 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQLSILEFLISIGA-----NIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIH   96 (117)
T ss_pred             CCcccchHhhhcchHHHHHHHHHhcc-----ccCCccccCCcHHHHHHHHhhHHHHHHHHHcCccccee
Confidence            68999999999999999999999998     89999999999999999999999999998887776443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.48  E-value=3.3e-13  Score=93.31  Aligned_cols=92  Identities=14%  Similarity=0.005  Sum_probs=75.2

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhh---------
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDI---------   72 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~---------   72 (103)
                      |+.+..|..|+||||+|+..|+.+++++|++.|+     +++..+..|.||||.|+..++.++++++....         
T Consensus       169 advn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Ga-----d~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~  243 (682)
T PHA02876        169 ADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGA-----DVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLS  243 (682)
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-----CcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHH
Confidence            4567789999999999999999999999999998     88999999999999999999998887654321         


Q ss_pred             ------------------------hccccCCcHHHHHHhcCch-hhhHhhh
Q 043593           73 ------------------------QSLNIKIKLLDIQSLNIKF-KILDIQS   98 (103)
Q Consensus        73 ------------------------~~~~~~~tpl~~A~~~~~~-~~~~~~~   98 (103)
                                              .....|.||||+|+..++. ++++++-
T Consensus       244 L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl  294 (682)
T PHA02876        244 LLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLL  294 (682)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHH
Confidence                                    1123467999999998875 5666653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.48  E-value=3.6e-13  Score=90.22  Aligned_cols=54  Identities=13%  Similarity=0.027  Sum_probs=36.7

Q ss_pred             ccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHHHHHhcCchhhhHhh
Q 043593           44 LQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        44 ~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~~A~~~~~~~~~~~~   97 (103)
                      .+|..|.||||+|+..++.+++++|+..++..    ..|.|||++|+..++.++++.+
T Consensus       251 ~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~L  308 (494)
T PHA02989        251 KKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRI  308 (494)
T ss_pred             CCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            44555777777777777777777766554443    3445778877777777777654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.47  E-value=4.5e-13  Score=89.70  Aligned_cols=93  Identities=20%  Similarity=0.171  Sum_probs=77.5

Q ss_pred             cccccCCCCCCcHHHHHHHcC---CHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCC---HHHHhhhhhhhhcc
Q 043593            2 IQAAKITNSEDTALHIAVSDG---RSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN---AAFVKIGCLDIQSL   75 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~---~~~~~~l~~~~~~~   75 (103)
                      |+.+..|..|.||||+|+..+   +.+++++|++.|+     +++..|..|.||||+++..++   .+++++|+..++..
T Consensus       100 adiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Ga-----dvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi  174 (489)
T PHA02798        100 ADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGA-----DTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI  174 (489)
T ss_pred             CCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCC-----CccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc
Confidence            567788999999999999875   6899999999998     899999999999999999887   89999988766554


Q ss_pred             c-----cCCcHHHHHHhc----CchhhhHhhhh
Q 043593           76 N-----IKIKLLDIQSLN----IKFKILDIQSL   99 (103)
Q Consensus        76 ~-----~~~tpl~~A~~~----~~~~~~~~~~~   99 (103)
                      +     .+.||||.+...    ++.++++++-.
T Consensus       175 n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~  207 (489)
T PHA02798        175 NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVD  207 (489)
T ss_pred             ccccCcCCCcHHHHHHHhccccCCHHHHHHHHH
Confidence            2     346999988754    36777777643

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.46  E-value=4.1e-13  Score=93.18  Aligned_cols=91  Identities=21%  Similarity=0.069  Sum_probs=72.0

Q ss_pred             cccccC-CCCCCcHHHHHHH--cCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCC--HHHHhhhhhhhhcc-
Q 043593            2 IQAAKI-TNSEDTALHIAVS--DGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN--AAFVKIGCLDIQSL-   75 (103)
Q Consensus         2 a~~~~~-d~~g~t~lh~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~--~~~~~~l~~~~~~~-   75 (103)
                      |+.... |..|.||||.|+.  .++.+++++|++.|+     +++.+|..|.||||+|+..|+  .+++++|+..++.. 
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GA-----DVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN  241 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGV-----NVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMD  241 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCC
Confidence            445566 8899999999865  467899999999998     899999999999999999985  48999887766554 


Q ss_pred             ---ccCCcHHHHHH---hcCchhhhHhh
Q 043593           76 ---NIKIKLLDIQS---LNIKFKILDIQ   97 (103)
Q Consensus        76 ---~~~~tpl~~A~---~~~~~~~~~~~   97 (103)
                         ..|.||||.|+   ..++.++++++
T Consensus       242 ~kD~~G~TPLh~Ai~~a~n~~~EIvkiL  269 (764)
T PHA02716        242 MKCVNGMSPIMTYIINIDNINPEITNIY  269 (764)
T ss_pred             CCCCCCCCHHHHHHHhhhccCHHHHHHH
Confidence               34579999874   34555655554

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.45  E-value=6.8e-13  Score=88.94  Aligned_cols=92  Identities=14%  Similarity=0.065  Sum_probs=71.0

Q ss_pred             cccccCCCCCCcHHHHHHHc---CCHHHHHHHHHhcCcCchhhh-cccccCCChHHHHHHHc--CCHHHHhhhhhhhhcc
Q 043593            2 IQAAKITNSEDTALHIAVSD---GRSDIVLKLVESMGQNASNVL-KLQNEKGNTALHLAAAL--GNAAFVKIGCLDIQSL   75 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~---~~~~~~~~Ll~~~~~~~~~~~-~~~~~~g~tpl~~a~~~--~~~~~~~~l~~~~~~~   75 (103)
                      |+.+..|.+|+||||.|+..   ++.+++++|++.|+     ++ +.+|..|.||||+++..  ++.+++++|...++..
T Consensus        99 adin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Ga-----din~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi  173 (494)
T PHA02989         99 ADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGI-----NVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNL  173 (494)
T ss_pred             CCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCC-----CcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc
Confidence            45677888999999987655   67889999999987     78 78889999999988653  5788888887665443


Q ss_pred             -----ccCCcHHHHHHhcC----chhhhHhhh
Q 043593           76 -----NIKIKLLDIQSLNI----KFKILDIQS   98 (103)
Q Consensus        76 -----~~~~tpl~~A~~~~----~~~~~~~~~   98 (103)
                           ..+.|||++|...+    +.+++++|-
T Consensus       174 ~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll  205 (494)
T PHA02989        174 FEKTSLYGLTPMNIYLRNDIDVISIKVIKYLI  205 (494)
T ss_pred             cccccccCCChHHHHHhcccccccHHHHHHHH
Confidence                 34569999887654    777777763

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.45  E-value=2e-12  Score=71.13  Aligned_cols=88  Identities=24%  Similarity=0.263  Sum_probs=74.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc----cccCCcHH
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS----LNIKIKLL   82 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~----~~~~~tpl   82 (103)
                      .|.+|.||||.|+..++.+++++|++.+.     +.+..+..|.+|+++++..+..++++++......    ...+.||+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~-----~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l   77 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGA-----DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPL   77 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCC-----CCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            46789999999999999999999999987     5678889999999999999999999887654422    23456999


Q ss_pred             HHHHhcCchhhhHhhhh
Q 043593           83 DIQSLNIKFKILDIQSL   99 (103)
Q Consensus        83 ~~A~~~~~~~~~~~~~~   99 (103)
                      |+|+..++.++++.+..
T Consensus        78 ~~a~~~~~~~~~~~L~~   94 (126)
T cd00204          78 HLAARNGNLDVVKLLLK   94 (126)
T ss_pred             HHHHHcCcHHHHHHHHH
Confidence            99999999999988854

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02917 ankyrin-like protein; Provisional

Probab=99.44  E-value=1e-12  Score=90.64  Aligned_cols=90  Identities=11%  Similarity=0.111  Sum_probs=73.3

Q ss_pred             cccCCCCCCcHHHHHHHcC-----------------------CHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcC
Q 043593            4 AAKITNSEDTALHIAVSDG-----------------------RSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALG   60 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~-----------------------~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~   60 (103)
                      ....|.+|+||||.|+..+                       ..+++++|+.+|.     +++.+|..|.||||+|+..+
T Consensus       389 ~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GA-----dIN~kd~~G~TpLh~Aa~~~  463 (661)
T PHA02917        389 AVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLK-----DINMIDKRGETLLHKAVRYN  463 (661)
T ss_pred             ccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCC-----CCCCCCCCCcCHHHHHHHcC
Confidence            3445667999999987432                       3457799999998     89999999999999999999


Q ss_pred             CHHHHhhhhhhhhcc----ccCCcHHHHHHh-cCchhhhHhhh
Q 043593           61 NAAFVKIGCLDIQSL----NIKIKLLDIQSL-NIKFKILDIQS   98 (103)
Q Consensus        61 ~~~~~~~l~~~~~~~----~~~~tpl~~A~~-~~~~~~~~~~~   98 (103)
                      +.+++++|...++..    ..+.|||++|.. .++.++++++-
T Consensus       464 ~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL  506 (661)
T PHA02917        464 KQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLL  506 (661)
T ss_pred             CHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHH
Confidence            999999987665544    456799999996 67888888774

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.42  E-value=1.5e-12  Score=78.13  Aligned_cols=94  Identities=26%  Similarity=0.304  Sum_probs=78.8

Q ss_pred             cccccCCCCCCcHHHHHHHcCC-----HHHHHHHHHhcC--cCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc
Q 043593            2 IQAAKITNSEDTALHIAVSDGR-----SDIVLKLVESMG--QNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS   74 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~-----~~~~~~Ll~~~~--~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   74 (103)
                      ++....|..|.||||+|+..++     .+++++|++.+.  .    +.+.+|..|.||||+|+..|+.++++.++..++.
T Consensus        97 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~----~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~  172 (235)
T COG0666          97 ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD----VNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD  172 (235)
T ss_pred             CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCC----CccccCCCCCchhHHHHHcCchHHHHHHHhcCCC
Confidence            3457889999999999999999     999999999987  4    5677799999999999999999999887765544


Q ss_pred             c----ccCCcHHHHHHhcCchhhhHhhhh
Q 043593           75 L----NIKIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        75 ~----~~~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      .    ..+.|++++|+..++.+++..+..
T Consensus       173 ~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         173 PNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             CcccccCCCcchhhhcccchHHHHHHHHh
Confidence            3    456799999999999888887754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.40  E-value=2.2e-12  Score=89.02  Aligned_cols=57  Identities=16%  Similarity=0.051  Sum_probs=48.8

Q ss_pred             cccccCCCCCCcHHHHHHHc---CCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHH
Q 043593            2 IQAAKITNSEDTALHIAVSD---GRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAA   63 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~   63 (103)
                      +.+...|.+|.||||+|++.   |+.+++++|++.|.     +++..+..|.||||+|+..|+.+
T Consensus        23 ~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga-----~v~~~~~~g~TpL~~Aa~~g~~~   82 (661)
T PHA02917         23 DPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGT-----NPLHKNWRQLTPLEEYTNSRHVK   82 (661)
T ss_pred             CcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCC-----CccccCCCCCCHHHHHHHcCChh
Confidence            34567799999999998665   78999999999998     78899999999999999877643

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=9.4e-13  Score=87.24  Aligned_cols=90  Identities=20%  Similarity=0.087  Sum_probs=74.2

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc-----cc
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL-----NI   77 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~-----~~   77 (103)
                      +.+..++.|.|+||-|+..||.++++||+.+|.     ++|..|..|+||||.|+.-++..+++.|...++..     ..
T Consensus       575 DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ga-----nVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSD  649 (752)
T KOG0515|consen  575 DPSQPNDEGITALHNAICAGHYEIVKFLIEFGA-----NVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSD  649 (752)
T ss_pred             CCCCCCccchhHHhhhhhcchhHHHHHHHhcCC-----cccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeeccc
Confidence            456788999999999999999999999999998     89999999999999999999999999887655433     34


Q ss_pred             CCcHHHHH--HhcCchhhhHhh
Q 043593           78 KIKLLDIQ--SLNIKFKILDIQ   97 (103)
Q Consensus        78 ~~tpl~~A--~~~~~~~~~~~~   97 (103)
                      ..|+..-.  ...|+.+|.++|
T Consensus       650 meTa~eKCee~eeGY~~CsqyL  671 (752)
T KOG0515|consen  650 METAAEKCEEMEEGYDQCSQYL  671 (752)
T ss_pred             ccchhhhcchhhhhHHHHHHHH
Confidence            45775544  346777777766

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.38  E-value=4.5e-13  Score=80.45  Aligned_cols=94  Identities=15%  Similarity=0.088  Sum_probs=80.9

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      |+....-+...|+|.+|++.|.+++++.|+.++.     ++|..|..|.|||-+|++.++.+|++.|+..++..    +.
T Consensus       184 Adp~~lgk~resALsLAt~ggytdiV~lLL~r~v-----dVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~ds  258 (296)
T KOG0502|consen  184 ADPDALGKYRESALSLATRGGYTDIVELLLTREV-----DVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDS  258 (296)
T ss_pred             CChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCC-----CcceeccCCCceeeeeecCChHHHHHHHHhcCCCccccccc
Confidence            3444555677899999999999999999999998     89999999999999999999999999988766554    45


Q ss_pred             CCcHHHHHHhcCchhhhHhhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      |.+++.+|+..|+..+.++++..
T Consensus       259 Gy~~mdlAValGyr~Vqqvie~h  281 (296)
T KOG0502|consen  259 GYWIMDLAVALGYRIVQQVIEKH  281 (296)
T ss_pred             CCcHHHHHHHhhhHHHHHHHHHH
Confidence            67999999999999777777654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.36  E-value=4.1e-12  Score=73.35  Aligned_cols=68  Identities=18%  Similarity=0.055  Sum_probs=58.9

Q ss_pred             cccccCC-CCCCcHHHHHHHcCCHHHHHHHHHh-cCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc
Q 043593            2 IQAAKIT-NSEDTALHIAVSDGRSDIVLKLVES-MGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS   74 (103)
Q Consensus         2 a~~~~~d-~~g~t~lh~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   74 (103)
                      |+....| ..|+||||+|+..++.+++++|+.. +.     +++.++..|.||||+|+..++.+++++|...++.
T Consensus        82 adin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~-----d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         82 ADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGV-----NMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC-----CCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3455666 5899999999999999999999985 65     7899999999999999999999999988766544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=5.6e-12  Score=87.15  Aligned_cols=81  Identities=17%  Similarity=0.073  Sum_probs=71.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHHHHHhcC
Q 043593           14 ALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLDIQSLNI   89 (103)
Q Consensus        14 ~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~~A~~~~   89 (103)
                      .|+.|+..|+.+.++.|++.|.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..+.||||+|+..+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Ga-----din~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGA-----DPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCC-----CCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence            4888999999999999999997     89999999999999999999999999987665443    35579999999999


Q ss_pred             chhhhHhhhh
Q 043593           90 KFKILDIQSL   99 (103)
Q Consensus        90 ~~~~~~~~~~   99 (103)
                      +.+++++|-.
T Consensus       160 ~~~iv~~Ll~  169 (664)
T PTZ00322        160 FREVVQLLSR  169 (664)
T ss_pred             cHHHHHHHHh
Confidence            9999999843

>PHA02795 ankyrin-like protein; Provisional

Probab=99.33  E-value=4.9e-12  Score=83.21  Aligned_cols=69  Identities=22%  Similarity=0.196  Sum_probs=61.4

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCC--------HHHHhhhhhhhh
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN--------AAFVKIGCLDIQ   73 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~--------~~~~~~l~~~~~   73 (103)
                      |+....|..|.||||+|+..|+.+++++|++.|+     +++.+|..|.||||+|+..|+        .+++++|+..++
T Consensus       212 ADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GA-----dIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        212 EDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGA-----NVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             CCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-----CCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            5678899999999999999999999999999998     899999999999999999884        689998876554


Q ss_pred             cc
Q 043593           74 SL   75 (103)
Q Consensus        74 ~~   75 (103)
                      ..
T Consensus       287 dI  288 (437)
T PHA02795        287 SI  288 (437)
T ss_pred             CC
Confidence            43

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.33  E-value=1.8e-12  Score=62.96  Aligned_cols=52  Identities=25%  Similarity=0.223  Sum_probs=28.9

Q ss_pred             HHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHHHH
Q 043593           30 LVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLDIQ   85 (103)
Q Consensus        30 Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~~A   85 (103)
                      |++.+..    +++.+|..|.||||+|+..|+.+++++|+..+...    ..|+||+++|
T Consensus         1 LL~~~~~----~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPA----DVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T------TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcC----CCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            4555522    88999999999999999999999999987544433    5668999987

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.31  E-value=1.3e-12  Score=89.20  Aligned_cols=88  Identities=27%  Similarity=0.218  Sum_probs=44.8

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhh----hccccCCc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDI----QSLNIKIK   80 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~----~~~~~~~t   80 (103)
                      +..|.+|.|.||+|+..|+.++++.|+++-.     .....|..|.+|||+|+..|+.+++++++...    +....+.|
T Consensus        43 n~qd~~gfTalhha~Lng~~~is~llle~ea-----~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~t  117 (854)
T KOG0507|consen   43 NLQDYSGFTLLHHAVLNGQNQISKLLLDYEA-----LLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENET  117 (854)
T ss_pred             cccCccchhHHHHHHhcCchHHHHHHhcchh-----hhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcC
Confidence            3445555555555555555555555555554     34445555555555555555555555433211    11123345


Q ss_pred             HHHHHHhcCchhhhHhh
Q 043593           81 LLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~   97 (103)
                      |||.|+..|+.+++.+|
T Consensus       118 plhlaaqhgh~dvv~~L  134 (854)
T KOG0507|consen  118 PLHLAAQHGHLEVVFYL  134 (854)
T ss_pred             ccchhhhhcchHHHHHH
Confidence            55555555555555554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.31  E-value=4.1e-12  Score=79.25  Aligned_cols=90  Identities=28%  Similarity=0.324  Sum_probs=71.9

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      -++..+....||||+|+.+||.++++.|+++..     +++..+..|.|||||||.-|.-.+++-|...++..    .+|
T Consensus        59 rvn~tnmgddtplhlaaahghrdivqkll~~ka-----dvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g  133 (448)
T KOG0195|consen   59 RVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKA-----DVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKG  133 (448)
T ss_pred             ccccccCCCCcchhhhhhcccHHHHHHHHHHhc-----ccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCC
Confidence            356677778999999999999999999999998     89999999999999999999988888776655544    345


Q ss_pred             CcHHHHHHhcCchhhhHhh
Q 043593           79 IKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~   97 (103)
                      .||+..|...-...+.++.
T Consensus       134 ~tpldkakp~l~~~l~e~a  152 (448)
T KOG0195|consen  134 MTPLDKAKPMLKNTLLEIA  152 (448)
T ss_pred             CCchhhhchHHHHHHHHHH
Confidence            6898887543333444443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.31  E-value=1.7e-12  Score=88.64  Aligned_cols=89  Identities=25%  Similarity=0.216  Sum_probs=79.9

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      .+..|..|.+|||+|+|.|+.++++.++..+.     ..+.+...|.||||.++++|+.+.+.+|+..++..    +.+.
T Consensus        75 ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d-----~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~  149 (854)
T KOG0507|consen   75 LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTD-----ILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKE  149 (854)
T ss_pred             hhhhhccCcceEEehhhcCcchHHHHHHhccc-----CCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccc
Confidence            45567899999999999999999999999985     78999999999999999999999999998776655    3446


Q ss_pred             cHHHHHHhcCchhhhHhh
Q 043593           80 KLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~   97 (103)
                      |++.+|+.-|..++++++
T Consensus       150 t~ldlA~qfgr~~Vvq~l  167 (854)
T KOG0507|consen  150 TVLDLASRFGRAEVVQML  167 (854)
T ss_pred             cHHHHHHHhhhhHHHHHH
Confidence            999999999999999987

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.29  E-value=7.9e-11  Score=64.72  Aligned_cols=88  Identities=27%  Similarity=0.303  Sum_probs=75.3

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhh----hccccCCc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDI----QSLNIKIK   80 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~----~~~~~~~t   80 (103)
                      ...|..|.||+|.|+..+..+++++|++.+.     .++..+..+.+|+|+|+..++.++++++....    .....+.|
T Consensus        34 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~-----~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~  108 (126)
T cd00204          34 NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA-----DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRT  108 (126)
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-----CccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCC
Confidence            4568899999999999999999999999986     67778889999999999999999999987643    23345579


Q ss_pred             HHHHHHhcCchhhhHhh
Q 043593           81 LLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~   97 (103)
                      |+++|...++.++++++
T Consensus       109 ~l~~~~~~~~~~~~~~L  125 (126)
T cd00204         109 PLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHHHHHhcCCHHHHHHh
Confidence            99999999888888765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.29  E-value=1.7e-11  Score=71.39  Aligned_cols=81  Identities=21%  Similarity=0.110  Sum_probs=69.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhh----hccccCCcHHHHHHhc
Q 043593           13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDI----QSLNIKIKLLDIQSLN   88 (103)
Q Consensus        13 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~----~~~~~~~tpl~~A~~~   88 (103)
                      .-+.+|+..++...++.|++..+.    .++.+|..|.||||-|+..|+.+++..++..+    +..+.|+||||.|+..
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an----~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKAN----HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKW  140 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccc----cccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcc
Confidence            346788999999999999988764    79999999999999999999999998766443    4446789999999999


Q ss_pred             CchhhhHhh
Q 043593           89 IKFKILDIQ   97 (103)
Q Consensus        89 ~~~~~~~~~   97 (103)
                      .+.+|..+|
T Consensus       141 nN~~va~~L  149 (228)
T KOG0512|consen  141 NNFEVAGRL  149 (228)
T ss_pred             cchhHHHHH
Confidence            999998876

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.27  E-value=1.9e-11  Score=85.49  Aligned_cols=77  Identities=25%  Similarity=0.263  Sum_probs=64.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccc--------------cCCChHHHHHHHcCCHHHHhhhhhhhh
Q 043593            8 TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQN--------------EKGNTALHLAAALGNAAFVKIGCLDIQ   73 (103)
Q Consensus         8 d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~--------------~~g~tpl~~a~~~~~~~~~~~l~~~~~   73 (103)
                      +..|.||||+|+..|+.++++.|++.|+     +++.++              ..|.+|||+|+..++.++++++...++
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GA-----dv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga  199 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGA-----SVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA  199 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCC-----CCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc
Confidence            3569999999999999999999999997     565432              358999999999999999999876553


Q ss_pred             c----cccCCcHHHHHHhcC
Q 043593           74 S----LNIKIKLLDIQSLNI   89 (103)
Q Consensus        74 ~----~~~~~tpl~~A~~~~   89 (103)
                      .    ...++||||+|+..+
T Consensus       200 din~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       200 DILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             chhhHhhhhhHHHHHHHhhh
Confidence            3    345689999999876

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.26  E-value=1.6e-11  Score=87.66  Aligned_cols=87  Identities=21%  Similarity=0.231  Sum_probs=67.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHHH
Q 043593            9 NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLDI   84 (103)
Q Consensus         9 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~~   84 (103)
                      ..|.+++|.+...++..+++.++++|.     +++.++..|.||||+|+..|+..+|++|+..++..    +.|.||||.
T Consensus       505 ~~~l~~lhla~~~~~v~~~~~l~~~ga-----~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~  579 (1143)
T KOG4177|consen  505 KKGLTPLHLAADEDTVKVAKILLEHGA-----NVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQ  579 (1143)
T ss_pred             hhccchhhhhhhhhhHHHHHHHhhcCC-----ceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhH
Confidence            344555555555555555666666665     67778888999999999999999999988765443    566799999


Q ss_pred             HHhcCchhhhHhhhhh
Q 043593           85 QSLNIKFKILDIQSLN  100 (103)
Q Consensus        85 A~~~~~~~~~~~~~~~  100 (103)
                      |+..|+.+|+.+|-.+
T Consensus       580 Aa~~G~~~i~~LLlk~  595 (1143)
T KOG4177|consen  580 AAQQGHNDIAELLLKH  595 (1143)
T ss_pred             HHHcChHHHHHHHHHc
Confidence            9999999999998554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.24  E-value=2.8e-11  Score=58.31  Aligned_cols=49  Identities=27%  Similarity=0.175  Sum_probs=37.5

Q ss_pred             CChHHHHHHHcCCHHHHhhhhhhhhc----cccCCcHHHHHHhcCchhhhHhh
Q 043593           49 GNTALHLAAALGNAAFVKIGCLDIQS----LNIKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        49 g~tpl~~a~~~~~~~~~~~l~~~~~~----~~~~~tpl~~A~~~~~~~~~~~~   97 (103)
                      |.||+|+|+..|+.++++++...+..    ...|.||||+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            67999999999999999997654333    35567999999999999999886

...

>PHA02730 ankyrin-like protein; Provisional

Probab=99.23  E-value=6.3e-11  Score=81.44  Aligned_cols=96  Identities=15%  Similarity=0.030  Sum_probs=76.8

Q ss_pred             cccccCCCCCCcHHHHHHHcC--CHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHH--cCCHHHHhhhhh-hhhc--
Q 043593            2 IQAAKITNSEDTALHIAVSDG--RSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAA--LGNAAFVKIGCL-DIQS--   74 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~--~~~~~~~~~l~~-~~~~--   74 (103)
                      |+....|.+|+||||.|+..+  +.+++++|++.|.. +  +++..+..+.+|++.++.  .++.+++++|.. .+..  
T Consensus        68 Adin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~-~--~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~  144 (672)
T PHA02730         68 VERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSN-A--SNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPS  144 (672)
T ss_pred             CCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCC-C--CcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChh
Confidence            667889999999999999976  79999999999751 0  346677778899988887  899999999874 2211  


Q ss_pred             -c------ccCCcHHHHHHhcCchhhhHhhhhh
Q 043593           75 -L------NIKIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        75 -~------~~~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                       .      ..+-+|+.++...++.+++++|-.+
T Consensus       145 ~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~  177 (672)
T PHA02730        145 KNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKS  177 (672)
T ss_pred             hhhhhhccccchhhhhHhcCCCchHHHHHHHHc
Confidence             1      1345999999999999999999654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.21  E-value=4.8e-11  Score=82.60  Aligned_cols=65  Identities=26%  Similarity=0.271  Sum_probs=60.1

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhh
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLD   71 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   71 (103)
                      |+.+..|..|+||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|+..++.+++++|+..
T Consensus       106 adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Ga-----dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        106 ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGA-----DPTLLDKDGKTPLELAEENGFREVVQLLSRH  170 (664)
T ss_pred             CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence            4567789999999999999999999999999998     8999999999999999999999999988654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.18  E-value=3.6e-10  Score=67.73  Aligned_cols=89  Identities=27%  Similarity=0.204  Sum_probs=76.8

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCC-----HHHHhhhhhhhh---c--
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN-----AAFVKIGCLDIQ---S--   74 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~-----~~~~~~l~~~~~---~--   74 (103)
                      ...+..+.++++.++..+...++.+++..+.     +++.++..|.||+|+++..++     .++++.++..+.   .  
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~  141 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGA-----DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN  141 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCC-----CcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcc
Confidence            4456678999999999999999999999998     789999999999999999999     999998876666   2  


Q ss_pred             --cccCCcHHHHHHhcCchhhhHhhh
Q 043593           75 --LNIKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        75 --~~~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                        ...+.||||+|+..|+.++++++-
T Consensus       142 ~~~~~g~tpl~~A~~~~~~~~~~~ll  167 (235)
T COG0666         142 LRDEDGNTPLHWAALNGDADIVELLL  167 (235)
T ss_pred             ccCCCCCchhHHHHHcCchHHHHHHH
Confidence              234579999999999998888773

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.18  E-value=4.8e-11  Score=83.45  Aligned_cols=84  Identities=17%  Similarity=0.188  Sum_probs=67.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcC---------CHHHHhhhhhhhh------
Q 043593            9 NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALG---------NAAFVKIGCLDIQ------   73 (103)
Q Consensus         9 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~---------~~~~~~~l~~~~~------   73 (103)
                      ..|.||||.|+..++.+++++|++.++     +++.+|..|+||||+|+..+         ...+.+++.....      
T Consensus       173 ~~g~tpL~~Aa~~~~~~iv~lLl~~ga-----din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~  247 (743)
T TIGR00870       173 YHGESPLNAAACLGSPSIVALLSEDPA-----DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSK  247 (743)
T ss_pred             cccccHHHHHHHhCCHHHHHHHhcCCc-----chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChH
Confidence            368999999999999999999999998     89999999999999999876         2233444332211      


Q ss_pred             -----ccccCCcHHHHHHhcCchhhhHhh
Q 043593           74 -----SLNIKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        74 -----~~~~~~tpl~~A~~~~~~~~~~~~   97 (103)
                           ....|.|||++|+..|+.++++++
T Consensus       248 el~~i~N~~g~TPL~~A~~~g~~~l~~lL  276 (743)
T TIGR00870       248 ELEVILNHQGLTPLKLAAKEGRIVLFRLK  276 (743)
T ss_pred             hhhhhcCCCCCCchhhhhhcCCccHHHHH
Confidence                 234567999999999999999877

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.13  E-value=4.5e-10  Score=76.78  Aligned_cols=81  Identities=11%  Similarity=0.014  Sum_probs=61.8

Q ss_pred             cccccCCCCC--CcHHHHHHHcCCHH---HHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc-
Q 043593            2 IQAAKITNSE--DTALHIAVSDGRSD---IVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL-   75 (103)
Q Consensus         2 a~~~~~d~~g--~t~lh~a~~~~~~~---~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~-   75 (103)
                      |+....|.+|  .||||.|+.....+   ++++|+++|+     +++.+|..|.||||+|+..++.+++++|...++.. 
T Consensus       363 ADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GA-----DIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN  437 (631)
T PHA02792        363 NVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYID-----DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADIN  437 (631)
T ss_pred             CchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCC-----ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            3455566664  58898877665543   5778888887     88899999999999999999999999887665544 


Q ss_pred             ---ccCCcHHHHHHh
Q 043593           76 ---NIKIKLLDIQSL   87 (103)
Q Consensus        76 ---~~~~tpl~~A~~   87 (103)
                         ..|.|||++|..
T Consensus       438 ~kD~~G~TpL~~A~~  452 (631)
T PHA02792        438 ITTKYGSTCIGICVI  452 (631)
T ss_pred             CcCCCCCCHHHHHHH
Confidence               345799999865

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.12  E-value=3.1e-10  Score=59.85  Aligned_cols=80  Identities=18%  Similarity=0.079  Sum_probs=67.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccc----cCCcHHHHHHhc
Q 043593           13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLN----IKIKLLDIQSLN   88 (103)
Q Consensus        13 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~----~~~tpl~~A~~~   88 (103)
                      -.+.++...|.++.++.....+.     +++... .|.+|||+|+-.|+.++++++...++..+    ++-|||-.|++.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~-----nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGL-----NVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWE   77 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccc-----cHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHH
Confidence            34678888999999999888885     666554 88999999999999999999877665553    445999999999


Q ss_pred             CchhhhHhhh
Q 043593           89 IKFKILDIQS   98 (103)
Q Consensus        89 ~~~~~~~~~~   98 (103)
                      ||.+++++|=
T Consensus        78 GH~~cVklLL   87 (117)
T KOG4214|consen   78 GHRDCVKLLL   87 (117)
T ss_pred             hhHHHHHHHH
Confidence            9999999983

>PF13606 Ank_3: Ankyrin repeat

Probab=99.10  E-value=1.6e-10  Score=49.07  Aligned_cols=26  Identities=38%  Similarity=0.539  Sum_probs=24.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcC
Q 043593           10 SEDTALHIAVSDGRSDIVLKLVESMG   35 (103)
Q Consensus        10 ~g~t~lh~a~~~~~~~~~~~Ll~~~~   35 (103)
                      +|+||||+||..|+.+++++|++.|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~ga   26 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGA   26 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            58999999999999999999999987

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.08  E-value=2.9e-10  Score=49.31  Aligned_cols=32  Identities=28%  Similarity=0.406  Sum_probs=29.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccc
Q 043593           10 SEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQN   46 (103)
Q Consensus        10 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   46 (103)
                      +|.||||+|+..|+.+++++|++.|+     +++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga-----~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGA-----DINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTS-----CTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcC-----CCCCCC
Confidence            58999999999999999999999998     777765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.07  E-value=5.1e-10  Score=74.60  Aligned_cols=80  Identities=20%  Similarity=0.074  Sum_probs=69.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc----cccCCcHHHHHHhcCc
Q 043593           15 LHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS----LNIKIKLLDIQSLNIK   90 (103)
Q Consensus        15 lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~----~~~~~tpl~~A~~~~~   90 (103)
                      |.-|+..|..++++..+....     |+...+..|.|+||-|++.||.++|++|...++.    +..|+||||+|+..++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~-----DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNn  628 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVT-----DPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNN  628 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhc-----CCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCc
Confidence            455888999999999998887     8999999999999999999999999998866544    4567899999999999


Q ss_pred             hhhhHhhhh
Q 043593           91 FKILDIQSL   99 (103)
Q Consensus        91 ~~~~~~~~~   99 (103)
                      .-+...|..
T Consensus       629 v~~ckqLVe  637 (752)
T KOG0515|consen  629 VPMCKQLVE  637 (752)
T ss_pred             hHHHHHHHh
Confidence            888887754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.04  E-value=3e-10  Score=75.26  Aligned_cols=79  Identities=27%  Similarity=0.170  Sum_probs=66.0

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      .+..+.+|.|+||.+|...+.+++.+|++++.     +++.+|..|+||+|.|+.-|+..++++++..++..    ..+.
T Consensus        66 ~~~~n~DglTalhq~~id~~~e~v~~l~e~ga-----~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~  140 (527)
T KOG0505|consen   66 PNLCNVDGLTALHQACIDDNLEMVKFLVENGA-----NVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGN  140 (527)
T ss_pred             ccccCCccchhHHHHHhcccHHHHHHHHHhcC-----CccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCC
Confidence            35678899999999999999999999999998     89999999999999999999999999977554433    3445


Q ss_pred             cHHHHHHh
Q 043593           80 KLLDIQSL   87 (103)
Q Consensus        80 tpl~~A~~   87 (103)
                      .|+.++.-
T Consensus       141 ~P~dl~e~  148 (527)
T KOG0505|consen  141 MPYDLAED  148 (527)
T ss_pred             CccccccC
Confidence            55555543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.03  E-value=6e-10  Score=76.20  Aligned_cols=98  Identities=13%  Similarity=0.051  Sum_probs=69.0

Q ss_pred             cccccCCCCCCcHHHHHHH-cCCHHHHHHHHHhcCcCch--h-----------------------------hhcccccCC
Q 043593            2 IQAAKITNSEDTALHIAVS-DGRSDIVLKLVESMGQNAS--N-----------------------------VLKLQNEKG   49 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~-~~~~~~~~~Ll~~~~~~~~--~-----------------------------~~~~~~~~g   49 (103)
                      |+++..+..|.+|+|+|+. .++.+++++|++.|+....  .                             .++..|..|
T Consensus        96 AdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  175 (631)
T PHA02792         96 LEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMG  175 (631)
T ss_pred             CCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCC
Confidence            6677778888888888865 5888888888888852000  0                             012334558


Q ss_pred             ChHHHHHHHcC-------CHHHHhhhhhhhhcc----ccCCcHHHHHHhcC--chhhhHhhhh
Q 043593           50 NTALHLAAALG-------NAAFVKIGCLDIQSL----NIKIKLLDIQSLNI--KFKILDIQSL   99 (103)
Q Consensus        50 ~tpl~~a~~~~-------~~~~~~~l~~~~~~~----~~~~tpl~~A~~~~--~~~~~~~~~~   99 (103)
                      .||||+++..+       +.+++++|...++..    ..|.||||+|+...  +.+++++|-.
T Consensus       176 ~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~  238 (631)
T PHA02792        176 KTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFD  238 (631)
T ss_pred             CchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHh
Confidence            88888888887       788888887766544    23468888888877  7777777743

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.00  E-value=5.3e-10  Score=73.61  Aligned_cols=91  Identities=18%  Similarity=0.064  Sum_probs=75.4

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhh-----hhhccccC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCL-----DIQSLNIK   78 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~-----~~~~~~~~   78 (103)
                      .+..+.++.-++.+|+..|....++.+.-.+.     +++..|+...|+||+|+..|+.+++++++.     ......|+
T Consensus       499 ~~~~~~~~~i~~~~aa~~GD~~alrRf~l~g~-----D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~  573 (622)
T KOG0506|consen  499 GGPRENDTVINVMYAAKNGDLSALRRFALQGM-----DLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWG  573 (622)
T ss_pred             cCcccccchhhhhhhhhcCCHHHHHHHHHhcc-----cccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccC
Confidence            34456667778899999999998887777776     899999999999999999999999998754     33445688


Q ss_pred             CcHHHHHHhcCchhhhHhhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      +|||+-|..-+|.+++++|+.
T Consensus       574 rtPlDdA~~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  574 RTPLDDAKHFKHKEVVKLLEE  594 (622)
T ss_pred             CCcchHhHhcCcHHHHHHHHH
Confidence            899999999999999999864

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.99  E-value=8.2e-10  Score=73.22  Aligned_cols=79  Identities=20%  Similarity=0.254  Sum_probs=68.9

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccc----cCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLN----IKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~----~~~   79 (103)
                      .+..+..|.|.||.|+..|..++.++|+..|.     .++.+|..|++|||.|+.-|+.+.+++|+...+..+    .+.
T Consensus       191 ~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~-----~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~  265 (527)
T KOG0505|consen  191 LDARHARGATALHVAAANGYTEVAALLLQAGY-----SVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGE  265 (527)
T ss_pred             ccccccccchHHHHHHhhhHHHHHHHHHHhcc-----CcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCC
Confidence            45667779999999999999999999999998     899999999999999999999999998877666553    456


Q ss_pred             cHHHHHHh
Q 043593           80 KLLDIQSL   87 (103)
Q Consensus        80 tpl~~A~~   87 (103)
                      ||+.++..
T Consensus       266 ~p~dv~de  273 (527)
T KOG0505|consen  266 TPLDVADE  273 (527)
T ss_pred             CCccchhh
Confidence            99888864

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.94  E-value=6.8e-09  Score=64.95  Aligned_cols=83  Identities=18%  Similarity=0.172  Sum_probs=74.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccccCC-----cHHHH
Q 043593           10 SEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIKI-----KLLDI   84 (103)
Q Consensus        10 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~~~~-----tpl~~   84 (103)
                      +-..||..+.-.+..+....|++...     .++..|..|+++|..|+..|+.++++.+++.++..+..+     |||++
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr-----~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmF   85 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVR-----QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMF   85 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhh-----hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHH
Confidence            34678999999999999999998876     799999999999999999999999999998888876553     99999


Q ss_pred             HHhcCchhhhHhh
Q 043593           85 QSLNIKFKILDIQ   97 (103)
Q Consensus        85 A~~~~~~~~~~~~   97 (103)
                      |+..|+.++-.+|
T Consensus        86 AALSGn~dvcrll   98 (396)
T KOG1710|consen   86 AALSGNQDVCRLL   98 (396)
T ss_pred             HHHcCCchHHHHH
Confidence            9999999998876

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.93  E-value=3e-09  Score=73.48  Aligned_cols=83  Identities=17%  Similarity=0.092  Sum_probs=69.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc--c----ccCCcHHH
Q 043593           10 SEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS--L----NIKIKLLD   83 (103)
Q Consensus        10 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~--~----~~~~tpl~   83 (103)
                      .|..||..||-.+..+++++|+++++     |++.+|..|+|.||..+..-..++-.+++..++.  .    ..+-|||.
T Consensus       239 fGEyPLSfAAC~nq~eivrlLl~~gA-----d~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLt  313 (782)
T KOG3676|consen  239 FGEYPLSFAACTNQPEIVRLLLAHGA-----DPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLT  313 (782)
T ss_pred             eccCchHHHHHcCCHHHHHHHHhcCC-----CCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHH
Confidence            47899999999999999999999998     9999999999999999988666676666554444  2    33459999


Q ss_pred             HHHhcCchhhhHhh
Q 043593           84 IQSLNIKFKILDIQ   97 (103)
Q Consensus        84 ~A~~~~~~~~~~~~   97 (103)
                      +|+..|+.++.+-+
T Consensus       314 LAaklGk~emf~~i  327 (782)
T KOG3676|consen  314 LAAKLGKKEMFQHI  327 (782)
T ss_pred             HHHHhhhHHHHHHH
Confidence            99999999977643

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.92  E-value=2.8e-09  Score=71.68  Aligned_cols=67  Identities=19%  Similarity=0.101  Sum_probs=61.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccccC
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIK   78 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~~~   78 (103)
                      -+.+|+|+||+||+.|+..+.++|+.++.     ++...|..|.|+|.||.+.|..+|+..|+..++....+
T Consensus       657 ~~~~grt~LHLa~~~gnVvl~QLLiWyg~-----dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e~~  723 (749)
T KOG0705|consen  657 GEGDGRTALHLAARKGNVVLAQLLIWYGV-----DVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDECG  723 (749)
T ss_pred             cCCCCcchhhhhhhhcchhHHHHHHHhCc-----cceecccCCchhhhhHhhcccHHHHHHHHHcCCCcccc
Confidence            46678999999999999999999999998     89999999999999999999999999988887776655

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.85  E-value=1.4e-08  Score=67.34  Aligned_cols=88  Identities=22%  Similarity=0.207  Sum_probs=70.7

Q ss_pred             ccCCCCCCcH------HHHHHHcCCHHHHHHHHHhcCcCchhhhcccc-cCCChHHHHHHHcCCHHHHhhhhhh----hh
Q 043593            5 AKITNSEDTA------LHIAVSDGRSDIVLKLVESMGQNASNVLKLQN-EKGNTALHLAAALGNAAFVKIGCLD----IQ   73 (103)
Q Consensus         5 ~~~d~~g~t~------lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~----~~   73 (103)
                      ..+|++|.+.      ||.+++.|+.++...|+..|+     ++|..+ ..|.||||+|++.|+...+++|...    ++
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA-----~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a  195 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGA-----QANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGA  195 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHccc-----ccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCC
Confidence            3456666554      789999999999999999998     677655 6699999999999999888876544    44


Q ss_pred             ccccCCcHHHHHHhcCchhhhHhh
Q 043593           74 SLNIKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        74 ~~~~~~tpl~~A~~~~~~~~~~~~   97 (103)
                      ....|.||+.+|...||.++.+-+
T Consensus       196 ~d~~GmtP~~~AR~~gH~~laeRl  219 (669)
T KOG0818|consen  196 QDSSGMTPVDYARQGGHHELAERL  219 (669)
T ss_pred             CCCCCCcHHHHHHhcCchHHHHHH
Confidence            446678999999999998877644

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.76  E-value=2.7e-08  Score=68.95  Aligned_cols=82  Identities=17%  Similarity=0.197  Sum_probs=66.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhccc-----------------------ccCCChHHHHHHHcCCHHHHh
Q 043593           10 SEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQ-----------------------NEKGNTALHLAAALGNAAFVK   66 (103)
Q Consensus        10 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-----------------------~~~g~tpl~~a~~~~~~~~~~   66 (103)
                      .|.|+||+|..+.+.+.++.|++.|+     |++++                       -+.|+.||.+|+..++.++++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gA-----DV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivr  257 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGA-----DVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVR  257 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCC-----chhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHH
Confidence            68999999999999999999999997     55543                       235788999999999999999


Q ss_pred             hhhhh----hhccccCCcHHHHHHhcCchhhhHh
Q 043593           67 IGCLD----IQSLNIKIKLLDIQSLNIKFKILDI   96 (103)
Q Consensus        67 ~l~~~----~~~~~~~~tpl~~A~~~~~~~~~~~   96 (103)
                      +|.+.    .+.+..|+|.||..+.+-..+|.+.
T Consensus       258 lLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~  291 (782)
T KOG3676|consen  258 LLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDL  291 (782)
T ss_pred             HHHhcCCCCCccccCCChHHHHHHHHHHHHHHHH
Confidence            98654    4455677899999887744555443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.73  E-value=6.3e-09  Score=68.70  Aligned_cols=65  Identities=22%  Similarity=0.224  Sum_probs=58.4

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhh
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLD   71 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   71 (103)
                      +....|-+.+|+||.||..|+.+++++|++....    +++.+|.||+|||.-|..++|.+++++|...
T Consensus       531 D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv----~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  531 DLETKDYDDRTALHVAAAEGHVEVVKFLLNACKV----DPDPKDRWGRTPLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             cccccccccchhheeecccCceeHHHHHHHHHcC----CCChhhccCCCcchHhHhcCcHHHHHHHHHH
Confidence            3566788999999999999999999999998755    8899999999999999999999999987544

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.73  E-value=4.2e-08  Score=65.39  Aligned_cols=60  Identities=23%  Similarity=0.315  Sum_probs=49.1

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhh
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI   67 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~   67 (103)
                      .+++.|..|.||||+|+..||...++.|+..++     ++..++..|++|||-|+..|+.+++..
T Consensus        47 ~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~A-----dv~~kN~~gWs~L~EAv~~g~~q~i~~  106 (560)
T KOG0522|consen   47 VIDRRDPPGRTPLHLAVRLGHVEAARILLSAGA-----DVSIKNNEGWSPLHEAVSTGNEQIITE  106 (560)
T ss_pred             eeccccCCCCccHHHHHHhcCHHHHHHHHhcCC-----CccccccccccHHHHHHHcCCHHHHHH
Confidence            467788888888888888888888888888887     788888888888888888888776654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.64  E-value=6.5e-08  Score=64.36  Aligned_cols=54  Identities=20%  Similarity=0.161  Sum_probs=50.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhh
Q 043593            9 NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI   67 (103)
Q Consensus         9 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~   67 (103)
                      +-|.||||.|+..|...-++.|.-+|+     ++..+|..|.||+.+|...||.++.+.
T Consensus       165 ekg~TpLHvAAk~Gq~~Q~ElL~vYGA-----D~~a~d~~GmtP~~~AR~~gH~~laeR  218 (669)
T KOG0818|consen  165 EKGNTPLHVAAKAGQILQAELLAVYGA-----DPGAQDSSGMTPVDYARQGGHHELAER  218 (669)
T ss_pred             ccCCchhHHHHhccchhhhhHHhhccC-----CCCCCCCCCCcHHHHHHhcCchHHHHH
Confidence            568999999999999999999999998     899999999999999999999988764

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.62  E-value=1.1e-07  Score=64.41  Aligned_cols=90  Identities=20%  Similarity=0.131  Sum_probs=75.9

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc----cccCCcH
Q 043593            6 KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS----LNIKIKL   81 (103)
Q Consensus         6 ~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~----~~~~~tp   81 (103)
                      ..+.+-++.||+|+..|+.++++++++++..+   ..++.|..|.|.||-|+..++..++.++.+.++.    ...|.||
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p~e---lld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp  970 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE---LLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTP  970 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCCHH---HHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCCh
Confidence            35667789999999999999999999999753   5778889999999999999999999987765544    3567899


Q ss_pred             HHHHHhcCchhhhHhhh
Q 043593           82 LDIQSLNIKFKILDIQS   98 (103)
Q Consensus        82 l~~A~~~~~~~~~~~~~   98 (103)
                      -.-|-..|+.++...|+
T Consensus       971 ~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  971 QERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             HHHHHhcCCchHHHHHh
Confidence            99999999988877764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.62  E-value=2.3e-08  Score=72.05  Aligned_cols=89  Identities=16%  Similarity=0.128  Sum_probs=43.6

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcc-cccCCChHHHHHHHcCCHHHHhhhhhhhhccccC----
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKL-QNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIK----   78 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~~~----   78 (103)
                      .+.+|..|.+||.+|+-.||..+++.|++...     ++.. .|..+.|+|.++|.+|..+++++|+..++...-+    
T Consensus       783 iehrdkkgf~plImaatagh~tvV~~llk~ha-----~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsD  857 (2131)
T KOG4369|consen  783 IEHRDKKGFVPLIMAATAGHITVVQDLLKAHA-----DVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSD  857 (2131)
T ss_pred             ccccccccchhhhhhcccCchHHHHHHHhhhh-----hhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhh
Confidence            34455555555555555555555555555554     3332 3444555555555555555555544433332211    


Q ss_pred             CcHHHHHHhcCchhhhHhh
Q 043593           79 IKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~   97 (103)
                      -|||.+|...|+.+++.++
T Consensus       858 ytPlsla~Sggy~~iI~~l  876 (2131)
T KOG4369|consen  858 YTPLSLARSGGYTKIIHAL  876 (2131)
T ss_pred             cCchhhhcCcchHHHHHHH
Confidence            1555555555555554443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.58  E-value=2.9e-08  Score=69.52  Aligned_cols=78  Identities=29%  Similarity=0.240  Sum_probs=66.2

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccc-cCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQN-EKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      ...|..|+|+||+++..+...+++.|+.+|.     ++..+| ..|+||||-|...|+.+|+..|+..+...    ..+.
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGi-----dv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkegl  120 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGI-----DVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGL  120 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCc-----eeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCC
Confidence            4578999999999999999999999999987     899988 56999999999999999999877665544    3345


Q ss_pred             cHHHHHHh
Q 043593           80 KLLDIQSL   87 (103)
Q Consensus        80 tpl~~A~~   87 (103)
                      .||+.-++
T Consensus       121 splq~~~r  128 (1267)
T KOG0783|consen  121 SPLQFLSR  128 (1267)
T ss_pred             CHHHHHhh
Confidence            88887665

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.54  E-value=3.7e-08  Score=71.03  Aligned_cols=84  Identities=21%  Similarity=0.194  Sum_probs=73.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhh-----hhccccCCcHHHH
Q 043593           10 SEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLD-----IQSLNIKIKLLDI   84 (103)
Q Consensus        10 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~-----~~~~~~~~tpl~~   84 (103)
                      +-.|+|-.||..||.+.+++|+.+|.     ++..+|+.|.+||.+++..||..+|+.|+-.     ......+.|+|.+
T Consensus       756 n~~t~LT~acaggh~e~vellv~rga-----niehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSl  830 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGA-----NIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSL  830 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcc-----cccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEE
Confidence            44688999999999999999999998     8999999999999999999999999986532     2333456799999


Q ss_pred             HHhcCchhhhHhhh
Q 043593           85 QSLNIKFKILDIQS   98 (103)
Q Consensus        85 A~~~~~~~~~~~~~   98 (103)
                      |+..|.++++++|-
T Consensus       831 acsggr~~vvelLl  844 (2131)
T KOG4369|consen  831 ACSGGRTRVVELLL  844 (2131)
T ss_pred             ecCCCcchHHHHHH
Confidence            99999999999884

>PF13606 Ank_3: Ankyrin repeat

Probab=98.48  E-value=2.1e-07  Score=39.32  Aligned_cols=27  Identities=44%  Similarity=0.432  Sum_probs=22.0

Q ss_pred             CCChHHHHHHHcCCHHHHhhhhhhhhc
Q 043593           48 KGNTALHLAAALGNAAFVKIGCLDIQS   74 (103)
Q Consensus        48 ~g~tpl~~a~~~~~~~~~~~l~~~~~~   74 (103)
                      .|+||||+|+..|+.+++++|++.++.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            478899999999999999988776544

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.43  E-value=6.5e-07  Score=59.92  Aligned_cols=81  Identities=23%  Similarity=0.183  Sum_probs=62.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHH-hcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHHHHHh
Q 043593           13 TALHIAVSDGRSDIVLKLVE-SMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLDIQSL   87 (103)
Q Consensus        13 t~lh~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~~A~~   87 (103)
                      .|+|++......+-+..++. ....    .++..|..|.||||+|+..|+..+++.|...++..    +.|++|||.|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~----~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSL----VIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhc----eeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence            34899998877765544332 2222    67889999999999999999999999887665533    566899999999


Q ss_pred             cCchhhhHhh
Q 043593           88 NIKFKILDIQ   97 (103)
Q Consensus        88 ~~~~~~~~~~   97 (103)
                      .|+.+++..+
T Consensus        98 ~g~~q~i~~v  107 (560)
T KOG0522|consen   98 TGNEQIITEV  107 (560)
T ss_pred             cCCHHHHHHH
Confidence            9998776544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.41  E-value=7.8e-07  Score=52.77  Aligned_cols=65  Identities=23%  Similarity=0.135  Sum_probs=58.8

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhh
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLD   71 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   71 (103)
                      ..+..|..|||+++.|+..|..+.+.+|+.+|..    .+...|..+.+...+|-..|..+++..|.+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a----~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVA----FVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcc----cccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            4678999999999999999999999999999954    7889999999999999999999999876543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.24  E-value=1.9e-06  Score=37.03  Aligned_cols=29  Identities=38%  Similarity=0.450  Sum_probs=23.2

Q ss_pred             CCChHHHHHHHcCCHHHHhhhhhhhhccc
Q 043593           48 KGNTALHLAAALGNAAFVKIGCLDIQSLN   76 (103)
Q Consensus        48 ~g~tpl~~a~~~~~~~~~~~l~~~~~~~~   76 (103)
                      .|.||||+|+..++.+++++|...++..+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            47899999999999999998877655543

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.22  E-value=1.9e-06  Score=60.99  Aligned_cols=85  Identities=24%  Similarity=0.145  Sum_probs=69.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhh----hhccccCCcHHHH
Q 043593            9 NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLD----IQSLNIKIKLLDI   84 (103)
Q Consensus         9 ~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~----~~~~~~~~tpl~~   84 (103)
                      ..|.|+||.|+..+..-.+++|+..+.     +++..|..|.+|+|.+...|+...+..+...    .+....+.+|+++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga-----~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGA-----DVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDI  728 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCC-----cchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhH
Confidence            457999999999999999999999998     8999999999999999999998887765543    3444566799999


Q ss_pred             HHhcCchhhhHhhh
Q 043593           85 QSLNIKFKILDIQS   98 (103)
Q Consensus        85 A~~~~~~~~~~~~~   98 (103)
                      |....+.+..-++.
T Consensus       729 a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  729 AMEAANADIVLLLR  742 (785)
T ss_pred             HhhhccccHHHHHh
Confidence            97666666655543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.09  E-value=9.4e-06  Score=52.92  Aligned_cols=58  Identities=24%  Similarity=0.129  Sum_probs=52.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc
Q 043593           13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL   75 (103)
Q Consensus        13 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~   75 (103)
                      --|-.||+.|..+.++.|++.|.     ++|+.|.+...||.+|+.-||.+.+++|+.+++-.
T Consensus        38 ~elceacR~GD~d~v~~LVetgv-----nVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGV-----NVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCC-----CcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            35788999999999999999987     89999999999999999999999999988877554

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.07  E-value=1.6e-05  Score=54.24  Aligned_cols=83  Identities=19%  Similarity=0.075  Sum_probs=61.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc----cccCCcHHHHHHhcC
Q 043593           14 ALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS----LNIKIKLLDIQSLNI   89 (103)
Q Consensus        14 ~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~----~~~~~tpl~~A~~~~   89 (103)
                      -|..|........+-.|+.+|..+ +.+-.-.+..|.|+||+|+..|++.+.++|...+..    +..|+|+|.+|.+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~-e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSRE-EVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCch-hhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            355566666677777888887432 112223456789999999999999999988765433    345679999999999


Q ss_pred             chhhhHhh
Q 043593           90 KFKILDIQ   97 (103)
Q Consensus        90 ~~~~~~~~   97 (103)
                      .-+|+++|
T Consensus       706 sqec~d~l  713 (749)
T KOG0705|consen  706 SQECIDVL  713 (749)
T ss_pred             cHHHHHHH
Confidence            99999987

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.65  E-value=6.8e-05  Score=53.42  Aligned_cols=47  Identities=26%  Similarity=0.336  Sum_probs=43.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHc
Q 043593            8 TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAAL   59 (103)
Q Consensus         8 d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~   59 (103)
                      -++|+||||.|..+|+++++..|+++|.     ....+|..|..||...++-
T Consensus        83 ~ESG~taLHRaiyyG~idca~lLL~~g~-----SL~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen   83 EESGYTALHRAIYYGNIDCASLLLSKGR-----SLRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             ccccchHhhHhhhhchHHHHHHHHhcCC-----ceEEecccCCCHHHHHhhc
Confidence            4689999999999999999999999998     7899999999999987763

>smart00248 ANK ankyrin repeats

Probab=97.60  E-value=0.00016  Score=28.78  Aligned_cols=26  Identities=27%  Similarity=0.454  Sum_probs=22.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcC
Q 043593           10 SEDTALHIAVSDGRSDIVLKLVESMG   35 (103)
Q Consensus        10 ~g~t~lh~a~~~~~~~~~~~Ll~~~~   35 (103)
                      .|.||+|+++..++.++++.|+..+.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            47889999999999999999998775

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.43  E-value=0.00019  Score=50.82  Aligned_cols=83  Identities=22%  Similarity=0.220  Sum_probs=58.2

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc---------
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS---------   74 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~---------   74 (103)
                      .+.+|--|.++|+.|....+.++++.|+++..     ..       .-+|.+|...|..++++.+......         
T Consensus        55 inc~d~lGr~al~iai~nenle~~eLLl~~~~-----~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d  122 (822)
T KOG3609|consen   55 INCRDPLGRLALHIAIDNENLELQELLLDTSS-----EE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGD  122 (822)
T ss_pred             hhccChHhhhceecccccccHHHHHHHhcCcc-----cc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccc
Confidence            34567777888888888888888888877753     11       2367777888888887765432111         


Q ss_pred             -----cccCCcHHHHHHhcCchhhhHhhh
Q 043593           75 -----LNIKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        75 -----~~~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                           -...-||+.+|+..+|+|++++|-
T Consensus       123 ~~~~~ft~ditPliLAAh~NnyEil~~Ll  151 (822)
T KOG3609|consen  123 ANSPHFTPDITPLMLAAHLNNFEILQCLL  151 (822)
T ss_pred             cCcccCCCCccHHHHHHHhcchHHHHHHH
Confidence                 112249999999999999999983

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.41  E-value=6.5e-05  Score=54.05  Aligned_cols=57  Identities=19%  Similarity=0.058  Sum_probs=29.0

Q ss_pred             hhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc----------cccCCcHHHHHHhcCchhhhHhh
Q 043593           41 VLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS----------LNIKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        41 ~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~----------~~~~~tpl~~A~~~~~~~~~~~~   97 (103)
                      .++.+|..|+||||+|+..|+..++..+....+.          ...|.|+-.+|..+|+..+...+
T Consensus       633 ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~l  699 (975)
T KOG0520|consen  633 AIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYL  699 (975)
T ss_pred             ccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHH
Confidence            3455566666666666666666655543321111          11233555666666665555444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.31  E-value=0.0005  Score=41.18  Aligned_cols=58  Identities=14%  Similarity=-0.050  Sum_probs=49.1

Q ss_pred             hhcccccCCChHHHHHHHcCCHHHHhhhhhhh-----hccccCCcHHHHHHhcCchhhhHhhh
Q 043593           41 VLKLQNEKGNTALHLAAALGNAAFVKIGCLDI-----QSLNIKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        41 ~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~-----~~~~~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      +++..|..|+|+++.|+..|+.+.+++|...+     .....+.+++.+|-..|..+++..+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lf   66 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLF   66 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHH
Confidence            78999999999999999999999999986554     22234569999999999999998874

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.30  E-value=0.00024  Score=51.31  Aligned_cols=89  Identities=12%  Similarity=0.003  Sum_probs=61.9

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHh-cCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhh-hh----hhcccc
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVES-MGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGC-LD----IQSLNI   77 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~-~~----~~~~~~   77 (103)
                      +......|++-+|.++..++.-+++.+++- +.     ....-|..|.-.+|+++. ++.+++-++. ..    ......
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~-----~~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~~ai~i~D~~  640 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGS-----GDLELDRDGQGVIHFCAA-LGYEWAFLPISADGVAIDIRDRN  640 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhccccc-----CchhhcccCCChhhHhhh-cCCceeEEEEeecccccccccCC
Confidence            455667889999999999999999999885 43     333445555555666444 4555544332 22    233356


Q ss_pred             CCcHHHHHHhcCchhhhHhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      |+||||||.+.|+..++..+.
T Consensus       641 G~tpL~wAa~~G~e~l~a~l~  661 (975)
T KOG0520|consen  641 GWTPLHWAAFRGREKLVASLI  661 (975)
T ss_pred             CCcccchHhhcCHHHHHHHHH
Confidence            789999999999999998875

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.09  E-value=0.00039  Score=46.96  Aligned_cols=42  Identities=26%  Similarity=0.271  Sum_probs=34.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHH
Q 043593           11 EDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAA   57 (103)
Q Consensus        11 g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~   57 (103)
                      -.|+||+|+..|...++.+|++.++     |+...|..|.||..++.
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg~-----Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEGC-----DPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhcC-----CchhcccCCCCcccccc
Confidence            4678888888888888888888887     78888888888888765

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=96.83  E-value=0.0021  Score=44.52  Aligned_cols=61  Identities=21%  Similarity=0.229  Sum_probs=54.8

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhh
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCL   70 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~   70 (103)
                      +..|+.|.|+||.|+..++..+..+|++.|+     .....|..|.||-.-|.+.|..++..||-.
T Consensus       928 d~~de~get~lhkaa~~~~r~vc~~lvdaga-----sl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  928 DMADETGETALHKAACQRNRAVCQLLVDAGA-----SLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHhhhhhHHHHHHHHhcchHHHHHHHhcch-----hheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            4567899999999999999999999999998     688889999999999999999999888754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.56  E-value=0.0046  Score=40.89  Aligned_cols=51  Identities=20%  Similarity=0.244  Sum_probs=37.9

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHc
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAAL   59 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~   59 (103)
                      .++++|....+||.+|+..||.+++++|++.|+     ....-...|. -.|+++.+
T Consensus        61 nVN~vD~fD~spL~lAsLcGHe~vvklLLenGA-----iC~rdtf~G~-RC~YgaLn  111 (516)
T KOG0511|consen   61 NVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA-----ICSRDTFDGD-RCHYGALN  111 (516)
T ss_pred             CcchhhcccccHHHHHHHcCcHHHHHHHHHcCC-----cccccccCcc-hhhhhhhh
Confidence            367889999999999999999999999999997     3433334444 33455443

>smart00248 ANK ankyrin repeats

Probab=96.37  E-value=0.0078  Score=23.36  Aligned_cols=23  Identities=48%  Similarity=0.505  Sum_probs=16.6

Q ss_pred             CChHHHHHHHcCCHHHHhhhhhh
Q 043593           49 GNTALHLAAALGNAAFVKIGCLD   71 (103)
Q Consensus        49 g~tpl~~a~~~~~~~~~~~l~~~   71 (103)
                      |.+|+++++..++.++++.+...
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~   24 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDK   24 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc
Confidence            56777888777777777766544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=96.06  E-value=0.0041  Score=44.73  Aligned_cols=61  Identities=21%  Similarity=0.274  Sum_probs=53.6

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhh
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI   67 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~   67 (103)
                      |+++..|.-|.+|+|.+...|+......|+++++     +.+..+..|..|+.++....+.+.+-+
T Consensus       680 a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a-----~~~a~~~~~~~~l~~a~~~~~~d~~~l  740 (785)
T KOG0521|consen  680 ADVNALDSKGRTPLHHATASGHTSIACLLLKRGA-----DPNAFDPDGKLPLDIAMEAANADIVLL  740 (785)
T ss_pred             CcchhhhccCCCcchhhhhhcccchhhhhccccc-----cccccCccCcchhhHHhhhccccHHHH
Confidence            5688899999999999999999999999999988     899999999999999987766555544

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.93  E-value=0.015  Score=39.75  Aligned_cols=71  Identities=18%  Similarity=0.068  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhcCcCchh-hhcccccCCChHHHHHHHcCCHHHHhhhhhhh----hccccCCcHHHHHHhcCchhhhHhh
Q 043593           24 SDIVLKLVESMGQNASN-VLKLQNEKGNTALHLAAALGNAAFVKIGCLDI----QSLNIKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        24 ~~~~~~Ll~~~~~~~~~-~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~----~~~~~~~tpl~~A~~~~~~~~~~~~   97 (103)
                      ...+++|.+.+....+. -+...++...|+||+|+..|..+|+.+++..+    .....|.||+.++.   +.+|-..+
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F  479 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIF  479 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHH
Confidence            34577788776421000 11223566789999999999999998865544    44456679998876   55554443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.36  E-value=0.031  Score=40.27  Aligned_cols=85  Identities=14%  Similarity=0.108  Sum_probs=67.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccccCCcHHHHHHhcCc
Q 043593           11 EDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIKIKLLDIQSLNIK   90 (103)
Q Consensus        11 g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~~~~tpl~~A~~~~~   90 (103)
                      +.--...|+..|+...++..++.... ..-+++-.|.-|.++++.|..+.+.++.++|++.....   +.+|-+|...|.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~-~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~---gdALL~aI~~~~  100 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAV-SKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE---GDALLLAIAVGS  100 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccc-cccchhccChHhhhceecccccccHHHHHHHhcCcccc---chHHHHHHHHHH
Confidence            34446778999999999888876542 22267778999999999999999999999987765443   678889999999


Q ss_pred             hhhhHhhhh
Q 043593           91 FKILDIQSL   99 (103)
Q Consensus        91 ~~~~~~~~~   99 (103)
                      .+.++++-.
T Consensus       101 v~~VE~ll~  109 (822)
T KOG3609|consen  101 VPLVELLLV  109 (822)
T ss_pred             HHHHHHHHh
Confidence            999988744

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=86.11  E-value=6.2  Score=24.95  Aligned_cols=88  Identities=10%  Similarity=0.081  Sum_probs=50.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHH--cCCHHHHhhhhhhh--------hccccCCcH
Q 043593           12 DTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAA--LGNAAFVKIGCLDI--------QSLNIKIKL   81 (103)
Q Consensus        12 ~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~--~~~~~~~~~l~~~~--------~~~~~~~tp   81 (103)
                      .+++.++...+..+++.+|++.-...+++......  +.--+.++-+  .-+..++++.+..+        ...+.|.|-
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~--~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEK--ELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhcCc--chhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            45666777677777888888765322222222221  1112223322  23345555533221        223667799


Q ss_pred             HHHHHhcCchhhhHhhhhhc
Q 043593           82 LDIQSLNIKFKILDIQSLNI  101 (103)
Q Consensus        82 l~~A~~~~~~~~~~~~~~~~  101 (103)
                      |.-|...++.+++.+|-.++
T Consensus       258 LDNA~Ky~~~emi~~Llk~G  277 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYG  277 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcC
Confidence            99999999999999986553

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=80.98  E-value=4.6  Score=20.40  Aligned_cols=47  Identities=17%  Similarity=0.123  Sum_probs=36.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhh
Q 043593           13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLD   71 (103)
Q Consensus        13 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~   71 (103)
                      ..+..|...|+.++++.+++.+.      ++      ...+..|....+-++++++.+.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~------~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK------PD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc------cH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            45788999999999998887653      11      2458889998999999988665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-06
2rfa_A	232	Transient receptor potential cation channel subfa	2e-06
2rfa_A	232	Transient receptor potential cation channel subfa	6e-05
2rfa_A	232	Transient receptor potential cation channel subfa	7e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-04
2pnn_A	273	Transient receptor potential cation channel subfa	1e-05
2pnn_A	273	Transient receptor potential cation channel subfa	3e-04
2pnn_A	273	Transient receptor potential cation channel subfa	5e-04
2pnn_A	273	Transient receptor potential cation channel subfa	6e-04
2etb_A	256	Transient receptor potential cation channel subfam	1e-05
2etb_A	256	Transient receptor potential cation channel subfam	4e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-04

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 7  ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVK 66
          +T   DTALH+AV       +  L+         +  LQN+ G TALHLAA LG A+ V+
Sbjct: 5  VTEDGDTALHLAVIHQHEPFLDFLL-GFSAGHEYL-DLQNDLGQTALHLAAILGEASTVE 62

Query: 67 I 67
           
Sbjct: 63 K 63

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 8  TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           +   TALH+A   G +  V KL       A  V  +    G+TALHLA  +       +
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYA---AGA-GV-LVAERGGHTALHLACRVRAHTCACV 96

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.1 bits (92), Expect = 6e-05
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 5   AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF 64
                   T LH+AV    + ++  L++     A      +   G T L  A    N   
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLK---AGAD--PTARMYGGRTPLGSALLRPNPIL 240

Query: 65  VKI 67
            ++
Sbjct: 241 ARL 243

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.1 bits (92), Expect = 6e-05
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
                T LH+AV    +++V  L +      +++ K +   G T LHLA     A+ +++
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRD----AGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 36.0 bits (84), Expect = 8e-04
 Identities = 5/54 (9%), Positives = 11/54 (20%), Gaps = 5/54 (9%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN 61
                T L  A+      +   L       A            +    + +  +
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLRA---HGAP--EPEDGGDKLSPCSSSGSDSD 270

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 6  KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
          ++T   D+ LH+A+      + ++++  +  + + +   QN    T LHLA         
Sbjct: 3  QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIA 61

Query: 66 KI 67
          + 
Sbjct: 62 EA 63

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 9  NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          N + T LH+AV   + +I   L+           +L++ +GNT LHLA   G  A V +
Sbjct: 43 NLQQTPLHLAVITNQPEIAEALLG---AGCD--PELRDFRGNTPLHLACEQGCLASVGV 96

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVES-MGQNASNVLKLQNEKGNTALHLAAALGNAAFVK 66
               +T LH+A   G    V  L +S    +  ++LK  N  G+T LHLA+  G    V+
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

Query: 67  I 67
           +
Sbjct: 135 L 135

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           TALH+AV     D+V  L++      ++V      +G +   L     +    + 
Sbjct: 153 TALHLAVDLQNPDLVSLLLK----CGADV-NRVTYQGYSPYQLTWGRPSTRIQQQ 202

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             +  T LH+A   G   IV  LV       ++V   +   G TALHLA  L N   V +
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVS----LGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             E+  LH+AV    +   L LV+ + QN  ++   +   GNTALH AA       +K+
Sbjct: 169 APEELVLHLAVKVA-NQASLPLVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKL 225

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVE-----SMGQNASNVLKLQNEKGNTALHLAAALGNA 62
            +  +T LHI +         ++         G +  ++  + N +G T   LA   GN 
Sbjct: 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI 210

Query: 63  AFVKI 67
              + 
Sbjct: 211 VMFQH 215

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 39.1 bits (92), Expect = 6e-05
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 12 DTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          ++ L +A  +     + KL++  G      +  +   G TALH+AA   N     +
Sbjct: 4  ESPLLLAAKENDVQALSKLLKFEGCE----VHQRGAMGETALHIAALYDNLEAAMV 55

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 38.7 bits (91), Expect = 7e-05
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 8  TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEK---GNTALHLAAALGNAAF 64
              +TALHIA      +  + L+E        V +    +   G TALH+A    N   
Sbjct: 34 GAMGETALHIAALYDNLEAAMVLME---AAPELVFEPMTSELYEGQTALHIAVINQNVNL 90

Query: 65 VKI 67
          V+ 
Sbjct: 91 VRA 93

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           TALH+AV        L +V+ + QN+ N+   Q  KG+TALH      NA  +K+
Sbjct: 171 TALHLAVRSVDR-TSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAECLKL 223

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.8 bits (102), Expect = 2e-06
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 8  TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
              DT LHIAV  G    V +LV    Q    +  + N    T LHLA      + V++
Sbjct: 6  DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRL 64

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 38.6 bits (91), Expect = 9e-05
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
                TA H+A        +  L++S      ++ + +N  G TALH+A        V++
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQL 134

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 5   AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF 64
           A    S  + L  AV +    +V  L++     A+  +  Q   G++ALH A+  G    
Sbjct: 144 AVDIKSGRSPLIHAVENNSLSMVQLLLQ---HGAN--VNAQMYSGSSALHSASGRGLLPL 198

Query: 65  VKI 67
           V+ 
Sbjct: 199 VRT 201

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             S  +ALH A   G   +V  LV   G +      L+N   +T L +A +      ++ 
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLV-RSGAD----SSLKNCHNDTPLMVARSRRVIDILRG 234

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 8  TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           N   T LH+AV      +V  LV      AS      +  G TA HLA    +   ++ 
Sbjct: 43 NNLRQTPLHLAVITTLPSVVRLLVT---AGAS--PMALDRHGQTAAHLACEHRSPTCLRA 97

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             LH+AV       +  LV+ + QN  ++   +   GNTALH AA       +K+
Sbjct: 192 LVLHLAVKVANQASLP-LVDFIIQNGGHL-DAKAADGNTALHYAALYNQPDCLKL 244

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.5 bits (101), Expect = 3e-06
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 3  QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNA 62
           AA + +  +T    A        + +L+E    +A       +E G TAL   A LG+ 
Sbjct: 36 IAADVVSEYETPWWTAARKADEQALSQLLEDRDVDA------VDENGRTALLFVAGLGSD 89

Query: 63 AFVKI 67
            V++
Sbjct: 90 KCVRL 94

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 5   AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF 64
            +      TALH+A    R ++V  LVE      +++ ++++E+G TAL LA  +     
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVE----LGADI-EVEDERGLTALELAREILKTTP 158

Query: 65  VKI 67
              
Sbjct: 159 KGN 161

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 39.8 bits (94), Expect = 3e-05
 Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 8/66 (12%)

Query: 2  IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN 61
          I  ++          I   DG S   +         A++V      +  T    AA   +
Sbjct: 5  IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSY----IAADV----VSEYETPWWTAARKAD 56

Query: 62 AAFVKI 67
             +  
Sbjct: 57 EQALSQ 62

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 42.0 bits (100), Expect = 4e-06
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           ++H   + G  D + + +    +  + V K  +E+G T L  A+A G    V+ 
Sbjct: 4  LSIHQLAAQGELDQLKEHLR---KGDNLVNK-PDERGFTPLIWASAFGEIETVRF 54

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 38.9 bits (92), Expect = 5e-05
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           T L  AV       V  L+    + A ++   + + G T + LA ALG     ++
Sbjct: 104 TPLLYAVRGNHVKCVEALLA---RGA-DL-TTEADSGYTPMDLAVALGYRKVQQV 153

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 38.6 bits (91), Expect = 8e-05
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
               ++AL +A + G +DIV  L+E   ++    + + +  G T L  A    +   V+ 
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLE---RDVD--INIYDWNGGTPLLYAVRGNHVKCVEA 120

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          T L  A + G  + V  L+E     A +   +  ++  +AL LA+  G    V +
Sbjct: 38 TPLIWASAFGEIETVRFLLE---WGA-DP-HILAKERESALSLASTGGYTDIVGL 87

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.2 bits (100), Expect = 5e-06
 Identities = 11/60 (18%), Positives = 27/60 (45%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             +++T L  A+     + +  +++++   +S  L   N++GN+ LH A  +        
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 8  TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           +     +H+A   G++D V +L+E      S    +QN  G TALHLA   G     K 
Sbjct: 17 DDENMEKIHVAARKGQTDEVRRLIE---TGVS--PTIQNRFGCTALHLACKFGCVDTAKY 71

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
               ++ LH A+     D+ ++ VE         + +++ +    L+L+         K 
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRFVE---MGID--VNMEDNEHTVPLYLSVRAAMVLLTKE 262

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 11/56 (19%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIG 68
             +H+AV   ++D+V+ LVE              E+G     L          +IG
Sbjct: 86  KPIHLAVMANKTDLVVALVEG-----------AKERGQMPESLLNECDEREVNEIG 130

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 10/69 (14%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVE---------SMGQNASNVLKLQNEKGNTALHLAAA 58
            N     L+++V      +  +L++             N + VL          +  AA 
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP-DRVVWLDFVPAAAD 299

Query: 59  LGNAAFVKI 67
                 +++
Sbjct: 300 PSKQEVLQL 308

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.1 bits (100), Expect = 5e-06
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           T    + LH A   G +DIV  L++     AS      +  G T L +A  LG  +   +
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLK---NGAS--PNEVSSDGTTPLAIAKRLGYISVTDV 395

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 8  TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            S  T LH+A   G   IV  L++   + AS    + N K  T LH+AA  G+    K 
Sbjct: 11 GESGLTPLHVASFMGHLPIVKNLLQ---RGAS--PNVSNVKVETPLHMAARAGHTEVAKY 65

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           T +  T LHIA  +G  + VL L+E   + AS       +KG T LH+AA  G     ++
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLE---KEAS--QACMTKKGFTPLHVAAKYGKVRVAEL 164

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 6   KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
             +    T LH+A  +G +++V  L+       +N   L N+ G T LHL A  G+    
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLS----KQANG-NLGNKSGLTPLHLVAQEGHVPVA 294

Query: 66  KI 67
            +
Sbjct: 295 DV 296

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             +  T LH+AV     DIV  L+    +  S         G T LH+AA        + 
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLP---RGGS--PHSPAWNGYTPLHIAAKQNQVEVARS 230

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             +  T LHIA    + ++   L++      S     ++ +G T LHLAA  G+A  V +
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQ---YGGS--ANAESVQGVTPLHLAAQEGHAEMVAL 263

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             S  T LH+   +G   +   L++         +      G T LH+A+  GN   VK 
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIK---HGVM--VDATTRMGYTPLHVASHYGNIKLVKF 329

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           T    T LH+A   G   +V  L++    + ++V   + + G + LH AA  G+   V +
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQ----HQADV-NAKTKLGYSPLHQAAQQGHTDIVTL 362

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 38.6 bits (91), Expect = 9e-05
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 8  TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
              +T LH+A   G +++   L++     A   +  + +   T LH AA +G+   VK+
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQ---NKAK--VNAKAKDDQTPLHCAARIGHTNMVKL 98

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           T    T LH+A   G+  +   L+E   ++A        + G T LH+A    N   VK+
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLE---RDAH--PNAAGKNGLTPLHVAVHHNNLDIVKL 197

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
              + T LH A   G +++V  L+E    N +N   L    G+T LH+AA  G+   V  
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLLE----NNANP-NLATTAGHTPLHIAAREGHVETVLA 131

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 41.2 bits (98), Expect = 6e-06
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 5  AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF 64
          A   +  D  L  A   G  + V KL      N     +    + +T LH AA     + 
Sbjct: 2  AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNC----RDIEGRQSTPLHFAAGYNRVSV 57

Query: 65 VKI 67
          V+ 
Sbjct: 58 VEY 60

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.8 bits (97), Expect = 9e-06
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           N  +  LH+A  +G   +V  LV+     ASNV   +N KG+TA  LA   G    V +
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVK---HTASNV-GHRNHKGDTACDLARLYGRNEVVSL 155

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 36.2 bits (85), Expect = 5e-04
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            +    +H A   G  D +  L+     +    + +++ +GN  LHLAA  G+   V+ 
Sbjct: 68  RTGFAVIHDAARAGFLDTLQTLL-EFQAD----VNIEDNEGNLPLHLAAKEGHLRVVEF 121

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
               T L +AV      +V +L+E         +   +  G TAL LA  L      ++
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAEL 271

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 5  AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF 64
           +      T LH AV   R DIV  L+   G +      L+ + G T   LAA  G+   
Sbjct: 33 FQEEEGGWTPLHNAVQMSREDIVELLL-RHGAD----PVLRKKNGATPFLLAAIAGSVKL 87

Query: 65 VKI 67
          +K+
Sbjct: 88 LKL 90

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            N    AL  A+       V  +   +  + ++V  ++ E+G T L LA    +   V+ 
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQR 237

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVK 66
           TAL  A   G  +++  L++ MG +    +   +  G  AL  A    + + V+
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGAD----VNACDNMGRNALIHALLSSDDSDVE 199

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN 61
             L +A    +  IV  L+++  Q A   +  ++  GNT LH    + +
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPAD--ISARDSVGNTVLHALVEVAD 196

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 5   AKITNSEDTALHIAV---SDGRSDIVLKLVESMGQNASNVLKLQNE-------KGNTALH 54
            K   +  T L  A+    +G++D +  L++ + +   ++ +  N        KG TALH
Sbjct: 48  FKDPETGKTCLLKAMLNLHNGQNDTIALLLD-VARKTDSLKQFVNASYTDSYYKGQTALH 106

Query: 55  LAAALGNAAFVKI 67
           +A    N   V +
Sbjct: 107 IAIERRNMTLVTL 119

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 11/66 (16%)

Query: 13  TALHIAVSDGRSDIV-LKLVESMGQN----------ASNVLKLQNEKGNTALHLAAALGN 61
           T LH  V    + +   K V SM                + ++ N KG T L LAA+ G 
Sbjct: 186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245

Query: 62  AAFVKI 67
              +  
Sbjct: 246 IGVLAY 251

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 13  TALHIAVSDGRSDIVLKLVE---------SMGQNASNVLKLQNEKGNTALHLAAALGNAA 63
           TALHIA+      +V  LVE         +         +     G   L LAA     A
Sbjct: 103 TALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162

Query: 64  FVKI 67
            VK 
Sbjct: 163 IVKF 166

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            + E++AL I + DG   +  +L            ++ N +G T L LAA  G     + 
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCP---TVQL--EEISNHQGLTPLKLAAKEGKIEIFRH 239

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 39.8 bits (93), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN 61
             L +A    + D+V  L+E+  Q AS  L+  +  GNT LH    + +
Sbjct: 138 LPLSLAACTKQWDVVTYLLENPHQPAS--LEATDSLGNTVLHALVMIAD 184

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
              DTALH A   G +DIV  L+    + A     L+N +   A  +A     A+ +K 
Sbjct: 138 KLGDTALHAAAWKGYADIVQLLLA---KGAR--TDLRNIEKKLAFDMATNAACASLLKK 191

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             +  TAL+ A   G  DIV  L           L  QN+ G+TALH AA  G A  V++
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQPNIE----LNQQNKLGDTALHAAAWKGYADIVQL 158

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 10/62 (16%)

Query: 6  KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
           IT+  DT      S GR+ ++           SN +  Q E  +  LH AA  GN +++
Sbjct: 40 YITDMSDTNWWKGTSKGRTGLI----------PSNYVAEQAESIDNPLHEAAKRGNLSWL 89

Query: 66 KI 67
          + 
Sbjct: 90 RE 91

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 38.8 bits (91), Expect = 7e-05
 Identities = 8/70 (11%), Positives = 19/70 (27%), Gaps = 5/70 (7%)

Query: 12 DTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLD 71
             +  A+         +L    G      +    +  +T      + G    +    + 
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGD-----IIYITDMSDTNWWKGTSKGRTGLIPSNYVA 67

Query: 72 IQSLNIKIKL 81
           Q+ +I   L
Sbjct: 68 EQAESIDNPL 77

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             S D  LH A   G    + + ++    N   V    ++ G+TAL+ A   G+   V++
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECLD----NRVGV-NGLDKAGSTALYWACHGGHKDIVEM 124

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 3  QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNA 62
           AA + +  +T    A        + +L+E    +A       +E G TAL   A LG+ 
Sbjct: 37 IAADVVSEYETPWWTAARKADEQALSQLLEDRDVDA------VDENGRTALLFVAGLGSD 90

Query: 63 AFVKI 67
            V++
Sbjct: 91 KCVRL 95

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 8/66 (12%)

Query: 2  IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN 61
          I  ++          I   DG S   +         A++V      +  T    AA   +
Sbjct: 6  IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSY----IAADV----VSEYETPWWTAARKAD 57

Query: 62 AAFVKI 67
             +  
Sbjct: 58 EQALSQ 63

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 39.5 bits (93), Expect = 5e-05
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 5   AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF 64
            +      TALH+A    R ++V  LVE      +++ ++++E+G TAL LA  +     
Sbjct: 105 HRDMRGGLTALHMAAGYVRPEVVEALVE----LGADI-EVEDERGLTALELAREILKTTP 159

Query: 65  VKI 67
              
Sbjct: 160 KGN 162

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 40.9 bits (97), Expect = 1e-05
 Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 4/55 (7%)

Query: 13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            LH A  +     V +L+ S        L  +++ G   LH + +         
Sbjct: 4  YPLHQACMENEFFKVQELLHSKPSL----LLQKDQDGRIPLHWSVSFQAHEITSF 54

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 9  NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
                LH +VS    +I   L+ S  +N  N+    ++ G T  H+A ++GN   VK 
Sbjct: 34 QDGRIPLHWSVSFQAHEITSFLL-SKMENV-NLDDYPDDSGWTPFHIACSVGNLEVVKS 90

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 38.6 bits (91), Expect = 8e-05
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
                  LH A S G   ++  L   +G++A N    Q+++G T L  A A G+     +
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLC-GLGKSAVNW---QDKQGWTPLFHALAEGHGDAAVL 192

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAA 57
                T L  A+++G  D  + LVE  G        L + KG  A  +A 
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAE----YDLVDNKGAKAEDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVE-SMGQNASNVLKLQNEKGNTALHLAAALGNAAFVK 66
            +S  T  HIA S G  ++V  L +  +  +    L     +G T LHLA         +
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPD----LNKITNQGVTCLHLAVGKKWFEVSQ 124

Query: 67  I 67
            
Sbjct: 125 F 125

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           TN   T LH+AV     ++   L+E    N ++V +++++     LH AA++G+   +++
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLIE----NGASV-RIKDKFNQIPLHRAASVGSLKLIEL 158

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 40.5 bits (96), Expect = 1e-05
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNAS-NVLKLQNEKGNTALHLAAALGNAAFVK 66
              +DT LH+A S G  DIV KL++     A  N     NE GN  LH A   G     +
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQ---YKADINA---VNEHGNVPLHYACFWGQDQVAE 122

Query: 67  I 67
            
Sbjct: 123 D 123

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 39.7 bits (94), Expect = 2e-05
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 8  TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          +      +     +G +  V   ++      +++    ++ G + LH A   G +A V++
Sbjct: 2  SPEFMDDIFTQCREGNAVAVRLWLD---NTENDL-NQGDDHGFSPLHWACREGRSAVVEM 57

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 37.8 bits (89), Expect = 1e-04
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
               +  LH A   G+  +   LV     N + V  + N+ G   +  A A       + 
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVA----NGALV-SICNKYGEMPVDKAKAPLRELLRER 156

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 37.0 bits (87), Expect = 2e-04
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          + LH A  +GRS +V  L+       + +  + N   +T LHLAA+ G+   V+ 
Sbjct: 41 SPLHWACREGRSAVVEMLIM----RGARI-NVMNRGDDTPLHLAASHGHRDIVQK 90

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN 61
             L +A    +  IV  L E+  + A   L+ Q+ +GNT LH   A+ +
Sbjct: 142 LPLSLAACTNQPHIVHYLTENGHKQAD--LRRQDSRGNTVLHALVAIAD 188

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 11/65 (16%)

Query: 13  TALHIAV---SDGRSDIVLKLVESMGQNASNVLKLQNE-------KGNTALHLAAALGNA 62
           T L  A+   S GR+D +  L++ + +   N+ +  N        +G TALH+A      
Sbjct: 48  TCLPKALLNLSAGRNDTIPILLD-IAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106

Query: 63  AFVKI 67
            +V++
Sbjct: 107 HYVEL 111

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.5 bits (96), Expect = 2e-05
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           +  D+    A + GR++I+  +++       ++    N  G  AL  AA  G+   VK+
Sbjct: 70  SISDSPYLYAGAQGRTEILAYMLK---HATPDL-NKHNRYGGNALIPAAEKGHIDNVKL 124

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 8  TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          T      L  A       +  ++++         +   + +GNT L++A    +    K 
Sbjct: 3  TYEVGALLEAANQRDTKKVK-EILQDTTYQ----VDEVDTEGNTPLNIAVHNNDIEIAKA 57

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 35.9 bits (84), Expect = 7e-04
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 9  NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             +T L+IAV +   +I   L+   G +    + LQN   ++    A A G    +  
Sbjct: 37 TEGNTPLNIAVHNNDIEIAKALI-DRGAD----INLQNSISDSPYLYAGAQGRTEILAY 90

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
               TALH A       IV  LV   G N       Q+E G T + LAA  G    V  
Sbjct: 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSN----KDKQDEDGKTPIMLAAQEGRIEVVMY 331

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             SE +ALH A ++    +++ ++ S        ++  +  G TAL + A       V  
Sbjct: 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGD--IEELDRNGMTALMIVAHNEGRDQVAS 253

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             E+T L +AV   R  +V  L+   G +      + N+   +ALH AAA  +   +  
Sbjct: 164 CDENTPLMLAVLARRRRLVAYLM-KAGAD----PTIYNKSERSALHQAAANRDFGMMVY 217

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 3/63 (4%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNV---LKLQNEKGNTALHLAAALGNAAF 64
                T LH   S+  ++    L+    +        +   +   NT L LA        
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 181

Query: 65  VKI 67
           V  
Sbjct: 182 VAY 184

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 36.1 bits (84), Expect = 7e-04
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
                T + +A  +GR ++V+ L+   G +    ++  +   +TA  LA A  +   V I
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYLI-QQGAS----VEAVDATDHTARQLAQANNHHNIVDI 364

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 38.3 bits (90), Expect = 4e-05
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 5  AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF 64
          + + +     L  A   G+ D V +++ + G +    +  +++ G+T LHLAA  G+   
Sbjct: 18 SHMGSDLGKKLLEAARAGQDDEV-RILMANGAD----VAAKDKNGSTPLHLAARNGHLEV 72

Query: 65 VKI 67
          VK+
Sbjct: 73 VKL 75

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 6  KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
          K        L  +  +G  D+V +++        +   L N++G TALH A   G+   V
Sbjct: 32 KFNPLPLALLLDSSLEGEFDLVQRIIY----EVDDP-SLPNDEGITALHNAVCAGHTEIV 86

Query: 66 KI 67
          K 
Sbjct: 87 KF 88

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 11/58 (18%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEK---GNTALHLAAALGNAAFVKI 67
           TALH AV  G ++IV  LV+       NV    N     G T LH AA+  N    K 
Sbjct: 72  TALHNAVCAGHTEIVKFLVQ----FGVNV----NAADSDGWTPLHCAASCNNVQVCKF 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 38.9 bits (92), Expect = 5e-05
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             +  T L  AV       V  L+E    + ++   ++ + G  ++ LA ALG  +  ++
Sbjct: 99  DWNGGTPLLYAVHGNHVKCVKMLLE----SGADP-TIETDSGYNSMDLAVALGYRSVQQV 153

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 38.5 bits (91), Expect = 7e-05
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
               ++AL +A S G +DIV  L++         +   +  G T L  A    +   VK+
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLLD---CGVD--VNEYDWNGGTPLLYAVHGNHVKCVKM 120

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           ++H   + G    +   +E   Q     +   +E+G T L  AAA G  A V+ 
Sbjct: 5  LSVHQLAAQGEMLYLATRIE---QENV--INHTDEEGFTPLMWAAAHGQIAVVEF 54

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 36.6 bits (86), Expect = 3e-04
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          T L  A + G+  +V  L++    N ++  +L  +   +AL LA + G    VK+
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQ----NGADP-QLLGKGRESALSLACSKGYTDIVKM 87

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 38.9 bits (92), Expect = 6e-05
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
                T LH+A   G  ++V  L+        +V   Q++ G T +  A    +   VK+
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLS---NGQMDVNC-QDDGGWTPMIWATEYKHVDLVKL 129

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
               D+ LHIA  + R D V+  + S   +    + L+N++G T L  A+          
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFL-SRDSD----VTLKNKEGETPLQCASLNSQVWSALQ 228

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            N E+  LH A   G  DI   L+          L   N  G++ LH+AA       V +
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLA---AKCD--LHAVNIHGDSPLHIAARENRYDCVVL 195

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 37.8 bits (89), Expect = 8e-05
 Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 12 DTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          D     A+ +G  D V   V        +V     E G   LH AA  G    ++ 
Sbjct: 8  DKEFMWALKNGDLDEVKDYVA----KGEDV-NRTLEGGRKPLHYAADCGQLEILEF 58

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 37.8 bits (89), Expect = 1e-04
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 5   AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF 64
                +    +H A  +G  D ++ L       A   L +++  G   + LA  LG+   
Sbjct: 72  CADPATLTRPVHDAAREGFLDTLVVLHR---AGAR--LDVRDAWGRLPVDLAEELGHRDV 126

Query: 65  VKI 67
            + 
Sbjct: 127 ARY 129

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 6/60 (10%)

Query: 8  TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
                 L  A + GR + V  L+E     A+      N  G   + +   +G+A   ++
Sbjct: 9  MEPSADWLATAAARGRVEEVRALLE---AGAN--PNAPNSYGRRPIQV-MMMGSARVAEL 62

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 8  TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
               T LH A  + R D+V   +    + A  V +L  +  +T LH A   G+ + V  
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYIS---KGA-IVDQLGGDLNSTPLHWATRQGHLSMVVQ 94

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           TALH AV  G + ++  L+E     A+  +  QN KG +AL LA    N   +  
Sbjct: 179 TALHWAVLAGNTTVISLLLE---AGAN--VDAQNIKGESALDLAKQRKNVWMINH 228

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 36.6 bits (86), Expect = 4e-04
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN 61
           + +H+A   G + IV  L+ + GQ+    + + ++ G T L  AA   +
Sbjct: 111 SCIHLAAQFGHTSIVAYLI-AKGQD----VDMMDQNGMTPLMWAAYRTH 154

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 36.6 bits (86), Expect = 4e-04
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 5   AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF 64
               +   T LH A   G   +V++L++     A     L + +G + +HLAA  G+ + 
Sbjct: 70  QLGGDLNSTPLHWATRQGHLSMVVQLMK---YGAD--PSLIDGEGCSCIHLAAQFGHTSI 124

Query: 65  VKI 67
           V  
Sbjct: 125 VAY 127

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
              + T LH+A    R  IV  L+    Q+ ++V   +++ G   LH A + G+    ++
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLL----QHGADV-HAKDKGGLVPLHNACSYGHYEVTEL 109

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
              + T LH A S  R ++   L+      A     L N  G +A+ +A        +  
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLS---HGAD--PTLVNCHGKSAVDMAPTPELRERLTY 175

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 35.9 bits (84), Expect = 9e-04
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
                  LH A S G  ++   L++     A   +   +    T LH AA+        +
Sbjct: 88  DKGGLVPLHNACSYGHYEVTELLLK---HGAC--VNAMDLWQFTPLHEAASKNRVEVCSL 142

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            N   T LH AVS     +   L+      A+++   +   G T L LAA L     ++ 
Sbjct: 87  DNMGRTPLHAAVSADAQGVFQILIR---NRATDL-DARMHDGTTPLILAARLAVEGMLED 142

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 37.8 bits (89), Expect = 1e-04
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 5   AKITNSED----TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALG 60
           A + N  D    TALH+A    RSD   +L+     +A     +Q+  G T LH A +  
Sbjct: 47  ASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADA----NIQDNMGRTPLHAAVSAD 101

Query: 61  NAAFVKI 67
                +I
Sbjct: 102 AQGVFQI 108

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            +   +ALH A +    D  + L++    N +N   +QN +  T L LAA  G+    K+
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLK----NGANK-DMQNNREETPLFLAAREGSYETAKV 208

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 37.4 bits (88), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
              D+ LH A  +G  DIV  L+      AS      N  G   +         + + +
Sbjct: 74  YQNDSPLHDAAKNGHVDIVKLLLS---YGAS--RNAVNIFGLRPVDYTDDESMKSLLLL 127

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 35.5 bits (83), Expect = 7e-04
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 9  NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          ++  T LH A + G   +V  L++     A  V      + ++ LH AA  G+   VK+
Sbjct: 41 HAGWTPLHEACNHGHLKVVELLLQ---HKA-LV-NTTGYQNDSPLHDAAKNGHVDIVKL 94

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 35.1 bits (82), Expect = 8e-04
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          T LHIA   G    V  L++    N S+   +++  G T LH A   G+   V++
Sbjct: 12 TLLHIASIKGDIPSVEYLLQ----NGSDP-NVKDHAGWTPLHEACNHGHLKVVEL 61

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 36.6 bits (86), Expect = 1e-04
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          T LH+A  +G  ++V  L+   G +    +  +++ G T LHLAA  G+   VK+
Sbjct: 4  TPLHLAARNGHLEVVKLLL-EAGAD----VNAKDKNGRTPLHLAARNGHLEVVKL 53

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 35.0 bits (82), Expect = 5e-04
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 8  TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            +  T LH+A  +G  ++V  L+E      ++V   +++ G T LHLAA  G+   VK+
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLE----AGADVNA-KDKNGRTPLHLAARNGHLEVVKL 86

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 37.4 bits (88), Expect = 1e-04
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 5   AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF 64
                +    +H A  +G  D ++ L       A   L + +  G   + LA   G+   
Sbjct: 72  CADPATLTRPVHDAAREGFLDTLVVLHR---AGAR--LDVCDAWGRLPVDLAEEQGHRDI 126

Query: 65  VKI 67
            + 
Sbjct: 127 ARY 129

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           N   T LH AVS     +   L+      A+++   +   G T L LAA L     ++ 
Sbjct: 56  NMGRTPLHAAVSADAQGVFQILIR---NRATDLDA-RMHDGTTPLILAARLAVEGMLED 110

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 5  AKITNSED----TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALG 60
          A + N  D    TALH+A    RSD   +L+     +A N+   Q+  G T LH A +  
Sbjct: 15 ASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADA-NI---QDNMGRTPLHAAVSAD 69

Query: 61 NAAFVKI 67
               +I
Sbjct: 70 AQGVFQI 76

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 36.6 bits (86), Expect = 4e-04
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            +   +ALH A +    D  + L++    N +N   +QN +  T L LAA  G+    K+
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLK----NGANK-DMQNNREETPLFLAAREGSYETAKV 176

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 35.8 bits (84), Expect = 7e-04
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            +   T L +A       ++  L+     + ++V    ++ G +ALH AAA+ N     +
Sbjct: 89  MHDGTTPLILAARLAVEGMLEDLIN----SHADV-NAVDDLGKSALHWAAAVNNVDAAVV 143

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 5/81 (6%)

Query: 5   AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF 64
             +    +T LH   S    ++V  LV+     ++      +  G + L  A    N   
Sbjct: 125 IPVDEHGNTPLHWLTSIANLELVKHLVK---HGSN--RLYGDNMGESCLVKAVKSVNNYD 179

Query: 65  VKIGCLDIQSLNIKIKLLDIQ 85
                  +  L   + L D  
Sbjct: 180 SGTFEALLDYLYPCLILEDSM 200

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 36.2 bits (83), Expect = 7e-04
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAA 57
           ++ DT L+IA   G   IV  L++     A     + N+ G   +   A
Sbjct: 281 SNGDTCLNIAARLGNISIVDALLD---YGAD--PFIANKSGLRPVDFGA 324

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             S+ + +H A   G    +  L+    Q  +  + +      + LH A   G+ + VKI
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLIS---QGWA--VNIITADHVSPLHEACLGGHLSCVKI 110

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            +   + +H A   G  + V  L+       +  +  +     T L+LA      A VK 
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIA---YGGN--IDHKISHLGTPLYLACENQQRACVKK 208

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 36.3 bits (85), Expect = 5e-04
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            +   T L++A  + +   V KL+ES G + +     Q +  ++ LH      +     +
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLLES-GADVN-----QGKGQDSPLHAVVRTASEELACL 240

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 6   KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
            IT    + LH A   G    V  L++    + + V        +T L  A   G+   V
Sbjct: 87  IITADHVSPLHEACLGGHLSCVKILLK----HGAQV-NGVTADWHTPLFNACVSGSWDCV 141

Query: 66  KI 67
            +
Sbjct: 142 NL 143

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 35.9 bits (84), Expect = 7e-04
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN 61
             +D+ LH  V     ++   L++     A    + +N +G   + L      
Sbjct: 220 KGQDSPLHAVVRTASEELACLLMD---FGAD--TQAKNAEGKRPVELVPPESP 267

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 6/63 (9%)

Query: 5   AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF 64
                   T+ + AV      IV   +    +  S           + +H+    G+   
Sbjct: 123 FYGKTGWKTSFYHAVMLNDVSIVSYFLS---EIPSTF---DLAILLSCIHITIKNGHVDM 176

Query: 65  VKI 67
           + +
Sbjct: 177 MIL 179

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 12  DTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           +  LH A +   + IV  L+              ++KGNTAL+ A   GN   VK+
Sbjct: 63  EFPLHQAATLEDTKIVKILLF---SGLD--DSQFDDKGNTALYYAVDSGNMQTVKL 113

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 37.0 bits (87), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             S  + +H A   G  D +  LVE     A   + + +  G   +HLA   G+ A V  
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVE---HGAD--VNVPDGTGALPIHLAVQEGHTAVVSF 119

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 36.6 bits (86), Expect = 3e-04
 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAA 57
            L  A + G    V +L+     +        N  G TAL +  
Sbjct: 4  DRLSGAAARGDVQEVRRLLHRELVH----PDALNRFGKTALQVMM 44

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 36.2 bits (85), Expect = 4e-04
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             +    +H+AV +G + +V  L      +       ++ +G T L LA   G    V I
Sbjct: 98  DGTGALPIHLAVQEGHTAVVSFLAAESDLHR------RDARGLTPLELALQRGAQDLVDI 151

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 6   KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
            I      A  +A  +G   ++ +L E      + ++ +   +   A  LAA  G+   +
Sbjct: 123 VIQAENYQAFRLAAENGHLHVLNRLCE---LAPTEIMAMIQAENYHAFRLAAENGHLHVL 179

Query: 66  K 66
            
Sbjct: 180 N 180

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 3/57 (5%)

Query: 2   IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAA 58
              A I      A  +A  +G   ++ +L E      +    +   +   A   AA 
Sbjct: 154 EIMAMIQAENYHAFRLAAENGHLHVLNRLCE---LAPTEATAMIQAENYYAFRWAAV 207

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 9   NSEDTALHIAVSDGRSDIV--LKLVESM-GQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
                 +   + +   D    + L + +  Q+   +  ++++ G TAL           +
Sbjct: 112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEFVKRCQKPIAL 170

Query: 66  KI 67
           K+
Sbjct: 171 KM 172

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIG 68
           N     LH A S G  DI   L+       ++V    N +G+T L +A        ++  
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLI----SQGAHVGA-VNSEGDTPLDIAEEEAMEELLQN- 157

Query: 69  CLDIQSLNIKIKL 81
            ++ Q ++I+   
Sbjct: 158 EVNRQGVDIEAAR 170

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 35.9 bits (84), Expect = 7e-04
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           TALH A  D   D+V  LVE    N +N+    + +G   LH AA+ G     + 
Sbjct: 75  TALHQACIDDNVDMVKFLVE----NGANI-NQPDNEGWIPLHAAASCGYLDIAEY 124

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 35.9 bits (84), Expect = 9e-04
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 6  KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV 65
          K+   +      A S G ++ VL+L+E      +++    N  G TALH A    N   V
Sbjct: 35 KVKFDDGAVFLAACSSGDTEEVLRLLE----RGADI-NYANVDGLTALHQACIDDNVDMV 89

Query: 66 KI 67
          K 
Sbjct: 90 KF 91

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 35.8 bits (84), Expect = 4e-04
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             +  T LH+A  +G  ++V  L+E     A +V   +++ G T LHLAA  G+   VK+
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLE---AGA-DV-NAKDKNGRTPLHLAARNGHLEVVKL 119

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 35.8 bits (84), Expect = 5e-04
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 8/65 (12%)

Query: 5  AKITNSED--TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNA 62
               S+D  T LH A  +G ++ V K + S G +    +  +++ GNT LHLAA  G+A
Sbjct: 2  HMW-GSKDGNTPLHNAAKNGHAEEV-KKLLSKGAD----VNARSKDGNTPLHLAAKNGHA 55

Query: 63 AFVKI 67
            VK+
Sbjct: 56 EIVKL 60

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 35.8 bits (84), Expect = 6e-04
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 11/63 (17%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEK---GNTALHLAAALGNAAF 64
           T  + T LH+A S+G ++IV  L++    + ++V    N K     TALH A    +   
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLK----HGADV----NAKDMLKMTALHWATEHNHQEV 115

Query: 65  VKI 67
           V++
Sbjct: 116 VEL 118

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 35.8 bits (84), Expect = 6e-04
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             + TALH A      ++V +L+   G +    +  Q++   TA  ++   GN    +I
Sbjct: 98  MLKMTALHWATEHNHQEVV-ELLIKYGAD----VHTQSKFCKTAFDISIDNGNEDLAEI 151

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 36.1 bits (84), Expect = 6e-04
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           TALH A+      IV  L+       +NV    +  G T LH AA+  +      
Sbjct: 56  TALHNAICGANYSIVDFLIT----AGANVNS-PDSHGWTPLHCAASCNDTVICMA 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.85
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.83
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.83
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.82
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.81
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.81
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.81
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.8
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.8
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.8
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.8
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.79
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.79
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.79
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.79
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.79
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.79
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.79
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.79
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.79
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.78
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.78
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.78
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.78
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.78
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.78
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.78
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.78
2rfa_A	232	Transient receptor potential cation channel subfa	99.78
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.77
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.77
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.77
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.77
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.77
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.77
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.77
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.77
2etb_A	256	Transient receptor potential cation channel subfam	99.77
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.76
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.76
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.76
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.76
2rfa_A	232	Transient receptor potential cation channel subfa	99.76
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.76
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.76
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.76
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.76
2pnn_A	273	Transient receptor potential cation channel subfa	99.75
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.75
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.75
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.75
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.75
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.75
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.74
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.74
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.74
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.74
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.74
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.74
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.74
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.74
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.74
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.73
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.73
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.73
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.73
2etb_A	256	Transient receptor potential cation channel subfam	99.73
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.73
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.73
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.73
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.73
2pnn_A	273	Transient receptor potential cation channel subfa	99.73
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.73
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.73
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.73
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.72
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.72
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.72
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.72
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.72
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.72
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.72
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.71
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.71
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.71
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.71
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.7
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.69
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.69
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.69
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.69
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.68
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.68
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.67
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.67
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.66
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.64
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.63
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.62
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.59
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.56
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.55
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.54
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.54
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.54
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.48

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.89  E-value=1.1e-22  Score=118.41  Aligned_cols=94  Identities=19%  Similarity=0.214  Sum_probs=80.4

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      |+....|.+|+||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..
T Consensus        61 ad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga-----dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~  135 (169)
T 4gpm_A           61 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA-----DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSD  135 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             cchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCC
Confidence            4567788999999999999999999999999987     88999999999999999999999999887655443    45


Q ss_pred             CCcHHHHHHhcCchhhhHhhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      |.|||++|+..|+.+++++|..+
T Consensus       136 G~TpL~~A~~~g~~~iv~~Ll~~  158 (169)
T 4gpm_A          136 GRTPLDLAREHGNEEVVKLLEKQ  158 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC
Confidence            57999999999999999988543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=2.3e-21  Score=102.40  Aligned_cols=86  Identities=23%  Similarity=0.288  Sum_probs=75.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHHHH
Q 043593           10 SEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLDIQ   85 (103)
Q Consensus        10 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~~A   85 (103)
                      +|+||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..++.+++++|...++..    ..+.||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A   75 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA-----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA   75 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCC-----CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            58999999999999999999999998     89999999999999999999999999987665443    4567999999


Q ss_pred             HhcCchhhhHhhhhh
Q 043593           86 SLNIKFKILDIQSLN  100 (103)
Q Consensus        86 ~~~~~~~~~~~~~~~  100 (103)
                      +..|+.+++++|-.+
T Consensus        76 ~~~~~~~~~~~Ll~~   90 (93)
T 1n0q_A           76 ARNGHLEVVKLLLEA   90 (93)
T ss_dssp             HHTTCHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHc
Confidence            999999999988543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.85  E-value=1e-20  Score=110.04  Aligned_cols=92  Identities=20%  Similarity=0.199  Sum_probs=83.3

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      |+.+..|.+|+||||+|+..++.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..
T Consensus        28 advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga-----d~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~  102 (169)
T 4gpm_A           28 ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA-----DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD  102 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc-----chhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC
Confidence            5677899999999999999999999999999998     89999999999999999999999999987665443    45


Q ss_pred             CCcHHHHHHhcCchhhhHhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      |.||||+|+..|+.+++++|-
T Consensus       103 G~TpLh~A~~~g~~~~v~~Ll  123 (169)
T 4gpm_A          103 GRTPLHHAAENGHKEVVKLLI  123 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHH
Confidence            679999999999999999883

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.83  E-value=4.4e-20  Score=103.43  Aligned_cols=93  Identities=20%  Similarity=0.170  Sum_probs=81.1

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ++....|..|+||||+|+..++.+++++|++.+.     +++..|..|.||||+|+..++.+++++|+..+...    ..
T Consensus        38 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  112 (136)
T 2jab_A           38 ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA-----DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF  112 (136)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCC
Confidence            3456788999999999999999999999999987     78999999999999999999999999987665443    35


Q ss_pred             CCcHHHHHHhcCchhhhHhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      +.|||++|+..++.+++++|..
T Consensus       113 g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A          113 GKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHH
Confidence            6799999999999999998853

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.83  E-value=3.2e-20  Score=100.82  Aligned_cols=90  Identities=22%  Similarity=0.209  Sum_probs=77.1

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      ....|.+|.|+||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..+.
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~   91 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGA-----DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK   91 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCC-----CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Confidence            45678999999999999999999999999987     89999999999999999999999999987665443    3557


Q ss_pred             cHHHHHHhcCchhhhHhhh
Q 043593           80 KLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~~   98 (103)
                      |||++|+..|+.+++++|+
T Consensus        92 tpl~~A~~~~~~~~~~~L~  110 (110)
T 2zgd_A           92 TAFDISIDNGNEDLAEILQ  110 (110)
T ss_dssp             CHHHHHHHHTCHHHHHHHC
T ss_pred             cHHHHHHHcCCHHHHHHhC
Confidence            9999999999999999874

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.83  E-value=6.8e-20  Score=104.33  Aligned_cols=89  Identities=22%  Similarity=0.194  Sum_probs=50.0

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      ....|..|+||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..++.+++++|...++..    ..+.
T Consensus        60 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  134 (153)
T 1awc_B           60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGA-----DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCK  134 (153)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence            34455556666666666666666666665554     55555556666666666666666666554433222    2334


Q ss_pred             cHHHHHHhcCchhhhHhh
Q 043593           80 KLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~   97 (103)
                      ||+++|+..|+.+++++|
T Consensus       135 t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          135 TAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHh
Confidence            666666666666665554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.82  E-value=1.2e-19  Score=103.41  Aligned_cols=92  Identities=21%  Similarity=0.213  Sum_probs=73.4

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ++....|..|.||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|+..|+.+++++|... ...    ..
T Consensus        59 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~  132 (156)
T 1bd8_A           59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA-----DVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDAR  132 (156)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTT
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC-----CCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCC
Confidence            3456678888888888888888888888888886     7888888888888888888888888887654 222    34


Q ss_pred             CCcHHHHHHhcCchhhhHhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      +.|||++|+..|+.+++++|-.
T Consensus       133 g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          133 GLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             SCCHHHHHHHSCCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHh
Confidence            5688888888888888887743

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.81  E-value=2.4e-19  Score=102.59  Aligned_cols=94  Identities=20%  Similarity=0.203  Sum_probs=79.5

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc-----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS-----LN   76 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~-----~~   76 (103)
                      ++....|..|+||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|...+..     ..
T Consensus        61 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  135 (162)
T 1ihb_A           61 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA-----DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH  135 (162)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCC
Confidence            3456778899999999999999999999999987     7889999999999999999999999988765443     23


Q ss_pred             cCCcHHHHHHhcCchhhhHhhhhh
Q 043593           77 IKIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        77 ~~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      .+.|||++|+..|+.+++++|-.+
T Consensus       136 ~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A          136 KGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHh
Confidence            557999999999999999988543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.81  E-value=2.9e-19  Score=100.04  Aligned_cols=88  Identities=20%  Similarity=0.140  Sum_probs=76.3

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcH
Q 043593            6 KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKL   81 (103)
Q Consensus         6 ~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tp   81 (103)
                      ..|.+|+||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..++.+++++++..+...    ..+.||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGS-----DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            578899999999999999999999999987     78889999999999999999999999887655433    345699


Q ss_pred             HHHHHhcCchhhhHhhh
Q 043593           82 LDIQSLNIKFKILDIQS   98 (103)
Q Consensus        82 l~~A~~~~~~~~~~~~~   98 (103)
                      ||+|+..++.+++++|-
T Consensus        80 L~~A~~~~~~~~v~~Ll   96 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLL   96 (137)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHH
Confidence            99999999999999884

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.81  E-value=8.1e-20  Score=102.34  Aligned_cols=90  Identities=16%  Similarity=0.112  Sum_probs=53.9

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ++....|..|.||||+|+..|+.+++++|++.+.     +++.++..|.||||+|+. ++.+++++|+..+...    ..
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~   76 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGA-----DPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPA   76 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTT
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCC-----CcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCC
Confidence            3455566666666666666666666666666665     556666666666666666 6666666655433222    23


Q ss_pred             -CCcHHHHHHhcCchhhhHhh
Q 043593           78 -KIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        78 -~~tpl~~A~~~~~~~~~~~~   97 (103)
                       +.||||+|+..|+.+++++|
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~L   97 (136)
T 1d9s_A           77 TLTRPVHDAAREGFLDTLVVL   97 (136)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHH
Confidence             45666666666666666655

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.81  E-value=3e-19  Score=110.82  Aligned_cols=91  Identities=30%  Similarity=0.262  Sum_probs=80.9

Q ss_pred             ccCCCCCCcHHHHHHHc---CCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            5 AKITNSEDTALHIAVSD---GRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      +..|..|.||||+|+..   ++.+++++|++.|.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..
T Consensus       163 ~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga-----~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~  237 (278)
T 1dcq_A          163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-----NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES  237 (278)
T ss_dssp             SSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             cccccCCCCcchHHHHhcccchHHHHHHHHHCCC-----CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCC
Confidence            34578899999999999   89999999999998     89999999999999999999999999988765544    35


Q ss_pred             CCcHHHHHHhcCchhhhHhhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      |.||||+|+..|+.+++++|...
T Consensus       238 g~tpL~~A~~~~~~~~v~~Ll~~  260 (278)
T 1dcq_A          238 GETPLDIAKRLKHEHCEELLTQA  260 (278)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc
Confidence            67999999999999999998543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.81  E-value=4.6e-20  Score=103.34  Aligned_cols=93  Identities=10%  Similarity=-0.022  Sum_probs=81.9

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccC-CChHHHHHHHcCCHHHHhhhhhhhhcc----c
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEK-GNTALHLAAALGNAAFVKIGCLDIQSL----N   76 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-g~tpl~~a~~~~~~~~~~~l~~~~~~~----~   76 (103)
                      ++....|..|+||||+|+. ++.+++++|++.+.     +++.+|.. |.||||+|+..|+.+++++|+..++..    .
T Consensus        36 ~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~  109 (136)
T 1d9s_A           36 ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGA-----EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA  109 (136)
T ss_dssp             CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC-----CSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSS
T ss_pred             CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC-----CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence            3466789999999999999 99999999999998     89999999 999999999999999999988765443    3


Q ss_pred             cCCcHHHHHHhcCchhhhHhhhhh
Q 043593           77 IKIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        77 ~~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      .+.|||++|+..++.+++++|-.+
T Consensus       110 ~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A          110 WGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             SSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc
Confidence            557999999999999999988543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=1.7e-19  Score=98.29  Aligned_cols=89  Identities=25%  Similarity=0.251  Sum_probs=79.9

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcH
Q 043593            6 KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKL   81 (103)
Q Consensus         6 ~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tp   81 (103)
                      ..|.+|+||||+|+..|+.+++++|++.+.     +++..|..|.||||+|+..++.+++++|+..+...    ..+.||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tp   78 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGA-----DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTP   78 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTC-----CSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCH
Confidence            478999999999999999999999999987     78999999999999999999999999987765443    346799


Q ss_pred             HHHHHhcCchhhhHhhhh
Q 043593           82 LDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        82 l~~A~~~~~~~~~~~~~~   99 (103)
                      |++|+..++.+++++|-.
T Consensus        79 l~~A~~~~~~~~~~~Ll~   96 (115)
T 2l6b_A           79 EHLAKKNGHHEIVKLLDA   96 (115)
T ss_dssp             THHHHTTTCHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHH
Confidence            999999999999999854

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.80  E-value=7.3e-19  Score=102.32  Aligned_cols=91  Identities=20%  Similarity=0.142  Sum_probs=78.2

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      ....|..|+||||+|+..|+.+++++|++.+.     +++..+..|.||||+|+..|+.+++++|+..+...    ..+.
T Consensus        32 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  106 (179)
T 3f6q_A           32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-----RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN  106 (179)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC
Confidence            46678899999999999999999999999987     78889999999999999999999999887655443    3457


Q ss_pred             cHHHHHHhcCchhhhHhhhh
Q 043593           80 KLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~~~   99 (103)
                      ||||+|+..++.+++++|-.
T Consensus       107 t~L~~A~~~~~~~~v~~Ll~  126 (179)
T 3f6q_A          107 VPLHYACFWGQDQVAEDLVA  126 (179)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999988843

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.80  E-value=5.8e-19  Score=109.18  Aligned_cols=91  Identities=24%  Similarity=0.227  Sum_probs=80.6

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhh-hhhcc----ccC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCL-DIQSL----NIK   78 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~-~~~~~----~~~   78 (103)
                      ....|..|+||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|+..|+.+++++|+. .++..    ..|
T Consensus       176 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga-----d~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g  250 (276)
T 4hbd_A          176 NAKASQAGQTALMLAVSHGRVDVVKALLACEA-----DVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG  250 (276)
T ss_dssp             TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTS
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCC-----CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCC
Confidence            45567889999999999999999999999998     899999999999999999999999999876 44333    456


Q ss_pred             CcHHHHHHhcCchhhhHhhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      .|||++|+..|+.+++++|--
T Consensus       251 ~TpL~~A~~~g~~~iv~~Ll~  271 (276)
T 4hbd_A          251 STALMVALDAGQSEIASMLYS  271 (276)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHh
Confidence            799999999999999999843

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.80  E-value=5.8e-19  Score=102.03  Aligned_cols=88  Identities=18%  Similarity=0.001  Sum_probs=54.3

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      ...|..|+||||+|+..|+.+++++|++.+.     +++..+..|.||||+|+..++.++++++...+...    ..+.|
T Consensus        30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  104 (172)
T 3v30_A           30 NKPDERGFTPLIWASAFGEIETVRFLLEWGA-----DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGT  104 (172)
T ss_dssp             GCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            4456666666666666666666666666665     56666666666666666666666666655443332    23456


Q ss_pred             HHHHHHhcCchhhhHhh
Q 043593           81 LLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~   97 (103)
                      |||+|+..|+.+++++|
T Consensus       105 ~L~~A~~~~~~~~v~~L  121 (172)
T 3v30_A          105 PLLYAVRGNHVKCVEAL  121 (172)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHH
Confidence            66666666666666655

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.80  E-value=5.6e-19  Score=103.74  Aligned_cols=88  Identities=18%  Similarity=0.096  Sum_probs=42.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      ...|..|.||||+|+..++.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..+.|
T Consensus        95 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t  169 (192)
T 2rfm_A           95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA-----NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLT  169 (192)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCB
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            3344445555555555555555555555544     44445555555555555555555555444332222    22335


Q ss_pred             HHHHHHhcCchhhhHhh
Q 043593           81 LLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~   97 (103)
                      |+++|+..|+.+++++|
T Consensus       170 ~l~~A~~~~~~~~v~~L  186 (192)
T 2rfm_A          170 AEASARIFGRQEVIKIF  186 (192)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHH
Confidence            55555555555555544

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.79  E-value=3.1e-19  Score=102.55  Aligned_cols=90  Identities=19%  Similarity=0.203  Sum_probs=70.5

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      ....|..|+||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..++.+++++|...+...    ..+.
T Consensus        35 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  109 (165)
T 3twr_A           35 CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA-----DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF  109 (165)
T ss_dssp             CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             ccccccCCCCHHHHHHHcChHHHHHHHHhcCC-----CCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCC
Confidence            34566778888888888888888888888887     78888888888888888888888888876654433    3456


Q ss_pred             cHHHHHHhcCchhhhHhhh
Q 043593           80 KLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~~   98 (103)
                      ||||+|+..|+.+++++|-
T Consensus       110 t~L~~A~~~~~~~~v~~Ll  128 (165)
T 3twr_A          110 TPLHEAAAKGKYEICKLLL  128 (165)
T ss_dssp             CHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHH
Confidence            8888888888888888773

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.79  E-value=1.2e-18  Score=100.62  Aligned_cols=88  Identities=22%  Similarity=0.229  Sum_probs=48.0

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      ...|..|.||||+|+..|+.+++++|++.+.     +++..+..|.||||+|+..|+.+++++|...+...    ..+.|
T Consensus        41 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  115 (169)
T 2y1l_E           41 NAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-----DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHT  115 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            4455555666666666666666665655554     45555555555565555555555555554433222    22345


Q ss_pred             HHHHHHhcCchhhhHhh
Q 043593           81 LLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~   97 (103)
                      |||+|+..++.+++++|
T Consensus       116 ~L~~A~~~~~~~~v~~L  132 (169)
T 2y1l_E          116 PLHLAAMFGHLEIVEVL  132 (169)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHH
Confidence            55555555555555554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.79  E-value=1e-18  Score=100.59  Aligned_cols=88  Identities=18%  Similarity=0.048  Sum_probs=42.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      ...|..|+||||+|+..|+.+++++|++.+.     +++..+..|.||||+|+..++.++++++...+...    ..+.|
T Consensus        30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  104 (167)
T 3v31_A           30 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA-----DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT  104 (167)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC-----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCC
Confidence            3444555555555555555555555555544     44445555555555555555555555444332221    12335


Q ss_pred             HHHHHHhcCchhhhHhh
Q 043593           81 LLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~   97 (103)
                      |||+|+..|+.+++++|
T Consensus       105 ~L~~A~~~~~~~~v~~L  121 (167)
T 3v31_A          105 PLLYAVHGNHVKCVKML  121 (167)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHH
Confidence            55555555555555444

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.79  E-value=8.3e-20  Score=102.28  Aligned_cols=94  Identities=19%  Similarity=0.144  Sum_probs=80.6

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ++....|..|+||||+|+..++.+++++|++.+.     +++.+|..|.||||+|+..++.+++++|+..++..    ..
T Consensus        34 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  108 (137)
T 3c5r_A           34 SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA-----LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF  108 (137)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----cccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence            3456788999999999999999999999999998     89999999999999999999999999987655443    45


Q ss_pred             CCcHHHHHHhcCchhhhHhhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      +.||+++|...+..+++.+++.+
T Consensus       109 g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A          109 GLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             SCCGGGGCCCHHHHHHHSCC---
T ss_pred             CCCHHHHHhhccHHHHHhhcccc
Confidence            57999999999888888887655

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.79  E-value=1.4e-18  Score=99.75  Aligned_cols=94  Identities=21%  Similarity=0.085  Sum_probs=81.6

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ++....|..|+||||+|+..++.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..
T Consensus        66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  140 (165)
T 3twr_A           66 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA-----VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD  140 (165)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Confidence            3466789999999999999999999999999998     89999999999999999999999999987665443    45


Q ss_pred             CCcHHHHHHhcCchhhhHhhhhhc
Q 043593           78 KIKLLDIQSLNIKFKILDIQSLNI  101 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~~~  101 (103)
                      +.||+++|.. ++.+++++|.-++
T Consensus       141 g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A          141 GNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             SCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             CCChhHhHhc-CChHHHHHHhhcc
Confidence            5799999876 8899999987654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.79  E-value=1.3e-18  Score=100.12  Aligned_cols=94  Identities=17%  Similarity=0.108  Sum_probs=82.9

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ++....|..|.||||+|+..++.+++++|++.+.     +++.+|..|.||||+|+..|+.++++++...+...    ..
T Consensus        60 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  134 (167)
T 3v31_A           60 ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV-----DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS  134 (167)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCC-----CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            3456788999999999999999999999999998     89999999999999999999999999987655443    45


Q ss_pred             CCcHHHHHHhcCchhhhHhhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      +.||+++|+..|+.++++++.-+
T Consensus       135 g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A          135 GYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHH
Confidence            57999999999999999998543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.79  E-value=2e-18  Score=94.80  Aligned_cols=93  Identities=22%  Similarity=0.263  Sum_probs=79.0

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      +....|..|.||||.|+..++.+++++|++.+.     +++.++..|.||||+|+..++.++++++...+...    ..+
T Consensus        27 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  101 (126)
T 1n0r_A           27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG  101 (126)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC-----CCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCC
Confidence            456678899999999999999999999999987     78889999999999999999999999887655443    345


Q ss_pred             CcHHHHHHhcCchhhhHhhhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      .|||++|+..++.+++++|-.+
T Consensus       102 ~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A          102 RTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHc
Confidence            7999999999999999987543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.79  E-value=8.3e-19  Score=96.61  Aligned_cols=87  Identities=18%  Similarity=0.143  Sum_probs=62.1

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHH
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLL   82 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl   82 (103)
                      .+..|.||||.|+..|+.+++++|++.+.     +++..|..|.||||+|+..++.+++++|+..+...    ..+.|||
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL   77 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGE-----DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL   77 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTC-----CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCC-----CcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHH
Confidence            35567788888888888888888888776     67777777888888888888888887776554332    3456888


Q ss_pred             HHHHhcCchhhhHhhh
Q 043593           83 DIQSLNIKFKILDIQS   98 (103)
Q Consensus        83 ~~A~~~~~~~~~~~~~   98 (103)
                      |+|+..++.+++++|-
T Consensus        78 ~~A~~~~~~~~v~~Ll   93 (123)
T 3aaa_C           78 LSAVYEGHVSCVKLLL   93 (123)
T ss_dssp             HHHHHHTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHH
Confidence            8888888888777763

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.79  E-value=1.8e-18  Score=99.98  Aligned_cols=94  Identities=18%  Similarity=0.132  Sum_probs=83.2

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ++....|..|.||||+|+..++.+++++|++.+.     +++.+|..|.||||+|+..++.+++++|+..++..    ..
T Consensus        60 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  134 (172)
T 3v30_A           60 ADPHILAKERESALSLASTGGYTDIVGLLLERDV-----DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADS  134 (172)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCC
Confidence            4566789999999999999999999999999998     89999999999999999999999999987765444    34


Q ss_pred             CCcHHHHHHhcCchhhhHhhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      +.|||++|+..++.+++++|..+
T Consensus       135 g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A          135 GYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHhCcHHHHHHHHHH
Confidence            57999999999999999998543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.78  E-value=2e-19  Score=99.16  Aligned_cols=87  Identities=15%  Similarity=0.079  Sum_probs=73.5

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      +....|..|+||||+|+..++.+++++|++.+.     +++.+|..|.||||+|+..++.+++++|+..++..    ..+
T Consensus        32 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  106 (123)
T 3aaa_C           32 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA-----DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG  106 (123)
T ss_dssp             CTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-----CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            456788999999999999999999999999997     89999999999999999999999999987665443    455


Q ss_pred             CcHHHHHHhcCchhhhHhh
Q 043593           79 IKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~   97 (103)
                      .||+++|..   .++.+++
T Consensus       107 ~t~l~~A~~---~~~~~ll  122 (123)
T 3aaa_C          107 LTAFEATDN---QAIKALL  122 (123)
T ss_dssp             CCHHHHCCC---HHHHHHH
T ss_pred             CCHHHHhCC---HHHHHHh
Confidence            799999954   4444443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.78  E-value=2.1e-18  Score=99.59  Aligned_cols=93  Identities=22%  Similarity=0.236  Sum_probs=81.8

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ++....|..|.||||+|+..|+.+++++|++.+.     +++..|..|.||||+|+..++.+++++|...++..    ..
T Consensus        71 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  145 (169)
T 2y1l_E           71 ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA-----DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF  145 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            3456788999999999999999999999999998     78999999999999999999999999987765443    45


Q ss_pred             CCcHHHHHHhcCchhhhHhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      +.||+++|+..|+.+++++|..
T Consensus       146 g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          146 GKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCHHHHHHHhCCHHHHHHHHH
Confidence            5799999999999999998853

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.78  E-value=4.5e-19  Score=107.26  Aligned_cols=90  Identities=16%  Similarity=0.055  Sum_probs=61.0

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc-----cc
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL-----NI   77 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~-----~~   77 (103)
                      +.+..|..|+||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|+..|+.+++++|+..++..     ..
T Consensus        46 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga-----~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~  120 (229)
T 2vge_A           46 DPSQPNEEGITALHNAICGANYSIVDFLITAGA-----NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD  120 (229)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSST
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCC
Confidence            345566777777777777777777777777765     66777777777777777777777777765544332     24


Q ss_pred             CCcHHHHH--HhcCchhhhHhh
Q 043593           78 KIKLLDIQ--SLNIKFKILDIQ   97 (103)
Q Consensus        78 ~~tpl~~A--~~~~~~~~~~~~   97 (103)
                      +.|||++|  +..|+.+++++|
T Consensus       121 g~tpL~~A~a~~~~~~~~v~~L  142 (229)
T 2vge_A          121 GATAFEKCDPYREGYADCATYL  142 (229)
T ss_dssp             TCCTGGGCCTTSTTHHHHHHHH
T ss_pred             CCCHHHHHHHHhcChHHHHHHH
Confidence            45777777  667777777666

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.78  E-value=1.4e-18  Score=105.93  Aligned_cols=93  Identities=20%  Similarity=0.220  Sum_probs=74.7

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ++....|..|+||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..
T Consensus       148 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-----~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~  222 (253)
T 1yyh_A          148 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA-----NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM  222 (253)
T ss_dssp             CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccC
Confidence            3456678888888888888888888888888887     78888888888888888888888888877665443    34


Q ss_pred             CCcHHHHHHhcCchhhhHhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      +.||+++|+..|+.++++++..
T Consensus       223 g~tpl~~A~~~g~~~i~~~l~~  244 (253)
T 1yyh_A          223 DRLPRDIAQERMHHDIVRLLDL  244 (253)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH
Confidence            5688888888888888888754

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.78  E-value=1.5e-18  Score=98.73  Aligned_cols=88  Identities=17%  Similarity=0.160  Sum_probs=78.6

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHH
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLL   82 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl   82 (103)
                      .|..|.||||+|+..|+.+++++|++.+.     +++.++..|.||||+|+..|+.++++++...+...    ..+.|||
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  104 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGV-----SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTAL  104 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTC-----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            57889999999999999999999999987     78999999999999999999999999987665443    3457999


Q ss_pred             HHHHhcCchhhhHhhhh
Q 043593           83 DIQSLNIKFKILDIQSL   99 (103)
Q Consensus        83 ~~A~~~~~~~~~~~~~~   99 (103)
                      |+|+..|+.+++++|-.
T Consensus       105 ~~A~~~~~~~~v~~Ll~  121 (153)
T 1awc_B          105 HWATEHNHQEVVELLIK  121 (153)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHH
Confidence            99999999999998843

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.78  E-value=2.2e-18  Score=101.19  Aligned_cols=90  Identities=18%  Similarity=0.052  Sum_probs=65.2

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      ....|..|+||||+|+..++.+++++|++.+.     +++.+|..|.||||+|+..++.++++++...+...    ..+.
T Consensus        61 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  135 (192)
T 2rfm_A           61 LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS-----NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE  135 (192)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCC
T ss_pred             cccccccCccHHHHHHHcCCHHHHHHHHHCCC-----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            45566777788888877777777777777776     67777777778888888777777777766554433    3345


Q ss_pred             cHHHHHHhcCchhhhHhhh
Q 043593           80 KLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~~   98 (103)
                      ||||+|+..|+.+++++|-
T Consensus       136 t~L~~A~~~~~~~~v~~Ll  154 (192)
T 2rfm_A          136 TPLIVASKYGRSEIVKKLL  154 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHH
Confidence            7888888777777777763

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.78  E-value=8.7e-19  Score=106.28  Aligned_cols=92  Identities=22%  Similarity=0.089  Sum_probs=75.7

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccc----c
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLN----I   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~----~   77 (103)
                      ++.+..|..|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|+..++..+    .
T Consensus        61 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-----~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  135 (239)
T 1ycs_B           61 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV-----NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS  135 (239)
T ss_dssp             SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCC
Confidence            3456778889999999999999999999999887     788889999999999999999999998876654442    3


Q ss_pred             CC-cHHHHH--HhcCchhhhHhhh
Q 043593           78 KI-KLLDIQ--SLNIKFKILDIQS   98 (103)
Q Consensus        78 ~~-tpl~~A--~~~~~~~~~~~~~   98 (103)
                      +. ||+|+|  +..|+.+++++|-
T Consensus       136 ~~~t~l~~a~~~~~g~~~~~~~Ll  159 (239)
T 1ycs_B          136 DMQTAADKCEEMEEGYTQCSQFLY  159 (239)
T ss_dssp             SCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             CCcchHHHHHHhhhccHHHHHHHH
Confidence            33 999998  6788888888874

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.78  E-value=1.7e-18  Score=106.26  Aligned_cols=92  Identities=28%  Similarity=0.233  Sum_probs=79.8

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      ...|.+|+||||+|+..|+.+++++|++.+....  .++.++..|.||||+|+..|+.+++++|+..++..    ..+.|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t   80 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE--YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT   80 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG--GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--cccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            5689999999999999999999999999987110  17888999999999999999999999988766554    35579


Q ss_pred             HHHHHHhcCchhhhHhhh
Q 043593           81 LLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~~   98 (103)
                      |||+|+..|+.+++++|-
T Consensus        81 pL~~A~~~~~~~~v~~Ll   98 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLL   98 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHS
T ss_pred             HHHHHHHcCCcchhHhhh
Confidence            999999999999999884

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.78  E-value=3e-18  Score=102.99  Aligned_cols=97  Identities=20%  Similarity=0.132  Sum_probs=76.6

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccc-----
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLN-----   76 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~-----   76 (103)
                      ++....|.+|+||||+|+..|+.+++++|++.+........+..|..|.||||+|+..|+.+++++|+..+...+     
T Consensus        28 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  107 (232)
T 2rfa_A           28 CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATG  107 (232)
T ss_dssp             SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCS
T ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCC
Confidence            345678899999999999999999999999998621000115667789999999999999999998876544432     


Q ss_pred             ------------cCCcHHHHHHhcCchhhhHhhh
Q 043593           77 ------------IKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        77 ------------~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                                  .+.||||+|+..|+.+++++|-
T Consensus       108 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  141 (232)
T 2rfa_A          108 SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI  141 (232)
T ss_dssp             GGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHH
T ss_pred             cceeecccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                        3679999999999999998874

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.77  E-value=1.8e-18  Score=98.50  Aligned_cols=90  Identities=16%  Similarity=0.175  Sum_probs=80.4

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      .....|..|.||||+ +..|+.+++++|++.|.     +++.+|..|.||||+|+..|+.++++++...+...    ..+
T Consensus        28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  101 (156)
T 1bd8_A           28 HPDALNRFGKTALQV-MMFGSTAIALELLKQGA-----SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTG  101 (156)
T ss_dssp             CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCC-----CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCC
Confidence            456788999999999 99999999999999997     89999999999999999999999999987765443    356


Q ss_pred             CcHHHHHHhcCchhhhHhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~   98 (103)
                      .||||+|+..|+.+++++|-
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll  121 (156)
T 1bd8_A          102 ALPIHLAVQEGHTAVVSFLA  121 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHH
T ss_pred             CcHHHHHHHhChHHHHHHHH
Confidence            79999999999999999884

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.77  E-value=2.3e-18  Score=100.70  Aligned_cols=82  Identities=21%  Similarity=0.157  Sum_probs=61.7

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccc-cCCChHHHHHHHcCCHHHHhhhhhhhhcc----c
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQN-EKGNTALHLAAALGNAAFVKIGCLDIQSL----N   76 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~   76 (103)
                      ++.+..|..|+||||+|+..|+.+++++|++.+.     +++.++ ..|.||||+|+..|+.+++++|+..++..    .
T Consensus        67 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-----~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~  141 (183)
T 3deo_A           67 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA-----DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE  141 (183)
T ss_dssp             SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCC
Confidence            3456678888888888888888888888888887     677777 77888888888888888888876554433    3


Q ss_pred             cCCcHHHHHHhc
Q 043593           77 IKIKLLDIQSLN   88 (103)
Q Consensus        77 ~~~tpl~~A~~~   88 (103)
                      .+.|||++|+..
T Consensus       142 ~g~tpl~~A~~~  153 (183)
T 3deo_A          142 RGLTALELAREI  153 (183)
T ss_dssp             TSCCHHHHHHHH
T ss_pred             CCCCHHHHHHHh
Confidence            445777777654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.77  E-value=3.3e-18  Score=104.39  Aligned_cols=87  Identities=21%  Similarity=0.202  Sum_probs=75.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH---hcCcCchhhhcccccCCChHHHHHHHcCC---------HHHHhhhhhhhh---
Q 043593            9 NSEDTALHIAVSDGRSDIVLKLVE---SMGQNASNVLKLQNEKGNTALHLAAALGN---------AAFVKIGCLDIQ---   73 (103)
Q Consensus         9 ~~g~t~lh~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~g~tpl~~a~~~~~---------~~~~~~l~~~~~---   73 (103)
                      ..|+||||+|+..|+.+++++|++   .+.     +++.+|..|.||||+|+..++         .+++++|+..++   
T Consensus       138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga-----~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~  212 (260)
T 3jxi_A          138 YFGELPLSLAACTNQPHIVHYLTENGHKQA-----DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF  212 (260)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCC-----CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCC-----CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence            689999999999999999999999   777     899999999999999998777         688888766543   


Q ss_pred             --------ccccCCcHHHHHHhcCchhhhHhhhhh
Q 043593           74 --------SLNIKIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        74 --------~~~~~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                              ....+.||||+|+..|+.+++++|--+
T Consensus       213 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  247 (260)
T 3jxi_A          213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR  247 (260)
T ss_dssp             TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence                    334567999999999999999988443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.77  E-value=3.7e-18  Score=104.77  Aligned_cols=92  Identities=20%  Similarity=0.098  Sum_probs=80.6

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhccccc-CCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNE-KGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      .....|..|.||||+|+..|+.+++++|++.|.     +++.++. .|.||||+|+..|+.+++++|+..++..    ..
T Consensus       150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~  224 (282)
T 1oy3_D          150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA-----DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG  224 (282)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC-----CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC-----CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Confidence            356788999999999999999999999999998     7888875 4999999999999999999988765544    34


Q ss_pred             CCcHHHHHHhcCchhhhHhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      |.||||+|+..|+.+++++|-.
T Consensus       225 g~tpL~~A~~~~~~~~v~~Ll~  246 (282)
T 1oy3_D          225 GRTPLGSALLRPNPILARLLRA  246 (282)
T ss_dssp             SCCHHHHHHTSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCcHHHHHHHH
Confidence            5799999999999999999843

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.77  E-value=1.9e-18  Score=114.33  Aligned_cols=87  Identities=23%  Similarity=0.244  Sum_probs=79.0

Q ss_pred             CCCCCcHHHHHHH---cCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            8 TNSEDTALHIAVS---DGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         8 d~~g~t~lh~a~~---~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      |..|+||||+|+.   .|+.+++++|++.|.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..|.|
T Consensus       168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga-----~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t  242 (497)
T 3lvq_E          168 QAPEELVLHLAVKVANQASLPLVDFIIQNGG-----HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGET  242 (497)
T ss_dssp             CCSCBCHHHHHHHTCCTTTHHHHHHHHHHSC-----CTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCC
T ss_pred             ccccchHHHHHHHhcccccHHHHHHHHHcCC-----CCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence            8899999999977   899999999999998     89999999999999999999999999988766554    45579


Q ss_pred             HHHHHHhcCchhhhHhhhh
Q 043593           81 LLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~~~   99 (103)
                      |||+|+..|+.+++++|-.
T Consensus       243 pl~~A~~~~~~~~~~~Ll~  261 (497)
T 3lvq_E          243 ALDIARKKHHKECEELLEQ  261 (497)
T ss_dssp             HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999854

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.77  E-value=3.8e-18  Score=100.50  Aligned_cols=92  Identities=16%  Similarity=0.136  Sum_probs=75.2

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhh-----hcccc
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDI-----QSLNI   77 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~-----~~~~~   77 (103)
                      +....|.+|+||||+|+..|+.+++++|++.|.     +++..+..|.||||+|+..|+.++++++....     .....
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  105 (201)
T 3hra_A           31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA-----DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY  105 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTT
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCC
Confidence            456778889999999999999999999999987     78888899999999999999999998876322     22234


Q ss_pred             CCcHHHHHHhcCchhhhHhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      +.||||+|+..|+.+++++|-.
T Consensus       106 g~t~L~~A~~~~~~~~v~~Ll~  127 (201)
T 3hra_A          106 GGNALIPAAEKGHIDNVKLLLE  127 (201)
T ss_dssp             SCCSHHHHHHTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHH
Confidence            5689999999999888888743

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.77  E-value=1.5e-18  Score=99.25  Aligned_cols=91  Identities=15%  Similarity=0.106  Sum_probs=80.3

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      +....|..|+||||+|+. |+.+++++|++.+.     +++.++..|.||||+|+..|+.++++++...+...    ..+
T Consensus        30 ~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  103 (162)
T 1ihb_A           30 NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGA-----NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG  103 (162)
T ss_dssp             CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CccccCccCccHHHHHHc-CcHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            456788999999999999 99999999999987     89999999999999999999999999987655433    456


Q ss_pred             CcHHHHHHhcCchhhhHhhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      .||||+|+..|+.+++++|-.
T Consensus       104 ~t~L~~A~~~~~~~~v~~Ll~  124 (162)
T 1ihb_A          104 NLPLHLAAKEGHLRVVEFLVK  124 (162)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHH
Confidence            799999999999999998843

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.77  E-value=2.6e-18  Score=106.09  Aligned_cols=95  Identities=18%  Similarity=0.219  Sum_probs=56.3

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCc----------------------------hhhhcccccCCChHHH
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNA----------------------------SNVLKLQNEKGNTALH   54 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~----------------------------~~~~~~~~~~g~tpl~   54 (103)
                      +.+..|.+|+||||+|+..|+.+++++|++.+....                            .-+++.+|..|.||||
T Consensus        78 dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~  157 (269)
T 4b93_B           78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLI  157 (269)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            344556666666666666666666666655543000                            0045555666667777


Q ss_pred             HHHHcCCHHHHhhhhhhhhcc----ccCCcHHHHHHhcCchhhhHhh
Q 043593           55 LAAALGNAAFVKIGCLDIQSL----NIKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        55 ~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~~A~~~~~~~~~~~~   97 (103)
                      +|+..|+.+++++|+..++..    ..|.||||+|+..|+.+++++|
T Consensus       158 ~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~L  204 (269)
T 4b93_B          158 YACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL  204 (269)
T ss_dssp             HHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHH
Confidence            777777777776665443332    3345777777777777777666

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.77  E-value=4.7e-19  Score=101.25  Aligned_cols=89  Identities=10%  Similarity=-0.050  Sum_probs=59.9

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCCh-HHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNT-ALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~t-pl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      ....|..|+||||+|+ .|+.+++++|++.+.     +++.+|..|.| |||+|+..|+.+++++|+..++..    ..+
T Consensus        38 ~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~-----~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g  111 (156)
T 1bi7_B           38 PNAPNSYGRRPIQVMM-MGSARVAELLLLHGA-----EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG  111 (156)
T ss_dssp             TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC-----CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTC
T ss_pred             CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCC-----CCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCC
Confidence            4455666777777664 666777777777665     66677777777 777777777777777766554333    234


Q ss_pred             CcHHHHHHhcCchhhhHhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~   98 (103)
                      .||||+|+..|+.+++++|-
T Consensus       112 ~tpl~~A~~~~~~~~v~~Ll  131 (156)
T 1bi7_B          112 RLPVDLAEELGHRDVARYLR  131 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHS
T ss_pred             CCHHHHHHHhCHHHHHHHHH
Confidence            57777777777777777663

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.77  E-value=5.2e-18  Score=103.36  Aligned_cols=86  Identities=17%  Similarity=0.094  Sum_probs=74.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH---hcCcCchhhhcccccCCChHHHHHHH--cCCHH-------HHhhhhhhhhc---
Q 043593           10 SEDTALHIAVSDGRSDIVLKLVE---SMGQNASNVLKLQNEKGNTALHLAAA--LGNAA-------FVKIGCLDIQS---   74 (103)
Q Consensus        10 ~g~t~lh~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~g~tpl~~a~~--~~~~~-------~~~~l~~~~~~---   74 (103)
                      .|.||||+|+..|+.+++++|++   .|.     +++.+|..|.||||+|+.  .++.+       ++++|...++.   
T Consensus       135 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga-----~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  209 (256)
T 2etb_A          135 FGELPLSLAACTKQWDVVTYLLENPHQPA-----SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP  209 (256)
T ss_dssp             SCSSHHHHHHHTTCHHHHHHHHHCSSCCC-----CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccCC-----CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccc
Confidence            39999999999999999999999   787     899999999999999998  78888       88887655333   


Q ss_pred             --------cccCCcHHHHHHhcCchhhhHhhhhh
Q 043593           75 --------LNIKIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        75 --------~~~~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                              ...|.||||+|+..|+.+++++|--+
T Consensus       210 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  243 (256)
T 2etb_A          210 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR  243 (256)
T ss_dssp             TCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence                    34567999999999999999988443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.76  E-value=3e-18  Score=104.35  Aligned_cols=92  Identities=20%  Similarity=0.151  Sum_probs=73.8

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccc-cCCChHHHHHHHcCCHHHHhhhhhhhhcc----c
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQN-EKGNTALHLAAALGNAAFVKIGCLDIQSL----N   76 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~   76 (103)
                      ++.+..|..|+||||+|+..|+.+++++|++.+.     +++.++ ..|.||||+|+..|+.+++++|+..++..    .
T Consensus        68 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~  142 (244)
T 3ui2_A           68 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA-----DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE  142 (244)
T ss_dssp             CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC-----CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            3456788899999999999999999999999987     788887 78999999999999999999887655443    3


Q ss_pred             cCCcHHHHHH----------------hcCchhhhHhhh
Q 043593           77 IKIKLLDIQS----------------LNIKFKILDIQS   98 (103)
Q Consensus        77 ~~~tpl~~A~----------------~~~~~~~~~~~~   98 (103)
                      .+.||||+|+                ..|+.+++++|.
T Consensus       143 ~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~  180 (244)
T 3ui2_A          143 RGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLE  180 (244)
T ss_dssp             TCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHH
Confidence            3456666665                667777777774

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.76  E-value=3.7e-18  Score=105.41  Aligned_cols=91  Identities=27%  Similarity=0.295  Sum_probs=78.1

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ++.+..|..|+||||+|+..|+.+++++|++.|.     +++.++..|.||||+|+..|+.+++++|+..++..    ..
T Consensus       143 ~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga-----dvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~  217 (269)
T 4b93_B          143 AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA-----SINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKR  217 (269)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTC-----CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-----CCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            4567789999999999999999999999999998     89999999999999999999999999988766544    45


Q ss_pred             CCcHHHHHHhcCchhhhHhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      |.||||+|+.+++  ++++++.
T Consensus       218 G~TpL~~A~~~~~--i~~lL~~  237 (269)
T 4b93_B          218 QRTAVDCAEQNSK--IMELLQV  237 (269)
T ss_dssp             SCCSGGGSCTTCH--HHHHTTC
T ss_pred             CCCHHHHHHhCCc--HHHHHHH
Confidence            6799999987664  5555543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.76  E-value=1.6e-18  Score=100.90  Aligned_cols=94  Identities=22%  Similarity=0.245  Sum_probs=83.2

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ++....|..|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..++.+++++|+..++..    ..
T Consensus        63 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  137 (179)
T 3f6q_A           63 ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA-----DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY  137 (179)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTT
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccC
Confidence            4567789999999999999999999999999998     89999999999999999999999999988765544    34


Q ss_pred             CCcHHHHHHhcCchhhhHhhhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      +.||+++|+..++.++++++...
T Consensus       138 g~tpl~~A~~~~~~~~~~~L~~~  160 (179)
T 3f6q_A          138 GEMPVDKAKAPLRELLRERAEKM  160 (179)
T ss_dssp             SCCGGGGSCHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHh
Confidence            57999999999999999988543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.76  E-value=5.4e-18  Score=101.85  Aligned_cols=88  Identities=18%  Similarity=0.189  Sum_probs=76.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHH----hhhhhhhh---------
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFV----KIGCLDIQ---------   73 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~----~~l~~~~~---------   73 (103)
                      .|..|.||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|+..++.+++    ++|...++         
T Consensus       117 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-----~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~  191 (232)
T 2rfa_A          117 LIYYGEHPLSFAACVGSEEIVRLLIEHGA-----DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLEL  191 (232)
T ss_dssp             SCCCCSSHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGG
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhc
Confidence            45589999999999999999999999998     8999999999999999999999988    77665543         


Q ss_pred             -ccccCCcHHHHHHhcCchhhhHhhhh
Q 043593           74 -SLNIKIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        74 -~~~~~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                       ....+.|||++|+..|+.+++++|--
T Consensus       192 ~~~~~g~tpl~~A~~~g~~~~v~~Ll~  218 (232)
T 2rfa_A          192 VPNNQGLTPFKLAGVEGNIVMFQHLMQ  218 (232)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence             23456799999999999999998843

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=4.9e-18  Score=109.06  Aligned_cols=93  Identities=16%  Similarity=0.108  Sum_probs=82.0

Q ss_pred             ccccCC--CCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----c
Q 043593            3 QAAKIT--NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----N   76 (103)
Q Consensus         3 ~~~~~d--~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~   76 (103)
                      +....|  ..|.||||+|+..|+.+++++|++.+.     +++..|..|.||||+|+..|+.+++++|+..++..    .
T Consensus       225 dvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga-----dvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~  299 (368)
T 3jue_A          225 DVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA-----NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS  299 (368)
T ss_dssp             CTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCC
Confidence            445556  889999999999999999999999998     89999999999999999999999999988765544    3


Q ss_pred             cCCcHHHHHHhcCchhhhHhhhhh
Q 043593           77 IKIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        77 ~~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      .+.||||+|+..++.+++++|...
T Consensus       300 ~G~TpL~~A~~~g~~~iv~lLl~~  323 (368)
T 3jue_A          300 EGRDPLTIAMETANADIVTLLRLA  323 (368)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHc
Confidence            557999999999999999998643

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.76  E-value=3.6e-18  Score=108.62  Aligned_cols=97  Identities=13%  Similarity=0.050  Sum_probs=68.0

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      |+....|..|+||||+|+..|+.+++++|++.+......+++..|..|.||||+|+..|+.+++++|+..++..    ..
T Consensus       164 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~  243 (364)
T 3ljn_A          164 ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNE  243 (364)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence            34556777788888888888888888888877761000017777777888888888888888887776554433    34


Q ss_pred             CCcHHHHHHhcCchhhhHhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      +.|||++|+..|+.+++++|-
T Consensus       244 g~tpL~~A~~~g~~~~v~~Ll  264 (364)
T 3ljn_A          244 HTVPLYLSVRAAMVLLTKELL  264 (364)
T ss_dssp             SCCHHHHHHHTCCHHHHHHHH
T ss_pred             CCCHHHHHHHhChHHHHHHHH
Confidence            468888888888888877774

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.76  E-value=6.3e-18  Score=106.29  Aligned_cols=91  Identities=15%  Similarity=0.160  Sum_probs=81.3

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      .....|..|.||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|+..|+.+++++|+..+...    ..+
T Consensus        50 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g  124 (351)
T 3utm_A           50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA-----DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ  124 (351)
T ss_dssp             TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence            345678999999999999999999999999997     89999999999999999999999999988765443    345


Q ss_pred             CcHHHHHHhcCchhhhHhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~   98 (103)
                      .||||+|+..|+.+++++|-
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll  144 (351)
T 3utm_A          125 FTPLHEAASKNRVEVCSLLL  144 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHH
Confidence            79999999999999999884

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.76  E-value=4.7e-18  Score=106.47  Aligned_cols=88  Identities=23%  Similarity=0.223  Sum_probs=79.2

Q ss_pred             CCCCCCcHHHHHHHc---CCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            7 ITNSEDTALHIAVSD---GRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      .|..|.||||+|+..   ++.+++++|++.|.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..|.
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga-----dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~  260 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGG-----HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGE  260 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSC
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            588999999999997   89999999999998     89999999999999999999999999988766554    3457


Q ss_pred             cHHHHHHhcCchhhhHhhhh
Q 043593           80 KLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~~~   99 (103)
                      |||++|+..++.+++++|..
T Consensus       261 TpL~~A~~~~~~~iv~~Ll~  280 (301)
T 2b0o_E          261 TALDIARKKHHKECEELLEQ  280 (301)
T ss_dssp             CHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999998853

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.76  E-value=1e-17  Score=100.27  Aligned_cols=92  Identities=20%  Similarity=0.140  Sum_probs=72.4

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhh-hc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDI-QS----LN   76 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~-~~----~~   76 (103)
                      +.....|..|.||||+|+..++.+++++|++.+.     +++.++..|.||||+|+..|+.+++++++..+ ..    ..
T Consensus        98 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~  172 (228)
T 2dzn_A           98 PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA-----SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK  172 (228)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCT
T ss_pred             cccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCC-----CccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCC
Confidence            3455677888888888888888888888888876     78888888888888888888888888876654 32    23


Q ss_pred             cCCcHHHHHHhcCchhhhHhhh
Q 043593           77 IKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        77 ~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      .+.||||+|+..|+.+++++|-
T Consensus       173 ~g~t~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          173 QGWTPLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHH
Confidence            4568888888888888888774

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.75  E-value=5.8e-18  Score=104.08  Aligned_cols=87  Identities=15%  Similarity=0.101  Sum_probs=75.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH---hcCcCchhhhcccccCCChHHHHHHHcCC---------HHHHhhhhhhhhc-
Q 043593            8 TNSEDTALHIAVSDGRSDIVLKLVE---SMGQNASNVLKLQNEKGNTALHLAAALGN---------AAFVKIGCLDIQS-   74 (103)
Q Consensus         8 d~~g~t~lh~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~g~tpl~~a~~~~~---------~~~~~~l~~~~~~-   74 (103)
                      +..|.||||+|+..|+.+++++|++   .+.     +++.+|..|.||||+|+..++         .+++++|+..++. 
T Consensus       145 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga-----d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  219 (273)
T 2pnn_A          145 FYFGELPLSLAACTNQLAIVKFLLQNSWQPA-----DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL  219 (273)
T ss_dssp             CCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC-----CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhcccCCC-----CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhc
Confidence            3489999999999999999999999   777     899999999999999999888         7888887654433 


Q ss_pred             ----------cccCCcHHHHHHhcCchhhhHhhhh
Q 043593           75 ----------LNIKIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        75 ----------~~~~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                                ...+.||||+|+..|+.+++++|-.
T Consensus       220 n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  254 (273)
T 2pnn_A          220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ  254 (273)
T ss_dssp             CTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccCCCCCCHHHHHHHhChHHHHHHHHH
Confidence                      3456799999999999999998843

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.75  E-value=6.5e-19  Score=103.73  Aligned_cols=93  Identities=10%  Similarity=-0.032  Sum_probs=77.7

Q ss_pred             cccccCCCCCCcHHHHHHHcCC------HHHHHHHHHhcCcCchhhhcccccCCC-hHHHHHHHcCC-----HHHHhhhh
Q 043593            2 IQAAKITNSEDTALHIAVSDGR------SDIVLKLVESMGQNASNVLKLQNEKGN-TALHLAAALGN-----AAFVKIGC   69 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~------~~~~~~Ll~~~~~~~~~~~~~~~~~g~-tpl~~a~~~~~-----~~~~~~l~   69 (103)
                      |+....|.+|+||||+|+..++      .+++++|++.|.     +++.+|..|. ||||+|+..+.     .+++++|+
T Consensus        66 advn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Ga-----din~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll  140 (186)
T 3t8k_A           66 ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA-----DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF  140 (186)
T ss_dssp             CCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTC-----CSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCC-----CCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHH
Confidence            5678889999999999999887      578999999998     8999999999 99999998543     45777777


Q ss_pred             h-hhhcc----ccCCcHHHHHHhcCchhhhHhhhh
Q 043593           70 L-DIQSL----NIKIKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        70 ~-~~~~~----~~~~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      . .++..    ..|.||||+|+..++.+++++|.-
T Consensus       141 ~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED  175 (186)
T ss_dssp             TSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred             HhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            6 55444    456799999999999999998853

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.75  E-value=8.1e-18  Score=106.19  Aligned_cols=91  Identities=15%  Similarity=0.055  Sum_probs=76.0

Q ss_pred             ccccc-CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCC-------HHHHhhhhh-hh
Q 043593            2 IQAAK-ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN-------AAFVKIGCL-DI   72 (103)
Q Consensus         2 a~~~~-~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~-------~~~~~~l~~-~~   72 (103)
                      ++.+. .|..|+||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|+..|+       ..+++++.. ..
T Consensus       121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Ga-----d~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~  195 (327)
T 1sw6_A          121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS-----NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI  195 (327)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc
Confidence            34555 79999999999999999999999999998     899999999999999999988       444444433 33


Q ss_pred             hccccCCcHHHHHHh----cCchhhhHhh
Q 043593           73 QSLNIKIKLLDIQSL----NIKFKILDIQ   97 (103)
Q Consensus        73 ~~~~~~~tpl~~A~~----~~~~~~~~~~   97 (103)
                      .....+.||||+|+.    .|+.++++++
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~g~~~~v~~L  224 (327)
T 1sw6_A          196 LEDSMNRTILHHIIITSGMTGCSAAAKYY  224 (327)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHccccccHHHHHHH
Confidence            444567899999998    8899998887

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.75  E-value=3.8e-18  Score=102.24  Aligned_cols=87  Identities=18%  Similarity=0.131  Sum_probs=63.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhh-hhcc----ccCCcH
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLD-IQSL----NIKIKL   81 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~-~~~~----~~~~tp   81 (103)
                      .|.+|.||||+|+..|+.++++.|++.+.     +++.+|..|.||||+|+..|+.+++++|+.. +...    ..+.||
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tp  143 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRV-----GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTA  143 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCC-----CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCH
Confidence            34566778888888888888888887776     6777777788888888888888888777654 3322    344678


Q ss_pred             HHHHHhcCchhhhHhhh
Q 043593           82 LDIQSLNIKFKILDIQS   98 (103)
Q Consensus        82 l~~A~~~~~~~~~~~~~   98 (103)
                      ||+|+..|+.+++++|-
T Consensus       144 L~~A~~~~~~~~v~~Ll  160 (222)
T 3ehr_A          144 LHAAAWKGYADIVQLLL  160 (222)
T ss_dssp             HHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHH
Confidence            88888888877777763

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.75  E-value=1.3e-17  Score=99.52  Aligned_cols=90  Identities=20%  Similarity=0.212  Sum_probs=58.0

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      ....|..|.||||+|+..++.+++++|++.+.     +++.++..|.||||+|+..++.+++++|+..++..    ..+.
T Consensus       118 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  192 (223)
T 2f8y_A          118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA-----NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR  192 (223)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCC-----CCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCC
Confidence            44556666777777777777777777776665     56666666777777777777777766665544332    2335


Q ss_pred             cHHHHHHhcCchhhhHhhh
Q 043593           80 KLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~~   98 (103)
                      ||+++|+..++.+++++|.
T Consensus       193 t~l~~A~~~~~~~i~~~L~  211 (223)
T 2f8y_A          193 LPRDIAQERMHHDIVRLLD  211 (223)
T ss_dssp             CHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHhcchHHHHHHH
Confidence            7777777777777766663

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.75  E-value=7.3e-18  Score=101.93  Aligned_cols=89  Identities=20%  Similarity=0.052  Sum_probs=79.1

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      ...+.+|.||||.|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..+.|
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t   89 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEMN-----DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWT   89 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence            3556778899999999999999999999998     89999999999999999999999999988665443    35679


Q ss_pred             HHHHHHhcCchhhhHhhh
Q 043593           81 LLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~~   98 (103)
                      |||+|+..|+.+++++|-
T Consensus        90 pLh~A~~~g~~~~v~~Ll  107 (229)
T 2vge_A           90 PLHCAASCNDTVICMALV  107 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            999999999999999884

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.74  E-value=7e-18  Score=106.35  Aligned_cols=92  Identities=20%  Similarity=0.175  Sum_probs=79.0

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccccCCcH
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIKIKL   81 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~~~~tp   81 (103)
                      |+.+..|..|+||||+|+..|+.++++.|+...+.    +++.+|..|.||||+|+..|+.+++++|+..++..+ ..+|
T Consensus       230 ad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~----~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n-~~~~  304 (337)
T 4g8k_A          230 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI----EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD-CGDL  304 (337)
T ss_dssp             CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTC----CTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST-TCCH
T ss_pred             CCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCC----cccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCH
Confidence            45667888999999999999999999999986444    788999999999999999999999999988776654 3579


Q ss_pred             HHHHHhcCchhhhHhhh
Q 043593           82 LDIQSLNIKFKILDIQS   98 (103)
Q Consensus        82 l~~A~~~~~~~~~~~~~   98 (103)
                      |++|+.+|+.+++++|-
T Consensus       305 L~~A~~~~~~~iv~~Ll  321 (337)
T 4g8k_A          305 VMTARRNYDHSLVKVLL  321 (337)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHH
Confidence            99999999999999884

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.74  E-value=9.7e-18  Score=102.29  Aligned_cols=88  Identities=24%  Similarity=0.164  Sum_probs=74.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccc--------------cCCChHHHHHHHcCCHHHHhhhhh
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQN--------------EKGNTALHLAAALGNAAFVKIGCL   70 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~--------------~~g~tpl~~a~~~~~~~~~~~l~~   70 (103)
                      ...|..|+||||+|+..|+.+++++|++.|.     +++..+              ..|.||||+|+..|+.+++++|+.
T Consensus        87 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-----~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A           87 RDVYYRGQTALHIAIERRCKHYVELLVEKGA-----DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             CCSSEESBCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhCCC-----CcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence            3455699999999999999999999999997     788888              689999999999999999999888


Q ss_pred             ---hhhcc----ccCCcHHHHHHhcCc---------hhhhHhh
Q 043593           71 ---DIQSL----NIKIKLLDIQSLNIK---------FKILDIQ   97 (103)
Q Consensus        71 ---~~~~~----~~~~tpl~~A~~~~~---------~~~~~~~   97 (103)
                         .++..    ..|.||||+|+..++         .+++++|
T Consensus       162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~L  204 (260)
T 3jxi_A          162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL  204 (260)
T ss_dssp             CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred             ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHH
Confidence               55443    346799999998777         4666665

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.74  E-value=1.5e-17  Score=97.93  Aligned_cols=91  Identities=25%  Similarity=0.154  Sum_probs=58.4

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCC-----HHHHhhhhhhhhcc---
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN-----AAFVKIGCLDIQSL---   75 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~-----~~~~~~l~~~~~~~---   75 (103)
                      ....|..|.||||+|+..|+.+++++|++.+..    +++.+|..|.||||+|+..+.     .+++++|...++..   
T Consensus        99 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~  174 (201)
T 3hra_A           99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE----DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK  174 (201)
T ss_dssp             TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCC----CTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC
T ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc
Confidence            445566677777777777777777777776622    566666777777777776666     66666665443332   


Q ss_pred             -ccCCcHHHHHHhcCchhhhHhhh
Q 043593           76 -NIKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        76 -~~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                       ..+.|||++|+..|+.+++++|-
T Consensus       175 ~~~g~t~l~~A~~~~~~~~~~~Ll  198 (201)
T 3hra_A          175 DNSGRTAMDYANQKGYTEISKILA  198 (201)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHhHHHHHH
Confidence             23457777777777777776663

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.74  E-value=8.5e-18  Score=101.36  Aligned_cols=87  Identities=24%  Similarity=0.159  Sum_probs=46.3

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhccccc-CCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            6 KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNE-KGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         6 ~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      ..|..|.||||+|+..|+.+++++|++.|.     +++.++. .|.||||+|+..|+.+++++|+..++..    ..+.|
T Consensus       112 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t  186 (236)
T 1ikn_D          112 ATNYNGHTCLHLASIHGYLGIVELLVSLGA-----DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS  186 (236)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHTC-----CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCC
Confidence            444555555555555555555555555554     4555554 5555555555555555555554433322    22345


Q ss_pred             HHHHHHhcCchhhhHhh
Q 043593           81 LLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~   97 (103)
                      ||++|+..++.+++++|
T Consensus       187 pl~~A~~~~~~~~~~~L  203 (236)
T 1ikn_D          187 PYQLTWGRPSTRIQQQL  203 (236)
T ss_dssp             GGGGCTTSSCHHHHHHH
T ss_pred             HHHHHHccCchHHHHHH
Confidence            55555555555555555

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.74  E-value=3.9e-18  Score=102.84  Aligned_cols=93  Identities=23%  Similarity=0.176  Sum_probs=44.1

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcC-chhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccc-----cC
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQN-ASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLN-----IK   78 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~-~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~-----~~   78 (103)
                      ...|..|+||||+|+..|+.+++++|++.+... .....+..+..|.||||+|+..|+.+++++|+..+...+     .+
T Consensus        72 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g  151 (236)
T 1ikn_D           72 ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG  151 (236)
T ss_dssp             CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTC
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            344455555555555555555555555544200 000133444455555555555555555555554433321     23


Q ss_pred             CcHHHHHHhcCchhhhHhh
Q 043593           79 IKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~   97 (103)
                      .||||+|+..|+.+++++|
T Consensus       152 ~tpL~~A~~~~~~~~v~~L  170 (236)
T 1ikn_D          152 RTALHLAVDLQNPDLVSLL  170 (236)
T ss_dssp             CCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHH
Confidence            4555555555555555554

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.74  E-value=1.4e-17  Score=103.34  Aligned_cols=88  Identities=15%  Similarity=0.037  Sum_probs=55.2

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      ...|.+|+||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|+..+...    ..+.|
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  127 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGW-----AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT  127 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTC-----CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCC
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHCCC-----CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCC
Confidence            3456666666666666666666666666665     56666666666666666666666666665443332    23346


Q ss_pred             HHHHHHhcCchhhhHhh
Q 043593           81 LLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~   97 (103)
                      ||++|+..|+.+++++|
T Consensus       128 ~L~~A~~~~~~~~v~~L  144 (285)
T 3d9h_A          128 PLFNACVSGSWDCVNLL  144 (285)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCHHHHHHHH
Confidence            66666666666666655

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.74  E-value=2.4e-17  Score=90.42  Aligned_cols=85  Identities=24%  Similarity=0.293  Sum_probs=75.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHHHH
Q 043593           10 SEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLDIQ   85 (103)
Q Consensus        10 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~~A   85 (103)
                      +|.||||.|+..|+.+++++|++.+.     +++..+..|.||||+|+..++.++++++...+...    ..+.||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A   75 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA-----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA   75 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCC-----CCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHH
Confidence            58999999999999999999999987     78899999999999999999999999987655443    3457999999


Q ss_pred             HhcCchhhhHhhhh
Q 043593           86 SLNIKFKILDIQSL   99 (103)
Q Consensus        86 ~~~~~~~~~~~~~~   99 (103)
                      +..++.++++++-.
T Consensus        76 ~~~~~~~~~~~Ll~   89 (126)
T 1n0r_A           76 ARNGHLEVVKLLLE   89 (126)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHcChHHHHHHHHH
Confidence            99999999998843

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.74  E-value=1.9e-18  Score=101.08  Aligned_cols=85  Identities=18%  Similarity=0.203  Sum_probs=75.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc-----ccCCcHH
Q 043593            8 TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL-----NIKIKLL   82 (103)
Q Consensus         8 d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~-----~~~~tpl   82 (103)
                      +.+|.||||.|+..|+.++++.|++ +.     +++.+|..|.||||+|+..|+.+++++|+..++..     ..+.|||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~-----~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL  114 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DR-----DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL  114 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TS-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence            5578999999999999999999999 66     79999999999999999999999999987665443     3467999


Q ss_pred             HHHHhcCchhhhHhhh
Q 043593           83 DIQSLNIKFKILDIQS   98 (103)
Q Consensus        83 ~~A~~~~~~~~~~~~~   98 (103)
                      |+|+..|+.+++++|-
T Consensus       115 ~~A~~~~~~~~v~~Ll  130 (183)
T 3deo_A          115 HMAAGYVRPEVVEALV  130 (183)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHH
Confidence            9999999999999884

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.74  E-value=7.1e-18  Score=94.37  Aligned_cols=88  Identities=20%  Similarity=0.190  Sum_probs=76.4

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcH
Q 043593            6 KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKL   81 (103)
Q Consensus         6 ~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tp   81 (103)
                      .....+.||||+|+..|+.+++++|++.+.     +++..|..|.||||+|+..++.+++++|+..+...    ..+.||
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~   83 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGA-----DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTP   83 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCH
Confidence            345668899999999999999999999997     78999999999999999999999999987665443    345799


Q ss_pred             HHHHHhcCchhhhHhhh
Q 043593           82 LDIQSLNIKFKILDIQS   98 (103)
Q Consensus        82 l~~A~~~~~~~~~~~~~   98 (103)
                      ||+|+..++.+++++|-
T Consensus        84 L~~A~~~~~~~~v~~Ll  100 (136)
T 2jab_A           84 LHLAAFIGHLEIAEVLL  100 (136)
T ss_dssp             HHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHH
Confidence            99999999999999884

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.73  E-value=2.1e-18  Score=103.39  Aligned_cols=92  Identities=27%  Similarity=0.210  Sum_probs=78.7

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHh-cCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----c
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVES-MGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----N   76 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~   76 (103)
                      ++....|..|+||||+|+..|+.+++++|++. +.     +++.+|..|.||||+|+..|+.+++++|+..++..    .
T Consensus        97 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~-----~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  171 (222)
T 3ehr_A           97 VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI-----ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI  171 (222)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC-----CCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCT
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC-----CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence            34667899999999999999999999999998 66     89999999999999999999999999988765544    3


Q ss_pred             cCCcHHHHHHhcCchhhhHhhh
Q 043593           77 IKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        77 ~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      .+.|||++|+..++.++++.+.
T Consensus       172 ~g~t~l~~A~~~~~~~~l~~l~  193 (222)
T 3ehr_A          172 EKKLAFDMATNAACASLLKKKQ  193 (222)
T ss_dssp             TSCCHHHHCCSHHHHHHHC---
T ss_pred             CCCCHHHHhcchhHHHHHHHHh
Confidence            5579999999988888887764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.73  E-value=1.8e-17  Score=107.46  Aligned_cols=92  Identities=21%  Similarity=0.168  Sum_probs=65.9

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      ..+..|..|.||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..|
T Consensus       303 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-----d~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g  377 (437)
T 1n11_A          303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA-----DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG  377 (437)
T ss_dssp             CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSS
T ss_pred             cCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC-----CCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCC
Confidence            345567777777777777777777777777776     67777777777777777777777777776655443    234


Q ss_pred             CcHHHHHHhcCchhhhHhhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      .||+++|...|+.++++++..
T Consensus       378 ~t~l~~A~~~g~~~~~~~l~~  398 (437)
T 1n11_A          378 TTPLAIAKRLGYISVTDVLKV  398 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHh
Confidence            577777777777777777653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.73  E-value=2.3e-17  Score=102.19  Aligned_cols=63  Identities=27%  Similarity=0.215  Sum_probs=46.4

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhh
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCL   70 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~   70 (103)
                      +....|..|.||||+|+..|+.+++++|++.|.     +++..|..|.||||+|+..|+.+++++|+.
T Consensus        65 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-----~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  127 (299)
T 1s70_B           65 DINYANVDGLTALHQACIDDNVDMVKFLVENGA-----NINQPDNEGWIPLHAAASCGYLDIAEYLIS  127 (299)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC-----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            345567777777777777777777777777776     677777777777777777777777777654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.73  E-value=1.1e-17  Score=108.51  Aligned_cols=92  Identities=22%  Similarity=0.149  Sum_probs=63.4

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      |+.+..|.+|+||||+|+..|+.+++++|++.+.     +++..+..|.||||+|+..|+.+++++|...+...    ..
T Consensus         5 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-----~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~   79 (437)
T 1n11_A            5 ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGA-----SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD   79 (437)
T ss_dssp             ----------CCHHHHHHHHTCHHHHHHHHHTTC-----CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT
T ss_pred             CCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Confidence            4556777888888888888888888888888876     67777788888888888888888888877655433    34


Q ss_pred             CCcHHHHHHhcCchhhhHhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      +.||||+|+..|+.+++++|-
T Consensus        80 g~t~L~~A~~~g~~~~v~~Ll  100 (437)
T 1n11_A           80 DQTPLHCAARIGHTNMVKLLL  100 (437)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHH
Confidence            468888888888888887773

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.73  E-value=3e-17  Score=99.97  Aligned_cols=87  Identities=23%  Similarity=0.143  Sum_probs=74.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccC-------------CChHHHHHHHcCCHHHHhhhhh---
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEK-------------GNTALHLAAALGNAAFVKIGCL---   70 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-------------g~tpl~~a~~~~~~~~~~~l~~---   70 (103)
                      .|..|.||||+|+..|+.+++++|++.|.     +++..+..             |.||||+|+..|+.+++++|+.   
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-----~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVENGA-----DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence            45789999999999999999999999997     78888775             9999999999999999999888   


Q ss_pred             hhhcc----ccCCcHHHHHHh--cCchh-------hhHhhh
Q 043593           71 DIQSL----NIKIKLLDIQSL--NIKFK-------ILDIQS   98 (103)
Q Consensus        71 ~~~~~----~~~~tpl~~A~~--~~~~~-------~~~~~~   98 (103)
                      .++..    ..|.||||+|+.  .++.+       ++++|-
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll  201 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLL  201 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHH
Confidence            55443    456799999998  77777       777763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.73  E-value=2.5e-17  Score=102.16  Aligned_cols=92  Identities=15%  Similarity=0.015  Sum_probs=82.1

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc---ccC
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL---NIK   78 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~---~~~   78 (103)
                      ++....|.+|+||||+|+..|+.+++++|++.+.     +++..|..|.||||+|+..|+.+++++|+..+...   ..+
T Consensus        83 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g  157 (285)
T 3d9h_A           83 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGA-----QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL  157 (285)
T ss_dssp             CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTT
T ss_pred             CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCC
Confidence            3466789999999999999999999999999987     89999999999999999999999999987765443   346


Q ss_pred             CcHHHHHHhcCchhhhHhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~   98 (103)
                      .||||+|+..|+.+++++|-
T Consensus       158 ~t~L~~A~~~g~~~~v~~Ll  177 (285)
T 3d9h_A          158 ASPIHEAARRGHVECVNSLI  177 (285)
T ss_dssp             SCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHH
Confidence            79999999999999999884

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.73  E-value=1.5e-17  Score=101.44  Aligned_cols=90  Identities=17%  Similarity=0.122  Sum_probs=65.6

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      ....|..|.||||+|+..++.+++++|++.+.     +++..|..|.||||+|+..|+.+++++|+..++..    ..+.
T Consensus       117 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  191 (253)
T 1yyh_A          117 LDARMHDGTTPLILAARLAVEGMLEDLINSHA-----DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE  191 (253)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTC-----CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccccCCCCCcHHHHHHHcChHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            44566777777777777777777777777776     67777777888888888888888887776554433    3456


Q ss_pred             cHHHHHHhcCchhhhHhhh
Q 043593           80 KLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~~   98 (103)
                      ||||+|+..|+.+++++|-
T Consensus       192 tpL~~A~~~~~~~~v~~Ll  210 (253)
T 1yyh_A          192 TPLFLAAREGSYETAKVLL  210 (253)
T ss_dssp             CHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHH
Confidence            8888888888888877773

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.73  E-value=4e-17  Score=97.92  Aligned_cols=86  Identities=24%  Similarity=0.211  Sum_probs=35.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHH
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLL   82 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl   82 (103)
                      .|..|.||||+|+..++.+++++|++.+.     +++..+..|.||||+|+..|+.++++++...+...    ..+.|||
T Consensus       102 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  176 (231)
T 3aji_A          102 VNQNGCTPLHYAASKNRHEIAVMLLEGGA-----NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPL  176 (231)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHH
Confidence            33444444444444444444444444443     33344444444444444444444444433322211    1223444


Q ss_pred             HHHHhcCchhhhHhh
Q 043593           83 DIQSLNIKFKILDIQ   97 (103)
Q Consensus        83 ~~A~~~~~~~~~~~~   97 (103)
                      |+|+..++.+++++|
T Consensus       177 ~~A~~~~~~~~v~~L  191 (231)
T 3aji_A          177 HLACDEERVEEAKFL  191 (231)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHCCCHHHHHHH
Confidence            444444444444444

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.73  E-value=3.3e-17  Score=100.70  Aligned_cols=86  Identities=22%  Similarity=0.173  Sum_probs=74.4

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhccccc--------------CCChHHHHHHHcCCHHHHhhhhh--
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNE--------------KGNTALHLAAALGNAAFVKIGCL--   70 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~--------------~g~tpl~~a~~~~~~~~~~~l~~--   70 (103)
                      .|..|+||||+|+..|+.+++++|++.|.     +++..+.              .|.||||+|+..|+.+++++|+.  
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga-----~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  171 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENGA-----DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS  171 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCCC-----CcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            56799999999999999999999999987     7888876              79999999999999999999888  


Q ss_pred             -hhhcc----ccCCcHHHHHHhcCc---------hhhhHhh
Q 043593           71 -DIQSL----NIKIKLLDIQSLNIK---------FKILDIQ   97 (103)
Q Consensus        71 -~~~~~----~~~~tpl~~A~~~~~---------~~~~~~~   97 (103)
                       .++..    ..+.||||+|+..|+         .+++++|
T Consensus       172 ~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~L  212 (273)
T 2pnn_A          172 WQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEI  212 (273)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred             cCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHH
Confidence             55443    345799999999887         5666665

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.73  E-value=1.9e-17  Score=102.79  Aligned_cols=86  Identities=19%  Similarity=0.121  Sum_probs=49.5

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      ...|.+|.||||+|+..|+.+++++|++.+.     +++..  .|.||||+|+..|+.+++++|+..++..    ..+.|
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t   97 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNAGA-----LKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNT   97 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTG-----GGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCC-----CCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCc
Confidence            4556666666666666666666666666654     44444  2566666666666666666555433322    23346


Q ss_pred             HHHHHHhcCchhhhHhh
Q 043593           81 LLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~   97 (103)
                      |||+|+..|+.+++++|
T Consensus        98 ~L~~A~~~g~~~~v~~L  114 (285)
T 3kea_A           98 ALYYAVDSGNMQTVKLF  114 (285)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHH
Confidence            66666666666666555

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.73  E-value=3.5e-17  Score=101.57  Aligned_cols=90  Identities=21%  Similarity=0.211  Sum_probs=58.7

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCC-ChHHHHHHHcCCHHHHhhhhhhhhccc---cC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKG-NTALHLAAALGNAAFVKIGCLDIQSLN---IK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g-~tpl~~a~~~~~~~~~~~l~~~~~~~~---~~   78 (103)
                      +....|..|+||||+|+..|+.+++++|++.|.     +++.++..| .||||+|+..|+.+++++|...+....   .+
T Consensus        87 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga-----~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g  161 (285)
T 3kea_A           87 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW-----RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAIL  161 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCG-----GGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTH
T ss_pred             CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC-----CCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCC
Confidence            344566677777777777777777777777765     666666666 577777777777777766655433321   33


Q ss_pred             CcHHHHHHhcCchhhhHhh
Q 043593           79 IKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~   97 (103)
                      .||||+|+..|+.+++++|
T Consensus       162 ~t~L~~A~~~g~~~~v~~L  180 (285)
T 3kea_A          162 LSCIHITIKNGHVDMMILL  180 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHcChHHHHHHH
Confidence            4667776666666666665

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.73  E-value=4.8e-17  Score=97.09  Aligned_cols=89  Identities=17%  Similarity=0.131  Sum_probs=62.9

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      ....|..|.||||+|+..++.+++++|++.+.     +++..+..|.||||+|+..++.+++++++..+...    ..+.
T Consensus        85 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  159 (223)
T 2f8y_A           85 LDARMHDGTTPLILAARLAVEGMLEDLINSHA-----DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE  159 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-----CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCC-----CCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCc
Confidence            34556677777777777777777777777776     67777777777777777777777777766544332    3445


Q ss_pred             cHHHHHHhcCchhhhHhh
Q 043593           80 KLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~   97 (103)
                      ||||+|+..|+.+++++|
T Consensus       160 t~L~~A~~~~~~~~v~~L  177 (223)
T 2f8y_A          160 TPLFLAAREGSYETAKVL  177 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHH
Confidence            777777777777777776

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.72  E-value=1e-17  Score=101.52  Aligned_cols=86  Identities=19%  Similarity=0.127  Sum_probs=75.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHH
Q 043593            8 TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLD   83 (103)
Q Consensus         8 d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~   83 (103)
                      +..|.||||.|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..+.||||
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~  108 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQRIIYEVD-----DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH  108 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTSTTS-----SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHH
T ss_pred             CchhhHHHHHHHHcCCHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence            4678999999999999999999999998     89999999999999999999999999987765443    45679999


Q ss_pred             HHHhcCchhhhHhhh
Q 043593           84 IQSLNIKFKILDIQS   98 (103)
Q Consensus        84 ~A~~~~~~~~~~~~~   98 (103)
                      +|+..|+.+++++|-
T Consensus       109 ~A~~~~~~~~v~~Ll  123 (239)
T 1ycs_B          109 CAASCNNVQVCKFLV  123 (239)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHH
Confidence            999999999999884

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.72  E-value=2.9e-17  Score=105.20  Aligned_cols=91  Identities=26%  Similarity=0.191  Sum_probs=80.7

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcH
Q 043593            6 KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKL   81 (103)
Q Consensus         6 ~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tp   81 (103)
                      ..|..|.||||+|+..|+.+++++|++.++.    +++.+|..|.||||+|+..|+.+++++|+..++..    ..+.||
T Consensus       274 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~----~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~  349 (373)
T 2fo1_E          274 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGS----NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA  349 (373)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCH
T ss_pred             cccccCCCHHHHHHHhCCHHHHHHHHHhcCC----CccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCH
Confidence            4677999999999999999999999998743    89999999999999999999999999988765544    355799


Q ss_pred             HHHHHhcCchhhhHhhhhh
Q 043593           82 LDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        82 l~~A~~~~~~~~~~~~~~~  100 (103)
                      |++|+..|+.+++++|..+
T Consensus       350 l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          350 RQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhc
Confidence            9999999999999998654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.72  E-value=6.4e-17  Score=97.33  Aligned_cols=91  Identities=18%  Similarity=0.108  Sum_probs=63.2

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      .....|.+|.||||+|+..|+.+++++|++.+.     +++..+..|.||||+|+..|+.++++++...+...    ..+
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g   77 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA-----NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG   77 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTS
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCC-----CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Confidence            345567777777777777777777777777776     66777777777777777777777777766544332    234


Q ss_pred             CcHHHHHHhcCchhhhHhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~   98 (103)
                      .||||+|+..|+.++++++-
T Consensus        78 ~t~L~~A~~~~~~~~~~~Ll   97 (237)
T 3b7b_A           78 STCLHLAAKKGHYEVVQYLL   97 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHH
Confidence            57777777777777777663

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.72  E-value=4.8e-17  Score=97.94  Aligned_cols=87  Identities=24%  Similarity=0.188  Sum_probs=44.8

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHH----hcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            6 KITNSEDTALHIAVSDGRSDIVLKLVE----SMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         6 ~~d~~g~t~lh~a~~~~~~~~~~~Ll~----~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ..|.+|.||||+|+..|+.++++.|++    .+.     +++..|..|.||||+|+..|+.+++++|+..+...    ..
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~   78 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR-----ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRH   78 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTC-----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCC
Confidence            345555666666666665555555554    232     45555555555666655555555555554433222    22


Q ss_pred             CCcHHHHHHhcCchhhhHhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~   97 (103)
                      +.||||+|+..++.++++.+
T Consensus        79 g~t~l~~A~~~~~~~~~~~L   98 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRAL   98 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHH
Confidence            34555555555555555544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.72  E-value=6.6e-17  Score=96.95  Aligned_cols=88  Identities=23%  Similarity=0.238  Sum_probs=48.8

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      ...|.+|.||||+|+..|+.+++++|++.+.     +++..|..|.||||+|+..|+.++++++...+...    ..+.|
T Consensus        34 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  108 (231)
T 3aji_A           34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGV-----PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCT  108 (231)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCC-----CCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            3445556666666666666666666666554     45555556666666666666666665554433222    22345


Q ss_pred             HHHHHHhcCchhhhHhh
Q 043593           81 LLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~   97 (103)
                      |||+|+..++.++++++
T Consensus       109 ~L~~A~~~~~~~~~~~L  125 (231)
T 3aji_A          109 PLHYAASKNRHEIAVML  125 (231)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHH
Confidence            55555555555555554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.72  E-value=2e-17  Score=105.24  Aligned_cols=87  Identities=17%  Similarity=0.022  Sum_probs=78.6

Q ss_pred             CCCCCCcHHHHHHHcC--CHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc---------c
Q 043593            7 ITNSEDTALHIAVSDG--RSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS---------L   75 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~---------~   75 (103)
                      .|..|.||||+|+..|  +.+++++|++.|.     +++..|..|.||||+|+..|+.+++++|+..+..         .
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~  208 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGA-----SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYAN  208 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCC-----CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccC
Confidence            7788999999999999  9999999999997     8999999999999999999999999998865443         2


Q ss_pred             ccCCcHHHHHHhcCchhhhHhhh
Q 043593           76 NIKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        76 ~~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      ..+.||||+|+..|+.+++++|-
T Consensus       209 ~~g~t~L~~A~~~g~~~~v~~Ll  231 (364)
T 3ljn_A          209 KQGNSHLHWAILINWEDVAMRFV  231 (364)
T ss_dssp             TTCCCTTHHHHTTTCHHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHH
Confidence            45679999999999999999984

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.72  E-value=8.2e-17  Score=96.89  Aligned_cols=91  Identities=18%  Similarity=0.101  Sum_probs=72.3

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhh--------c
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQ--------S   74 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~--------~   74 (103)
                      .....|..|.||||+|+..|+.+++++|++.+.     +++..+..|.||||+|+..++.++++++.....        .
T Consensus        38 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  112 (241)
T 1k1a_A           38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA-----SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR  112 (241)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC
T ss_pred             CCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC-----CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccccc
Confidence            456678889999999999999999999998887     788888888999999999999888888765433        1


Q ss_pred             cccCCcHHHHHHhcCchhhhHhhh
Q 043593           75 LNIKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        75 ~~~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      ...+.||||+|+..++.++++++-
T Consensus       113 ~~~g~t~L~~A~~~~~~~~~~~Ll  136 (241)
T 1k1a_A          113 NYDGLTALHVAVNTECQETVQLLL  136 (241)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CcCCCcHHHHHHHcCCHHHHHHHH
Confidence            234568888888888888887763

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.71  E-value=1.3e-17  Score=104.50  Aligned_cols=83  Identities=18%  Similarity=0.084  Sum_probs=68.9

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccccCCcH
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIKIKL   81 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~~~~tp   81 (103)
                      |+.+..|..|+||||+|+..|+.+++++|+++|.     +++.+|..|.|||++|+..++.+++++|...++.  .+.||
T Consensus       217 advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga-----d~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--~g~tp  289 (301)
T 2b0o_E          217 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA-----LVGTVNEAGETALDIARKKHHKECEELLEQAQAG--TFAFP  289 (301)
T ss_dssp             SCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--TTSSC
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--CCCCh
Confidence            4567789999999999999999999999999998     8999999999999999999999999998876655  57899


Q ss_pred             HHHHHhcCch
Q 043593           82 LDIQSLNIKF   91 (103)
Q Consensus        82 l~~A~~~~~~   91 (103)
                      ||+|+..|+.
T Consensus       290 Lh~A~~~g~~  299 (301)
T 2b0o_E          290 LHVDYSWVIS  299 (301)
T ss_dssp             CC--------
T ss_pred             hHHHHhcCCc
Confidence            9999988764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.71  E-value=8.4e-17  Score=96.80  Aligned_cols=89  Identities=17%  Similarity=0.100  Sum_probs=62.1

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      ....|..|.||||+|+..++.+++++|++.+.     +++.++..|.||||+|+..|+.++++++...+...    ..+.
T Consensus       104 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  178 (237)
T 3b7b_A          104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS-----DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD  178 (237)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCC
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-----CCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            34566677777777777777777777777776     66777777777777777777777777766544333    2345


Q ss_pred             cHHHHHHhcCchhhhHhh
Q 043593           80 KLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~   97 (103)
                      ||||+|+..++.+++++|
T Consensus       179 t~L~~A~~~~~~~~v~~L  196 (237)
T 3b7b_A          179 SPLHIAARENRYDCVVLF  196 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHhCCHhHHHHH
Confidence            777777777777777766

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.71  E-value=9.8e-18  Score=102.08  Aligned_cols=85  Identities=18%  Similarity=0.203  Sum_probs=75.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc-----ccCCcHH
Q 043593            8 TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL-----NIKIKLL   82 (103)
Q Consensus         8 d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~-----~~~~tpl   82 (103)
                      +.+|.||||.|+..|+.++++.|++ +.     +++.+|..|.||||+|+..|+.+++++|+..++..     ..+.|||
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L  115 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DR-----DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL  115 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TC-----CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CC-----CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence            3578999999999999999999999 76     89999999999999999999999999988765544     3467999


Q ss_pred             HHHHhcCchhhhHhhh
Q 043593           83 DIQSLNIKFKILDIQS   98 (103)
Q Consensus        83 ~~A~~~~~~~~~~~~~   98 (103)
                      |+|+..|+.+++++|-
T Consensus       116 ~~A~~~g~~~~v~~Ll  131 (244)
T 3ui2_A          116 HMAAGYVRPEVVEALV  131 (244)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHH
Confidence            9999999999999884

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.71  E-value=1.1e-17  Score=95.55  Aligned_cols=89  Identities=16%  Similarity=0.123  Sum_probs=75.0

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      .+..+..|.||||+|+..|+.+++++|++.+.     +++..+..|.||||+|+ .|+.+++++|+..+...    ..+.
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~   78 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGA-----NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATL   78 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTC-----CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTC
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            35678899999999999999999999999987     89999999999999985 89999999988765443    3456


Q ss_pred             c-HHHHHHhcCchhhhHhhh
Q 043593           80 K-LLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        80 t-pl~~A~~~~~~~~~~~~~   98 (103)
                      | |||+|+..|+.+++++|-
T Consensus        79 ttpL~~A~~~~~~~~v~~Ll   98 (156)
T 1bi7_B           79 TRPVHDAAREGFLDTLVVLH   98 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHH
T ss_pred             cHHHHHHHHCCCHHHHHHHH
Confidence            7 999999999999999884

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.70  E-value=1.2e-16  Score=95.50  Aligned_cols=86  Identities=22%  Similarity=0.164  Sum_probs=40.3

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhc--CcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESM--GQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~--~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      .|..|+||||+|+..|+.+++++|++.+  .     +++..+..|.||||+|+..++.++++++...+...    ..+.|
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  142 (228)
T 2dzn_A           68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-----DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI  142 (228)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCC-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-----ccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCC
Confidence            3444445555555555555555444444  2     34444444555555555555555554444332222    22335


Q ss_pred             HHHHHHhcCchhhhHhh
Q 043593           81 LLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~   97 (103)
                      |||+|+..|+.+++++|
T Consensus       143 ~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A          143 PLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHH
Confidence            55555555555555544

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.69  E-value=2.4e-16  Score=96.54  Aligned_cols=85  Identities=25%  Similarity=0.179  Sum_probs=53.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHH
Q 043593            8 TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLD   83 (103)
Q Consensus         8 d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~   83 (103)
                      +..|+||||+|+..|+.+++++|++.+.     +++..+..|.||||+|+..|+.++++++...+...    ..+.|||+
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  110 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGA-----DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFM  110 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCC-----CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHH
Confidence            5556666666666666666666666665     56666666666666666666666666655443322    23456666


Q ss_pred             HHHhcCchhhhHhh
Q 043593           84 IQSLNIKFKILDIQ   97 (103)
Q Consensus        84 ~A~~~~~~~~~~~~   97 (103)
                      +|+..|+.++++++
T Consensus       111 ~A~~~~~~~~~~~L  124 (285)
T 1wdy_A          111 EAAVYGKVKALKFL  124 (285)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHhCCHHHHHHH
Confidence            66666666666655

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.69  E-value=7.2e-17  Score=99.99  Aligned_cols=88  Identities=24%  Similarity=0.200  Sum_probs=78.2

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcH
Q 043593            6 KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKL   81 (103)
Q Consensus         6 ~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tp   81 (103)
                      ..+.+|.||||.|+..|+.++++.|++.|.     +++..|..|.||||+|+..|+.+++++|+..++..    ..+.||
T Consensus        35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp  109 (299)
T 1s70_B           35 KVKFDDGAVFLAACSSGDTEEVLRLLERGA-----DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP  109 (299)
T ss_dssp             CCEECHHHHHHHHHHHTCHHHHHHHHHHCC-----CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccccCCccHHHHHHHcCCHHHHHHHHHcCC-----CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            345678899999999999999999999997     89999999999999999999999999988765544    346799


Q ss_pred             HHHHHhcCchhhhHhhh
Q 043593           82 LDIQSLNIKFKILDIQS   98 (103)
Q Consensus        82 l~~A~~~~~~~~~~~~~   98 (103)
                      ||+|+..|+.+++++|-
T Consensus       110 L~~A~~~g~~~~v~~Ll  126 (299)
T 1s70_B          110 LHAAASCGYLDIAEYLI  126 (299)
T ss_dssp             HHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHH
Confidence            99999999999999884

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.69  E-value=3.3e-16  Score=95.93  Aligned_cols=93  Identities=17%  Similarity=0.061  Sum_probs=74.5

Q ss_pred             ccccCCCCCCcHHHHHHHcCC----HHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhh-hhhc---
Q 043593            3 QAAKITNSEDTALHIAVSDGR----SDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCL-DIQS---   74 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~-~~~~---   74 (103)
                      +....|..|.||||+|+..++    .+++++|++.+.     +++.++..|.||||+|+..|+.+++++|+. .+..   
T Consensus       174 ~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~  248 (285)
T 1wdy_A          174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA-----DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND  248 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC-----CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC
T ss_pred             CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCC-----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccc
Confidence            455678888899999888888    788888888887     788888889999999999999999888776 3332   


Q ss_pred             -cccCCcHHHHHHhcCchhhhHhhhhh
Q 043593           75 -LNIKIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        75 -~~~~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                       ...+.|||++|+..|+.+++++|-.+
T Consensus       249 ~~~~g~t~l~~A~~~~~~~i~~~Ll~~  275 (285)
T 1wdy_A          249 TDSDGKTALLLAVELKLKKIAELLCKR  275 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHc
Confidence             24557999999999999998888443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.69  E-value=8.8e-17  Score=101.46  Aligned_cols=93  Identities=19%  Similarity=0.054  Sum_probs=78.3

Q ss_pred             cccccCCCCCCcHHHHHHHcCC---HHHHHHHHHhcCcCchhhhcccccCCChHHHHHHH----cCCHHHHhhhhhhh--
Q 043593            2 IQAAKITNSEDTALHIAVSDGR---SDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAA----LGNAAFVKIGCLDI--   72 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~----~~~~~~~~~l~~~~--   72 (103)
                      |+....|.+|+||||+|+..|+   .++++.|++.+..    +++.+|..|.||||+|+.    .|+.+++++++...  
T Consensus       155 ad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~----~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~  230 (327)
T 1sw6_A          155 SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG  230 (327)
T ss_dssp             CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc----cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHH
Confidence            4567889999999999999998   6788888888754    789999999999999998    89999998875432  


Q ss_pred             -----------------------------------------------hccccCCcHHHHHHhcCchhhhHhhh
Q 043593           73 -----------------------------------------------QSLNIKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        73 -----------------------------------------------~~~~~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                                                                     .....|.||||+|+..|+.+++++|-
T Consensus       231 ~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll  303 (327)
T 1sw6_A          231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL  303 (327)
T ss_dssp             HHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             HHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                                                           22245679999999999999999884

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.68  E-value=2.3e-16  Score=101.06  Aligned_cols=92  Identities=20%  Similarity=0.127  Sum_probs=79.7

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhh-------hc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDI-------QS   74 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~-------~~   74 (103)
                      ++.+..|..|.||||+|+..|+.+++++|++.|.     +++..+..|.||||+|+..|+.+++++|+...       ..
T Consensus       157 a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  231 (373)
T 2fo1_E          157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA-----DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL  231 (373)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-----CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC
T ss_pred             CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCC-----CCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhc
Confidence            4567889999999999999999999999999998     88999999999999999999999999987543       22


Q ss_pred             cccCCcHHHHHHhcC---chhhhHhhh
Q 043593           75 LNIKIKLLDIQSLNI---KFKILDIQS   98 (103)
Q Consensus        75 ~~~~~tpl~~A~~~~---~~~~~~~~~   98 (103)
                      ...+.||||+|+..+   +.+++++|-
T Consensus       232 d~~g~t~L~~A~~~~~~~~~~~v~~Ll  258 (373)
T 2fo1_E          232 DRNGMTALMIVAHNEGRDQVASAKLLV  258 (373)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCCcchHHHHHHHH
Confidence            345679999999988   778877763

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.68  E-value=4.3e-16  Score=98.20  Aligned_cols=95  Identities=21%  Similarity=0.070  Sum_probs=64.6

Q ss_pred             ccccCCC-CCCcHHHHHHHcCCHHHHHHHHHhcCcCc----------------------------hhhhcccccCCChHH
Q 043593            3 QAAKITN-SEDTALHIAVSDGRSDIVLKLVESMGQNA----------------------------SNVLKLQNEKGNTAL   53 (103)
Q Consensus         3 ~~~~~d~-~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~----------------------------~~~~~~~~~~g~tpl   53 (103)
                      +.+..|. .|+||||+|+..|+.+++++|+++|....                            ..+++..|..|.||+
T Consensus        50 dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l  129 (337)
T 4g8k_A           50 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAF  129 (337)
T ss_dssp             CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHH
T ss_pred             CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHH
Confidence            3444443 47888888888888888888888765210                            002344566778888


Q ss_pred             HHHHHcCCHHHHhhhhhhhhcc--------------ccCCcHHHHHHhcCchhhhHhh
Q 043593           54 HLAAALGNAAFVKIGCLDIQSL--------------NIKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        54 ~~a~~~~~~~~~~~l~~~~~~~--------------~~~~tpl~~A~~~~~~~~~~~~   97 (103)
                      ++|+..|+.++++++...++..              ..+.||||+|+..|+.+++++|
T Consensus       130 ~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~L  187 (337)
T 4g8k_A          130 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL  187 (337)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHH
Confidence            8888888888887765443222              2245888888888888888876

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.67  E-value=2.8e-16  Score=82.63  Aligned_cols=66  Identities=27%  Similarity=0.342  Sum_probs=60.9

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhh
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDI   72 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   72 (103)
                      ++.+..|..|+||||+|+..++.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|...+
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-----~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           26 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4567889999999999999999999999999998     89999999999999999999999999987654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.67  E-value=1.2e-16  Score=98.83  Aligned_cols=95  Identities=22%  Similarity=0.150  Sum_probs=71.9

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCch----------------------------------hhhcccccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNAS----------------------------------NVLKLQNEKG   49 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~----------------------------------~~~~~~~~~g   49 (103)
                      .+..|.+|+||||+|+..|+.+++++|++.+..+..                                  .+.+..+..|
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g  183 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG  183 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence            467789999999999999999999999998852000                                  0122234557


Q ss_pred             ChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHHHHHhcCchhhhHhhh
Q 043593           50 NTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        50 ~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      .||||+|+..|+.+++++|+..++..    ..|.||||+|+..|+.+++++|-
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll  236 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL  236 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            88888888999999998887655443    45569999999999999888874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.66  E-value=6.2e-16  Score=97.19  Aligned_cols=86  Identities=20%  Similarity=0.190  Sum_probs=53.7

Q ss_pred             CCCCCCcHHHHHHHc---CCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            7 ITNSEDTALHIAVSD---GRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      .+..|.||||+|+..   +..+++++|++.+.     +++.++..|.||||+|+..|+.+++++|+..++..    ..+.
T Consensus       207 ~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~  281 (351)
T 3utm_A          207 QPQSHETALHCAVASLHPKRKQVAELLLRKGA-----NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ  281 (351)
T ss_dssp             CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCC-----CcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            455666666666666   33566666666665     56666666666666666666666666665443332    2345


Q ss_pred             cHHHHHHhcCchhhhHhh
Q 043593           80 KLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~   97 (103)
                      ||||+|+..|+.+++++|
T Consensus       282 t~L~~A~~~~~~~~v~~L  299 (351)
T 3utm_A          282 TALHRAALAGHLQTCRLL  299 (351)
T ss_dssp             CHHHHHHHHTCHHHHHHH
T ss_pred             CHHHHHHHcCcHHHHHHH
Confidence            666666666666666665

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.64  E-value=1e-15  Score=91.76  Aligned_cols=89  Identities=16%  Similarity=0.093  Sum_probs=50.1

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcc-cccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKL-QNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      ....|..|.||||+|+..|+.+++++|++.+.     +++. .+..|.||||+|+..|+.++++++...+...    ..+
T Consensus        35 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-----~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  109 (240)
T 3eu9_A           35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGA-----IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEG  109 (240)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC-----cchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            34455566666666666666666666666655     3332 2334566666666666666666655433222    233


Q ss_pred             CcHHHHHHhcCchhhhHhh
Q 043593           79 IKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~   97 (103)
                      .|||++|+..|+.++++++
T Consensus       110 ~t~l~~A~~~~~~~~~~~L  128 (240)
T 3eu9_A          110 CSCIHLAAQFGHTSIVAYL  128 (240)
T ss_dssp             CCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHcCHHHHHHHH
Confidence            4666666666666666655

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.63  E-value=6.6e-17  Score=95.15  Aligned_cols=84  Identities=11%  Similarity=0.036  Sum_probs=68.5

Q ss_pred             CCCCcHHHHHHHcCCH----HHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCC------HHHHhhhhhhhhcc---
Q 043593            9 NSEDTALHIAVSDGRS----DIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN------AAFVKIGCLDIQSL---   75 (103)
Q Consensus         9 ~~g~t~lh~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~------~~~~~~l~~~~~~~---   75 (103)
                      ..|+||||+|+..++.    +++++|++.|.     +++.+|..|.||||+|+..++      .+++++|+..++..   
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Ga-----dvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~  110 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGA-----DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL  110 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTC-----CSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSC
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCC-----CCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCcc
Confidence            6799999999999975    48999999998     899999999999999999887      56788877665544   


Q ss_pred             -ccCC-cHHHHHHhcCc-----hhhhHhh
Q 043593           76 -NIKI-KLLDIQSLNIK-----FKILDIQ   97 (103)
Q Consensus        76 -~~~~-tpl~~A~~~~~-----~~~~~~~   97 (103)
                       ..|. ||||+|+..+.     .+++++|
T Consensus       111 d~~g~ttpLh~A~~~~~~~~~~~~iv~~L  139 (186)
T 3t8k_A          111 YKPYKIVVFKNIFNYFVDENEMIPLYKLI  139 (186)
T ss_dssp             BGGGTBCTTGGGGGCCSCHHHHHHHHHHH
T ss_pred             CCCcCchHHHHHHHcCCChhhHHHHHHHH
Confidence             4567 99999998544     3466655

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.62  E-value=4.6e-15  Score=88.91  Aligned_cols=88  Identities=16%  Similarity=0.067  Sum_probs=60.0

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc-----ccCC
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL-----NIKI   79 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~-----~~~~   79 (103)
                      ...|..|.|+|+.|+..|+.++++.|++.+.     +++..+..|.||||+|+..|+.++++++...+...     ..+.
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~   77 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGY-----DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS   77 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTB
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCC-----CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCC
Confidence            3456677777777777777777777777765     66667777777777777777777777765543322     2245


Q ss_pred             cHHHHHHhcCchhhhHhh
Q 043593           80 KLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~   97 (103)
                      |||++|+..|+.+++++|
T Consensus        78 t~L~~A~~~~~~~~v~~L   95 (240)
T 3eu9_A           78 TPLHWATRQGHLSMVVQL   95 (240)
T ss_dssp             CHHHHHHHHTCHHHHHHH
T ss_pred             ChhHHHHHcCCHHHHHHH
Confidence            777777777777777666

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.59  E-value=2.6e-16  Score=101.34  Aligned_cols=90  Identities=14%  Similarity=0.153  Sum_probs=64.4

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc------ccCC
Q 043593            6 KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL------NIKI   79 (103)
Q Consensus         6 ~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~------~~~~   79 (103)
                      ..+..|.||||+|+..|+.+++++|++.++.....+++..+   .||||+|+..|+.+++++|...++..      ..+.
T Consensus       123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~  199 (376)
T 2aja_A          123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY  199 (376)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCC
Confidence            34556788999999999999999999888510000222222   78999999999999998887665442      2356


Q ss_pred             cHHHHHH-hcCchhhhHhhh
Q 043593           80 KLLDIQS-LNIKFKILDIQS   98 (103)
Q Consensus        80 tpl~~A~-~~~~~~~~~~~~   98 (103)
                      ||||+|+ ..|+.+++++|-
T Consensus       200 TpL~~Aa~~~G~~eiv~~Ll  219 (376)
T 2aja_A          200 YAFRWAAVGRGHHNVINFLL  219 (376)
T ss_dssp             HHHHHHHSTTCCHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHH
Confidence            8999998 889988888873

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.55  E-value=1.9e-14  Score=89.18  Aligned_cols=68  Identities=21%  Similarity=0.251  Sum_probs=62.8

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS   74 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~   74 (103)
                      |+.+..|..|+||||+|+..|+.+++++|++.|.     +++.+|..|.||||+|+..|+.+++++|...++.
T Consensus       196 a~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga-----d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          196 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA-----SIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             SCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4567889999999999999999999999999998     8999999999999999999999999998876553

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.54  E-value=2.6e-14  Score=77.29  Aligned_cols=62  Identities=26%  Similarity=0.359  Sum_probs=57.3

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhh
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIG   68 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l   68 (103)
                      ++....|..|+||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|
T Consensus        48 ~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga-----~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           48 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA-----DVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            3566789999999999999999999999999987     8999999999999999999999999865

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.54  E-value=1.4e-14  Score=93.06  Aligned_cols=86  Identities=9%  Similarity=-0.080  Sum_probs=74.9

Q ss_pred             CCCCcHHHHHHHc-CCHHHHHHHHHhcCcCchhhhcccc--cCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcH
Q 043593            9 NSEDTALHIAVSD-GRSDIVLKLVESMGQNASNVLKLQN--EKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKL   81 (103)
Q Consensus         9 ~~g~t~lh~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~--~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tp   81 (103)
                      ..+.|+||.|+.. ++.++++.|++.|.     +++..+  ..|.||||+|+..|+.+++++|+..++..    ..+.||
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Ga-----dvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~Tp  271 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGA-----DVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGP  271 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTC-----CTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCC-----CCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            3456799999999 99999999999998     788887  88999999999999999999988765544    355799


Q ss_pred             HHHHHhcCchhhhHhhhh
Q 043593           82 LDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        82 l~~A~~~~~~~~~~~~~~   99 (103)
                      ||+|+..|+.+++++|-.
T Consensus       272 Lh~A~~~g~~~~v~~LL~  289 (368)
T 3jue_A          272 LHHATILGHTGLACLFLK  289 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHH
Confidence            999999999999998843

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.54  E-value=1e-15  Score=98.59  Aligned_cols=81  Identities=11%  Similarity=-0.041  Sum_probs=72.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcc--cccCCChHHHHHH-HcCCHHHHhhhhhhhhccccCCcHHHHHHhc
Q 043593           12 DTALHIAVSDGRSDIVLKLVESMGQNASNVLKL--QNEKGNTALHLAA-ALGNAAFVKIGCLDIQSLNIKIKLLDIQSLN   88 (103)
Q Consensus        12 ~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~--~~~~g~tpl~~a~-~~~~~~~~~~l~~~~~~~~~~~tpl~~A~~~   88 (103)
                      +||||+||..|+.+++++|++.|.     +++.  .|..|.||||+|+ ..|+.+++++|...+.   .+.|||++|+..
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga-----~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga---~~~taL~~Aa~~  235 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAP-----TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV---MLAYAEIHEFEY  235 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCG-----GGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH---HHHHHHHCTTTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCC-----ccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC---ccchHHHHHHHC
Confidence            899999999999999999999997     6666  7888999999999 9999999999887543   367999999999


Q ss_pred             CchhhhHhhhhh
Q 043593           89 IKFKILDIQSLN  100 (103)
Q Consensus        89 ~~~~~~~~~~~~  100 (103)
                      |+.+++++|..+
T Consensus       236 g~~evv~lL~~~  247 (376)
T 2aja_A          236 GEKYVNPFIARH  247 (376)
T ss_dssp             TTTTHHHHHHHH
T ss_pred             CCHHHHHHHHhc
Confidence            999999998543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.48  E-value=1.6e-14  Score=78.35  Aligned_cols=69  Identities=25%  Similarity=0.326  Sum_probs=61.9

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL   75 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~   75 (103)
                      ++....|..|+||||+|+..++.+++++|++.+.     +++.+|..|.||||+|+..++.+++++|+..++..
T Consensus        33 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~  101 (115)
T 2l6b_A           33 ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA-----DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV  101 (115)
T ss_dssp             CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC-----CTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC-----CCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence            3456789999999999999999999999999987     89999999999999999999999999987665444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.002
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.003
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 1e-08
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 12 DTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN 61
          +  LH A  +     V +L+ S        L  +++ G   LH + +   
Sbjct: 1  NYPLHQACMENEFFKVQELLHSKPSL----LLQKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (77), Expect = 0.001
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAA 57
           T L  A+++G  D  + LVE  G        L + KG  A  +A 
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAE----YDLVDNKGAKAEDVAL 214

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 1e-08
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 5  AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF 64
            +T   DTALH+AV       +  L+          L LQN+ G TALHLAA LG A+ 
Sbjct: 3  GYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGH-EYLDLQNDLGQTALHLAAILGEAST 60

Query: 65 VKIGC 69
          V+   
Sbjct: 61 VEKLY 65

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 3e-08
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 12 DTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLA 56
          D+ LH+A+      + ++++  +  + + +   QN    T LHLA
Sbjct: 3  DSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (73), Expect = 0.003
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 5/56 (8%)

Query: 12  DTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            TALH+AV     D+V      +   A         +G +   L     +    + 
Sbjct: 146 RTALHLAVDLQNPDLV---SLLLKCGADV--NRVTYQGYSPYQLTWGRPSTRIQQQ 196

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 1e-07
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 12 DTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLA 56
          DT LHIAV  G    V +LV    Q    +  + N    T LHLA
Sbjct: 4  DTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 4e-05
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 15  LHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVK 66
           LH A   G   +V  LV S G +      L+N   +T L +A +      ++
Sbjct: 181 LHSASGRGLLPLVRTLVRS-GAD----SSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (75), Expect = 0.002
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 47 EKGNTALHLAAALGNAAFVK 66
          E G+T LH+A   GN   V 
Sbjct: 1  EDGDTPLHIAVVQGNLPAVH 20

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.7 bits (104), Expect = 2e-07
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
                T + +A  +GR ++V+ L++   Q AS  ++  +   +TA  LA A  +   V I
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVMYLIQ---QGAS--VEAVDATDHTARQLAQANNHHNIVDI 272

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.9 bits (94), Expect = 6e-06
 Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 5/56 (8%)

Query: 12 DTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          ++ + +      S  + + +     N      +      T LH  A+  +A   + 
Sbjct: 1  ESPIKLHTEAAGSYAITEPITRESVNI-----IDPRHNRTVLHWIASNSSAEKSED 51

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-07
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
          T LH+A   G   IV  L++   + AS    + N K  T LH+AA  G+    K 
Sbjct: 2  TPLHVASFMGHLPIVKNLLQ---RGAS--PNVSNVKVETPLHMAARAGHTEVAKY 51

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 1e-06
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           T    + LH A   G +DIV  L+++ G +        +  G T L +A  LG  +   +
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKN-GAS----PNEVSSDGTTPLAIAKRLGYISVTDV 381

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 8  TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
              +T LH+A   G +++   L++    N + V   + +   T LH AA +G+   VK+
Sbjct: 30 NVKVETPLHMAARAGHTEVAKYLLQ----NKAKV-NAKAKDDQTPLHCAARIGHTNMVKL 84

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 6e-07
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 8   TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
                T L +AV      +V +L+E         +   +  G TAL LA  L      ++
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAEL 271

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 3e-06
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 11 EDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGC 69
          ++  L  AV +   D+V +L+E      +NV   + E G T LH A  +     V++  
Sbjct: 5  DNHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.8 bits (86), Expect = 8e-05
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAA 57
               T LH A   G+ +    LVE         ++  N+ G TA  +A 
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILVE---NLCD--MEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.1 bits (79), Expect = 6e-04
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 5  AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN 61
           K+   +      A S G ++ VL+L+E  G +    +   N  G TALH A    N
Sbjct: 34 TKVKFDDGAVFLAACSSGDTEEVLRLLER-GAD----INYANVDGLTALHQACIDDN 85

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (81), Expect = 3e-04
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 5   AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAF 64
              TN +++  +    + +  I+  L   +    +N+L  Q+  G+T L++AA LGN + 
Sbjct: 217 QSGTNEKESKPNDKNGERKDSILENL--DLKWIIANMLNAQDSNGDTCLNIAARLGNISI 274

Query: 65  VKI 67
           V  
Sbjct: 275 VDA 277

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.9 bits (76), Expect = 0.002
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 9   NSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAA 57
           ++ DT L+IA   G   IV  L++     A     + N+ G   +   A
Sbjct: 257 SNGDTCLNIAARLGNISIVDALLD---YGAD--PFIANKSGLRPVDFGA 300

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.5 bits (80), Expect = 4e-04
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 29 KLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVK 66
          +++  +    + +    ++ G T+LHLAA    A   K
Sbjct: 3  QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAK 40

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 33.2 bits (74), Expect = 0.003
 Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
           T L +A  +G  +    L+++   N     ++ +        +A+   +   V++
Sbjct: 158 TPLFLAAREGSYEASKALLDN-FAN----REITDHMDRLPRDVASERLHHDIVRL 207

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 35.3 bits (80), Expect = 5e-04
 Identities = 12/55 (21%), Positives = 16/55 (29%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
             L     +   D +  L+   G  A           N  L LA  LGN     +
Sbjct: 281 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 335

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 35.3 bits (80), Expect = 6e-04
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 13  TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
               +A   G S   L  +  +  +   V K+   +   A  LAA  G+   +  
Sbjct: 92  VICFVAAITGCSS-ALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNR 144

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (73), Expect = 0.003
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 44  LQNEKGNTALHLAAALGNAAFVKI 67
            +N KG+TA  LA   G    V +
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSL 151

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.9 bits (73), Expect = 0.003
 Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 28  LKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKI 67
            ++VE + +  ++V   Q++   TA  ++   GN    +I
Sbjct: 113 QEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEI 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.78
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.77
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.77
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.76
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.76
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.76
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.72
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.71
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.71
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.71
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.7
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.69
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.67
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.67
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.67
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.66
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.65
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.64
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.61
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.6
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.59
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.58
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.58
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.57
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.57
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.56
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.55
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.54
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.53
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.51
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.45
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.24

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=2.8e-20  Score=105.40  Aligned_cols=89  Identities=29%  Similarity=0.260  Sum_probs=77.9

Q ss_pred             cCCCCCCcHHHHHHHc---CCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            6 KITNSEDTALHIAVSD---GRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         6 ~~d~~g~t~lh~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      ..+..|+||||+|+..   ++.+++++|+++|.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..|
T Consensus        40 ~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga-----din~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g  114 (154)
T d1dcqa1          40 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG-----NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESG  114 (154)
T ss_dssp             SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCC-----ChhhhhhhhccccccccccccccccccccccCccccccCCCC
Confidence            3477899999999974   67899999999998     89999999999999999999999999987665443    455


Q ss_pred             CcHHHHHHhcCchhhhHhhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      .||||+|+..|+.+++++|.-
T Consensus       115 ~tpL~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1         115 ETPLDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHH
Confidence            799999999999999999854

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.3e-20  Score=100.52  Aligned_cols=91  Identities=22%  Similarity=0.066  Sum_probs=76.9

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccc-----
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLN-----   76 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~-----   76 (103)
                      ++.+..|.+|+||||+|+..++.+++++|++.+.     +++.+|..|+||||+|+..|+.+++++|+..++..+     
T Consensus        25 ~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~-----~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~   99 (130)
T d1ycsb1          25 DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV-----NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS   99 (130)
T ss_dssp             SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS
T ss_pred             CCcccccccccccccccccccccccccccccccc-----ccccccccCcccccccchhhHHHHHHHHHHcCCCcccccCC
Confidence            4567889999999999999999999999999987     789999999999999999999999999887654432     


Q ss_pred             cCCcHHHHH--HhcCchhhhHhh
Q 043593           77 IKIKLLDIQ--SLNIKFKILDIQ   97 (103)
Q Consensus        77 ~~~tpl~~A--~~~~~~~~~~~~   97 (103)
                      .+.||++++  ...|+.+++++|
T Consensus       100 ~~~~~~~~~~a~~~g~~eiv~~L  122 (130)
T d1ycsb1         100 DMQTAADKCEEMEEGYTQCSQFL  122 (130)
T ss_dssp             SCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             CCCCHHHHHHHHHcChHHHHHHH
Confidence            345776665  567889999987

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.3e-18  Score=104.26  Aligned_cols=94  Identities=19%  Similarity=0.104  Sum_probs=79.7

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      .....|.+|.||||+|+..++.+++++|++.+..    .....+..|.||||+|+..|+.+++++|.+.++..    ..|
T Consensus       150 ~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~----~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g  225 (255)
T d1oy3d_         150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD----LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG  225 (255)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             ccccccccCcccccccccccccccccchhccccc----ccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCC
Confidence            3457899999999999999999999999999873    33456788999999999999999999987654333    445


Q ss_pred             CcHHHHHHhcCchhhhHhhhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      .||||+|+..++.+++++|--+
T Consensus       226 ~t~L~~A~~~~~~~i~~~Ll~~  247 (255)
T d1oy3d_         226 RTPLGSALLRPNPILARLLRAH  247 (255)
T ss_dssp             CCHHHHHHTSSCHHHHHHHHHT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHc
Confidence            7999999999999999998544

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=2.5e-19  Score=97.29  Aligned_cols=81  Identities=20%  Similarity=0.141  Sum_probs=58.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc----cccCCcHHHHHHh
Q 043593           12 DTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS----LNIKIKLLDIQSL   87 (103)
Q Consensus        12 ~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~----~~~~~tpl~~A~~   87 (103)
                      .|||++|+..|+.++++.|++.|.     +++.++..|.||||+|+..|+.++++++...+..    ...|.||||+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~-----d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGE-----DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTC-----CCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhh-----ccccccccccccccccccccccccccccccccceeeecccccccchhhhhh
Confidence            367778888888888887777776     6777777777888888877777777776544332    2345678888887


Q ss_pred             cCchhhhHhh
Q 043593           88 NIKFKILDIQ   97 (103)
Q Consensus        88 ~~~~~~~~~~   97 (103)
                      .|+.+++++|
T Consensus        78 ~~~~~~v~~L   87 (118)
T d1myoa_          78 EGHVSCVKLL   87 (118)
T ss_dssp             TTCCHHHHHH
T ss_pred             cCchhhhhhh
Confidence            7777777766

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.4e-19  Score=97.41  Aligned_cols=81  Identities=20%  Similarity=0.163  Sum_probs=72.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHHHHHhc
Q 043593           13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLDIQSLN   88 (103)
Q Consensus        13 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~~A~~~   88 (103)
                      +.|+.||..|+.+++++|++.|.     +++.+|..|.||||+|+..++.++++++...+...    ..+.||||+|+..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~-----d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~   77 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVD-----DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC   77 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTS-----SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCC-----CccccccccccccccccccccccccccccccccccccccccCcccccccchh
Confidence            57999999999999999999998     89999999999999999999999999887654333    4567999999999


Q ss_pred             CchhhhHhhh
Q 043593           89 IKFKILDIQS   98 (103)
Q Consensus        89 ~~~~~~~~~~   98 (103)
                      |+.+++++|-
T Consensus        78 g~~~~v~~Ll   87 (130)
T d1ycsb1          78 NNVQVCKFLV   87 (130)
T ss_dssp             TCHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            9999999984

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.2e-18  Score=104.44  Aligned_cols=90  Identities=29%  Similarity=0.244  Sum_probs=77.3

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcH
Q 043593            6 KITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKL   81 (103)
Q Consensus         6 ~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tp   81 (103)
                      -.|++|.||||+||..|+.+++++|++.++...  .++.++..|.||||+|+..|+.+++++|+..++..    ..+.||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~--~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE--YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG--GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--cccCcCCCCCCccchHHhhcccccccccccccccccccccccchh
Confidence            368999999999999999999999999986211  36678899999999999999999999988766544    345799


Q ss_pred             HHHHHhcCchhhhHhh
Q 043593           82 LDIQSLNIKFKILDIQ   97 (103)
Q Consensus        82 l~~A~~~~~~~~~~~~   97 (103)
                      |++|+..++.++++++
T Consensus        82 L~~A~~~~~~~~~~~L   97 (255)
T d1oy3d_          82 LHLACRVRAHTCACVL   97 (255)
T ss_dssp             HHHHTTTTCHHHHHHH
T ss_pred             hhhhhccCchHHHHHH
Confidence            9999999999998887

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=7.7e-20  Score=99.36  Aligned_cols=80  Identities=16%  Similarity=0.096  Sum_probs=71.0

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----cc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~   77 (103)
                      ++....|.+|+||||+|+..|+.+++++|++.+.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..
T Consensus        26 ~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~-----din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~  100 (118)
T d1myoa_          26 EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA-----DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD  100 (118)
T ss_dssp             CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSC-----TTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSS
T ss_pred             hccccccccccccccccccccccccccccccccc-----eeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCC
Confidence            4567889999999999999999999999999998     89999999999999999999999999988765444    45


Q ss_pred             CCcHHHHHH
Q 043593           78 KIKLLDIQS   86 (103)
Q Consensus        78 ~~tpl~~A~   86 (103)
                      |.|||++|.
T Consensus       101 G~t~l~~a~  109 (118)
T d1myoa_         101 GLTALEATD  109 (118)
T ss_dssp             TCCCCCTCS
T ss_pred             CCCHHHHHh
Confidence            579999884

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=4e-18  Score=99.51  Aligned_cols=91  Identities=23%  Similarity=0.192  Sum_probs=81.1

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      .....+..|.|||++++..+...+++.++..+.     +++..|..|.||||+|+..|+.+++++|+..++..    ..|
T Consensus       115 ~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~-----~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g  189 (209)
T d1ot8a_         115 DINAADNSGKTALHWAAAVNNTEAVNILLMHHA-----NRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMD  189 (209)
T ss_dssp             CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cccccCCCCCCcchhhcccCcceeeeeeccccc-----cccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCC
Confidence            346788999999999999999999999999987     78999999999999999999999999987765443    445


Q ss_pred             CcHHHHHHhcCchhhhHhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~   98 (103)
                      .||||+|+..|+.+++++|+
T Consensus       190 ~Tpl~~A~~~~~~~iv~lL~  209 (209)
T d1ot8a_         190 RLPRDVASERLHHDIVRLLD  209 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHC
T ss_pred             CCHHHHHHHcCCHHHHhhcC
Confidence            79999999999999999874

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.8e-19  Score=97.41  Aligned_cols=91  Identities=9%  Similarity=-0.060  Sum_probs=73.2

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCC-hHHHHHHHcCCHHHHhhhhhhhhcc----c
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGN-TALHLAAALGNAAFVKIGCLDIQSL----N   76 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~-tpl~~a~~~~~~~~~~~l~~~~~~~----~   76 (103)
                      |+....|..|.||+|.|+ .|+.+++++|++.|.     +++.++..+. +|||+|+..|+.+++++|...++..    .
T Consensus        27 ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga-----~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~  100 (125)
T d1bi7b_          27 ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA-----EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA  100 (125)
T ss_dssp             CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC-----CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT
T ss_pred             Cccccccccccccccccc-ccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccC
Confidence            456678889999988664 788999999999887     7888877765 6999999999999999887655433    4


Q ss_pred             cCCcHHHHHHhcCchhhhHhhh
Q 043593           77 IKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        77 ~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      .|.||||+|+..|+.+++++|.
T Consensus       101 ~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_         101 WGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHH
Confidence            5579999999999999998873

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.9e-17  Score=97.23  Aligned_cols=91  Identities=22%  Similarity=0.182  Sum_probs=76.8

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhh----cccc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQ----SLNI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~----~~~~   77 (103)
                      ++.+..|.+|.||||+|+..|+.+++++|++.|.     +++..+..|.||||+++..++.++++++.....    ....
T Consensus        94 ~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~-----d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~  168 (223)
T d1uoha_          94 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA-----NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE  168 (223)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             ceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCC-----CCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCC
Confidence            3456789999999999999999999999999987     788889999999999999999998887654433    3345


Q ss_pred             CCcHHHHHHhcCchhhhHhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~   97 (103)
                      +.||||+|+..|+.+++++|
T Consensus       169 g~TpL~~Aa~~g~~~~v~~L  188 (223)
T d1uoha_         169 GNTPLHLACDEERVEEAKLL  188 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHH
T ss_pred             CCceeccccccCcHHHHHHH
Confidence            67999999999999999887

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.71  E-value=5.6e-19  Score=110.93  Aligned_cols=91  Identities=13%  Similarity=0.073  Sum_probs=57.7

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccc--cCCChHHHHHHHcCCHHHHhhhhhhhhcc----
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQN--EKGNTALHLAAALGNAAFVKIGCLDIQSL----   75 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~--~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----   75 (103)
                      |.++.+|.+|+||||+||..||.+++++|++.|.     +++..+  ..|.||||+|+..|+.+++++|+..+...    
T Consensus       117 ~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~-----~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~  191 (346)
T d2ajaa1         117 EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP-----TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM  191 (346)
T ss_dssp             SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT-----TTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHH
T ss_pred             CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-----CccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccc
Confidence            3455666777777777777777777777777765     455443  34677777777777777777766543221    


Q ss_pred             ---ccCCcHHHHHHhcCchhhhHhh
Q 043593           76 ---NIKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        76 ---~~~~tpl~~A~~~~~~~~~~~~   97 (103)
                         ..+.||++.|+.+|+.+++++|
T Consensus       192 ~~~~~~~t~l~~A~~~g~~~iv~~L  216 (346)
T d2ajaa1         192 IQAENYYAFRWAAVGRGHHNVINFL  216 (346)
T ss_dssp             HHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred             cccCCCcchhhHHhhcCHHHHHHHH
Confidence               1123566666677777777766

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=3.8e-17  Score=100.61  Aligned_cols=50  Identities=22%  Similarity=0.195  Sum_probs=46.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCC
Q 043593            7 ITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGN   61 (103)
Q Consensus         7 ~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~   61 (103)
                      .|.+|+||||+||..|+.+++++|++.|+     +++.+|..|.||||.|+..++
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~ga-----d~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHGS-----NRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTBCCTTCCCHHHHHHHSSH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCC-----CCCcCCcccccHHHHhhhccc
Confidence            48999999999999999999999999998     899999999999999997654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.2e-17  Score=90.85  Aligned_cols=91  Identities=20%  Similarity=0.199  Sum_probs=73.1

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhh---hhccccCC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLD---IQSLNIKI   79 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~---~~~~~~~~   79 (103)
                      .....+..|.+|++.++..++.++++.+++.+.     +++.+|..|.||||+|+..|+.+++++|...   ......|.
T Consensus        60 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~-----~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~~~~~d~~G~  134 (156)
T d1bd8a_          60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA-----DVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGL  134 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSC
T ss_pred             ccccccccccccccccccccccccccccccccc-----ccccccCCCCeeeccccccccccccccccccccccccCCCCC
Confidence            345567778888888888888888888888887     7888888899999999999999999876532   22234567


Q ss_pred             cHHHHHHhcCchhhhHhhh
Q 043593           80 KLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~~   98 (103)
                      ||||+|+..|+.+++++|.
T Consensus       135 TpL~~A~~~g~~~iv~~Ll  153 (156)
T d1bd8a_         135 TPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             CHHHHHHHSCCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHH
Confidence            9999999999999998874

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.8e-17  Score=102.59  Aligned_cols=92  Identities=21%  Similarity=0.168  Sum_probs=77.6

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      +....+..+.||||.++..++.++++.+++.|.     +++.+|..|.||||+|++.|+.+++++|+..++..    ..|
T Consensus       289 ~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~-----~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G  363 (408)
T d1n11a_         289 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA-----DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG  363 (408)
T ss_dssp             CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSS
T ss_pred             ccccccccccccchhhcccCcceeeeeeccccc-----cccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            345566777888888888888888888888877     78899999999999999999999999988766554    456


Q ss_pred             CcHHHHHHhcCchhhhHhhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQSL   99 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~~   99 (103)
                      .||||+|+..|+.+++++|+.
T Consensus       364 ~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         364 TTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHH
Confidence            799999999999999998853

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.69  E-value=2.1e-18  Score=108.30  Aligned_cols=88  Identities=17%  Similarity=0.156  Sum_probs=72.2

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHH---HHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc------c
Q 043593            6 KITNSEDTALHIAVSDGRSDIVLK---LVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL------N   76 (103)
Q Consensus         6 ~~d~~g~t~lh~a~~~~~~~~~~~---Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~------~   76 (103)
                      ..|..|.||||+||..||.++++.   |++.+.     +++.+|..|.||||+|+..|+.+++++|+..++..      .
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~-----~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~  159 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDE-----IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA  159 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCS-----SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCC-----cccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccc
Confidence            457789999999999999877665   678887     89999999999999999999999999988654432      2


Q ss_pred             cCCcHHHHHHhcCchhhhHhhh
Q 043593           77 IKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        77 ~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      .|.||||+|+.+|+.+++++|-
T Consensus       160 ~g~t~L~~Aa~~g~~~iv~~Ll  181 (346)
T d2ajaa1         160 ENYHAFRLAAENGHLHVLNRLC  181 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCChhHHHHHHhhHHHHHHHH
Confidence            3579999999999999999984

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.6e-17  Score=102.66  Aligned_cols=81  Identities=22%  Similarity=0.174  Sum_probs=73.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHHHHHh
Q 043593           12 DTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLDIQSL   87 (103)
Q Consensus        12 ~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~~A~~   87 (103)
                      .||||+||..|+.++++.|++.|+     +++..|..|.||||+|+..|+.+++++|++.++..    ..+.|||++|+.
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~-----~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~   75 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGA-----SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR   75 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTC-----CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            499999999999999999999997     89999999999999999999999999998776544    345799999999


Q ss_pred             cCchhhhHhh
Q 043593           88 NIKFKILDIQ   97 (103)
Q Consensus        88 ~~~~~~~~~~   97 (103)
                      .|+.++++.+
T Consensus        76 ~g~~~~~~~L   85 (408)
T d1n11a_          76 IGHTNMVKLL   85 (408)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHH
Confidence            9999998876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=3.2e-16  Score=87.55  Aligned_cols=69  Identities=19%  Similarity=0.097  Sum_probs=55.3

Q ss_pred             HHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHHHHHhcCchhhhHhhh
Q 043593           25 DIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        25 ~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      +.++++...+.     +.+.+|..|.||||+|+..|+.++++++...++..    ..|.|||++|+.+|+.+++++|+
T Consensus        81 ~~~~~l~~~~~-----~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL~  153 (153)
T d1awcb_          81 NIVEVLLKHGA-----DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             HHHHHHHTTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             eeeecccccCC-----ccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhCc
Confidence            34445555554     56777889999999999999999999987665443    45679999999999999999885

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.8e-17  Score=89.29  Aligned_cols=84  Identities=17%  Similarity=0.131  Sum_probs=71.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccc----cC-CcHHHH
Q 043593           10 SEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLN----IK-IKLLDI   84 (103)
Q Consensus        10 ~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~----~~-~tpl~~   84 (103)
                      .+.++||+|+..|+.+++++|++.|.     +++.++..|.||+|.|+ .|+.+++++|+..++..+    .+ .||||+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~ga-----d~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGA-----NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   75 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTC-----CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCC-----ccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            45789999999999999999999997     89999999999999775 689999999887655442    23 379999


Q ss_pred             HHhcCchhhhHhhhh
Q 043593           85 QSLNIKFKILDIQSL   99 (103)
Q Consensus        85 A~~~~~~~~~~~~~~   99 (103)
                      |+..|+.+++++|-.
T Consensus        76 A~~~g~~~~v~~Ll~   90 (125)
T d1bi7b_          76 AAREGFLDTLVVLHR   90 (125)
T ss_dssp             HHHHTCHHHHHHHHH
T ss_pred             ccccccccccccccc
Confidence            999999999998843

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.9e-16  Score=93.68  Aligned_cols=89  Identities=22%  Similarity=0.184  Sum_probs=77.7

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccC
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIK   78 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~   78 (103)
                      +.+..|..|.||||+++..++..++++|...+.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..|
T Consensus       128 d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~-----~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g  202 (223)
T d1uoha_         128 NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA-----STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEE  202 (223)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             CCCCcCCCCCccchhhhhcCCcchhhhhccccc-----eeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCC
Confidence            456788999999999999999999999999987     89999999999999999999999999987665444    456


Q ss_pred             CcHHHHHHhcCchhhhHhh
Q 043593           79 IKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~   97 (103)
                      +||||+|. .|+.++++.|
T Consensus       203 ~tpl~~A~-~~~~~i~~~L  220 (223)
T d1uoha_         203 KTPLQVAK-GGLGLILKRM  220 (223)
T ss_dssp             CCHHHHCC-TTHHHHHHHH
T ss_pred             CCHHHHHH-CCCHHHHhcc
Confidence            79999984 6888888765

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.66  E-value=2.8e-16  Score=94.69  Aligned_cols=91  Identities=26%  Similarity=0.203  Sum_probs=78.5

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      ....+..|+|+||.++..++.+++++++.....    +.+.+|..|.||||+|+..|+.+++++|+..++..    ..|.
T Consensus       180 ~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~----~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~  255 (277)
T d2fo1e1         180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS----NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH  255 (277)
T ss_dssp             TSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSC
T ss_pred             ccccccCCCCccccccccccccccccccccccc----cccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCC
Confidence            345678899999999999999999987766554    78889999999999999999999999987765444    4567


Q ss_pred             cHHHHHHhcCchhhhHhhh
Q 043593           80 KLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~~   98 (103)
                      ||||+|+..|+.+++++|.
T Consensus       256 T~L~~A~~~~~~~iv~lL~  274 (277)
T d2fo1e1         256 TARQLAQANNHHNIVDIFD  274 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999985

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.65  E-value=4.4e-17  Score=98.27  Aligned_cols=85  Identities=16%  Similarity=0.090  Sum_probs=71.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHH--------HhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----c
Q 043593            9 NSEDTALHIAVSDGRSDIVLKLV--------ESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----N   76 (103)
Q Consensus         9 ~~g~t~lh~a~~~~~~~~~~~Ll--------~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~   76 (103)
                      ..|+||||+||..|+.++++.|+        +.|.     +++.+|..|.||||+|+..|+.+++++|++.++..    .
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Ga-----dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~  105 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-----DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK  105 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC-----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCC-----CccccCCCCCeeeccccccccccccccccccccccccccc
Confidence            46999999999999998887664        4455     78999999999999999999999999988765544    3


Q ss_pred             cCCcHHHHHHhcCchhhhHhhh
Q 043593           77 IKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        77 ~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      .+.||+++|...++.++...+.
T Consensus       106 ~g~t~l~~a~~~~~~~~~~~l~  127 (277)
T d2fo1e1         106 SERSALHQAAANRDFGMMVYML  127 (277)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHT
T ss_pred             cccccccchhhhcchhhhhhhh
Confidence            4679999999999988887763

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.1e-15  Score=88.73  Aligned_cols=85  Identities=25%  Similarity=0.177  Sum_probs=72.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH----hcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            9 NSEDTALHIAVSDGRSDIVLKLVE----SMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         9 ~~g~t~lh~a~~~~~~~~~~~Ll~----~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      ++|+||||+||..|+.++++.|++    .+.     +++.+|..|.||||+|+..|+.+++++|+..++..    ..+.+
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~-----~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~   75 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR-----ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   75 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTC-----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCccCCCCCccceehhccccccccccccccccccccccccccc
Confidence            479999999999999999988875    455     78899999999999999999999999987765444    33458


Q ss_pred             HHHHHHhcCchhhhHhhh
Q 043593           81 LLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        81 pl~~A~~~~~~~~~~~~~   98 (103)
                      +++.|...++.++++.+.
T Consensus        76 ~~~~a~~~~~~~~~~~~~   93 (228)
T d1k1aa_          76 AAHLACEHRSPTCLRALL   93 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHH
T ss_pred             ccccccccccccchhhhh
Confidence            999999998888877664

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=4.9e-16  Score=87.71  Aligned_cols=66  Identities=21%  Similarity=0.256  Sum_probs=60.9

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhh
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDI   72 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~   72 (103)
                      |+.+.+|.+|+||||+|+..|+.+++++|++.|+     +++.+|..|.||||+|+..|+.+++++|....
T Consensus        72 adin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~ga-----d~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          72 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA-----SIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             SCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChhhhhhhhccccccccccccccccccccccCc-----cccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            4567899999999999999999999999999998     89999999999999999999999999887643

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=6.6e-16  Score=91.01  Aligned_cols=90  Identities=19%  Similarity=0.070  Sum_probs=69.0

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhh-hhcc----ccC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLD-IQSL----NIK   78 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~-~~~~----~~~   78 (103)
                      ....|.+|+||||+|+..|+.++++.|++.+..    +++.+|..|.||||+|+..|+.+++++|+.. ++..    ..|
T Consensus       131 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~----~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g  206 (229)
T d1ixva_         131 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS----AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG  206 (229)
T ss_dssp             SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCC----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTS
T ss_pred             ccccCCCCCCccchhhhcccccccccccccccc----cccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCC
Confidence            345678889999999999999999999888754    6788888899999999999999999887643 3332    455


Q ss_pred             CcHHHHHHhcCchhhhHhhhhh
Q 043593           79 IKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        79 ~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      .|||++|+.   .+++++|--|
T Consensus       207 ~t~l~~A~~---~~~~~~Ll~~  225 (229)
T d1ixva_         207 AKAEDVALN---EQVKKFFLNN  225 (229)
T ss_dssp             CCTGGGCSC---HHHHHHHHHH
T ss_pred             CCHHHHHhh---HHHHHHHHHc
Confidence            689998873   4677776433

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.60  E-value=6.8e-16  Score=93.81  Aligned_cols=78  Identities=22%  Similarity=0.339  Sum_probs=69.1

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      ...+..|.||||.|+..|+.++++.|++.|.     +++.++..|.||||+|+..|+.+++++|+..++..    ..|.|
T Consensus       193 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~-----din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~T  267 (291)
T d1s70b_         193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARY-----DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT  267 (291)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC-----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccccCCCCChhhHHHHcCChhhhccccccee-----cccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            4567889999999999999999999999997     89999999999999999999999999988765443    45679


Q ss_pred             HHHHHHh
Q 043593           81 LLDIQSL   87 (103)
Q Consensus        81 pl~~A~~   87 (103)
                      |||+|+.
T Consensus       268 aL~~A~e  274 (291)
T d1s70b_         268 AFDVADE  274 (291)
T ss_dssp             TTTSCCS
T ss_pred             HHHHHHH
Confidence            9999974

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.59  E-value=2e-15  Score=91.74  Aligned_cols=87  Identities=23%  Similarity=0.170  Sum_probs=75.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHH
Q 043593            8 TNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLD   83 (103)
Q Consensus         8 d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~   83 (103)
                      +.++.|+|+.||..|+.+++++|++.|.     +++..|..|.||||+|+..|+.+++++|+......    ..+.+||+
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Ga-----dvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~  111 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGA-----DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLH  111 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCC-----CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCC-----CCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccc
Confidence            3456799999999999999999999997     89999999999999999999999999987665433    33469999


Q ss_pred             HHHhcCchhhhHhhhh
Q 043593           84 IQSLNIKFKILDIQSL   99 (103)
Q Consensus        84 ~A~~~~~~~~~~~~~~   99 (103)
                      .++..++.++++.+-.
T Consensus       112 ~a~~~~~~~~~~~l~~  127 (291)
T d1s70b_         112 AAASCGYLDIAEYLIS  127 (291)
T ss_dssp             HHHHHTCHHHHHHHHH
T ss_pred             ccccccccchhhcccc
Confidence            9999999999988743

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.6e-14  Score=80.67  Aligned_cols=97  Identities=19%  Similarity=0.203  Sum_probs=60.2

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCc----------------------------hhhhcccccCCChHHH
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNA----------------------------SNVLKLQNEKGNTALH   54 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~----------------------------~~~~~~~~~~g~tpl~   54 (103)
                      +....|.+|.||||+|+ .++.+++++|++.+....                            ..+++..+..|.+|++
T Consensus        26 d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~  104 (156)
T d1ihba_          26 NVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH  104 (156)
T ss_dssp             CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccc
Confidence            44556666777776554 566666666666654100                            0023344455666777


Q ss_pred             HHHHcCCHHHHhhhhhhhh-----ccccCCcHHHHHHhcCchhhhHhhhhh
Q 043593           55 LAAALGNAAFVKIGCLDIQ-----SLNIKIKLLDIQSLNIKFKILDIQSLN  100 (103)
Q Consensus        55 ~a~~~~~~~~~~~l~~~~~-----~~~~~~tpl~~A~~~~~~~~~~~~~~~  100 (103)
                      +|+..++.+++++++....     ....|.||||+|+..++.+++++|-.+
T Consensus       105 ~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_         105 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            7777777777776554332     223456999999999999998888543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=3.7e-15  Score=83.08  Aligned_cols=61  Identities=21%  Similarity=0.197  Sum_probs=57.0

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhh
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIG   68 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l   68 (103)
                      +...+|.+|+||||+|+..|+.+++++|++.|+     +++..|..|.||||+|+..|+.+++++|
T Consensus        92 ~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga-----d~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          92 DVNAKDMLKMTALHWATEHNHQEVVELLIKYGA-----DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccCchHHHhhhhcchhheeeecccccc-----CCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            456789999999999999999999999999998     8999999999999999999999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=3.6e-15  Score=86.72  Aligned_cols=61  Identities=11%  Similarity=0.203  Sum_probs=56.9

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhh
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIG   68 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l   68 (103)
                      .....|..|.||||+|+..|+.+++++|++.|+     +++.+|..|.||||+|++.|+.+++++|
T Consensus       148 ~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga-----d~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         148 NRDAQDDKDETPLFLAAREGSYEASKALLDNFA-----NREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccccchhccccHHHHHHHHHHCCC-----CCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            356679999999999999999999999999998     8999999999999999999999999875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.1e-15  Score=82.52  Aligned_cols=91  Identities=15%  Similarity=0.166  Sum_probs=77.6

Q ss_pred             cccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc----ccc
Q 043593            2 IQAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS----LNI   77 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~----~~~   77 (103)
                      ++....|..|+||||+|+ .++.++++.|++.+.     +++..+..|.+|++.++..++.++++++......    ...
T Consensus        27 ~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~  100 (156)
T d1bd8a_          27 VHPDALNRFGKTALQVMM-FGSTAIALELLKQGA-----SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT  100 (156)
T ss_dssp             CCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             CCCCccCCCCCccccccc-ccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccCC
Confidence            345678999999999886 588999999999987     7888899999999999999999999987654432    245


Q ss_pred             CCcHHHHHHhcCchhhhHhhh
Q 043593           78 KIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        78 ~~tpl~~A~~~~~~~~~~~~~   98 (103)
                      +.||||+|+..|+.+++++|.
T Consensus       101 ~~t~L~~A~~~~~~~i~~~L~  121 (156)
T d1bd8a_         101 GALPIHLAVQEGHTAVVSFLA  121 (156)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCeeecccccccccccccccc
Confidence            679999999999999999884

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1e-14  Score=85.87  Aligned_cols=88  Identities=24%  Similarity=0.139  Sum_probs=70.6

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhccc-ccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCC
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQ-NEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKI   79 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~   79 (103)
                      .....+|.||||.|+..++.+.+..|+..+.     ..+.. +..|.||||+|+..|+.+++++|+..++..    ..|.
T Consensus       105 ~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~-----~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~  179 (221)
T d1iknd_         105 KATNYNGHTCLHLASIHGYLGIVELLVSLGA-----DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY  179 (221)
T ss_dssp             GCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC-----CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCC
T ss_pred             cccccccchhhhHHhhcCChhheeeecccCc-----ccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCC
Confidence            3455678899999999999999998888887     45544 467899999999999999999987655443    4457


Q ss_pred             cHHHHHHhcCchhhhHhh
Q 043593           80 KLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        80 tpl~~A~~~~~~~~~~~~   97 (103)
                      |||++|+..++.++++.+
T Consensus       180 tpl~~A~~~~~~~~~~~l  197 (221)
T d1iknd_         180 SPYQLTWGRPSTRIQQQL  197 (221)
T ss_dssp             CGGGGCTTSSCHHHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHH
Confidence            999999999999998877

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.2e-15  Score=86.78  Aligned_cols=90  Identities=24%  Similarity=0.227  Sum_probs=69.9

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhc--------
Q 043593            3 QAAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQS--------   74 (103)
Q Consensus         3 ~~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~--------   74 (103)
                      ..+..|.+|.||||+|+..|+.+++++|++.|.     +++..|..|.+||++++..+..++++.+......        
T Consensus        31 ~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~-----d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  105 (221)
T d1iknd_          31 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC-----DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK  105 (221)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCC-----CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGG
T ss_pred             CcccCCCCCCccccccccccccccccccccccc-----cccccccccccccccccccccccccchhhhhccccccccccc
Confidence            456789999999999999999999999999987     7889999999999999999999988865432111        


Q ss_pred             --cccCCcHHHHHHhcCchhhhHhh
Q 043593           75 --LNIKIKLLDIQSLNIKFKILDIQ   97 (103)
Q Consensus        75 --~~~~~tpl~~A~~~~~~~~~~~~   97 (103)
                        ...+.||++.|+..++.+++..+
T Consensus       106 ~~~~~~~t~l~~a~~~~~~~~~~~l  130 (221)
T d1iknd_         106 ATNYNGHTCLHLASIHGYLGIVELL  130 (221)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccchhhhHHhhcCChhheeee
Confidence              11234677777777766666655

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.7e-14  Score=87.11  Aligned_cols=92  Identities=17%  Similarity=0.057  Sum_probs=73.4

Q ss_pred             cccccCCCCCCcHHHHHHHcC----CHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhh-hh---
Q 043593            2 IQAAKITNSEDTALHIAVSDG----RSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLD-IQ---   73 (103)
Q Consensus         2 a~~~~~d~~g~t~lh~a~~~~----~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~-~~---   73 (103)
                      ++....|..|.++++.+...+    ...++++|++.|.     +++.++..|.||||+++..|+.+++++++.. +.   
T Consensus       173 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga-----~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din  247 (285)
T d1wdya_         173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA-----DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN  247 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC-----CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT
T ss_pred             CCcccccCCCCcccccccccccchHHHHHHHHHHHCCC-----CCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCc
Confidence            456778888888887765543    3468889999987     7888899999999999999999999987642 32   


Q ss_pred             -ccccCCcHHHHHHhcCchhhhHhhh
Q 043593           74 -SLNIKIKLLDIQSLNIKFKILDIQS   98 (103)
Q Consensus        74 -~~~~~~tpl~~A~~~~~~~~~~~~~   98 (103)
                       ....|.||||+|+..|+.+++++|-
T Consensus       248 ~~d~~G~TpL~~A~~~~~~eiv~~Ll  273 (285)
T d1wdya_         248 DTDSDGKTALLLAVELKLKKIAELLC  273 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence             2246679999999999999999883

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=3e-14  Score=83.79  Aligned_cols=82  Identities=13%  Similarity=0.160  Sum_probs=64.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc-------ccCCcHHHH
Q 043593           12 DTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL-------NIKIKLLDI   84 (103)
Q Consensus        12 ~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~-------~~~~tpl~~   84 (103)
                      +||||+||..|+.+.++.|+...+.    +++.+|..|.||||+|+..|+.+++++++..++..       ..+.+|+++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~----~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~   76 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPS----LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI   76 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGG----GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCC----cccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccc
Confidence            4799999999999999888886543    78888899999999999999999999887654332       234588999


Q ss_pred             HHhcCchhhhHhh
Q 043593           85 QSLNIKFKILDIQ   97 (103)
Q Consensus        85 A~~~~~~~~~~~~   97 (103)
                      +...+..+++..+
T Consensus        77 ~~~~~~~~~~~~~   89 (229)
T d1ixva_          77 ACSVGNLEVVKSL   89 (229)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             ccccccccccccc
Confidence            8888887777654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.4e-14  Score=78.86  Aligned_cols=79  Identities=19%  Similarity=0.156  Sum_probs=62.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCcHHHHHHhc
Q 043593           13 TALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIKLLDIQSLN   88 (103)
Q Consensus        13 t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~tpl~~A~~~   88 (103)
                      ++||+||..|+.+++++|++.|.     +++.+|..|.||||+|+ .++.+++++++...+..    ..+.+|++.+...
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~-----d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~   76 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNV-----NVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCC-----CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC-----CcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccc
Confidence            79999999999999999999998     89999999999999885 68999999876544332    2234666666666


Q ss_pred             CchhhhHhh
Q 043593           89 IKFKILDIQ   97 (103)
Q Consensus        89 ~~~~~~~~~   97 (103)
                      ++......+
T Consensus        77 ~~~~~~~~l   85 (156)
T d1ihba_          77 GFLDTLQTL   85 (156)
T ss_dssp             TCHHHHHHH
T ss_pred             ccccccccc
Confidence            665555554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1e-14  Score=84.51  Aligned_cols=86  Identities=21%  Similarity=0.106  Sum_probs=74.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhcc----ccCCc
Q 043593            5 AKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSL----NIKIK   80 (103)
Q Consensus         5 ~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~----~~~~t   80 (103)
                      ...+..+.++++.|+..+...+.+.++..+.     ..+.+|..|.||||+|+..|+.+++++|++.++..    ..|.|
T Consensus       138 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~T  212 (228)
T d1k1aa_         138 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGA-----NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDT  212 (228)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccccchhhHHHHHHHhhhhhhhhhhhhhcc-----ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence            3456788999999999999999999999987     78889999999999999999999999988765443    45679


Q ss_pred             HHHHHHhcCchhhhH
Q 043593           81 LLDIQSLNIKFKILD   95 (103)
Q Consensus        81 pl~~A~~~~~~~~~~   95 (103)
                      |||+|+..|+.++++
T Consensus       213 pL~~A~~~~~~divk  227 (228)
T d1k1aa_         213 PLMVARSRRVIDILR  227 (228)
T ss_dssp             TTTTCSSHHHHHHHT
T ss_pred             HHHHHHhCCCccccC
Confidence            999999998887764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.1e-13  Score=80.89  Aligned_cols=71  Identities=23%  Similarity=0.211  Sum_probs=46.4

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHHHcCCHHHHhhhhhhhhccccC
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAAALGNAAFVKIGCLDIQSLNIK   78 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~l~~~~~~~~~~   78 (103)
                      ....|..|.||||.|+..|+.+++++|++..+.    +++.+|..|.||||+|+..|+.+++++|++.++..+.+
T Consensus       212 ~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~----din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI----EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             CCccCCCCCCccchhhhcCcHHHHHHHHHcCCC----CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            345566677777777777777777777664333    56666667777777777777777777766666655544

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=1.8e-12  Score=79.49  Aligned_cols=49  Identities=24%  Similarity=0.237  Sum_probs=40.3

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHHhcCcCchhhhcccccCCChHHHHHH
Q 043593            4 AAKITNSEDTALHIAVSDGRSDIVLKLVESMGQNASNVLKLQNEKGNTALHLAA   57 (103)
Q Consensus         4 ~~~~d~~g~t~lh~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~g~tpl~~a~   57 (103)
                      .+.+|.+|+||||+|+..|+.+++++|++.|+     +++.+|..|.|||++|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GA-----d~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGA-----DPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC-----CTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-----CCCCCCCCCCCHHHHcC
Confidence            35678888888888888888888888888887     78888888888888764