Citrus Sinensis ID: 043612

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLNLSNYNVASIHFPPPPTIIPSSSTSSSSLDWSLPHHLQPQVHLDPNPLENQIFSHIEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMVPTMPKLCEILEGTVCNLPSSSASLEGVDPIAKLSCGTTFSSGSYPYHVPADPMEYTDAI
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHcccccccccHHHHHHHHHHHHHcccccHHHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccEEcccccccccccccccHHHHHccccccccccccccccccccEEcccccccccccccEEEcccHHHHHHcc
Coil and Loop (DISEMBL)
mghhsccnkqkvkrglwspeedeKLINYVTTyghgcwssvpkhaglqrcgksCRLRWINylrpdlkrgsfspQEAALIIELHSILGNRWAQIArhlpgrtdnekkLMSHEIvpalasfpadfhnslcpeevgffslntnpnlilnshqqdhqfhlpspppmfhnnfdqaEFKLNlsnynvasihfpppptiipssstssssldwslphhlqpqvhldpnplenqifshiepvapphyyddiigdhdnklnttdpsivtmpydqnplmvptmPKLCEILegtvcnlpsssaslegvdpiaklscgttfssgsypyhvpadpmeytdai
Flexible Loop (DISEMBL)
mghhsccnkqkvkrglwspeeDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLNLSNYNVASIHFPPPPTIIPSSSTSSSSLDWSLPHHLQPQVHLDPNPLENQIFSHIEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMVPTMPKLCEILEGTVCNLPSSSASLEGVDPIAKLSCGTtfssgsypyhvpadPMEYTDAI
Low Complexity Region (SEG)
MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLNLSNYNVASIHFpppptiipssstssssLDWSLPHHLQPQVHLDPNPLENQIFSHIEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMVPTMPKLCEILEGTVCNLPSSSASLEGVDPIAKLSCGTTFSSGSYPYHVPADPMEYTDAI
Disordered region (IsUnstruct)
**************GLWS**EDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRT****KLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLIL**************************FKLNLSNYNVASIH**************************************NQIFSHIEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMVPTMPKLCEILEGTVCNLPS****LEGVDPIAKLSCGTTFSS**Y***************
Disordered Region (DISOPRED)
*GHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVP***********************************************************************************************************************AP*HYYDDIIGDH******************************EIL******************************S**YPYHVPADPMEYTDAI
Disordered Region (DISEMBL)
MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLNLSNYNVASIHFPPPPTII************SLPHHLQPQVHLDPNPLENQIFSHIEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMVPTMPKLCEILEGTVCNLPSSSASLEGVDPIAKLSCGTTFSSGSYPYHVPADPMEYTDAI
Disordered Region (DISPRO)
***HSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASFP*********************************************************************************************QVHLDPNPLENQIFSHIEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMVPTMPKLCEILEGTVCNLPSSSASLEGVDPIAKLSCGTTFSSGSYPYHVPADPMEYTDAI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLNLSNYNVASIHFPPPPTIIPSSSTSSSSLDWSLPHHLQPQVHLDPNPLENQIFSHIEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMVPTMPKLCEILEGTVCNLPSSSASLEGVDPIAKLSCGTTFSSGSYPYHVPADPMEYTDAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
Q8LPH6	352	Transcription factor MYB8	no	no	0.321	0.298	0.8	1e-48
Q9LXV2	280	Transcription factor MYB4	no	no	0.293	0.342	0.760	3e-40
O49608	274	Transcription factor MYB3	no	no	0.348	0.416	0.580	6e-38
Q38851	236	Transcription repressor M	no	no	0.345	0.478	0.569	1e-37
P20027	302	Myb-related protein Hv33	N/A	no	0.318	0.344	0.666	1e-37
Q9SZP1	282	Transcription repressor M	no	no	0.321	0.372	0.638	2e-37
P81395	274	Myb-related protein 330 O	N/A	no	0.345	0.412	0.577	4e-37
O22264	371	Transcription factor MYB1	no	no	0.321	0.283	0.638	5e-37
Q50EX6	294	Protein ODORANT1 OS=Petun	N/A	no	0.321	0.357	0.647	5e-37
P81393	232	Myb-related protein 308 O	N/A	no	0.348	0.491	0.564	6e-37

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 84/105 (80%), Positives = 94/105 (89%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MG HSCC KQK+++GLWSPEEDEKL+NY+T +GHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           LRPDLKRG+FS  E +LIIELH+ LGNRW+QIA  LPGRTDNE K
Sbjct: 61  LRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIK 105

Probable transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXV2|MYB46_ARATH Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1

 Score =  166 bits (419), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 73/96 (76%), Positives = 82/96 (85%)

Query: 10  QKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGS 69
           +K+K+GLWSPEED KL+ Y+ + G GCWS V K+AGLQRCGKSCRLRWINYLRPDLKRG+
Sbjct: 16  KKMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGA 75

Query: 70  FSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           FSPQE  LII  HSILGNRW+QIA  LPGRTDNE K
Sbjct: 76  FSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIK 111

Transcription activator. Involved in the regulation of secondary wall biosynthesis in fibers and vessels.

Arabidopsis thaliana (taxid: 3702)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score =  158 bits (399), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 72/124 (58%), Positives = 89/124 (71%), Gaps = 10/124 (8%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MG   CC K    +G W+ EED+KLI+Y+  +G GCW S+P+ AGLQRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHE 110
           LRPDLKRG+F+ +E  LII+LHS+LGN+W+ IA  LPGRTDNE          +KL+   
Sbjct: 61  LRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKG 120

Query: 111 IVPA 114
           I PA
Sbjct: 121 IDPA 124

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/123 (56%), Positives = 88/123 (71%), Gaps = 10/123 (8%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MG   CC K    +G W+ EED++L++Y+  +G GCW S+PK AGL RCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHE 110
           LRPDLKRG+F+  E  +II+LHS+LGN+W+ IA  LPGRTDNE          +KL+SH 
Sbjct: 61  LRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHG 120

Query: 111 IVP 113
           I P
Sbjct: 121 IDP 123

Arabidopsis thaliana (taxid: 3702)

>sp|P20027|MYB3_HORVU Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 84/114 (73%), Gaps = 10/114 (8%)

Query: 11  KVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSF 70
           KV++GLWSPEEDEKL N++  +G GCWSSVP+ A L RCGKSCRLRWINYLRPDLKRG F
Sbjct: 13  KVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCF 72

Query: 71  SPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHEIVPA 114
           S QE   I+ LH ILGNRW+QIA HLPGRTDNE          KKL    I PA
Sbjct: 73  SQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQGIDPA 126

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  156 bits (394), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 81/105 (77%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MG   CC K    +G W+ EEDE+L+ Y+  +G GCW S+PK AGL RCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           LRPDLKRG+F+ +E  LII+LHS+LGN+W+ IA  LPGRTDNE K
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIK 105

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1

 Score =  155 bits (391), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 88/123 (71%), Gaps = 10/123 (8%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MG   CC K    +G W+ EED++LINY+  +G GCW S+PK AGL RCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHE 110
           LRPDLKRG+F+ +E  +II+LHS+LGN+W+ IA  LPGRTDNE          +KL+S  
Sbjct: 61  LRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRG 120

Query: 111 IVP 113
           I P
Sbjct: 121 IDP 123

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|O22264|MYB12_ARATH Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1

 Score =  155 bits (391), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 82/105 (78%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MG   CC K  +KRG W+ EED+ L NY+ + G G W S+PK+AGL+RCGKSCRLRWINY
Sbjct: 1   MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           LR DLKRG+ +P+E  L+++LHS LGNRW+ IA HLPGRTDNE K
Sbjct: 61  LRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIK 105

Transcription factor that activates the expression of CHS, CHI, F3H and FLS1. Flavonol-specific activator of flavonoid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q50EX6|ODO1_PETHY Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1

 Score =  155 bits (391), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 81/105 (77%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MG   CC+K  VK+G W+ EED+KLI+++ T G  CW +VPK AGL+RCGKSCRLRW NY
Sbjct: 1   MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           LRPDLKRG  S  E  L+I+LHS LGNRW++IA  LPGRTDNE K
Sbjct: 61  LRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIK 105

R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development.

Petunia hybrida (taxid: 4102)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  154 bits (390), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 87/124 (70%), Gaps = 10/124 (8%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MG   CC K    +G W+ EED++L+ Y+  +G GCW S+PK AGL RCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHE 110
           LRPDLKRG+F+ +E  LII+LHS+LGN+W+ IA  LPGRTDNE          +KL+S  
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRG 120

Query: 111 IVPA 114
           I P 
Sbjct: 121 IDPT 124

Transcription factor.

Antirrhinum majus (taxid: 4151)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
224128570	367	predicted protein [Populus trichocarpa]	0.954	0.850	0.586	4e-90
356522184	372	PREDICTED: transcription factor MYB21-li	0.914	0.803	0.508	9e-78
225442204	309	PREDICTED: transcription factor MYB21 [V	0.880	0.932	0.517	4e-76
46402547	352	MYB9 [Gossypium hirsutum]	0.908	0.843	0.531	9e-76
46402545	352	MYB7 [Gossypium hirsutum]	0.908	0.843	0.528	2e-75
147846156	309	hypothetical protein VITISV_000216 [Viti	0.889	0.941	0.533	2e-74
297743039	322	unnamed protein product [Vitis vinifera]	0.840	0.854	0.522	7e-74
356547334	353	PREDICTED: uncharacterized protein LOC10	0.923	0.855	0.487	1e-70
449446919	355	PREDICTED: uncharacterized protein LOC10	0.859	0.791	0.507	2e-67
357454585	401	R2R3-MYB transcription factor [Medicago	0.639	0.521	0.619	3e-65

>gi|224128570|ref|XP_002329036.1| predicted protein [Populus trichocarpa] gi|222839707|gb|EEE78030.1| predicted protein [Populus trichocarpa]

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 203/346 (58%), Positives = 230/346 (66%), Gaps = 34/346 (9%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MGHHSCCNKQKVKRGLWSPEEDEKL NY++TYGHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct: 1   MGHHSCCNKQKVKRGLWSPEEDEKLANYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHE 110
           LRPDLKRGSFSPQEAALIIELHSILGNRWAQIA+HLPGRTDNE          KKL+SH+
Sbjct: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLISHD 120

Query: 111 IVPALASFPADF--HNSLCPEEVGFFSLNTNPNLILNSHQQD-HQFHLPSPPPMFHNNFD 167
            VPALA+F  D+  HNS  PEE  F SLN NPNLI+ +H  D HQ +LPSP  +   +F 
Sbjct: 121 QVPALAAF-TDYIVHNSSVPEE-AFLSLNANPNLIMTAHHHDHHQLYLPSPTSILQ-SFG 177

Query: 168 QAEFKLNL-SNYNVASIHF-PPPPTIIPSSSTSSSSLD--WSLPHHLQPQVHLDPNPLEN 223
             +FKLN  +NYNV   H  P  P I P  + +SSS D  WSLP+  Q   HLD N  E+
Sbjct: 178 HGDFKLNQPNNYNVDLPHLSPATPLIPPPLNDNSSSFDPGWSLPYLPQ---HLDQNQ-ED 233

Query: 224 QIFSHIEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMVPTMPKLCEILEGTVC 283
              S      P HY  + +  HD           TM YD   +MV  MPKL EI+EG VC
Sbjct: 234 HHQSLSNGAIPVHYIGEKVVTHDQSTIN-----ATMSYDNQSMMVSMMPKLFEIIEGNVC 288

Query: 284 NLPSSSASLEGV-DPIAKLSCGTTFSSGSYPYH-VPADPMEYTDAI 327
            +P SS S   V DP+A+LS   +  SG YP H V    +E  DAI
Sbjct: 289 RMPPSSESQNTVHDPLARLS---SLPSGPYPVHEVATSQLESIDAI 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522184|ref|XP_003529727.1| PREDICTED: transcription factor MYB21-like [Glycine max]

 Score =  296 bits (758), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 178/350 (50%), Positives = 219/350 (62%), Gaps = 51/350 (14%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MGHHSCCNKQKVKRGLWSPEEDEKLINY+TTYGHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct: 21  MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINY 80

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHE 110
           LRPDLKRGSFSP+EAALIIELHSILGNRWAQIA+HLPGRTDNE          KKL+SH+
Sbjct: 81  LRPDLKRGSFSPEEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHD 140

Query: 111 IVPALASFPADFHNSLCPEEVG----FFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNF 166
           ++P+LA+F +DFH+   P  +G     F    NPN+ILN H    Q +LP+ P      F
Sbjct: 141 VIPSLATF-SDFHS---PGNIGSMESLFPFTANPNVILNFHHHTDQLYLPTTPSSIPQGF 196

Query: 167 DQA--EFKLNLSNYNVASI----HFPPPPTIIPSSSTSSSSLD-WSLPHHLQPQVHLDPN 219
           D    + KL+++NYN  +     + P P  ++PSS+  SS  D WSL       +HL+PN
Sbjct: 197 DHINNDVKLDINNYNANNFLHIQNIPTPEIVLPSSNDPSSYNDTWSLD---CVALHLNPN 253

Query: 220 PLENQIFSHIEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMVPTMPKLCEILE 279
             ENQI    +     HY  D   +           +V   Y + PL+ P +PK+ + +E
Sbjct: 254 Q-ENQITKSDDTTL--HYVVDKFIN----------PMVLQQY-EGPLVEPIVPKVSKSIE 299

Query: 280 GTVCNLPSSSASLEGVDPIAKLSCGTTFSSGSYP--YHVPADPMEYTDAI 327
             VC++P SS S E  +        TT     YP    V A+ +EY +A 
Sbjct: 300 DYVCSIPYSSTSQEQHE-------ATTTKFQCYPEDLTVAANQLEYVEAF 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442204|ref|XP_002274626.1| PREDICTED: transcription factor MYB21 [Vitis vinifera]

 Score =  291 bits (744), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 177/342 (51%), Positives = 211/342 (61%), Gaps = 54/342 (15%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MGHHSCCNKQKVKRGLWSPEEDEKLINY+++YGHGCWSSVP+ AGLQRCGKSCRLRWINY
Sbjct: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYISSYGHGCWSSVPRLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHE 110
           LRPDLKRGSFSPQEAALIIELH ILGNRWAQIA+HLPGRTDNE          KKL+SH 
Sbjct: 61  LRPDLKRGSFSPQEAALIIELHRILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLVSHG 120

Query: 111 IVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFDQAE 170
            VP LA+FP   + +  PE   FFSLN NPNLI +   QDHQ +LPSP  M  + FD   
Sbjct: 121 -VPDLATFPDIPNPNASPE--AFFSLNGNPNLIPSP--QDHQLYLPSPTSMLQSGFD--- 172

Query: 171 FKLNLSNYNVASIHFPPPPTIIPSSSTSSSSLDWSLPHHLQPQVHLDPNPLENQ---IFS 227
               L+NYN+  +HF              SS D + P    P ++ +   L N+   I+ 
Sbjct: 173 ----LANYNLEFVHF---QPPPAPPLPDPSSYDPTWPWGCHPHLNQEDYVLGNEVGPIYI 225

Query: 228 HIEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMVPTMPKLCEILEGTVCNLPS 287
             +P+ P                       ++P   +P M P MPKL E + G    LPS
Sbjct: 226 ETKPINP---------------------NFSLPSFNSPSMAPMMPKLSETISGNDRILPS 264

Query: 288 SSASLEGVDPIAKLSCGTTFSSGSYPY--HVPADPMEYTDAI 327
           SS   E VDP+A+L    +  SGS+P+  HVP    +Y +AI
Sbjct: 265 SSFPHEVVDPVARL---PSLPSGSHPHAPHVPISHFDYIEAI 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46402547|gb|AAS92347.1| MYB9 [Gossypium hirsutum]

 Score =  290 bits (741), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 185/348 (53%), Positives = 215/348 (61%), Gaps = 51/348 (14%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MGHHSCCNKQKVKRGLWSPEEDEKLINY+TTYGHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHE 110
           LRPDLKRGSFSPQEAALIIELHSILGNRWAQIA+HLPGRTDNE          KKL+SH+
Sbjct: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLISHD 120

Query: 111 IVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPM--FHNNFDQ 168
            VPALASF AD H+S   EE GF SLN NPNLIL + QQD  +  P+ P +  F ++ D 
Sbjct: 121 HVPALASF-ADVHSSNHTEEAGFISLNANPNLILTA-QQDQLYLSPTAPVLQSFGHHADL 178

Query: 169 AEFKLNLSNYNVASIHFPPPPTIIPSSSTSSSSLDWSLPHHLQPQVHLDPNPLENQIFSH 228
                 L+                  S+T+S    W+LP                  F  
Sbjct: 179 VHHHFPLTPMLPPPPP---------PSNTASFDPAWTLP------------------FGP 211

Query: 229 IEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMV-PTMPKLCEILEGT-VCNLP 286
                   ++   + +++   N     ++  P+D NPLM  PT+PKLCEILEG  VCN+P
Sbjct: 212 QHDQDDDQHHQVQVFNNEAAQNFVSDKLMNPPFD-NPLMGPPTVPKLCEILEGNMVCNIP 270

Query: 287 -SSSASLE-GVDPIAKL--SCGTTFSSGSYPYH---VPADPMEYTDAI 327
            +SS SLE  +DP+     SC     +GS   H   V A  MEY D I
Sbjct: 271 QTSSVSLETNIDPLVSRLSSCFPPIPAGSNYAHDMQVGASQMEYIDNI 318

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46402545|gb|AAS92346.1| MYB7 [Gossypium hirsutum]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 184/348 (52%), Positives = 214/348 (61%), Gaps = 51/348 (14%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MGHHSCCNKQKVKRGLWSPEEDEKLINY+TTYGHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHE 110
           LRPDLKRGSFSPQEAALIIELHSILGNRWAQIA+HLPGRTDNE          KKL+SH+
Sbjct: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLISHD 120

Query: 111 IVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPM--FHNNFDQ 168
            VPALASF AD H+S   EE GF SLN NPNLIL + QQD  +  P+ P +  F ++ D 
Sbjct: 121 HVPALASF-ADVHSSNHTEEAGFISLNANPNLIL-AAQQDQLYLSPTAPVLQSFGHHADL 178

Query: 169 AEFKLNLSNYNVASIHFPPPPTIIPSSSTSSSSLDWSLPHHLQPQVHLDPNPLENQIFSH 228
                 L+                  S+T+S    W+LP                  F  
Sbjct: 179 VHHHFPLTPMLPPPPP---------PSNTASFDPAWTLP------------------FGP 211

Query: 229 IEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMV-PTMPKLCEILEGT-VCNLP 286
                   ++   + +++   N     ++  P+D NPLM  PT+PKLCEILEG  VCN+P
Sbjct: 212 QHDQDDDQHHQVQVFNNEAAQNFVSDKLMNPPFD-NPLMGPPTVPKLCEILEGNMVCNIP 270

Query: 287 SS-SASLE-GVDPIAKL--SCGTTFSSGSYPYH---VPADPMEYTDAI 327
            + S SLE  +DP+     SC     +GS   H   V A  MEY D I
Sbjct: 271 QTPSVSLENNIDPLVSRLSSCFPPIPAGSNYAHDMQVGASQMEYIDTI 318

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846156|emb|CAN81631.1| hypothetical protein VITISV_000216 [Vitis vinifera]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 181/339 (53%), Positives = 214/339 (63%), Gaps = 48/339 (14%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MGHHSCCNKQKVKRGLWSPEEDEKLINY+++YGHGCWSSVP+ AGLQRCGKSCRLRWINY
Sbjct: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYISSYGHGCWSSVPRLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHE 110
           LRPDLKRGSFSPQEAALIIELH ILGNRWAQIA+HLPGRTDNE          KKL+SH 
Sbjct: 61  LRPDLKRGSFSPQEAALIIELHRILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLVSHG 120

Query: 111 IVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFDQAE 170
            VP LA+FP   + +  PE   FFSLN NPNLI +   QDHQ +LPSP  M  + FD   
Sbjct: 121 -VPDLATFPDIPNPNASPE--AFFSLNGNPNLIPSP--QDHQLYLPSPTSMLQSGFD--- 172

Query: 171 FKLNLSNYNVASIHFPPPPTIIPSSSTSSSSLDWSLPHHLQPQVHLDPNPLENQIFSHIE 230
               L+NYN+   HF PPP    S  +S     W L  H  P ++ +   L N++  H  
Sbjct: 173 ----LANYNLEFAHFQPPPAPPLSDPSSYDP-TWLLGCH--PHLNQEDYVLGNEVGPHFI 225

Query: 231 PVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMVPTMPKLCEILEGTVCNLPSSSA 290
              P                  +P+  ++P   +P M P MPKL E + G    LPSSS 
Sbjct: 226 ETKP-----------------INPNF-SLPSFNSPSMAPMMPKLSETISGNDRILPSSSF 267

Query: 291 SLEGVDPIAKLSCGTTFSSGSYPY--HVPADPMEYTDAI 327
             E VDP+A+L    +  SGS+P+  HVP    +Y +AI
Sbjct: 268 PHEVVDPVARL---PSLPSGSHPHAPHVPISHFDYIEAI 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743039|emb|CBI35906.3| unnamed protein product [Vitis vinifera]

 Score =  283 bits (724), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 171/327 (52%), Positives = 202/327 (61%), Gaps = 52/327 (15%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MGHHSCCNKQKVKRGLWSPEEDEKLINY+++YGHGCWSSVP+ AGLQRCGKSCRLRWINY
Sbjct: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYISSYGHGCWSSVPRLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHE 110
           LRPDLKRGSFSPQEAALIIELH ILGNRWAQIA+HLPGRTDNE          KKL+SH 
Sbjct: 61  LRPDLKRGSFSPQEAALIIELHRILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLVSHG 120

Query: 111 IVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFDQAE 170
            VP LA+FP   + +  PE   FFSLN NPNLI     QDHQ +LPSP  M  + FD   
Sbjct: 121 -VPDLATFPDIPNPNASPE--AFFSLNGNPNLI--PSPQDHQLYLPSPTSMLQSGFD--- 172

Query: 171 FKLNLSNYNVASIHFPPPPTIIPSSSTSSSSLDWSLPHHLQPQVHLDPNPLENQ---IFS 227
               L+NYN+  +HF              SS D + P    P ++ +   L N+   I+ 
Sbjct: 173 ----LANYNLEFVHF---QPPPAPPLPDPSSYDPTWPWGCHPHLNQEDYVLGNEVGPIYI 225

Query: 228 HIEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMVPTMPKLCEILEGTVCNLPS 287
             +P+ P                       ++P   +P M P MPKL E + G    LPS
Sbjct: 226 ETKPINPN---------------------FSLPSFNSPSMAPMMPKLSETISGNDRILPS 264

Query: 288 SSASLEGVDPIAKLSCGTTFSSGSYPY 314
           SS   E VDP+A+L    +  SGS+P+
Sbjct: 265 SSFPHEVVDPVARL---PSLPSGSHPH 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547334|ref|XP_003542069.1| PREDICTED: uncharacterized protein LOC100815963 [Glycine max]

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 173/355 (48%), Positives = 206/355 (58%), Gaps = 53/355 (14%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MGHHSCCNKQKVKRGLWSPEEDEKLINY+TTYGHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHE 110
           LRPDLKRGSF+PQEAALIIELHSILGNRWAQIA+HLPGRTDNE          KKL+SH+
Sbjct: 61  LRPDLKRGSFTPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHD 120

Query: 111 IVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLP-SPPPMF------- 162
           +VP+LA+F    H         FF L  NP  ILNSH    Q  LP  P P+        
Sbjct: 121 VVPSLATFSDHIHGPPNGSMESFFPLTDNP--ILNSHHHLDQLFLPIIPSPILQAFDHHH 178

Query: 163 HNNFDQAEFKLNLSNYNVASIHF--PPPPTIIPSSSTSSSSL----DWS----LPHHLQP 212
           HNN  + +     +N      +F  P P T+ P S+T+  SL     WS    +P     
Sbjct: 179 HNNDIKIDINKFFNNNANFLQYFQNPMPETVPPISNTTIPSLYEEDAWSSLGCVP----- 233

Query: 213 QVHLDPNPLENQIFSHIEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMVPTMP 272
            +HL+PN  ENQI         PH   +            +PS          +  P +P
Sbjct: 234 -IHLNPNQ-ENQIMITKSDHTTPHLIVE---------KFINPSTWQQQQHSVEVEPPILP 282

Query: 273 KLCEILEGTVCNLPSSSASLEGVDPIAKLSCGTTFSSGSYPYHVPADPMEYTDAI 327
           K+CE +E  VC++P SS+       +  ++C T       P   P D +EY DA+
Sbjct: 283 KVCESIEDYVCSIPYSSSVNSQDQHVEAVACFT-------PVICPQDQVEYIDAL 330

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446919|ref|XP_004141218.1| PREDICTED: uncharacterized protein LOC101204457 [Cucumis sativus]

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 169/333 (50%), Positives = 200/333 (60%), Gaps = 52/333 (15%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MGHHSCCNKQKVKRGLWSPEEDEKL+NY++TYGHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct: 1   MGHHSCCNKQKVKRGLWSPEEDEKLVNYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHE 110
           LRPDLKRGSFSPQEA+LI++LHSILGNRWAQIA+ LPGRTDNE          KKL+SHE
Sbjct: 61  LRPDLKRGSFSPQEASLIVQLHSILGNRWAQIAKQLPGRTDNEVKNFWNSNIKKKLISHE 120

Query: 111 IVPALASFPADFHN-SLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFDQ- 168
            V ALA+F     N +      GF  LN NPNLIL +     Q  LP+       +FD  
Sbjct: 121 -VSALATFSGHLQNPNASINNEGFIILNANPNLILTTSAHQDQPCLPT--STLQTSFDHL 177

Query: 169 AEFKLN-LSNYNVASIHFPPPPTIIPSSSTSSSSLD----W--SLPHHLQPQVHLDPNPL 221
            ++KL+  +N N  +      P+I  SSST+ S  D    W  S  + LQP   LD +  
Sbjct: 178 IDYKLDQFTNLNPNANLVHLLPSI--SSSTNFSPHDPRPMWPSSGGYRLQP---LDSDQP 232

Query: 222 ENQIFSHIEPVAPPHYYDDIIGDHDNKLNTTDPSIVTMPYDQNPLMVPTMPKLCEILEGT 281
                  + P A    Y DI   H                        TMPKLCE+ E  
Sbjct: 233 VVASGEFVTPAATLPQYVDISFLHPTT---------------------TMPKLCEVGEEN 271

Query: 282 VC-NLPSSSASLEGVDPIAKLSCGTTFSSGSYP 313
           +C ++P   A L+ +DPI KLS   +FS+G YP
Sbjct: 272 ICSSIPQIPAPLQDLDPIIKLS---SFSNGYYP 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454585|ref|XP_003597573.1| R2R3-MYB transcription factor [Medicago truncatula] gi|355486621|gb|AES67824.1| R2R3-MYB transcription factor [Medicago truncatula]

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 148/239 (61%), Positives = 170/239 (71%), Gaps = 30/239 (12%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MGHHSCCNKQKVKRGLWSPEEDEKLINY+T YGHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHE 110
           LRPDLKRGSFSPQEAALIIELH+ILGNRWAQIA+HLPGRTDNE          KKL+SH+
Sbjct: 61  LRPDLKRGSFSPQEAALIIELHTILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHD 120

Query: 111 IVP-ALASFPADFHNSLCPEE---VGFFSLNTNPNLILNSHQQ---DHQFHLP--SPPPM 161
            VP +LA+F +D H   CP       FF L  N N ILNS+ Q   D+  +LP   P P+
Sbjct: 121 FVPTSLATF-SDIH---CPRNGSVESFFPL-FNDNPILNSNHQYHFDNHLYLPINIPTPI 175

Query: 162 FHNNFDQAEFK-LNLSNYNVASIHF---PPPPTIIPSSST-SSSSLD-WSLPHHLQPQV 214
                 Q + K +++++YN   +H    P  P  +PSS+  SS  LD WSL HHL P +
Sbjct: 176 LQGIDHQNDIKNIDINSYNPNFLHVQNNPILPETLPSSNIPSSYELDTWSLIHHLNPNI 234

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:2088187	367	MYB26 "myb domain protein 26"	0.333	0.297	0.820	6.9e-59
TAIR|locus:2012375	366	MYB61 "AT1G09540" [Arabidopsis	0.535	0.478	0.561	2e-47
TAIR|locus:2195528	370	AtMYB103 "myb domain protein 1	0.321	0.283	0.8	2.6e-47
TAIR|locus:2146804	352	MYB86 "myb domain protein 86"	0.321	0.298	0.8	7.9e-46
TAIR|locus:2027508	314	MYB50 "myb domain protein 50"	0.321	0.334	0.771	5.6e-45
TAIR|locus:2087725	307	MYB67 "myb domain protein 67"	0.418	0.446	0.647	5e-44
TAIR|locus:2133382	348	MYB55 "myb domain protein 55"	0.321	0.301	0.717	5.7e-43
TAIR|locus:2171845	310	MYB53 "myb domain protein 53"	0.321	0.338	0.609	1.2e-40
TAIR|locus:2162585	319	MYB49 "myb domain protein 49"	0.321	0.329	0.638	3.2e-39
TAIR|locus:2103459	343	MYB83 "myb domain protein 83"	0.314	0.300	0.716	3.7e-39

TAIR|locus:2088187 MYB26 "myb domain protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
 Identities = 105/128 (82%), Positives = 108/128 (84%)

Query:     1 MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAG---------LQRCGK 51
             MGHHSCCNKQKVKRGLWSPEEDEKLINY+ +YGHGCWSSVPKHAG         LQRCGK
Sbjct:     1 MGHHSCCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGTYTHIHGFCLQRCGK 60

Query:    52 SCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE-------- 103
             SCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIA+HLPGRTDNE        
Sbjct:    61 SCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSS 120

Query:   104 --KKLMSH 109
               KKLMSH
Sbjct:   121 IKKKLMSH 128

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009901 "anther dehiscence" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2012375 MYB61 "AT1G09540" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 101/180 (56%), Positives = 121/180 (67%)

Query:     1 MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
             MG HSCC KQK+++GLWSPEEDEKL+ ++T +GHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query:    61 LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE-KKLMSHEIVPALASFP 119
             LRPDLKRG+FSP+E  LI+ELH++LGNRW+QIA  LPGRTDNE K L +  I   L    
Sbjct:    61 LRPDLKRGAFSPEEENLIVELHAVLGNRWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRG 120

Query:   120 ADFHNSLCPEEVGFFSLNTNPNLILNSHQ-QDHQFHLPSPPPMFHNNFDQAEFKLNLSNY 178
              D +      EV  FS    P    N     DH+   PS     + +F   E   +LS+Y
Sbjct:   121 IDPNTHKPISEVESFSDKDKPTTSNNKRSGNDHKS--PSSSSATNQDFF-LERPSDLSDY 177

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010214 "seed coat development" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010089 "xylem development" evidence=IMP;RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0001944 "vasculature development" evidence=IMP

GO:0048364 "root development" evidence=IMP

TAIR|locus:2195528 AtMYB103 "myb domain protein 103" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 84/105 (80%), Positives = 94/105 (89%)

Query:     1 MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
             MGHHSCCN+QKVKRGLWSPEEDEKLI Y+TT+G+GCWS VP+ AGLQRCGKSCRLRWINY
Sbjct:     1 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINY 60

Query:    61 LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
             LRPD++RG FSP+E  LII LH ++GNRWA IA HLPGRTDNE K
Sbjct:    61 LRPDIRRGRFSPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIK 105

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:1901430 "positive regulation of syringal lignin biosynthetic process" evidence=IMP

TAIR|locus:2146804 MYB86 "myb domain protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 84/105 (80%), Positives = 94/105 (89%)

Query:     1 MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
             MG HSCC KQK+++GLWSPEEDEKL+NY+T +GHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct:     1 MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query:    61 LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
             LRPDLKRG+FS  E +LIIELH+ LGNRW+QIA  LPGRTDNE K
Sbjct:    61 LRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIK 105

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2027508 MYB50 "myb domain protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 81/105 (77%), Positives = 94/105 (89%)

Query:     1 MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
             M  HSCC KQK+++GLWSPEEDEKL+NY+T +GHGCWSSVPK AGL+RCGKSCRLRWINY
Sbjct:     1 MKRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLERCGKSCRLRWINY 60

Query:    61 LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
             LRPDLKRG+FS +E  LI+ELH++LGNRW+QIA  LPGRTDNE K
Sbjct:    61 LRPDLKRGAFSSEEQNLIVELHAVLGNRWSQIAARLPGRTDNEIK 105

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2087725 MYB67 "myb domain protein 67" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 92/142 (64%), Positives = 104/142 (73%)

Query:     1 MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
             MGH  CC K KVKRGLWSPEEDEKL+ Y+TT+GH  WSSVPK AGLQRCGKSCRLRWINY
Sbjct:    12 MGHR-CCGKHKVKRGLWSPEEDEKLLRYITTHGHPSWSSVPKLAGLQRCGKSCRLRWINY 70

Query:    61 LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE-KKLMSHEIVPALASFP 119
             LRPDL+RGSF+ +E  +II++H ILGN+WAQIA+HLPGRTDNE K   +  I   L S  
Sbjct:    71 LRPDLRRGSFNEEEEQIIIDVHRILGNKWAQIAKHLPGRTDNEVKNFWNSCIKKKLLSQG 130

Query:   120 AD--FHNSLCPEEVGFFSLNTN 139
              D   HN L P      S N N
Sbjct:   131 LDPSTHN-LMPSHKRSSSSNNN 151

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2133382 MYB55 "myb domain protein 55" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 84/117 (71%), Positives = 93/117 (79%)

Query:     1 MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAG------------LQR 48
             MG HSCC KQK+++GLWSPEEDEKL+ Y+T YGHGCWSSVPK AG            LQR
Sbjct:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGTFLFIQIHLLFGLQR 60

Query:    49 CGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
             CGKSCRLRWINYLRPDLKRG+FS  E  LIIELH++LGNRW+QIA  LPGRTDNE K
Sbjct:    61 CGKSCRLRWINYLRPDLKRGAFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIK 117

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2171845 MYB53 "myb domain protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
 Identities = 64/105 (60%), Positives = 80/105 (76%)

Query:     1 MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
             MG     ++  +K+G W PEED+KLINY+  +GH  WS++PK AGL RCGKSCRLRW NY
Sbjct:     1 MGRSPSSDETGLKKGPWLPEEDDKLINYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNY 60

Query:    61 LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
             LRPD+KRG FS +E   I+ LH++LGN+W+ IA HLPGRTDNE K
Sbjct:    61 LRPDIKRGKFSAEEEETILNLHAVLGNKWSMIASHLPGRTDNEIK 105

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2162585 MYB49 "myb domain protein 49" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
 Identities = 67/105 (63%), Positives = 83/105 (79%)

Query:     1 MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
             MG  S   + +VK+G W+PEEDEKL+ Y+ T+G G W ++PK+AGL+RCGKSCRLRW NY
Sbjct:     1 MGKSSSSEESEVKKGPWTPEEDEKLVGYIQTHGPGKWRTLPKNAGLKRCGKSCRLRWTNY 60

Query:    61 LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
             LRPD+KRG FS QE   II+LH +LGN+W+ IA HLPGRTDNE K
Sbjct:    61 LRPDIKRGEFSLQEEETIIQLHRLLGNKWSAIAIHLPGRTDNEIK 105

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2103459 MYB83 "myb domain protein 83" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 76/106 (71%), Positives = 87/106 (82%)

Query:     3 HHSCC---NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWIN 59
             +H+C    NK K+++GLWSP+EDEKLI Y+ T G GCWS + ++AGL RCGKSCRLRWIN
Sbjct:    18 NHACGGNNNKPKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLLRCGKSCRLRWIN 77

Query:    60 YLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
             YLRPDLKRGSFSPQE  LI  LHSILGNRW+QIA  LPGRTDNE K
Sbjct:    78 YLRPDLKRGSFSPQEEDLIFHLHSILGNRWSQIATRLPGRTDNEIK 123

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034125001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (309 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	327
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	1e-62
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	9e-39
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-17
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	9e-14
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	4e-13
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	4e-13
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-12
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	7e-10
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-08
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-07

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  205 bits (523), Expect = 1e-62
 Identities = 84/105 (80%), Positives = 94/105 (89%)

Query: 1   MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
           MG HSCC KQK+++GLWSPEEDEKL+ ++T YGHGCWSSVPK AGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 61  LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           LRPDLKRG+FS QE  LIIELH++LGNRW+QIA  LPGRTDNE K
Sbjct: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIK 105

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  137 bits (346), Expect = 9e-39
 Identities = 69/135 (51%), Positives = 85/135 (62%), Gaps = 11/135 (8%)

Query: 6   CCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDL 65
           CC K  +KRG W+ EEDE L++++   G G W S+PK AGL RCGKSCRLRW+NYLRP +
Sbjct: 17  CCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSV 76

Query: 66  KRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE----------KKLMSHEIVPAL 115
           KRG  +  E  LI+ LH +LGNRW+ IA  +PGRTDNE          KKL+   I P  
Sbjct: 77  KRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQT 136

Query: 116 ASFPADFHNSLCPEE 130
              P D +N   PEE
Sbjct: 137 HK-PLDANNIHKPEE 150

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 74.5 bits (184), Expect = 2e-17
 Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL 61
          RG W+PEEDE LI  V  +G+G WS + KH    R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPG-RTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 64.6 bits (158), Expect = 9e-14
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRP 63
          +G W+ EEDE LI  V  YG   W  + K     R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 69.4 bits (170), Expect = 4e-13
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 9   KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRG 68
           + K K G W   EDE L   V   G   WS V         GK    RW N+L P LK+ 
Sbjct: 15  QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKK 73

Query: 69  SFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           ++S +E   +I+L   LG +W+ IA +   RT  +  
Sbjct: 74  NWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCV 110

Length = 512

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 62.2 bits (152), Expect = 4e-13
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 17 WSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL 61
          W+ EEDE L+  V  YG   W  + K     R  K CR RW N L
Sbjct: 2  WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 61.6 bits (150), Expect = 1e-12
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 17 WSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQE 74
          W+ EEDEKL+  V  YG+  W  + +   L R   +CR RW   LRP   RG ++ +E
Sbjct: 1  WTEEEDEKLLKLVEKYGND-WKQIAEE--LGRTPSACRDRWRRKLRPKRSRGPWTKEE 55

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 53.7 bits (130), Expect = 7e-10
 Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)

Query: 67  RGSFSPQEAALIIELHSILGNR-WAQIARHLPGRTDNE 103
           RG ++P+E  L+IE     GN  W++IA+HLPGRTDN+
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQ 38

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 67  RGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNE 103
           +G ++ +E  L+IEL    G N W +IA+ LPGRT  +
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQ 38

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 69  SFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNE 103
            ++ +E  L++E     G N W +IA+ LPGRT  +
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQ 36

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
PLN03091	459	hypothetical protein; Provisional	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.96
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.8
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.76
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.75
PLN03212	249	Transcription repressor MYB5; Provisional	99.73
PLN03091	459	hypothetical protein; Provisional	99.67
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.59
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.48
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.47
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.35
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.35
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.32
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.3
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.14
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.03
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.03
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.95
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.82
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.59
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.78
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.71
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.5
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.3
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.19
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.87
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.83
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.71
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.61
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.58
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.55
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	96.26
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.21
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.99
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.89
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.82
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.5
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.19
PRK13923	170	putative spore coat protein regulator protein YlbO	94.88
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.24
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	94.01
PRK13923	170	putative spore coat protein regulator protein YlbO	93.66
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	93.37
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.4
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	91.27
KOG4282	345	consensus Transcription factor GT-2 and related pr	91.25
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	91.11
KOG2656	445	consensus DNA methyltransferase 1-associated prote	89.7
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	80.75

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=2.6e-34  Score=283.69  Aligned_cols=115  Identities=73%  Similarity=1.322  Sum_probs=111.7

Q ss_pred             CCCCCccCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHH
Q 043612            1 MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIE   80 (327)
Q Consensus         1 mgR~~c~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~   80 (327)
                      |||++||.|++++|++||+|||++|+++|++||.++|..||+.++.+|+++|||+||.++|+|.+++++||+|||++|++
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998768999999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612           81 LHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPAL  115 (327)
Q Consensus        81 lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~  115 (327)
                      ++++||++|++||+.|+|||+++||+||+.++++.
T Consensus        81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKk  115 (459)
T PLN03091         81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK  115 (459)
T ss_pred             HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999877763

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=4.4e-33  Score=258.45  Aligned_cols=113  Identities=52%  Similarity=1.014  Sum_probs=108.7

Q ss_pred             CCCccCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHH
Q 043612            3 HHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELH   82 (327)
Q Consensus         3 R~~c~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV   82 (327)
                      |.+||.|..++|++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.++|+|.+++++||+|||++|++++
T Consensus        14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~   93 (249)
T PLN03212         14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH   93 (249)
T ss_pred             CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence            56899999999999999999999999999999899999999866899999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612           83 SILGNRWAQIARHLPGRTDNEKKLMSHEIVPAL  115 (327)
Q Consensus        83 ~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~  115 (327)
                      .+||++|+.||+.|+|||+++||+||..+++..
T Consensus        94 ~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~  126 (249)
T PLN03212         94 RLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK  126 (249)
T ss_pred             HhccccHHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence            999999999999999999999999999887764

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.96  E-value=1.3e-29  Score=235.79  Aligned_cols=104  Identities=54%  Similarity=0.952  Sum_probs=99.9

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHH
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQ   91 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~   91 (327)
                      +.||+||+|||++|+++|++||.++|..||+.+|.+|++++||.||.++|+|+++||.||+|||++|+++++.+|++|+.
T Consensus         7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~   86 (238)
T KOG0048|consen    7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSL   86 (238)
T ss_pred             ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHH
Confidence            44799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCHHHHHhhhhhhcccc
Q 043612           92 IARHLPGRTDNEKKLMSHEIVPAL  115 (327)
Q Consensus        92 IA~~lpgRT~~qcK~Rw~~ilr~~  115 (327)
                      ||+.|||||++++|+.|...+++.
T Consensus        87 IA~~LPGRTDNeIKN~Wnt~lkkk  110 (238)
T KOG0048|consen   87 IAGRLPGRTDNEVKNHWNTHLKKK  110 (238)
T ss_pred             HHhhCCCcCHHHHHHHHHHHHHHH
Confidence            999999999999999998876553

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.80  E-value=2.5e-20  Score=173.49  Aligned_cols=96  Identities=15%  Similarity=0.117  Sum_probs=88.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC-CCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCch
Q 043612           64 DLKRGSFSPQEAALIIELHSILG-NRWAQIARHLP-GRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPN  141 (327)
Q Consensus        64 ~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lp-gRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~  141 (327)
                      .+.||+||.|||++|+++|++|| ++|..||+.++ +|++++||              .||+|+|+|+++++.||.+|+.
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCR--------------lRW~NyLrP~ikrg~fT~eEe~   71 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCR--------------LRWTNYLRPDLKRGNFSDEEED   71 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHH--------------HHhhcccCCCccCCCCCHHHHH
Confidence            45579999999999999999999 56999999998 99999999              8899999999999999999999


Q ss_pred             hhhhhhhccCCCCCCCCCCCCCCCCCHHHHhhhc
Q 043612          142 LILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLNL  175 (327)
Q Consensus       142 lI~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~n  175 (327)
                      +|+++|+.+|..| ...|..||| +|+++||||=
T Consensus        72 ~Ii~lH~~~GNrW-s~IA~~LPG-RTDNeIKN~W  103 (238)
T KOG0048|consen   72 LIIKLHALLGNRW-SLIAGRLPG-RTDNEVKNHW  103 (238)
T ss_pred             HHHHHHHHHCcHH-HHHHhhCCC-cCHHHHHHHH
Confidence            9999999988885 555999999 7779999995

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.76  E-value=3.3e-19  Score=182.33  Aligned_cols=114  Identities=26%  Similarity=0.436  Sum_probs=104.7

Q ss_pred             CCCCCccCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHH
Q 043612            1 MGHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIE   80 (327)
Q Consensus         1 mgR~~c~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~   80 (327)
                      +||+.....|.+++|.||.+||.+|..+|.+||.++|-+|-..++ +|+..|||+||.+.|+...+++.||-.||+.|+.
T Consensus       347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~  425 (939)
T KOG0049|consen  347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLY  425 (939)
T ss_pred             hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHH
Confidence            588889999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHHhC-CCHHHHHhhCCCCCHHH---HHhhhhhhcccc
Q 043612           81 LHSILG-NRWAQIARHLPGRTDNE---KKLMSHEIVPAL  115 (327)
Q Consensus        81 lV~~~G-~kW~~IA~~lpgRT~~q---cK~Rw~~ilr~~  115 (327)
                      +|.+|| ++|.+||.+||.||.+|   ||.|+..+..++
T Consensus       426 ~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl  464 (939)
T KOG0049|consen  426 AVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRL  464 (939)
T ss_pred             HHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHHH
Confidence            999999 78999999999999965   555555444443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.75  E-value=2.8e-19  Score=182.85  Aligned_cols=141  Identities=21%  Similarity=0.269  Sum_probs=125.4

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGH---GCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNR   88 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~---~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~k   88 (327)
                      +++..||.|||.+|+.+|+....   .+|++|-..|+ ||+..|...||.+.|+|++++|+||.+||.+|+.+|.+||.+
T Consensus       303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp-gr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~k  381 (939)
T KOG0049|consen  303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP-GRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAK  381 (939)
T ss_pred             HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC-CcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCcc
Confidence            55789999999999999998743   47999999999 999999999999999999999999999999999999999965


Q ss_pred             -HHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchhhhhhhhccCCCCCCCCCCCCCCCCC
Q 043612           89 -WAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFD  167 (327)
Q Consensus        89 -W~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~lI~~~~~~~g~~~~~~pa~~lp~~~~  167 (327)
                       |.+|-..+|||++.|||.||...              |+-+.+...|+-.||.-|+.++.+||--.|..-+..||..+.
T Consensus       382 dw~k~R~~vPnRSdsQcR~RY~nv--------------L~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~  447 (939)
T KOG0049|consen  382 DWAKVRQAVPNRSDSQCRERYTNV--------------LNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTS  447 (939)
T ss_pred             chhhHHHhcCCccHHHHHHHHHHH--------------HHHhhccCceeecchHHHHHHHHHHccchHHHHHHHccccch
Confidence             99999999999999999666654              444455578888999999999999997777777888888765

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.73  E-value=1.4e-18  Score=161.90  Aligned_cols=96  Identities=18%  Similarity=0.200  Sum_probs=85.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhC-CCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCc
Q 043612           63 PDLKRGSFSPQEAALIIELHSILG-NRWAQIARHL-PGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNP  140 (327)
Q Consensus        63 p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~l-pgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd  140 (327)
                      +.+++++||+|||++|+++|++|| .+|..||+.+ ++||++|||              +||.|+|+|.+.+.+||.+||
T Consensus        21 ~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCR--------------eRW~N~L~P~I~kgpWT~EED   86 (249)
T PLN03212         21 MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCR--------------LRWMNYLRPSVKRGGITSDEE   86 (249)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHH--------------HHHHHhhchhcccCCCChHHH
Confidence            478899999999999999999999 5799999998 699999999              888899999999999999999


Q ss_pred             hhhhhhhhccCCCCCCCCCCCCCCCCCHHHHhhh
Q 043612          141 NLILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLN  174 (327)
Q Consensus       141 ~lI~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~  174 (327)
                      .+|+.++..+|..| ...+..+||++ .+.++|.
T Consensus        87 ~lLlel~~~~GnKW-s~IAk~LpGRT-DnqIKNR  118 (249)
T PLN03212         87 DLILRLHRLLGNRW-SLIAGRIPGRT-DNEIKNY  118 (249)
T ss_pred             HHHHHHHHhccccH-HHHHhhcCCCC-HHHHHHH
Confidence            99999999999764 55588999955 5677664

>PLN03091 hypothetical protein; Provisional

Probab=99.67  E-value=2.2e-17  Score=164.06  Aligned_cols=96  Identities=18%  Similarity=0.223  Sum_probs=84.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhC-CCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCc
Q 043612           63 PDLKRGSFSPQEAALIIELHSILG-NRWAQIARHL-PGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNP  140 (327)
Q Consensus        63 p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~l-pgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd  140 (327)
                      ..++|++||+|||++|+++|.+|| .+|..||+.+ +||+++|||              +||.|+|+|.+.+.+||.+||
T Consensus        10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCR--------------ERW~NyLdP~IkKgpWT~EED   75 (459)
T PLN03091         10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCR--------------LRWINYLRPDLKRGTFSQQEE   75 (459)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHh--------------HHHHhccCCcccCCCCCHHHH
Confidence            578999999999999999999999 5799999988 599999999              788899999999999999999


Q ss_pred             hhhhhhhhccCCCCCCCCCCCCCCCCCHHHHhhh
Q 043612          141 NLILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLN  174 (327)
Q Consensus       141 ~lI~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~  174 (327)
                      .+|+.+++.+|..|..+ +..|+||+ .+.|+|.
T Consensus        76 ~lLLeL~k~~GnKWskI-Ak~LPGRT-DnqIKNR  107 (459)
T PLN03091         76 NLIIELHAVLGNRWSQI-AAQLPGRT-DNEIKNL  107 (459)
T ss_pred             HHHHHHHHHhCcchHHH-HHhcCCCC-HHHHHHH
Confidence            99999999999865554 88999955 5556653

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.59  E-value=3.7e-16  Score=115.45  Aligned_cols=60  Identities=42%  Similarity=0.899  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHH
Q 043612           17 WSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALI   78 (327)
Q Consensus        17 WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~L   78 (327)
                      ||+|||++|+++|.+||. +|..||+.|+ .|++.||+.||.+.|.+.+++++||.+||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999995 7999999997 89999999999999999999999999999987

...

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=1.1e-14  Score=146.58  Aligned_cols=105  Identities=27%  Similarity=0.591  Sum_probs=99.2

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHH
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQ   91 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~   91 (327)
                      ++.|.|+..||+.|..+|.+||...|.+|++.+. .++++||+.||..+++|.+++..|+.|||++|+.+...+...|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            5678999999999999999999999999999998 889999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612           92 IARHLPGRTDNEKKLMSHEIVPALASF  118 (327)
Q Consensus        92 IA~~lpgRT~~qcK~Rw~~ilr~~k~~  118 (327)
                      ||..| |||+.||-.||..++-...+.
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~  109 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSY  109 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            99999 999999999999988765443

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.47  E-value=2.6e-14  Score=145.62  Aligned_cols=108  Identities=32%  Similarity=0.485  Sum_probs=102.6

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 043612            9 KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNR   88 (327)
Q Consensus         9 K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~k   88 (327)
                      ..+++.|.|+..||+.|..+|++||..+|..||..+. .|+++||+.||.++++|.++++.|+.|||+.|+.+..++|..
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            3567889999999999999999999999999999999 799999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612           89 WAQIARHLPGRTDNEKKLMSHEIVPALAS  117 (327)
Q Consensus        89 W~~IA~~lpgRT~~qcK~Rw~~ilr~~k~  117 (327)
                      |+.||..+++||..+|.+||...+....+
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999988777665

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.35  E-value=4.7e-13  Score=98.84  Aligned_cols=60  Identities=25%  Similarity=0.326  Sum_probs=48.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchhh
Q 043612           70 FSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLI  143 (327)
Q Consensus        70 WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~lI  143 (327)
                      ||+|||++|+++|.+||.+|.+||+.|+.||..+|+.||...              |.|.+++.+|+.+|+..|
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~--------------l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNH--------------LRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHT--------------TSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHH--------------CcccccCCCcCHHHHhcC
Confidence            999999999999999999999999999669999999888762              345567788998887654

...

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.35  E-value=1.2e-12  Score=93.13  Aligned_cols=46  Identities=26%  Similarity=0.599  Sum_probs=41.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-HHHHHhhCC-CCCHHHHHhhhhhhc
Q 043612           67 RGSFSPQEAALIIELHSILGNR-WAQIARHLP-GRTDNEKKLMSHEIV  112 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G~k-W~~IA~~lp-gRT~~qcK~Rw~~il  112 (327)
                      |++||.|||++|+++|.+||.+ |..||..|+ |||..||+.||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999998763

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.32  E-value=7.9e-13  Score=136.26  Aligned_cols=103  Identities=26%  Similarity=0.489  Sum_probs=91.9

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCC--CCCCCCHHHHHHHHHHHH-------
Q 043612           13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDL--KRGSFSPQEAALIIELHS-------   83 (327)
Q Consensus        13 kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~l--kkg~WT~EED~~Ll~lV~-------   83 (327)
                      .+|+||+||++.|..++.++| ++|..|++.|+  |.+..|++||+++...+-  +++.||.||.+.|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            799999999999999999999 46999999997  999999999999999885  899999999999999995       


Q ss_pred             Hh-------------------CCCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612           84 IL-------------------GNRWAQIARHLPGRTDNEKKLMSHEIVPALASF  118 (327)
Q Consensus        84 ~~-------------------G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~  118 (327)
                      ++                   +-.|..|++.+..|+..|||..|..++..-...
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n  513 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFN  513 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhh
Confidence            23                   124999999999999999999999987764443

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.30  E-value=3e-13  Score=96.31  Aligned_cols=48  Identities=44%  Similarity=0.806  Sum_probs=43.3

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecc
Q 043612           14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL   61 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L   61 (327)
                      |++||+|||++|+++|.+||.++|..||+.|+.+||+.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998779999999988999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.14  E-value=9.5e-11  Score=80.69  Aligned_cols=47  Identities=34%  Similarity=0.676  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcc
Q 043612           67 RGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVP  113 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr  113 (327)
                      +++||++||.+|+.++.+|| .+|..||..|++||+.+|+.||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998754

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.03  E-value=2.9e-10  Score=117.59  Aligned_cols=121  Identities=23%  Similarity=0.240  Sum_probs=100.1

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCC---------------C--------Cccccccccccccccccccc---cceecccCCC
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGH---------------G--------CWSSVPKHAGLQRCGKSCRL---RWINYLRPDL   65 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~---------------~--------nW~~IA~~l~~gRt~~QCr~---Rw~~~L~p~l   65 (327)
                      ++-+.|+.+||++|.+.|..|-.               .        -|..|...|+ -|+......   |=.+.|..  
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~--  382 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFEN--  382 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccc--
Confidence            34489999999999999998811               1        1567778888 588888766   44444544  


Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchhhhh
Q 043612           66 KRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILN  145 (327)
Q Consensus        66 kkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~lI~~  145 (327)
                      ++|.||+||++.|..+|.++|+.|..|++.| ||.+..||.||+.++....+            ..+..|+.+|...|+.
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~------------~~r~~Ws~eEe~~Llk  449 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSK------------RNRGAWSIEEEEKLLK  449 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccc------------cccCcchHHHHHHHHH
Confidence            8999999999999999999999999999999 99999999999998887654            3568999999999988


Q ss_pred             hhh
Q 043612          146 SHQ  148 (327)
Q Consensus       146 ~~~  148 (327)
                      .+.
T Consensus       450 ~V~  452 (607)
T KOG0051|consen  450 TVN  452 (607)
T ss_pred             HHH
Confidence            773

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.03  E-value=5.6e-10  Score=75.77  Aligned_cols=43  Identities=30%  Similarity=0.601  Sum_probs=41.1

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhh
Q 043612           69 SFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEI  111 (327)
Q Consensus        69 ~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~i  111 (327)
                      +||.+||..|++++.++| .+|..||+.|++||..+|+.||..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 8999999999999999999999865

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.95  E-value=2e-10  Score=79.00  Aligned_cols=48  Identities=42%  Similarity=0.868  Sum_probs=44.2

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceeccc
Q 043612           14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLR   62 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~   62 (327)
                      ++.||++||++|+.++..||..+|..||..++ +|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            47899999999999999999667999999999 9999999999987654

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.82  E-value=1.1e-09  Score=74.38  Aligned_cols=44  Identities=41%  Similarity=0.806  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceec
Q 043612           16 LWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY   60 (327)
Q Consensus        16 ~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~   60 (327)
                      .||.+||+.|+.++.++|..+|..||+.++ +|++.+|+.||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999778999999999 89999999999764

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.59  E-value=2.4e-08  Score=102.32  Aligned_cols=99  Identities=16%  Similarity=0.165  Sum_probs=88.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchh
Q 043612           64 DLKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNL  142 (327)
Q Consensus        64 ~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~l  142 (327)
                      ..+.|.|+..||+.|..+|++|| ++|+.||..|.-|++++|+              .||+++++|.+++..|+.+|+..
T Consensus        17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~--------------~rw~~~lnp~lk~~~~~~eed~~   82 (512)
T COG5147          17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSS--------------NRWNNHLNPQLKKKNWSEEEDEQ   82 (512)
T ss_pred             eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhccccccccc--------------chhhhhhchhcccccccHHHHHH
Confidence            45678999999999999999999 6799999999889999999              77789999999999999999999


Q ss_pred             hhhhhhccCCCCCCCCCCCCCCCCCHHHHhhhccC
Q 043612          143 ILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLNLSN  177 (327)
Q Consensus       143 I~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~n~n  177 (327)
                      |+.+....|..+. ..+..+++++.++.+++|++.
T Consensus        83 li~l~~~~~~~ws-tia~~~d~rt~~~~~ery~~~  116 (512)
T COG5147          83 LIDLDKELGTQWS-TIADYKDRRTAQQCVERYVNT  116 (512)
T ss_pred             HHHHHHhcCchhh-hhccccCccchHHHHHHHHHH
Confidence            9999988777754 448999988999999998754

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.78  E-value=1e-05  Score=60.39  Aligned_cols=49  Identities=12%  Similarity=0.298  Sum_probs=43.3

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCc---ccccccccccc-ccccccccceecc
Q 043612           13 KRGLWSPEEDEKLINYVTTYGHGCW---SSVPKHAGLQR-CGKSCRLRWINYL   61 (327)
Q Consensus        13 kkg~WT~EEDe~L~~lV~kyg~~nW---~~IA~~l~~gR-t~~QCr~Rw~~~L   61 (327)
                      ++-.||+||.++++++|+.+|.++|   +.|++.|...| |..||+.+.+++.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4668999999999999999998899   99999887556 9999999887764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.71  E-value=9.8e-06  Score=82.80  Aligned_cols=95  Identities=16%  Similarity=0.115  Sum_probs=73.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchhh
Q 043612           65 LKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLI  143 (327)
Q Consensus        65 lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~lI  143 (327)
                      ++-|.|+.-||+.|..+|.+|| +.|+.|+..++-.|..||+.||              ...++|.+++..|+.+||.-+
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw--------------~e~ldp~i~~tews~eederl   70 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARW--------------EEWLDPAIKKTEWSREEDERL   70 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHH--------------HHHhCHHHhhhhhhhhHHHHH
Confidence            4568899999999999999999 5699999999999999999555              457899999999999999998


Q ss_pred             hhhhhccCCCCCCCCCCCCCCCCCHHHHhhhc
Q 043612          144 LNSHQQDHQFHLPSPPPMFHNNFDQAEFKLNL  175 (327)
Q Consensus       144 ~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~n  175 (327)
                      +.+...--.-|.++ +.+ -|++.++=.-.|+
T Consensus        71 Lhlakl~p~qwrtI-a~i-~gr~~~qc~eRy~  100 (617)
T KOG0050|consen   71 LHLAKLEPTQWRTI-ADI-MGRTSQQCLERYN  100 (617)
T ss_pred             HHHHHhcCCccchH-HHH-hhhhHHHHHHHHH
Confidence            88765434444444 333 2435555555554

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.50  E-value=3e-05  Score=77.88  Aligned_cols=50  Identities=22%  Similarity=0.633  Sum_probs=46.4

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceeccc
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLR   62 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~   62 (327)
                      +-...||.+|+-+|++++..||-|||..||+++| .|+..+|+++|.+++-
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHHh
Confidence            4567899999999999999999999999999999 9999999999998754

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.30  E-value=0.00046  Score=69.55  Aligned_cols=52  Identities=23%  Similarity=0.336  Sum_probs=45.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612           64 DLKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPAL  115 (327)
Q Consensus        64 ~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~  115 (327)
                      .+-...||.+|+-+|++++..|| ++|..||..+..||..+||..|.++.-..
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~s  121 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVNS  121 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhcC
Confidence            34557899999999999999999 89999999999999999999988765443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.19  E-value=0.00098  Score=49.73  Aligned_cols=45  Identities=13%  Similarity=0.208  Sum_probs=38.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CH---HHHHhhCC-CC-CHHHHHhhhhhh
Q 043612           67 RGSFSPQEAALIIELHSILGN-RW---AQIARHLP-GR-TDNEKKLMSHEI  111 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G~-kW---~~IA~~lp-gR-T~~qcK~Rw~~i  111 (327)
                      +-.||+||..+++++++.+|. +|   ..|++.|. .| |..||+.+....
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy   53 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKY   53 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            558999999999999999996 99   99999874 45 999999776653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.87  E-value=0.0007  Score=53.00  Aligned_cols=54  Identities=22%  Similarity=0.351  Sum_probs=39.1

Q ss_pred             CCCCCHHHHHHHHHHHHH------hC--C------CHHHHHhhC----CCCCHHHHHhhhhhhcccccCCCc
Q 043612           67 RGSFSPQEAALIIELHSI------LG--N------RWAQIARHL----PGRTDNEKKLMSHEIVPALASFPA  120 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~------~G--~------kW~~IA~~l----pgRT~~qcK~Rw~~ilr~~k~~~~  120 (327)
                      |..||.+|...|++++..      ++  +      -|..||..|    -.||+.||+.||..|.+.-+....
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~   72 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKD   72 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            357999999999999877      21  1      299999987    469999999999999988766644

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.83  E-value=0.0014  Score=66.67  Aligned_cols=45  Identities=27%  Similarity=0.465  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhh
Q 043612           67 RGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEI  111 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~i  111 (327)
                      ...||.+|..+|++.++.||..|.+||.++..||..||-.+|.+|
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            458999999999999999999999999999999999999998774

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.71  E-value=0.0021  Score=66.58  Aligned_cols=47  Identities=21%  Similarity=0.444  Sum_probs=43.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhh
Q 043612           65 LKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEI  111 (327)
Q Consensus        65 lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~i  111 (327)
                      ..++.||.+|..+|++++..||..|.+||.++.+||..||-.+|..+
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            44678999999999999999999999999999999999999888763

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.61  E-value=0.00059  Score=69.39  Aligned_cols=46  Identities=26%  Similarity=0.617  Sum_probs=42.3

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceec
Q 043612           13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY   60 (327)
Q Consensus        13 kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~   60 (327)
                      ....||.+|..+|+++|+.||. +|.+||++++ +|+..||..||.++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            5669999999999999999996 5999999999 99999999998754

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.58  E-value=0.0022  Score=57.21  Aligned_cols=48  Identities=19%  Similarity=0.279  Sum_probs=42.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHh---CCC----HHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612           66 KRGSFSPQEAALIIELHSIL---GNR----WAQIARHLPGRTDNEKKLMSHEIVPA  114 (327)
Q Consensus        66 kkg~WT~EED~~Ll~lV~~~---G~k----W~~IA~~lpgRT~~qcK~Rw~~ilr~  114 (327)
                      +...||.|||.+|.+.|-+|   |+.    +..++..| +||+..|.=||...+|.
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRK   57 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHH
Confidence            56789999999999999887   432    89999999 99999999999998875

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.55  E-value=0.0035  Score=47.98  Aligned_cols=49  Identities=12%  Similarity=0.197  Sum_probs=32.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-------CC--HHHHHhhCC-CCCHHHHHhhhhhhcccc
Q 043612           67 RGSFSPQEAALIIELHSILG-------NR--WAQIARHLP-GRTDNEKKLMSHEIVPAL  115 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G-------~k--W~~IA~~lp-gRT~~qcK~Rw~~ilr~~  115 (327)
                      |.+||.|||+.|++.|.++.       ++  |.++++..+ .+|-...|+||.+.++..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            46899999999999997652       12  999999977 899999999998766543

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=96.26  E-value=0.0063  Score=56.12  Aligned_cols=96  Identities=22%  Similarity=0.252  Sum_probs=68.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccc--ccccccccccceecccC----------------C-----CCCCCCCH
Q 043612           16 LWSPEEDEKLINYVTTYGHGCWSSVPKHAGL--QRCGKSCRLRWINYLRP----------------D-----LKRGSFSP   72 (327)
Q Consensus        16 ~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~--gRt~~QCr~Rw~~~L~p----------------~-----lkkg~WT~   72 (327)
                      +|++++|-+|+.+|..-.  +-..|+..+..  .-|-..+.+||+..|-.                .     ..+-+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999998754  45566554433  33566778899866432                1     13568999


Q ss_pred             HHHHHHHHHHHHhCC---CHHHHHhh-----CCCCCHHHHHhhhhhhcc
Q 043612           73 QEAALIIELHSILGN---RWAQIARH-----LPGRTDNEKKLMSHEIVP  113 (327)
Q Consensus        73 EED~~Ll~lV~~~G~---kW~~IA~~-----lpgRT~~qcK~Rw~~ilr  113 (327)
                      +|+++|.........   .+.+|=..     -++||++++...|+.+.+
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkq  127 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQ  127 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHH
Confidence            999999997766543   36665443     378999999999996543

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.21  E-value=0.0018  Score=67.14  Aligned_cols=47  Identities=26%  Similarity=0.650  Sum_probs=42.9

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceec
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY   60 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~   60 (327)
                      .-++.||.+|+-+|+++|+.||. +|.+||.+++ +|+..||..++.+.
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            45789999999999999999996 5999999999 99999999988754

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.99  E-value=0.0091  Score=45.98  Aligned_cols=51  Identities=24%  Similarity=0.338  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----C-------------CHHHHHhhC-----CCCCHHHHHhhhhhhcccccC
Q 043612           67 RGSFSPQEAALIIELHSILG----N-------------RWAQIARHL-----PGRTDNEKKLMSHEIVPALAS  117 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G----~-------------kW~~IA~~l-----pgRT~~qcK~Rw~~ilr~~k~  117 (327)
                      +..||.+|...|++++.++.    +             -|..|+..|     +.||..++|.+|..+....+.
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk   74 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK   74 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            45799999999999998862    1             199999987     369999999999998876544

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.89  E-value=0.0015  Score=49.93  Aligned_cols=52  Identities=25%  Similarity=0.447  Sum_probs=33.2

Q ss_pred             ccCCCHHHHHHHHHHHHHhCC------CC--ccccccccccccccccccccceecccCCC
Q 043612           14 RGLWSPEEDEKLINYVTTYGH------GC--WSSVPKHAGLQRCGKSCRLRWINYLRPDL   65 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~------~n--W~~IA~~l~~gRt~~QCr~Rw~~~L~p~l   65 (327)
                      |.+||.|||+.|++.|.++..      ||  |+++++.-++.+|..+-|+||.+.|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            568999999999999976621      22  99999887767899999999999887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.82  E-value=0.0015  Score=51.11  Aligned_cols=48  Identities=29%  Similarity=0.662  Sum_probs=32.9

Q ss_pred             ccCCCHHHHHHHHHHHHH--h----CC-C------Ccccccccc---ccccccccccccceecc
Q 043612           14 RGLWSPEEDEKLINYVTT--Y----GH-G------CWSSVPKHA---GLQRCGKSCRLRWINYL   61 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~k--y----g~-~------nW~~IA~~l---~~gRt~~QCr~Rw~~~L   61 (327)
                      |..||.+|...|+.++..  +    +. +      -|..||..|   |..|++.||+.||.++.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            457999999999999987  2    11 1      399999887   44799999999998753

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.50  E-value=0.0023  Score=57.05  Aligned_cols=50  Identities=28%  Similarity=0.589  Sum_probs=42.2

Q ss_pred             CcccCCCHHHHHHHHHHHHHh---CC---CCccccccccccccccccccccceecccC
Q 043612           12 VKRGLWSPEEDEKLINYVTTY---GH---GCWSSVPKHAGLQRCGKSCRLRWINYLRP   63 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~ky---g~---~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p   63 (327)
                      .+...||.|||.+|.+.|-+|   |.   ....++++.++  ||+..|.-||..++..
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            467789999999999999998   21   14788999886  9999999999988763

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.19  E-value=0.0046  Score=60.62  Aligned_cols=50  Identities=20%  Similarity=0.493  Sum_probs=46.1

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceeccc
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLR   62 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~   62 (327)
                      +---.|+..|+-+|++.....|.|||..||..+| .|+...|+++|.+++.
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            3345799999999999999999999999999999 9999999999998876

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.88  E-value=0.024  Score=51.17  Aligned_cols=49  Identities=12%  Similarity=0.189  Sum_probs=40.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC-------HHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612           65 LKRGSFSPQEAALIIELHSILGNR-------WAQIARHLPGRTDNEKKLMSHEIVPA  114 (327)
Q Consensus        65 lkkg~WT~EED~~Ll~lV~~~G~k-------W~~IA~~lpgRT~~qcK~Rw~~ilr~  114 (327)
                      .+...||.|||.+|.+.|-.|+..       ...++..| +||..+|.-||...+|.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk   58 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRK   58 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHH
Confidence            356789999999999999888632       67777788 99999999999766663

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.24  E-value=0.044  Score=53.95  Aligned_cols=47  Identities=26%  Similarity=0.402  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcc
Q 043612           67 RGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVP  113 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr  113 (327)
                      -..|+.+|+.+|++...-+| ++|..||..++.|+..+||..|.+..-
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34799999999999999999 899999999999999999988876443

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=94.01  E-value=0.086  Score=59.19  Aligned_cols=101  Identities=14%  Similarity=0.290  Sum_probs=77.8

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------cceec---------------------------
Q 043612           15 GLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRL-------RWINY---------------------------   60 (327)
Q Consensus        15 g~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~-------Rw~~~---------------------------   60 (327)
                      ..||.-|=..++.+..+||..+-..||..|. +++...++.       ||..+                           
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4599999999999999999999999999997 777655432       22110                           


Q ss_pred             ---------------cc-CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhC------------CCCCHHHHHhhhhhh
Q 043612           61 ---------------LR-PDLKRGSFSPQEAALIIELHSILG-NRWAQIARHL------------PGRTDNEKKLMSHEI  111 (327)
Q Consensus        61 ---------------L~-p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~l------------pgRT~~qcK~Rw~~i  111 (327)
                                     +. +..++..||.|||..|+-.+.+|| .+|..|-..+            ..||+.++..|-..|
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                           00 122345699999999999999999 6799985532            579999999999988


Q ss_pred             ccccc
Q 043612          112 VPALA  116 (327)
Q Consensus       112 lr~~k  116 (327)
                      +..+.
T Consensus       984 ~~~~~  988 (1033)
T PLN03142        984 IRLIE  988 (1033)
T ss_pred             HHHHH
Confidence            88873

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.66  E-value=0.013  Score=52.79  Aligned_cols=50  Identities=24%  Similarity=0.448  Sum_probs=39.6

Q ss_pred             CCcccCCCHHHHHHHHHHHHHhCCCC------ccccccccccccccccccccceeccc
Q 043612           11 KVKRGLWSPEEDEKLINYVTTYGHGC------WSSVPKHAGLQRCGKSCRLRWINYLR   62 (327)
Q Consensus        11 k~kkg~WT~EEDe~L~~lV~kyg~~n------W~~IA~~l~~gRt~~QCr~Rw~~~L~   62 (327)
                      +.+...||.|||.+|.+.|-+|+...      ...++..+.  |++.+|..||..++.
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            45778999999999999999985432      556666765  999999999966554

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=93.37  E-value=0.012  Score=45.33  Aligned_cols=49  Identities=22%  Similarity=0.413  Sum_probs=39.0

Q ss_pred             cccCCCHHHHHHHHHHHHHh-----CC-----------CCccccccccc----cccccccccccceecc
Q 043612           13 KRGLWSPEEDEKLINYVTTY-----GH-----------GCWSSVPKHAG----LQRCGKSCRLRWINYL   61 (327)
Q Consensus        13 kkg~WT~EEDe~L~~lV~ky-----g~-----------~nW~~IA~~l~----~gRt~~QCr~Rw~~~L   61 (327)
                      ++..||.+|.+.|+++|.+|     +.           ..|..|+..|.    ..|+..|++.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            45789999999999999987     21           13999998772    2689999999998754

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.40  E-value=0.38  Score=37.90  Aligned_cols=47  Identities=21%  Similarity=0.373  Sum_probs=36.2

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------CHHHHHhhC---C--CCCHHHHHhhhhhhcccc
Q 043612           69 SFSPQEAALIIELHSIL---GN----------RWAQIARHL---P--GRTDNEKKLMSHEIVPAL  115 (327)
Q Consensus        69 ~WT~EED~~Ll~lV~~~---G~----------kW~~IA~~l---p--gRT~~qcK~Rw~~ilr~~  115 (327)
                      .||.++++.|++++.+.   |+          .|..|+..|   .  ..|..||++||..+.+.-
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y   65 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY   65 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence            49999999999988653   21          199999987   2  347899999998876653

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=91.27  E-value=0.25  Score=42.03  Aligned_cols=54  Identities=17%  Similarity=0.369  Sum_probs=42.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHhhC------------CCCCHHHHHhhhhhhcccccC
Q 043612           64 DLKRGSFSPQEAALIIELHSILGN----RWAQIARHL------------PGRTDNEKKLMSHEIVPALAS  117 (327)
Q Consensus        64 ~lkkg~WT~EED~~Ll~lV~~~G~----kW~~IA~~l------------pgRT~~qcK~Rw~~ilr~~k~  117 (327)
                      ..++..||++||..|+-.+.+||-    .|..|-..+            ..||+.++..|=..|++.+.+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~K  115 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIEK  115 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHHH
Confidence            446778999999999999999995    598887753            469999999998888877644

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=91.25  E-value=0.21  Score=49.01  Aligned_cols=56  Identities=18%  Similarity=0.261  Sum_probs=44.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----------CCHHHHHhhC----CCCCHHHHHhhhhhhcccccCCCccc
Q 043612           67 RGSFSPQEAALIIELHSILG----------NRWAQIARHL----PGRTDNEKKLMSHEIVPALASFPADF  122 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G----------~kW~~IA~~l----pgRT~~qcK~Rw~~ilr~~k~~~~r~  122 (327)
                      ...|+.+|-..||++..+.-          .-|..||+.+    --||+.|||.||..+.+..++.+...
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~  123 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKK  123 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence            36899999999999887642          2399999965    34999999999999988876664433

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=91.11  E-value=0.31  Score=49.08  Aligned_cols=43  Identities=21%  Similarity=0.243  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhh
Q 043612           68 GSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHE  110 (327)
Q Consensus        68 g~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~  110 (327)
                      .+||.+|-++..++....|..++.||..+|.|..+|+|.+|.+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~  408 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIK  408 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHH
Confidence            4799999999999999999999999999999999999988865

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=89.70  E-value=0.13  Score=51.91  Aligned_cols=82  Identities=21%  Similarity=0.255  Sum_probs=60.9

Q ss_pred             CccccccccccccccccccccceecccCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCCHH
Q 043612           36 CWSSVPKHAGLQRCGKSCRLRWINYLRPD-------------------------LKRGSFSPQEAALIIELHSILGNRWA   90 (327)
Q Consensus        36 nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~-------------------------lkkg~WT~EED~~Ll~lV~~~G~kW~   90 (327)
                      .|..+.=..+ -|...---.+|.+.-++.                         +....||++|-+.|.++++.|.-+|.
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            4666553333 566666666777663321                         12346999999999999999999999


Q ss_pred             HHHhh-----CCC-CCHHHHHhhhhhhcccccCC
Q 043612           91 QIARH-----LPG-RTDNEKKLMSHEIVPALASF  118 (327)
Q Consensus        91 ~IA~~-----lpg-RT~~qcK~Rw~~ilr~~k~~  118 (327)
                      .||..     ++. ||-..+|.||..+.+.+..-
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kA  187 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKA  187 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHc
Confidence            99987     555 99999999999988876443

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=80.75  E-value=1.5  Score=40.73  Aligned_cols=77  Identities=13%  Similarity=0.029  Sum_probs=53.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCHHHHHhhC---CCCCHHHHHhhhhhhcccccCCC--ccccCCCCccc-----cCCCCCCC
Q 043612           69 SFSPQEAALIIELHSILGNRWAQIARHL---PGRTDNEKKLMSHEIVPALASFP--ADFHNSLCPEE-----VGFFSLNT  138 (327)
Q Consensus        69 ~WT~EED~~Ll~lV~~~G~kW~~IA~~l---pgRT~~qcK~Rw~~ilr~~k~~~--~r~~N~L~P~i-----~~~~wt~e  138 (327)
                      .|++++|-+|+.+|.. |+.=..|+..+   -..|-.++..||..++..-.-.+  ..-...|.|..     .+.+|+.+
T Consensus         1 rW~~~DDl~Li~av~~-~~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~~   79 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQ-TNDLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSKE   79 (199)
T ss_pred             CCCchhhHHHHHHHHH-hcCHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCHH
Confidence            5999999999999965 55666676654   33588999999999877643332  22223344332     45789999


Q ss_pred             Cchhhhhh
Q 043612          139 NPNLILNS  146 (327)
Q Consensus       139 Ed~lI~~~  146 (327)
                      |+++|...
T Consensus        80 EE~lL~~v   87 (199)
T PF13325_consen   80 EEQLLGTV   87 (199)
T ss_pred             HHHHHHhh
Confidence            99998663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	327
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		7e-21
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		4e-20
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		5e-20
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		1e-19
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		4e-19
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		5e-09
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		1e-08
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		2e-08
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		6e-07
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		1e-06
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		1e-06
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		3e-06
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		4e-06

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 97.8 bits (242), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Query: 14  RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQ 73
           +G W+ EED+K+I  V  YG   W+ + KH    R GK CR RW N+L P++K+ S++ +
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 74  EAALIIELHSILGNRWAQIARHLPGRTDN 102
           E  +I E H +LGNRWA+IA+ LPGRTDN
Sbjct: 66  EDRIIFEAHKVLGNRWAEIAKLLPGRTDN 94

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 14  RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQ 73
           +G W+ EED+++I  V  YG   WS + KH    R GK CR RW N+L P++K+ S++ +
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74  EAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           E  +I + H  LGNRWA+IA+ LPGRTDN  K
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIK 94

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 14  RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQ 73
           +G W+ EED+++I  V  YG   WS + KH    R GK CR RW N+L P++K+ S++ +
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74  EAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           E  +I + H  LGNRWA+IA+ LPGRTDN  K
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIK 94

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Query: 14  RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQ 73
           +G W+ EED+++I +V  YG   WS + KH    R GK CR RW N+L P++K+ S++ +
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 85
Query: 74  EAALIIELHSILGNRWAQIARHLPGRTDN 102
           E  +I + H  LGNRWA+IA+ LPGRTDN
Sbjct: 86  EDRIIYQAHKRLGNRWAEIAKLLPGRTDN 114

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 14  RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQ 73
           +G W+ EED+++I  V  YG   WS + KH    R GK CR RW N+L P++K+ S++ +
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 74  EAALIIELHSILGNRWAQIARHLPGRTDN 102
           E  +I + H  LGNRWA+IA+ LPGRTDN
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDN 145

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 7   CNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLK 66
            N +  K+  ++PEEDE L   V  +G   W  +       R  + CR RW NYL P + 
Sbjct: 4   VNLKAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSIS 61
Query: 67  RGSFSPQEAALIIELHSILGNRWAQIARHLPGRTD 101
              ++ +E AL+++     G +WA IA+  PGRTD
Sbjct: 62  HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTD 96

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 14  RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQ 73
           +G ++  ED+ +  YV   G   W  +       R  K CR RW N+L P + + +++P+
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 74  EAALIIELHSILGNRWAQIARHLPGRTDN 102
           E   I   +  LG++W+ IA+ +PGRTDN
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDN 89

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 17  WSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAA 76
           ++ EED KL   V  YG   W  + +   + R  + CR RW NY+ P L+   +SP+E  
Sbjct: 4   FTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDM 62
Query: 77  LIIELHSILGNRWAQIARHLPGRTDN 102
           L+ + ++  G +W +I++ L  R+DN
Sbjct: 63  LLDQKYAEYGPKWNKISKFLKNRSDN 88

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD 64
          +G W+ EED++LI  V  YG   WS + KH    R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD 64
          +G W+ EED+++I  V  YG   WS + KH    R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD 64
          +G W+ EED+++I  V  YG   WS + KH    R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 65  LKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           +K+ S++ +E  +I + H  LGNRWA+IA+ LPGRTDN  K
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIK 41

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 64  DLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           ++K+ S++ +E  ++ + H  LGNRWA+IA+ LPGRTDN  K
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIK 43

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	327
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	4e-61
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	1e-59
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	3e-19
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	2e-58
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	2e-52
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	1e-50
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	4e-36
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-07
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	4e-49
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	1e-28
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	3e-25
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-07
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	3e-22
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	2e-07
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	3e-17
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	4e-13
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	7e-13
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-11
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-05
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	5e-11
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	2e-10
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	2e-10
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-09
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-09
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	7e-09
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	6e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	2e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-05
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	2e-04
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	3e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  189 bits (482), Expect = 4e-61
 Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)

Query: 11  KVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSF 70
           ++ +G W+ EED+++I  V  YG   WS + KH    R GK CR RW N+L P++K+ S+
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 71  SPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           + +E  +I + H  LGNRWA+IA+ LPGRTDN  K
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIK 94

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  186 bits (475), Expect = 1e-59
 Identities = 44/97 (45%), Positives = 64/97 (65%), Gaps = 1/97 (1%)

Query: 9   KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRG 68
             ++ +G W+ EED+++I +V  YG   WS + KH    R GK CR RW N+L P++K+ 
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKT 80

Query: 69  SFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           S++ +E  +I + H  LGNRWA+IA+ LPGRTDN  K
Sbjct: 81  SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVK 117

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 81.4 bits (202), Expect = 3e-19
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 48  RCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNR-WAQIARHLPGRT 100
           R    C+ RW   L P+L +G ++ +E   +IE     G + W+ IA+HL GR 
Sbjct: 8   RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRI 61

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  183 bits (467), Expect = 2e-58
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 14  RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQ 73
           +G ++  ED+ +  YV   G   W  +       R  K CR RW N+L P + + +++P+
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 74  EAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           E   I   +  LG++W+ IA+ +PGRTDN  K
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIK 92

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  167 bits (426), Expect = 2e-52
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 2/98 (2%)

Query: 8   NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKR 67
           N +  K+  ++PEEDE L   V  +G   W  +       R  + CR RW NYL P +  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISH 62

Query: 68  GSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
             ++ +E AL+++     G +WA IA+  PGRTD   K
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIK 100

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  164 bits (418), Expect = 1e-50
 Identities = 44/95 (46%), Positives = 63/95 (66%), Gaps = 1/95 (1%)

Query: 11  KVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSF 70
           ++ +G W+ EED+++I  V  YG   WS + KH    R GK CR RW N+L P++K+ S+
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113

Query: 71  SPQEAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           + +E  +I + H  LGNRWA+IA+ LPGRTDN  K
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIK 148

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  126 bits (320), Expect = 4e-36
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 12  VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFS 71
           + +  W+ EEDEKL   V   G   W  +  +    R    C+ RW   L P+L +G ++
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWT 62

Query: 72  PQEAALIIELHSILG-NRWAQIARHLPGRTD 101
            +E   +I+L    G  RW+ IA+HL GR  
Sbjct: 63  KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIG 93

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 12  VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQ-RCGKSCRLRWINYLRPDL 65
           VK+  W+ EED  +       G+  W+ + K   L  R   + +  W + +R  +
Sbjct: 108 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL--LPGRTDNAIKNHWNSTMRRKV 159

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  158 bits (403), Expect = 4e-49
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 14  RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQ 73
           +  ++ EED KL   V  YG   W  + +     R  + CR RW NY+ P L+   +SP+
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 74  EAALIIELHSILGNRWAQIARHLPGRTDNEKK 105
           E  L+ + ++  G +W +I++ L  R+DN  +
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIR 91

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  103 bits (260), Expect = 1e-28
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD 64
          + +G W+ EED++LI  V  YG   WS + KH    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 95.4 bits (238), Expect = 3e-25
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 8  NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKR 67
          +    K G+W   EDE L   V  YG   WS +      ++  K C+ RW  +L P +K+
Sbjct: 3  SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKK 61

Query: 68 GSFSPQE 74
            +S   
Sbjct: 62 TEWSGPS 68

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 62  RPDLKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTD 101
               K G +   E  ++       G N+W++IA  L  ++ 
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSA 44

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 86.9 bits (216), Expect = 3e-22
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD 64
          + +  W+ EEDEKL   V   G   W  +  +    R    C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 65  LKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTD 101
           L +  ++ +E   + +L    G + W  IA +LP RTD
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTD 38

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 73.4 bits (181), Expect = 3e-17
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 8  NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLK 66
          +     +  W+ EEDE+L   V  +G   W  +  H    R  + C+ RW+  L     
Sbjct: 2  SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 62  RPDLKRGSFSPQEAALIIELHSILGNR-WAQIARHLPGRTD 101
                +  ++ +E   +  L    G + W  +A H P RTD
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTD 43

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 63.6 bits (154), Expect = 4e-13
 Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 2   GHHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQ---RCGKSCRLRWI 58
           G H   + Q+  R  +S  E E L+  V   G G W  V   A      R     + +W 
Sbjct: 1   GSHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWK 60

Query: 59  NYLR-----PDLKRGSFSPQEAAL-IIELHSILGNRWAQIAR 94
             +      P  +RG   PQE    ++  H     +  Q  +
Sbjct: 61  TLVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQ 102

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 61.5 bits (150), Expect = 7e-13
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQ-RCGKSCRLRWINYLR 62
          KR  W  EED+ L + V  YG G WS +  H     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 56.8 bits (137), Expect = 4e-11
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 8  NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKR 67
          +    K+  WS EE+EKL++         W ++    G  R    C   +   L    +R
Sbjct: 3  SGSSGKKTEWSREEEEKLLHLAKLMPTQ-WRTIAPIIG--RTAAQCLEHYEFLLDKAAQR 59

Query: 68 GS 69
           S
Sbjct: 60 DS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 65  LKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTD 101
            K+  +S +E   ++ L  ++  +W  IA  + GRT 
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTIA-PIIGRTA 42

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 57.3 bits (138), Expect = 5e-11
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 17 WSPEEDEKLINYVTTYGHGCWSSVPKHA---GLQRCGKSCRLRWINYLR-----PDLKRG 68
          +S  E E L+  V   G G W  V   A      R     + +W   +      P  +RG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 69 SFSPQEAAL-IIELHSILGNR 88
             PQ+    ++  H+    +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 57.1 bits (137), Expect = 2e-10
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 9/91 (9%)

Query: 9   KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQ---RCGKSCRLRWINYLR--- 62
            Q+  R  +S  E E L+  V   G G W  V   A      R     + +W   +    
Sbjct: 12  SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71

Query: 63  --PDLKRGSFSPQEAAL-IIELHSILGNRWA 90
             P  +RG   PQ+    ++  H+    +  
Sbjct: 72  IAPQQRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 57.1 bits (137), Expect = 2e-10
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 9   KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSV---PKHAGLQRCGKSCRLRWINYLR--- 62
            Q+  R  ++  E E L+  V   G G W  V          R     + +W   +    
Sbjct: 26  GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85

Query: 63  --PDLKRGSFSPQEAAL-IIELHSILGNRWA 90
             P  +RG+  PQE    ++   +      +
Sbjct: 86  IAPQQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 8  NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQ-RCGKSCRLRWINYLRPDL 65
               K+  W+ EE E +   V  YG G W+++ K+     R     + RW    R  +
Sbjct: 5  TTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQ-RCGKSCRLRWINYLRPDL 65
          K+  W+ EE E +   V  YG G W+++ K+     R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 50.9 bits (122), Expect = 7e-09
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 9  KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQ-RCGKSCRLRWINYLRPDL 65
           +  KR  W  EED+ L + V  YG G WS +  H     R     + RW    +  L
Sbjct: 5  HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 47.7 bits (114), Expect = 6e-08
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL 61
              W+ +E+  L+  V   G G W  V       +  + C   ++ Y 
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 54/335 (16%), Positives = 92/335 (27%), Gaps = 118/335 (35%)

Query: 22  DEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRL--RWINYLRPDLKRGSFSPQEAALII 79
            +++ ++++       S       L    +   L  ++++    DL      P+E     
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDL------PREVLTTN 326

Query: 80  ELH-SILGNRWAQIARHLPGRTDNEKKLMS---HEIV--------PA--------LASFP 119
               SI+      I R      DN K +       I+        PA        L+ FP
Sbjct: 327 PRRLSIIA---ESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 120 ADFH---NSLC-------PEEVGFF-------SL---NTNPNLI-LNSHQQDHQFHLPSP 158
              H     L          +V          SL       + I + S   + +  L + 
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 159 PPMFHNNFDQAEFKLNLSNYNVA----SIHFPPPPTIIPSSSTSSSSLD----WSLPHHL 210
             + H +         + +YN+     S    PP             LD      + HHL
Sbjct: 443 YAL-HRSI--------VDHYNIPKTFDSDDLIPPY------------LDQYFYSHIGHHL 481

Query: 211 Q-----------PQVHLDPNPLENQIFSHIEPVAPP----------HYYDDIIGDHDNK- 248
           +             V LD   LE +I                     +Y   I D+D K 
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 249 ----------LNTTDPSIVTMPYD---QNPLMVPT 270
                     L   + +++   Y    +  LM   
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 44/326 (13%), Positives = 81/326 (24%), Gaps = 108/326 (33%)

Query: 8   NKQKVKRGLWSPEEDEKLIN---------YVTTYGHGCWSSVPKHAGLQRCGKSC----- 53
           N+   K  +   +   KL            V   G           G    GK+      
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---------G---SGKTWVALDV 170

Query: 54  ------------RLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTD 101
                       ++ W+N    +             ++E   +L     QI  +   R+D
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCN---------SPETVLE---MLQKLLYQIDPNWTSRSD 218

Query: 102 NEK--KLMSHEIVPALASF--PADFHNSLC-------PEEVGFFSLN------TNPNLIL 144
           +    KL  H I   L        + N L         +    F+L+      T    + 
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 145 NSHQQDHQFHLPSPPPMFHNNFDQAEFKLNLSNY-NVASIHFPPPPTIIPSSSTSSSSLD 203
           +        H+              E K  L  Y +         P  +P    +++   
Sbjct: 279 DFLSAATTTHISLDH--HSMTLTPDEVKSLLLKYLDC-------RPQDLPREVLTTNPRR 329

Query: 204 WSL--------PHHLQPQVHLDPNPLENQIFSHIEPVAPP---HYYDDIIGDHDNKLNTT 252
            S+                H++ + L   I S +  + P      +D +           
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL----------- 378

Query: 253 DPSIVTMPYDQNPLMVPTMPKLCEIL 278
             S+   P             L  ++
Sbjct: 379 --SV--FPPS-----AHIPTILLSLI 395

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 17 WSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
          W  +E+  LI+   T G G W+ +  + G  R  + CR  ++  
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRG 68
            G ++PEE EKL      +G   W+++    G  R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 27/173 (15%), Positives = 53/173 (30%), Gaps = 13/173 (7%)

Query: 13  KRGLWSPEEDEKLINYV-----TTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKR 67
            +  ++ EEDE +++ V         H  +  +  +      G S R R+  YL   L+ 
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEY 65

Query: 68  GSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEK-KLMSHEIVPALASFPADFHNSL 126
                +   L+ +     GN      + LP     +      + +  A+          +
Sbjct: 66  VYEVDKFGKLVRDDD---GNLIK--TKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQI 120

Query: 127 CPEE-VGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLNLSNY 178
            P+      +    P  I   +      H+P   P F     Q+        +
Sbjct: 121 DPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREF 173

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 9  KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
          K       W+ +E   L+  +  Y    W+ V +H G  R    C L ++  
Sbjct: 13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	100.0
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.97
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.93
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.81
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.76
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.75
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.73
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.72
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.71
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.7
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.7
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.65
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.63
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.61
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.61
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.59
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.59
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.58
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.57
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.57
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.56
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.55
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.54
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.52
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.51
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.51
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.48
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.47
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.47
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.46
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.46
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.45
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.45
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.45
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.42
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.4
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.39
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.09
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.36
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.32
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.32
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.31
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.3
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.26
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.26
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.18
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.17
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.79
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.16
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.13
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.12
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.86
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.85
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.8
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.74
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.69
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.68
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.54
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.52
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.45
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.38
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.36
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.24
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.23
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.43
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.11
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.08
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.92
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.88
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.86
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.84
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.71
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.62
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.41
2crg_A	70	Metastasis associated protein MTA3; transcription	97.38
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.17
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.16
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.13
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.9
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.9
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.83
2crg_A	70	Metastasis associated protein MTA3; transcription	96.7
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.32
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.25
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.02
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	93.84
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	93.51
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.12
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	89.86
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	88.92
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	87.88
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	84.95

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=100.00  E-value=1.9e-35  Score=257.10  Aligned_cols=146  Identities=26%  Similarity=0.444  Sum_probs=95.6

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCC-CHH
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGN-RWA   90 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~-kW~   90 (327)
                      +++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~   82 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS   82 (159)
T ss_dssp             ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence            6789999999999999999999889999999999 99999999999999999999999999999999999999995 699


Q ss_pred             HHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchhhhhhhhccCCCCCCCCCCCCCCCCCHHH
Q 043612           91 QIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFDQAE  170 (327)
Q Consensus        91 ~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~lI~~~~~~~g~~~~~~pa~~lp~~~~~~~  170 (327)
                      .||..|+|||+.|||+||.              ++|+|.+.+.+||.+||.+|+.++.++|..|..+ +..+|| ++.+.
T Consensus        83 ~Ia~~l~~Rt~~qcr~Rw~--------------~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~I-a~~l~g-Rt~~~  146 (159)
T 1h89_C           83 VIAKHLKGRIGKQCRERWH--------------NHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI-AKLLPG-RTDNA  146 (159)
T ss_dssp             HHHHTSTTCCHHHHHHHHH--------------HTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHH-HTTSTT-CCHHH
T ss_pred             HHHHHcCCCCHHHHHHHHH--------------HHhCccccccCCChHHHHHHHHHHHHHCCCHHHH-HHHCCC-CCHHH
Confidence            9999999999999996664              5678889999999999999999999999866555 788999 55556


Q ss_pred             Hhhh
Q 043612          171 FKLN  174 (327)
Q Consensus       171 i~n~  174 (327)
                      ++|.
T Consensus       147 ~knr  150 (159)
T 1h89_C          147 IKNH  150 (159)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6664

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.97  E-value=3.5e-32  Score=221.29  Aligned_cols=102  Identities=43%  Similarity=0.797  Sum_probs=98.5

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHH
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQ   91 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~   91 (327)
                      +++|+||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+.
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            6799999999999999999999888999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCHHHHHhhhhhhccc
Q 043612           92 IARHLPGRTDNEKKLMSHEIVPA  114 (327)
Q Consensus        92 IA~~lpgRT~~qcK~Rw~~ilr~  114 (327)
                      ||+.|||||++|||+||+.+++.
T Consensus        81 Ia~~l~gRt~~~~k~rw~~~~~~  103 (105)
T 1gv2_A           81 IAKLLPGRTDNAIKNHWNSTMRR  103 (105)
T ss_dssp             HHTTCTTCCHHHHHHHHHHHTC-
T ss_pred             HHHHcCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999998765

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.97  E-value=2.2e-32  Score=223.99  Aligned_cols=103  Identities=30%  Similarity=0.522  Sum_probs=99.5

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHH
Q 043612           14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIA   93 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA   93 (327)
                      ||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||.+|+.||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHhhhhhhcccccC
Q 043612           94 RHLPGRTDNEKKLMSHEIVPALAS  117 (327)
Q Consensus        94 ~~lpgRT~~qcK~Rw~~ilr~~k~  117 (327)
                      +.|+|||++|||+||..+++.+.+
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~  103 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAK  103 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHH
Confidence            999999999999999999887544

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=4.3e-32  Score=228.43  Aligned_cols=108  Identities=33%  Similarity=0.568  Sum_probs=102.6

Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhC
Q 043612            7 CNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILG   86 (327)
Q Consensus         7 ~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G   86 (327)
                      .+++..++|+||+|||++|+++|.+||. +|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus         4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G   81 (126)
T 3osg_A            4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG   81 (126)
T ss_dssp             BC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence            3577899999999999999999999997 8999999999 9999999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhCCCCCHHHHHhhhhhhccccc
Q 043612           87 NRWAQIARHLPGRTDNEKKLMSHEIVPALA  116 (327)
Q Consensus        87 ~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k  116 (327)
                      .+|+.||+.|+|||+.|||+||..+++.+.
T Consensus        82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~  111 (126)
T 3osg_A           82 RQWAIIAKFFPGRTDIHIKNRWVTISNKLG  111 (126)
T ss_dssp             SCHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999988753

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=1.3e-31  Score=226.65  Aligned_cols=114  Identities=30%  Similarity=0.556  Sum_probs=103.4

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHH
Q 043612           14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIA   93 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA   93 (327)
                      ||+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||.|||++|+++|.+||++|+.||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            79999999999999999999889999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHhhhhhhcccccCCCccccCCCCc
Q 043612           94 RHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCP  128 (327)
Q Consensus        94 ~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P  128 (327)
                      +.|+|||++|||+||..+++........-...+.|
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p  115 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP  115 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc
Confidence            99999999999999999887755443333333334

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=2.3e-31  Score=223.96  Aligned_cols=106  Identities=42%  Similarity=0.771  Sum_probs=101.4

Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 043612            8 NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGN   87 (327)
Q Consensus         8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~   87 (327)
                      .++.+++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||.
T Consensus        21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~   99 (128)
T 1h8a_C           21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN   99 (128)
T ss_dssp             -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            34678999999999999999999999888999999999 99999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612           88 RWAQIARHLPGRTDNEKKLMSHEIVPA  114 (327)
Q Consensus        88 kW~~IA~~lpgRT~~qcK~Rw~~ilr~  114 (327)
                      +|+.||+.|||||++|||+||..+++.
T Consensus       100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~  126 (128)
T 1h8a_C          100 RWAEIAKLLPGRTDNAVKNHWNSTMRR  126 (128)
T ss_dssp             CHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999998765

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=3.9e-29  Score=217.34  Aligned_cols=106  Identities=42%  Similarity=0.763  Sum_probs=101.9

Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 043612            8 NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGN   87 (327)
Q Consensus         8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~   87 (327)
                      ..+.+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|.+++++||+|||++|++++.+||+
T Consensus        52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~  130 (159)
T 1h89_C           52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN  130 (159)
T ss_dssp             TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence            35778899999999999999999999878999999999 99999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612           88 RWAQIARHLPGRTDNEKKLMSHEIVPA  114 (327)
Q Consensus        88 kW~~IA~~lpgRT~~qcK~Rw~~ilr~  114 (327)
                      +|+.||+.|||||+++||+||+.+++.
T Consensus       131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~  157 (159)
T 1h89_C          131 RWAEIAKLLPGRTDNAIKNHWNSTMRR  157 (159)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred             CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999998765

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.93  E-value=3.3e-27  Score=198.60  Aligned_cols=118  Identities=24%  Similarity=0.390  Sum_probs=85.5

Q ss_pred             cccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612           40 VPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGN-RWAQIARHLPGRTDNEKKLMSHEIVPALASF  118 (327)
Q Consensus        40 IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~-kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~  118 (327)
                      ||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||          
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw----------   69 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERW----------   69 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHH----------
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHH----------
Confidence            788998 99999999999999999999999999999999999999995 699999999999999999555          


Q ss_pred             CccccCCCCccccCCCCCCCCchhhhhhhhccCCCCCCCCCCCCCCCCCHHHHhhh
Q 043612          119 PADFHNSLCPEEVGFFSLNTNPNLILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLN  174 (327)
Q Consensus       119 ~~r~~N~L~P~i~~~~wt~eEd~lI~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~  174 (327)
                          .++|+|.+.+.+||.+||.+|+.++.++|..|..+ +..+|| ++.++++|.
T Consensus        70 ----~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~I-a~~l~g-Rt~~~~k~r  119 (128)
T 1h8a_C           70 ----HNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI-AKLLPG-RTDNAVKNH  119 (128)
T ss_dssp             ----HHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHH-GGGSTT-CCHHHHHHH
T ss_pred             ----HHhcccccccccCCHHHHHHHHHHHHHHCcCHHHH-HHHCCC-CCHHHHHHH
Confidence                45778999999999999999999999999865554 788999 555566654

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=2.1e-21  Score=147.67  Aligned_cols=68  Identities=29%  Similarity=0.638  Sum_probs=65.0

Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHHHH
Q 043612            7 CNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEA   75 (327)
Q Consensus         7 ~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED   75 (327)
                      +..+.+++++||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||
T Consensus         2 ss~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            2 SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            356789999999999999999999999888999999999 99999999999999999999999999998

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.76  E-value=1.2e-19  Score=147.29  Aligned_cols=95  Identities=23%  Similarity=0.341  Sum_probs=82.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchh
Q 043612           64 DLKRGSFSPQEAALIIELHSILGN-RWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNL  142 (327)
Q Consensus        64 ~lkkg~WT~EED~~Ll~lV~~~G~-kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~l  142 (327)
                      ++++++||+|||++|+++|.+||. +|..||..|+|||+.||+.||              .+.|+|.+.+.+||.+||.+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw--------------~~~l~p~~~~~~Wt~eEd~~   66 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERW--------------HNHLNPEVKKTSWTEEEDRI   66 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHH--------------HHTTCCCCCCCCCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHH--------------HhccCCcccccCCCHHHHHH
Confidence            368999999999999999999996 799999999999999999555              45678999999999999999


Q ss_pred             hhhhhhccCCCCCCCCCCCCCCCCCHHHHhhh
Q 043612          143 ILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLN  174 (327)
Q Consensus       143 I~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~  174 (327)
                      |+.++.++|..|..+ +..+|| ++.+.++|.
T Consensus        67 L~~~~~~~G~~W~~I-a~~l~g-Rt~~~~k~r   96 (105)
T 1gv2_A           67 IYQAHKRLGNRWAEI-AKLLPG-RTDNAIKNH   96 (105)
T ss_dssp             HHHHHHHHSSCHHHH-HTTCTT-CCHHHHHHH
T ss_pred             HHHHHHHhCCCHHHH-HHHcCC-CCHHHHHHH
Confidence            999999999765544 889999 555566553

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.75  E-value=1.9e-19  Score=151.15  Aligned_cols=97  Identities=18%  Similarity=0.242  Sum_probs=83.4

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCch
Q 043612           62 RPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPN  141 (327)
Q Consensus        62 ~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~  141 (327)
                      .+..++++||+|||++|+++|.+||.+|..||+.|+|||+.||+              +||.++|+|.+.+.+||.+||.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr--------------~Rw~~~l~p~~~~~~WT~eEd~   71 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCR--------------DRWKNYLAPSISHTPWTAEEDA   71 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHH--------------HHHHHHTSTTSCCSCCCHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHH--------------HHHhhhcccccccccCCHHHHH
Confidence            45678999999999999999999999999999999999999999              4555677899999999999999


Q ss_pred             hhhhhhhccCCCCCCCCCCCCCCCCCHHHHhhh
Q 043612          142 LILNSHQQDHQFHLPSPPPMFHNNFDQAEFKLN  174 (327)
Q Consensus       142 lI~~~~~~~g~~~~~~pa~~lp~~~~~~~i~n~  174 (327)
                      +|+.++..+|..|..+ +..+|| ++...++|.
T Consensus        72 ~L~~~v~~~G~~W~~I-a~~l~g-Rt~~~~k~r  102 (126)
T 3osg_A           72 LLVQKIQEYGRQWAII-AKFFPG-RTDIHIKNR  102 (126)
T ss_dssp             HHHHHHHHHCSCHHHH-HTTSTT-CCHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHH-HHHcCC-CCHHHHHHH
Confidence            9999999999765554 789999 455555543

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.73  E-value=3.7e-19  Score=145.40  Aligned_cols=91  Identities=12%  Similarity=0.111  Sum_probs=79.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchhhhh
Q 043612           67 RGSFSPQEAALIIELHSILGN-RWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILN  145 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G~-kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~lI~~  145 (327)
                      |++||+|||++|+++|.+||. +|..||..|+|||+.||+              +||.++|+|.+.+.+||.+||.+|+.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr--------------~Rw~~~L~p~i~~~~WT~eEd~~L~~   66 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCR--------------ERWNNYINPALRTDPWSPEEDMLLDQ   66 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHH--------------HHHHHHSSSCCTTCCCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHH--------------HHHHHHHcccccccccCHHHHHHHHH
Confidence            689999999999999999995 899999999999999999              55556788999999999999999999


Q ss_pred             hhhccCCCCCCCCCCCCCCCCCHHHHhh
Q 043612          146 SHQQDHQFHLPSPPPMFHNNFDQAEFKL  173 (327)
Q Consensus       146 ~~~~~g~~~~~~pa~~lp~~~~~~~i~n  173 (327)
                      ++..+|..|..+ +..+|| ++.+.++|
T Consensus        67 ~~~~~G~~W~~I-a~~l~g-Rt~~~~k~   92 (107)
T 2k9n_A           67 KYAEYGPKWNKI-SKFLKN-RSDNNIRN   92 (107)
T ss_dssp             HHHHTCSCHHHH-HHHHSS-SCHHHHHH
T ss_pred             HHHHhCcCHHHH-HHHCCC-CCHHHHHH
Confidence            999999865544 788999 55555555

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.72  E-value=7.7e-19  Score=148.28  Aligned_cols=92  Identities=20%  Similarity=0.256  Sum_probs=80.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCchhhhh
Q 043612           67 RGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNPNLILN  145 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd~lI~~  145 (327)
                      ||+||+|||++|+++|.+|| .+|..||..|+|||+.||+              +||.++|+|.+.+++||.+||.+|+.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr--------------~Rw~~~l~p~~~~~~Wt~eEd~~L~~   67 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCR--------------ERWFNHLDPAVVKHAWTPEEDETIFR   67 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHH--------------HHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHH--------------HHHhhccCccccCCCCCHHHHHHHHH
Confidence            78999999999999999999 6899999999999999999              55667788999999999999999999


Q ss_pred             hhhccCCCCCCCCCCCCCCCCCHHHHhhh
Q 043612          146 SHQQDHQFHLPSPPPMFHNNFDQAEFKLN  174 (327)
Q Consensus       146 ~~~~~g~~~~~~pa~~lp~~~~~~~i~n~  174 (327)
                      ++..+|..|..+ +..+||++ .+.++|.
T Consensus        68 ~~~~~G~~W~~I-a~~l~gRt-~~~~k~r   94 (131)
T 3zqc_A           68 NYLKLGSKWSVI-AKLIPGRT-DNAIKNR   94 (131)
T ss_dssp             HHHHSCSCHHHH-TTTSTTCC-HHHHHHH
T ss_pred             HHHHHCcCHHHH-HHHcCCCC-HHHHHHH
Confidence            999999876555 78999955 4455543

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.1e-17  Score=127.02  Aligned_cols=65  Identities=20%  Similarity=0.218  Sum_probs=60.8

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCc
Q 043612           62 RPDLKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNP  140 (327)
Q Consensus        62 ~p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd  140 (327)
                      .+.+++++||+|||++|+++|.+|| ++|..||..|+|||+.|||              .||.++|+|.+++.+||.+||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr--------------~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCK--------------ARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHH--------------HHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHH--------------HHHHHHcCCcccCCCCChHhc
Confidence            4678999999999999999999999 7999999999999999999              666788999999999999997

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.70  E-value=1.1e-17  Score=129.11  Aligned_cols=61  Identities=23%  Similarity=0.323  Sum_probs=49.6

Q ss_pred             cccceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612           54 RLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPAL  115 (327)
Q Consensus        54 r~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~  115 (327)
                      --||.++|+|.+++++||+|||++|+++|++||++|++||+.| |||++|||+||+.|.+..
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~~~   70 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKDTC   70 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSCCC
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHHHc
Confidence            3589999999999999999999999999999999999999999 999999999999876653

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.70  E-value=5.9e-18  Score=156.21  Aligned_cols=106  Identities=19%  Similarity=0.252  Sum_probs=92.5

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHhCCCC-----ccccccccccccccccccccceecccCCCC-----------------
Q 043612            9 KQKVKRGLWSPEEDEKLINYVTTYGHGC-----WSSVPKHAGLQRCGKSCRLRWINYLRPDLK-----------------   66 (327)
Q Consensus         9 K~k~kkg~WT~EEDe~L~~lV~kyg~~n-----W~~IA~~l~~gRt~~QCr~Rw~~~L~p~lk-----------------   66 (327)
                      .+.+++++||+|||++|+++|+++|..+     |..||+.|+ |||+.|||.||..+|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            4567899999999999999999998643     999999999 99999999999999999886                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHHH-h------------------------------------------------
Q 043612           67 ------------RGSFSPQEAALIIELHSI-L------------------------------------------------   85 (327)
Q Consensus        67 ------------kg~WT~EED~~Ll~lV~~-~------------------------------------------------   85 (327)
                                  |..||.|||-.|...+.+ |                                                
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        889999999999998877 1                                                


Q ss_pred             -----C----CCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612           86 -----G----NRWAQIARHLPGRTDNEKKLMSHEIVPAL  115 (327)
Q Consensus        86 -----G----~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~  115 (327)
                           |    ..|.+||+.+|+||..++|+||+.+++..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                 1    15999999999999999999999988764

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.65  E-value=1.4e-17  Score=139.95  Aligned_cols=82  Identities=22%  Similarity=0.378  Sum_probs=77.1

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccccccccccceeccc-----CCCCCC-CCCHHHHHHH
Q 043612            9 KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHA----GLQRCGKSCRLRWINYLR-----PDLKRG-SFSPQEAALI   78 (327)
Q Consensus         9 K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l----~~gRt~~QCr~Rw~~~L~-----p~lkkg-~WT~EED~~L   78 (327)
                      +++.++++||.|||+.|+++|++||.++|..|++.+    + +||..||++||.++++     |.++++ +|++||+.+|
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            467889999999999999999999998999999985    5 9999999999999998     999999 9999999999


Q ss_pred             HHHHHHhCCCHHH
Q 043612           79 IELHSILGNRWAQ   91 (327)
Q Consensus        79 l~lV~~~G~kW~~   91 (327)
                      ++++..+|++|++
T Consensus        91 ~~~h~~~gn~~~~  103 (121)
T 2juh_A           91 LAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHccchhc
Confidence            9999999999976

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.63  E-value=9.3e-17  Score=135.11  Aligned_cols=79  Identities=24%  Similarity=0.368  Sum_probs=73.0

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccccccccccceecc-----cCCCCCCCCCHHH-HHHH
Q 043612            9 KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHA----GLQRCGKSCRLRWINYL-----RPDLKRGSFSPQE-AALI   78 (327)
Q Consensus         9 K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l----~~gRt~~QCr~Rw~~~L-----~p~lkkg~WT~EE-D~~L   78 (327)
                      +.+.++++||.|||+.|+++|++||.++|..|++.+    . +||..||++||.+++     +|.++++.|+++| +++|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            456789999999999999999999998999999964    5 899999999999999     8999999999999 8999


Q ss_pred             HHHHHHhCCC
Q 043612           79 IELHSILGNR   88 (327)
Q Consensus        79 l~lV~~~G~k   88 (327)
                      ++++..+|++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999964

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=1.2e-16  Score=117.80  Aligned_cols=57  Identities=26%  Similarity=0.557  Sum_probs=53.8

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCC
Q 043612            9 KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLK   66 (327)
Q Consensus         9 K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lk   66 (327)
                      .+.+++++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            4678999999999999999999999878999999999 99999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.61  E-value=1.1e-16  Score=114.86  Aligned_cols=52  Identities=46%  Similarity=0.929  Sum_probs=49.4

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCC
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD   64 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~   64 (327)
                      +++++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999888999999999 999999999999999984

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.59  E-value=1.4e-16  Score=114.13  Aligned_cols=52  Identities=31%  Similarity=0.640  Sum_probs=48.2

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCC
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD   64 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~   64 (327)
                      +++++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999878999999999 999999999999999984

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.59  E-value=2.9e-16  Score=119.02  Aligned_cols=63  Identities=29%  Similarity=0.439  Sum_probs=58.2

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccccc-ccccccccccceecccCCCCCCCCC
Q 043612            9 KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGL-QRCGKSCRLRWINYLRPDLKRGSFS   71 (327)
Q Consensus         9 K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~-gRt~~QCr~Rw~~~L~p~lkkg~WT   71 (327)
                      +++.++++||+|||++|+++|.+||.++|..||+.|+. +|++.||++||.++|++.+.++..+
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            56788999999999999999999998889999999976 8999999999999999999987653

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1e-15  Score=114.96  Aligned_cols=55  Identities=18%  Similarity=0.256  Sum_probs=51.9

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612           60 YLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPAL  115 (327)
Q Consensus        60 ~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~  115 (327)
                      +|+|.+++++||.|||++|+++|+++|.+|.+||+ ++|||++|||+||..+++..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~   56 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKA   56 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChH
Confidence            68999999999999999999999999999999999 88999999999999887654

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=2.4e-15  Score=110.81  Aligned_cols=51  Identities=20%  Similarity=0.363  Sum_probs=46.1

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhc
Q 043612           62 RPDLKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIV  112 (327)
Q Consensus        62 ~p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~il  112 (327)
                      +|.+++++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||..++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l   54 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL   54 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence            5678999999999999999999999 69999999999999999996666543

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.57  E-value=2.9e-15  Score=107.20  Aligned_cols=49  Identities=24%  Similarity=0.381  Sum_probs=44.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHhhhhhhcc
Q 043612           65 LKRGSFSPQEAALIIELHSILGN-RWAQIARHLPGRTDNEKKLMSHEIVP  113 (327)
Q Consensus        65 lkkg~WT~EED~~Ll~lV~~~G~-kW~~IA~~lpgRT~~qcK~Rw~~ilr  113 (327)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||..++.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999997 89999999999999999988887654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.56  E-value=3e-15  Score=114.38  Aligned_cols=57  Identities=16%  Similarity=0.187  Sum_probs=53.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612           61 LRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALAS  117 (327)
Q Consensus        61 L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~  117 (327)
                      .+|.+++++||+|||++|+++|.+||.+|..||+.|+|||++|||+||..+++....
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~   59 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK   59 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence            578899999999999999999999999999999999999999999999998877543

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.55  E-value=5.4e-15  Score=105.91  Aligned_cols=48  Identities=31%  Similarity=0.566  Sum_probs=43.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHhhhhhhc
Q 043612           65 LKRGSFSPQEAALIIELHSILGN-RWAQIARHLPGRTDNEKKLMSHEIV  112 (327)
Q Consensus        65 lkkg~WT~EED~~Ll~lV~~~G~-kW~~IA~~lpgRT~~qcK~Rw~~il  112 (327)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||..++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L   49 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL   49 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence            47899999999999999999996 6999999999999999997776554

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.54  E-value=8.3e-15  Score=105.54  Aligned_cols=49  Identities=20%  Similarity=0.163  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHhhhhhhccc
Q 043612           66 KRGSFSPQEAALIIELHSILG-NRWAQIARHLP--GRTDNEKKLMSHEIVPA  114 (327)
Q Consensus        66 kkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lp--gRT~~qcK~Rw~~ilr~  114 (327)
                      ++++||+|||++|+++|.+|| ++|+.||..|+  |||+.|||+||..+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 69999999999  99999999999998764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.52  E-value=1.3e-14  Score=107.25  Aligned_cols=52  Identities=17%  Similarity=0.235  Sum_probs=47.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612           63 PDLKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIVPA  114 (327)
Q Consensus        63 p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~ilr~  114 (327)
                      +.+.+++||+|||++|+++|++|| ++|.+||+.|+|||+.|||+||..++..
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            567899999999999999999999 7999999999999999999999876543

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.51  E-value=1.8e-15  Score=113.66  Aligned_cols=56  Identities=27%  Similarity=0.502  Sum_probs=49.0

Q ss_pred             CCcccCCCHHHHHHHHHHHHHhCCCCcccccccccc-ccccccccccceecccCCCC
Q 043612           11 KVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGL-QRCGKSCRLRWINYLRPDLK   66 (327)
Q Consensus        11 k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~-gRt~~QCr~Rw~~~L~p~lk   66 (327)
                      ..+|++||+|||++|+++|.+||.++|..||+.++. +||+.||++||.++++++++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            356889999999999999999999899999997542 89999999999999988763

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.51  E-value=2.4e-15  Score=111.18  Aligned_cols=55  Identities=18%  Similarity=0.482  Sum_probs=51.3

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCC
Q 043612            9 KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD   64 (327)
Q Consensus         9 K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~   64 (327)
                      .+.+.+++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            3578899999999999999999999888999999999 999999999999998764

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.48  E-value=4.3e-14  Score=106.19  Aligned_cols=50  Identities=20%  Similarity=0.269  Sum_probs=45.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHhhhhhhccc
Q 043612           65 LKRGSFSPQEAALIIELHSILG-NRWAQIARHLP--GRTDNEKKLMSHEIVPA  114 (327)
Q Consensus        65 lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lp--gRT~~qcK~Rw~~ilr~  114 (327)
                      .+|++||+|||++|+++|++|| ++|.+||+.++  |||+.|||+||+.+++.
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~   61 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL   61 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhcc
Confidence            4789999999999999999999 58999999865  99999999999988764

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.47  E-value=5.1e-14  Score=103.49  Aligned_cols=50  Identities=24%  Similarity=0.316  Sum_probs=45.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC-CCCHHHHHhhhhhhc
Q 043612           63 PDLKRGSFSPQEAALIIELHSILG-NRWAQIARHLP-GRTDNEKKLMSHEIV  112 (327)
Q Consensus        63 p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lp-gRT~~qcK~Rw~~il  112 (327)
                      ..+.+++||+|||++|+++|++|| ++|.+||+.|+ |||+.|||.||..+.
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            356788999999999999999999 89999999999 999999999998753

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.47  E-value=2.9e-14  Score=107.97  Aligned_cols=54  Identities=19%  Similarity=0.118  Sum_probs=48.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHhhhhhhccc
Q 043612           61 LRPDLKRGSFSPQEAALIIELHSILG-NRWAQIARHLP--GRTDNEKKLMSHEIVPA  114 (327)
Q Consensus        61 L~p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lp--gRT~~qcK~Rw~~ilr~  114 (327)
                      ..+..++++||+|||++|+++|.+|| ++|..||..|+  |||+.|||+||..+++.
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p   60 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   60 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence            45667899999999999999999999 69999999999  99999999888776554

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=5.9e-15  Score=113.28  Aligned_cols=61  Identities=23%  Similarity=0.383  Sum_probs=55.9

Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHHhCC-----CCccccccccccccccccccccceecccCCCCCCC
Q 043612            8 NKQKVKRGLWSPEEDEKLINYVTTYGH-----GCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGS   69 (327)
Q Consensus         8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~-----~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~   69 (327)
                      .++.+.++.||+|||++|+++|.+||.     .+|..||+.|+ +||+.||+.||+++|.+.++.|.
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            468889999999999999999999996     67999999999 99999999999999998777664

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.46  E-value=1.2e-14  Score=106.95  Aligned_cols=52  Identities=23%  Similarity=0.466  Sum_probs=47.4

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecc
Q 043612           10 QKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL   61 (327)
Q Consensus        10 ~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L   61 (327)
                      ..+.+++||+|||++|+++|++||.++|..||+.|+.+||+.||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3466889999999999999999998899999999987899999999998765

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.45  E-value=9.9e-15  Score=105.13  Aligned_cols=50  Identities=34%  Similarity=0.566  Sum_probs=46.5

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCcccccccccc-ccccccccccceeccc
Q 043612           13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGL-QRCGKSCRLRWINYLR   62 (327)
Q Consensus        13 kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~-gRt~~QCr~Rw~~~L~   62 (327)
                      ++++||+|||++|+++|.+||.++|..||+.|+. +||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998899999999976 6999999999998875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=5.8e-14  Score=107.72  Aligned_cols=55  Identities=18%  Similarity=0.204  Sum_probs=49.8

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC------CCHHHHHhhCCCCCHHHHHhhhhhhccccc
Q 043612           62 RPDLKRGSFSPQEAALIIELHSILG------NRWAQIARHLPGRTDNEKKLMSHEIVPALA  116 (327)
Q Consensus        62 ~p~lkkg~WT~EED~~Ll~lV~~~G------~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k  116 (327)
                      +|.+.+++||+|||++|+++|.+||      .+|.+||+.|+|||+.|||+||..++..+.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            4778899999999999999999999      689999999999999999999977666543

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=4.7e-15  Score=111.28  Aligned_cols=58  Identities=22%  Similarity=0.365  Sum_probs=53.1

Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCC
Q 043612            8 NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRG   68 (327)
Q Consensus         8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg   68 (327)
                      ..|.+++++||+|||++|+++++.||. +|..||+ ++ |||+.||+.||.++|++.++++
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence            468899999999999999999999997 7999999 77 8999999999999999877654

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.42  E-value=1.1e-13  Score=116.47  Aligned_cols=82  Identities=20%  Similarity=0.199  Sum_probs=69.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC----CCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCC
Q 043612           64 DLKRGSFSPQEAALIIELHSILGN-RWAQIARHL----PGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNT  138 (327)
Q Consensus        64 ~lkkg~WT~EED~~Ll~lV~~~G~-kW~~IA~~l----pgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~e  138 (327)
                      ..++++||.|||+.|+++|++||. +|+.|++.+    +|||+.+||+||+.+++..         .++|.+.+..|+++
T Consensus        28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~---------~~~p~~kr~~~~p~   98 (122)
T 2roh_A           28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA---------SIAPQQRRGAPVPQ   98 (122)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH---------HSCTTTCCCSSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc---------cCCccccCCCCCCH
Confidence            457889999999999999999995 999999973    8999999999999988753         35667777888888


Q ss_pred             C-chhhhhhhhccCCCC
Q 043612          139 N-PNLILNSHQQDHQFH  154 (327)
Q Consensus       139 E-d~lI~~~~~~~g~~~  154 (327)
                      | +..|+.+|..+|+..
T Consensus        99 e~~~~v~~~h~~~g~~~  115 (122)
T 2roh_A           99 ELLDRVLAAQAYWSVDS  115 (122)
T ss_dssp             HHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHhhHH
Confidence            8 678889998777654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.40  E-value=3e-14  Score=108.84  Aligned_cols=59  Identities=19%  Similarity=0.307  Sum_probs=53.9

Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCC
Q 043612            7 CNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKR   67 (327)
Q Consensus         7 ~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkk   67 (327)
                      +..+.+++++||+|||++|+++|.+||. +|..||+.|+ +||+.||+.||.++|.+.++.
T Consensus         2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            3467899999999999999999999997 7999999999 999999999999998876655

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.39  E-value=1.2e-13  Score=116.00  Aligned_cols=87  Identities=21%  Similarity=0.180  Sum_probs=70.9

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCC-C
Q 043612           61 LRPDLKRGSFSPQEAALIIELHSILGN-RWAQIARH----LPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGF-F  134 (327)
Q Consensus        61 L~p~lkkg~WT~EED~~Ll~lV~~~G~-kW~~IA~~----lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~-~  134 (327)
                      +.+..++++||.|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+.+++...         +.|.+.+. +
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~---------~~p~~krg~~   81 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS---------IAPQQRRGEP   81 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH---------TCSTTCCCSC
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc---------cCCcccCCCC
Confidence            455678899999999999999999996 99999998    489999999999999987532         33455555 6


Q ss_pred             CCCCCchhhhhhhhccCCCCCC
Q 043612          135 SLNTNPNLILNSHQQDHQFHLP  156 (327)
Q Consensus       135 wt~eEd~lI~~~~~~~g~~~~~  156 (327)
                      |.++++..|+.+|..+|+.+..
T Consensus        82 ~p~e~~~rv~~~h~~~gn~~~~  103 (121)
T 2juh_A           82 VPQDLLDRVLAAHAYWSQQQGK  103 (121)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHccchhc
Confidence            7777778889999877765554

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.09  E-value=3e-14  Score=113.35  Aligned_cols=56  Identities=18%  Similarity=0.134  Sum_probs=52.2

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612           60 YLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPAL  115 (327)
Q Consensus        60 ~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~  115 (327)
                      .+++.+.+++||.|||++|+++|.+||.+|..||..|+|||++|||+||..+++.+
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            46788999999999999999999999999999999999999999999999887764

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.36  E-value=5.5e-13  Score=102.78  Aligned_cols=54  Identities=13%  Similarity=0.227  Sum_probs=49.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHhhhhhhccccc
Q 043612           63 PDLKRGSFSPQEAALIIELHSILG----NRWAQIARHLPGRTDNEKKLMSHEIVPALA  116 (327)
Q Consensus        63 p~lkkg~WT~EED~~Ll~lV~~~G----~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k  116 (327)
                      +...+++||.|||.+|++++.+||    .+|.+||+.|||||..|||+||..|+..+.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~   71 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPS   71 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCC
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHccc
Confidence            356788999999999999999999    679999999999999999999999987654

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.32  E-value=1.5e-12  Score=101.63  Aligned_cols=48  Identities=21%  Similarity=0.391  Sum_probs=45.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhh
Q 043612           64 DLKRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEI  111 (327)
Q Consensus        64 ~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~i  111 (327)
                      ...+++||+|||++|+++|++||.+|.+||+.|++||..|||.||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999876

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.32  E-value=6.2e-13  Score=104.87  Aligned_cols=69  Identities=23%  Similarity=0.407  Sum_probs=60.2

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCccccccc----cccccccccccccceecc-----cCCCCCC-CCCHHHHHHHHHHHHH
Q 043612           15 GLWSPEEDEKLINYVTTYGHGCWSSVPKH----AGLQRCGKSCRLRWINYL-----RPDLKRG-SFSPQEAALIIELHSI   84 (327)
Q Consensus        15 g~WT~EEDe~L~~lV~kyg~~nW~~IA~~----l~~gRt~~QCr~Rw~~~L-----~p~lkkg-~WT~EED~~Ll~lV~~   84 (327)
                      ++||+|||++|+++|++||.++|..|++.    |+ +||+.||++||.+++     +|.++++ +...+...+++.+...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999899999995    77 999999999999988     5665554 6788888888888764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.31  E-value=5.2e-13  Score=109.61  Aligned_cols=78  Identities=27%  Similarity=0.415  Sum_probs=65.8

Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccccccccccceecc-----cCCCCCCCCCHHHHHH-
Q 043612            8 NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHA----GLQRCGKSCRLRWINYL-----RPDLKRGSFSPQEAAL-   77 (327)
Q Consensus         8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l----~~gRt~~QCr~Rw~~~L-----~p~lkkg~WT~EED~~-   77 (327)
                      .+++.++++||.|||+.|+++|++||.++|..|++.+    + +||..+|++||.+++     +|.+++|.-+++|-.. 
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r   85 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR   85 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence            4578889999999999999999999998999999965    5 999999999999998     6888898877776544 


Q ss_pred             HHHHHHHhC
Q 043612           78 IIELHSILG   86 (327)
Q Consensus        78 Ll~lV~~~G   86 (327)
                      ++++...+|
T Consensus        86 v~~~~~~~~   94 (105)
T 2aje_A           86 VLNAHGYWT   94 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            667666544

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.30  E-value=5.2e-13  Score=102.93  Aligned_cols=61  Identities=20%  Similarity=0.303  Sum_probs=48.0

Q ss_pred             CCCccCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCC
Q 043612            3 HHSCCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKR   67 (327)
Q Consensus         3 R~~c~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkk   67 (327)
                      |......|.+++++||+|||++|++++.+||.+ |..||+.|  |||+.||+.||.. |....+.
T Consensus        12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A           12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             -------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred             ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence            334456789999999999999999999999975 99999999  7999999999974 5544443

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.26  E-value=1.1e-12  Score=102.46  Aligned_cols=51  Identities=24%  Similarity=0.522  Sum_probs=47.0

Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceec
Q 043612            8 NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY   60 (327)
Q Consensus         8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~   60 (327)
                      .+....+++||+|||++|+++|++|| ++|..||++|+ +||+.||+.||.++
T Consensus        12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            34556689999999999999999999 78999999999 99999999999987

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.26  E-value=5.9e-12  Score=103.37  Aligned_cols=79  Identities=20%  Similarity=0.193  Sum_probs=60.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC----CCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCC
Q 043612           63 PDLKRGSFSPQEAALIIELHSILGN-RWAQIARHL----PGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLN  137 (327)
Q Consensus        63 p~lkkg~WT~EED~~Ll~lV~~~G~-kW~~IA~~l----pgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~  137 (327)
                      ...++++||.|||+.|+++|++||. +|+.|++.+    +|||+.+||+||+.+++...         ++|.+.+..-++
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~---------~~p~~~rg~~~P   79 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK---------ISPQQRRGEPVP   79 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT---------CCTTTTTCCSCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc---------CCcccccCCCCC
Confidence            4567899999999999999999996 999999965    89999999999999987643         345555555555


Q ss_pred             CCchh-hhhhhhcc
Q 043612          138 TNPNL-ILNSHQQD  150 (327)
Q Consensus       138 eEd~l-I~~~~~~~  150 (327)
                      .+--. |+++|+.+
T Consensus        80 ~~~l~rv~~~~~~~   93 (105)
T 2aje_A           80 QELLNRVLNAHGYW   93 (105)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            44333 44555443

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.18  E-value=2.5e-11  Score=90.68  Aligned_cols=51  Identities=20%  Similarity=0.345  Sum_probs=46.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCHHHHHh---hCCCCCHHHHHhhhhhhcccc
Q 043612           65 LKRGSFSPQEAALIIELHSILGNRWAQIAR---HLPGRTDNEKKLMSHEIVPAL  115 (327)
Q Consensus        65 lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~---~lpgRT~~qcK~Rw~~ilr~~  115 (327)
                      ..+.+||+|||+.|+++|++||.+|..|+.   ++++||..++|+||+.|.+..
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            367899999999999999999999999994   679999999999999998764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.17  E-value=2.8e-11  Score=95.41  Aligned_cols=48  Identities=25%  Similarity=0.309  Sum_probs=44.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHhhhhhhcccc
Q 043612           68 GSFSPQEAALIIELHSILGN-RWAQIARH----LPGRTDNEKKLMSHEIVPAL  115 (327)
Q Consensus        68 g~WT~EED~~Ll~lV~~~G~-kW~~IA~~----lpgRT~~qcK~Rw~~ilr~~  115 (327)
                      ++||.|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+.+++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999996 99999996    89999999999999988754

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.79  E-value=2.7e-12  Score=102.07  Aligned_cols=54  Identities=19%  Similarity=0.404  Sum_probs=49.7

Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccC
Q 043612            8 NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRP   63 (327)
Q Consensus         8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p   63 (327)
                      ..+.+++|+||+|||++|+++|..||. +|..||+.|+ |||+.||+.||.++|..
T Consensus        10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            456788999999999999999999997 6999999999 99999999999998764

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.16  E-value=3.3e-12  Score=98.43  Aligned_cols=54  Identities=13%  Similarity=0.441  Sum_probs=48.0

Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccccceeccc
Q 043612            8 NKQKVKRGLWSPEEDEKLINYVTTYGH---GCWSSVPKHAGLQRCGKSCRLRWINYLR   62 (327)
Q Consensus         8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~---~nW~~IA~~l~~gRt~~QCr~Rw~~~L~   62 (327)
                      .+....++.||+|||++|++++.+||.   .+|.+||+.|+ |||..||+.||.+++.
T Consensus        12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            455677899999999999999999993   46999999999 9999999999998664

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.13  E-value=3.6e-11  Score=96.65  Aligned_cols=50  Identities=26%  Similarity=0.416  Sum_probs=45.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612           66 KRGSFSPQEAALIIELHSILG----NRWAQIARHLPGRTDNEKKLMSHEIVPAL  115 (327)
Q Consensus        66 kkg~WT~EED~~Ll~lV~~~G----~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~  115 (327)
                      .+++||.|||++|++++.+||    .+|.+||+.|||||.+|||+||..++..+
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    57999999999999999999999987664

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.12  E-value=1.3e-11  Score=113.95  Aligned_cols=70  Identities=13%  Similarity=0.195  Sum_probs=54.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCC------HHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCC
Q 043612           64 DLKRGSFSPQEAALIIELHSILGNR------WAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLN  137 (327)
Q Consensus        64 ~lkkg~WT~EED~~Ll~lV~~~G~k------W~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~  137 (327)
                      .+.+++||+|||++|+++|+++|++      |.+||+.|+|||++|||+||+.+++..              +. ..|+.
T Consensus         5 ~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~--------------ln-~vy~~   69 (246)
T 1ign_A            5 SHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR--------------LE-YVYEV   69 (246)
T ss_dssp             ---CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG--------------CC-CEECB
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh--------------cc-ccccc
Confidence            5678999999999999999999875      999999999999999998888766553              22 22555


Q ss_pred             CCchhhhhhhh
Q 043612          138 TNPNLILNSHQ  148 (327)
Q Consensus       138 eEd~lI~~~~~  148 (327)
                      +++..|+..+.
T Consensus        70 ded~~Li~d~~   80 (246)
T 1ign_A           70 DKFGKLVRDDD   80 (246)
T ss_dssp             CTTSCBCBCTT
T ss_pred             CcchhhhhccC
Confidence            66666655554

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=3.9e-09  Score=78.11  Aligned_cols=47  Identities=11%  Similarity=0.013  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhc
Q 043612           66 KRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIV  112 (327)
Q Consensus        66 kkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~il  112 (327)
                      ..++||+||++++++++.+||.+|..||..|++||..||+.+|..-.
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            45799999999999999999999999999999999999999987543

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.85  E-value=3e-10  Score=91.27  Aligned_cols=48  Identities=15%  Similarity=0.352  Sum_probs=43.0

Q ss_pred             cccCCCHHHHHHHHHHHHHhC---CCCccccccccccccccccccccceecc
Q 043612           13 KRGLWSPEEDEKLINYVTTYG---HGCWSSVPKHAGLQRCGKSCRLRWINYL   61 (327)
Q Consensus        13 kkg~WT~EEDe~L~~lV~kyg---~~nW~~IA~~l~~gRt~~QCr~Rw~~~L   61 (327)
                      .++.||.|||++|.+++.+|+   ...|.+||+.|+ |||..||+.||..++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            367899999999999999997   346999999999 999999999998764

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.80  E-value=3.1e-09  Score=85.39  Aligned_cols=64  Identities=17%  Similarity=0.214  Sum_probs=57.5

Q ss_pred             ccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhC-----CCCCHHHHHhhhhhhcccccCC
Q 043612           51 KSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHL-----PGRTDNEKKLMSHEIVPALASF  118 (327)
Q Consensus        51 ~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~l-----pgRT~~qcK~Rw~~ilr~~k~~  118 (327)
                      .=+.++|.++|.+    ++||.||+..|++|+++||.+|..|+..+     ++||..++|+||..+.+.+...
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~   86 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4477899999875    89999999999999999999999999998     5899999999999998876544

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.74  E-value=9.3e-09  Score=78.86  Aligned_cols=51  Identities=14%  Similarity=0.307  Sum_probs=45.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHhhhhhhcccc
Q 043612           64 DLKRGSFSPQEAALIIELHSILG----NRWAQIARHLPGRTDNEKKLMSHEIVPAL  115 (327)
Q Consensus        64 ~lkkg~WT~EED~~Ll~lV~~~G----~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~  115 (327)
                      ..+.+.||.|||++|.+++.+|+    .+|.+||+.| |||..+|+.||+.+....
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~   59 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV   59 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence            34578999999999999999997    5699999998 999999999999987764

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.69  E-value=3.3e-09  Score=79.24  Aligned_cols=49  Identities=20%  Similarity=0.274  Sum_probs=43.9

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccc---cccccccccccccccceeccc
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVP---KHAGLQRCGKSCRLRWINYLR   62 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA---~~l~~gRt~~QCr~Rw~~~L~   62 (327)
                      .++++||+|||+.|+++|++||. +|..|+   .++. +||...+++||.++..
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            46889999999999999999997 799999   4666 9999999999998654

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=5.2e-09  Score=77.40  Aligned_cols=53  Identities=9%  Similarity=0.149  Sum_probs=47.3

Q ss_pred             ccCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceec
Q 043612            6 CCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY   60 (327)
Q Consensus         6 c~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~   60 (327)
                      .+.+.+...+.||+||++++.+++.+|| ++|..||..|+ +||..||+.+|...
T Consensus         4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A            4 GSSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLT   56 (61)
T ss_dssp             SCCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            3556777889999999999999999999 57999999999 99999999998653

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.54  E-value=1e-07  Score=73.34  Aligned_cols=52  Identities=15%  Similarity=0.132  Sum_probs=45.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612           67 RGSFSPQEAALIIELHSILGN----RWAQIARHLPGRTDNEKKLMSHEIVPALASF  118 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G~----kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~  118 (327)
                      ...||.+|+.+|.+++..|+.    +|.+||..|+|||..+|+.||..+++...+.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~   63 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQ   63 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccccc
Confidence            458999999999999999983    5999999999999999999999987765443

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.52  E-value=1.1e-07  Score=87.20  Aligned_cols=49  Identities=10%  Similarity=0.112  Sum_probs=45.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612           66 KRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPA  114 (327)
Q Consensus        66 kkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~  114 (327)
                      ..++||.||++++++++.+||++|..||+.|++||..|||++|....++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999999999999876554

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.45  E-value=1.3e-07  Score=95.08  Aligned_cols=44  Identities=11%  Similarity=0.170  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhh
Q 043612           68 GSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEI  111 (327)
Q Consensus        68 g~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~i  111 (327)
                      ..||.||-+++++++.+||.+|..||+.+++||..|||..|...
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999988653

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.38  E-value=3.7e-08  Score=75.52  Aligned_cols=51  Identities=12%  Similarity=0.232  Sum_probs=43.8

Q ss_pred             CCcccCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccccceecccC
Q 043612           11 KVKRGLWSPEEDEKLINYVTTYGH---GCWSSVPKHAGLQRCGKSCRLRWINYLRP   63 (327)
Q Consensus        11 k~kkg~WT~EEDe~L~~lV~kyg~---~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p   63 (327)
                      +.+++.||.|||++|.+++.+|+.   ..|.+||+.+  |||..||+.||..+...
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence            445779999999999999999973   4599999997  59999999999876543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.36  E-value=4e-07  Score=67.14  Aligned_cols=47  Identities=17%  Similarity=0.215  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCC-HHHHHh-hCCCCCHHHHHhhhhhhcc
Q 043612           67 RGSFSPQEAALIIELHSIL--------GNR-WAQIAR-HLPGRTDNEKKLMSHEIVP  113 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~--------G~k-W~~IA~-~lpgRT~~qcK~Rw~~ilr  113 (327)
                      |.+||.|||+.|++.|.++        |++ |.++|+ .++++|-.+||+||.+.++
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        433 999999 7999999999999987654

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.24  E-value=1.4e-07  Score=72.57  Aligned_cols=49  Identities=24%  Similarity=0.490  Sum_probs=43.5

Q ss_pred             ccCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccccceecccC
Q 043612           14 RGLWSPEEDEKLINYVTTYGH---GCWSSVPKHAGLQRCGKSCRLRWINYLRP   63 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~---~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p   63 (327)
                      ...||.+|+++|.+++..|+.   ++|..||..++ +||..+|+.||..++..
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence            467999999999999999975   46999999999 99999999999876543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.23  E-value=1.5e-07  Score=69.40  Aligned_cols=48  Identities=25%  Similarity=0.470  Sum_probs=42.7

Q ss_pred             ccCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccccccccccccccceeccc
Q 043612           14 RGLWSPEEDEKLINYVTTY--------GHGCWSSVPK-HAGLQRCGKSCRLRWINYLR   62 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~ky--------g~~nW~~IA~-~l~~gRt~~QCr~Rw~~~L~   62 (327)
                      |.+||.|||+.|++.|.+|        |..-|+.+|+ .++ ++|..+||+||.+.|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            6789999999999999999        4445999999 788 9999999999998774

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.43  E-value=3e-07  Score=69.64  Aligned_cols=49  Identities=12%  Similarity=0.173  Sum_probs=45.1

Q ss_pred             CCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612           69 SFSPQEAALIIELHSILGN---RWAQIARHLPGRTDNEKKLMSHEIVPALASF  118 (327)
Q Consensus        69 ~WT~EED~~Ll~lV~~~G~---kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~  118 (327)
                      .||.|||+.|+..+++-|.   .|+.||+.| +||.+|+++||+.|++-+...
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~kS   67 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLFEKS   67 (70)
Confidence            6999999999999999996   799999999 999999999999998876554

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.11  E-value=6.5e-07  Score=82.18  Aligned_cols=50  Identities=18%  Similarity=0.381  Sum_probs=45.0

Q ss_pred             CCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceeccc
Q 043612           11 KVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLR   62 (327)
Q Consensus        11 k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~   62 (327)
                      .....+||.||++++++++.+|| ++|..||+.++ +||..||+.+|.++..
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            34578999999999999999999 57999999999 9999999999987653

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.08  E-value=3.3e-06  Score=67.33  Aligned_cols=50  Identities=14%  Similarity=0.223  Sum_probs=45.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHhhhhhhcccccC
Q 043612           68 GSFSPQEAALIIELHSILGN---RWAQIARHLPGRTDNEKKLMSHEIVPALAS  117 (327)
Q Consensus        68 g~WT~EED~~Ll~lV~~~G~---kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~  117 (327)
                      --||.|||+.|+...++-|.   .|+.||+.|.+|+.+|+++||+.|++.+.+
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~   86 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence            46999999999999999996   799999999999999999999998887644

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.92  E-value=2.1e-05  Score=58.44  Aligned_cols=47  Identities=13%  Similarity=0.162  Sum_probs=42.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHhhhh
Q 043612           63 PDLKRGSFSPQEAALIIELHSILGNRWAQIAR-HLPGRTDNEKKLMSH  109 (327)
Q Consensus        63 p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~-~lpgRT~~qcK~Rw~  109 (327)
                      |.+....||+||-++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   52 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY   52 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence            56677899999999999999999999999999 599999999997765

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.88  E-value=2.6e-06  Score=65.47  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHhhhh
Q 043612           67 RGSFSPQEAALIIELHSILGN----RWAQIARHLPGRTDNEKKLMSH  109 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G~----kW~~IA~~lpgRT~~qcK~Rw~  109 (327)
                      .+.||.||+++|..++..|+.    +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    6999999999999999998875

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.86  E-value=2.4e-06  Score=65.65  Aligned_cols=44  Identities=11%  Similarity=0.180  Sum_probs=39.0

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCC---Cccccccccccccccccccccce
Q 043612           14 RGLWSPEEDEKLINYVTTYGHG---CWSSVPKHAGLQRCGKSCRLRWI   58 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~---nW~~IA~~l~~gRt~~QCr~Rw~   58 (327)
                      .+.||.||+++|.+++..|+.+   .|.+||+.+| |||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            5689999999999999999653   6999999999 999999999985

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.84  E-value=1.9e-05  Score=75.45  Aligned_cols=103  Identities=14%  Similarity=0.238  Sum_probs=80.7

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------cceec--------------------------
Q 043612           14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRL-------RWINY--------------------------   60 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~-------Rw~~~--------------------------   60 (327)
                      -+.||..|...++.++.+||..+|..||..|+ ++|...++.       ||..+                          
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~  188 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA  188 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999998 888765422       22110                          


Q ss_pred             ----------------cc-CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHh------------hCCCCCHHHHHhh
Q 043612           61 ----------------LR-PDLKRGSFSPQEAALIIELHSILGN----RWAQIAR------------HLPGRTDNEKKLM  107 (327)
Q Consensus        61 ----------------L~-p~lkkg~WT~EED~~Ll~lV~~~G~----kW~~IA~------------~lpgRT~~qcK~R  107 (327)
                                      +. +..+...||++||..|+-.+.+||-    .|..|..            ++..||+.++..|
T Consensus       189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR  268 (304)
T 1ofc_X          189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR  268 (304)
T ss_dssp             HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred             HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence                            00 1223468999999999999999994    4999973            3467999999999


Q ss_pred             hhhhcccccC
Q 043612          108 SHEIVPALAS  117 (327)
Q Consensus       108 w~~ilr~~k~  117 (327)
                      =..|++.+.+
T Consensus       269 c~tLi~~iek  278 (304)
T 1ofc_X          269 CNTLITLIER  278 (304)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988887633

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.71  E-value=4.8e-05  Score=60.96  Aligned_cols=59  Identities=19%  Similarity=0.260  Sum_probs=49.9

Q ss_pred             cceecccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCC-----CCCHHHHHhhhhhhcccccCC
Q 043612           56 RWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIARHLP-----GRTDNEKKLMSHEIVPALASF  118 (327)
Q Consensus        56 Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lp-----gRT~~qcK~Rw~~ilr~~k~~  118 (327)
                      .|..+|.    ...||.||...|++|+++|+-+|..|+....     .||-.++|.||..+.+.+...
T Consensus        23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~   86 (93)
T 4iej_A           23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV   86 (93)
T ss_dssp             HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3445554    3689999999999999999999999999873     799999999999988876543

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.62  E-value=2.1e-05  Score=58.36  Aligned_cols=51  Identities=10%  Similarity=0.166  Sum_probs=45.2

Q ss_pred             cCCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccccccccccee
Q 043612            7 CNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPK-HAGLQRCGKSCRLRWIN   59 (327)
Q Consensus         7 ~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~-~l~~gRt~~QCr~Rw~~   59 (327)
                      +..|+.....||+||-++..+++.+||. +|..|++ .++ +|+..||.+-|..
T Consensus         2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            2 SSGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            4567888899999999999999999995 7999999 588 9999999987753

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.41  E-value=0.00022  Score=56.99  Aligned_cols=44  Identities=23%  Similarity=0.083  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhh
Q 043612           67 RGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHE  110 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~  110 (327)
                      ...||+||.++..++...||.+|..||..|++||..+|..-|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            46899999999999999999999999999999999999987754

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.38  E-value=0.00028  Score=53.44  Aligned_cols=43  Identities=21%  Similarity=0.193  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHhhhh
Q 043612           67 RGSFSPQEAALIIELHSILGNRWAQIAR-HLPGRTDNEKKLMSH  109 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G~kW~~IA~-~lpgRT~~qcK~Rw~  109 (327)
                      ...||+||-.+..+++.+||.+|..|++ .|++||..+|..-|.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence            4589999999999999999999999999 599999999997776

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.17  E-value=8e-05  Score=59.68  Aligned_cols=49  Identities=10%  Similarity=0.270  Sum_probs=42.4

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccccceeccc
Q 043612           13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAG----LQRCGKSCRLRWINYLR   62 (327)
Q Consensus        13 kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~----~gRt~~QCr~Rw~~~L~   62 (327)
                      ....||.||+..|.+++++|+.+ |..|+..+.    .+||..++++||..+..
T Consensus        29 ~~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           29 HDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            34899999999999999999965 999999983    27999999999987543

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.16  E-value=0.00032  Score=54.43  Aligned_cols=55  Identities=11%  Similarity=0.193  Sum_probs=45.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----------CCHHHHHhhC----CCCCHHHHHhhhhhhcccccCCCc
Q 043612           66 KRGSFSPQEAALIIELHSILG----------NRWAQIARHL----PGRTDNEKKLMSHEIVPALASFPA  120 (327)
Q Consensus        66 kkg~WT~EED~~Ll~lV~~~G----------~kW~~IA~~l----pgRT~~qcK~Rw~~ilr~~k~~~~  120 (327)
                      +...||.+|-..||+++..+.          ..|..||..|    -.||+.||+.+|..|.+.-+...+
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~   71 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH   71 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999997632          1399999987    369999999999999988766543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.13  E-value=0.0001  Score=74.25  Aligned_cols=47  Identities=17%  Similarity=0.388  Sum_probs=42.7

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceec
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY   60 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~   60 (327)
                      ....+||.||-+++++++.+||. +|..||+.++ +||..||+..|.++
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~  424 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            34689999999999999999995 7999999999 99999999988753

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.90  E-value=6.2e-05  Score=58.53  Aligned_cols=51  Identities=20%  Similarity=0.509  Sum_probs=40.6

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCC------C---Cccccccccc---cccccccccccceeccc
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGH------G---CWSSVPKHAG---LQRCGKSCRLRWINYLR   62 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~------~---nW~~IA~~l~---~gRt~~QCr~Rw~~~L~   62 (327)
                      .+...||.+|-..|+.+......      .   -|..||..|.   ..||+.||+.+|.++..
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k   64 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK   64 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            45788999999999999976411      1   4999999864   47999999999987543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.90  E-value=0.00097  Score=59.30  Aligned_cols=106  Identities=10%  Similarity=0.115  Sum_probs=68.6

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHhC--CCCccccccc--cccccccccccc-------ccee-------------------
Q 043612           10 QKVKRGLWSPEEDEKLINYVTTYG--HGCWSSVPKH--AGLQRCGKSCRL-------RWIN-------------------   59 (327)
Q Consensus        10 ~k~kkg~WT~EEDe~L~~lV~kyg--~~nW~~IA~~--l~~gRt~~QCr~-------Rw~~-------------------   59 (327)
                      |+-....||..|-..|++++.+||  .+.|..|++.  +. +|+...++.       +...                   
T Consensus         3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~   81 (211)
T 4b4c_A            3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKV   81 (211)
T ss_dssp             -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence            455677899999999999999999  5679999764  33 454332211       0000                   


Q ss_pred             -------------------------ccc--------------------CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHH
Q 043612           60 -------------------------YLR--------------------PDLKRGSFSPQEAALIIELHSILG-NRWAQIA   93 (327)
Q Consensus        60 -------------------------~L~--------------------p~lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA   93 (327)
                                               .|.                    +......||.+||..|+..+.+|| ++|.+|-
T Consensus        82 ~~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir  161 (211)
T 4b4c_A           82 KGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIK  161 (211)
T ss_dssp             -CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHH
Confidence                                     000                    000123599999999999999999 8999998


Q ss_pred             hhC--------------CCCCHHHHHhhhhhhccccc
Q 043612           94 RHL--------------PGRTDNEKKLMSHEIVPALA  116 (327)
Q Consensus        94 ~~l--------------pgRT~~qcK~Rw~~ilr~~k  116 (327)
                      ...              ..+++..+..|-..|++.+.
T Consensus       162 ~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~  198 (211)
T 4b4c_A          162 MDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLS  198 (211)
T ss_dssp             HCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHH
T ss_pred             hChhcCccccccccccccCCChHHHHHHHHHHHHHHH
Confidence            732              12456678888777666553

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.83  E-value=0.00032  Score=55.99  Aligned_cols=43  Identities=14%  Similarity=0.286  Sum_probs=39.6

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccce
Q 043612           14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWI   58 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~   58 (327)
                      ...||+||.+++.+++..|| ++|..||+.++ +||..+|...|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHh
Confidence            57899999999999999999 57999999999 999999998764

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.70  E-value=0.00058  Score=51.63  Aligned_cols=45  Identities=13%  Similarity=0.138  Sum_probs=40.0

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccce
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPK-HAGLQRCGKSCRLRWI   58 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~-~l~~gRt~~QCr~Rw~   58 (327)
                      .....||+||-++..+++.+||. +|..|++ .++ +|+..+|..-|.
T Consensus         6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY   51 (70)
T 2crg_A            6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYY   51 (70)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHH
Confidence            34668999999999999999995 7999999 588 999999988775

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.32  E-value=0.0053  Score=60.06  Aligned_cols=105  Identities=16%  Similarity=0.233  Sum_probs=78.4

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------cceec--------------------------
Q 043612           14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRL-------RWINY--------------------------   60 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~-------Rw~~~--------------------------   60 (327)
                      -+.||.-|=..++.++.+||..+-..||..|+.+++...++.       ||..+                          
T Consensus       123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357999999999999999999999999999853566443321       11110                          


Q ss_pred             --------------c----cCC-CCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhh------------CCCCCHHHHH
Q 043612           61 --------------L----RPD-LKRGSFSPQEAALIIELHSILG----NRWAQIARH------------LPGRTDNEKK  105 (327)
Q Consensus        61 --------------L----~p~-lkkg~WT~EED~~Ll~lV~~~G----~kW~~IA~~------------lpgRT~~qcK  105 (327)
                                    |    .+. .+...||.+||..|+-++.+||    +.|..|-..            +..||+.++.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                          0    011 1345799999999999999999    459999553            3579999999


Q ss_pred             hhhhhhcccccCC
Q 043612          106 LMSHEIVPALASF  118 (327)
Q Consensus       106 ~Rw~~ilr~~k~~  118 (327)
                      .|=..|++.+.+-
T Consensus       283 rRc~tLi~~IeKE  295 (374)
T 2y9y_A          283 RRGNTLLQCLEKE  295 (374)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887543

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.25  E-value=0.00071  Score=51.24  Aligned_cols=49  Identities=10%  Similarity=0.212  Sum_probs=41.6

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCC--CCccccccccccccccccccccceeccc
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGH--GCWSSVPKHAGLQRCGKSCRLRWINYLR   62 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~--~nW~~IA~~l~~gRt~~QCr~Rw~~~L~   62 (327)
                      -.--.||.|||..|+..+++-|.  .-|..||+.++  |++.|+..||..++.
T Consensus        12 e~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           12 EIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLMK   62 (70)
Confidence            34457999999999999999886  24999999884  999999999987654

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.02  E-value=0.0015  Score=52.15  Aligned_cols=49  Identities=18%  Similarity=0.339  Sum_probs=42.3

Q ss_pred             CCcccCCCHHHHHHHHHHHHHhCC--CCccccccccccccccccccccceec
Q 043612           11 KVKRGLWSPEEDEKLINYVTTYGH--GCWSSVPKHAGLQRCGKSCRLRWINY   60 (327)
Q Consensus        11 k~kkg~WT~EEDe~L~~lV~kyg~--~nW~~IA~~l~~gRt~~QCr~Rw~~~   60 (327)
                      .-+--.||.|||..++...++.|.  .-|..||+.++ +|+..|+++||+.+
T Consensus        30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            344567999999999999999975  35999999998 99999999999763

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=93.84  E-value=0.015  Score=46.45  Aligned_cols=48  Identities=10%  Similarity=0.279  Sum_probs=40.3

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccccceecc
Q 043612           13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAG----LQRCGKSCRLRWINYL   61 (327)
Q Consensus        13 kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~----~gRt~~QCr~Rw~~~L   61 (327)
                      +...||.||...|.+++++|..+ |-.|+....    ..|+..+.++||..+.
T Consensus        29 ~~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           29 HDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999965 999998774    2688888999987654

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=93.51  E-value=0.057  Score=47.71  Aligned_cols=38  Identities=26%  Similarity=0.524  Sum_probs=30.7

Q ss_pred             ccCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccc
Q 043612            6 CCNKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKH   43 (327)
Q Consensus         6 c~~K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~   43 (327)
                      +..++......||.+||..|+.+|.+||.++|..|-.-
T Consensus       126 ~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D  163 (211)
T 4b4c_A          126 CHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD  163 (211)
T ss_dssp             SCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             CCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence            33444444567999999999999999999999998763

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.12  E-value=0.31  Score=36.24  Aligned_cols=49  Identities=10%  Similarity=-0.028  Sum_probs=40.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC---HHHHHhhC--CCCCHHHHHhhhhhhcc
Q 043612           65 LKRGSFSPQEAALIIELHSILGNR---WAQIARHL--PGRTDNEKKLMSHEIVP  113 (327)
Q Consensus        65 lkkg~WT~EED~~Ll~lV~~~G~k---W~~IA~~l--pgRT~~qcK~Rw~~ilr  113 (327)
                      ..+-.||+|.-+..+++|.++|..   +..|.+.|  +|.|..+|+-+.+...-
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~   58 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            346689999999999999999944   88999885  78999999976655433

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=89.86  E-value=0.14  Score=47.93  Aligned_cols=28  Identities=43%  Similarity=0.833  Sum_probs=26.0

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCcccccc
Q 043612           15 GLWSPEEDEKLINYVTTYGHGCWSSVPK   42 (327)
Q Consensus        15 g~WT~EEDe~L~~lV~kyg~~nW~~IA~   42 (327)
                      ..|+.+||..|+..|-+||.|+|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4599999999999999999999999975

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=88.92  E-value=0.48  Score=45.15  Aligned_cols=40  Identities=18%  Similarity=0.272  Sum_probs=36.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHh
Q 043612           67 RGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKL  106 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~  106 (327)
                      -+.||..|...++.++.+|| ..|..||..|+|+|..+|+.
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~  150 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIE  150 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHH
Confidence            35799999999999999999 47999999999999999863

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=87.88  E-value=0.17  Score=37.72  Aligned_cols=50  Identities=18%  Similarity=0.189  Sum_probs=37.4

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHhCCCC--cccccccccc-cccccccccccee
Q 043612           10 QKVKRGLWSPEEDEKLINYVTTYGHGC--WSSVPKHAGL-QRCGKSCRLRWIN   59 (327)
Q Consensus        10 ~k~kkg~WT~EEDe~L~~lV~kyg~~n--W~~IA~~l~~-gRt~~QCr~Rw~~   59 (327)
                      .+..+-.||+|.-+++.++|+..|...  ++.|.+.|+. |.|..+++.+.++
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            355678899999999999999999432  6788887763 5677777665543

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=84.95  E-value=0.62  Score=43.61  Aligned_cols=27  Identities=19%  Similarity=0.343  Sum_probs=24.8

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCHHHHHhh
Q 043612           69 SFSPQEAALIIELHSILG-NRWAQIARH   95 (327)
Q Consensus        69 ~WT~EED~~Ll~lV~~~G-~kW~~IA~~   95 (327)
                      .|+.+||..|+..|.+|| +.|.+|..-
T Consensus       170 ~W~~~dD~~LLvGIykyGyG~We~Ir~D  197 (270)
T 2xb0_X          170 NWTKEEDEKLLIGVFKYGYGSWTQIRDD  197 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             CcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence            499999999999999999 789999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	327
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	6e-22
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	9e-08
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-20
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-06
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	5e-19
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	4e-04
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	6e-19
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-18
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	3e-04
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	5e-17
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	8e-07
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	4e-15
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-05
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-13
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	7e-08
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	1e-12
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	3e-12
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-09
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	4e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	5e-04
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-08
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	3e-06
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	8e-05

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.2 bits (211), Expect = 6e-22
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD 64
          + +G W+ EED++LI  V  YG   WS + KH    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (109), Expect = 9e-08
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 65  LKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKL 106
           L +G ++ +E   +I+L    G  RW+ IA+HL GR   + + 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRE 43

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.7 bits (202), Expect = 1e-20
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD 64
          +  W+ EEDEKL   V   G   W  +  +    R    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 67  RGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKL 106
           +  ++ +E   + +L    G + W  IA +LP RTD + + 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQH 41

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (190), Expect = 5e-19
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQ-RCGKSCRLRWINYLR 62
          KR  W  EED+ L + V  YG G WS +  H     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 66  KRGSFSPQEAALIIELHSILGN-RWAQIARHLP--GRTDN 102
           KR ++  +E   +       G   W++I  H     RT  
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSV 40

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 77.8 bits (191), Expect = 6e-19
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 17 WSPEEDEKLINYVTTYGHGCWSSVPKHA---GLQRCGKSCRLRWINYLR-----PDLKRG 68
          +S  E E L+  V   G G W  V   A      R     + +W   +      P  +RG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 69 SFSPQE-AALIIELHSILGNR 88
             PQ+    ++  H+    +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (186), Expect = 2e-18
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQ-RCGKSCRLRWINYLRPDL 65
          K+  W+ EE E +   V  YG G W+++ K+     R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 3e-04
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 66  KRGSFSPQEAALIIELHSILG-NRWAQIARH--LPGRTDN 102
           K+  ++ +E+  +       G   WA I+++     RT  
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAV 40

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.7 bits (178), Expect = 5e-17
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 14 RGLWSPEEDEKLINYVTTYGHG-----CWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRG 68
          +  ++ EEDE +++ V            +  +  +      G S R R+  YL   L+  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 69 SFSPQEAALIIELH 82
              +   L+ +  
Sbjct: 60 YEVDKFGKLVRDDD 73

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (104), Expect = 8e-07
 Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 67  RGSFSPQEAALIIELHSILGNR------WAQIARHLPGRTDNE 103
           + SF+ +E   I+++      R      + +I+ ++P  T N 
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNS 43

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (163), Expect = 4e-15
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 17 WSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQE 74
          W+ EE E     +  +G   W+ + K  G  R     +     Y +  +K G      
Sbjct: 5  WTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP 60

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 1e-05
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 70  FSPQEAALIIELHSILGNRWAQIARHLPGRTDNE 103
           ++ +E  L  +  +  G RW +I++ +  RT  +
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQ 38

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 1e-13
 Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 2/52 (3%)

Query: 8  NKQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGL--QRCGKSCRLRW 57
           + +     W+  + + L   +  Y  G      K A     +  + C  R+
Sbjct: 6  ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 7e-08
 Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 4/46 (8%)

Query: 62  RPDLKRGSFSPQEAALIIELHSILG----NRWAQIARHLPGRTDNE 103
           R       ++  +  L+            + W +IAR +P ++  +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKED 52

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 1e-12
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 17 WSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY 60
          W+ +E+  L+  V   G G W  V       +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.3 bits (141), Expect = 3e-12
 Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLR 62
          +  W+ EED  +           W+ + K     R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRL-GNRWAEIAKLLP-GRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.2 bits (120), Expect = 2e-09
 Identities = 20/40 (50%), Positives = 28/40 (70%)

Query: 67  RGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKL 106
           + S++ +E  +I + H  LGNRWA+IA+ LPGRTDN  K 
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKN 40

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLR 62
              W+ EE    +  +  YG   + ++    G  +     +  ++NY R
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 51

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 4e-08
 Identities = 4/38 (10%), Positives = 15/38 (39%)

Query: 66  KRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE 103
               ++ +E  L ++     G  +  I+  +  ++  +
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQ 41

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 50.3 bits (120), Expect = 3e-09
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 17 WSPEEDEKLINYVTTYGHGCWSSVPKHAGL--QRCGKSCRLRWINYLRPDLKR 67
          WS +E++     +  Y           A     R  +  +  +   L  D+K 
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 35.7 bits (82), Expect = 5e-04
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 69  SFSPQEAALIIELHSILG----NRWAQIARHLPGRTDNE 103
            +S +E        ++      +RWA +AR + GRT  E
Sbjct: 3   PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEE 41

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 9/38 (23%), Positives = 12/38 (31%)

Query: 66  KRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNE 103
               +S QE     E        +  IA  L  +T  E
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAE 53

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 2/54 (3%)

Query: 9  KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLR 62
          K +    +WS +E E        +    +  +      ++    C L +    +
Sbjct: 12 KDRQVMNMWSEQEKETFREKFMQHPKN-FGLIASFLE-RKTVAECVLYYYLTKK 63

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (90), Expect = 8e-05
 Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 38  SSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNR---WAQIAR 94
            ++PK +    C                K   ++ +   +I+ +    G +   ++ I++
Sbjct: 9   GALPKASEATVCAN-----NSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQ 63

Query: 95  HLPGRTDNE 103
            L  +T  E
Sbjct: 64  QLGNKTPVE 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	327
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.67
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.66
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.64
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.63
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.58
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.53
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.51
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.46
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.44
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.41
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.39
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.38
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.35
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.34
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.34
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.31
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.29
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.28
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.27
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.23
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.22
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.11
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.1
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.05
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.85
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.82
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.58
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.22
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.95
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.61
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.46
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.19
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.1
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.4
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.07
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.04
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.88
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.04
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	93.14
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	88.28
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	84.22

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=1e-19  Score=142.76  Aligned_cols=70  Identities=19%  Similarity=0.217  Sum_probs=64.5

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCC-----CccccccccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHH
Q 043612           14 RGLWSPEEDEKLINYVTTYGHG-----CWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSI   84 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~-----nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~   84 (327)
                      |+.||+|||++|+++|.+||..     +|..||+.|+ |||++|||+||.++|+|.++++.||.+||.+|++....
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            6899999999999999999864     3999999999 99999999999999999999999999999988765543

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=5.9e-18  Score=120.71  Aligned_cols=52  Identities=46%  Similarity=0.929  Sum_probs=49.7

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCC
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD   64 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~   64 (327)
                      ++||+||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            4799999999999999999999889999999999 999999999999999984

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=2.3e-17  Score=129.13  Aligned_cols=69  Identities=17%  Similarity=0.317  Sum_probs=63.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC------HHHHHhhCCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCCc
Q 043612           67 RGSFSPQEAALIIELHSILGNR------WAQIARHLPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTNP  140 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G~k------W~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eEd  140 (327)
                      |+.||+|||++|+++|++||.+      |.+||+.|||||++|||              +||+++|+|.++...|+.+||
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr--------------~Rw~~~L~p~l~~~~~t~~ed   66 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIR--------------HRFRVYLSKRLEYVYEVDKFG   66 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHH--------------HHHHHTTGGGCCCEECBCTTS
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHH--------------HHHHHHcCccccCCCCCCchh
Confidence            5799999999999999999964      99999999999999999              777789999999999999999


Q ss_pred             hhhhhhhhc
Q 043612          141 NLILNSHQQ  149 (327)
Q Consensus       141 ~lI~~~~~~  149 (327)
                      .+|+..+..
T Consensus        67 ~ll~d~~~~   75 (86)
T d1igna1          67 KLVRDDDGN   75 (86)
T ss_dssp             CBCBCTTSC
T ss_pred             HHHHHHhhc
Confidence            999887754

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.3e-16  Score=111.45  Aligned_cols=47  Identities=43%  Similarity=0.685  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcc
Q 043612           67 RGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVP  113 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr  113 (327)
                      |++||+|||++|+++|++||++|+.||+.|||||++|||+||..++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.9e-17  Score=116.03  Aligned_cols=50  Identities=32%  Similarity=0.661  Sum_probs=48.0

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCC
Q 043612           14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPD   64 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~   64 (327)
                      |++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            67899999999999999999989999999999 999999999999999984

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=6e-16  Score=110.14  Aligned_cols=47  Identities=32%  Similarity=0.577  Sum_probs=43.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhh
Q 043612           65 LKRGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEI  111 (327)
Q Consensus        65 lkkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~i  111 (327)
                      +.||+||+|||++|+++|.+|| ++|..||+.|+|||+.|||+||...
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~   48 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH   48 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhh
Confidence            4789999999999999999999 6899999999999999999777653

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.53  E-value=4.7e-16  Score=120.53  Aligned_cols=74  Identities=26%  Similarity=0.444  Sum_probs=61.2

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCcccccccc---ccccccccccccceeccc-----CCCCCCCCCHHHHHHHHHHHHHhC
Q 043612           15 GLWSPEEDEKLINYVTTYGHGCWSSVPKHA---GLQRCGKSCRLRWINYLR-----PDLKRGSFSPQEAALIIELHSILG   86 (327)
Q Consensus        15 g~WT~EEDe~L~~lV~kyg~~nW~~IA~~l---~~gRt~~QCr~Rw~~~L~-----p~lkkg~WT~EED~~Ll~lV~~~G   86 (327)
                      .+||+|||++|+.+|++||.++|..|++.+   ..+||+.||++||.++|+     +..+++.|+++|   |+..|.+.+
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            479999999999999999999999999853   228999999999999884     677888999776   555555566


Q ss_pred             CCHHH
Q 043612           87 NRWAQ   91 (327)
Q Consensus        87 ~kW~~   91 (327)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            67764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=8.2e-15  Score=103.20  Aligned_cols=46  Identities=24%  Similarity=0.403  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhhc
Q 043612           67 RGSFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEIV  112 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~il  112 (327)
                      |++||.|||++|+++|.+|| ++|..||..|+|||+.|||+||...+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L   47 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL   47 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhC
Confidence            57899999999999999999 68999999999999999997776643

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.8e-15  Score=106.99  Aligned_cols=53  Identities=28%  Similarity=0.519  Sum_probs=48.2

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCccccccc--cccccccccccccceecccCCCC
Q 043612           13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKH--AGLQRCGKSCRLRWINYLRPDLK   66 (327)
Q Consensus        13 kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~--l~~gRt~~QCr~Rw~~~L~p~lk   66 (327)
                      +|++||+|||++|+++|++||.++|..||+.  ++ +||+.||++||.++++++++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~-~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFV-NRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCS-SCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCC-CcCHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999999899999987  45 89999999999999988753

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.8e-14  Score=99.26  Aligned_cols=48  Identities=21%  Similarity=0.172  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhC--CCCCHHHHHhhhhhhcc
Q 043612           66 KRGSFSPQEAALIIELHSILG-NRWAQIARHL--PGRTDNEKKLMSHEIVP  113 (327)
Q Consensus        66 kkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~l--pgRT~~qcK~Rw~~ilr  113 (327)
                      ++++||+|||++|+++|.+|| ++|+.||+.+  .|||+.|||+||+.|.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999 5899999985  59999999999998764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-13  Score=98.90  Aligned_cols=49  Identities=18%  Similarity=0.233  Sum_probs=44.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhh--CCCCCHHHHHhhhhhhccc
Q 043612           66 KRGSFSPQEAALIIELHSILG-NRWAQIARH--LPGRTDNEKKLMSHEIVPA  114 (327)
Q Consensus        66 kkg~WT~EED~~Ll~lV~~~G-~kW~~IA~~--lpgRT~~qcK~Rw~~ilr~  114 (327)
                      ++++||+|||++|+++|++|| ++|..||+.  |++||+.|||+||+.+++.
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~   52 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL   52 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcC
Confidence            478999999999999999999 589999998  5699999999999987764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.3e-14  Score=101.80  Aligned_cols=49  Identities=35%  Similarity=0.525  Sum_probs=44.1

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCccccccccc-cccccccccccceecc
Q 043612           13 KRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAG-LQRCGKSCRLRWINYL   61 (327)
Q Consensus        13 kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~-~gRt~~QCr~Rw~~~L   61 (327)
                      ++++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            578999999999999999999989999998743 2899999999998864

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2e-14  Score=100.16  Aligned_cols=44  Identities=23%  Similarity=0.641  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceec
Q 043612           16 LWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY   60 (327)
Q Consensus        16 ~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~   60 (327)
                      .||.|||++|+++|.+||.++|..||+.|+ +||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999999999999999 99999999999875

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=6.4e-14  Score=97.59  Aligned_cols=46  Identities=20%  Similarity=0.465  Sum_probs=43.4

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecc
Q 043612           14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL   61 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L   61 (327)
                      |++||+|||++|+++|++||. +|..||+.|+ |||+.||+.||.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHc
Confidence            579999999999999999996 5999999999 999999999998876

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.5e-13  Score=93.13  Aligned_cols=43  Identities=21%  Similarity=0.324  Sum_probs=40.5

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHhhhhhh
Q 043612           69 SFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKLMSHEI  111 (327)
Q Consensus        69 ~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~Rw~~i  111 (327)
                      .||.|||++|+++|++|| ++|..||+.|+|||+.|||.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999864

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.2e-13  Score=96.19  Aligned_cols=50  Identities=14%  Similarity=0.242  Sum_probs=45.1

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHhhhhhh
Q 043612           62 RPDLKRGSFSPQEAALIIELHSILGN----RWAQIARHLPGRTDNEKKLMSHEI  111 (327)
Q Consensus        62 ~p~lkkg~WT~EED~~Ll~lV~~~G~----kW~~IA~~lpgRT~~qcK~Rw~~i  111 (327)
                      .+...+++||.|||++|+++|.+||.    +|.+||..|||||+.||+.||+.|
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            34567789999999999999999995    499999999999999999999865

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=7.8e-13  Score=97.03  Aligned_cols=50  Identities=18%  Similarity=0.270  Sum_probs=45.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhccccc
Q 043612           67 RGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPALA  116 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k  116 (327)
                      ...||.|||++|+++|.+||.+|..||+.|++||..|||+||..+++...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~   51 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV   51 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999998776543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.29  E-value=1.1e-12  Score=96.06  Aligned_cols=49  Identities=27%  Similarity=0.419  Sum_probs=44.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHhhhhhhccccc
Q 043612           68 GSFSPQEAALIIELHSILGN----RWAQIARHLPGRTDNEKKLMSHEIVPALA  116 (327)
Q Consensus        68 g~WT~EED~~Ll~lV~~~G~----kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k  116 (327)
                      .+||.|||++|++++.+||.    +|.+||..|+|||..||++||..|+..++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik   54 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK   54 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence            47999999999999999995    49999999999999999999998877654

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=2e-12  Score=102.16  Aligned_cols=75  Identities=11%  Similarity=0.081  Sum_probs=66.2

Q ss_pred             ccccccccccccccceecccCCCCCCCCCHHHHHHHHHHHHHhCCC---HHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612           43 HAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNR---WAQIARHLPGRTDNEKKLMSHEIVPALASF  118 (327)
Q Consensus        43 ~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~lV~~~G~k---W~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~  118 (327)
                      .++ ..+..+...++.+..+.+.....||.|||++|++.++++|.+   |..||+.|+|||++|||+||+.|++...+.
T Consensus        10 ~~p-~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~~   87 (95)
T d1ug2a_          10 ALP-KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA   87 (95)
T ss_dssp             CCC-CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred             cCC-CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            445 567777888888888888888999999999999999999976   999999999999999999999998876544

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5e-13  Score=97.06  Aligned_cols=51  Identities=16%  Similarity=0.499  Sum_probs=46.4

Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHHhCCC---Ccccccccccccccccccccccee
Q 043612            8 NKQKVKRGLWSPEEDEKLINYVTTYGHG---CWSSVPKHAGLQRCGKSCRLRWIN   59 (327)
Q Consensus         8 ~K~k~kkg~WT~EEDe~L~~lV~kyg~~---nW~~IA~~l~~gRt~~QCr~Rw~~   59 (327)
                      .+++..+++||+|||++|+++|.+||.+   +|..||+.|+ +||+.||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            4567788999999999999999999976   4999999999 9999999999964

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.3e-13  Score=99.89  Aligned_cols=58  Identities=21%  Similarity=0.331  Sum_probs=51.6

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecccCCCCCCCCCHH
Q 043612           14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQ   73 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~lkkg~WT~E   73 (327)
                      ..+||+|||++|+++|..|| .+|..||+.|+ +||+.||+.||.+++.+..+.+.+...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            35799999999999999999 57999999999 999999999999999887777665543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.22  E-value=3.4e-12  Score=98.43  Aligned_cols=63  Identities=21%  Similarity=0.271  Sum_probs=50.0

Q ss_pred             CCCCHHHHHHHHHHHHHhC-CCHHHHHhh----CCCCCHHHHHhhhhhhcccccCCCccccCCCCccccCCCCCCCC
Q 043612           68 GSFSPQEAALIIELHSILG-NRWAQIARH----LPGRTDNEKKLMSHEIVPALASFPADFHNSLCPEEVGFFSLNTN  139 (327)
Q Consensus        68 g~WT~EED~~Ll~lV~~~G-~kW~~IA~~----lpgRT~~qcK~Rw~~ilr~~k~~~~r~~N~L~P~i~~~~wt~eE  139 (327)
                      .+||.|||+.|+++|.+|| ++|+.|++.    +++||+.|||+||+.+++...         ..|...+..|+++|
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~---------~~~~~~~~~~~p~e   68 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS---------IAPQQRRGEPVPQD   68 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH---------SCGGGCCSSCCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhc---------cCcccccCCCCCHH
Confidence            3899999999999999999 589999985    689999999999999876532         23444555665444

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.11  E-value=3.8e-12  Score=93.19  Aligned_cols=44  Identities=16%  Similarity=0.403  Sum_probs=40.9

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCC---cccccccccccccccccccccee
Q 043612           15 GLWSPEEDEKLINYVTTYGHGC---WSSVPKHAGLQRCGKSCRLRWIN   59 (327)
Q Consensus        15 g~WT~EEDe~L~~lV~kyg~~n---W~~IA~~l~~gRt~~QCr~Rw~~   59 (327)
                      .+||+|||++|+++|.+||.+.   |.+||..|+ +||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5799999999999999999764   999999999 9999999999954

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.2e-11  Score=87.80  Aligned_cols=48  Identities=10%  Similarity=0.134  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhccc
Q 043612           67 RGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVPA  114 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr~  114 (327)
                      ..+||+|||++|++++..||.+|..||+.|+|||..||++||....+.
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            357999999999999999999999999999999999999999876543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.8e-11  Score=88.31  Aligned_cols=48  Identities=21%  Similarity=0.044  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHhhhhhhcc
Q 043612           66 KRGSFSPQEAALIIELHSILGNRWAQIARHLPGRTDNEKKLMSHEIVP  113 (327)
Q Consensus        66 kkg~WT~EED~~Ll~lV~~~G~kW~~IA~~lpgRT~~qcK~Rw~~ilr  113 (327)
                      ...+||.|||++|++++.+||.+|..||..|+|||..||+++|....+
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~kk   63 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK   63 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHHC
Confidence            446899999999999999999999999999999999999999986543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.1e-10  Score=84.74  Aligned_cols=50  Identities=14%  Similarity=0.249  Sum_probs=44.8

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceec
Q 043612            9 KQKVKRGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINY   60 (327)
Q Consensus         9 K~k~kkg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~   60 (327)
                      +++....+||+|||++|++++.+||. +|..||+.|+ +||..||+.+|...
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLT   61 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTT-TSCHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            45566788999999999999999995 7999999999 99999999999754

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3.2e-10  Score=82.96  Aligned_cols=46  Identities=17%  Similarity=0.401  Sum_probs=42.4

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccceecc
Q 043612           14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGLQRCGKSCRLRWINYL   61 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~gRt~~QCr~Rw~~~L   61 (327)
                      ..+||+|||++|.+++..|| .+|..||+.|+ +||..||+.+|.+..
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~-~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR   50 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            46799999999999999999 46999999999 999999999998754

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=5.6e-09  Score=82.12  Aligned_cols=52  Identities=17%  Similarity=0.324  Sum_probs=45.7

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHhCCCC--ccccccccccccccccccccceecc
Q 043612            9 KQKVKRGLWSPEEDEKLINYVTTYGHGC--WSSVPKHAGLQRCGKSCRLRWINYL   61 (327)
Q Consensus         9 K~k~kkg~WT~EEDe~L~~lV~kyg~~n--W~~IA~~l~~gRt~~QCr~Rw~~~L   61 (327)
                      ++..+...||.|||+.|++.++++|...  |..||+.|+ +|++.|||.||..++
T Consensus        28 s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             CCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3556788999999999999999999644  999999999 999999999997643

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=7.3e-07  Score=64.19  Aligned_cols=50  Identities=14%  Similarity=0.321  Sum_probs=44.5

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHhhhhhhcccccCC
Q 043612           68 GSFSPQEAALIIELHSILG----NRWAQIARHLPGRTDNEKKLMSHEIVPALASF  118 (327)
Q Consensus        68 g~WT~EED~~Ll~lV~~~G----~kW~~IA~~lpgRT~~qcK~Rw~~ilr~~k~~  118 (327)
                      +.||.||+.+|.+++.+|.    .+|.+||..| |||..+|..||+.+...+...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~~~~~   55 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCS   55 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHhcccC
Confidence            4799999999999999996    4599999999 999999999999987766443

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=6.3e-06  Score=58.44  Aligned_cols=43  Identities=21%  Similarity=0.195  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCHHHHHhh-CCCCCHHHHHhhhhh
Q 043612           68 GSFSPQEAALIIELHSILGNRWAQIARH-LPGRTDNEKKLMSHE  110 (327)
Q Consensus        68 g~WT~EED~~Ll~lV~~~G~kW~~IA~~-lpgRT~~qcK~Rw~~  110 (327)
                      ..||+||-.++.+++..||.+|..|++. +++||..||.+.|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3699999999999999999999999985 699999999998764

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=4.9e-06  Score=59.73  Aligned_cols=45  Identities=16%  Similarity=0.337  Sum_probs=39.4

Q ss_pred             cCCCHHHHHHHHHHHHHhCCC---Cccccccccccccccccccccceecc
Q 043612           15 GLWSPEEDEKLINYVTTYGHG---CWSSVPKHAGLQRCGKSCRLRWINYL   61 (327)
Q Consensus        15 g~WT~EEDe~L~~lV~kyg~~---nW~~IA~~l~~gRt~~QCr~Rw~~~L   61 (327)
                      +.||.||+.+|.+++.+|..+   .|.+||+.++  |+..+|..||..+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            579999999999999999643   4999999995  99999999997543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=1.5e-05  Score=56.40  Aligned_cols=42  Identities=14%  Similarity=0.171  Sum_probs=37.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccc-ccccccccccccccee
Q 043612           16 LWSPEEDEKLINYVTTYGHGCWSSVPKH-AGLQRCGKSCRLRWIN   59 (327)
Q Consensus        16 ~WT~EEDe~L~~lV~kyg~~nW~~IA~~-l~~gRt~~QCr~Rw~~   59 (327)
                      .||+||-+++.+++..||. +|..|++. ++ +|+..||...|..
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~-~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            6999999999999999995 79999985 57 9999999998764

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00028  Score=50.29  Aligned_cols=47  Identities=13%  Similarity=0.155  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-------CC--HHHHHh-hCCCCCHHHHHhhhhhhcc
Q 043612           67 RGSFSPQEAALIIELHSILG-------NR--WAQIAR-HLPGRTDNEKKLMSHEIVP  113 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G-------~k--W~~IA~-~lpgRT~~qcK~Rw~~ilr  113 (327)
                      |.+||.|||+.|++.|.++.       ++  |.++++ .++.+|-.+.|+||.+.++
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999999874       12  999996 5899999999999987654

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00062  Score=45.79  Aligned_cols=45  Identities=22%  Similarity=0.427  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCHHHHHhhC---CCCCHHHHHhhhhhh
Q 043612           67 RGSFSPQEAALIIELHSILGNRWAQIARHL---PGRTDNEKKLMSHEI  111 (327)
Q Consensus        67 kg~WT~EED~~Ll~lV~~~G~kW~~IA~~l---pgRT~~qcK~Rw~~i  111 (327)
                      |..||+||-.-|...|+++|+.|..|--.+   +||+...+-.+|+.+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            347999999999999999999999998765   899999999888865

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00055  Score=48.71  Aligned_cols=48  Identities=23%  Similarity=0.421  Sum_probs=39.7

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCC------C--cccccc-ccccccccccccccceeccc
Q 043612           14 RGLWSPEEDEKLINYVTTYGHG------C--WSSVPK-HAGLQRCGKSCRLRWINYLR   62 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~------n--W~~IA~-~l~~gRt~~QCr~Rw~~~L~   62 (327)
                      |.+||.|||+.|++.|.++...      |  |+..++ .++ .+|..+-|+||.+.|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            5689999999999999998432      2  999885 566 8999999999988774

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.07  E-value=0.0047  Score=44.36  Aligned_cols=46  Identities=11%  Similarity=0.030  Sum_probs=37.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCH---HHHHhh--CCCCCHHHHHhhhhhh
Q 043612           66 KRGSFSPQEAALIIELHSILGNRW---AQIARH--LPGRTDNEKKLMSHEI  111 (327)
Q Consensus        66 kkg~WT~EED~~Ll~lV~~~G~kW---~~IA~~--lpgRT~~qcK~Rw~~i  111 (327)
                      .+-.||+||-++.++++..+|..|   ..|.+.  ++|+|..||+-+-...
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            356799999999999999999877   467766  5899999999665443

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.04  E-value=0.00096  Score=48.14  Aligned_cols=51  Identities=18%  Similarity=0.227  Sum_probs=38.4

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHhCCCCc--ccccccccc-ccccccccccceec
Q 043612           10 QKVKRGLWSPEEDEKLINYVTTYGHGCW--SSVPKHAGL-QRCGKSCRLRWINY   60 (327)
Q Consensus        10 ~k~kkg~WT~EEDe~L~~lV~kyg~~nW--~~IA~~l~~-gRt~~QCr~Rw~~~   60 (327)
                      ++..+-.||+||-+++..+|..+|.+.|  +.|.+.|+. ++|..|++.+.+++
T Consensus         3 ~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3455778999999999999999997544  466666542 67888888765544

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.011  Score=42.94  Aligned_cols=49  Identities=14%  Similarity=0.154  Sum_probs=42.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC----HHHHHhhCCCCCHHHHHhhhhhhcc
Q 043612           65 LKRGSFSPQEAALIIELHSILGNR----WAQIARHLPGRTDNEKKLMSHEIVP  113 (327)
Q Consensus        65 lkkg~WT~EED~~Ll~lV~~~G~k----W~~IA~~lpgRT~~qcK~Rw~~ilr  113 (327)
                      ...+.|+++|=++|-.++..+...    |..||..+..||+.+|...|+.-.+
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~   58 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcc
Confidence            345689999999999999998732    9999999999999999999987544

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0052  Score=44.77  Aligned_cols=52  Identities=23%  Similarity=0.452  Sum_probs=43.8

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccccceecccCC
Q 043612           12 VKRGLWSPEEDEKLINYVTTYGH---GCWSSVPKHAGLQRCGKSCRLRWINYLRPD   64 (327)
Q Consensus        12 ~kkg~WT~EEDe~L~~lV~kyg~---~nW~~IA~~l~~gRt~~QCr~Rw~~~L~p~   64 (327)
                      ..-+.|+++|=++|-.++.....   +=|..||..++ .|++..|..+|...+...
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCcccc
Confidence            34578999999999999998743   44999999999 999999999998765543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.14  E-value=0.011  Score=39.53  Aligned_cols=45  Identities=22%  Similarity=0.268  Sum_probs=36.4

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCcccccccccc--cccccccccccee
Q 043612           14 RGLWSPEEDEKLINYVTTYGHGCWSSVPKHAGL--QRCGKSCRLRWIN   59 (327)
Q Consensus        14 kg~WT~EEDe~L~~lV~kyg~~nW~~IA~~l~~--gRt~~QCr~Rw~~   59 (327)
                      |..||.||-.-|...|+++|. .|..|-=.++.  ||++.....+|.+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            467999999999999999996 59999765543  8888777776654

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.28  E-value=0.22  Score=39.88  Aligned_cols=52  Identities=13%  Similarity=0.296  Sum_probs=41.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CC---HHHHHhhC------------CCCCHHHHHhhhhhhccccc
Q 043612           65 LKRGSFSPQEAALIIELHSILG-NR---WAQIARHL------------PGRTDNEKKLMSHEIVPALA  116 (327)
Q Consensus        65 lkkg~WT~EED~~Ll~lV~~~G-~k---W~~IA~~l------------pgRT~~qcK~Rw~~ilr~~k  116 (327)
                      .++..+|.|||..|+-.+.+|| .+   |..|-..+            ..||+..+..|-..|++.+.
T Consensus        47 nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~  114 (128)
T d1ofcx2          47 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE  114 (128)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHH
Confidence            3455799999999999999999 45   88875432            57999999999888877654

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.22  E-value=0.8  Score=31.02  Aligned_cols=38  Identities=18%  Similarity=0.324  Sum_probs=35.0

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHh
Q 043612           69 SFSPQEAALIIELHSILG-NRWAQIARHLPGRTDNEKKL  106 (327)
Q Consensus        69 ~WT~EED~~Ll~lV~~~G-~kW~~IA~~lpgRT~~qcK~  106 (327)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|..+|+.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~   39 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIE   39 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHH
Confidence            499999999999999999 57999999999999999883