Citrus Sinensis ID: 043630

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MGRSAFLVAFAGFLLIVQVSLSQHEAAYSYRRNFITWDDLKVDWQKAWLDTRESVNRTRLIIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDIPDDSSGFSFVNCVINGTGKIYLGRAWGNYSRIIYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSWLKSLSYEEVQPFLNVTFIDGKEWLRL
cccHHHHHHHHHHHHHHHHcccccccHHHccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHcccccccEEEEEEEcEEEEEEEEEccccccEEEEEcccccccEEEEccccccccccccccccccccEEEEEEcccEEEEccEEEEccccccccccccEEEEEEcccEEEEEccEEEcccccEEcccccEEEEccEEEEEcEEEEccccEEEEccEEEEEccccEEEEEccccccccccEEEEEccEEEEccccccccccccccEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccHHHHcccccccEEcccccccc
ccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHccccccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccccEEEEEcccccccccccccEEEEEEEEEEEEcccEEEEEEEEEccccccccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccEEEEccccccccccEEEEEEEEEEcccccEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHcccccccccccccHHHHHHccHHHHcccccEEcc
MGRSAFLVAFAGFLLIVQVSLSQHEAAYSYRRNFITWDDLKVDWQKAWLDTRESVNRTRLiivdknggghsstvqgavdlvpennservkiyilpgvyrekvtvpqnkpyisfigheqRASETVISWHnkasdkdsngielgtyksaSVSVFADFFCATGITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGtqdtllddtgshyfyqCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIaahhrdipddssgfsfVNCVingtgkiylgrawgnYSRIIYSYSylediiyptgwsdwnmpyrdrtvvfgeyqcsgkgadrshrpswlkslsyeevqpflnvtfidgkewlrl
MGRSAFLVAFAGFLLIVQVSLSQHEAAYSYRRNFITWDDLKVDWQKAWLdtresvnrtrliivdknggghsstvqgavdlvpennseRVKIYIlpgvyrekvtvPQNKPYISFIGHEQRASETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDIPDDSSGFSFVNCVINGTgkiylgrawGNYSRIIYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSWLKSlsyeevqpflnvtfidgkewlrl
MGRSAFLVAFAGFLLIVQVSLSQHEAAYSYRRNFITWDDLKVDWQKAWLDTRESVNRTRLIIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDIPDDSSGFSFVNCVINGTGKIYLGRAWGNYSRIIYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSWLKSLSYEEVQPFLNVTFIDGKEWLRL
****AFLVAFAGFLLIVQVSLSQHEAAYSYRRNFITWDDLKVDWQKAWLDTRESVNRTRLIIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVISWHN********GIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDIPDDSSGFSFVNCVINGTGKIYLGRAWGNYSRIIYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGA****RPSWLKSLSYEEVQPFLNVTFIDGKEWL**
********AFAGFLLIVQ******************WDDLKV*************NRTRLIIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDIPDDSSGFSFVNCVINGTGKIYLGRAWGNYSRIIYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSWLKSLSYEEVQPFLNVTFIDGKEWLRL
MGRSAFLVAFAGFLLIVQVSLSQHEAAYSYRRNFITWDDLKVDWQKAWLDTRESVNRTRLIIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDIPDDSSGFSFVNCVINGTGKIYLGRAWGNYSRIIYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQC**********PSWLKSLSYEEVQPFLNVTFIDGKEWLRL
MGRSAFLVAFAGFLLIVQV****************T********QKAWLDTRESVNRTRLIIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDIPDDSSGFSFVNCVINGTGKIYLGRAWGNYSRIIYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSWLKSLSYEEVQPFLNVTFIDGKEWLRL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGRSAFLVAFAGFLLIVQVSLSQHEAAYSYRRNFITWDDLKVDWQKAWLDTRESVNRTRLIIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDIPDDSSGFSFVNCVINGTGKIYLGRAWGNYSRIIYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSWLKSLSYEEVQPFLNVTFIDGKEWLRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q9FM79380 Pectinesterase QRT1 OS=Ar yes no 0.986 0.931 0.565 1e-116
Q8LPF3362 Probable pectinesterase 6 no no 0.827 0.820 0.478 1e-81
Q8VYZ3383 Probable pectinesterase 5 no no 0.830 0.778 0.458 5e-78
O23038393 Probable pectinesterase 8 no no 0.832 0.760 0.443 6e-71
Q9ZQA3407 Probable pectinesterase 1 no no 0.832 0.734 0.447 1e-68
Q9SIJ9352 Putative pectinesterase 1 no no 0.785 0.801 0.421 2e-65
Q9ZQA4333 Putative pectinesterase 1 no no 0.813 0.876 0.435 5e-64
Q9LY18361 Probable pectinesterase 4 no no 0.807 0.803 0.38 9e-60
Q84WM7361 Pectinesterase PPME1 OS=A no no 0.805 0.800 0.382 2e-58
Q9LSP1344 Probable pectinesterase 6 no no 0.810 0.845 0.376 3e-58
>sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  417 bits (1071), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/373 (56%), Positives = 271/373 (72%), Gaps = 19/373 (5%)

Query: 5   AFLVAFAGFLLIVQVSLSQHEAAYSYRRNFITWDDLKVDWQKAWLDTRESVNRT------ 58
           A L+   G +L ++ S +      +  +N+I+W+DL+V  +   ++   S+         
Sbjct: 9   AVLLLCFGVMLCLKSSCALQIGNNNELKNYISWEDLRV-VEDGRIERSFSIKENSNWVTT 67

Query: 59  ------------RLIIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQ 106
                       R+I+VDKNGGG S TVQGAVD+VP++NS+RVKI+ILPG+YREKV VP+
Sbjct: 68  NANANANATNVRRVIVVDKNGGGDSVTVQGAVDMVPDSNSQRVKIFILPGIYREKVIVPK 127

Query: 107 NKPYISFIGHEQRASETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANT 166
           +KPYISFIG+E  A +TVISW +KASD   +G ELGTY++ASVS+ +DFFCAT ITF NT
Sbjct: 128 SKPYISFIGNESYAGDTVISWSDKASDLGCDGKELGTYRTASVSIESDFFCATAITFENT 187

Query: 167 VVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGR 226
           VVA  G  G QAVALR+ GDKA+ Y+V+VLG+QDTL DD GSHYFYQC+IQG++DFIFG 
Sbjct: 188 VVAEAGEQGRQAVALRIIGDKAVFYRVRVLGSQDTLFDDNGSHYFYQCYIQGNVDFIFGN 247

Query: 227 ARSLYQDCVLQSIAEKSGAIAAHHRDIPDDSSGFSFVNCVINGTGKIYLGRAWGNYSRII 286
           A+SLYQDC + S A++ GAIAAHHRD   + +GFSFVNC I+GTG+IYLGRAWGNYSR +
Sbjct: 248 AKSLYQDCDIHSTAKRYGAIAAHHRDSETEDTGFSFVNCDISGTGQIYLGRAWGNYSRTV 307

Query: 287 YSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSWLKSLSYEEVQPFL 346
           YS  ++ DII P GWSDW  P R R V+FGEY C G+GA+R  R  W K+L+ +EV+PFL
Sbjct: 308 YSNCFIADIITPVGWSDWKHPERQRKVMFGEYNCRGRGAERGGRVPWSKTLTRDEVKPFL 367

Query: 347 NVTFIDGKEWLRL 359
              FI G +WLRL
Sbjct: 368 GREFIYGDQWLRL 380
Pectinesterase required for cell type-specific pectin degradation to separate microspores.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8LPF3|PME68_ARATH Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1 Back     alignment and function description
>sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1 Back     alignment and function description
>sp|O23038|PME8_ARATH Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZQA3|PME15_ARATH Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIJ9|PME11_ARATH Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZQA4|PME14_ARATH Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1 Back     alignment and function description
>sp|Q9LY18|PME49_ARATH Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1 Back     alignment and function description
>sp|Q84WM7|PPME1_ARATH Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LSP1|PME67_ARATH Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
255563450383 Pectinesterase U1 precursor, putative [R 0.977 0.916 0.671 1e-142
224056439318 predicted protein [Populus trichocarpa] 0.871 0.984 0.686 1e-130
449517687330 PREDICTED: pectinesterase QRT1-like, par 0.913 0.993 0.633 1e-124
449465166359 PREDICTED: pectinesterase QRT1-like [Cuc 0.905 0.905 0.636 1e-123
356552622363 PREDICTED: pectinesterase QRT1-like [Gly 0.977 0.966 0.583 1e-120
225461870359 PREDICTED: pectinesterase QRT1 [Vitis vi 1.0 1.0 0.582 1e-118
356499437356 PREDICTED: pectinesterase QRT1-like [Gly 0.905 0.912 0.597 1e-118
15240544380 pectinesterase QRT1 [Arabidopsis thalian 0.986 0.931 0.565 1e-114
357495001359 Pectinesterase [Medicago truncatula] gi| 0.913 0.913 0.612 1e-112
297793031381 hypothetical protein ARALYDRAFT_495646 [ 0.913 0.860 0.597 1e-112
>gi|255563450|ref|XP_002522727.1| Pectinesterase U1 precursor, putative [Ricinus communis] gi|223537965|gb|EEF39578.1| Pectinesterase U1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 237/353 (67%), Positives = 290/353 (82%), Gaps = 2/353 (0%)

Query: 7   LVAFAGFLLIVQVSLSQHEAAYSYRRNFITWDDLKVDWQKAWLDTRESVNRTRLIIVDKN 66
           +V +  FL   QV  SQ  +     ++FI+WDD+KVD  KA L++R   NR+R+I+VD+N
Sbjct: 33  VVVYICFLGSFQVVFSQ--SGVVNMKDFISWDDMKVDEDKAKLNSRYDYNRSRIIVVDRN 90

Query: 67  GGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVIS 126
           G G S TVQGA+D+VPE+N  RVKIYILPG+YREKV VP  KPYISFIG E + ++TVI+
Sbjct: 91  GEGDSLTVQGAIDMVPESNPHRVKIYILPGIYREKVLVPSTKPYISFIGKESQCADTVIT 150

Query: 127 WHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVALRLAGD 186
           W+NKASD DSNG+ELGTY+SASV++ +D+FCATG+TF NTVVA PGG GMQAVALR++GD
Sbjct: 151 WNNKASDMDSNGVELGTYRSASVTIESDYFCATGVTFENTVVAEPGGYGMQAVALRVSGD 210

Query: 187 KAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAI 246
           KA  +KV++LGTQDTLLD+TGSH+FYQCHIQGS+DFIFG+ RSL+QDCVLQS A++SGAI
Sbjct: 211 KAFFHKVRILGTQDTLLDETGSHFFYQCHIQGSVDFIFGKGRSLFQDCVLQSTAKRSGAI 270

Query: 247 AAHHRDIPDDSSGFSFVNCVINGTGKIYLGRAWGNYSRIIYSYSYLEDIIYPTGWSDWNM 306
           AAHHRD P D SGFSFV CVINGTGKI LGRAWGNYSR IYSY +++D+I P GWSDWN 
Sbjct: 271 AAHHRDTPFDDSGFSFVGCVINGTGKILLGRAWGNYSRAIYSYCFIDDVITPPGWSDWNY 330

Query: 307 PYRDRTVVFGEYQCSGKGADRSHRPSWLKSLSYEEVQPFLNVTFIDGKEWLRL 359
           P R +TV FGEY+CSG+GAD   R  W K+ SYEEV+PFL++ FI+G EWLRL
Sbjct: 331 PDRQKTVFFGEYECSGRGADTGGRVPWSKTFSYEEVRPFLDMQFINGDEWLRL 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056439|ref|XP_002298857.1| predicted protein [Populus trichocarpa] gi|222846115|gb|EEE83662.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449517687|ref|XP_004165876.1| PREDICTED: pectinesterase QRT1-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449465166|ref|XP_004150299.1| PREDICTED: pectinesterase QRT1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356552622|ref|XP_003544663.1| PREDICTED: pectinesterase QRT1-like [Glycine max] Back     alignment and taxonomy information
>gi|225461870|ref|XP_002264297.1| PREDICTED: pectinesterase QRT1 [Vitis vinifera] gi|147798523|emb|CAN74384.1| hypothetical protein VITISV_023802 [Vitis vinifera] gi|296089889|emb|CBI39708.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499437|ref|XP_003518547.1| PREDICTED: pectinesterase QRT1-like [Glycine max] Back     alignment and taxonomy information
>gi|15240544|ref|NP_200370.1| pectinesterase QRT1 [Arabidopsis thaliana] gi|75171621|sp|Q9FM79.1|PME62_ARATH RecName: Full=Pectinesterase QRT1; Short=AtQRT1; Short=PE QRT1; AltName: Full=Pectin methylesterase 62; Short=AtPME62; AltName: Full=Pectin methylesterase QRT1; AltName: Full=Protein QUARTET 1; Flags: Precursor gi|9758593|dbj|BAB09226.1| unnamed protein product [Arabidopsis thaliana] gi|115490609|gb|ABI97858.1| quartet1 [Arabidopsis thaliana] gi|332009270|gb|AED96653.1| pectinesterase QRT1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357495001|ref|XP_003617789.1| Pectinesterase [Medicago truncatula] gi|355519124|gb|AET00748.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297793031|ref|XP_002864400.1| hypothetical protein ARALYDRAFT_495646 [Arabidopsis lyrata subsp. lyrata] gi|297310235|gb|EFH40659.1| hypothetical protein ARALYDRAFT_495646 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
TAIR|locus:2162102380 QRT1 "QUARTET 1" [Arabidopsis 0.869 0.821 0.637 1.6e-113
TAIR|locus:2169023362 PME5 "pectin methylesterase 5" 0.827 0.820 0.478 5.5e-77
TAIR|locus:2183214383 AT5G19730 [Arabidopsis thalian 0.830 0.778 0.458 8.4e-74
TAIR|locus:2207245393 AT1G05310 [Arabidopsis thalian 0.816 0.745 0.448 7.4e-66
TAIR|locus:2040535407 AT2G36710 [Arabidopsis thalian 0.844 0.744 0.452 1.1e-64
TAIR|locus:2040525333 AT2G36700 [Arabidopsis thalian 0.813 0.876 0.442 3.4e-61
TAIR|locus:2183349361 AT5G07420 [Arabidopsis thalian 0.805 0.800 0.385 2.2e-57
TAIR|locus:2196805361 PPME1 [Arabidopsis thaliana (t 0.805 0.800 0.382 3.3e-56
TAIR|locus:2183364361 AT5G07430 [Arabidopsis thalian 0.944 0.939 0.35 5.3e-56
TAIR|locus:2183334361 AT5G07410 [Arabidopsis thalian 0.805 0.800 0.382 1.8e-55
TAIR|locus:2162102 QRT1 "QUARTET 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1089 (388.4 bits), Expect = 1.6e-113, Sum P(2) = 1.6e-113
 Identities = 202/317 (63%), Positives = 249/317 (78%)

Query:    48 WLDTRESVNRT-----RLIIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKV 102
             W+ T  + N       R+I+VDKNGGG S TVQGAVD+VP++NS+RVKI+ILPG+YREKV
Sbjct:    64 WVTTNANANANATNVRRVIVVDKNGGGDSVTVQGAVDMVPDSNSQRVKIFILPGIYREKV 123

Query:   103 TVPQNKPYISFIGHEQRASETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGIT 162
              VP++KPYISFIG+E  A +TVISW +KASD   +G ELGTY++ASVS+ +DFFCAT IT
Sbjct:   124 IVPKSKPYISFIGNESYAGDTVISWSDKASDLGCDGKELGTYRTASVSIESDFFCATAIT 183

Query:   163 FANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDF 222
             F NTVVA  G  G QAVALR+ GDKA+ Y+V+VLG+QDTL DD GSHYFYQC+IQG++DF
Sbjct:   184 FENTVVAEAGEQGRQAVALRIIGDKAVFYRVRVLGSQDTLFDDNGSHYFYQCYIQGNVDF 243

Query:   223 IFGRARSLYQDCVLQSIAEKSGAIAAHHRDIPDDSSGFSFVNCVINGTGKIYLGRAWGNY 282
             IFG A+SLYQDC + S A++ GAIAAHHRD   + +GFSFVNC I+GTG+IYLGRAWGNY
Sbjct:   244 IFGNAKSLYQDCDIHSTAKRYGAIAAHHRDSETEDTGFSFVNCDISGTGQIYLGRAWGNY 303

Query:   283 SRIIYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSWLKSLSYEEV 342
             SR +YS  ++ DII P GWSDW  P R R V+FGEY C G+GA+R  R  W K+L+ +EV
Sbjct:   304 SRTVYSNCFIADIITPVGWSDWKHPERQRKVMFGEYNCRGRGAERGGRVPWSKTLTRDEV 363

Query:   343 QPFLNVTFIDGKEWLRL 359
             +PFL   FI G +WLRL
Sbjct:   364 KPFLGREFIYGDQWLRL 380
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS;IDA
GO:0042545 "cell wall modification" evidence=IEA
GO:0045490 "pectin catabolic process" evidence=IMP
TAIR|locus:2169023 PME5 "pectin methylesterase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183214 AT5G19730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207245 AT1G05310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040535 AT2G36710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040525 AT2G36700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183349 AT5G07420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196805 PPME1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183364 AT5G07430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183334 AT5G07410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FM79PME62_ARATH3, ., 1, ., 1, ., 1, 10.56560.98600.9315yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.946
3rd Layer3.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_I002863
pectinesterase family protein (EC-3.1.1.11) (318 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
PLN02671359 PLN02671, PLN02671, pectinesterase 0.0
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-121
PLN02634359 PLN02634, PLN02634, probable pectinesterase 1e-115
PLN02304379 PLN02304, PLN02304, probable pectinesterase 1e-108
PLN02432293 PLN02432, PLN02432, putative pectinesterase 1e-103
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 1e-102
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 7e-84
PLN02497331 PLN02497, PLN02497, probable pectinesterase 9e-82
PLN02773317 PLN02773, PLN02773, pectinesterase 1e-78
PLN02176340 PLN02176, PLN02176, putative pectinesterase 5e-75
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-71
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-62
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 3e-53
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-52
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 4e-50
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 3e-49
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 4e-49
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 7e-49
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 3e-48
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 5e-47
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 6e-47
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 9e-47
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-46
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 3e-46
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 3e-44
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 5e-44
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 9e-44
PLN02314586 PLN02314, PLN02314, pectinesterase 6e-42
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 7e-41
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 2e-40
PLN02197588 PLN02197, PLN02197, pectinesterase 1e-37
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 1e-35
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 6e-35
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 4e-29
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information 
 Score =  566 bits (1461), Expect = 0.0
 Identities = 233/328 (71%), Positives = 280/328 (85%)

Query: 32  RNFITWDDLKVDWQKAWLDTRESVNRTRLIIVDKNGGGHSSTVQGAVDLVPENNSERVKI 91
           +NFI+W+DL+V    A L ++   N +R+I+VDKNGGG S TVQGAVD+VP+ NS+RVKI
Sbjct: 32  KNFISWEDLRVVEDGALLASKYDTNVSRVIVVDKNGGGDSLTVQGAVDMVPDYNSQRVKI 91

Query: 92  YILPGVYREKVTVPQNKPYISFIGHEQRASETVISWHNKASDKDSNGIELGTYKSASVSV 151
           YILPG+YREKV VP++KPYISFIG+E RA +TVISW++KASD DSNG ELGTY++ASV++
Sbjct: 92  YILPGIYREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVTI 151

Query: 152 FADFFCATGITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYF 211
            +D+FCATGITF NTVVA PGG GMQAVALR++GDKA  YKV+VLG QDTLLD+TGSHYF
Sbjct: 152 ESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDETGSHYF 211

Query: 212 YQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDIPDDSSGFSFVNCVINGTG 271
           YQC+IQGS+DFIFG A+SLYQDCV+QS A++SGAIAAHHRD P + +GFSFVNCVINGTG
Sbjct: 212 YQCYIQGSVDFIFGNAKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVINGTG 271

Query: 272 KIYLGRAWGNYSRIIYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRP 331
           KIYLGRAWGNYSR +YS  ++ DII P+GWSDWN P R RTV+FGEY CSG+GADR  R 
Sbjct: 272 KIYLGRAWGNYSRTVYSNCFIADIITPSGWSDWNYPERQRTVMFGEYNCSGRGADRGGRV 331

Query: 332 SWLKSLSYEEVQPFLNVTFIDGKEWLRL 359
            W K+LSYEEV+PFL+  FI G +WLRL
Sbjct: 332 PWSKTLSYEEVRPFLDREFIYGDQWLRL 359

Length = 359
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
PLN02671359 pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02304379 probable pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PLN02773317 pectinesterase 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.4
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.25
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.74
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.47
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.13
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.1
KOG1777 625 consensus Putative Zn-finger protein [General func 97.48
PLN02682369 pectinesterase family protein 97.42
PLN02793443 Probable polygalacturonase 97.28
PLN02773317 pectinesterase 97.25
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.18
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.12
PLN02480343 Probable pectinesterase 97.02
PLN02497331 probable pectinesterase 97.01
PLN03010409 polygalacturonase 96.98
PLN02665366 pectinesterase family protein 96.87
PLN02634359 probable pectinesterase 96.8
PLN02218431 polygalacturonase ADPG 96.75
PLN02155394 polygalacturonase 96.62
PRK10531422 acyl-CoA thioesterase; Provisional 96.55
PLN02916502 pectinesterase family protein 96.48
PLN02432293 putative pectinesterase 96.47
PLN02671359 pectinesterase 96.4
PLN02197588 pectinesterase 96.38
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 96.32
PLN02176340 putative pectinesterase 96.3
PLN02201520 probable pectinesterase/pectinesterase inhibitor 96.3
PLN02170529 probable pectinesterase/pectinesterase inhibitor 96.29
PLN03003 456 Probable polygalacturonase At3g15720 96.27
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 96.26
PLN02304379 probable pectinesterase 96.26
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.24
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 96.18
PLN02416541 probable pectinesterase/pectinesterase inhibitor 96.05
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 95.97
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.89
smart00656190 Amb_all Amb_all domain. 95.87
PLN02506537 putative pectinesterase/pectinesterase inhibitor 95.86
PLN02488509 probable pectinesterase/pectinesterase inhibitor 95.78
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.73
PLN02314586 pectinesterase 95.7
PLN02313587 Pectinesterase/pectinesterase inhibitor 95.69
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.62
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.61
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 95.52
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.43
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 95.38
PLN02468565 putative pectinesterase/pectinesterase inhibitor 95.32
PLN02301548 pectinesterase/pectinesterase inhibitor 95.29
PLN02484587 probable pectinesterase/pectinesterase inhibitor 94.61
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 94.36
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 93.74
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 93.6
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 92.58
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 92.56
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 92.05
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 90.52
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 86.85
PLN02188404 polygalacturonase/glycoside hydrolase family prote 85.33
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 84.45
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 83.34
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 81.08
>PLN02671 pectinesterase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-100  Score=749.20  Aligned_cols=334  Identities=70%  Similarity=1.206  Sum_probs=311.6

Q ss_pred             hcccccCCccccCCcccccccccccCccccCCcceEEEcCCCCcCcccHHHHHhcCCCCCCceEEEEEeCceEeeeeeeC
Q 043630           26 AAYSYRRNFITWDDLKVDWQKAWLDTRESVNRTRLIIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVP  105 (359)
Q Consensus        26 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivV~~~g~g~f~TIQ~Avdaap~~~~~~~~I~I~pG~Y~E~V~I~  105 (359)
                      ..+-...+|++|.+....+|+.-..+..+....++|+|+++|+|+|+|||+|||++|+++++|++|+|+||+|+|+|+||
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Va~dGsGdf~TIQ~AIdavP~~~~~~~~I~Ik~GvY~EkV~I~  105 (359)
T PLN02671         26 IGNNDLKNFISWEDLRVVEDGALLASKYDTNVSRVIVVDKNGGGDSLTVQGAVDMVPDYNSQRVKIYILPGIYREKVLVP  105 (359)
T ss_pred             hcccccccCCchhhhhhhcccceeccccccCCceeEEECCCCCCCccCHHHHHHhchhcCCccEEEEEeCceEEEEEEEC
Confidence            34566889999999988877654444444467889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeEEeecCCCCCccEEEeccCCCCCCCCCccccccceeEEEEEcCcEEEEceEEeeccccCCCCCCCceEEEEEec
Q 043630          106 QNKPYISFIGHEQRASETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVALRLAG  185 (359)
Q Consensus       106 ~~kp~ItL~G~~~~~~~tvI~~~~~~~~~~~~g~~~~t~~satv~v~a~~f~~~nLTi~Nt~~~~~g~~~~QAvAL~v~g  185 (359)
                      ++||+|||+|++..+++|||+|+..+.+.+++|..++|++|+||.|.+++|+++||||+|++...+|..++|||||+++|
T Consensus       106 ~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~g  185 (359)
T PLN02671        106 KSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISG  185 (359)
T ss_pred             CCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcC
Confidence            99999999999854689999999998888888888999999999999999999999999997654566678999999999


Q ss_pred             CccEEEeeeeeCCcceeecCCCceEEeecEEeccceEEecCceeEEEeeEEEeeCCCceEEEeecCCCCCCCceEEEEee
Q 043630          186 DKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDIPDDSSGFSFVNC  265 (359)
Q Consensus       186 d~~~~~nc~~~g~QDTL~~~~gr~yf~~c~IeG~vDfIfG~g~a~fe~c~i~~~~~~~g~I~A~~r~~~~~~~G~vf~~c  265 (359)
                      ||++|+||+|+|||||||++.|||||++|||||+||||||+|+++||+|+|+++.+..|+||||+|+++.+++||||.||
T Consensus       186 Dra~f~~c~f~G~QDTLy~~~gR~yf~~CyIeG~VDFIFG~g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C  265 (359)
T PLN02671        186 DKAFFYKVRVLGAQDTLLDETGSHYFYQCYIQGSVDFIFGNAKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNC  265 (359)
T ss_pred             ccEEEEcceEeccccccEeCCCcEEEEecEEEEeccEEecceeEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999877679999999988889999999999


Q ss_pred             EEeeeceEEeceeecccceEEEEccccCccccCCCCCCCCCCCCCcccEEEEeccccCCCCCCCCCccccCCCHHHHcCc
Q 043630          266 VINGTGKIYLGRAWGNYSRIIYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSWLKSLSYEEVQPF  345 (359)
Q Consensus       266 ~it~~~~~yLGRpW~~~s~vv~~~~~~~~~i~p~GW~~w~~~~~~~t~~f~EY~~~GpGa~~~~rv~w~~~Lt~~ea~~~  345 (359)
                      +|++++++||||||++||+|||++|+|+++|.|+||.+|+.+.+.++++|+||+|+|||+++++||+|+++|+++||++|
T Consensus       266 ~itg~g~vyLGRPW~~yarvVf~~t~m~~~I~p~GW~~w~~~~~~~t~~faEy~~~GpGa~~s~Rv~ws~~Lt~~ea~~f  345 (359)
T PLN02671        266 VINGTGKIYLGRAWGNYSRTVYSNCFIADIITPSGWSDWNYPERQRTVMFGEYNCSGRGADRGGRVPWSKTLSYEEVRPF  345 (359)
T ss_pred             EEccCccEEEeCCCCCCceEEEEecccCCeEcCCCccCCCCCCCCCceEEEEEcccCCCCCcCCCccccccCCHHHHHhh
Confidence            99999999999999999999999999999999999999998877899999999999999999999999999999999999


Q ss_pred             cccceecCCCCCCC
Q 043630          346 LNVTFIDGKEWLRL  359 (359)
Q Consensus       346 ~~~~fi~g~~W~~~  359 (359)
                      +..+||+|++|||+
T Consensus       346 ~~~~fi~g~~Wl~~  359 (359)
T PLN02671        346 LDREFIYGDQWLRL  359 (359)
T ss_pred             hHhhccCCCCCCCC
Confidence            99999999999986

>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 6e-41
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 5e-33
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 1e-12
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 2e-11
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 2e-11
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 2e-10
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  164 bits (416), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 152/313 (48%), Gaps = 27/313 (8%)
Query: 61  IIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRA 120
           ++V  +G G   TV  AV   PE++  R  I I  GVYRE V VP+ K  I F+G  +  
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGR-- 66
Query: 121 SETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVA 180
           + T+I+      D  +      T+ SA+V+     F A  ITF NT     G    QAVA
Sbjct: 67  TSTIITASKNVQDGST------TFNSATVAAVGAGFLARDITFQNTA----GAAKHQAVA 116
Query: 181 LRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIA 240
           LR+  D +  Y+  +L  QD+L   +   +F  C I G++DFIFG A  + QDC + +  
Sbjct: 117 LRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARR 176
Query: 241 EKSG---AIAAHHRDIPDDSSGFSFVNCVINGTGKI---------YLGRAWGNYSRIIYS 288
             SG    + A  R  P+ ++G       I  T  +         YLGR W  YSR +  
Sbjct: 177 PGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVM 236
Query: 289 YSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSW--LKSL-SYEEVQPF 345
            S + ++I P GW  W+  +   T+ +GEYQ +G GA  S R +W   K + S  E Q F
Sbjct: 237 QSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGF 296
Query: 346 LNVTFIDGKEWLR 358
              +FI G  WL+
Sbjct: 297 TPGSFIAGGSWLK 309
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-118
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-117
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-100
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-100
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-86
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  344 bits (885), Expect = e-118
 Identities = 107/321 (33%), Positives = 148/321 (46%), Gaps = 27/321 (8%)

Query: 53  ESVNRTRLIIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYIS 112
           ES      ++V  +G G   TV  AV   PE++  R  I I  GVYRE V VP+ K  I 
Sbjct: 1   ESSTVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIM 60

Query: 113 FIGHEQRASETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPG 172
           F+G     + T+I+      D         T+ SA+V+     F A  ITF NT     G
Sbjct: 61  FLG--DGRTSTIITASKNVQDGS------TTFNSATVAAVGAGFLARDITFQNTA----G 108

Query: 173 GIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQ 232
               QAVALR+  D +  Y+  +L  QD+L   +   +F  C I G++DFIFG A  + Q
Sbjct: 109 AAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQ 168

Query: 233 DCVLQSIAEKS---GAIAAHHRDIPDDSSGFSFVNCVINGTG---------KIYLGRAWG 280
           DC + +    S     + A  R  P+ ++G       I  T            YLGR W 
Sbjct: 169 DCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWK 228

Query: 281 NYSRIIYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSW---LKSL 337
            YSR +   S + ++I P GW  W+  +   T+ +GEYQ +G GA  S R +W       
Sbjct: 229 EYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVIT 288

Query: 338 SYEEVQPFLNVTFIDGKEWLR 358
           S  E Q F   +FI G  WL+
Sbjct: 289 SSTEAQGFTPGSFIAGGSWLK 309
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.62
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.51
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.77
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.23
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.78
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.75
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.67
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.65
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.65
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.65
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.63
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.63
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.54
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.53
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.41
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.29
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.25
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.19
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.11
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.05
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.82
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.73
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.59
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.54
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.45
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.39
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.31
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.29
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.17
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.81
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 95.73
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.58
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 95.4
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.11
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 94.79
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 94.23
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 94.14
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 92.8
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 89.32
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 88.95
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 87.56
1vcl_A432 Hemolytic lectin CEL-III; hemolysis, hemagglutinat 86.98
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 86.49
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 85.73
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 84.16
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 83.66
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 82.28
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 81.14
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=4.8e-88  Score=655.97  Aligned_cols=290  Identities=30%  Similarity=0.565  Sum_probs=271.8

Q ss_pred             cceEEEcCCCCcCcccHHHHHhcCCCCCCceEEEEEeCceEeeeeeeCCCCCCeEEeecCCCCCccEEEeccCCCCCCCC
Q 043630           58 TRLIIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVISWHNKASDKDSN  137 (359)
Q Consensus        58 ~~~ivV~~~g~g~f~TIQ~Avdaap~~~~~~~~I~I~pG~Y~E~V~I~~~kp~ItL~G~~~~~~~tvI~~~~~~~~~~~~  137 (359)
                      +++|+|+++|+|+|+|||+|||++|+++++|++|+|+||+|+|+|.||+.||+|||+|++  +++|+|+++....    +
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g--~~~tiI~~~~~~~----~   75 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDG--MYATTITGSLNVV----D   75 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESC--TTTEEEEECCCTT----T
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcC--CCCcEEEeccccc----C
Confidence            358999999999999999999999999999999999999999999999999999999999  8999999987542    1


Q ss_pred             CccccccceeEEEEEcCcEEEEceEEeeccccCCCCCCCceEEEEEecCccEEEeeeeeCCcceeecCCCceEEeecEEe
Q 043630          138 GIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQ  217 (359)
Q Consensus       138 g~~~~t~~satv~v~a~~f~~~nLTi~Nt~~~~~g~~~~QAvAL~v~gd~~~~~nc~~~g~QDTL~~~~gr~yf~~c~Ie  217 (359)
                        .++|++++||.|.+++|+++||||+|++    |..++||+||++++|+++|+||+|+|+|||||++.+||||++|+|+
T Consensus        76 --g~~t~~satv~v~a~~f~~~~lt~~Nt~----g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~  149 (317)
T 1xg2_A           76 --GSTTFRSATLAAVGQGFILQDICIQNTA----GPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVT  149 (317)
T ss_dssp             --TCCSGGGCSEEECSTTCEEESCEEEECC----CGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEE
T ss_pred             --CCcccceeEEEEECCCEEEEEeEEeccc----CCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEE
Confidence              3678999999999999999999999996    4566799999999999999999999999999999999999999999


Q ss_pred             ccceEEecCceeEEEeeEEEeeCC---CceEEEeecCCCCCCCceEEEEeeEEeeec---------eEEeceeecccceE
Q 043630          218 GSIDFIFGRARSLYQDCVLQSIAE---KSGAIAAHHRDIPDDSSGFSFVNCVINGTG---------KIYLGRAWGNYSRI  285 (359)
Q Consensus       218 G~vDfIfG~g~a~fe~c~i~~~~~---~~g~I~A~~r~~~~~~~G~vf~~c~it~~~---------~~yLGRpW~~~s~v  285 (359)
                      |+||||||+++++||+|+|+++..   ..++||||+|+++++++||||+||+|++++         ++||||||++|+|+
T Consensus       150 G~vDFIfG~~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~  229 (317)
T 1xg2_A          150 GTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRT  229 (317)
T ss_dssp             ESSSCEEECCEEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEE
T ss_pred             eceeEEcCCceEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceE
Confidence            999999999999999999999863   458999999999999999999999999864         79999999999999


Q ss_pred             EEEccccCccccCCCCCCCCCCCCCcccEEEEeccccCCCCCCCCCcccc--CC-CHHHHcCccccceecCCCCCCC
Q 043630          286 IYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSWLK--SL-SYEEVQPFLNVTFIDGKEWLRL  359 (359)
Q Consensus       286 v~~~~~~~~~i~p~GW~~w~~~~~~~t~~f~EY~~~GpGa~~~~rv~w~~--~L-t~~ea~~~~~~~fi~g~~W~~~  359 (359)
                      ||++|+|+++|+|+||.+|++..+.++++|+||+|+|||+++++||+|++  +| +++||++|+..+||+|++|+|.
T Consensus       230 v~~~t~~~~~I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~  306 (317)
T 1xg2_A          230 VVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRS  306 (317)
T ss_dssp             EEESCEECTTBCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGG
T ss_pred             EEEecccCCcccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCC
Confidence            99999999999999999999988889999999999999999999999996  56 5699999999999999999873
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination, pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A* 2z49_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 359
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-102
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 6e-72
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  301 bits (773), Expect = e-102
 Identities = 106/312 (33%), Positives = 146/312 (46%), Gaps = 27/312 (8%)

Query: 61  IIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRA 120
           ++V  +G G   TV  AV   PE++  R  I I  GVYRE V VP+ K  I F+G     
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLG--DGR 66

Query: 121 SETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVA 180
           + T+I+      D         T+ SA+V+     F A  ITF NT     G    QAVA
Sbjct: 67  TSTIITASKNVQDG------STTFNSATVAAVGAGFLARDITFQNTA----GAAKHQAVA 116

Query: 181 LRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIA 240
           LR+  D +  Y+  +L  QD+L   +   +F  C I G++DFIFG A  + QDC + +  
Sbjct: 117 LRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARR 176

Query: 241 EKSG---AIAAHHRDIPDDSSGFSFVNCVINGTG---------KIYLGRAWGNYSRIIYS 288
             SG    + A  R  P+ ++G       I  T            YLGR W  YSR +  
Sbjct: 177 PGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVM 236

Query: 289 YSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSW---LKSLSYEEVQPF 345
            S + ++I P GW  W+  +   T+ +GEYQ +G GA  S R +W       S  E Q F
Sbjct: 237 QSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGF 296

Query: 346 LNVTFIDGKEWL 357
              +FI G  WL
Sbjct: 297 TPGSFIAGGSWL 308
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.2
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.85
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.25
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.59
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.38
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.21
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 96.87
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 96.69
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.46
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.44
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.4
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.11
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.08
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.83
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.65
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.08
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.28
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 93.45
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 88.95
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 88.23
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 86.11
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 83.69
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=2.1e-92  Score=683.12  Aligned_cols=290  Identities=36%  Similarity=0.624  Sum_probs=273.0

Q ss_pred             CcceEEEcCCCCcCcccHHHHHhcCCCCCCceEEEEEeCceEeeeeeeCCCCCCeEEeecCCCCCccEEEeccCCCCCCC
Q 043630           57 RTRLIIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVISWHNKASDKDS  136 (359)
Q Consensus        57 ~~~~ivV~~~g~g~f~TIQ~Avdaap~~~~~~~~I~I~pG~Y~E~V~I~~~kp~ItL~G~~~~~~~tvI~~~~~~~~~~~  136 (359)
                      ..++|+|++||+|||+|||+|||++|+++++|++|+|+||+|+|+|+||++||+|||+|++  ++.|+|+++.++..   
T Consensus         5 ~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g--~~~tiIt~~~~~~~---   79 (319)
T d1gq8a_           5 VGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDG--RTSTIITASKNVQD---   79 (319)
T ss_dssp             SCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESC--TTTEEEEECCCTTT---
T ss_pred             CCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcC--CCCcEEEecccccC---
Confidence            4568999999999999999999999999999999999999999999999999999999999  99999999876542   


Q ss_pred             CCccccccceeEEEEEcCcEEEEceEEeeccccCCCCCCCceEEEEEecCccEEEeeeeeCCcceeecCCCceEEeecEE
Q 043630          137 NGIELGTYKSASVSVFADFFCATGITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHI  216 (359)
Q Consensus       137 ~g~~~~t~~satv~v~a~~f~~~nLTi~Nt~~~~~g~~~~QAvAL~v~gd~~~~~nc~~~g~QDTL~~~~gr~yf~~c~I  216 (359)
                         ..+|+.++||.+.+++|+++||||+|++    |..++|||||++++||++|++|+|+|+|||||++.|||||++|+|
T Consensus        80 ---~~~t~~sat~~v~~~~f~a~nitf~Nt~----g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~I  152 (319)
T d1gq8a_          80 ---GSTTFNSATVAAVGAGFLARDITFQNTA----GAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFI  152 (319)
T ss_dssp             ---TCCTGGGCSEEECSTTCEEEEEEEEECC----CGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEE
T ss_pred             ---CCccccccceeeecCCeEEEeeEEEeCC----CCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEE
Confidence               2468899999999999999999999997    456679999999999999999999999999999999999999999


Q ss_pred             eccceEEecCceeEEEeeEEEeeCCC---ceEEEeecCCCCCCCceEEEEeeEEeeec---------eEEeceeecccce
Q 043630          217 QGSIDFIFGRARSLYQDCVLQSIAEK---SGAIAAHHRDIPDDSSGFSFVNCVINGTG---------KIYLGRAWGNYSR  284 (359)
Q Consensus       217 eG~vDfIfG~g~a~fe~c~i~~~~~~---~g~I~A~~r~~~~~~~G~vf~~c~it~~~---------~~yLGRpW~~~s~  284 (359)
                      ||+||||||+++++||+|+|+++...   .++|+||+|+++.+++||||++|+|++++         ++||||||++++|
T Consensus       153 eG~vDFIfG~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~  232 (319)
T d1gq8a_         153 AGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSR  232 (319)
T ss_dssp             EESSSCEEESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCE
T ss_pred             EeeccEEecCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcce
Confidence            99999999999999999999997643   46899999999999999999999999864         5799999999999


Q ss_pred             EEEEccccCccccCCCCCCCCCCCCCcccEEEEeccccCCCCCCCCCccc---cCCCHHHHcCccccceecCCCCCC
Q 043630          285 IIYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSWL---KSLSYEEVQPFLNVTFIDGKEWLR  358 (359)
Q Consensus       285 vv~~~~~~~~~i~p~GW~~w~~~~~~~t~~f~EY~~~GpGa~~~~rv~w~---~~Lt~~ea~~~~~~~fi~g~~W~~  358 (359)
                      |||++|+|+++|.|+||.+|+.....++++|+||+|+|||+++++||+|+   ++|+++||++|+.++||+|++|||
T Consensus       233 vvf~~t~l~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~  309 (319)
T d1gq8a_         233 TVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLK  309 (319)
T ss_dssp             EEEESCEECTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSG
T ss_pred             EEEEecccccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccc
Confidence            99999999999999999999998889999999999999999999999997   589999999999999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure