Citrus Sinensis ID: 043633

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSAIRKLHA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
EYKEWILRTIEETWTLFHQKFTALWHqhkdgsgeaylpeiynkpelQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAhvedfesikddskrATCERQALELAKLLLKERRNFQAITEVVSAIRKLHA
Flexible Loop (DISEMBL)
EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHVEdfesikddskratCERQALELAKLLLKERRNFQAITEVVSAIRKLHA
Low Complexity Region (SEG)
EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQalelaklllkerrNFQAITEVVSAIRKLHA
Disordered region (IsUnstruct)
***EWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHVEDFESIKD***RATCERQALELAKLLLKERRNFQAITEVVSAI*****
Disordered Region (DISOPRED)
EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSAIRKL**
Disordered Region (DISEMBL)
EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSAIRKLHA
Disordered Region (DISPRO)
EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSAIRKLHA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSAIRKLHA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q9C6D2	420	Methylthioribose kinase O	yes	no	0.976	0.297	0.696	7e-49
Q7XR60	427	Methylthioribose kinase 2	yes	no	0.929	0.278	0.672	3e-46
Q7XR61	430	Methylthioribose kinase 1	yes	no	0.929	0.276	0.672	6e-46
A8GAB2	399	Methylthioribose kinase O	yes	no	0.875	0.280	0.308	5e-12
B5XZW3	399	Methylthioribose kinase O	yes	no	0.875	0.280	0.300	8e-11
C1EQQ8	393	Methylthioribose kinase O	yes	no	0.710	0.231	0.380	2e-10
Q9F0P1	399	Methylthioribose kinase O	yes	no	0.875	0.280	0.292	2e-10
A6T655	399	Methylthioribose kinase O	yes	no	0.875	0.280	0.292	2e-10
A1JP08	399	Methylthioribose kinase O	yes	no	0.875	0.280	0.317	3e-10
Q731R6	393	Methylthioribose kinase O	yes	no	0.710	0.231	0.380	5e-10

>sp|Q9C6D2|MTK_ARATH Methylthioribose kinase OS=Arabidopsis thaliana GN=MTK PE=1 SV=1

 Score =  192 bits (487), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 87/125 (69%), Positives = 108/125 (86%)

Query: 1   EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFH 60
           EYK+WILRTIE+TW LF+++F ALW Q+KDG GEAYL +IYN  E+ + VQE +M++L H
Sbjct: 294 EYKQWILRTIEQTWNLFNKRFIALWDQNKDGPGEAYLADIYNNTEVLKFVQENYMRNLLH 353

Query: 61  DTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVV 120
           D+LGFGAAKMIRRIVGVAHVEDFESI++D +RA CER ALE AK+LLKERR F++I EVV
Sbjct: 354 DSLGFGAAKMIRRIVGVAHVEDFESIEEDKRRAICERSALEFAKMLLKERRKFKSIGEVV 413

Query: 121 SAIRK 125
           SAI++
Sbjct: 414 SAIQQ 418

Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate in the methionine cycle. Contributes to the maintenance of AdoMet homeostasis and is required to sustain high rates of ethylene synthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 0EC: 0

>sp|Q7XR60|MTK2_ORYSJ Methylthioribose kinase 2 OS=Oryza sativa subsp. japonica GN=MTK2 PE=2 SV=1

 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 101/119 (84%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
           YK+WIL+TIE++W  FH+KF  LW++HKDG+GEAYLP IYN  EL  LVQ+K+M  LFHD
Sbjct: 300 YKKWILKTIEDSWNFFHKKFVELWNKHKDGNGEAYLPPIYNSSELLSLVQKKYMTSLFHD 359

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVV 120
           +LGFG+AKMIRRIVG+AHVEDFESI+D SKRA+CER+AL  AK +LK RR F++I +V+
Sbjct: 360 SLGFGSAKMIRRIVGIAHVEDFESIEDASKRASCERRALNCAKAILKGRRQFESIEQVI 418

Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|Q7XR61|MTK1_ORYSJ Methylthioribose kinase 1 OS=Oryza sativa subsp. japonica GN=MTK1 PE=2 SV=1

 Score =  182 bits (461), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 101/119 (84%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
           YK+WIL+TIE++W LFH+KF  LW++HKDG+GEAYLP IYN  EL  L Q+K+M  LFHD
Sbjct: 303 YKKWILKTIEDSWNLFHKKFVELWNKHKDGNGEAYLPPIYNSSELLCLAQKKYMTSLFHD 362

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVV 120
           +LGFG+AKMIRRIVG+AHVEDFESI+D SKRA+CER+AL  AK +LK RR F++I +V+
Sbjct: 363 SLGFGSAKMIRRIVGIAHVEDFESIEDASKRASCERRALNCAKAILKGRRQFESIGQVI 421

Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|A8GAB2|MTNK_SERP5 Methylthioribose kinase OS=Serratia proteamaculans (strain 568) GN=mtnK PE=3 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 11/123 (8%)

Query: 3   KEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDT 62
           +E  L+ + E W +F  +F AL HQ    +  A +P             E+F++ ++ D 
Sbjct: 286 REQRLQDVRELWLIFADRFLALCHQQTREAALA-VPG----------YAEQFLQQVWTDA 334

Query: 63  LGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSA 122
           +G+  +++IRR +G+AHV D +SI D   RA C+R AL L + L+      + I  +++ 
Sbjct: 335 VGYCGSELIRRTIGLAHVADLDSISDAEMRAECQRNALGLGRALIVNAPQIEHIDALLAR 394

Query: 123 IRK 125
           IR+
Sbjct: 395 IRQ 397

Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.

Serratia proteamaculans (strain 568) (taxid: 399741)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|B5XZW3|MTNK_KLEP3 Methylthioribose kinase OS=Klebsiella pneumoniae (strain 342) GN=mtnK PE=3 SV=1

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 11/123 (8%)

Query: 3   KEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDT 62
           +E  L  I + WT F ++F AL  +    +  AY       P         F+K ++ D 
Sbjct: 286 REQRLNDIHQLWTTFAERFQALAAEKTRDAALAY-------PGYA----SAFLKKVWADA 334

Query: 63  LGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSA 122
           +GF  +++IRR VG++HV D ++I+DD+ R  C R A+ L K L+       ++ E+++ 
Sbjct: 335 VGFCGSELIRRSVGLSHVADIDTIQDDAMRHECLRHAITLGKALIVLAERIDSVDELLAR 394

Query: 123 IRK 125
           +R+
Sbjct: 395 VRQ 397

Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.

Klebsiella pneumoniae (strain 342) (taxid: 507522)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|C1EQQ8|MTNK_BACC3 Methylthioribose kinase OS=Bacillus cereus (strain 03BB102) GN=mtnK PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 14/105 (13%)

Query: 10  IEETWTLFHQKFTALWHQHKDGSG-EAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAA 68
           IE+TW+ F + FT LW     G G EAY  E    P +        ++++F DT+GF   
Sbjct: 281 IEKTWSYFVETFTKLWI----GEGVEAYTKEKQWLPII--------LQNIFTDTVGFAGC 328

Query: 69  KMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLK-ERRN 112
           ++IRR +G+AHV D + I +   R   ++QAL L K L+K E +N
Sbjct: 329 ELIRRTIGLAHVADLDEITNKETRIQAKKQALSLGKELIKYESKN 373

Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.

Bacillus cereus (strain 03BB102) (taxid: 572264)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|Q9F0P1|MTNK_KLEPN Methylthioribose kinase OS=Klebsiella pneumoniae GN=mtnK PE=1 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 11/123 (8%)

Query: 3   KEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDT 62
           +E  L  I + WT F ++F AL  +    +  AY       P         F+K ++ D 
Sbjct: 286 REQRLNDIHQLWTTFAERFQALAAEKTRDAALAY-------PGYA----SAFLKKVWADA 334

Query: 63  LGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSA 122
           +GF  +++IRR VG++HV D ++I+DD+ R  C R A+ L + L+       ++ E+++ 
Sbjct: 335 VGFCGSELIRRSVGLSHVADIDTIQDDAMRHECLRHAITLGRALIVLAERIDSVDELLAR 394

Query: 123 IRK 125
           +R+
Sbjct: 395 VRQ 397

Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.

Klebsiella pneumoniae (taxid: 573)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|A6T655|MTNK_KLEP7 Methylthioribose kinase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mtnK PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 11/123 (8%)

Query: 3   KEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDT 62
           +E  L  I + WT F ++F AL  +    +  AY       P         F+K ++ D 
Sbjct: 286 REQRLNDIHQLWTTFAERFQALAAEKTRDAALAY-------PGYA----SAFLKKVWADA 334

Query: 63  LGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSA 122
           +GF  +++IRR VG++HV D ++I+DD+ R  C R A+ L + L+       ++ E+++ 
Sbjct: 335 VGFCGSELIRRSVGLSHVADIDTIQDDAMRHECLRHAITLGRALIVLAERIDSVDELLAR 394

Query: 123 IRK 125
           +R+
Sbjct: 395 VRQ 397

Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.

Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|A1JP08|MTNK_YERE8 Methylthioribose kinase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=mtnK PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 11/123 (8%)

Query: 3   KEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDT 62
           +E  L+ I   W  F  +F AL  +    S  A     Y +  LQQ+ Q         D 
Sbjct: 286 REQRLKDIHILWETFSHRFLALCEEKTQDSTLATAG--YARLFLQQVWQ---------DA 334

Query: 63  LGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSA 122
           +G+  +++IRR +G+AHV D +SI DD  R  C+R AL L + L+       +I ++++ 
Sbjct: 335 VGYCGSELIRRTIGLAHVADLDSIADDEMRRACQRHALSLGRTLILAASRIDSIDDLIAR 394

Query: 123 IRK 125
           IR+
Sbjct: 395 IRQ 397

Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.

Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) (taxid: 393305)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|Q731R6|MTNK_BACC1 Methylthioribose kinase OS=Bacillus cereus (strain ATCC 10987) GN=mtnK PE=3 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 14/105 (13%)

Query: 10  IEETWTLFHQKFTALWHQHKDGSG-EAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAA 68
           IE+TW+ F   FT LW     G G EAY  E    P +        ++++F D +GF   
Sbjct: 281 IEKTWSYFVDTFTKLWI----GEGVEAYTKEKQWLPII--------LQNIFTDVVGFAGC 328

Query: 69  KMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLK-ERRN 112
           ++IRR +G+AHV D + I +  KR   ++QAL L K L+K E +N
Sbjct: 329 ELIRRTIGLAHVADLDEIANKEKRIQAKKQALYLGKELIKYESKN 373

Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.

Bacillus cereus (strain ATCC 10987) (taxid: 222523)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
118488207	418	unknown [Populus trichocarpa]	0.976	0.299	0.816	1e-54
224103675	418	predicted protein [Populus trichocarpa]	0.976	0.299	0.808	5e-54
225429291	419	PREDICTED: methylthioribose kinase [Viti	0.968	0.295	0.790	4e-53
224056200	418	predicted protein [Populus trichocarpa]	0.984	0.301	0.777	2e-52
356575680	417	PREDICTED: methylthioribose kinase 1-lik	0.968	0.297	0.741	4e-52
255635020	417	unknown [Glycine max]	0.968	0.297	0.741	6e-52
255555259	424	Methylthioribose kinase, putative [Ricin	0.992	0.299	0.755	2e-51
356536154	417	PREDICTED: methylthioribose kinase-like	0.968	0.297	0.733	2e-51
255636278	417	unknown [Glycine max]	0.968	0.297	0.733	3e-51
449445914	418	PREDICTED: methylthioribose kinase-like	0.976	0.299	0.744	4e-51

>gi|118488207|gb|ABK95923.1| unknown [Populus trichocarpa]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/125 (81%), Positives = 114/125 (91%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
           YKEWILRTI+ETW+LF++KFTALW +HKDGSGEAYLP IYN PEL QLVQ KFM+DLFHD
Sbjct: 293 YKEWILRTIKETWSLFYKKFTALWDEHKDGSGEAYLPGIYNNPELHQLVQRKFMQDLFHD 352

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVS 121
           TLGFGAAKMIRRIVGVAHVEDFESI D SKRA CER AL+LAK+L+KERR FQ+I EVVS
Sbjct: 353 TLGFGAAKMIRRIVGVAHVEDFESIPDASKRAQCERPALDLAKMLIKERRKFQSIDEVVS 412

Query: 122 AIRKL 126
           AI++L
Sbjct: 413 AIQQL 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103675|ref|XP_002313150.1| predicted protein [Populus trichocarpa] gi|222849558|gb|EEE87105.1| predicted protein [Populus trichocarpa]

 Score =  215 bits (547), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/125 (80%), Positives = 113/125 (90%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
           YKEWILRTI+ETW+LF++KFTALW +HKDGSGEAYLP IYN PEL QLVQ KFM+DLFHD
Sbjct: 293 YKEWILRTIKETWSLFYKKFTALWDEHKDGSGEAYLPGIYNNPELHQLVQRKFMQDLFHD 352

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVS 121
           TLGFGAAKMIRRIVGVAHVEDFESI D SKRA CER AL+LAK+L+KERR  Q+I EVVS
Sbjct: 353 TLGFGAAKMIRRIVGVAHVEDFESIPDASKRAQCERPALDLAKMLIKERRKLQSIDEVVS 412

Query: 122 AIRKL 126
           AI++L
Sbjct: 413 AIQQL 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429291|ref|XP_002269233.1| PREDICTED: methylthioribose kinase [Vitis vinifera] gi|147818770|emb|CAN73919.1| hypothetical protein VITISV_028621 [Vitis vinifera] gi|296083115|emb|CBI22519.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 98/124 (79%), Positives = 112/124 (90%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
           YK+WIL+TIE+TW  FH+KFTALW++H++GSGEAYLPEIYN PELQ L Q+K+M+DL HD
Sbjct: 293 YKKWILKTIEQTWNFFHKKFTALWNEHRNGSGEAYLPEIYNNPELQLLTQKKYMQDLLHD 352

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVS 121
           TLGFGAAKMIRRIVGVAHVEDFESI D SKRA CERQAL  AK+LLKERR FQAITEVVS
Sbjct: 353 TLGFGAAKMIRRIVGVAHVEDFESIVDASKRANCERQALVFAKMLLKERRKFQAITEVVS 412

Query: 122 AIRK 125
           AI++
Sbjct: 413 AIQQ 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056200|ref|XP_002298752.1| predicted protein [Populus trichocarpa] gi|222846010|gb|EEE83557.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/126 (77%), Positives = 113/126 (89%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
           YKEWILRTI ETW+LF++KFTALW +HKDGSGEAYLPEIYN PEL+ LVQ KFM+DL HD
Sbjct: 293 YKEWILRTIRETWSLFYKKFTALWDEHKDGSGEAYLPEIYNNPELRLLVQRKFMQDLLHD 352

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVS 121
           TLGFGAAKMIRRIVGVAHVEDFESI D SKRA CE+QAL+LAK++LKER+ FQ+I EVV 
Sbjct: 353 TLGFGAAKMIRRIVGVAHVEDFESITDASKRAKCEQQALDLAKMVLKERKKFQSIDEVVL 412

Query: 122 AIRKLH 127
           AI+++ 
Sbjct: 413 AIQQVQ 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575680|ref|XP_003555966.1| PREDICTED: methylthioribose kinase 1-like [Glycine max]

 Score =  208 bits (530), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 113/124 (91%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
           YKEWIL+TIE++W LF++KFT+LW +HKDG+GEAYLP IYN PE+Q LVQ+K+M DLFHD
Sbjct: 293 YKEWILKTIEDSWNLFYKKFTSLWDEHKDGAGEAYLPAIYNNPEVQLLVQKKYMTDLFHD 352

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVS 121
           +LGFGAAKMIRRIVGVAHVEDFESI D +KRA+CER+AL+LAK+LLKERR F+ I E++S
Sbjct: 353 SLGFGAAKMIRRIVGVAHVEDFESIADAAKRASCERRALDLAKMLLKERRKFEGIAEIIS 412

Query: 122 AIRK 125
           AIR+
Sbjct: 413 AIRQ 416

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635020|gb|ACU17868.1| unknown [Glycine max]

 Score =  208 bits (529), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 113/124 (91%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
           YKEWIL+TIE++W LF++KFT+LW +HKDG+GEAYLP IYN PE+Q LVQ+K+M DLFHD
Sbjct: 293 YKEWILKTIEDSWNLFYKKFTSLWDEHKDGAGEAYLPAIYNNPEVQLLVQKKYMTDLFHD 352

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVS 121
           +LGFGAAKMIRRIVGVAHVEDFESI D +KRA+CER+AL+LAK+LLKERR F+ I E++S
Sbjct: 353 SLGFGAAKMIRRIVGVAHVEDFESIADAAKRASCERRALDLAKVLLKERRKFEGIAEIIS 412

Query: 122 AIRK 125
           AIR+
Sbjct: 413 AIRQ 416

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555259|ref|XP_002518666.1| Methylthioribose kinase, putative [Ricinus communis] gi|223542047|gb|EEF43591.1| Methylthioribose kinase, putative [Ricinus communis]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 110/127 (86%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
           YKEWIL+ IE TW LF +KF ALW +HKDG GEAYLPEIYNKPE++QLVQ KFM+DLFHD
Sbjct: 293 YKEWILKIIENTWNLFDKKFIALWDEHKDGPGEAYLPEIYNKPEVRQLVQRKFMRDLFHD 352

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVS 121
           TLGFGAAKMIRRIVGVAHVEDFESIKD SKRA CER+AL+ AK+LLK RR+F +I  VVS
Sbjct: 353 TLGFGAAKMIRRIVGVAHVEDFESIKDASKRAECERKALDFAKMLLKNRRDFDSIDGVVS 412

Query: 122 AIRKLHA 128
           A++ L +
Sbjct: 413 AMQPLDS 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536154|ref|XP_003536604.1| PREDICTED: methylthioribose kinase-like [Glycine max]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 91/124 (73%), Positives = 113/124 (91%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
           YKEWIL+TIE++W LF+QKFT+LW +HK+G+GEAYLP IYN PE+Q LVQ+K+M DLFHD
Sbjct: 293 YKEWILKTIEDSWNLFYQKFTSLWDEHKNGAGEAYLPTIYNNPEVQLLVQKKYMTDLFHD 352

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVS 121
           +LGFGAAK+IRRIVGVAHVEDFESI D +KRA+CER+AL+LAK+LLKERR F+ I E++S
Sbjct: 353 SLGFGAAKIIRRIVGVAHVEDFESITDAAKRASCERRALDLAKMLLKERRKFEGIAEIIS 412

Query: 122 AIRK 125
           AIR+
Sbjct: 413 AIRQ 416

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636278|gb|ACU18479.1| unknown [Glycine max]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 91/124 (73%), Positives = 113/124 (91%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
           YKEWIL+TIE++W LF+QKFT+LW +HK+G+GEAYLP IYN PE+Q LVQ+K+M DLFHD
Sbjct: 293 YKEWILKTIEDSWNLFYQKFTSLWDEHKNGAGEAYLPTIYNNPEVQLLVQKKYMTDLFHD 352

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVS 121
           +LGFGAAK+IRRIVGVAHVEDFESI D +KRA+CER+AL+LAK+LLKERR F+ I E++S
Sbjct: 353 SLGFGAAKIIRRIVGVAHVEDFESITDAAKRASCERRALDLAKMLLKERRKFEGIAEIIS 412

Query: 122 AIRK 125
           AIR+
Sbjct: 413 AIRQ 416

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445914|ref|XP_004140717.1| PREDICTED: methylthioribose kinase-like [Cucumis sativus] gi|449486609|ref|XP_004157346.1| PREDICTED: methylthioribose kinase-like [Cucumis sativus]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 93/125 (74%), Positives = 109/125 (87%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
           YKEWILR IEETW LF +KF ALW  HKDG GEAYLP IYN PELQQLVQ K++ ++FHD
Sbjct: 293 YKEWILRMIEETWNLFRKKFVALWELHKDGPGEAYLPAIYNNPELQQLVQNKYLTEVFHD 352

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVS 121
           +LGFGAAKMIRRIVGVAHV DFE+IKD SKRA CER+ LELAKL+LK+RRNF +I++V+S
Sbjct: 353 SLGFGAAKMIRRIVGVAHVADFETIKDPSKRAECERRGLELAKLVLKKRRNFNSISQVIS 412

Query: 122 AIRKL 126
           AIR++
Sbjct: 413 AIREI 417

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2007253	420	MTK "S-methyl-5-thioribose kin	0.976	0.297	0.608	4.3e-38
UNIPROTKB|Q7XR61	430	MTK1 "Methylthioribose kinase	0.929	0.276	0.605	3e-37
UNIPROTKB|Q81MJ5	393	mtnK "Methylthioribose kinase"	0.601	0.195	0.366	2.2e-07
TIGR_CMR|BA_4252	393	BA_4252 "5-methylthioribose ki	0.601	0.195	0.366	2.2e-07
UNIPROTKB|Q81ZC3	409	mtnK "Methylthioribose kinase"	0.664	0.207	0.322	3.6e-06
TIGR_CMR|BA_0346	409	BA_0346 "5-methylthioribose ki	0.664	0.207	0.322	3.6e-06

TAIR|locus:2007253 MTK "S-methyl-5-thioribose kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 76/125 (60%), Positives = 96/125 (76%)

Query:     1 EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFH 60
             EYK+WILRTIE+TW LF+++F ALW Q+KDG GEAYL +IYN  E+ + VQE +M++L H
Sbjct:   294 EYKQWILRTIEQTWNLFNKRFIALWDQNKDGPGEAYLADIYNNTEVLKFVQENYMRNLLH 353

Query:    61 DTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQXXXXXXXXXXXXXNFQAITEVV 120
             D+LGFGAAKMIRRIVGVAHVEDFESI++D +RA CER               F++I EVV
Sbjct:   354 DSLGFGAAKMIRRIVGVAHVEDFESIEEDKRRAICERSALEFAKMLLKERRKFKSIGEVV 413

Query:   121 SAIRK 125
             SAI++
Sbjct:   414 SAIQQ 418

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046522 "S-methyl-5-thioribose kinase activity" evidence=IEA;ISS;IDA;IMP

GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q7XR61 MTK1 "Methylthioribose kinase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 72/119 (60%), Positives = 92/119 (77%)

Query:     2 YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
             YK+WIL+TIE++W LFH+KF  LW++HKDG+GEAYLP IYN  EL  L Q+K+M  LFHD
Sbjct:   303 YKKWILKTIEDSWNLFHKKFVELWNKHKDGNGEAYLPPIYNSSELLCLAQKKYMTSLFHD 362

Query:    62 TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQXXXXXXXXXXXXXNFQAITEVV 120
             +LGFG+AKMIRRIVG+AHVEDFESI+D SKRA+CER+              F++I +V+
Sbjct:   363 SLGFGSAKMIRRIVGIAHVEDFESIEDASKRASCERRALNCAKAILKGRRQFESIGQVI 421

GO:0046522 "S-methyl-5-thioribose kinase activity" evidence=IDA

UNIPROTKB|Q81MJ5 mtnK "Methylthioribose kinase" [Bacillus anthracis (taxid:1392)]

 Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 33/90 (36%), Positives = 49/90 (54%)

Query:    10 IEETWTLFHQKFTALWHQHKDGSG-EAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAA 68
             IE+TW+ F + FT LW     G G EAY  E   K  L  ++Q     ++F D +GF   
Sbjct:   281 IEKTWSYFVETFTKLWI----GEGVEAYTKE---KQWLPIILQ-----NIFTDAVGFAGC 328

Query:    69 KMIRRIVGVAHVEDFESIKDDSKRATCERQ 98
             ++IRR +G+AHV D + I +   R   ++Q
Sbjct:   329 ELIRRTIGLAHVADLDEITNKETRIQAKKQ 358

GO:0009086 "methionine biosynthetic process" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

TIGR_CMR|BA_4252 BA_4252 "5-methylthioribose kinase, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 33/90 (36%), Positives = 49/90 (54%)

Query:    10 IEETWTLFHQKFTALWHQHKDGSG-EAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAA 68
             IE+TW+ F + FT LW     G G EAY  E   K  L  ++Q     ++F D +GF   
Sbjct:   281 IEKTWSYFVETFTKLWI----GEGVEAYTKE---KQWLPIILQ-----NIFTDAVGFAGC 328

Query:    69 KMIRRIVGVAHVEDFESIKDDSKRATCERQ 98
             ++IRR +G+AHV D + I +   R   ++Q
Sbjct:   329 ELIRRTIGLAHVADLDEITNKETRIQAKKQ 358

GO:0009086 "methionine biosynthetic process" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

UNIPROTKB|Q81ZC3 mtnK "Methylthioribose kinase" [Bacillus anthracis (taxid:1392)]

 Score = 115 (45.5 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 31/96 (32%), Positives = 48/96 (50%)

Query:     2 YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
             Y +W+  T+ E   LF +KF   W+ H        + EI  K E      E +++ +  D
Sbjct:   290 YMDWLQSTMVEVIDLFKKKFLDAWNIH--------VTEIMAKEEG---FNEIYLQSVLED 338

Query:    62 TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCER 97
             T      ++IRRIVG+A V+D   I+++  RA  ER
Sbjct:   339 TAAVTGLELIRRIVGLAKVKDITCIENEEARARAER 374

GO:0009086 "methionine biosynthetic process" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=ISS

TIGR_CMR|BA_0346 BA_0346 "5-methylthioribose kinase, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 115 (45.5 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 31/96 (32%), Positives = 48/96 (50%)

Query:     2 YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
             Y +W+  T+ E   LF +KF   W+ H        + EI  K E      E +++ +  D
Sbjct:   290 YMDWLQSTMVEVIDLFKKKFLDAWNIH--------VTEIMAKEEG---FNEIYLQSVLED 338

Query:    62 TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCER 97
             T      ++IRRIVG+A V+D   I+++  RA  ER
Sbjct:   339 TAAVTGLELIRRIVGLAKVKDITCIENEEARARAER 374


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       115   0.00091  102 3  11 22  0.45    30
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  142 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.27u 0.09s 12.36t   Elapsed:  00:00:00
  Total cpu time:  12.28u 0.09s 12.37t   Elapsed:  00:00:00
  Start:  Fri May 10 10:42:32 2013   End:  Fri May 10 10:42:32 2013

GO:0009086 "methionine biosynthetic process" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.100	LOW CONFIDENCE prediction!
3rd Layer	2.7.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_IX2396	SubName- Full=Putative uncharacterized protein; (418 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_VI0635	hypothetical protein (384 aa)	•	•	•			•	•		0.964
	eugene3.121520001	Predicted protein (251 aa)						•	•		0.607

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
PLN02756	418	PLN02756, PLN02756, S-methyl-5-thioribose kinase	3e-80
PRK09550	401	PRK09550, mtnK, methylthioribose kinase; Reviewed	2e-36
COG4857	408	COG4857, COG4857, Predicted kinase [General functi	2e-20
TIGR01767	370	TIGR01767, MTRK, 5-methylthioribose kinase	2e-20
PRK12396	409	PRK12396, PRK12396, 5-methylribose kinase; Reviewe	1e-17

>gnl|CDD|166397 PLN02756, PLN02756, S-methyl-5-thioribose kinase

 Score =  241 bits (617), Expect = 3e-80
 Identities = 102/126 (80%), Positives = 115/126 (91%)

Query: 1   EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFH 60
            YKEWIL+TIE+TW LFH+KFTALW +HKDGSGEAYLPEIYN PEL QLVQ+K+M+DL H
Sbjct: 292 TYKEWILKTIEQTWNLFHKKFTALWDEHKDGSGEAYLPEIYNNPELLQLVQKKYMQDLLH 351

Query: 61  DTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVV 120
           DTLGFGAAKMIRRIVGVAHVEDFESI+D SKRA CERQAL+ AK+LLKERR FQ+I EVV
Sbjct: 352 DTLGFGAAKMIRRIVGVAHVEDFESIEDASKRANCERQALDFAKMLLKERRKFQSIGEVV 411

Query: 121 SAIRKL 126
           SAI++L
Sbjct: 412 SAIQQL 417

Length = 418

>gnl|CDD|236561 PRK09550, mtnK, methylthioribose kinase; Reviewed

 Score =  127 bits (322), Expect = 2e-36
 Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 11/126 (8%)

Query: 1   EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFH 60
            ++EW+L TIEETW+ F +KF  LW   K+    A   E Y          E +++++  
Sbjct: 283 AFREWLLETIEETWSTFAEKFLKLWR--KESVDAALAEEGY---------LEAYLQNILR 331

Query: 61  DTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVV 120
           D +GF   ++IRR +G+AHV D ++I+D   RA  ER AL+L + L+  R    +I +++
Sbjct: 332 DAVGFAGCELIRRTIGLAHVADLDTIEDPELRAEAERHALKLGRELILNRDKIASIEDLI 391

Query: 121 SAIRKL 126
           +  R++
Sbjct: 392 ALFRQI 397

Length = 401

>gnl|CDD|227194 COG4857, COG4857, Predicted kinase [General function prediction only]

 Score = 84.5 bits (209), Expect = 2e-20
 Identities = 38/126 (30%), Positives = 71/126 (56%), Gaps = 10/126 (7%)

Query: 1   EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFH 60
           E + ++L  I + W  F ++F+ LW   K+   + +        E  +   +  +++++ 
Sbjct: 290 EMRAYLLECILDIWETFREEFSLLWR--KERQDKLF--------ENAEQALDYVIENIWK 339

Query: 61  DTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVV 120
           D+LGF   +MIRR +G+AHV D E+I D  KRA CE++AL+  + ++ +R    +IT+V+
Sbjct: 340 DSLGFAGIEMIRRTLGLAHVADLETIADSDKRAQCEKKALKKGRHMIVKRSEIHSITDVI 399

Query: 121 SAIRKL 126
              + L
Sbjct: 400 ELAKLL 405

Length = 408

>gnl|CDD|130828 TIGR01767, MTRK, 5-methylthioribose kinase

 Score = 84.2 bits (208), Expect = 2e-20
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 10/124 (8%)

Query: 3   KEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDT 62
           +E +L  + + W  F + F+ LW +            +Y   +         +  ++ D 
Sbjct: 255 REPLLEHVNQVWETFEETFSELWQKDSLDM-------VYANIDGYL---TDTLSHIWEDA 304

Query: 63  LGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSA 122
           +GF   ++IRR +G+AHV D ++I D +KR  C+R ALE  +  + +R   ++I EV+  
Sbjct: 305 IGFAGCELIRRTIGLAHVADLDTIVDFAKRIGCKRLALETGRAFIVKRSEIKSIDEVIEL 364

Query: 123 IRKL 126
              L
Sbjct: 365 FALL 368

This enzyme is involved in the methionine salvage pathway in certain bacteria. Length = 370

>gnl|CDD|183499 PRK12396, PRK12396, 5-methylribose kinase; Reviewed

 Score = 76.8 bits (189), Expect = 1e-17
 Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 11/125 (8%)

Query: 1   EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFH 60
            Y +W+  T+ E   LF +KF   W  H        + EI  K E      E +++ +  
Sbjct: 289 TYMDWLQSTMVEVIDLFKKKFLDAWDIH--------VTEIMAKEEG---FNEIYLQSVLE 337

Query: 61  DTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVV 120
           DT      ++IRRIVG+A V+D   I+++  RA  ER  L++AK  +     ++  T  V
Sbjct: 338 DTAAVTGLELIRRIVGLAKVKDITCIENEEARARAERICLQVAKKFILRANQYKTGTSFV 397

Query: 121 SAIRK 125
             +++
Sbjct: 398 ETLKE 402

Length = 409

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
PLN02756	418	S-methyl-5-thioribose kinase	100.0
PRK12396	409	5-methylribose kinase; Reviewed	100.0
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	100.0
PRK09550	401	mtnK methylthioribose kinase; Reviewed	100.0
COG4857	408	Predicted kinase [General function prediction only	100.0

>PLN02756 S-methyl-5-thioribose kinase

Probab=100.00  E-value=2.8e-39  Score=269.16  Aligned_cols=126  Identities=81%  Similarity=1.300  Sum_probs=116.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhhhCChhhHHHHHHHHHHHHHHHHHhhhHHHHhhhhcCCccc
Q 043633            1 EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHV   80 (128)
Q Consensus         1 ~~~~~ll~~I~~~w~~F~~~F~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~il~D~~GfAG~e~iRRiiG~A~V   80 (128)
                      +|++||+++|+++|+.|+++|.++|+++.++....|.+++++++++.++|+++||++||+|++|||||||||||||+|||
T Consensus       292 ~~~~~ll~~i~~~w~~F~~~F~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~d~~Gfag~e~iRR~vG~A~v  371 (418)
T PLN02756        292 TYKEWILKTIEQTWNLFHKKFTALWDEHKDGSGEAYLPEIYNNPELLQLVQKKYMQDLLHDTLGFGAAKMIRRIVGVAHV  371 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchhcccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhhHhcccccc
Confidence            47999999999999999999999999998643333445678888888999999999999999999999999999999999


Q ss_pred             cCCcCCCChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHh
Q 043633           81 EDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSAIRKL  126 (128)
Q Consensus        81 ~D~~~I~d~~~R~~aer~aL~ig~~li~~r~~~~~i~~~~~~~~~~  126 (128)
                      +||++|+|.++|+.|||.+|.+||.||+||++++|++++++++++.
T Consensus       372 ~D~~~I~d~~~R~~~er~al~~g~~li~~~~~~~~~~~~~~~~~~~  417 (418)
T PLN02756        372 EDFESIEDASKRANCERQALDFAKMLLKERRKFQSIGEVVSAIQQL  417 (418)
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999998864

>PRK12396 5-methylribose kinase; Reviewed

Probab=100.00  E-value=9.4e-38  Score=259.18  Aligned_cols=115  Identities=28%  Similarity=0.534  Sum_probs=106.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhhhCChhhHHHHHHHHHHHHHHHHHhhhHHHHhhhhcCCccc
Q 043633            1 EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHV   80 (128)
Q Consensus         1 ~~~~~ll~~I~~~w~~F~~~F~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~il~D~~GfAG~e~iRRiiG~A~V   80 (128)
                      +|++||+++|+++|+.|.++|.++|++++++       ++.+.    ++|+++||++||+|++|||||||||||||+|||
T Consensus       289 ~~~~wll~~i~~~w~~F~~~F~~lw~~~~~~-------~~~~~----~~~~~~~l~~i~~D~~Gfag~e~iRR~vG~Ahv  357 (409)
T PRK12396        289 TYMDWLQSTMVEVIDLFKKKFLDAWDIHVTE-------IMAKE----EGFNEIYLQSVLEDTAAVTGLELIRRIVGLAKV  357 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-------ccccc----HHHHHHHHHHHHHHHHHHhhHHHHHHhcccccc
Confidence            4799999999999999999999999999863       23333    348999999999999999999999999999999


Q ss_pred             cCCcCCCChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHh
Q 043633           81 EDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSAIRKL  126 (128)
Q Consensus        81 ~D~~~I~d~~~R~~aer~aL~ig~~li~~r~~~~~i~~~~~~~~~~  126 (128)
                      +||++|+|.++|+.|||.+|.+||.||++|++++|++++++++++.
T Consensus       358 ~D~~~I~D~~~R~~~er~aL~~g~~li~~~~~~~~~~~~~~~~~~~  403 (409)
T PRK12396        358 KDITCIENEEARARAERICLQVAKKFILRANQYKTGTSFVETLKEQ  403 (409)
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998864

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=100.00  E-value=2e-37  Score=254.69  Aligned_cols=117  Identities=28%  Similarity=0.564  Sum_probs=106.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhhhCChhhHHHHHHHHHHHHHHHHHhhhHHHHhhhhcCCccc
Q 043633            1 EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHV   80 (128)
Q Consensus         1 ~~~~~ll~~I~~~w~~F~~~F~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~il~D~~GfAG~e~iRRiiG~A~V   80 (128)
                      +|++||+++|+++|+.|.++|+++|+++++  ++.    +.+.    ++|+++||++||+|++|||||||||||||+|||
T Consensus       253 ~~~~~ll~~i~~~w~~F~~~F~~lw~~~~~--~~~----~~~~----~~~~~~~l~~i~~d~~Gfag~e~iRR~vG~Ahv  322 (370)
T TIGR01767       253 AMREPLLEHVNQVWETFEETFSELWQKDSL--DMV----YANI----DGYLTDTLSHIWEDAIGFAGCELIRRTIGLAHV  322 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccc----cccc----HHHHHHHHHHHHHHHHHHhHHHHHHHhcccccC
Confidence            479999999999999999999999999985  222    2233    348999999999999999999999999999999


Q ss_pred             cCCcCCCChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHhc
Q 043633           81 EDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSAIRKLH  127 (128)
Q Consensus        81 ~D~~~I~d~~~R~~aer~aL~ig~~li~~r~~~~~i~~~~~~~~~~~  127 (128)
                      +||++|+|.++|+.|||.+|.+|+.||++|++++|+++++++++.+.
T Consensus       323 ~D~~~I~d~~~R~~~er~~l~~g~~li~~~~~~~~~~~~~~~~~~~~  369 (370)
T TIGR01767       323 ADLDTIVDFAKRIGCKRLALETGRAFIVKRSEIKSIDEVIELFALLV  369 (370)
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999988753

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=100.00  E-value=4.6e-37  Score=255.20  Aligned_cols=115  Identities=34%  Similarity=0.749  Sum_probs=107.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhhhCChhhHHHHHHHHHHHHHHHHHhhhHHHHhhhhcCCcccc
Q 043633            2 YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHVE   81 (128)
Q Consensus         2 ~~~~ll~~I~~~w~~F~~~F~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~il~D~~GfAG~e~iRRiiG~A~V~   81 (128)
                      |++|++++|+++|+.|.++|+++|++++++  +     +++.++    |+++||++||+|++|||||||||||||+|||+
T Consensus       284 ~~~~~~~~i~~~w~~f~~~f~~~w~~~~~~--~-----~~~~~~----~~~~~l~~i~~d~~gfag~e~~RR~vG~a~v~  352 (401)
T PRK09550        284 FREWLLETIEETWSTFAEKFLKLWRKESVD--A-----ALAEEG----YLEAYLQNILRDAVGFAGCELIRRTIGLAHVA  352 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccc--h-----hhhhHH----HHHHHHHHHHHHHHHhhhHHHhhhhccccccc
Confidence            789999999999999999999999999963  3     344444    89999999999999999999999999999999


Q ss_pred             CCcCCCChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHhc
Q 043633           82 DFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSAIRKLH  127 (128)
Q Consensus        82 D~~~I~d~~~R~~aer~aL~ig~~li~~r~~~~~i~~~~~~~~~~~  127 (128)
                      ||++|+|+++|+.|||.+|.+|+.||++|++++|++++++.+++..
T Consensus       353 d~~~i~d~~~r~~~er~~l~~g~~li~~~~~~~~~~~~~~~~~~~~  398 (401)
T PRK09550        353 DLDTIEDPELRAEAERHALKLGRELILNRDKIASIEDLIALFRQIK  398 (401)
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998753

>COG4857 Predicted kinase [General function prediction only]

Probab=100.00  E-value=1.1e-33  Score=226.92  Aligned_cols=116  Identities=31%  Similarity=0.725  Sum_probs=107.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhhhCChhhHHHHHHHHHHHHHHHHHhhhHHHHhhhhcCCccc
Q 043633            1 EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHV   80 (128)
Q Consensus         1 ~~~~~ll~~I~~~w~~F~~~F~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~il~D~~GfAG~e~iRRiiG~A~V   80 (128)
                      ++++||+++|.++|.+|.++|+.+|+++..  +     .++.+   .++|+++|+.+||+|++|||||||||||+|+|||
T Consensus       290 ~~r~~L~e~i~~iw~~F~e~fs~lW~k~~~--~-----~l~~n---~e~~ld~~i~~I~~d~lgfAG~E~iRRtlGlAhv  359 (408)
T COG4857         290 EMRAYLLECILDIWETFREEFSLLWRKERQ--D-----KLFEN---AEQALDYVIENIWKDSLGFAGIEMIRRTLGLAHV  359 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--H-----HHHHh---HHHHHHHHHHHHHHHHhhcchHHHHHHHhhhhhh
Confidence            478999999999999999999999999963  2     35555   2559999999999999999999999999999999


Q ss_pred             cCCcCCCChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHh
Q 043633           81 EDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSAIRKL  126 (128)
Q Consensus        81 ~D~~~I~d~~~R~~aer~aL~ig~~li~~r~~~~~i~~~~~~~~~~  126 (128)
                      +||++|.|+++|+.||+.+|..|+.+|++|.+++||.|++++++-+
T Consensus       360 adl~ti~~~dkr~~~e~~al~~g~~~i~kr~~~~si~dv~~l~~ll  405 (408)
T COG4857         360 ADLETIADSDKRAQCEKKALKKGRHMIVKRSEIHSITDVIELAKLL  405 (408)
T ss_pred             ccccccCCHHHHhhhHHHHHHHhHHHHhhhhhcccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	128
2pyw_A	420	Structure Of A. Thaliana 5-Methylthioribose Kinase		3e-42
2olc_A	397	Crystal Structure Of 5-Methylthioribose Kinase In C		5e-05

>pdb|2PYW|A Chain A, Structure Of A. Thaliana 5-Methylthioribose Kinase In Complex With Adp And Mtr Length = 420

Iteration: 1
 Score =  166 bits (420), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 96/125 (76%)
Query: 1   EYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFH 60
           EYK+WILRTIE+TW LF+++F ALW Q+KDG GEAYL +IYN  E+ + VQE +M++L H
Sbjct: 294 EYKQWILRTIEQTWNLFNKRFIALWDQNKDGPGEAYLADIYNNTEVLKFVQENYMRNLLH 353
Query: 61  DTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQXXXXXXXXXXXXXNFQAITEVV 120
           D+LGFGAAKMIRRIVGVAHVEDFESI++D +RA CER               F++I EVV
Sbjct: 354 DSLGFGAAKMIRRIVGVAHVEDFESIEEDKRRAICERSALEFAKMLLKERRKFKSIGEVV 413
Query: 121 SAIRK 125
           SAI++
Sbjct: 414 SAIQQ 418

>pdb|2OLC|A Chain A, Crystal Structure Of 5-Methylthioribose Kinase In Complex With Adp-2ho Length = 397

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 17/127 (13%)
Query: 3   KEWILRTIEETWTLFHQKFTALWHQHK---DGSGEAYLPEIYNKPELQQLVQEKFMKDLF 59
           +E +   + + W  F + F+  W +       + + YL +               +  +F
Sbjct: 282 REPLYEHVNQVWETFEETFSEAWQKDSLDVYANIDGYLTDT--------------LSHIF 327
Query: 60  HDTLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQXXXXXXXXXXXXXNFQAITEV 119
            + +GF   ++IRR +G+AHV D ++I    KR   +R               F+ IT+V
Sbjct: 328 EEAIGFAGCELIRRTIGLAHVADLDTIVPFDKRIGRKRLALETGTAFIEKRSEFKTITDV 387
Query: 120 VSAIRKL 126
           +   + L
Sbjct: 388 IELFKLL 394

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	1e-35
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	1e-26

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana} Length = 420

 Score =  125 bits (315), Expect = 1e-35
 Identities = 86/124 (69%), Positives = 107/124 (86%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
           YK+WILRTIE+TW LF+++F ALW Q+KDG GEAYL +IYN  E+ + VQE +M++L HD
Sbjct: 295 YKQWILRTIEQTWNLFNKRFIALWDQNKDGPGEAYLADIYNNTEVLKFVQENYMRNLLHD 354

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVS 121
           +LGFGAAKMIRRIVGVAHVEDFESI++D +RA CER ALE AK+LLKERR F++I EVVS
Sbjct: 355 SLGFGAAKMIRRIVGVAHVEDFESIEEDKRRAICERSALEFAKMLLKERRKFKSIGEVVS 414

Query: 122 AIRK 125
           AI++
Sbjct: 415 AIQQ 418

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A* Length = 397

 Score =  100 bits (250), Expect = 1e-26
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 11/125 (8%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
            +E +   + + W  F + F+  W +           ++Y   +         +  +F +
Sbjct: 281 DREPLYEHVNQVWETFEETFSEAWQKDS--------LDVYANIDG---YLTDTLSHIFEE 329

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVS 121
            +GF   ++IRR +G+AHV D ++I    KR   +R ALE     +++R  F+ IT+V+ 
Sbjct: 330 AIGFAGCELIRRTIGLAHVADLDTIVPFDKRIGRKRLALETGTAFIEKRSEFKTITDVIE 389

Query: 122 AIRKL 126
             + L
Sbjct: 390 LFKLL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	99.93
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	99.91

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=99.93  E-value=1.6e-25  Score=182.14  Aligned_cols=124  Identities=69%  Similarity=1.201  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhhhCChhhHHHHHHHHHHHHHHHHHhhhHHHHhhhhcCCcccc
Q 043633            2 YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHVE   81 (128)
Q Consensus         2 ~~~~ll~~I~~~w~~F~~~F~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~il~D~~GfAG~e~iRRiiG~A~V~   81 (128)
                      |++|++..+..+|+.|.++|.++|++...+.+..|...+|.++...++++++|++++|+|++||+||+||||++|+|||+
T Consensus       295 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~  374 (420)
T 2pyw_A          295 YKQWILRTIEQTWNLFNKRFIALWDQNKDGPGEAYLADIYNNTEVLKFVQENYMRNLLHDSLGFGAAKMIRRIVGVAHVE  374 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCCTTCTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            57899999999999999999999999875311134333332122245689999999999999999999999999999999


Q ss_pred             CCcCCCChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHH
Q 043633           82 DFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSAIRK  125 (128)
Q Consensus        82 D~~~I~d~~~R~~aer~aL~ig~~li~~r~~~~~i~~~~~~~~~  125 (128)
                      ||++|+|.+.|..+++.+|++|+.||++|+++++++++++++++
T Consensus       375 ~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  418 (420)
T 2pyw_A          375 DFESIEEDKRRAICERSALEFAKMLLKERRKFKSIGEVVSAIQQ  418 (420)
T ss_dssp             HHHTCCSHHHHHHHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHhcchhcCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999884

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=99.91  E-value=7.3e-24  Score=170.35  Aligned_cols=115  Identities=27%  Similarity=0.561  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhhhCChhhHHHHHHHHHHHHHHHHHhhhHHHHhhhhcCCcccc
Q 043633            2 YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHVE   81 (128)
Q Consensus         2 ~~~~ll~~I~~~w~~F~~~F~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~il~D~~GfAG~e~iRRiiG~A~V~   81 (128)
                      +++|+++++.++|+.|.++|.++|++...   +.|    ...++    ++++|+.++|.|++||+|++||||++|++||+
T Consensus       281 ~~~~~~~~~~~l~~~y~~~f~~~~~~~~~---~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~r~~g~~~~~  349 (397)
T 2olc_A          281 DREPLYEHVNQVWETFEETFSEAWQKDSL---DVY----ANIDG----YLTDTLSHIFEEAIGFAGCELIRRTIGLAHVA  349 (397)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHHHCC---CTT----TTSTT----HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cch----hccHH----HHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            67899999999999999999999999874   222    12333    89999999999999999999999999999999


Q ss_pred             CCcCCCChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHhc
Q 043633           82 DFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSAIRKLH  127 (128)
Q Consensus        82 D~~~I~d~~~R~~aer~aL~ig~~li~~r~~~~~i~~~~~~~~~~~  127 (128)
                      |+++|+|++.|..+++.+|.+|+.||++|++++++++++++++.+.
T Consensus       350 d~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  395 (397)
T 2olc_A          350 DLDTIVPFDKRIGRKRLALETGTAFIEKRSEFKTITDVIELFKLLV  395 (397)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHT
T ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHhChhhcCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d2pula1	392	d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {	2e-32

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]} Length = 392

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

 Score =  115 bits (288), Expect = 2e-32
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 11/125 (8%)

Query: 2   YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHD 61
            +E +   + + W  F + F+  W +                           +  +F +
Sbjct: 277 DREPLYEHVNQVWETFEETFSEAWQKDSLDVYANI-----------DGYLTDTLSHIFEE 325

Query: 62  TLGFGAAKMIRRIVGVAHVEDFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVS 121
            +GF   ++IRR +G+AHV D ++I    KR   +R ALE     +++R  F+ IT+V+ 
Sbjct: 326 AIGFAGCELIRRTIGLAHVADLDTIVPFDKRIGRKRLALETGTAFIEKRSEFKTITDVIE 385

Query: 122 AIRKL 126
             + L
Sbjct: 386 LFKLL 390

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	100.0

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=6e-34  Score=230.05  Aligned_cols=114  Identities=26%  Similarity=0.534  Sum_probs=106.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhhhCChhhHHHHHHHHHHHHHHHHHhhhHHHHhhhhcCCcccc
Q 043633            2 YKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLFHDTLGFGAAKMIRRIVGVAHVE   81 (128)
Q Consensus         2 ~~~~ll~~I~~~w~~F~~~F~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~il~D~~GfAG~e~iRRiiG~A~V~   81 (128)
                      +++|++++|.++|+.|.++|.++|.++.++       .++..++    |++.||++||+|++|||||||||||+|+|||+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~~~~~~----~~~~~l~~~~~d~~~~~g~~~~rr~~g~a~~~  345 (392)
T d2pula1         277 DREPLYEHVNQVWETFEETFSEAWQKDSLD-------VYANIDG----YLTDTLSHIFEEAIGFAGCELIRRTIGLAHVA  345 (392)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------TTTTSTT----HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcccc-------cccccHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            578999999999999999999999999863       2344555    89999999999999999999999999999999


Q ss_pred             CCcCCCChhHHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHh
Q 043633           82 DFESIKDDSKRATCERQALELAKLLLKERRNFQAITEVVSAIRKL  126 (128)
Q Consensus        82 D~~~I~d~~~R~~aer~aL~ig~~li~~r~~~~~i~~~~~~~~~~  126 (128)
                      ||++|+|.+.|+.||+.+|.+|+.||+||++++++++++++++++
T Consensus       346 d~~~i~~~~~r~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~  390 (392)
T d2pula1         346 DLDTIVPFDKRIGRKRLALETGTAFIEKRSEFKTITDVIELFKLL  390 (392)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999875