Citrus Sinensis ID: 043649

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MALQDSEVPSSILNATAGNRPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHc
malqdsevpssilnatagnrptasyhptlwgekfldyssvddsvamdatIDQDEFEALKQKIKNmlisptdksfqkLSLIDAVQRLGVAYHFEREIEDEleklspdeydgndvhSVALRFRLLRQQgyriscdifggfkddrgKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEILHALNrpirrglprlEAVYYIDlysrddskDKAILLKFAKLDFCMLQVIHRKELSIITE
malqdsevpssilnatagnrptasyhptlWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELeklspdeydgnDVHSVALRFRLLRQQGYRISCDIfggfkddrgKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEILHALnrpirrglprLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVIHRkelsiite
MALQDSEVPSSILNATAGNRPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE
***********************SYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELE*****EYDGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSI***
************************YHPTLWGEKFLDYSSVD*********DQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE
*********SSILNATAGNRPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE
*********************T*SYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiii
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MALQDSEVPSSILNATAGNRPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELSIITE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query258 2.2.26 [Sep-21-2011]
Q94JS8 560 (E)-beta-farnesene syntha N/A no 0.903 0.416 0.567 3e-71
Q6Q3H3 557 (-)-germacrene D synthase no no 0.961 0.445 0.518 1e-68
O49853 554 (+)-delta-cadinene syntha N/A no 0.961 0.447 0.482 2e-65
Q6Q3H2 556 Valencene synthase OS=Vit no no 0.899 0.417 0.514 2e-65
Q39761 554 (+)-delta-cadinene syntha N/A no 0.961 0.447 0.479 9e-65
Q39760 554 (+)-delta-cadinene syntha N/A no 0.961 0.447 0.471 1e-64
Q43714 555 (+)-delta-cadinene syntha N/A no 0.972 0.452 0.486 2e-63
E3W207 559 Sesquiterpene synthase OS N/A no 0.961 0.443 0.461 9e-63
P93665 554 (+)-delta-cadinene syntha N/A no 0.961 0.447 0.463 1e-62
B5A435 559 Sesquiterpene synthase OS N/A no 0.961 0.443 0.461 3e-62
>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1 Back     alignment and function desciption
 Score =  268 bits (684), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 138/243 (56%), Positives = 180/243 (74%), Gaps = 10/243 (4%)

Query: 20  RPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSL 79
           RP A +HPTLWG  FL   S  D   +DA   Q++  ALKQ+++ M+ +  +K  QKL +
Sbjct: 21  RPIADFHPTLWGNHFL--KSAADVETIDAAT-QEQHAALKQEVRRMITTTANKLAQKLHM 77

Query: 80  IDAVQRLGVAYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFK 139
           IDAVQRLGVAYHFE+EIEDEL K+S D  D +D++ V+LRFRL RQQG +ISCD+F  FK
Sbjct: 78  IDAVQRLGVAYHFEKEIEDELGKVSHD-LDSDDLYVVSLRFRLFRQQGVKISCDVFDKFK 136

Query: 140 DDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMV-----TQVSPQ 194
           DD GKFK SLIND+ GML+LYEAA+L IRGEDILDEA+ FTT+HL+S++     +  +  
Sbjct: 137 DDEGKFKESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVISISDHSHANSN 196

Query: 195 LSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVIHRKELS 254
           L+++I H+L  P+R+   RLEA Y++D+YSRDD  D+  LLKFAKLDF +LQ  H+KE S
Sbjct: 197 LAEQIRHSLQIPLRKAAARLEARYFLDIYSRDDLHDET-LLKFAKLDFNILQAAHQKEAS 255

Query: 255 IIT 257
           I+T
Sbjct: 256 IMT 258
Sesquiterpene cyclase catalyzing the production of beta-farnesene from farnesyl diphosphate.
Citrus junos (taxid: 135197)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4EC: 7
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function description
>sp|O49853|DCS4_GOSAR (+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|Q39761|DCS1_GOSAR (+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1 Back     alignment and function description
>sp|Q39760|DCS2_GOSAR (+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1 Back     alignment and function description
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|P93665|DCS1_GOSHI (+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
255563621 558 (+)-delta-cadinene synthase isozyme A, p 0.984 0.455 0.545 2e-71
300079902 560 (E)-beta-farnesene synthase [Citrus reti 0.903 0.416 0.572 7e-70
75250254 560 RecName: Full=(E)-beta-farnesene synthas 0.903 0.416 0.567 2e-69
9864189 555 terpene synthase [Citrus junos] 0.961 0.446 0.534 8e-69
261343328 548 terpene synthase 1 [Citrus sinensis] 0.918 0.432 0.553 6e-68
433288601 553 germacrene-D synthase [Malus x domestica 0.953 0.444 0.515 1e-67
33316389 548 valencene synthase [Citrus sinensis] 0.918 0.432 0.549 4e-67
225461172 557 PREDICTED: (-)-germacrene D synthase [Vi 0.961 0.445 0.522 6e-67
359493937 557 PREDICTED: (-)-germacrene D synthase [Vi 0.961 0.445 0.518 6e-67
302143187 725 unnamed protein product [Vitis vinifera] 0.961 0.342 0.522 6e-67
>gi|255563621|ref|XP_002522812.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|223537896|gb|EEF39510.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|350284786|gb|AEQ27766.1| alpha-copaene synthase [Ricinus communis] Back     alignment and taxonomy information
 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/262 (54%), Positives = 196/262 (74%), Gaps = 8/262 (3%)

Query: 1   MALQDSEVP--SSILNATAG-NRPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEA 57
           M+LQ S VP  +S  NAT+   R +++YHPT+WG+ FL  +++  S  +D +I+Q +FE 
Sbjct: 1   MSLQVSAVPIKTSTQNATSAVKRHSSTYHPTIWGDHFL--ANLSHSKIIDGSIEQ-QFEG 57

Query: 58  LKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEYDG-NDVHSV 116
           LKQK++ M+I   ++  +KL LIDAVQRLGV YHF+ EIED L+K+  D  D  +D+++V
Sbjct: 58  LKQKVRKMIIDLNNEPCKKLGLIDAVQRLGVGYHFKSEIEDVLQKVYHDYSDDEDDLNTV 117

Query: 117 ALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEA 176
           ALRFRLLRQ G ++SC IF  FKD  G FK SLIND  GML+LYEA HL IRGED+LDEA
Sbjct: 118 ALRFRLLRQHGIKVSCAIFEKFKDSEGNFKTSLINDALGMLSLYEATHLSIRGEDVLDEA 177

Query: 177 LAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLK 236
           LAFTT++L+S++ Q++  L+ +I  ALNRPIR+ LPRLEA  YID+Y+ ++S +   LL 
Sbjct: 178 LAFTTTNLQSVLPQLNTHLAAQISRALNRPIRKYLPRLEARNYIDIYATEESYN-TTLLN 236

Query: 237 FAKLDFCMLQVIHRKELSIITE 258
           FAKLDF MLQ +H+KEL+++T+
Sbjct: 237 FAKLDFNMLQELHQKELNVVTK 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|300079902|gb|ADJ67476.1| (E)-beta-farnesene synthase [Citrus reticulata] Back     alignment and taxonomy information
>gi|75250254|sp|Q94JS8.1|FARS_CITJU RecName: Full=(E)-beta-farnesene synthase; Short=CjFS; AltName: Full=Terpene synthase 10 gi|14134188|gb|AAK54279.1| (E)-beta-farnesene synthase [Citrus junos] Back     alignment and taxonomy information
>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos] Back     alignment and taxonomy information
>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis] Back     alignment and taxonomy information
>gi|433288601|gb|AGB14625.1| germacrene-D synthase [Malus x domestica] Back     alignment and taxonomy information
>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143187|emb|CBI20482.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
UNIPROTKB|B5A435 559 B5A435 "Sesquiterpene synthase 0.961 0.443 0.461 3.2e-58
UNIPROTKB|B2KSJ5 571 B2KSJ5 "(+)-gamma-cadinene syn 0.980 0.443 0.433 2.4e-53
UNIPROTKB|E2E2N7 555 TPS4 "Bicyclogermacrene syntha 0.906 0.421 0.454 1.2e-51
UNIPROTKB|J7LP58 564 J7LP58 "Alpha-copaene/delta-ca 0.992 0.453 0.444 5.8e-50
UNIPROTKB|J7LJN5 555 J7LJN5 "Beta-caryophyllene syn 0.953 0.443 0.438 5.2e-49
UNIPROTKB|J7LMP2 565 J7LMP2 "Bicyclogermacrene synt 0.980 0.447 0.423 5.2e-49
UNIPROTKB|B3TPQ6 550 B3TPQ6 "Beta-cubebene synthase 0.899 0.421 0.442 5.4e-47
UNIPROTKB|Q49SP5 554 Q49SP5 "Germacrene A synthase" 0.910 0.424 0.421 3.8e-46
UNIPROTKB|Q49SP4 545 Q49SP4 "Germacrene D synthase 0.895 0.423 0.405 2.4e-44
TAIR|locus:2178657 547 TPS21 "terpene synthase 21" [A 0.906 0.427 0.394 3.9e-44
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 120/260 (46%), Positives = 179/260 (68%)

Query:     3 LQDSEVP-SSILNATAGNRPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQK 61
             +++ +VP SS+ N    +RP A++ P++WG++F++Y+  D++   +    + + E LK++
Sbjct:     1 MENQKVPISSVPNLKELSRPIANFPPSIWGDRFINYACEDEN---EQAQKERQVEELKEQ 57

Query:    62 IKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEYDGN-------DVH 114
             ++  L +  DK  Q+L++IDA QRLG+AYHFE EIE+ LE +    Y  N       D++
Sbjct:    58 VRRELAATVDKPLQQLNIIDATQRLGIAYHFENEIEESLEHIYLHTYVENNCFQGSHDLY 117

Query:   115 SVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILD 174
             SVAL FRLLRQ GY++SCD+F  F+D    FK SL+ D  G+L LYEA HL + GE++LD
Sbjct:   118 SVALWFRLLRQDGYKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGEEMLD 177

Query:   175 EALAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAIL 234
             +AL F  + LES+V  ++  L++++ HAL RP+R+GLPRLEAVY+  +Y   DS +KA L
Sbjct:   178 DALEFAKTRLESIVNHLNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDSHNKA-L 236

Query:   235 LKFAKLDFCMLQVIHRKELS 254
             LK AKLDF +LQ +H+KELS
Sbjct:   237 LKLAKLDFNLLQSLHKKELS 256
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
TAIR|locus:2178657 TPS21 "terpene synthase 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 2e-99
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 3e-74
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 2e-21
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 8e-16
pfam03936 270 pfam03936, Terpene_synth_C, Terpene synthase famil 0.002
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  299 bits (769), Expect = 2e-99
 Identities = 114/248 (45%), Positives = 160/248 (64%), Gaps = 14/248 (5%)

Query: 20  RPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISP--TDKSFQKL 77
           RP+A++ P+LWG+      S D S   D   +  E E LK++++ ML         F++L
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSE-EDELEE--EIEELKEEVRKMLEDSEYPVDLFERL 57

Query: 78  SLIDAVQRLGVAYHFEREIEDELEK-----LSPDEYDGNDVHSVALRFRLLRQQGYRISC 132
            LID +QRLG++YHFE EI++ L+          E + +D+++ AL FRLLRQ GY +S 
Sbjct: 58  WLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSS 117

Query: 133 DIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQ-- 190
           D+F  FKD+ GKFK SL  DV GML+LYEA+HL   GEDILDEAL+FTT HLE  +    
Sbjct: 118 DVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNW 177

Query: 191 -VSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVIH 249
            + P LS EI +AL  P+   LPRLEA +YI+ Y ++D  ++  LL+ AKLDF +LQ +H
Sbjct: 178 IIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNE-TLLELAKLDFNILQALH 236

Query: 250 RKELSIIT 257
           ++EL I++
Sbjct: 237 QEELKILS 244

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 258
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PLN02592 800 ent-copalyl diphosphate synthase 100.0
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=9.9e-81  Score=613.55  Aligned_cols=234  Identities=48%  Similarity=0.822  Sum_probs=218.9

Q ss_pred             CCCCCCCCCCCcc-cccccCCccchhccchhhHHHHHHHHHHHHHHHhcCC--CccccccchhHHHHHHhCcccccHHHH
Q 043649           20 RPTASYHPTLWGE-KFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISP--TDKSFQKLSLIDAVQRLGVAYHFEREI   96 (258)
Q Consensus        20 R~~a~y~psiW~d-~fl~~~~~~~~~~~~~~~~~~~~~~Lk~eVr~~l~~~--~~d~~~~L~lID~lqRLGI~yhFe~EI   96 (258)
                      ||++||+||+||| .|+++++++..    ...+.+++++||++||+|+...  +.|++++|+|||+||||||+|||++||
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~----~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI   76 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSE----EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEI   76 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcch----hHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHH
Confidence            7899999999999 67777665542    2267899999999999999864  679999999999999999999999999


Q ss_pred             HHHHHHhcCCCC-----CCCChhhHHHHHHHhhhcCeeeccccccceecCCCccccccchhhHHHHHHHHhhhcCCCCch
Q 043649           97 EDELEKLSPDEY-----DGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGED  171 (258)
Q Consensus        97 ~~~L~~i~~~~~-----~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~Fk~~l~~Dv~glLsLYeAS~l~~~gE~  171 (258)
                      +++|+++|+.+.     ...|||+|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||+++||+
T Consensus        77 ~~~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~  156 (542)
T cd00684          77 KEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGED  156 (542)
T ss_pred             HHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcH
Confidence            999999998752     247999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhc---cCCChHHHHHHhcCCccccCchhhHHhhhhhhcccCCCCChHHHHHHHHhhhhHHHHH
Q 043649          172 ILDEALAFTTSHLESMVTQ---VSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFAKLDFCMLQVI  248 (258)
Q Consensus       172 iLdeA~~Fs~~~L~~~~~~---~~~~l~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~~n~~~LLelAklDFn~~Qs~  248 (258)
                      |||+|+.||++||++.+++   ++++|+++|.+||++||||++||+|||+||+.|++++++|++ ||||||+|||+||++
T Consensus       157 iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~-lLelAkldfn~~Q~~  235 (542)
T cd00684         157 ILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNET-LLELAKLDFNILQAL  235 (542)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHH-HHHHHHHHHHHHhHh
Confidence            9999999999999999986   788999999999999999999999999999999999999999 999999999999999


Q ss_pred             hHHHHHHHhC
Q 043649          249 HRKELSIITE  258 (258)
Q Consensus       249 hq~EL~~isr  258 (258)
                      ||+||++++|
T Consensus       236 hq~El~~~~r  245 (542)
T cd00684         236 HQEELKILSR  245 (542)
T ss_pred             HHHHHHHHhH
Confidence            9999999975

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 7e-66
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 5e-58
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 5e-58
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 5e-58
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 5e-58
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-57
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-57
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 3e-57
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 6e-57
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 6e-57
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 2e-37
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 3e-27
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 6e-26
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 6e-24
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 6e-24
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 1e-20
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 2e-20
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 3e-19
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  246 bits (629), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 126/263 (47%), Positives = 183/263 (69%), Gaps = 15/263 (5%)
Query: 1   MALQDSEVPSSILNATAGN--RPTASYHPTLWGEKFLDYSSVDDSVAMDATID---QDEF 55
           MA Q S++PSS   ++  +  RP A + P++WG+ FL+          D  ID   +   
Sbjct: 1   MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLN--------CPDKNIDAETEKRH 52
Query: 56  EALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEYDG-NDVH 114
           + LK++++ M+++P   S QKL+ ID+VQRLGV+YHF +EIEDELE +  +  D  ND++
Sbjct: 53  QQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLY 112
Query: 115 SVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILD 174
           + ++RFRLLR+ GY +SCD+F  FKD++G FK S+ +DV G+L LY+A++LR+ GEDILD
Sbjct: 113 TTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILD 172
Query: 175 EALAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAIL 234
           EA++FTT HL   V  +   LS+E+ HAL + IRRGLPR+EA +Y+ +Y   +S +KA L
Sbjct: 173 EAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKA-L 231
Query: 235 LKFAKLDFCMLQVIHRKELSIIT 257
           L+FAK+DF MLQ +HRKELS I 
Sbjct: 232 LEFAKIDFNMLQFLHRKELSEIC 254
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 2e-75
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 3e-74
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-70
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 1e-70
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 1e-67
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 7e-66
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 1e-49
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 5e-49
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 6e-48
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 5e-46
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  238 bits (607), Expect = 2e-75
 Identities = 121/261 (46%), Positives = 178/261 (68%), Gaps = 9/261 (3%)

Query: 1   MALQDSEVPSSILNATA--GNRPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEAL 58
           MA Q S++PSS   ++     RP A + P++WG+ FL+    +          +   + L
Sbjct: 1   MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCPDKNIDAET-----EKRHQQL 55

Query: 59  KQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKL-SPDEYDGNDVHSVA 117
           K++++ M+++P   S QKL+ ID+VQRLGV+YHF +EIEDELE +   +    ND+++ +
Sbjct: 56  KEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTS 115

Query: 118 LRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEAL 177
           +RFRLLR+ GY +SCD+F  FKD++G FK S+ +DV G+L LY+A++LR+ GEDILDEA+
Sbjct: 116 IRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAI 175

Query: 178 AFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKF 237
           +FTT HL   V  +   LS+E+ HAL + IRRGLPR+EA +Y+ +Y   +S +K  LL+F
Sbjct: 176 SFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNK-ALLEF 234

Query: 238 AKLDFCMLQVIHRKELSIITE 258
           AK+DF MLQ +HRKELS I  
Sbjct: 235 AKIDFNMLQFLHRKELSEICR 255
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 100.0
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.76
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-83  Score=634.29  Aligned_cols=251  Identities=48%  Similarity=0.834  Sum_probs=214.8

Q ss_pred             CCCCCCCCcccCC--CCCCCCCCCCCCCCCCcccccccCCccchhccchhhHHHHHHHHHHHHHHHhcCCCccccccchh
Q 043649            2 ALQDSEVPSSILN--ATAGNRPTASYHPTLWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSL   79 (258)
Q Consensus         2 ~~~~~~~~~~~~~--~~~~~R~~a~y~psiW~d~fl~~~~~~~~~~~~~~~~~~~~~~Lk~eVr~~l~~~~~d~~~~L~l   79 (258)
                      |-+.+..+++.+.  .....||+||||||+|||+||++ +. ...   .+.+.+++++||++||+||.+...|++++|+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~R~~~~~~ps~W~~~fl~~-~~-~~~---~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~l   76 (554)
T 3g4d_A            2 ASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNC-PD-KNI---DAETEKRHQQLKEEVRKMIVAPMANSTQKLAF   76 (554)
T ss_dssp             -----------------------CCCCCCTTTTTTTSC-CC-------CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHH
T ss_pred             CcccccccchhhhhccCCCCCCCCCCCccccccccccC-CC-chh---hHHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence            3344444444442  33558999999999999999997 42 222   56789999999999999997534689999999


Q ss_pred             HHHHHHhCcccccHHHHHHHHHHhcCCCC-CCCChhhHHHHHHHhhhcCeeeccccccceecCCCccccccchhhHHHHH
Q 043649           80 IDAVQRLGVAYHFEREIEDELEKLSPDEY-DGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLN  158 (258)
Q Consensus        80 ID~lqRLGI~yhFe~EI~~~L~~i~~~~~-~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~Fk~~l~~Dv~glLs  158 (258)
                      ||+||||||+|||++||+++|+++|+... ...|||+|||+|||||||||+||||||++|+|++|+|++++.+|++|||+
T Consensus        77 ID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~  156 (554)
T 3g4d_A           77 IDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLE  156 (554)
T ss_dssp             HHHHHHTTCGGGCHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHH
T ss_pred             HHHHHHcCchhhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHH
Confidence            99999999999999999999999997522 23699999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCCCchHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcCCccccCchhhHHhhhhhhcccCCCCChHHHHHHH
Q 043649          159 LYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAVYYIDLYSRDDSKDKAILLKFA  238 (258)
Q Consensus       159 LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~l~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~~n~~~LLelA  238 (258)
                      |||||||++|||+|||+|+.||++||++.+.+++++|+++|.|||++||||+|||+||||||+.|++++++|+. |||||
T Consensus       157 LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~-lLelA  235 (554)
T 3g4d_A          157 LYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKA-LLEFA  235 (554)
T ss_dssp             HHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHH-HHHHH
T ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHH-HHHHH
Confidence            99999999999999999999999999999887888999999999999999999999999999999999999999 99999


Q ss_pred             HhhhhHHHHHhHHHHHHHhC
Q 043649          239 KLDFCMLQVIHRKELSIITE  258 (258)
Q Consensus       239 klDFn~~Qs~hq~EL~~isr  258 (258)
                      |+|||+||++||+||++|+|
T Consensus       236 kldFn~~Q~~hq~El~~l~r  255 (554)
T 3g4d_A          236 KIDFNMLQFLHRKELSEICR  255 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999985
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 258
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 8e-72
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 9e-64
d5easa2 328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-05
d1n1ba2 328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 2e-05
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  216 bits (551), Expect = 8e-72
 Identities = 88/201 (43%), Positives = 139/201 (69%), Gaps = 5/201 (2%)

Query: 29  LWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGV 88
           LWG++FL +S  D+ VA        E EALK++ ++ML++   K    L+LID ++RLG+
Sbjct: 1   LWGDQFLSFSI-DNQVAEKYA---QEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGI 56

Query: 89  AYHFEREIEDELEKLSPDEYDGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVS 148
           +YHFE+EI++ L+++     + ND+ + AL+FRLLRQ G+ IS +IF  F+D+ GKFK S
Sbjct: 57  SYHFEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKES 116

Query: 149 LINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMVTQVSPQLSDEILHALNRPIR 208
           L +DV G+LNLYEA+H+R   +DIL++ALAF+T HLES    +   L +++ HAL + + 
Sbjct: 117 LASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLH 176

Query: 209 RGLPRLEAVYYID-LYSRDDS 228
           +G+PR+E  ++I  +Y ++ S
Sbjct: 177 KGVPRVETRFFISSIYDKEQS 197
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=2.8e-74  Score=501.08  Aligned_cols=196  Identities=44%  Similarity=0.821  Sum_probs=183.6

Q ss_pred             CCcccccccCCccchhccchhhHHHHHHHHHHHHHHHhcCCCccccccchhHHHHHHhCcccccHHHHHHHHHHhcCCCC
Q 043649           29 LWGEKFLDYSSVDDSVAMDATIDQDEFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGVAYHFEREIEDELEKLSPDEY  108 (258)
Q Consensus        29 iW~d~fl~~~~~~~~~~~~~~~~~~~~~~Lk~eVr~~l~~~~~d~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~  108 (258)
                      +|||+||++.++. ..   .+.+.+++++||++||+||.+...++.++|+|||+||||||+|||++||+++|+.||+.+.
T Consensus         1 iWgd~Fl~~~~~~-~~---~~~~~~~~e~Lk~eVr~ml~~~~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~   76 (197)
T d5easa1           1 LWGDQFLSFSIDN-QV---AEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNS   76 (197)
T ss_dssp             CCGGGGSCCCCCH-HH---HHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCC
T ss_pred             CCCCcccCCCCCc-hh---HHHHHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence            7999999976543 22   6789999999999999999875578999999999999999999999999999999998765


Q ss_pred             CCCChhhHHHHHHHhhhcCeeeccccccceecCCCccccccchhhHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHh
Q 043649          109 DGNDVHSVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDVTGMLNLYEAAHLRIRGEDILDEALAFTTSHLESMV  188 (258)
Q Consensus       109 ~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~Fk~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~  188 (258)
                      ..+|||+|||+|||||||||+||||||++|+|++|+|++++++||+|||+|||||||+++||+|||+|+.||++||++.+
T Consensus        77 ~~~dl~~~AL~FRLLRqhGy~Vs~dvF~~Fkd~~G~f~~~l~~D~~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~  156 (197)
T d5easa1          77 NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA  156 (197)
T ss_dssp             CCCSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHG
T ss_pred             CCCcHHHHHHHHHHHHHcCcccCHHHHhhhccCCCCcccchhHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            66799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCChHHHHHHhcCCccccCchhhHHhhhh-hhcccCCC
Q 043649          189 TQVSPQLSDEILHALNRPIRRGLPRLEAVYYI-DLYSRDDS  228 (258)
Q Consensus       189 ~~~~~~l~~~V~~aL~~P~h~~l~RleaR~yI-~~Y~~~~~  228 (258)
                      ++++++|+++|.|||++|+||||||||||||| ++|+++++
T Consensus       157 ~~~~~~l~~~V~~aL~~P~h~~l~rleaR~yI~~~Ye~e~s  197 (197)
T d5easa1         157 PHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQS  197 (197)
T ss_dssp             GGCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTT
T ss_pred             hhcCccHHHHHHHHhCCCccCCCcHHHHHHHHHHHhcccCC
Confidence            99999999999999999999999999999999 57988753
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure